Citrus Sinensis ID: 003296

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830---
Protein Sequence
MQSCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVSVDTTGNLKLINVTAPDTSPEKRRKSVVVPIVIALAAAILAVGVVSIFVLSISRRFYRVKDEHLQLGEDISSPQVIQGNLLTGNGIHRSNIDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR
Secondary Structure (PSIPRED)
cccccccccccEEEcccccccccccccccccccEEEccccccEEcccccccccccccEEEcccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccEEcccccccEEccccccccccccccccccccccEEcccHHHHHccccEEccccEEEEcccccccccccccEEEccccccccccccccccccccEEccccccEEccccccccccccccEEEccccEEEEcccccccccccccEEEcccccccccccHHHHccccccEEEccccEEEEccccccccccccccEEcccccccccccHHHHccccccccccccccccccccHHHHccccccccccccccccccccccHHHHHHHHcccccccccccHHHHHccccccccccccccccccccHHHcccccccEEEcccccccccccccccccccccccccccccccccccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHccccccEEEEccccEEEEEEcccccEEEEEEEEccccccccccHHHHHHHHHHHccccccccccEEEEEEcccccEEEEcccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccccEEccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHcccccccEEEccccccccccccccccccEEEEEccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHHHHHHEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccEEEcccccccccccHHHHHcccccEEEEEccccccccccHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHHHHHHEccccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEcccccccccccccHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEccccccccccHHHHHHHHcccccEEEcccccEEEEEEcccccEEEEEEcccccccccccccccHHHHHHHHHHcccHHHHHHHEEcccccccEEEEEccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccccEEEcccccHHHHHccHHEEEcccccccccEEEEcccccccccHEEEEEEcccccHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccHHHccHHHccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mqscggidglkllnfsknelvslptfngfaglevldfssnnlngninLQFDELVSlkslnlsknkfngflpinlgktKALEELVLSgnafhgeipkgiADYRNLTLIDlsannlsgsvpdriGELSKLEVLILSAnnldgrlptslASITTLSRFAAnqnkfsgsvpggITRFLRNLDLSYNkllgvipidllshpnlqtiDLSVNmlegslpqnmspnlvRLRLGTNlligeipsatftslEKLTYleldnnsftgmipqqlgscrslTLLNLAQnelngslpiqlgsLGILQVMNLQLnklsgeipsqfSQLKLLSTMNIswnslsgsipsFLSNLTNLVNLNLrqnnlngsipnsITNMRSLIELQlggnqlsgtipmmppRLQIALNLssnlfegpipttfarlnglevldlsnnrfsgeipqllAQMPTLTQLLLTnnqlsgvvpkfskwvsvdttgnlklinvtapdtspekrrksvVVPIVIALAAAILAVGVVSIFVLSISRRFYRVKDehlqlgedisspqviqgnlltgngihrsniDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLgklsnsnvmtPLAYVLASdsaylfyeyapkgtlFDVLHGCLENALDWASRYSIAVGVAQGLAFlhgftsnpillldLSTRNIFLkslkepqigdielckvidpskstgslstvagsvgyippeyayTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNsaqqdkldhildfnvsrTSLAVRSQMLTVLKVAVACVsvspearpKMKSVLRMLLNAR
Flexible Loop (DISEMBL)
mqscggidGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAanqnkfsgsvpgGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVSVDTTGNLKLinvtapdtspekrrkSVVVPIVIALAAAILAVGVVSIFVLSISRRFYRVKDEHLqlgedisspqVIQGNLLTGNGIHRSNIDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSlkepqigdielCKVIdpskstgslstvagsvgyIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVAcvsvspearpkmksVLRMLLNAR
Low Complexity Region (SEG)
MQSCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVslkslnlsknkfnGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFlsnltnlvnlnlrqnnlnGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIpqllaqmptltqllltnnqlSGVVPKFSKWVSVDTTGNLKLINVTAPDTSPEKRRKSvvvpivialaaailavgvvSIFVLSISRRFYRVKDEHLQLGEDISSPQVIQGNLLTGNGIHRSNIDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR
Disordered region (IsUnstruct)
*****GIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVSVDTTGNLKLINVTA*********KSVVVPIVIALAAAILAVGVVSIFVLSISRRFYRVKDEHLQLGEDISSPQVIQGNLLTGNGIHRSNIDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSV*******************
Disordered Region (DISOPRED)
MQSCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVSVDTTGNLKLI********************VIALAAAILAVGVVSIFVLSISRR*********************QGNLLTGNGIHRSNIDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWS*K********KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS****SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR
Disordered Region (DISEMBL)
MQSCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVSVDTTGNLKLINVTA*********KSVVVPIVIALAAAILAVGVVSIFVLSISRRFYRVKDEHLQLGEDISSPQVIQGNLLTGNGIHRSNIDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR
Disordered Region (DISPRO)
*QSCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVSVDTTGNLKLINVTAPDTSPEKRRKSVVVPIVIALAAAILAVGVVSIFVLSISRRFYRVKDEHLQL***********GNLLTGNGIHRSNIDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSD******SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPK*K*V***L****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQSCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVSVDTTGNLKLINVTAPDTSPEKRRKSVVVPIVIALAAAILAVGVVSIFVLSISRRFYRVKDEHLQLGEDISSPQVIQGNLLTGNGIHRSNIDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	833	2.2.26 [Sep-21-2011]
O22938	890	Leucine-rich repeat recep	no	no	0.945	0.885	0.387	1e-134
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.960	0.725	0.347	1e-113
O49318	1124	Probable leucine-rich rep	no	no	0.978	0.725	0.318	1e-110
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.969	0.797	0.339	1e-108
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.949	0.718	0.341	1e-107
C0LGV1	1135	LRR receptor-like serine/	no	no	0.959	0.703	0.342	1e-105
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.948	0.630	0.321	1e-105
Q9LHP4	1141	Receptor-like protein kin	no	no	0.906	0.661	0.333	1e-104
Q9SYQ8	980	Receptor protein kinase C	no	no	0.949	0.807	0.316	1e-99
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.942	0.658	0.340	1e-99

>sp|O22938|Y2182_ARATH Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 OS=Arabidopsis thaliana GN=At2g41820 PE=1 SV=1

 Score =  479 bits (1233), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 321/829 (38%), Positives = 456/829 (55%), Gaps = 41/829 (4%)

Query: 32  LEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFH 91
           +E+LD S   L GN+ L   +L SLK L+LS N FNG +P + G    LE L LS N F 
Sbjct: 65  VEMLDLSGLQLRGNVTL-ISDLRSLKHLDLSGNNFNGRIPTSFGNLSELEFLDLSLNRFV 123

Query: 92  GEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITT 151
           G IP      R L   ++S N L G +PD +  L +LE   +S N L+G +P  + ++++
Sbjct: 124 GAIPVEFGKLRGLRAFNISNNLLVGEIPDELKVLERLEEFQVSGNGLNGSIPHWVGNLSS 183

Query: 152 LSRFAANQNKFSGSVPGGI--TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLE 209
           L  F A +N   G +P G+     L  L+L  N+L G IP  +     L+ + L+ N L 
Sbjct: 184 LRVFTAYENDLVGEIPNGLGLVSELELLNLHSNQLEGKIPKGIFEKGKLKVLVLTQNRLT 243

Query: 210 GSLPQ--NMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCR 267
           G LP+   +   L  +R+G N L+G IP  T  ++  LTY E D N+ +G I  +   C 
Sbjct: 244 GELPEAVGICSGLSSIRIGNNELVGVIPR-TIGNISGLTYFEADKNNLSGEIVAEFSKCS 302

Query: 268 SLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSL 327
           +LTLLNLA N   G++P +LG L  LQ + L  N L GEIP  F     L+ +++S N L
Sbjct: 303 NLTLLNLAANGFAGTIPTELGQLINLQELILSGNSLFGEIPKSFLGSGNLNKLDLSNNRL 362

Query: 328 SGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPR-- 385
           +G+IP  L ++  L  L L QN++ G IP+ I N   L++LQLG N L+GTIP    R  
Sbjct: 363 NGTIPKELCSMPRLQYLLLDQNSIRGDIPHEIGNCVKLLQLQLGRNYLTGTIPPEIGRMR 422

Query: 386 -LQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQ 444
            LQIALNLS N   G +P    +L+ L  LD+SNN  +G IP LL  M +L ++  +NN 
Sbjct: 423 NLQIALNLSFNHLHGSLPPELGKLDKLVSLDVSNNLLTGSIPPLLKGMMSLIEVNFSNNL 482

Query: 445 LSGVVP---KFSKWVSVDTTGNLKLINV-------TAPDTSPEKRRKSVVVPIVIALAAA 494
           L+G VP    F K  +    GN +L           + D    +    V   IV+A+  +
Sbjct: 483 LNGPVPVFVPFQKSPNSSFLGNKELCGAPLSSSCGYSEDLDHLRYNHRVSYRIVLAVIGS 542

Query: 495 -----ILAVGVVSIFVLSISRRFYRVKDEHLQLGEDISSPQVIQGNLLTGNGIHRSNIDF 549
                +    VV +F++   +     K+  ++   +   P +I GN+   N   +  ID 
Sbjct: 543 GVAVFVSVTVVVLLFMMREKQEKAAAKNVDVEENVEDEQPAIIAGNVFLEN--LKQGIDL 600

Query: 550 TKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHH--KFDKELE 607
              ++A     N      FS+ YKAVMPSGM   +KKL   D+     SHH  K  +ELE
Sbjct: 601 DAVVKATMKESNKLSTGTFSSVYKAVMPSGMIVSVKKLKSMDRAI---SHHQNKMIRELE 657

Query: 608 VLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCL---ENALDWASRYSIAV 664
            L KL + +++ P+ +V+  D A L +++ P G L  ++H      E   DW  R SIAV
Sbjct: 658 RLSKLCHDHLVRPIGFVIYEDVALLLHQHLPNGNLTQLIHESTKKPEYQPDWPMRLSIAV 717

Query: 665 GVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAG 724
           G A+GLAFLH      I+ LD+S+ N+ L S  +  +G+IE+ K++DPS+ T S+S+VAG
Sbjct: 718 GAAEGLAFLHQVA---IIHLDVSSSNVLLDSGYKAVLGEIEISKLLDPSRGTASISSVAG 774

Query: 725 SVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVN----QGNELAKWVLRNSAQQD 780
           S GYIPPEYAYTM+VT  GNVYS+GV+LLE+LT +  V     +G +L KWV   SA+ +
Sbjct: 775 SFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTSRAPVEEEFGEGVDLVKWVHGASARGE 834

Query: 781 KLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
             + ILD  +S  S A R +ML  LKVA+ C  ++P  RPKMK V+ ML
Sbjct: 835 TPEQILDAKLSTVSFAWRREMLAALKVALLCTDITPAKRPKMKKVVEML 883

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 0EC: .EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  411 bits (1057), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 312/898 (34%), Positives = 452/898 (50%), Gaps = 98/898 (10%)

Query: 5    GGIDGLKLLNFSKNELV-SLPTFNG-FAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLS 62
            GG + L +L  ++N+L   LP   G    L  +    N  +G I  +     SL++L L 
Sbjct: 214  GGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALY 273

Query: 63   KNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRI 122
            KN+  G +P  LG  ++LE L L  N  +G IP+ I +      ID S N L+G +P  +
Sbjct: 274  KNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLEL 333

Query: 123  GELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNL----- 177
            G +  LE+L L  N L G +P  L+++  LS+   + N  +G +P G  ++LR L     
Sbjct: 334  GNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGF-QYLRGLFMLQL 392

Query: 178  ----------------------DLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQN 215
                                  D+S N L G IP  L  H N+  ++L  N L G++P  
Sbjct: 393  FQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTG 452

Query: 216  MS--PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLN 273
            ++    LV+LRL  N L+G  PS     +  +T +EL  N F G IP+++G+C +L  L 
Sbjct: 453  ITTCKTLVQLRLARNNLVGRFPSNLCKQV-NVTAIELGQNRFRGSIPREVGNCSALQRLQ 511

Query: 274  LAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPS 333
            LA N   G LP ++G L  L  +N+  NKL+GE+PS+    K+L  +++  N+ SG++PS
Sbjct: 512  LADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPS 571

Query: 334  FLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPR---LQIAL 390
             + +L  L  L L  NNL+G+IP ++ N+  L ELQ+GGN  +G+IP        LQIAL
Sbjct: 572  EVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQIAL 631

Query: 391  NLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVP 450
            NLS N   G IP   + L  LE L L+NN  SGEIP   A + +L     + N L+G +P
Sbjct: 632  NLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIP 691

Query: 451  KFSKWVSVDTTGNLKLINV---TAPDTSPEKRRKSVVVP------IVIALAAAILAVGVV 501
                       GN  L          T P    +S   P       +IA+ AA+  +G V
Sbjct: 692  LLRNISMSSFIGNEGLCGPPLNQCIQTQPFAPSQSTGKPGGMRSSKIIAITAAV--IGGV 749

Query: 502  SIFVLS----ISRRFYRVKDEHLQLGE------DISSPQVIQGNLLTGNGIHRSNIDFTK 551
            S+ +++    + RR  R      Q G+      DI  P              +    F  
Sbjct: 750  SLMLIALIVYLMRRPVRTVASSAQDGQPSEMSLDIYFPP-------------KEGFTFQD 796

Query: 552  AMEAVAN--PLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHK-------- 601
             + A  N     V  +    T YKAV+P+G +  +KK         L S+H+        
Sbjct: 797  LVAATDNFDESFVVGRGACGTVYKAVLPAGYTLAVKK---------LASNHEGGNNNNVD 847

Query: 602  --FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
              F  E+  LG + + N++    +     S  L YEY PKG+L ++LH    N LDW+ R
Sbjct: 848  NSFRAEILTLGNIRHRNIVKLHGFCNHQGSNLLLYEYMPKGSLGEILHDPSCN-LDWSKR 906

Query: 660  YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
            + IA+G AQGLA+LH      I   D+ + NI L    E  +GD  L KVID   S  S+
Sbjct: 907  FKIALGAAQGLAYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPHSK-SM 965

Query: 720  STVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAV---NQGNELAKWVLRNS 776
            S +AGS GYI PEYAYTM+VT   ++YS+GV+LLELLTGK  V   +QG ++  WV R+ 
Sbjct: 966  SAIAGSYGYIAPEYAYTMKVTEKSDIYSYGVVLLELLTGKAPVQPIDQGGDVVNWV-RSY 1024

Query: 777  AQQDKLDH-ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR 833
             ++D L   +LD  ++     + S MLTVLK+A+ C SVSP ARP M+ V+ ML+ + 
Sbjct: 1025 IRRDALSSGVLDARLTLEDERIVSHMLTVLKIALLCTSVSPVARPSMRQVVLMLIESE 1082

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  400 bits (1028), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 293/920 (31%), Positives = 454/920 (49%), Gaps = 105/920 (11%)

Query: 2    QSCGGIDGLKLLNFSKNELV-SLPTFNGFA-GLEVLDFSSNNLNGNINLQFDELVSLKSL 59
            +S G ++ L      +N+   ++PT  G    L++L  + N ++G +  +   LV L+ +
Sbjct: 199  RSLGNLNKLTTFRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEV 258

Query: 60   NLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVP 119
             L +NKF+GF+P ++G   +LE L L GN+  G IP  I + ++L  + L  N L+G++P
Sbjct: 259  ILWQNKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIP 318

Query: 120  DRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRF------ 173
              +G+LSK+  +  S N L G +P  L+ I+ L      QNK +G +P  +++       
Sbjct: 319  KELGKLSKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKL 378

Query: 174  --------------------LRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLP 213
                                +R L L +N L GVIP  L  +  L  +D S N L G +P
Sbjct: 379  DLSINSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIP 438

Query: 214  QNMS--PNLVRLRLGTNLLIGEIPSATF-----------------------TSLEKLTYL 248
              +    NL+ L LG+N + G IP                             L  L+ +
Sbjct: 439  PFICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAI 498

Query: 249  ELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIP 308
            ELD N F+G +P ++G+C+ L  L+LA N+ + +LP ++  L  L   N+  N L+G IP
Sbjct: 499  ELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIP 558

Query: 309  SQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIEL 368
            S+ +  K+L  +++S NS  GS+P  L +L  L  L L +N  +G+IP +I N+  L EL
Sbjct: 559  SEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSGNIPFTIGNLTHLTEL 618

Query: 369  QLGGNQLSGTIPM---MPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEI 425
            Q+GGN  SG+IP    +   LQIA+NLS N F G IP     L+ L  L L+NN  SGEI
Sbjct: 619  QMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEI 678

Query: 426  PQLLAQMPTLTQLLLTNNQLSGVVPK---FSKWVSVDTTGNLKLI--------------- 467
            P     + +L     + N L+G +P    F         GN  L                
Sbjct: 679  PTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGGHLRSCDPSHSSWP 738

Query: 468  NVTAPDTSPEKRRKSVVVPIVIALAAAILAVGVVSIFV---LSISRRFYRVKDEHLQLGE 524
            ++++      +R + +++   +    ++L + +V  F+   +  +  +   K+   Q  +
Sbjct: 739  HISSLKAGSARRGRIIIIVSSVIGGISLLLIAIVVHFLRNPVEPTAPYVHDKEPFFQESD 798

Query: 525  DISSPQ---VIQGNLLTGNGIHRSNIDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMS 581
                P+    ++  L    G H S I    A                 T YKAVMPSG +
Sbjct: 799  IYFVPKERFTVKDILEATKGFHDSYIVGRGAC---------------GTVYKAVMPSGKT 843

Query: 582  YFIKKLN---WSDKIFQLGSHHKFDKELEVLGKLSNSNV--MTPLAYVLASDSAYLFYEY 636
              +KKL      +      + + F  E+  LGK+ + N+  +    Y   S+S  L YEY
Sbjct: 844  IAVKKLESNREGNNNNSNNTDNSFRAEILTLGKIRHRNIVRLYSFCYHQGSNSNLLLYEY 903

Query: 637  APKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL 696
              +G+L ++LHG   +++DW +R++IA+G A+GLA+LH      I+  D+ + NI +   
Sbjct: 904  MSRGSLGELLHGGKSHSMDWPTRFAIALGAAEGLAYLHHDCKPRIIHRDIKSNNILIDEN 963

Query: 697  KEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELL 756
             E  +GD  L KVID   S  S+S VAGS GYI PEYAYTM+VT   ++YSFGV+LLELL
Sbjct: 964  FEAHVGDFGLAKVIDMPLSK-SVSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELL 1022

Query: 757  TGKTAVN---QGNELAKWVLRNSAQQDKLDHILDFNVSRTS-LAVRSQMLTVLKVAVACV 812
            TGK  V    QG +LA W   +         ILD  +++     + + M+TV K+AV C 
Sbjct: 1023 TGKAPVQPLEQGGDLATWTRNHIRDHSLTSEILDPYLTKVEDDVILNHMITVTKIAVLCT 1082

Query: 813  SVSPEARPKMKSVLRMLLNA 832
              SP  RP M+ V+ ML+ +
Sbjct: 1083 KSSPSDRPTMREVVLMLIES 1102

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score =  393 bits (1009), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 291/857 (33%), Positives = 433/857 (50%), Gaps = 49/857 (5%)

Query: 9   GLKLLNFSKNELVSLPT--FNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKF 66
           GL  LN S N L    T        LEVLD   N   G++   F  L  L+ L LS N  
Sbjct: 141 GLVHLNASGNNLSGNLTEDLGNLVSLEVLDLRGNFFQGSLPSSFKNLQKLRFLGLSGNNL 200

Query: 67  NGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELS 126
            G LP  LG+  +LE  +L  N F G IP    +  +L  +DL+   LSG +P  +G+L 
Sbjct: 201 TGELPSVLGQLPSLETAILGYNEFKGPIPPEFGNINSLKYLDLAIGKLSGEIPSELGKLK 260

Query: 127 KLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLS--YNKL 184
            LE L+L  NN  G +P  + SITTL     + N  +G +P  IT+      L+   NKL
Sbjct: 261 SLETLLLYENNFTGTIPREIGSITTLKVLDFSDNALTGEIPMEITKLKNLQLLNLMRNKL 320

Query: 185 LGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPN--LVRLRLGTNLLIGEIPSATFTSL 242
            G IP  + S   LQ ++L  N L G LP ++  N  L  L + +N   GEIPS T  + 
Sbjct: 321 SGSIPPAISSLAQLQVLELWNNTLSGELPSDLGKNSPLQWLDVSSNSFSGEIPS-TLCNK 379

Query: 243 EKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNK 302
             LT L L NN+FTG IP  L +C+SL  + +  N LNGS+PI  G L  LQ + L  N+
Sbjct: 380 GNLTKLILFNNTFTGQIPATLSTCQSLVRVRMQNNLLNGSIPIGFGKLEKLQRLELAGNR 439

Query: 303 LSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNM 362
           LSG IP   S    LS ++ S N +  S+PS + ++ NL    +  N ++G +P+   + 
Sbjct: 440 LSGGIPGDISDSVSLSFIDFSRNQIRSSLPSTILSIHNLQAFLVADNFISGEVPDQFQDC 499

Query: 363 RSLIELQLGGNQLSGTIPMMPPRLQ--IALNLSSNLFEGPIPTTFARLNGLEVLDLSNNR 420
            SL  L L  N L+GTIP      +  ++LNL +N   G IP     ++ L VLDLSNN 
Sbjct: 500 PSLSNLDLSSNTLTGTIPSSIASCEKLVSLNLRNNNLTGEIPRQITTMSALAVLDLSNNS 559

Query: 421 FSGEIPQLLAQMPTLTQLLLTNNQLSGVVP--KFSKWVSVDT-TGNLKLINVTAPDTSPE 477
            +G +P+ +   P L  L ++ N+L+G VP   F K ++ D   GN  L     P  S  
Sbjct: 560 LTGVLPESIGTSPALELLNVSYNKLTGPVPINGFLKTINPDDLRGNSGLCGGVLPPCSKF 619

Query: 478 KRR---------KSVVVPIVIALAAAILAVGVVSIFVLSISRRFYR---VKDEHLQLGED 525
           +R          K +V   +I + A++LA+G+++I   ++ +++Y      DE    GE 
Sbjct: 620 QRATSSHSSLHGKRIVAGWLIGI-ASVLALGILTIVTRTLYKKWYSNGFCGDETASKGE- 677

Query: 526 ISSPQVIQGNLLTGNGIHRSNIDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIK 585
              P  +          HR     +  +  +     + +      Y   +  S     +K
Sbjct: 678 --WPWRLM-------AFHRLGFTASDILACIKESNMIGMGATGIVYKAEMSRSSTVLAVK 728

Query: 586 KLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDV 645
           KL  S    + G+   F  E+ +LGKL + N++  L ++    +  + YE+   G L D 
Sbjct: 729 KLWRSAADIEDGTTGDFVGEVNLLGKLRHRNIVRLLGFLYNDKNMMIVYEFMLNGNLGDA 788

Query: 646 LHGCLENA-----LDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQ 700
           +HG  +NA     +DW SRY+IA+GVA GLA+LH     P++  D+ + NI L +  + +
Sbjct: 789 IHG--KNAAGRLLVDWVSRYNIALGVAHGLAYLHHDCHPPVIHRDIKSNNILLDANLDAR 846

Query: 701 IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKT 760
           I D  L +++   K T  +S VAGS GYI PEY YT++V    ++YS+GV+LLELLTG+ 
Sbjct: 847 IADFGLARMMARKKET--VSMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELLTGRR 904

Query: 761 AVN----QGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSP 816
            +     +  ++ +WV R       L+  LD NV      V+ +ML VL++A+ C +  P
Sbjct: 905 PLEPEFGESVDIVEWVRRKIRDNISLEEALDPNVGNCRY-VQEEMLLVLQIALLCTTKLP 963

Query: 817 EARPKMKSVLRMLLNAR 833
           + RP M+ V+ ML  A+
Sbjct: 964 KDRPSMRDVISMLGEAK 980

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  391 bits (1004), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 288/843 (34%), Positives = 410/843 (48%), Gaps = 52/843 (6%)

Query: 24   PTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEEL 83
            P+    + LEVL    N   G+I  +  +L  +K L L  N+  G +P  +G      E+
Sbjct: 253  PSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEI 312

Query: 84   VLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLP 143
              S N   G IPK      NL L+ L  N L G +P  +GEL+ LE L LS N L+G +P
Sbjct: 313  DFSENQLTGFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIP 372

Query: 144  TSLASITTLSRFAANQNKFSGSVPG--GITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTI 201
              L  +  L       N+  G +P   G       LD+S N L G IP        L  +
Sbjct: 373  QELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILL 432

Query: 202  DLSVNMLEGSLPQNM--SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMI 259
             L  N L G++P+++    +L +L LG N L G +P   F +L+ LT LEL  N  +G I
Sbjct: 433  SLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELF-NLQNLTALELHQNWLSGNI 491

Query: 260  PQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLST 319
               LG  ++L  L LA N   G +P ++G+L  +   N+  N+L+G IP +      +  
Sbjct: 492  SADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQR 551

Query: 320  MNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTI 379
            +++S N  SG I   L  L  L  L L  N L G IP+S  ++  L+ELQLGGN LS  I
Sbjct: 552  LDLSGNKFSGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSENI 611

Query: 380  PMMPPRL---QIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLT 436
            P+   +L   QI+LN+S N   G IP +   L  LE+L L++N+ SGEIP  +  + +L 
Sbjct: 612  PVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLL 671

Query: 437  QLLLTNNQLSGVVPK---FSKWVSVDTTGNLKLINVTAPDTSP--------------EKR 479
               ++NN L G VP    F +  S +  GN  L N       P                +
Sbjct: 672  ICNISNNNLVGTVPDTAVFQRMDSSNFAGNHGLCNSQRSHCQPLVPHSDSKLNWLINGSQ 731

Query: 480  RKSVVVPIVIALAAAILAVGVVSIFVLSISRRFYRVKDEHLQLGEDISSPQVIQGNLLTG 539
            R+ ++    I + +  L      I  L +     R +   + L ED + P V+       
Sbjct: 732  RQKILTITCIVIGSVFL------ITFLGLCWTIKRREPAFVAL-EDQTKPDVMDSYYFPK 784

Query: 540  NGI-HRSNIDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGS 598
             G  ++  +D T+          V  +    T YKA M  G    +KKLN   +     S
Sbjct: 785  KGFTYQGLVDATRNFSEDV----VLGRGACGTVYKAEMSGGEVIAVKKLNSRGE--GASS 838

Query: 599  HHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENAL-DWA 657
             + F  E+  LGK+ + N++    +    +S  L YEY  KG+L + L    +N L DW 
Sbjct: 839  DNSFRAEISTLGKIRHRNIVKLYGFCYHQNSNLLLYEYMSKGSLGEQLQRGEKNCLLDWN 898

Query: 658  SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
            +RY IA+G A+GL +LH      I+  D+ + NI L    +  +GD  L K+ID S S  
Sbjct: 899  ARYRIALGAAEGLCYLHHDCRPQIVHRDIKSNNILLDERFQAHVGDFGLAKLIDLSYSK- 957

Query: 718  SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVN---QGNELAKWVLR 774
            S+S VAGS GYI PEYAYTM+VT   ++YSFGV+LLEL+TGK  V    QG +L  WV R
Sbjct: 958  SMSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKPPVQPLEQGGDLVNWVRR 1017

Query: 775  NSAQQ----DKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLL 830
            +        +  D  LD N  RT      +M  VLK+A+ C S SP +RP M+ V+ M+ 
Sbjct: 1018 SIRNMIPTIEMFDARLDTNDKRTV----HEMSLVLKIALFCTSNSPASRPTMREVVAMIT 1073

Query: 831  NAR 833
             AR
Sbjct: 1074 EAR 1076

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  382 bits (982), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 299/872 (34%), Positives = 448/872 (51%), Gaps = 73/872 (8%)

Query: 2    QSCGGIDGLKLLNFSKNELV-SLPTFNG-FAGLEVLDFSSNNLNGNINLQFDELVSLKSL 59
            +  G    LK+L  +  ++  SLP   G  + L+ L   S  L+G I  +      L +L
Sbjct: 221  EEIGNCRNLKVLGLAATKISGSLPVSLGQLSKLQSLSVYSTMLSGEIPKELGNCSELINL 280

Query: 60   NLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVP 119
             L  N  +G LP  LGK + LE+++L  N  HG IP+ I   ++L  IDLS N  SG++P
Sbjct: 281  FLYDNDLSGTLPKELGKLQNLEKMLLWQNNLHGPIPEEIGFMKSLNAIDLSMNYFSGTIP 340

Query: 120  DRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDL 179
               G LS L+ L+LS+NN+ G +P+ L++ T L +F  + N+ SG +P  I   L+ L++
Sbjct: 341  KSFGNLSNLQELMLSSNNITGSIPSILSNCTKLVQFQIDANQISGLIPPEIG-LLKELNI 399

Query: 180  ---SYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSP--NLVRLRLGTNLLIGEI 234
                 NKL G IP +L    NLQ +DLS N L GSLP  +    NL +L L +N + G I
Sbjct: 400  FLGWQNKLEGNIPDELAGCQNLQALDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISGVI 459

Query: 235  PSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQ 294
            P     +   L  L L NN  TG IP+ +G  ++L+ L+L++N L+G +P+++ +   LQ
Sbjct: 460  P-LEIGNCTSLVRLRLVNNRITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQ 518

Query: 295  VMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGS 354
            ++NL  N L G +P   S L  L  +++S N L+G IP  L +L +L  L L +N+ NG 
Sbjct: 519  MLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGE 578

Query: 355  IPNSITNMRSLIELQLGGNQLSGTIP---MMPPRLQIALNLSSNLFEGPIPTTFARLNGL 411
            IP+S+ +  +L  L L  N +SGTIP        L IALNLS N  +G IP   + LN L
Sbjct: 579  IPSSLGHCTNLQLLDLSSNNISGTIPEELFDIQDLDIALNLSWNSLDGFIPERISALNRL 638

Query: 412  EVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPK---FSKWVSVDTTGNLKLIN 468
             VLD+S+N  SG++   L+ +  L  L +++N+ SG +P    F + +  +  GN  L +
Sbjct: 639  SVLDISHNMLSGDL-SALSGLENLVSLNISHNRFSGYLPDSKVFRQLIGAEMEGNNGLCS 697

Query: 469  --------VTAPDTSPEKRRKSVVVPIVIALAAAILAVGVVSIFVLSISRRFYRVKDEH- 519
                      +   + ++   S  + I I L  ++ AV  V + VL++ R    ++D++ 
Sbjct: 698  KGFRSCFVSNSSQLTTQRGVHSHRLRIAIGLLISVTAVLAV-LGVLAVIRAKQMIRDDND 756

Query: 520  LQLGEDISSPQVIQGNLLTGNGIHRSNIDFTKAMEAVANPL---NVELKTRFSTYYKAVM 576
             + GE          NL T        ++FT  +E V   L   NV  K      YKA M
Sbjct: 757  SETGE----------NLWTWQFTPFQKLNFT--VEHVLKCLVEGNVIGKGCSGIVYKAEM 804

Query: 577  PSGMSYFIKKL------NWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA 630
            P+     +KKL      N ++K    G    F  E++ LG + + N++  L      ++ 
Sbjct: 805  PNREVIAVKKLWPVTVPNLNEKTKSSGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNKNTR 864

Query: 631  YLFYEYAPKGTLFDVLHG----CLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL 686
             L Y+Y   G+L  +LH     C   +L W  RY I +G AQGLA+LH     PI+  D+
Sbjct: 865  LLMYDYMSNGSLGSLLHERSGVC---SLGWEVRYKIILGAAQGLAYLHHDCVPPIVHRDI 921

Query: 687  STRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVY 746
               NI +    EP IGD  L K++D      S +T+AGS GYI PEY Y+M++T   +VY
Sbjct: 922  KANNILIGPDFEPYIGDFGLAKLVDDGDFARSSNTIAGSYGYIAPEYGYSMKITEKSDVY 981

Query: 747  SFGVILLELLTGKTAVN----QGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVR---- 798
            S+GV++LE+LTGK  ++     G  +  WV +          I D  V    L  R    
Sbjct: 982  SYGVVVLEVLTGKQPIDPTIPDGLHIVDWVKK----------IRDIQVIDQGLQARPESE 1031

Query: 799  -SQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
              +M+  L VA+ C++  PE RP MK V  ML
Sbjct: 1032 VEEMMQTLGVALLCINPIPEDRPTMKDVAAML 1063

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  382 bits (980), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 268/834 (32%), Positives = 430/834 (51%), Gaps = 44/834 (5%)

Query: 32   LEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFH 91
            L+      NNL G +  +   L  L+ + L +N+F+G +P+ +G    L+E+   GN   
Sbjct: 411  LQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLS 470

Query: 92   GEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITT 151
            GEIP  I   ++LT + L  N L G++P  +G   ++ V+ L+ N L G +P+S   +T 
Sbjct: 471  GEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTA 530

Query: 152  LSRFAANQNKFSGSVPGGITRF--LRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLE 209
            L  F    N   G++P  +     L  ++ S NK  G I   L    +  + D++ N  E
Sbjct: 531  LELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSIS-PLCGSSSYLSFDVTENGFE 589

Query: 210  GSLPQNM--SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCR 267
            G +P  +  S NL RLRLG N   G IP  TF  + +L+ L++  NS +G+IP +LG C+
Sbjct: 590  GDIPLELGKSTNLDRLRLGKNQFTGRIPR-TFGKISELSLLDISRNSLSGIIPVELGLCK 648

Query: 268  SLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSL 327
             LT ++L  N L+G +P  LG L +L  + L  NK  G +P++   L  + T+ +  NSL
Sbjct: 649  KLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSL 708

Query: 328  SGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPR-- 385
            +GSIP  + NL  L  LNL +N L+G +P++I  +  L EL+L  N L+G IP+   +  
Sbjct: 709  NGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQ 768

Query: 386  -LQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQ 444
             LQ AL+LS N F G IP+T + L  LE LDLS+N+  GE+P  +  M +L  L L+ N 
Sbjct: 769  DLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNN 828

Query: 445  LSGVVPK-FSKWVSVDTTGNLKLIN--VTAPDTSPEKRRKS------VVVPIVIALAAAI 495
            L G + K FS+W +    GN  L    ++  + +  K ++S      V++  + +LAA  
Sbjct: 829  LEGKLKKQFSRWQADAFVGNAGLCGSPLSHCNRAGSKNQRSLSPKTVVIISAISSLAAIA 888

Query: 496  LAVGVVSIFVLSISRRFYRVKDEHLQLGEDISSPQVIQGNLLTGNGIHRSNIDFTKAMEA 555
            L V V+ +F       F +V+  +     + SS Q      L  NG  +S+I +   MEA
Sbjct: 889  LMVLVIILFFKQNHDLFKKVRGGNSAFSSNSSSSQAP----LFSNGGAKSDIKWDDIMEA 944

Query: 556  VANPLNVEL---KTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL 612
              + LN E           YKA + +G +  +KK+ W D +    S+  F++E++ LG +
Sbjct: 945  T-HYLNEEFMIGSGGSGKVYKAELKNGETIAVKKILWKDDLM---SNKSFNREVKTLGTI 1000

Query: 613  SNSNVMTPLAYVLASDSA--YLFYEYAPKGTLFDVLHG----CLENALDWASRYSIAVGV 666
             + +++  + Y  +       L YEY   G+++D LH       +  L W +R  IA+G+
Sbjct: 1001 RHRHLVKLMGYCSSKADGLNLLIYEYMANGSVWDWLHANENTKKKEVLGWETRLKIALGL 1060

Query: 667  AQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV--AG 724
            AQG+ +LH     PI+  D+ + N+ L S  E  +GD  L K++  +  T + S    AG
Sbjct: 1061 AQGVEYLHYDCVPPIVHRDIKSSNVLLDSNIEAHLGDFGLAKILTGNYDTNTESNTMFAG 1120

Query: 725  SVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK----TAVNQGNELAKW---VLRNSA 777
            S GYI PEYAY+++ T   +VYS G++L+E++TGK       ++  ++ +W   VL    
Sbjct: 1121 SYGYIAPEYAYSLKATEKSDVYSMGIVLMEIVTGKMPTEAMFDEETDMVRWVETVLDTPP 1180

Query: 778  QQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN 831
              +  + ++D  +             VL++A+ C    P+ RP  +     LLN
Sbjct: 1181 GSEAREKLIDSELKSLLPCEEEAAYQVLEIALQCTKSYPQERPSSRQASEYLLN 1234

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 285/855 (33%), Positives = 420/855 (49%), Gaps = 100/855 (11%)

Query: 32   LEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFH 91
            LE L   +  ++G I         L  L L +N  +G +P  +G+   LE+L L  N+  
Sbjct: 252  LETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLV 311

Query: 92   GEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTS------ 145
            G IP+ I +  NL +IDLS N LSGS+P  IG LS LE  ++S N   G +PT+      
Sbjct: 312  GGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSS 371

Query: 146  ------------------LASITTLSRFAANQNKFSGSVPGGITRF--LRNLDLSYNKLL 185
                              L ++T L+ F A  N+  GS+P G+     L+ LDLS N L 
Sbjct: 372  LVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLT 431

Query: 186  GVIPIDLLSHPNLQTIDLSVNMLEGSLPQNM--SPNLVRLRLGTNLLIGEIPSATFTSLE 243
            G IP  L    NL  + L  N L G +PQ +    +LVRLRLG N + GEIPS    SL+
Sbjct: 432  GTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSG-IGSLK 490

Query: 244  KLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKL 303
            K+ +L+  +N   G +P ++GSC  L +++L+ N L GSLP  + SL  LQV+++  N+ 
Sbjct: 491  KINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQF 550

Query: 304  SGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMR 363
            SG+IP+   +L  L+ + +S N  SGSIP+ L   + L  L+L  N L+G IP+ + ++ 
Sbjct: 551  SGKIPASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIE 610

Query: 364  SLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSG 423
            +L                     +IALNLSSN   G IP+  A LN L +LDLS+N   G
Sbjct: 611  NL---------------------EIALNLSSNRLTGKIPSKIASLNKLSILDLSHNMLEG 649

Query: 424  EIPQLLAQMPTLTQLLLTNNQLSGVVPK---FSKWVSVDTTGNLKLINVT---------- 470
            ++  L A +  L  L ++ N  SG +P    F +    D  GN KL + T          
Sbjct: 650  DLAPL-ANIENLVSLNISYNSFSGYLPDNKLFRQLSPQDLEGNKKLCSSTQDSCFLTYRK 708

Query: 471  ----APDTSPEKRRKSVVVPIVIALAAAILAVGVVSIFVLSISRRFYRVKDEHLQLGEDI 526
                  D    + RK  +   ++     +L + + ++ V+   R     +D   +LGE  
Sbjct: 709  GNGLGDDGDASRTRKLRLTLALLITLTVVLMI-LGAVAVIRARRNIDNERDS--ELGETY 765

Query: 527  SSPQVIQGNLLTGNGIHRSNIDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKK 586
                             + N    + +  +  P NV  K      Y+A + +G    +KK
Sbjct: 766  K---------WQFTPFQKLNFSVDQIIRCLVEP-NVIGKGCSGVVYRADVDNGEVIAVKK 815

Query: 587  LNWSDKIFQLGSHHK--------FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAP 638
            L W   +   G H +        F  E++ LG + + N++  L      ++  L Y+Y P
Sbjct: 816  L-WPAMVN--GGHDEKTKNVRDSFSAEVKTLGTIRHKNIVRFLGCCWNRNTRLLMYDYMP 872

Query: 639  KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE 698
             G+L  +LH    ++LDW  RY I +G AQGLA+LH     PI+  D+   NI +    E
Sbjct: 873  NGSLGSLLHERRGSSLDWDLRYRILLGAAQGLAYLHHDCLPPIVHRDIKANNILIGLDFE 932

Query: 699  PQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTG 758
            P I D  L K++D        +TVAGS GYI PEY Y+M++T   +VYS+GV++LE+LTG
Sbjct: 933  PYIADFGLAKLVDEGDIGRCSNTVAGSYGYIAPEYGYSMKITEKSDVYSYGVVVLEVLTG 992

Query: 759  KTAVN----QGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSV 814
            K  ++    +G  L  WV +N    + LD  L    SRT  A   +M+ VL  A+ CV+ 
Sbjct: 993  KQPIDPTVPEGIHLVDWVRQNRGSLEVLDSTLR---SRTE-AEADEMMQVLGTALLCVNS 1048

Query: 815  SPEARPKMKSVLRML 829
            SP+ RP MK V  ML
Sbjct: 1049 SPDERPTMKDVAAML 1063

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SYQ8|CLV1_ARATH Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3

 Score =  365 bits (936), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 279/881 (31%), Positives = 440/881 (49%), Gaps = 90/881 (10%)

Query: 10  LKLLNFSKNELVSLPTFNG-----FAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKN 64
           LK+LN S N  ++  TF G        LEVLD  +NN NG +  +  EL  LK L+   N
Sbjct: 120 LKVLNISNNGNLT-GTFPGEILKAMVDLEVLDTYNNNFNGKLPPEMSELKKLKYLSFGGN 178

Query: 65  KFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSA-NNLSGSVPDRIG 123
            F+G +P + G  ++LE L L+G    G+ P  ++  +NL  + +   N+ +G VP   G
Sbjct: 179 FFSGEIPESYGDIQSLEYLGLNGAGLSGKSPAFLSRLKNLREMYIGYYNSYTGGVPPEFG 238

Query: 124 ELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRF--LRNLDLSY 181
            L+KLE+L +++  L G +PTSL+++  L     + N  +G +P  ++    L++LDLS 
Sbjct: 239 GLTKLEILDMASCTLTGEIPTSLSNLKHLHTLFLHINNLTGHIPPELSGLVSLKSLDLSI 298

Query: 182 NKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSP----------------------- 218
           N+L G IP   ++  N+  I+L  N L G +P+ +                         
Sbjct: 299 NQLTGEIPQSFINLGNITLINLFRNNLYGQIPEAIGELPKLEVFEVWENNFTLQLPANLG 358

Query: 219 ---NLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLA 275
              NL++L +  N L G IP       EKL  L L NN F G IP++LG C+SLT + + 
Sbjct: 359 RNGNLIKLDVSDNHLTGLIPK-DLCRGEKLEMLILSNNFFFGPIPEELGKCKSLTKIRIV 417

Query: 276 QNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFL 335
           +N LNG++P  L +L ++ ++ L  N  SGE+P   S   +L  + +S N  SG IP  +
Sbjct: 418 KNLLNGTVPAGLFNLPLVTIIELTDNFFSGELPVTMSG-DVLDQIYLSNNWFSGEIPPAI 476

Query: 336 SNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQ--IALNLS 393
            N  NL  L L +N   G+IP  I  ++ L  +    N ++G IP    R    I+++LS
Sbjct: 477 GNFPNLQTLFLDRNRFRGNIPREIFELKHLSRINTSANNITGGIPDSISRCSTLISVDLS 536

Query: 394 SNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFS 453
            N   G IP     +  L  L++S N+ +G IP  +  M +LT L L+ N LSG VP   
Sbjct: 537 RNRINGEIPKGINNVKNLGTLNISGNQLTGSIPTGIGNMTSLTTLDLSFNDLSGRVPLGG 596

Query: 454 KWVSVDTT---GNLKLI------NVTAPDTSPEKRRKSVVVP--IVIALAAAILAVGVVS 502
           +++  + T   GN  L         T P  + +    ++  P  IVI + AAI  + ++S
Sbjct: 597 QFLVFNETSFAGNTYLCLPHRVSCPTRPGQTSDHNHTALFSPSRIVITVIAAITGLILIS 656

Query: 503 IFVLSISRRFYRVKDEHLQLGEDISSPQVIQGNLLTGNGIHRSNIDFT--KAMEAVANPL 560
           + +  +++     K     L   +++ Q                +DF     +E +    
Sbjct: 657 VAIRQMNK-----KKNQKSLAWKLTAFQ---------------KLDFKSEDVLECLKEE- 695

Query: 561 NVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTP 620
           N+  K      Y+  MP+ +   IK+L          S H F  E++ LG++ + +++  
Sbjct: 696 NIIGKGGAGIVYRGSMPNNVDVAIKRLVGRG---TGRSDHGFTAEIQTLGRIRHRHIVRL 752

Query: 621 LAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNP 680
           L YV   D+  L YEY P G+L ++LHG     L W +R+ +AV  A+GL +LH   S  
Sbjct: 753 LGYVANKDTNLLLYEYMPNGSLGELLHGSKGGHLQWETRHRVAVEAAKGLCYLHHDCSPL 812

Query: 681 ILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVT 740
           IL  D+ + NI L S  E  + D  L K +    ++  +S++AGS GYI PEYAYT++V 
Sbjct: 813 ILHRDVKSNNILLDSDFEAHVADFGLAKFLVDGAASECMSSIAGSYGYIAPEYAYTLKVD 872

Query: 741 MAGNVYSFGVILLELLTGKTAV---NQGNELAKWVLRNSAQQDK-------LDHILDFNV 790
              +VYSFGV+LLEL+ GK  V    +G ++ +WV RN+ ++         +  I+D  +
Sbjct: 873 EKSDVYSFGVVLLELIAGKKPVGEFGEGVDIVRWV-RNTEEEITQPSDAAIVVAIVDPRL 931

Query: 791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN 831
           +   L   + ++ V K+A+ CV     ARP M+ V+ ML N
Sbjct: 932 TGYPL---TSVIHVFKIAMMCVEEEAAARPTMREVVHMLTN 969

Involved in the detection of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristem maintenance. Acts with CLV3 as a ligand-receptor pair in a signal transduction pathway coordinating growth between adjacent meristematic regions and controlling the balance between meristem cell proliferation and differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  365 bits (936), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 296/870 (34%), Positives = 423/870 (48%), Gaps = 85/870 (9%)

Query: 10   LKLLNFSKNELV-SLP-TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFN 67
            LK L+ + N L  S+P    G   LE +D S N L+G I   FD   SL  L L+ N+ N
Sbjct: 355  LKHLSLASNLLSGSIPRELCGSGSLEAIDLSGNLLSGTIEEVFDGCSSLGELLLTNNQIN 414

Query: 68   GFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSK 127
            G +P +L K   L  L L  N F GEIPK +    NL     S N L G +P  IG  + 
Sbjct: 415  GSIPEDLWKL-PLMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGNAAS 473

Query: 128  LEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPG--GITRFLRNLDLSYNKLL 185
            L+ L+LS N L G +P  +  +T+LS    N N F G +P   G    L  LDL  N L 
Sbjct: 474  LKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQ 533

Query: 186  GVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKL 245
            G IP  + +   LQ + LS N L GS+P   S    ++         E+P  +F  L+  
Sbjct: 534  GQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQI---------EMPDLSF--LQHH 582

Query: 246  TYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSG 305
               +L  N  +G IP++LG C  L  ++L+ N L+G +P  L  L  L +++L  N L+G
Sbjct: 583  GIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTG 642

Query: 306  EIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSL 365
             IP +      L  +N++ N L+G IP     L +LV LNL +N L+G +P S+ N++ L
Sbjct: 643  SIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASLGNLKEL 702

Query: 366  IELQLGGNQLSGTIPMMPPRLQ--IALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSG 423
              + L  N LSG +      ++  + L +  N F G IP+    L  LE LD+S N  SG
Sbjct: 703  THMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSG 762

Query: 424  EIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVSVDT-----TGNLKLI-NVTAPDTSPE 477
            EIP  +  +P L  L L  N L G VP  S  V  D      +GN +L   V   D   E
Sbjct: 763  EIPTKICGLPNLEFLNLAKNNLRGEVP--SDGVCQDPSKALLSGNKELCGRVVGSDCKIE 820

Query: 478  KRRKSVVVPIVIALAAAILAVG---VVSIFVLSISR----RFYRVKDEHLQLGEDISSPQ 530
              +      +  A   A L +G   +V +FV S+ R    +  + +D+  ++ E      
Sbjct: 821  GTK------LRSAWGIAGLMLGFTIIVFVFVFSLRRWAMTKRVKQRDDPERMEESRLKGF 874

Query: 531  VIQGNLLTGNGIHRSNIDFTKAMEAVANPLNVELKTR---------------------FS 569
            V Q          R  +    AM     PL   LK R                     F 
Sbjct: 875  VDQNLYFLSGSRSREPLSINIAM--FEQPL---LKVRLGDIVEATDHFSKKNIIGDGGFG 929

Query: 570  TYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS 629
            T YKA +P   +  +KKL+ +    +   + +F  E+E LGK+ + N+++ L Y   S+ 
Sbjct: 930  TVYKACLPGEKTVAVKKLSEA----KTQGNREFMAEMETLGKVKHPNLVSLLGYCSFSEE 985

Query: 630  AYLFYEYAPKGTLFDVLH---GCLENALDWASRYSIAVGVAQGLAFL-HGFTSNPILLLD 685
              L YEY   G+L   L    G LE  LDW+ R  IAVG A+GLAFL HGF  + I+  D
Sbjct: 986  KLLVYEYMVNGSLDHWLRNQTGMLE-VLDWSKRLKIAVGAARGLAFLHHGFIPH-IIHRD 1043

Query: 686  LSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNV 745
            +   NI L    EP++ D  L ++I   +S  S + +AG+ GYIPPEY  + R T  G+V
Sbjct: 1044 IKASNILLDGDFEPKVADFGLARLISACESHVS-TVIAGTFGYIPPEYGQSARATTKGDV 1102

Query: 746  YSFGVILLELLTGKTAV------NQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRS 799
            YSFGVILLEL+TGK         ++G  L  W ++   Q   +D I    V   S+A+++
Sbjct: 1103 YSFGVILLELVTGKEPTGPDFKESEGGNLVGWAIQKINQGKAVDVIDPLLV---SVALKN 1159

Query: 800  QMLTVLKVAVACVSVSPEARPKMKSVLRML 829
              L +L++A+ C++ +P  RP M  VL+ L
Sbjct: 1160 SQLRLLQIAMLCLAETPAKRPNMLDVLKAL 1189

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	833
255571792	954	protein with unknown function [Ricinus c	0.997	0.871	0.688	0.0
224145191	947	predicted protein [Populus trichocarpa]	0.997	0.877	0.704	0.0
359493179	946	PREDICTED: leucine-rich repeat receptor-	0.998	0.879	0.683	0.0
224135907	948	predicted protein [Populus trichocarpa]	0.993	0.873	0.685	0.0
356561355	950	PREDICTED: leucine-rich repeat receptor-	0.995	0.872	0.637	0.0
449465370	915	PREDICTED: leucine-rich repeat receptor-	0.996	0.907	0.603	0.0
449496914	915	PREDICTED: leucine-rich repeat receptor	0.996	0.907	0.604	0.0
356561353	897	PREDICTED: probable leucine-rich repeat	0.972	0.903	0.599	0.0
242085018	965	hypothetical protein SORBIDRAFT_08g00506	0.989	0.853	0.552	0.0
297846442	959	leucine-rich repeat family protein [Arab	0.989	0.859	0.572	0.0

>gi|255571792|ref|XP_002526839.1| protein with unknown function [Ricinus communis] gi|223533843|gb|EEF35574.1| protein with unknown function [Ricinus communis]

 Score = 1129 bits (2919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/836 (68%), Positives = 693/836 (82%), Gaps = 5/836 (0%)

Query: 1   MQSCGGIDGLKLLNFSKNELVS-LPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSL 59
           + SCGGI+GLK LNFS+N L   LPTF+GF GLE LD S N+L+G ++LQ D L +LKSL
Sbjct: 121 ISSCGGINGLKRLNFSRNGLTGVLPTFDGFVGLESLDLSFNSLSGRVDLQLDGLSALKSL 180

Query: 60  NLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVP 119
           NLS NKF G +P+NLGK+  LEE +LS N F GEIP+ I  Y+NL++IDL ANNL GS+P
Sbjct: 181 NLSFNKFTGSVPVNLGKSMMLEEFMLSENFFQGEIPQEIFSYKNLSMIDLGANNLFGSIP 240

Query: 120 DRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDL 179
           + IG  +KL++LILSANNL G +P S+A+I TLSRFAANQN F G +P GITR+L  LDL
Sbjct: 241 NSIGNFTKLQLLILSANNLSGEIPPSIANIPTLSRFAANQNGFFGRIPSGITRYLSYLDL 300

Query: 180 SYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATF 239
           SYNKL G +P DLLS  NL T+DLS N L+G +P+N+S +LVRLRLG+NLL G+IP  +F
Sbjct: 301 SYNKLNGSLPSDLLSQSNLLTVDLSYNTLDGLIPENISQSLVRLRLGSNLLHGQIPR-SF 359

Query: 240 TSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQ 299
            SL+ LTYLELDNNS  G+IP +LGS +SL LLNLAQN LNGSLP+QLG++  LQV+ LQ
Sbjct: 360 PSLQ-LTYLELDNNSLNGVIPAELGSLQSLALLNLAQNNLNGSLPVQLGNISKLQVLKLQ 418

Query: 300 LNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSI 359
           LNK  GEIP   SQL  LST+NISWNSL+G IP  +SNL +L +LNL+ N LNGS+P++I
Sbjct: 419 LNKFDGEIPPSISQLHKLSTLNISWNSLTGPIPFSISNLQDLAHLNLQGNKLNGSLPDNI 478

Query: 360 TNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNN 419
            +M SL+ELQLG NQL G IPMMP +LQIALNLSSNLF+GPIP T ++L  LE+LDLSNN
Sbjct: 479 NSMSSLLELQLGENQLGGRIPMMPTKLQIALNLSSNLFQGPIPNTLSQLKDLEILDLSNN 538

Query: 420 RFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVSVDTTGNLKLINVTAPDTSPE-- 477
           +FSGEIP  L Q+ +LTQL+L+NNQLSG++P+F  WV+++ +GN  LIN T P+TS E  
Sbjct: 539 KFSGEIPDFLTQLQSLTQLILSNNQLSGIIPEFQTWVALNASGNAGLINATKPNTSAELG 598

Query: 478 KRRKSVVVPIVIALAAAILAVGVVSIFVLSISRRFYRVKDEHLQLGEDISSPQVIQGNLL 537
           ++R S  V +++++ +A+LAVGVV+I  L+ SRRF +V D+  Q GED+ +PQVIQGNLL
Sbjct: 599 EKRNSAAVAVILSVVSAVLAVGVVAIVALTFSRRFPKVNDQPSQSGEDLPAPQVIQGNLL 658

Query: 538 TGNGIHRSNIDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLG 597
           T N IHRSNI+F+KAMEAVA+P N+ LKTRFSTYYKA MPSG SYF+KKLNWSDK+FQLG
Sbjct: 659 TANTIHRSNINFSKAMEAVADPRNIVLKTRFSTYYKATMPSGASYFVKKLNWSDKLFQLG 718

Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           +H KFD+EL+VLGKLSNSNVMTPLAYVL  DSAYLFYE+A KGTL DVLHG L +ALDWA
Sbjct: 719 NHDKFDQELKVLGKLSNSNVMTPLAYVLTVDSAYLFYEHAQKGTLLDVLHGKLGHALDWA 778

Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
           SRYSIAVGVAQGL FLHG+TS PILLLDLS+RNI LKSLKEP +GDIEL K+IDP+KSTG
Sbjct: 779 SRYSIAVGVAQGLTFLHGYTSGPILLLDLSSRNILLKSLKEPLVGDIELYKLIDPTKSTG 838

Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSA 777
           S STVAGSVGYIPPEYAYTMRVTMAGNVYSFGV+LLELLTGK AV++G ELAKWVL  S+
Sbjct: 839 SFSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVVLLELLTGKPAVSEGTELAKWVLSKSS 898

Query: 778 QQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR 833
           QQD+ DHILDFN+SRTSLAVR QML +LK+A++CVS+SPEARPKMKSVLRM+LNAR
Sbjct: 899 QQDRWDHILDFNISRTSLAVRGQMLAILKIALSCVSLSPEARPKMKSVLRMILNAR 954

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145191|ref|XP_002325559.1| predicted protein [Populus trichocarpa] gi|222862434|gb|EEE99940.1| predicted protein [Populus trichocarpa]

 Score = 1126 bits (2912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 590/837 (70%), Positives = 688/837 (82%), Gaps = 6/837 (0%)

Query: 1   MQSCGGIDGLKLLNFSKNELV-SLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSL 59
           +  CG IDGLKLLNFSKN L  SLP FN F GLE LD S N+L+GN++LQ D  ++LKSL
Sbjct: 113 INDCGRIDGLKLLNFSKNLLSGSLPAFNVFVGLESLDLSFNSLSGNVSLQVDGFLALKSL 172

Query: 60  NLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVP 119
           NLS NKF G +P+NL K+  LEEL LS N+F G +P+ IA+Y+NL+LIDLSANNL GSVP
Sbjct: 173 NLSSNKFTGPIPVNLRKSLMLEELQLSMNSFQGTVPQEIANYQNLSLIDLSANNLEGSVP 232

Query: 120 DRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDL 179
             IG L+KL +L+LS N L G +P ++++I TL RFAANQNKF G++P GITR+L  LDL
Sbjct: 233 PSIGNLAKLRILLLSGNKLSGEIPANISNIPTLYRFAANQNKFGGTIPSGITRYLSFLDL 292

Query: 180 SYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATF 239
           SYN L G IP DLLS  NLQ +DLS N+LEGSLP  +S +L+RLRLG+N L G IP  +F
Sbjct: 293 SYNSLRGPIPTDLLSGSNLQLVDLSYNLLEGSLPAKVSKSLIRLRLGSNRLYGPIP-PSF 351

Query: 240 TSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQ 299
            +L+KLTYLELDNNS T  IP QL SCRSL LLNLAQN+L G +P  LG+L  LQV+ LQ
Sbjct: 352 GTLDKLTYLELDNNSLTNEIPHQLSSCRSLALLNLAQNDLTGPVPAPLGNLSNLQVLKLQ 411

Query: 300 LNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSI 359
           LN LSG+IP + +QL+LLST+NISWNSL+GSIPS +SNL  L +LNL+ NNL G IP +I
Sbjct: 412 LNNLSGDIPLEITQLQLLSTLNISWNSLTGSIPSSISNLQRLAHLNLQGNNLRGPIPATI 471

Query: 360 TNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNN 419
            +M SL+E+QLG NQLSGTIPMMP +LQIALNLS+NLF+G IP T +RL GLE+LDLSNN
Sbjct: 472 NSMNSLLEVQLGQNQLSGTIPMMPVKLQIALNLSTNLFQGAIPETLSRLTGLEILDLSNN 531

Query: 420 RFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVSVDTTGNLKLINVTA---PDTSP 476
             SGEIP+ L +M +L QL+L+NNQLSGV+P F  +VS++ +GN +L N TA   P  SP
Sbjct: 532 NLSGEIPESLTEMESLNQLILSNNQLSGVIPDFKHYVSLNASGNSRLKNNTATNTPQESP 591

Query: 477 EKRRKSVVVPIVIALAAAILAVGVVSIFVLSISRRFYRVKDEHLQLGEDISSPQVIQGNL 536
           +KRR SVVVP+V+A+ AA LAVG+VSI VLS SRRF +V D+  Q GE++ SPQVIQGNL
Sbjct: 592 KKRR-SVVVPVVVAVVAAFLAVGIVSIIVLSFSRRFLKVNDQQSQSGENLPSPQVIQGNL 650

Query: 537 LTGNGIHRSNIDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQL 596
           LT NGIHRS+IDFT AME  A+PLN+ELKTRFSTYYKA MPSG +YF+KKLNWSDKIFQL
Sbjct: 651 LTTNGIHRSSIDFTNAMEVAADPLNIELKTRFSTYYKATMPSGANYFVKKLNWSDKIFQL 710

Query: 597 GSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDW 656
           GSH+KF +ELEVLGKLSNSNVMTPLAYVL  DSAYLFYEYA KGTLFDVLHG L + LDW
Sbjct: 711 GSHNKFGQELEVLGKLSNSNVMTPLAYVLTVDSAYLFYEYAEKGTLFDVLHGKLGDTLDW 770

Query: 657 ASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST 716
           ASRYSIAVGVAQGL FLHG TS PILLLDLS+RNI LKSLKEP +GDIEL KVIDP+KST
Sbjct: 771 ASRYSIAVGVAQGLTFLHGCTSGPILLLDLSSRNILLKSLKEPLVGDIELHKVIDPTKST 830

Query: 717 GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNS 776
           GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGV+LLELLTGK AV++G ELAKWVLRNS
Sbjct: 831 GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVVLLELLTGKPAVSEGTELAKWVLRNS 890

Query: 777 AQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR 833
            QQD+ D ILDFN+SRTS AVRS M  VLK+A++CVSVS EARPKMKSVLRM+LNAR
Sbjct: 891 TQQDRWDGILDFNISRTSPAVRSHMHAVLKIALSCVSVSTEARPKMKSVLRMILNAR 947

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493179|ref|XP_003634534.1| PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820-like [Vitis vinifera]

 Score = 1099 bits (2842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/840 (68%), Positives = 667/840 (79%), Gaps = 8/840 (0%)

Query: 1   MQSCGGIDGLKLLNFSKNELV-SLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSL 59
           + +CG IDGLK LNFSKN LV SLP FNGF GLE LDFSSN LNG I  Q   L  LK L
Sbjct: 108 ITACGKIDGLKQLNFSKNRLVGSLPAFNGFVGLESLDFSSNKLNGTIVSQLGSLNDLKRL 167

Query: 60  NLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVP 119
            L+ N  +G +PINLG +K LE L+LS N+F G IP G+ +YR L  IDLS N LSG +P
Sbjct: 168 YLTSNYLSGNVPINLGNSKVLEHLILSKNSFTGSIPDGLLEYRKLVRIDLSENQLSGPLP 227

Query: 120 DRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDL 179
            +IG+LSKLE LILS+NNL G +P +L++   L RFAANQNKF G++P GI+R L+NLDL
Sbjct: 228 GKIGDLSKLEELILSSNNLSGEIPMNLSNFQNLLRFAANQNKFIGNIPVGISRSLKNLDL 287

Query: 180 SYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATF 239
           SYNKL G IP DLL   NLQT+DLS N+LEGS+P  +SPN+VRLRLG+N L   IPS   
Sbjct: 288 SYNKLGGQIPTDLLMQSNLQTVDLSYNLLEGSIPAKISPNMVRLRLGSNSLHDTIPSELG 347

Query: 240 TSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQ 299
           T L KLTYLEL+NNS +G IP +LGSCRSL LLNL  N L GSLP++L SL  LQV+ LQ
Sbjct: 348 T-LLKLTYLELENNSLSGSIPSELGSCRSLALLNLGMNYLTGSLPVELASLSSLQVLKLQ 406

Query: 300 LNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSI 359
            NKL GEIP Q SQ++ LS +NIS N LSGSIP  +S L NL NLNL+ N L+GSIP +I
Sbjct: 407 SNKLVGEIPYQISQMQSLSILNISGNLLSGSIPISISRLQNLTNLNLQGNRLSGSIPATI 466

Query: 360 TNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNN 419
            +++ L+ELQLG NQL+G IP MP  LQIALNLS NLFEG IP T +RL GLEVLDLSNN
Sbjct: 467 DSLKYLLELQLGNNQLNGHIPGMPLSLQIALNLSHNLFEGAIPETLSRLQGLEVLDLSNN 526

Query: 420 RFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVSV-DTTGNLKLINVT----APDT 474
           +FSG IP  L ++ +LTQLLL NNQLSGV+P+F K+V++ DTTGN +L+N T    +P +
Sbjct: 527 KFSGAIPTSLTRIGSLTQLLLANNQLSGVIPEFGKYVTIIDTTGNPRLVNRTLQRNSPQS 586

Query: 475 SPEKRRKSVVVPIVIALAAAI-LAVGVVSIFVLSISRRFYRVKDEHLQLGEDISSPQVIQ 533
            P KR+   V  ++    AA  L +GV  +  +SISRRFYRVKDE L   ED+  PQV+Q
Sbjct: 587 FPGKRKSVAVAVVIAVAVAAASLGIGVTVVIAVSISRRFYRVKDEPLGATEDLPPPQVVQ 646

Query: 534 GNLLTGNGIHRSNIDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKI 593
           GNLLT N IHRSNIDFTKAMEAVA+  N+ LKTRFSTYYKAVMPSG SYFIKK+NWSDKI
Sbjct: 647 GNLLTANAIHRSNIDFTKAMEAVASTSNILLKTRFSTYYKAVMPSGRSYFIKKINWSDKI 706

Query: 594 FQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENA 653
           FQLGSH KF +ELE+LGKLSNSNVM PLAYVL  DSAYLFYEYA KGTLFD+LHG   +A
Sbjct: 707 FQLGSHEKFGQELEILGKLSNSNVMMPLAYVLTVDSAYLFYEYAQKGTLFDILHGSFGSA 766

Query: 654 LDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713
           LDWASRYSIAVG+AQGLAFLHG+TS P+LLLDLS+++I LKS+KEPQIGDIEL KVIDPS
Sbjct: 767 LDWASRYSIAVGIAQGLAFLHGYTSGPVLLLDLSSKSIMLKSVKEPQIGDIELYKVIDPS 826

Query: 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVL 773
           KSTGS+STVAGSVGY+PPEYAYTMRVTMAGNVYSFGVILLELLTGK  V++G ELA+WVL
Sbjct: 827 KSTGSVSTVAGSVGYVPPEYAYTMRVTMAGNVYSFGVILLELLTGKPPVSEGTELARWVL 886

Query: 774 RNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR 833
            N+AQ+DK D ILDF++SRTSLAVR+QML VLKVA+ CVSV PEARPKMKSVLRMLLNAR
Sbjct: 887 NNTAQRDKWDRILDFSISRTSLAVRNQMLAVLKVALGCVSVVPEARPKMKSVLRMLLNAR 946

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135907|ref|XP_002327333.1| predicted protein [Populus trichocarpa] gi|222835703|gb|EEE74138.1| predicted protein [Populus trichocarpa]

 Score = 1072 bits (2771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/834 (68%), Positives = 676/834 (81%), Gaps = 6/834 (0%)

Query: 4   CGGIDGLKLLNFSKNELVS-LPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLS 62
           CG IDGLKLLN S+N+L   LPTFNGF GLE LD S N+L+GN++ Q D L++LKSLNLS
Sbjct: 117 CGRIDGLKLLNISQNKLDGPLPTFNGFVGLEFLDLSFNSLSGNVSPQLDGLLALKSLNLS 176

Query: 63  KNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRI 122
            NKF+G LP+N+GK+  LE L LS N F G IP+ IA+ +NL++ID S N L GS+P RI
Sbjct: 177 FNKFSGPLPVNVGKSLLLESLQLSMNHFQGTIPQDIANCQNLSVIDFSGNALDGSIPSRI 236

Query: 123 GELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYN 182
           G L KL  LILS+NNL G +P ++++I TL RFAANQNKF G +P GITR+L   DLS+N
Sbjct: 237 GNLKKLRFLILSSNNLSGDIPANISNIPTLFRFAANQNKFDGKIPSGITRYLTLFDLSFN 296

Query: 183 KLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSL 242
           KL G IP D+LS   LQ +DLS N L+GS+P ++S +L+RLRLG N L G IPS+ F SL
Sbjct: 297 KLRGPIPGDILSQSKLQLVDLSYNQLDGSIPSSISASLLRLRLGGNNLNGSIPSS-FDSL 355

Query: 243 EKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNK 302
           E LTYLELDNN  TG+IP +LGSC+SL LLNLAQN+L GS+P  LG+L  LQV+ LQ N 
Sbjct: 356 ENLTYLELDNNRLTGVIPPELGSCQSLALLNLAQNDLAGSVPSLLGNLNDLQVLKLQHNN 415

Query: 303 LSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNM 362
           L GEIPS+ ++L+ LS +NISWNSL+GSIPS +SNL +L +LNL+ N L G IP ++ +M
Sbjct: 416 LVGEIPSEITRLQKLSILNISWNSLTGSIPSSISNLQSLAHLNLQCNKLQGPIPATVNSM 475

Query: 363 RSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFS 422
            SL+ELQLG NQL+GTIP+MP +LQI+LNLSSNLF+GPIP T +RL  LEVLDLSNN FS
Sbjct: 476 NSLLELQLGQNQLNGTIPLMPVKLQISLNLSSNLFQGPIPGTLSRLKDLEVLDLSNNNFS 535

Query: 423 GEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVSVDTTGNLKLINVTA---PDTSPEKR 479
           GEIP    +M +L QL+L+NNQLSGV+P F  +VS+   GN  LIN TA   P  SP K+
Sbjct: 536 GEIPSSFTEMESLNQLILSNNQLSGVIPGFKPYVSLSARGNAGLINKTATITPQESP-KK 594

Query: 480 RKSVVVPIVIALAAAILAVGVVSIFVLSISRRFYRVKDEHLQLGEDISSPQVIQGNLLTG 539
            KSV VP+V+A+ AA+LAVG VSI V+S+SRRF +V ++  Q GE++  PQVI+G LLT 
Sbjct: 595 GKSVAVPVVLAVVAAVLAVGAVSIIVVSLSRRFLKVNNQQSQSGEELPPPQVIEGILLTT 654

Query: 540 NGIHRSNIDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSH 599
           NGIHRSNIDFTK ME  A+PLN+ELKTRFSTYYKA MPSG  YF+KKLNWSDKIFQLGSH
Sbjct: 655 NGIHRSNIDFTKTMEIAADPLNIELKTRFSTYYKATMPSGARYFVKKLNWSDKIFQLGSH 714

Query: 600 HKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
           HKF +ELE LGKLSNSNVMTPLAYVL+ DSAYLFYEYA KGTLF VLHG L +ALDWASR
Sbjct: 715 HKFGQELEDLGKLSNSNVMTPLAYVLSMDSAYLFYEYAEKGTLFYVLHGKLGDALDWASR 774

Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
           YSIAVGVAQGL FLHG TS PILLLDLS++NIFLKSLKEP +GDIEL KVIDP+KSTGSL
Sbjct: 775 YSIAVGVAQGLTFLHGCTSGPILLLDLSSQNIFLKSLKEPLVGDIELHKVIDPTKSTGSL 834

Query: 720 STVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQ 779
           STVAGSVGYIPPEYAYTMRVTMAGNVYSFGV+LLELLTGK AV++G ELAKWVL  S QQ
Sbjct: 835 STVAGSVGYIPPEYAYTMRVTMAGNVYSFGVVLLELLTGKPAVSEGTELAKWVLSKSKQQ 894

Query: 780 DKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR 833
           DK DHILD+N+SRTS AVR QML VLK+A++CVSVS EARPKMKSVLR+++NAR
Sbjct: 895 DKWDHILDYNISRTSPAVRGQMLAVLKIALSCVSVSTEARPKMKSVLRLIVNAR 948

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561355|ref|XP_003548948.1| PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820-like [Glycine max]

 Score =  991 bits (2562), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/842 (63%), Positives = 635/842 (75%), Gaps = 13/842 (1%)

Query: 1   MQSCGGIDGLKLLNFSKNELV-SLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSL 59
           +  CG I GLK LNFS N L   LP+F+GF  LE LD S NNL G+I +Q D LVSLKSL
Sbjct: 113 ITECGKIKGLKKLNFSGNMLGGDLPSFHGFDALESLDMSFNNLEGSIGIQLDGLVSLKSL 172

Query: 60  NLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVP 119
           NL+ N F+G +P  LG +  LE LVLS N F G+IP  +  Y NLT +D  AN LSGS+P
Sbjct: 173 NLTFNNFSGSIPTKLGNSTVLEHLVLSVNHFGGKIPDELLSYENLTEVDFRANLLSGSIP 232

Query: 120 DRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDL 179
             IG+LS LE L+LS+NNL G +P SL ++T LSRFAANQN F G VP GIT  L +LDL
Sbjct: 233 SNIGKLSNLESLVLSSNNLTGEIPASLLNLTKLSRFAANQNNFIGPVPPGITNHLTSLDL 292

Query: 180 SYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATF 239
           S+NKL G IP DLLS   LQ +DLS NML GS+P   SPNL RLR G+N L G IP   F
Sbjct: 293 SFNKLSGPIPEDLLSPSQLQAVDLSNNMLNGSVPTKFSPNLFRLRFGSNHLSGNIPPGAF 352

Query: 240 TSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQ 299
            ++  LTYLELDNN  TG IP +L SCR L LLNLAQN L G LP  LG+L  LQV+ LQ
Sbjct: 353 AAVPNLTYLELDNNDLTGTIPAELDSCRKLALLNLAQNHLTGVLPPLLGNLTNLQVLRLQ 412

Query: 300 LNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSI 359
           +N+L+G IP +  QL  LS +N+SWNSL GSIPS ++NL+NL  LN++ NNL+GSIP SI
Sbjct: 413 MNELNGTIPIEIGQLHKLSILNLSWNSLGGSIPSEITNLSNLNFLNMQSNNLSGSIPTSI 472

Query: 360 TNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNN 419
            N++ LIELQLG NQLSG IP+MP  LQ +LNLSSN   G IP++F  L+GLEVLDLSNN
Sbjct: 473 ENLKLLIELQLGENQLSGVIPIMPRSLQASLNLSSNHLSGNIPSSFDILDGLEVLDLSNN 532

Query: 420 RFSGEIPQLLAQMPTLTQ-LLLTNNQLSGVVPKFSKWVSVDTTGNLKLINVTAPD----- 473
           + SG IP+ L  M +LTQ LL  N  LSG +PKFS+ V V  +G   LIN T+PD     
Sbjct: 533 KLSGPIPKELTGMSSLTQLLLANNALLSGEIPKFSQHVEVVYSGT-GLINNTSPDNPIAN 591

Query: 474 --TSPEKRRKSVVVPIVIALAAAILAVGVVSIFVLSISRRFYRVKDEHLQLGEDISSPQV 531
              +  K+  SV V ++IA+ AAI+ VG+V++ V+S+SR +YRV DEHL   ED   PQV
Sbjct: 592 RPNTVSKKGISVAVAVLIAIVAAIVLVGLVTLLVVSVSRHYYRVNDEHLPSREDHQHPQV 651

Query: 532 IQGNLLTGNGIHRSNIDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSD 591
           I+  LLT NGIHRS+IDF+KAME VA   N+ LKTRFSTYYKA+MPSG  YF+KKLNWSD
Sbjct: 652 IESKLLTPNGIHRSSIDFSKAMEVVAEASNITLKTRFSTYYKAIMPSGSMYFVKKLNWSD 711

Query: 592 KIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLE 651
           KI  +GSH KF KELEVL KL+NSNVMTPL YVL++D+AY+ YE+   G+LFDVLHG +E
Sbjct: 712 KILSVGSHDKFVKELEVLAKLNNSNVMTPLGYVLSTDTAYILYEFMSNGSLFDVLHGSME 771

Query: 652 NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
           N+LDWASRYSIAVGVAQGL+FLHGFTS+PILLLDLS+++I LKSLKEP +GDIE  KVID
Sbjct: 772 NSLDWASRYSIAVGVAQGLSFLHGFTSSPILLLDLSSKSIMLKSLKEPLVGDIEHYKVID 831

Query: 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKW 771
           PSKSTG+ S VAGSVGYIPPEYAYTM VTMAGNVYSFGVILLELLTGK AV +G EL KW
Sbjct: 832 PSKSTGNFSAVAGSVGYIPPEYAYTMTVTMAGNVYSFGVILLELLTGKPAVTEGTELVKW 891

Query: 772 VLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN 831
           V+RNS  Q   D+ILDFNVSRTS AVR+QML +L++A  CVS SPE+RPKMKSVLRMLLN
Sbjct: 892 VVRNSTNQ---DYILDFNVSRTSQAVRNQMLAILEIARVCVSTSPESRPKMKSVLRMLLN 948

Query: 832 AR 833
           AR
Sbjct: 949 AR 950

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465370|ref|XP_004150401.1| PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820-like [Cucumis sativus]

 Score =  921 bits (2381), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/842 (60%), Positives = 627/842 (74%), Gaps = 12/842 (1%)

Query: 1   MQSCGGIDGLKLLNFSKNELV-SLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSL 59
           ++ CGGI GL  LNFS N L  SLP F GF  LE+LD S N +NG + LQ DELV+LK L
Sbjct: 77  IKDCGGISGLSKLNFSNNGLDGSLPRFVGFKRLEILDLSINFMNGTVGLQLDELVNLKCL 136

Query: 60  NLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVP 119
           NLS N F+G +P  +GK  +LE+L LS N F G I + I +Y NLT IDLSAN+LSGS+P
Sbjct: 137 NLSSNSFSGPVPTKIGKNNSLEQLQLSKNKFQGTISEVITNYTNLTFIDLSANDLSGSLP 196

Query: 120 DRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDL 179
            +IG LSKLE LILSAN+  G +P S++ I++L R AA+QN F+G++P GIT +++NLDL
Sbjct: 197 LQIGRLSKLEFLILSANDFHGEIPESVSRISSLVRLAAHQNSFTGNIPNGITNYVKNLDL 256

Query: 180 SYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSP--NLVRLRLGTNLLIGEIPSA 237
           SYN + G IP+ LLS P L+T+DLS N L G +P + S   NLVRLRLG+N+L G IP  
Sbjct: 257 SYNNMTGSIPVGLLSKPQLETVDLSQNKLVGPIPGDFSSSSNLVRLRLGSNMLDGTIP-K 315

Query: 238 TFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMN 297
           TF +L+KL Y+ELDNN  TG+IP +LG+C+SL LLNLA N L G LP Q G L  LQ + 
Sbjct: 316 TFGNLQKLMYMELDNNKLTGVIPDELGACKSLLLLNLAHNNLWGRLPTQFGHLQGLQALI 375

Query: 298 LQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPN 357
           L+ N LSGE P +  QLK L+ +NI WNSL+GSIPS +S L  LV +NL+ N  +G IP+
Sbjct: 376 LESNNLSGEFPLEIMQLKNLTVLNIGWNSLNGSIPSSISVLQKLVKMNLQGNYFSGVIPD 435

Query: 358 SITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLS 417
           +I +M SL+ELQLG NQL+  IP MP  L IALNLS+N FEG IP +F  L  L VLDLS
Sbjct: 436 TIGSMSSLLELQLGRNQLASPIPKMPENLDIALNLSNNHFEGLIPNSFRGLIKLVVLDLS 495

Query: 418 NNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVSVDTTGNLKLINVTAPDT-SP 476
           NNRFSG+IP  L Q+ +LT+L L+NNQLSGV+P F  WVS+   GN  LIN +  DT S 
Sbjct: 496 NNRFSGKIPSFLVQLLSLTELNLSNNQLSGVIPPFRNWVSLGIKGNPNLINESTFDTPSF 555

Query: 477 EKR---RKSVVVPIVIALAAAILAVGVVSIFVLSISRRFYRVKDEHLQLGEDISSPQVIQ 533
           EK+   RK +VV I++ + A  ++  +V  F++ + RR ++      Q+ ED     VIQ
Sbjct: 556 EKKVKPRKPIVVSIIVVVVAFFISSALV-FFIIFMWRRNWKGNTNESQV-EDAPMTTVIQ 613

Query: 534 GNLLTGNGIHRSNIDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKI 593
           G LL+ + IHRSNIDF +AM+AV+ P N+ +KTRFS YYK VMP    YF+KKL WSDKI
Sbjct: 614 GKLLSLSVIHRSNIDFAEAMKAVSEPSNISVKTRFSAYYKVVMPCESIYFVKKLKWSDKI 673

Query: 594 FQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENA 653
            Q  SH KF K+LEVLG+LSNSN+MTPLAY L ++SAYLF+EYAPKGTLFDVLHGC  N 
Sbjct: 674 CQPESHDKFGKQLEVLGRLSNSNIMTPLAYALTTESAYLFFEYAPKGTLFDVLHGCPGNI 733

Query: 654 LDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713
           LDW++RYSIA+G AQGL FLHG  S P+LLLDLS+++IFLKSLKEPQIGDIELCKVIDP 
Sbjct: 734 LDWSARYSIAIGAAQGLTFLHGCASGPVLLLDLSSKSIFLKSLKEPQIGDIELCKVIDPL 793

Query: 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVL 773
           KSTGS+S VAGSVGYIPPEYAYTM+V+ AGNVYSFGV+LLELL+GKTAV++G ELAK VL
Sbjct: 794 KSTGSVSMVAGSVGYIPPEYAYTMKVSSAGNVYSFGVVLLELLSGKTAVSEGAELAKTVL 853

Query: 774 R-NSAQQDKLD-HILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN 831
             +S Q  K +  ILD ++S+TS  V+SQM  VLKVAV+CVS SPE RPKMK+VLRMLLN
Sbjct: 854 SYHSKQHQKWELQILDNSISKTSSYVQSQMGAVLKVAVSCVSPSPEDRPKMKTVLRMLLN 913

Query: 832 AR 833
           AR
Sbjct: 914 AR 915

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449496914|ref|XP_004160261.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Cucumis sativus]

 Score =  921 bits (2380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/842 (60%), Positives = 627/842 (74%), Gaps = 12/842 (1%)

Query: 1   MQSCGGIDGLKLLNFSKNELV-SLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSL 59
           ++ CGGI GL  LNFS N L  SLP F GF  LE+LD S N +NG + LQ DELV+LK L
Sbjct: 77  IKDCGGISGLTKLNFSNNGLDGSLPRFVGFKRLEILDLSINFMNGTVGLQLDELVNLKCL 136

Query: 60  NLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVP 119
           NLS N F+G +P  +GK  +LE+L LS N F G I + I +Y NLT IDLSAN+LSGS+P
Sbjct: 137 NLSSNSFSGPVPTKIGKNNSLEQLQLSKNKFQGTISEVITNYTNLTFIDLSANDLSGSLP 196

Query: 120 DRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDL 179
            +IG LSKLE LILSAN+  G +P S++ I++L R AA+QN F+G++P GIT +++NLDL
Sbjct: 197 LQIGRLSKLEFLILSANDFHGEIPESVSRISSLVRLAAHQNSFTGNIPNGITNYVKNLDL 256

Query: 180 SYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSP--NLVRLRLGTNLLIGEIPSA 237
           SYN + G IPI LLS P L+T+DLS N L G +P + S   NLVRLRLG+N+L G IP  
Sbjct: 257 SYNNMTGSIPIGLLSKPQLETVDLSQNKLVGPIPGDFSSSSNLVRLRLGSNMLDGTIP-K 315

Query: 238 TFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMN 297
           TF +L+KL Y+ELDNN  TG+IP +LG+C+SL LLNLA N L G LP Q G L  L+ + 
Sbjct: 316 TFGNLQKLMYMELDNNKLTGVIPDELGACKSLLLLNLAHNNLWGRLPTQFGHLQGLEALI 375

Query: 298 LQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPN 357
           L+ N LSGE P +  QLK L+ +NI WNSL+GSIPS +S L  LV +NL+ N  +G IP+
Sbjct: 376 LESNNLSGEFPLEIMQLKNLTVLNIGWNSLNGSIPSSISVLQKLVKMNLQGNYFSGVIPD 435

Query: 358 SITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLS 417
           +I +M SL+ELQLG NQL+  IP MP  L IALNLS+N FEG IP +F  L  L VLDLS
Sbjct: 436 TIGSMSSLLELQLGRNQLASPIPKMPENLDIALNLSNNHFEGLIPNSFRGLIKLVVLDLS 495

Query: 418 NNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVSVDTTGNLKLINVTAPDT-SP 476
           NNRFSG+IP  L Q+ +LT+L L+NNQLSGV+P F  WVS+   GN  LIN +  DT S 
Sbjct: 496 NNRFSGKIPSFLVQLLSLTELNLSNNQLSGVIPPFRNWVSLGIKGNPNLINESTFDTPSF 555

Query: 477 EKR---RKSVVVPIVIALAAAILAVGVVSIFVLSISRRFYRVKDEHLQLGEDISSPQVIQ 533
           EK+   RK +VV I++ + A  ++  +V  F++ + RR ++      Q+ ED     VIQ
Sbjct: 556 EKKVKPRKPIVVSIIVVVVAFFISSALV-FFIIFMWRRNWKGNTNESQV-EDAPMTTVIQ 613

Query: 534 GNLLTGNGIHRSNIDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKI 593
           G LL+ + IHRSNIDF +AM+AV+ P N+ +KTRFS YYK VMP    YF+KKL WSDKI
Sbjct: 614 GKLLSLSVIHRSNIDFAEAMKAVSEPSNISVKTRFSAYYKVVMPCESIYFVKKLKWSDKI 673

Query: 594 FQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENA 653
            Q  SH KF K+LEVLG+LSNSN+MTPLAY L ++SAYLF+EYAPKGTLFDVLHGC  N 
Sbjct: 674 CQPESHDKFGKQLEVLGRLSNSNIMTPLAYALTTESAYLFFEYAPKGTLFDVLHGCPGNI 733

Query: 654 LDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713
           LDW++RYSIA+G AQGL FLHG  S P+LLLDLS+++IFLKSLKEPQIGDIELCKVIDP 
Sbjct: 734 LDWSARYSIAIGAAQGLTFLHGCASGPVLLLDLSSKSIFLKSLKEPQIGDIELCKVIDPL 793

Query: 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVL 773
           KSTGS+S VAGSVGYIPPEYAYTMRV+ AGNVYSFGV+LLELL+GKTAV++G ELAK VL
Sbjct: 794 KSTGSVSMVAGSVGYIPPEYAYTMRVSSAGNVYSFGVVLLELLSGKTAVSEGAELAKTVL 853

Query: 774 R-NSAQQDKLD-HILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN 831
             +S Q  K +  ILD ++S+TS  V+SQM  VLKVAV+CVS SPE RPKMK+VLRMLLN
Sbjct: 854 SYHSKQHQKWELQILDNSISKTSSYVQSQMGAVLKVAVSCVSPSPEDRPKMKTVLRMLLN 913

Query: 832 AR 833
           AR
Sbjct: 914 AR 915

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561353|ref|XP_003548947.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930-like [Glycine max]

 Score =  901 bits (2329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/841 (59%), Positives = 595/841 (70%), Gaps = 31/841 (3%)

Query: 1   MQSCGGIDGLKLLNFSKNELV-SLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSL 59
           +  CG I GLK LNFS N L   LP+F+GF  LE LD S NNL G+I +Q D LVSLKSL
Sbjct: 78  ITECGKIKGLKKLNFSGNMLGGDLPSFHGFDALESLDMSFNNLEGSIGIQLDGLVSLKSL 137

Query: 60  NLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVP 119
           NL+ N F G +P  LG +  LE LVLS N F G+IP  +  Y NLT +D  AN LSGS+P
Sbjct: 138 NLTSNNFGGSIPTKLGNSTVLEHLVLSVNQFGGKIPDELLSYENLTEVDFRANLLSGSIP 197

Query: 120 DRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDL 179
             IG+LS LE L+LS+NNL G +P SL ++T LSRF ANQN F G VP GIT  L +LDL
Sbjct: 198 SNIGKLSNLESLVLSSNNLTGEIPASLFNLTKLSRFEANQNNFIGPVPPGITNHLTSLDL 257

Query: 180 SYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATF 239
           S+N L G IP DLLS   LQ +DLS NML GS+P N SPNL RLR G+N L G IP   F
Sbjct: 258 SFNNLSGPIPEDLLSPSQLQAVDLSNNMLNGSVPTNFSPNLFRLRFGSNHLSGNIPPGAF 317

Query: 240 TSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQ 299
            ++  LTYLELDNN  TG IP +L SCR L LLNLAQN L G LP  LG+L  LQV+ LQ
Sbjct: 318 AAVPNLTYLELDNNDLTGTIPAELESCRKLALLNLAQNHLTGVLPPLLGNLTNLQVLKLQ 377

Query: 300 LNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSI 359
           +NKL+G IP +  QL  LS +N+SWNSL GSIPS ++NL++L  LNL+ NNL+GSIP SI
Sbjct: 378 MNKLNGAIPIEIGQLHKLSILNLSWNSLGGSIPSEITNLSSLNFLNLQSNNLSGSIPTSI 437

Query: 360 TNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNN 419
            N++ LIELQLG NQLSG IP MP  LQ +LNLSSN   G IP++F  L  LEVLDLSNN
Sbjct: 438 ENLKFLIELQLGENQLSGVIPSMPWNLQASLNLSSNHLSGNIPSSFGTLGSLEVLDLSNN 497

Query: 420 RFSGEIPQLLAQMPTLTQ-LLLTNNQLSGVVPKFSKWVSVDTTGNLKLINVTAPD----- 473
           + SG IP+ L  M +LTQ LL  N  LSG +PKFS+ V V  +G   LIN T+PD     
Sbjct: 498 KLSGPIPKELTGMSSLTQLLLANNALLSGEIPKFSQHVEVVYSGT-GLINNTSPDNPIAN 556

Query: 474 --TSPEKRRKSVVVPIVIALAAAILAVGVVSIFVLSISRRFYRVKDEHLQLGEDISSPQV 531
              +  K+  SV V I+IA+ AA    G+V    L +SR+             +   PQ 
Sbjct: 557 RPNTVSKKGISVHVTILIAIVAASFVFGIV--IQLVVSRK-------------NCWQPQF 601

Query: 532 IQGNLLTGNGIHRSNIDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSD 591
           IQ NLLT N IH+S I F KAMEAVA+  NV LKTRFSTYY A+MPSG  YFIKKL+ S+
Sbjct: 602 IQSNLLTPNAIHKSRIHFGKAMEAVADTSNVTLKTRFSTYYTAIMPSGSIYFIKKLDCSN 661

Query: 592 KIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLE 651
           KI  LGSH KF KELEV  KL+NSNVMTPLAYVL+ D+AY+ YEY   G+L+DVLHG + 
Sbjct: 662 KILPLGSHDKFGKELEVFAKLNNSNVMTPLAYVLSIDTAYILYEYISNGSLYDVLHGSM- 720

Query: 652 NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
             LDW SRYSIAVGVAQGL+FLHGF S+PILLLDLS+++I LKSLKEPQ+GD+EL  VI+
Sbjct: 721 --LDWGSRYSIAVGVAQGLSFLHGFASSPILLLDLSSKSIMLKSLKEPQVGDVELYHVIN 778

Query: 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKW 771
           P KSTG+ S V GSVGYIPPEYAYTM VT+AGNVYSFGVILLELLTG+  V  G EL KW
Sbjct: 779 PLKSTGNFSEVVGSVGYIPPEYAYTMTVTIAGNVYSFGVILLELLTGEPPVTDGKELVKW 838

Query: 772 VLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN 831
           VL +S       +ILDFNVSR+S  VRSQML +LK+A+ CVS SP+ARP M +VL+MLLN
Sbjct: 839 VLDHSTNP---QYILDFNVSRSSQEVRSQMLAILKIALVCVSTSPKARPNMNTVLQMLLN 895

Query: 832 A 832
            
Sbjct: 896 V 896

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242085018|ref|XP_002442934.1| hypothetical protein SORBIDRAFT_08g005060 [Sorghum bicolor] gi|241943627|gb|EES16772.1| hypothetical protein SORBIDRAFT_08g005060 [Sorghum bicolor]

 Score =  863 bits (2230), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/835 (55%), Positives = 601/835 (71%), Gaps = 11/835 (1%)

Query: 3   SCGGIDGLKLLNFSKNELV-SLPTFNGFAGLEVLDFSSNNL-NGNINLQFDELVSLKSLN 60
           +C   +GL+ LN S N+L  SL   +GF  LEVLD S N+  + N++ +F     L+S N
Sbjct: 138 TCSMKEGLQSLNLSTNQLANSLSDLSGFPQLEVLDLSFNSFASTNLSAEFGSFPKLRSFN 197

Query: 61  LSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPD 120
            S NK NG +P ++    +L ELVLS N   G IP G+  Y NLTL+DLS N ++G+VPD
Sbjct: 198 ASANKLNGDVPTSM--VSSLVELVLSRNRLSGSIPPGLFKYENLTLLDLSQNYITGTVPD 255

Query: 121 RIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLS 180
               L KLE L+LS+NNL G +P SL+++TTL+RFAANQN  +GS+  G+T++++ LDLS
Sbjct: 256 NFTSLPKLETLLLSSNNLSGEIPASLSNVTTLTRFAANQNSLNGSISPGVTKYVKMLDLS 315

Query: 181 YNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFT 240
           YN++ G IP DL    NL+TIDL+ N LEG +    S +LVRLRLGTN L G IP  + +
Sbjct: 316 YNEISGRIPPDLFLGMNLETIDLTSNNLEGHVDAKFSRSLVRLRLGTNNLSGGIPD-SIS 374

Query: 241 SLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQL 300
           +  KL YLELDNN+  G I   LG C++L LLNLA N L G +P ++G+L  L V+ LQ+
Sbjct: 375 NASKLAYLELDNNNLEGNIHPNLGECKNLALLNLASNMLQGQVPDEIGNLKNLVVLKLQM 434

Query: 301 NKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSIT 360
           N  SG IPS FS    L+ +N+S+NS SGSIP  ++NL NL ++NL+ N ++G IP SI+
Sbjct: 435 NNFSGSIPSTFSNFISLNALNLSYNSFSGSIPVEITNLQNLSSMNLQANKISGVIPISIS 494

Query: 361 NMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNR 420
            +++LIEL LG N L+G+IP MP  L   LNLS NL  G IP+    L  LE+LDLS N 
Sbjct: 495 LLKNLIELNLGNNLLTGSIPEMPASLSTTLNLSHNLLSGNIPSNIGYLGELEILDLSYNN 554

Query: 421 FSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVSVDTTGNLKLINVTA-PDTSPEKR 479
            SG++P  +  + +LT+L+L  NQLSG +P   K  +V+ TGN  L N T+  DT  +K+
Sbjct: 555 LSGQVPTSIGSLNSLTELILAYNQLSGSLPVLPKQAAVNITGNPGLTNTTSNVDTGSKKK 614

Query: 480 RKSVVVPIVIALAAAILAVGVVSIFV-LSISRRFYRVKDEHLQLGEDISSPQVIQGNLLT 538
           R ++++ I+IALA A++ + ++++ V LS+S++ YR++DE     E ++  Q+  G L+T
Sbjct: 615 RHTLLI-IIIALAGALIGLCLLAVIVTLSLSKKVYRIEDEQSPSEEGVA--QITSGRLVT 671

Query: 539 GNGIHRSNIDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGS 598
            N IH S IDF KAMEAV+N  N+ LKTRF TYYKAVMP+G +Y++KKLNWSDKIFQ+GS
Sbjct: 672 MNSIHASAIDFMKAMEAVSNYSNIFLKTRFCTYYKAVMPNGSTYYVKKLNWSDKIFQIGS 731

Query: 599 HHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWAS 658
             KF  E+EVLGKLSNSNVM PLAYVL  D+AYL YE+  KGT+FD LHG   + LDW S
Sbjct: 732 QEKFGHEIEVLGKLSNSNVMVPLAYVLTEDNAYLLYEHVHKGTVFDFLHGAKSDILDWPS 791

Query: 659 RYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS 718
           RYSIA+GVAQGL FLHG T  P+LLLDLSTR I LK++ EPQIGDIEL K+IDPSKSTGS
Sbjct: 792 RYSIALGVAQGLTFLHGCTQ-PVLLLDLSTRTIHLKTVNEPQIGDIELYKIIDPSKSTGS 850

Query: 719 LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQ 778
           LST+AG+VGYIPPEYAYTMR+TMAGNVYSFGVILLELLTGK +V+ G ELAKW L  S +
Sbjct: 851 LSTIAGTVGYIPPEYAYTMRLTMAGNVYSFGVILLELLTGKPSVSDGTELAKWALSLSGR 910

Query: 779 QDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR 833
            D+ + ILD  VS TS+AV SQML+VL +A++CV +SP+ARPKM++VLRML NA+
Sbjct: 911 PDQREQILDTRVSGTSIAVHSQMLSVLNIALSCVVLSPDARPKMRNVLRMLFNAK 965

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846442|ref|XP_002891102.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297336944|gb|EFH67361.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  858 bits (2217), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/836 (57%), Positives = 611/836 (73%), Gaps = 12/836 (1%)

Query: 4   CGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNI-NLQFDELVSLKSLNLS 62
           C  + GLK LNFS N+  S P F GF+ L VLDFS N L+GNI +  FD LV L+SLNLS
Sbjct: 123 CEKLIGLKHLNFSTNKFSSSPGFRGFSKLAVLDFSHNVLSGNIGDYGFDGLVQLRSLNLS 182

Query: 63  KNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRI 122
            N   G +P++L  TK LE+L +S N   G IP+GI DY+ L LIDLS N LSGS+P  +
Sbjct: 183 FNSLTGSVPVHL--TKGLEKLEVSDNGLSGTIPEGIDDYQELKLIDLSDNQLSGSIPSSL 240

Query: 123 GELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYN 182
           G LSKLE L+LS N L G +P SL+SI TL RFAAN+N+F+G +P GIT+ L NLDLS+N
Sbjct: 241 GNLSKLESLLLSNNYLSGLIPESLSSIQTLRRFAANRNQFTGRIPSGITKHLENLDLSFN 300

Query: 183 KLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSL 242
           KL   IP DLLS   L ++DLS N L G +PQ++SP+LVRLRLG+N L G++PS  F SL
Sbjct: 301 KLAESIPDDLLSQLKLVSVDLSFNHLVGWIPQSISPSLVRLRLGSNKLTGKVPSTAFESL 360

Query: 243 EKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNK 302
           + LTYLE+DNNS TG IP   G+   L LLNLA NE  G+LP   G+L  LQV+ LQ NK
Sbjct: 361 QNLTYLEMDNNSLTGNIPPSFGNLVILNLLNLAMNEFTGNLPPAFGNLTRLQVIKLQENK 420

Query: 303 LSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNM 362
           L+GEIP   + L  L  +NISWNSLSGSIP  LSNLT L ++NL+ NNL+G+IP++I N+
Sbjct: 421 LTGEIPDTITFLSNLLILNISWNSLSGSIPPSLSNLTRLSSMNLQGNNLSGTIPDNIRNL 480

Query: 363 RSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFS 422
             LIELQLG NQL G IP+MP +LQI+LNLS NLFEG IPTT + L+ LEVLDLSNN+FS
Sbjct: 481 EDLIELQLGQNQLRGRIPVMPRKLQISLNLSYNLFEGSIPTTLSELDRLEVLDLSNNKFS 540

Query: 423 GEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVSVDTTGN--LKLINVTAPDTSPEKRR 480
           GEIP LL  + +LTQL+L+NNQL+G +PKF+K V ++ +GN  +KL N            
Sbjct: 541 GEIPDLLRSLLSLTQLILSNNQLTGNIPKFTKNVLLNVSGNPGIKLNNDDKFSIPKSSSG 600

Query: 481 KSVVVPIVIALAAAILAV--GVVSIFVLSISRRFYRVKDEHLQLGEDISS--PQVIQGNL 536
           KS +V ++I +A+ I A+  G++++ +L +SRRF  + +   +  E+ S+  P+VI G L
Sbjct: 601 KSKLVFVIIFVASGICAIVAGIITVILLKLSRRFKGINNIEAEQNEEGSTVLPEVIHGKL 660

Query: 537 LTGNGIHRSNIDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQL 596
           LT N +HRSNI+FTKA+EAVA+P +   +T F +YY+ VMPSG SYFIKKLN  D+IFQ 
Sbjct: 661 LTSNALHRSNINFTKAVEAVAHPESALYQTMFWSYYRVVMPSGSSYFIKKLNTRDRIFQQ 720

Query: 597 GSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDW 656
            S  + + ELE+LGKL ++N+M PLAYVL S+   L Y++A   TL+DVLH    + +DW
Sbjct: 721 ASSEQLELELEMLGKLHHANIMVPLAYVLYSEGCLLVYDFAHTCTLYDVLHNPTSDVVDW 780

Query: 657 ASRYSIAVGVAQGLAFLHGFTSN---PILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713
            SRYSIAVG+AQG+++LHG  SN   PILL DLS++ I LKSL EP +GDIEL KVIDPS
Sbjct: 781 TSRYSIAVGIAQGISYLHGSISNGRDPILLPDLSSKKIILKSLTEPLVGDIELFKVIDPS 840

Query: 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVL 773
           +S  SLS VAG++GYIPPEYAYTMRVTMAGNVYSFGVILLELLTG+ AV++G +LAKWV 
Sbjct: 841 RSNSSLSAVAGTIGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGRPAVSEGRDLAKWVQ 900

Query: 774 RNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
            +S+ Q++ ++ILD  VS+TS     QML  L VA+AC+++SP ARPKMK+VLRML
Sbjct: 901 SHSSHQEQQNNILDLRVSKTSTVATKQMLRALSVALACINISPGARPKMKTVLRML 956

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	833
TAIR|locus:2009288	966	AT1G34420 [Arabidopsis thalian	0.990	0.854	0.519	2.7e-210
TAIR|locus:2054421	890	AT2G41820 [Arabidopsis thalian	0.355	0.332	0.443	5.6e-115
TAIR|locus:2139885	1013	AT4G28650 [Arabidopsis thalian	0.977	0.803	0.329	3.9e-99
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.501	0.379	0.335	4.3e-99
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.471	0.349	0.336	7.9e-97
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.561	0.410	0.320	9.7e-96
TAIR|locus:2025545	1029	AT1G08590 [Arabidopsis thalian	0.563	0.455	0.331	1.9e-95
TAIR|locus:2154344	1135	AT5G48940 [Arabidopsis thalian	0.506	0.371	0.359	1.2e-94
TAIR|locus:2020417	1101	AT1G17230 [Arabidopsis thalian	0.955	0.722	0.323	6.1e-94
UNIPROTKB|P93194	1109	INRPK1 "Receptor-like protein	0.564	0.423	0.342	4.3e-91

TAIR|locus:2009288 AT1G34420 [Arabidopsis thaliana (taxid:3702)]

 Score = 2033 (720.7 bits), Expect = 2.7e-210, P = 2.7e-210
 Identities = 435/837 (51%), Positives = 554/837 (66%)

Query:     3 SCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNI-NLQFDELVXXXXXXX 61
             +C  +  LK LNFS N+  + P F GF+ L VLDFS N L+GN+ +  FD LV       
Sbjct:   129 NCERLIALKHLNFSTNKFSTSPGFRGFSKLAVLDFSHNVLSGNVGDYGFDGLVQLRSLNL 188

Query:    62 XXXXXXGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDR 121
                   G +P++L  TK+LE+L +S N+  G IP+GI DY+ LTLIDLS N L+GS+P  
Sbjct:   189 SFNRLTGSVPVHL--TKSLEKLEVSDNSLSGTIPEGIKDYQELTLIDLSDNQLNGSIPSS 246

Query:   122 IGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSY 181
             +G LSKLE L+LS N L G +P SL+SI TL RFAAN+N+F+G +P G+T+ L NLDLS+
Sbjct:   247 LGNLSKLESLLLSNNYLSGLIPESLSSIQTLRRFAANRNRFTGEIPSGLTKHLENLDLSF 306

Query:   182 NKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTS 241
             N L G IP DLLS   L ++DLS N L G +PQ++S +LVRLRLG+N L G +PS  F S
Sbjct:   307 NSLAGSIPGDLLSQLKLVSVDLSSNQLVGWIPQSISSSLVRLRLGSNKLTGSVPSVAFES 366

Query:   242 LEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLN 301
             L+ LTYLE+DNNS TG IP   G+  SL LLNLA NE  G LP   G+L  LQV+ LQ N
Sbjct:   367 LQLLTYLEMDNNSLTGFIPPSFGNLVSLNLLNLAMNEFTGILPPAFGNLSRLQVIKLQQN 426

Query:   302 KLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFXXXXXXXXXXXXXXXXXXGSIPNSITN 361
             KL+GEIP   + L  L  +NIS NSLSGSIP                    G+IP++I N
Sbjct:   427 KLTGEIPDTIAFLSNLLILNISCNSLSGSIPPSLSQLKRLSNMNLQGNNLNGTIPDNIQN 486

Query:   362 MRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRF 421
             +  LIELQLG NQL G IP+MP +LQI+LNLS NLFEG IPTT + L+ LEVLDLSNN F
Sbjct:   487 LEDLIELQLGQNQLRGRIPVMPRKLQISLNLSYNLFEGSIPTTLSELDRLEVLDLSNNNF 546

Query:   422 SGEIXXXXXXXXXXXXXXXXXXXXSGVVPKFSKWVSVDTTGN----LKLINVTAPDTSPE 477
             SGEI                    +G +P+F+  VSVD  GN    LK  N  +   +P 
Sbjct:   547 SGEIPNFLSRLMSLTQLILSNNQLTGNIPRFTHNVSVDVRGNPGVKLKTENEVSIQRNPS 606

Query:   478 KRRKSXXXXXXXXXXXXXXXXXXXSIFVLSISRRFYRVKDEHLQLGEDISS--PQVIQGN 535
              + K                    ++ VL  SRR   + +  +   E+ S+  P+VI G 
Sbjct:   607 GKSKLVMIVIFVSLGVLALLTGIITVTVLKFSRRCKGINNMQVDPDEEGSTVLPEVIHGK 666

Query:   536 LLTGNGIHRSNIDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQ 595
             LLT N +HRSNI+F KA+EAVA+P +   +T F +YY+ VMPSG SYFIKKLN  D++FQ
Sbjct:   667 LLTSNALHRSNINFAKAVEAVAHPEHGLHQTMFWSYYRVVMPSGSSYFIKKLNTRDRVFQ 726

Query:   596 LGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALD 655
               S  + + ELE+LGKL ++NVM PLAYVL S+   L Y+++   TL+++LH      +D
Sbjct:   727 QASSEQLEVELEMLGKLHHTNVMVPLAYVLYSEGCLLIYDFSHTCTLYEILHNHSSGVVD 786

Query:   656 WASRYSIAVGVAQGLAFLHGFTSN---PILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP 712
             W SRYSIAVG+AQG+++LHG  S+   PILL DLS++ I LKSL EP +GDIEL KVIDP
Sbjct:   787 WTSRYSIAVGIAQGISYLHGSESSGRDPILLPDLSSKKILLKSLTEPLVGDIELFKVIDP 846

Query:   713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWV 772
             SKS  SLS VAG++GYIPPEYAYTMRVTMAGNVYSFGVILLELLTG+ AV++G +LAKWV
Sbjct:   847 SKSNSSLSAVAGTIGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGRPAVSEGRDLAKWV 906

Query:   773 LRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
               +S+ Q++ ++ILD  VS+TS     QML  L VA+AC+++SP ARPKMK+VLRML
Sbjct:   907 QSHSSHQEQQNNILDLRVSKTSTVATKQMLRALGVALACINISPGARPKMKTVLRML 963

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2054421 AT2G41820 [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 5.6e-115, Sum P(2) = 5.6e-115
 Identities = 140/316 (44%), Positives = 192/316 (60%)

Query:   524 EDISSPQVIQGNLLTGNGIHRSNIDFTKAMEAVANPLNVELKT-RFSTYYKAVMPSGMSY 582
             ED   P +I GN+   N   +  ID    ++A     N +L T  FS+ YKAVMPSGM  
Sbjct:   578 ED-EQPAIIAGNVFLEN--LKQGIDLDAVVKATMKESN-KLSTGTFSSVYKAVMPSGMIV 633

Query:   583 FIKKLNWSDKIFQLGSHH--KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKG 640
              +KKL   D+     SHH  K  +ELE L KL + +++ P+ +V+  D A L +++ P G
Sbjct:   634 SVKKLKSMDRAI---SHHQNKMIRELERLSKLCHDHLVRPIGFVIYEDVALLLHQHLPNG 690

Query:   641 TLFDVLHGCL---ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK 697
              L  ++H      E   DW  R SIAVG A+GLAFLH      I+ LD+S+ N+ L S  
Sbjct:   691 NLTQLIHESTKKPEYQPDWPMRLSIAVGAAEGLAFLHQVA---IIHLDVSSSNVLLDSGY 747

Query:   698 EPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
             +  +G+IE+ K++DPS+ T S+S+VAGS GYIPPEYAYTM+VT  GNVYS+GV+LLE+LT
Sbjct:   748 KAVLGEIEISKLLDPSRGTASISSVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILT 807

Query:   758 GKTAVNQ----GNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVS 813
              +  V +    G +L KWV   SA+ +  + ILD  +S  S A R +ML  LKVA+ C  
Sbjct:   808 SRAPVEEEFGEGVDLVKWVHGASARGETPEQILDAKLSTVSFAWRREMLAALKVALLCTD 867

Query:   814 VSPEARPKMKSVLRML 829
             ++P  RPKMK V+ ML
Sbjct:   868 ITPAKRPKMKKVVEML 883

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2139885 AT4G28650 [Arabidopsis thaliana (taxid:3702)]

 Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
 Identities = 280/851 (32%), Positives = 403/851 (47%)

Query:     9 GLKLLNFSKNELVSLPT--FNGFAGLEVLDFSSNNLNGNINLQFDELVXXXXXXXXXXXX 66
             GL  LN S N L    T        LEVLD   N   G++   F  L             
Sbjct:   141 GLVHLNASGNNLSGNLTEDLGNLVSLEVLDLRGNFFQGSLPSSFKNLQKLRFLGLSGNNL 200

Query:    67 XGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELS 126
              G LP  LG+  +LE  +L  N F G IP    +  +L  +DL+   LSG +P  +G+L 
Sbjct:   201 TGELPSVLGQLPSLETAILGYNEFKGPIPPEFGNINSLKYLDLAIGKLSGEIPSELGKLK 260

Query:   127 KLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRF--LRNLDLSYNKL 184
              LE L+L  NN  G +P  + SITTL     + N  +G +P  IT+   L+ L+L  NKL
Sbjct:   261 SLETLLLYENNFTGTIPREIGSITTLKVLDFSDNALTGEIPMEITKLKNLQLLNLMRNKL 320

Query:   185 LGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPN--LVRLRLGTNLLIGEIPSATFTSL 242
              G IP  + S   LQ ++L  N L G LP ++  N  L  L + +N   GEIPS T  + 
Sbjct:   321 SGSIPPAISSLAQLQVLELWNNTLSGELPSDLGKNSPLQWLDVSSNSFSGEIPS-TLCNK 379

Query:   243 EKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNK 302
               LT L L NN+FTG IP  L +C+SL  + +  N LNGS+PI  G L  LQ + L  N+
Sbjct:   380 GNLTKLILFNNTFTGQIPATLSTCQSLVRVRMQNNLLNGSIPIGFGKLEKLQRLELAGNR 439

Query:   303 LSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFXXXXXXXXXXXXXXXXXXGSIPNSITNM 362
             LSG IP   S    LS ++ S N +  S+PS                   G +P+   + 
Sbjct:   440 LSGGIPGDISDSVSLSFIDFSRNQIRSSLPSTILSIHNLQAFLVADNFISGEVPDQFQDC 499

Query:   363 RSLIELQLGGNQLSGTIPMMPPRLQ--IALNLSSNLFEGPIPTTFARLNGLEVLDLSNNR 420
              SL  L L  N L+GTIP      +  ++LNL +N   G IP     ++ L VLDLSNN 
Sbjct:   500 PSLSNLDLSSNTLTGTIPSSIASCEKLVSLNLRNNNLTGEIPRQITTMSALAVLDLSNNS 559

Query:   421 FSGEIXXXXXXXXXXXXXXXXXXXXSGVVP--KFSKWVSVDTT-GNLKLINVTAPDTSPE 477
              +G +                    +G VP   F K ++ D   GN  L     P  S  
Sbjct:   560 LTGVLPESIGTSPALELLNVSYNKLTGPVPINGFLKTINPDDLRGNSGLCGGVLPPCSKF 619

Query:   478 KRRKSXXXXXXXXXXXXXXXXXXXSIFVLSI----SRRFYRVKDEHLQLGEDISSPQVIQ 533
             +R  S                   S+  L I    +R  Y+    +   G++ +S     
Sbjct:   620 QRATSSHSSLHGKRIVAGWLIGIASVLALGILTIVTRTLYKKWYSNGFCGDETASKGEWP 679

Query:   534 GNLLTGNGIHRSNIDFTKA-MEAVANPLNVELKTRFSTYYKAVMPSGMSYF-IKKLNWSD 591
               L+     HR  + FT + + A     N+         YKA M    +   +KKL  S 
Sbjct:   680 WRLMA---FHR--LGFTASDILACIKESNMIGMGATGIVYKAEMSRSSTVLAVKKLWRSA 734

Query:   592 KIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLE 651
                + G+   F  E+ +LGKL + N++  L ++    +  + YE+   G L D +HG  +
Sbjct:   735 ADIEDGTTGDFVGEVNLLGKLRHRNIVRLLGFLYNDKNMMIVYEFMLNGNLGDAIHG--K 792

Query:   652 NA-----LDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIEL 706
             NA     +DW SRY+IA+GVA GLA+LH     P++  D+ + NI L +  + +I D  L
Sbjct:   793 NAAGRLLVDWVSRYNIALGVAHGLAYLHHDCHPPVIHRDIKSNNILLDANLDARIADFGL 852

Query:   707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVN--- 763
              +++   K T  +S VAGS GYI PEY YT++V    ++YS+GV+LLELLTG+  +    
Sbjct:   853 ARMMARKKET--VSMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELLTGRRPLEPEF 910

Query:   764 -QGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKM 822
              +  ++ +WV R       L+  LD NV      V+ +ML VL++A+ C +  P+ RP M
Sbjct:   911 GESVDIVEWVRRKIRDNISLEEALDPNVGNCRY-VQEEMLLVLQIALLCTTKLPKDRPSM 969

Query:   823 KSVLRMLLNAR 833
             + V+ ML  A+
Sbjct:   970 RDVISMLGEAK 980

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010067 "procambium histogenesis" evidence=ISS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 550 (198.7 bits), Expect = 4.3e-99, Sum P(2) = 4.3e-99
 Identities = 143/426 (33%), Positives = 204/426 (47%)

Query:    32 LEVLDFSSNNLNGNINLQFDELVXXXXXXXXXXXXXGFLPINLGKTKALEELVLSGNAFH 91
             LE L    N L G I  +  +L              G +P  +G      E+  S NA  
Sbjct:   267 LETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALT 326

Query:    92 GEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITT 151
             GEIP  + +   L L+ L  N L+G++P  +  L  L  L LS N L G +P     +  
Sbjct:   327 GEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRG 386

Query:   152 LSRFAANQNKFSGSVPGGITRF--LRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLE 209
             L      QN  SG++P  +  +  L  LD+S N L G IP  L  H N+  ++L  N L 
Sbjct:   387 LFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLS 446

Query:   210 GSLPQNMSP--NLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCR 267
             G++P  ++    LV+LRL  N L+G  PS     +  +T +EL  N F G IP+++G+C 
Sbjct:   447 GNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVN-VTAIELGQNRFRGSIPREVGNCS 505

Query:   268 SLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSL 327
             +L  L LA N   G LP ++G L  L  +N+  NKL+GE+PS+    K+L  +++  N+ 
Sbjct:   506 ALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNF 565

Query:   328 SGSIPSFXXXXXXXXXXXXXXXXXXGSIPNSITNMRSLIELQLGGNQLSGTIPM---MPP 384
             SG++PS                   G+IP ++ N+  L ELQ+GGN  +G+IP       
Sbjct:   566 SGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLT 625

Query:   385 RLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIXXXXXXXXXXXXXXXXXXX 444
              LQIALNLS N   G IP   + L  LE L L+NN  SGEI                   
Sbjct:   626 GLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNS 685

Query:   445 XSGVVP 450
              +G +P
Sbjct:   686 LTGPIP 691

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 7.9e-97, Sum P(2) = 7.9e-97
 Identities = 135/401 (33%), Positives = 206/401 (51%)

Query:    32 LEVLDFSSNNLNGNINLQFDELVXXXXXXXXXXXXXGFLPINLGKTKALEELVLSGNAFH 91
             LE L    N+L G I  +   +              G +P  LGK   + E+  S N   
Sbjct:   279 LETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLS 338

Query:    92 GEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITT 151
             GEIP  ++    L L+ L  N L+G +P+ + +L  L  L LS N+L G +P    ++T+
Sbjct:   339 GEIPVELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTS 398

Query:   152 LSRFAANQNKFSGSVPGGITRF--LRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLE 209
             + +     N  SG +P G+  +  L  +D S N+L G IP  +    NL  ++L  N + 
Sbjct:   399 MRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIF 458

Query:   210 GSLPQNM--SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCR 267
             G++P  +    +L++LR+  N L G+ P+     L  L+ +ELD N F+G +P ++G+C+
Sbjct:   459 GNIPPGVLRCKSLLQLRVVGNRLTGQFPTE-LCKLVNLSAIELDQNRFSGPLPPEIGTCQ 517

Query:   268 SLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSL 327
              L  L+LA N+ + +LP ++  L  L   N+  N L+G IPS+ +  K+L  +++S NS 
Sbjct:   518 KLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSF 577

Query:   328 SGSIPSFXXXXXXXXXXXXXXXXXXGSIPNSITNMRSLIELQLGGNQLSGTIPM---MPP 384
              GS+P                    G+IP +I N+  L ELQ+GGN  SG+IP    +  
Sbjct:   578 IGSLPPELGSLHQLEILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFSGSIPPQLGLLS 637

Query:   385 RLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEI 425
              LQIA+NLS N F G IP     L+ L  L L+NN  SGEI
Sbjct:   638 SLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEI 678

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 579 (208.9 bits), Expect = 9.7e-96, Sum P(2) = 9.7e-96
 Identities = 156/487 (32%), Positives = 241/487 (49%)

Query:     2 QSCGGIDGLKLLNFSKNELVS-LP-TFNGFAGLEVLDFSSNNLNGNINLQFDELVXXXXX 59
             +S G   GLK+L+ S N LV  +P + +    LE L  +SN L G I     +       
Sbjct:   123 ESLGDCLGLKVLDLSSNGLVGDIPWSLSKLRNLETLILNSNQLTGKIPPDISKCSKLKSL 182

Query:    60 XXXXXXXXGFLPINLGKTKALEELVLSGNA-FHGEIPKGIADYRNLTLIDLSANNLSGSV 118
                     G +P  LGK   LE + + GN    G+IP  I D  NLT++ L+  ++SG++
Sbjct:   183 ILFDNLLTGSIPTELGKLSGLEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAETSVSGNL 242

Query:   119 PDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVP---GGITRFLR 175
             P  +G+L KLE L +    + G +P+ L + + L      +N  SGS+P   G +T+ L 
Sbjct:   243 PSSLGKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQLTK-LE 301

Query:   176 NLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGE 233
              L L  N L+G IP ++ +  NL+ IDLS+N+L GS+P ++     L    +  N   G 
Sbjct:   302 QLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGS 361

Query:   234 IPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGIL 293
             IP+ T ++   L  L+LD N  +G+IP +LG+   LTL     N+L GS+P  L     L
Sbjct:   362 IPT-TISNCSSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDL 420

Query:   294 QVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFXXXXXXXXXXXXXXXXXXG 353
             Q ++L  N L+G IPS    L+ L+ + +  NSLSG IP                    G
Sbjct:   421 QALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITG 480

Query:   354 SIPNSITNMRSLIELQLGGNQLSGTIPM---MPPRLQIALNLSSNLFEGPIPTTFARLNG 410
              IP+ I +++ +  L    N+L G +P        LQ+ ++LS+N  EG +P   + L+G
Sbjct:   481 EIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQM-IDLSNNSLEGSLPNPVSSLSG 539

Query:   411 LEVLDLSNNRFSGEIXXXXXXXXXXXXXXXXXXXXSGVVPKFSKWVSVDTTGNLKLINVT 470
             L+VLD+S N+FSG+I                    SG +P      S+     L+L+++ 
Sbjct:   540 LQVLDVSANQFSGKIPASLGRLVSLNKLILSKNLFSGSIP-----TSLGMCSGLQLLDLG 594

Query:   471 APDTSPE 477
             + + S E
Sbjct:   595 SNELSGE 601

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2025545 AT1G08590 [Arabidopsis thaliana (taxid:3702)]

 Score = 580 (209.2 bits), Expect = 1.9e-95, Sum P(2) = 1.9e-95
 Identities = 160/482 (33%), Positives = 230/482 (47%)

Query:     5 GGIDGLKLLNFSKNELVS-LPTFNGFAG-LEVLDFSSNNLNGNINLQFDELVXXXXXXXX 62
             G   GL  +N S N     LP   G A  LEVLDF      G++   F  L         
Sbjct:   146 GMATGLTHVNASSNNFSGFLPEDLGNATTLEVLDFRGGYFEGSVPSSFKNLKNLKFLGLS 205

Query:    63 XXXXXGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRI 122
                  G +P  +G+  +LE ++L  N F GEIP+       L  +DL+  NL+G +P  +
Sbjct:   206 GNNFGGKVPKVIGELSSLETIILGYNGFMGEIPEEFGKLTRLQYLDLAVGNLTGQIPSSL 265

Query:   123 GELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPG--GITRFLRNLDLS 180
             G+L +L  + L  N L G+LP  L  +T+L     + N+ +G +P   G  + L+ L+L 
Sbjct:   266 GQLKQLTTVYLYQNRLTGKLPRELGGMTSLVFLDLSDNQITGEIPMEVGELKNLQLLNLM 325

Query:   181 YNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPN--LVRLRLGTNLLIGEIPSAT 238
              N+L G+IP  +   PNL+ ++L  N L GSLP ++  N  L  L + +N L G+IPS  
Sbjct:   326 RNQLTGIIPSKIAELPNLEVLELWQNSLMGSLPVHLGKNSPLKWLDVSSNKLSGDIPSGL 385

Query:   239 FTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNL 298
               S   LT L L NNSF+G IP+++ SC +L  + + +N ++GS+P   G L +LQ + L
Sbjct:   386 CYS-RNLTKLILFNNSFSGQIPEEIFSCPTLVRVRIQKNHISGSIPAGSGDLPMLQHLEL 444

Query:   299 QLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFXXXXXXXXXXXXXXXXXXGSIPNS 358
               N L+G+IP   +    LS ++IS+N LS S+ S                   G IPN 
Sbjct:   445 AKNNLTGKIPDDIALSTSLSFIDISFNHLS-SLSSSIFSSPNLQTFIASHNNFAGKIPNQ 503

Query:   359 ITNMRSLIELQLGGNQLSGTIPMMPPRLQ--IALNLSSNLFEGPIPTTFARLNGLEVLDL 416
             I +  SL  L L  N  SG IP      +  ++LNL SN   G IP   A ++ L VLDL
Sbjct:   504 IQDRPSLSVLDLSFNHFSGGIPERIASFEKLVSLNLKSNQLVGEIPKALAGMHMLAVLDL 563

Query:   417 SNNRFSGEIXXXXXXXXXXXXXXXXXXXXSGVVPKFSKWVSVDT---TGNLKLINVTAPD 473
             SNN  +G I                     G +P    + ++D     GN  L     P 
Sbjct:   564 SNNSLTGNIPADLGASPTLEMLNVSFNKLDGPIPSNMLFAAIDPKDLVGNNGLCGGVLPP 623

Query:   474 TS 475
              S
Sbjct:   624 CS 625

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010067 "procambium histogenesis" evidence=ISS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2154344 AT5G48940 [Arabidopsis thaliana (taxid:3702)]

 Score = 598 (215.6 bits), Expect = 1.2e-94, Sum P(2) = 1.2e-94
 Identities = 156/434 (35%), Positives = 231/434 (53%)

Query:     2 QSCGGIDGLKLLNFSKNELV-SLPTFNG-FAGLEVLDFSSNNLNGNINLQFDELVXXXXX 59
             +  G    LK+L  +  ++  SLP   G  + L+ L   S  L+G I  +          
Sbjct:   221 EEIGNCRNLKVLGLAATKISGSLPVSLGQLSKLQSLSVYSTMLSGEIPKELGNCSELINL 280

Query:    60 XXXXXXXXGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVP 119
                     G LP  LGK + LE+++L  N  HG IP+ I   ++L  IDLS N  SG++P
Sbjct:   281 FLYDNDLSGTLPKELGKLQNLEKMLLWQNNLHGPIPEEIGFMKSLNAIDLSMNYFSGTIP 340

Query:   120 DRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPG--GITRFLRNL 177
                G LS L+ L+LS+NN+ G +P+ L++ T L +F  + N+ SG +P   G+ + L N+
Sbjct:   341 KSFGNLSNLQELMLSSNNITGSIPSILSNCTKLVQFQIDANQISGLIPPEIGLLKEL-NI 399

Query:   178 DLSY-NKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSP--NLVRLRLGTNLLIGEI 234
              L + NKL G IP +L    NLQ +DLS N L GSLP  +    NL +L L +N + G I
Sbjct:   400 FLGWQNKLEGNIPDELAGCQNLQALDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISGVI 459

Query:   235 PSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQ 294
             P     +   L  L L NN  TG IP+ +G  ++L+ L+L++N L+G +P+++ +   LQ
Sbjct:   460 P-LEIGNCTSLVRLRLVNNRITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQ 518

Query:   295 VMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFXXXXXXXXXXXXXXXXXXGS 354
             ++NL  N L G +P   S L  L  +++S N L+G IP                    G 
Sbjct:   519 MLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGE 578

Query:   355 IPNSITNMRSLIELQLGGNQLSGTIP--MMPPR-LQIALNLSSNLFEGPIPTTFARLNGL 411
             IP+S+ +  +L  L L  N +SGTIP  +   + L IALNLS N  +G IP   + LN L
Sbjct:   579 IPSSLGHCTNLQLLDLSSNNISGTIPEELFDIQDLDIALNLSWNSLDGFIPERISALNRL 638

Query:   412 EVLDLSNNRFSGEI 425
              VLD+S+N  SG++
Sbjct:   639 SVLDISHNMLSGDL 652

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2020417 AT1G17230 [Arabidopsis thaliana (taxid:3702)]

 Score = 935 (334.2 bits), Expect = 6.1e-94, P = 6.1e-94
 Identities = 271/838 (32%), Positives = 388/838 (46%)

Query:    24 PTFNGFAGLEVLDFSSNNLNGNINLQFDELVXXXXXXXXXXXXXGFLPINLGKTKALEEL 83
             P+    + LEVL    N   G+I  +  +L              G +P  +G      E+
Sbjct:   253 PSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEI 312

Query:    84 VLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLP 143
               S N   G IPK      NL L+ L  N L G +P  +GEL+ LE L LS N L+G +P
Sbjct:   313 DFSENQLTGFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIP 372

Query:   144 TSLASITTLSRFAANQNKFSGSVPGGITRFLRN---LDLSYNKLLGVIPIDLLSHPNLQT 200
               L  +  L       N+  G +P  +  F  N   LD+S N L G IP        L  
Sbjct:   373 QELQFLPYLVDLQLFDNQLEGKIPP-LIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLIL 431

Query:   201 IDLSVNMLEGSLPQNMSP--NLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGM 258
             + L  N L G++P+++    +L +L LG N L G +P   F +L+ LT LEL  N  +G 
Sbjct:   432 LSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELF-NLQNLTALELHQNWLSGN 490

Query:   259 IPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLS 318
             I   LG  ++L  L LA N   G +P ++G+L  +   N+  N+L+G IP +      + 
Sbjct:   491 ISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQ 550

Query:   319 TMNISWNSLSGSIPSFXXXXXXXXXXXXXXXXXXGSIPNSITNMRSLIELQLGGNQLSGT 378
              +++S N  SG I                     G IP+S  ++  L+ELQLGGN LS  
Sbjct:   551 RLDLSGNKFSGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSEN 610

Query:   379 IPMMPPRL---QIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIXXXXXXXXXX 435
             IP+   +L   QI+LN+S N   G IP +   L  LE+L L++N+ SGEI          
Sbjct:   611 IPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSL 670

Query:   436 XXXXXXXXXXSGVVPK---FSKWVSVDTTGNLKLINVTAPDTSP-----EKRRKSXXXXX 487
                        G VP    F +  S +  GN  L N       P     + +        
Sbjct:   671 LICNISNNNLVGTVPDTAVFQRMDSSNFAGNHGLCNSQRSHCQPLVPHSDSKLNWLINGS 730

Query:   488 XXXXXXXXXXXXXXSIFVLSISRRFYRVK--DEHLQLGEDISSPQVIQGNLLTGNGI-HR 544
                           S+F+++     + +K  +      ED + P V+        G  ++
Sbjct:   731 QRQKILTITCIVIGSVFLITFLGLCWTIKRREPAFVALEDQTKPDVMDSYYFPKKGFTYQ 790

Query:   545 SNIDFTKAMEAVANPLNVEL-KTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFD 603
               +D T+         +V L +    T YKA M  G    +KKLN   +     S + F 
Sbjct:   791 GLVDATRNFSE-----DVVLGRGACGTVYKAEMSGGEVIAVKKLNSRGE--GASSDNSFR 843

Query:   604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENAL-DWASRYSI 662
              E+  LGK+ + N++    +    +S  L YEY  KG+L + L    +N L DW +RY I
Sbjct:   844 AEISTLGKIRHRNIVKLYGFCYHQNSNLLLYEYMSKGSLGEQLQRGEKNCLLDWNARYRI 903

Query:   663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
             A+G A+GL +LH      I+  D+ + NI L    +  +GD  L K+ID S S  S+S V
Sbjct:   904 ALGAAEGLCYLHHDCRPQIVHRDIKSNNILLDERFQAHVGDFGLAKLIDLSYSK-SMSAV 962

Query:   723 AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVN---QGNELAKWV---LRNS 776
             AGS GYI PEYAYTM+VT   ++YSFGV+LLEL+TGK  V    QG +L  WV   +RN 
Sbjct:   963 AGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKPPVQPLEQGGDLVNWVRRSIRNM 1022

Query:   777 AQQ-DKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR 833
                 +  D  LD N  RT      +M  VLK+A+ C S SP +RP M+ V+ M+  AR
Sbjct:  1023 IPTIEMFDARLDTNDKRTV----HEMSLVLKIALFCTSNSPASRPTMREVVAMITEAR 1076

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

UNIPROTKB|P93194 INRPK1 "Receptor-like protein kinase" [Ipomoea nil (taxid:35883)]

 Score = 584 (210.6 bits), Expect = 4.3e-91, Sum P(2) = 4.3e-91
 Identities = 167/487 (34%), Positives = 230/487 (47%)

Query:     3 SCGGIDGLKLLNFSKNELVS-LPTFNG-FAGLEVLDFSSNNLNGNINLQFDELVXXXXXX 60
             SC  ID + L N   N+    LP   G    L      S  L+G I   F +L       
Sbjct:   258 SCKQIDTISLSN---NQFTGGLPPGLGNCTSLREFGAFSCALSGPIPSCFGQLTKLDTLY 314

Query:    61 XXXXXXXGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPD 120
                    G +P  LGK K++ +L L  N   GEIP  +     L  + L  NNLSG VP 
Sbjct:   315 LAGNHFSGRIPPELGKCKSMIDLQLQQNQLEGEIPGELGMLSQLQYLHLYTNNLSGEVPL 374

Query:   121 RIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPG--GITRFLRNLD 178
              I ++  L+ L L  NNL G LP  +  +  L   A  +N F+G +P   G    L  LD
Sbjct:   375 SIWKIQSLQSLQLYQNNLSGELPVDMTELKQLVSLALYENHFTGVIPQDLGANSSLEVLD 434

Query:   179 LSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEIPS 236
             L+ N   G IP +L S   L+ + L  N LEGS+P ++     L RL L  N L G +P 
Sbjct:   435 LTRNMFTGHIPPNLCSQKKLKRLLLGYNYLEGSVPSDLGGCSTLERLILEENNLRGGLPD 494

Query:   237 ATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVM 296
               F   + L + +L  N+FTG IP  LG+ +++T + L+ N+L+GS+P +LGSL  L+ +
Sbjct:   495 --FVEKQNLLFFDLSGNNFTGPIPPSLGNLKNVTAIYLSSNQLSGSIPPELGSLVKLEHL 552

Query:   297 NLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFXXXXXXXXXXXXXXXXXXGSIP 356
             NL  N L G +PS+ S    LS ++ S N L+GSIPS                   G IP
Sbjct:   553 NLSHNILKGILPSELSNCHKLSELDASHNLLNGSIPSTLGSLTELTKLSLGENSFSGGIP 612

Query:   357 NSITNMRSLIELQLGGNQLSGTIPMMPPRLQI-ALNLSSNLFEGPIPTTFARLNGLEVLD 415
              S+     L+ LQLGGN L+G IP +     + +LNLSSN   G +P    +L  LE LD
Sbjct:   613 TSLFQSNKLLNLQLGGNLLAGDIPPVGALQALRSLNLSSNKLNGQLPIDLGKLKMLEELD 672

Query:   416 LSNNRFSGEIXXXXXXXXXXXXXXXXXXXXSGVVPKFSKWVSVDTT---GNLKL-INVTA 471
             +S+N  SG +                      V P  +K+++   T   GN  L IN  A
Sbjct:   673 VSHNNLSGTLRVLSTIQSLTFINISHNLFSGPVPPSLTKFLNSSPTSFSGNSDLCINCPA 732

Query:   472 PDTS-PE 477
                + PE
Sbjct:   733 DGLACPE 739

GO:0005524 "ATP binding" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=NAS

GO:0019199 "transmembrane receptor protein kinase activity" evidence=NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00190765 SubName- Full=Putative uncharacterized protein; (947 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	833
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-99
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-66
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-56
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-53
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-52
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	2e-25
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	1e-21
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	7e-20
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-16
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	1e-14
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	1e-14
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	2e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-13
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	1e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-13
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	9e-13
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	7e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-11
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	4e-11
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	5e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	1e-09
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	4e-09
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	9e-09
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	1e-08
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	2e-08
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	2e-08
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	2e-08
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	2e-08
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	5e-08
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	5e-08
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	5e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-08
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	6e-08
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	6e-08
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	7e-08
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	9e-08
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	1e-07
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	1e-07
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	2e-07
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	2e-07
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	2e-07
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	3e-07
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	4e-07
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	4e-07
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	5e-07
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	5e-07
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	5e-07
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	5e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-07
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	7e-07
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	7e-07
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	9e-07
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	1e-06
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	2e-06
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	3e-06
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	3e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-06
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	4e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-06
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	6e-06
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	7e-06
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	8e-06
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	1e-05
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	1e-05
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	1e-05
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	1e-05
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	2e-05
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	2e-05
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	3e-05
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	3e-05
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	5e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-05
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	6e-05
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	6e-05
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	7e-05
cd05576	237	cd05576, STKc_RPK118_like, Catalytic domain of the	7e-05
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	8e-05
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	8e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-05
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	9e-05
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	1e-04
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	1e-04
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	2e-04
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	2e-04
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	2e-04
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	2e-04
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	2e-04
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	2e-04
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	3e-04
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	3e-04
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	4e-04
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	4e-04
PTZ00267	478	PTZ00267, PTZ00267, NIMA-related protein kinase; P	5e-04
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	6e-04
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	6e-04
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	6e-04
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	7e-04
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	7e-04
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	7e-04
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	8e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
PHA02988	283	PHA02988, PHA02988, hypothetical protein; Provisio	0.001
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	0.001
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	0.001
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	0.001
cd05104	375	cd05104, PTKc_Kit, Catalytic domain of the Protein	0.001
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	0.001
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	0.001
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	0.001
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	0.001
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	0.002
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	0.002
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	0.002
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	0.002
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	0.002
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	0.002
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	0.002
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	0.002
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	0.002
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	0.002
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	0.003
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	0.003
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	0.003
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	0.003
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	0.003
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	0.003
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	0.004
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	0.004
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	0.004
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	0.004
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  329 bits (846), Expect = 4e-99
 Identities = 257/863 (29%), Positives = 408/863 (47%), Gaps = 77/863 (8%)

Query: 10  LKLLNFSKNELVSLPTFNGFA-GLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNG 68
           L+ LN S N   +     G    LE LD S+N L+G I        SLK L+L  N   G
Sbjct: 120 LRYLNLSNNNF-TGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG 178

Query: 69  FLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKL 128
            +P +L    +LE L L+ N   G+IP+ +   ++L  I L  NNLSG +P  IG L+ L
Sbjct: 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238

Query: 129 EVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGI--TRFLRNLDLSYNKLLG 186
             L L  NNL G +P+SL ++  L      QNK SG +P  I   + L +LDLS N L G
Sbjct: 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298

Query: 187 VIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEIPSATFTSLEK 244
            IP  ++   NL+ + L  N   G +P  ++  P L  L+L +N   GEIP         
Sbjct: 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP-KNLGKHNN 357

Query: 245 LTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLS 304
           LT L+L  N+ TG IP+ L S  +L  L L  N L G +P  LG+   L+ + LQ N  S
Sbjct: 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417

Query: 305 GEIPSQFSQLKLLSTMNISWNSLSGSIPS-----------------FLSNL------TNL 341
           GE+PS+F++L L+  ++IS N+L G I S                 F   L        L
Sbjct: 418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRL 477

Query: 342 VNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIP--MMPPRLQIALNLSSNLFEG 399
            NL+L +N  +G++P  + ++  L++L+L  N+LSG IP  +   +  ++L+LS N   G
Sbjct: 478 ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSG 537

Query: 400 PIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVSVD 459
            IP +F+ +  L  LDLS N+ SGEIP+ L  + +L Q+ +++N L G +P    +++++
Sbjct: 538 QIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAIN 597

Query: 460 TT---GNLKLINV-TAPDTSPEKR-RKSVVVPIVIALAAAILAVGVVSIFVLSISRRFYR 514
            +   GN+ L    T     P KR RK+      I        V  +  F     R    
Sbjct: 598 ASAVAGNIDLCGGDTTSGLPPCKRVRKTPSWWFYITCTLGAFLVLALVAFGFVFIRGRNN 657

Query: 515 VKDEHLQLGEDISSPQVIQGNLLTGNGIHRSNIDFTKAMEAVANPL---NVELKTRFSTY 571
           ++ + ++  +     Q              S +  +  +  + + L   NV  + +    
Sbjct: 658 LELKRVENEDGTWELQFFD-----------SKVSKSITINDILSSLKEENVISRGKKGAS 706

Query: 572 YKA-VMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA 630
           YK   + +GM + +K++N  + I           E+  +GKL + N++  +    +   A
Sbjct: 707 YKGKSIKNGMQFVVKEINDVNSIPSS--------EIADMGKLQHPNIVKLIGLCRSEKGA 758

Query: 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRN 690
           YL +EY     L +VL       L W  R  IA+G+A+ L FLH   S  +++ +LS   
Sbjct: 759 YLIHEYIEGKNLSEVLRN-----LSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEK 813

Query: 691 IFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGV 750
           I +    EP +        +       + +    S  Y+ PE   T  +T   ++Y FG+
Sbjct: 814 IIIDGKDEPHL-------RLSLPGLLCTDTKCFISSAYVAPETRETKDITEKSDIYGFGL 866

Query: 751 ILLELLTGKTAVN---QGNE-LAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLK 806
           IL+ELLTGK+  +     +  + +W  R       LD  +D ++       +++++ V+ 
Sbjct: 867 ILIELLTGKSPADAEFGVHGSIVEWA-RYCYSDCHLDMWIDPSIRGDVSVNQNEIVEVMN 925

Query: 807 VAVACVSVSPEARPKMKSVLRML 829
           +A+ C +  P ARP    VL+ L
Sbjct: 926 LALHCTATDPTARPCANDVLKTL 948

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  239 bits (611), Expect = 1e-66
 Identities = 160/450 (35%), Positives = 243/450 (54%), Gaps = 15/450 (3%)

Query: 25  TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKT-KALEEL 83
           T N  + +  +D S  N++G I+     L  ++++NLS N+ +G +P ++  T  +L  L
Sbjct: 64  TCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYL 123

Query: 84  VLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLP 143
            LS N F G IP+G     NL  +DLS N LSG +P+ IG  S L+VL L  N L G++P
Sbjct: 124 NLSNNNFTGSIPRGSIP--NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP 181

Query: 144 TSLASITTLSRFAANQNKFSGSVPG--GITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTI 201
            SL ++T+L       N+  G +P   G  + L+ + L YN L G IP ++    +L  +
Sbjct: 182 NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241

Query: 202 DLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMI 259
           DL  N L G +P ++    NL  L L  N L G IP + F SL+KL  L+L +NS +G I
Sbjct: 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEI 300

Query: 260 PQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLST 319
           P+ +   ++L +L+L  N   G +P+ L SL  LQV+ L  NK SGEIP    +   L+ 
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV 360

Query: 320 MNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTI 379
           +++S N+L+G IP  L +  NL  L L  N+L G IP S+   RSL  ++L  N  SG +
Sbjct: 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420

Query: 380 PMMPPRLQIA--LNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQ 437
           P    +L +   L++S+N  +G I +    +  L++L L+ N+F G +P        L  
Sbjct: 421 PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLEN 479

Query: 438 LLLTNNQLSGVVP----KFSKWVSVDTTGN 463
           L L+ NQ SG VP      S+ + +  + N
Sbjct: 480 LDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  209 bits (533), Expect = 3e-56
 Identities = 143/409 (34%), Positives = 203/409 (49%), Gaps = 61/409 (14%)

Query: 51  DELVSLKSLNLSKN--KFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLID 108
           D L  L + N S +   + G    N  +  +++   LSG    G+I   I     +  I+
Sbjct: 43  DPLKYLSNWNSSADVCLWQGITCNNSSRVVSID---LSGKNISGKISSAIFRLPYIQTIN 99

Query: 109 LSANNLSGSVPDRIGELS-KLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVP 167
           LS N LSG +PD I   S  L  L LS NN                        F+GS+P
Sbjct: 100 LSNNQLSGPIPDDIFTTSSSLRYLNLSNNN------------------------FTGSIP 135

Query: 168 GGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRL 225
            G                        S PNL+T+DLS NML G +P ++    +L  L L
Sbjct: 136 RG------------------------SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDL 171

Query: 226 GTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPI 285
           G N+L+G+IP  + T+L  L +L L +N   G IP++LG  +SL  + L  N L+G +P 
Sbjct: 172 GGNVLVGKIP-NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY 230

Query: 286 QLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLN 345
           ++G L  L  ++L  N L+G IPS    LK L  + +  N LSG IP  + +L  L++L+
Sbjct: 231 EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290

Query: 346 LRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMP---PRLQIALNLSSNLFEGPIP 402
           L  N+L+G IP  +  +++L  L L  N  +G IP+     PRLQ+ L L SN F G IP
Sbjct: 291 LSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV-LQLWSNKFSGEIP 349

Query: 403 TTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPK 451
               + N L VLDLS N  +GEIP+ L     L +L+L +N L G +PK
Sbjct: 350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK 398

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  199 bits (508), Expect = 4e-53
 Identities = 126/360 (35%), Positives = 194/360 (53%), Gaps = 28/360 (7%)

Query: 3   SCGGIDGLKLLNFSKNELVSL--PTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLN 60
           S G +  L+ L   +N+L     P+      L  LD S N+L+G I     +L +L+ L+
Sbjct: 255 SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314

Query: 61  LSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPD 120
           L  N F G +P+ L     L+ L L  N F GEIPK +  + NLT++DLS NNL+G +P+
Sbjct: 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374

Query: 121 RIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRF--LRNLD 178
            +     L  LIL +N+L+G +P SL +  +L R     N FSG +P   T+   +  LD
Sbjct: 375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434

Query: 179 LSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSAT 238
           +S N L G I       P+LQ + L+ N   G LP                         
Sbjct: 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD------------------------ 470

Query: 239 FTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNL 298
               ++L  L+L  N F+G +P++LGS   L  L L++N+L+G +P +L S   L  ++L
Sbjct: 471 SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530

Query: 299 QLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNS 358
             N+LSG+IP+ FS++ +LS +++S N LSG IP  L N+ +LV +N+  N+L+GS+P++
Sbjct: 531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  197 bits (503), Expect = 1e-52
 Identities = 134/368 (36%), Positives = 189/368 (51%), Gaps = 56/368 (15%)

Query: 104 LTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFA-ANQNKF 162
           +  IDLS  N+SG +   I  L  ++ + LS N L G +P  + + ++  R+   + N F
Sbjct: 71  VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130

Query: 163 SGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVR 222
           +GS+P G                        S PNL+T+DLS NML G +P ++      
Sbjct: 131 TGSIPRG------------------------SIPNLETLDLSNNMLSGEIPNDIG----- 161

Query: 223 LRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGS 282
                             S   L  L+L  N   G IP  L +  SL  L LA N+L G 
Sbjct: 162 ------------------SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ 203

Query: 283 LPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLV 342
           +P +LG +  L+ + L  N LSGEIP +   L  L+ +++ +N+L+G IPS L NL NL 
Sbjct: 204 IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263

Query: 343 NLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQI--ALNLSSNLFEGP 400
            L L QN L+G IP SI +++ LI L L  N LSG IP +  +LQ    L+L SN F G 
Sbjct: 264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK 323

Query: 401 IPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVSVDT 460
           IP     L  L+VL L +N+FSGEIP+ L +   LT L L+ N L+G +P+      + +
Sbjct: 324 IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE-----GLCS 378

Query: 461 TGNL-KLI 467
           +GNL KLI
Sbjct: 379 SGNLFKLI 386

Length = 968

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score =  104 bits (262), Expect = 2e-25
 Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 12/191 (6%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           F T Y A    +G    IK +    K        +  +E+E+L KL++ N++        
Sbjct: 6   FGTVYLARDKKTGKKVAIKIIK---KEDSSSLLEELLREIEILKKLNHPNIVKLYGVFED 62

Query: 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL 686
            +  YL  EY   G+L D+L    E  L       I + + +GL +LH   SN I+  DL
Sbjct: 63  ENHLYLVMEYCEGGSLKDLLK-ENEGKLSEDEILRILLQILEGLEYLH---SNGIIHRDL 118

Query: 687 STRNIFLKSLK-EPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE-YAYTMRVTMAGN 744
              NI L S   + ++ D  L K++   KS   L T+ G+  Y+ PE        +   +
Sbjct: 119 KPENILLDSDNGKVKLADFGLSKLLTSDKSL--LKTIVGTPAYMAPEVLLGKGYYSEKSD 176

Query: 745 VYSFGVILLEL 755
           ++S GVIL EL
Sbjct: 177 IWSLGVILYEL 187

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 95.0 bits (237), Expect = 1e-21
 Identities = 78/269 (28%), Positives = 110/269 (40%), Gaps = 35/269 (13%)

Query: 568 FSTYYKAVMPS-GMSYFIKKLNWSDKIFQLGSHHKFDK----ELEVLGKLSNSNVMTPLA 622
           F T YKA     G    +K L    +        K D+    E+ +L +LS+ N++  + 
Sbjct: 12  FGTVYKAKHKGTGKIVAVKILKKRSE------KSKKDQTARREIRILRRLSHPNIVRLID 65

Query: 623 YVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPIL 682
                D  YL  EY   G LFD L       L       IA+ + +GL +LH   SN I+
Sbjct: 66  AFEDKDHLYLVMEYCEGGDLFDYLS--RGGPLSEDEAKKIALQILRGLEYLH---SNGII 120

Query: 683 LLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE-----YAYTM 737
             DL   NI L      +I D  L K +   KS+ SL+T  G+  Y+ PE       Y  
Sbjct: 121 HRDLKPENILLDENGVVKIADFGLAKKL--LKSSSSLTTFVGTPWYMAPEVLLGGNGYGP 178

Query: 738 RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAV 797
           +V    +V+S GVIL ELLTGK   +  N L         Q   +  IL   +       
Sbjct: 179 KV----DVWSLGVILYELLTGKPPFSGENIL--------DQLQLIRRILGPPLEFDEPKW 226

Query: 798 RSQMLTVLKVAVACVSVSPEARPKMKSVL 826
            S       +   C++  P  RP  + +L
Sbjct: 227 SSGSEEAKDLIKKCLNKDPSKRPTAEEIL 255

Length = 260

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 89.5 bits (223), Expect = 7e-20
 Identities = 70/270 (25%), Positives = 107/270 (39%), Gaps = 39/270 (14%)

Query: 568 FSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           F   Y A    +G    IK +    K        +  +E+++L KL + N++        
Sbjct: 12  FGKVYLARDKKTGKLVAIKVIK---KKKIKKDRERILREIKILKKLKHPNIVRLYDVFED 68

Query: 627 SDSAYLFYEYAPKGTLFDVL--HGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLL 684
            D  YL  EY   G LFD+L   G L    D A  Y     +   L +LH   S  I+  
Sbjct: 69  EDKLYLVMEYCEGGDLFDLLKKRGRLS--EDEARFY--LRQILSALEYLH---SKGIVHR 121

Query: 685 DLSTRNIFLKS---LKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTM 741
           DL   NI L     +K   + D  L + +DP      L+T  G+  Y+ PE         
Sbjct: 122 DLKPENILLDEDGHVK---LADFGLARQLDP---GEKLTTFVGTPEYMAPEVLLGKGYGK 175

Query: 742 AGNVYSFGVILLELLTGKT---AVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVR 798
           A +++S GVIL ELLTGK      +Q  EL K + +            ++++S  +  + 
Sbjct: 176 AVDIWSLGVILYELLTGKPPFPGDDQLLELFKKIGKP----KPPFPPPEWDISPEAKDLI 231

Query: 799 SQMLTVLKVAVACVSVSPEARPKMKSVLRM 828
            ++L             PE R   +  L+ 
Sbjct: 232 RKLLV----------KDPEKRLTAEEALQH 251

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 82.6 bits (204), Expect = 3e-16
 Identities = 36/104 (34%), Positives = 61/104 (58%), Gaps = 3/104 (2%)

Query: 46  INLQFDELVS---LKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYR 102
            + QFD       +  L L      GF+P ++ K + L+ + LSGN+  G IP  +    
Sbjct: 407 ADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSIT 466

Query: 103 NLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSL 146
           +L ++DLS N+ +GS+P+ +G+L+ L +L L+ N+L GR+P +L
Sbjct: 467 SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 74.5 bits (184), Expect = 1e-14
 Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 16/175 (9%)

Query: 592 KIFQLGSHHK----FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLH 647
           K  + G+  +    F +E  ++ KLS+ N++  L      +  Y+  EY P G L D L 
Sbjct: 34  KTLKEGASEEEREEFLEEASIMKKLSHPNIVRLLGVCTQGEPLYIVTEYMPGGDLLDFLR 93

Query: 648 GCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC 707
                 L       +A+ +A+G+ +L    S   +  DL+ RN  +      +I D  L 
Sbjct: 94  KH-GEKLTLKDLLQMALQIAKGMEYLE---SKNFVHRDLAARNCLVTENLVVKISDFGLS 149

Query: 708 KVIDPS----KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTG 758
           + I       K  G    +     ++ PE     + T   +V+SFGV+L E+ T 
Sbjct: 150 RDIYEDDYYRKRGGGKLPIK----WMAPESLKDGKFTSKSDVWSFGVLLWEIFTL 200

Length = 258

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 74.1 bits (183), Expect = 1e-14
 Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 14/161 (8%)

Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYS 661
           F +E  ++ KL + N++  L      +   +  EY P G L D L       L  +   S
Sbjct: 48  FLREARIMRKLDHPNIVKLLGVCTEEEPLMIVMEYMPGGDLLDYLRKNRPKELSLSDLLS 107

Query: 662 IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST 721
            A+ +A+G+ +L    S   +  DL+ RN  +      +I D  L + +           
Sbjct: 108 FALQIARGMEYLE---SKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDD------Y 158

Query: 722 VAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
                G +P     PE     + T   +V+SFGV+L E+ T
Sbjct: 159 YKVKGGKLPIRWMAPESLKEGKFTSKSDVWSFGVLLWEIFT 199

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 74.1 bits (183), Expect = 2e-14
 Identities = 54/240 (22%), Positives = 95/240 (39%), Gaps = 31/240 (12%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGC-------LENA 653
            F KE  V+ KL + NV+  L      +  YL  EY   G L D L           ++ 
Sbjct: 42  DFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKST 101

Query: 654 LDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713
           L      S A+ +A+G+ +L    S   +  DL+ RN  +      +I D  L + +   
Sbjct: 102 LSLKDLLSFAIQIAKGMEYLA---SKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDD 158

Query: 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKT---AVNQGNELA 769
                 +     + ++ PE       T   +V+SFGV+L E+ T G T    +    E+ 
Sbjct: 159 DYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGL-SNEEVL 217

Query: 770 KWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
           +++ R   +  K ++  D                + ++ ++C  + PE RP    ++  L
Sbjct: 218 EYL-RKGYRLPKPEYCPD---------------ELYELMLSCWQLDPEDRPTFSELVERL 261

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 75.2 bits (185), Expect = 6e-14
 Identities = 37/85 (43%), Positives = 54/85 (63%)

Query: 296 MNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSI 355
           + L    L G IP+  S+L+ L ++N+S NS+ G+IP  L ++T+L  L+L  N+ NGSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 356 PNSITNMRSLIELQLGGNQLSGTIP 380
           P S+  + SL  L L GN LSG +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 74.1 bits (182), Expect = 1e-13
 Identities = 41/107 (38%), Positives = 51/107 (47%), Gaps = 22/107 (20%)

Query: 344 LNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPT 403
           L L    L G IPN I+ +R                      LQ ++NLS N   G IP 
Sbjct: 423 LGLDNQGLRGFIPNDISKLR---------------------HLQ-SINLSGNSIRGNIPP 460

Query: 404 TFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVP 450
           +   +  LEVLDLS N F+G IP+ L Q+ +L  L L  N LSG VP
Sbjct: 461 SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 71.8 bits (177), Expect = 1e-13
 Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 11/160 (6%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY 660
           +F +E  ++ KL + NV+  L      +  Y+  EY   G L   L       L  +   
Sbjct: 47  EFLREARIMRKLDHPNVVKLLGVCTEEEPLYIVMEYMEGGDLLSYLRK-NRPKLSLSDLL 105

Query: 661 SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS---KSTG 717
           S A+ +A+G+ +L    S   +  DL+ RN  +      +I D  L + +      +  G
Sbjct: 106 SFALQIARGMEYLE---SKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYRKRG 162

Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
               +     ++ PE     + T   +V+SFGV+L E+ T
Sbjct: 163 GKLPIR----WMAPESLKEGKFTSKSDVWSFGVLLWEIFT 198

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 73.3 bits (180), Expect = 3e-13
 Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 1/80 (1%)

Query: 230 LIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGS 289
           L G IP+   + L  L  + L  NS  G IP  LGS  SL +L+L+ N  NGS+P  LG 
Sbjct: 430 LRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488

Query: 290 LGILQVMNLQLNKLSGEIPS 309
           L  L+++NL  N LSG +P+
Sbjct: 489 LTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 72.2 bits (177), Expect = 5e-13
 Identities = 35/88 (39%), Positives = 51/88 (57%)

Query: 248 LELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEI 307
           L LDN    G IP  +   R L  +NL+ N + G++P  LGS+  L+V++L  N  +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 308 PSQFSQLKLLSTMNISWNSLSGSIPSFL 335
           P    QL  L  +N++ NSLSG +P+ L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 68.7 bits (169), Expect = 9e-13
 Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 11/162 (6%)

Query: 602 FDKELEVLGKLSNSNVMTPLAYVL--ASDSAYLFYEYAPKGTLFDVLH--GCLENALDWA 657
            ++E+ +L  L + N++           ++  +F EY   G+L  +L   G L   +   
Sbjct: 46  LEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLKKFGKLPEPV--I 103

Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
            +Y+  +   +GLA+LH   SN I+  D+   NI + S    ++ D    K +   ++  
Sbjct: 104 RKYTRQI--LEGLAYLH---SNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGE 158

Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
              +V G+  ++ PE         A +++S G  ++E+ TGK
Sbjct: 159 GTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGK 200

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 67.8 bits (164), Expect = 7e-12
 Identities = 58/275 (21%), Positives = 101/275 (36%), Gaps = 30/275 (10%)

Query: 568 FSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPL-AYVLA 626
           F   Y A         +K L       +     +F +E+++L  L++   +  L  +   
Sbjct: 13  FGEVYLAR--DRKLVALKVLA-KKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQD 69

Query: 627 SDSAYLFYEYAPKGTLFDVLHGC-LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLD 685
             S YL  EY   G+L D+L     +  L  +    I   +   L +LH   S  I+  D
Sbjct: 70  EGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLH---SKGIIHRD 126

Query: 686 LSTRNIFL-KSLKEPQIGDIELCKVIDPSKSTGS----LSTVAGSVGYIPPEYAYTM--- 737
           +   NI L +  +  ++ D  L K++    ST S     ST  G+ GY+ PE    +   
Sbjct: 127 IKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLA 186

Query: 738 RVTMAGNVYSFGVILLELLTGKT------AVNQGNELAKWVLRNSAQQDKLDHILDFNVS 791
             + + +++S G+ L ELLTG          +  ++  K +L                  
Sbjct: 187 YASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLASPLSPSNPEL 246

Query: 792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVL 826
            +  A          +    ++  P+ R    S L
Sbjct: 247 ISKAAS--------DLLKKLLAKDPKNRLSSSSDL 273

Length = 384

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.4 bits (162), Expect = 3e-11
 Identities = 37/108 (34%), Positives = 52/108 (48%), Gaps = 11/108 (10%)

Query: 272 LNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSI 331
           L L    L G +P  +  L  LQ +NL  N + G IP     +  L  +++S+NS +GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 332 PSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTI 379
           P  L  LT+L  LNL  N+L+G +P +           LGG  L    
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAA-----------LGGRLLHRAS 519

Length = 623

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 63.7 bits (155), Expect = 4e-11
 Identities = 55/206 (26%), Positives = 91/206 (44%), Gaps = 8/206 (3%)

Query: 565 KTRFSTYYKAVMPS-GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAY 623
           K  F   +K V  +    Y +K+++ S K+ +       D E  VL KL +S ++     
Sbjct: 10  KGSFGVVFKVVRKADKRVYAMKQIDLS-KMNRREREEAID-EARVLAKLDSSYIIRYYES 67

Query: 624 VLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILL 683
            L      +  EYA  G L  +L       L     +   + +  GLA LH   S  IL 
Sbjct: 68  FLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLH---SKKILH 124

Query: 684 LDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAG 743
            D+ + N+FL +    +IGD+ + K++    +T   +T+ G+  Y+ PE           
Sbjct: 125 RDIKSLNLFLDAYDNVKIGDLGVAKLLSD--NTNFANTIVGTPYYLSPELCEDKPYNEKS 182

Query: 744 NVYSFGVILLELLTGKTAVNQGNELA 769
           +V++ GV+L E  TGK   +  N+ A
Sbjct: 183 DVWALGVVLYECCTGKHPFDANNQGA 208

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 60.5 bits (147), Expect = 5e-10
 Identities = 52/228 (22%), Positives = 92/228 (40%), Gaps = 23/228 (10%)

Query: 605 ELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAV 664
           E+ +L  L + N++    + +  ++  +  EYA  GTL+D +        +      +  
Sbjct: 49  EIVILSLLQHPNIIAYYNHFMDDNTLLIEMEYANGGTLYDKIVRQKGQLFE--EEMVLWY 106

Query: 665 --GVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
              +   ++++H      IL  D+ T NIFL      ++GD  + K++    S     TV
Sbjct: 107 LFQIVSAVSYIH---KAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMA--ETV 161

Query: 723 AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL 782
            G+  Y+ PE    ++     ++++ G +L ELLT K   +  N L    L     Q   
Sbjct: 162 VGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNPLN---LVVKIVQGNY 218

Query: 783 DHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLL 830
             +    VS  S  + S       +  + +   PE RP    VL   L
Sbjct: 219 TPV----VSVYSSELIS-------LVHSLLQQDPEKRPTADEVLDQPL 255

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.4 bits (149), Expect = 1e-09
 Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 23/118 (19%)

Query: 173 FLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIG 232
           F+  L L    L G IP D+    +LQ+I+LS N + G++P +               +G
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS---------------LG 463

Query: 233 EIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSL 290
            I S        L  L+L  NSF G IP+ LG   SL +LNL  N L+G +P  LG  
Sbjct: 464 SITS--------LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 15/163 (9%)

Query: 602 FDKELEVLGKLSNSNVM--TPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
           F++E+E+L  L + N++    +       S  L  EY P G+L D L     + ++    
Sbjct: 53  FEREIEILRTLDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQR-HRDQINLKRL 111

Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
              +  + +G+ +L    S   +  DL+ RNI ++S    +I D  L KV+   K     
Sbjct: 112 LLFSSQICKGMDYLG---SQRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDY--- 165

Query: 720 STVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
                  G  P     PE   T + + A +V+SFGV L EL T
Sbjct: 166 -YYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFT 207

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 64/268 (23%), Positives = 116/268 (43%), Gaps = 39/268 (14%)

Query: 570 TYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD 628
           T Y A+ + +G    IK++N   +            E+ V+ +  + N++  L   L  D
Sbjct: 34  TVYTAIDVATGQEVAIKQMNLQQQ----PKKELIINEILVMRENKHPNIVNYLDSYLVGD 89

Query: 629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLST 688
             ++  EY   G+L DV+    E  +D     ++     Q L FLH   SN ++  D+ +
Sbjct: 90  ELWVVMEYLAGGSLTDVV---TETCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKS 143

Query: 689 RNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEY----AYTMRVTMAGN 744
            NI L      ++ D   C  I P +S    ST+ G+  ++ PE     AY  +V    +
Sbjct: 144 DNILLGMDGSVKLTDFGFCAQITPEQS--KRSTMVGTPYWMAPEVVTRKAYGPKV----D 197

Query: 745 VYSFGVILLELLTGK--------------TAVNQGNELAKWVLRNSAQQDKLDHILDFNV 790
           ++S G++ +E++ G+               A N   EL      ++  +D L+  L+ +V
Sbjct: 198 IWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDV 257

Query: 791 SRTSLAVRSQMLT--VLKVAVACVSVSP 816
            +   A   ++L    LK+A    S++P
Sbjct: 258 EKRGSA--KELLQHPFLKIAKPLSSLTP 283

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 3e-09
 Identities = 34/89 (38%), Positives = 52/89 (58%)

Query: 35  LDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEI 94
           L   +  L G I     +L  L+S+NLS N   G +P +LG   +LE L LS N+F+G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 95  PKGIADYRNLTLIDLSANNLSGSVPDRIG 123
           P+ +    +L +++L+ N+LSG VP  +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 58.2 bits (140), Expect = 4e-09
 Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 25/237 (10%)

Query: 605 ELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAV 664
           E+ V+ +L N N++  L   L  D  ++  EY   G+L DV+    E  +D A   ++  
Sbjct: 66  EILVMKELKNPNIVNFLDSFLVGDELFVVMEYLAGGSLTDVV---TETCMDEAQIAAVCR 122

Query: 665 GVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAG 724
              Q L FLH   +N ++  D+ + N+ L      ++ D   C  I P +S    ST+ G
Sbjct: 123 ECLQALEFLH---ANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQS--KRSTMVG 177

Query: 725 SVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK--------------TAVNQGNELAK 770
           +  ++ PE           +++S G++ +E++ G+               A N   EL  
Sbjct: 178 TPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQN 237

Query: 771 WVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSP---EARPKMKS 824
               +   +D L+  L+ +V +   A        LK+A    S++P    A+  MKS
Sbjct: 238 PEKLSPIFRDFLNRCLEMDVEKRGSAKELLQHPFLKLAKPLSSLTPLILAAKEAMKS 294

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 56.8 bits (138), Expect = 9e-09
 Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 19/180 (10%)

Query: 584 IKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLF 643
           IK +    K        K   E+++L K  + N++      L  D  ++  E+   G+L 
Sbjct: 30  IKVIKLESK----EKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCSGGSLK 85

Query: 644 DVLHGCL----ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEP 699
           D+L        E      + Y +   + +GL +LH   SN I+  D+   NI L S  E 
Sbjct: 86  DLLKSTNQTLTE---SQIA-Y-VCKELLKGLEYLH---SNGIIHRDIKAANILLTSDGEV 137

Query: 700 QIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
           ++ D  L   +  +K+    +T+ G+  ++ PE           +++S G+  +EL  GK
Sbjct: 138 KLIDFGLSAQLSDTKAR---NTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGK 194

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 56.2 bits (135), Expect = 1e-08
 Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 5/156 (3%)

Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYS 661
           F +E +++ KL +   + PL  V++ +  Y+  E+  KG+L D L       L       
Sbjct: 48  FLQEAQIMKKLRHDK-LVPLYAVVSEEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVD 106

Query: 662 IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST 721
           +A  +A G+A++        +  DL   NI +      +I D  L ++I+ ++ T     
Sbjct: 107 MAAQIADGMAYIERMN---YIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTAR-QG 162

Query: 722 VAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
               + +  PE A   R T+  +V+SFG++L EL+T
Sbjct: 163 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVT 198

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 5/159 (3%)

Query: 599 HHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWAS 658
              F KE++ L +L + ++++  A     +  Y+  E   KG+L   L       L  AS
Sbjct: 46  QQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITELMEKGSLLAFLRSPEGQVLPVAS 105

Query: 659 RYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS 718
              +A  VA+G+A+L        +  DL+ RNI +      ++ D  L ++I       S
Sbjct: 106 LIDMACQVAEGMAYLE---EQNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSS 162

Query: 719 LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
              +     +  PE A     +   +V+SFG++L E+ T
Sbjct: 163 DKKI--PYKWTAPEAASHGTFSTKSDVWSFGILLYEMFT 199

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.5 bits (139), Expect = 2e-08
 Identities = 25/64 (39%), Positives = 40/64 (62%)

Query: 32  LEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFH 91
           L+ ++ S N++ GNI      + SL+ L+LS N FNG +P +LG+  +L  L L+GN+  
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 92  GEIP 95
           G +P
Sbjct: 504 GRVP 507

Length = 623

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 56.7 bits (136), Expect = 2e-08
 Identities = 63/262 (24%), Positives = 110/262 (41%), Gaps = 27/262 (10%)

Query: 570 TYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD 628
           T Y A+ + +G    IK++N    + Q         E+ V+ +  N N++  L   L  D
Sbjct: 34  TVYTAIDIATGQEVAIKQMN----LQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGD 89

Query: 629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLST 688
             ++  EY   G+L DV+    E  +D     ++     Q L FLH   SN ++  D+ +
Sbjct: 90  ELWVVMEYLAGGSLTDVV---TETCMDEGQIAAVCRECLQALDFLH---SNQVIHRDIKS 143

Query: 689 RNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSF 748
            NI L      ++ D   C  I P +S    ST+ G+  ++ PE           +++S 
Sbjct: 144 DNILLGMDGSVKLTDFGFCAQITPEQS--KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSL 201

Query: 749 GVILLELLTGK--------------TAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS 794
           G++ +E++ G+               A N   EL      ++  +D L+  L+ +V R  
Sbjct: 202 GIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPERLSAVFRDFLNRCLEMDVDRRG 261

Query: 795 LAVRSQMLTVLKVAVACVSVSP 816
            A        LK+A    S++P
Sbjct: 262 SAKELLQHPFLKLAKPLSSLTP 283

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 17/168 (10%)

Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL--------------H 647
           F +E E++  L + N++  L          + +EY   G L + L               
Sbjct: 55  FRQEAELMSDLQHPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGD 114

Query: 648 GCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC 707
             ++++LD +    IA+ +A G+ +L   +S+  +  DL+ RN  +      +I D  L 
Sbjct: 115 ETVKSSLDCSDFLHIAIQIAAGMEYL---SSHHFVHRDLAARNCLVGEGLTVKISDFGLS 171

Query: 708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLEL 755
           + I  +      S     V ++PPE     + T   +++SFGV+L E+
Sbjct: 172 RDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEI 219

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 59/270 (21%), Positives = 105/270 (38%), Gaps = 36/270 (13%)

Query: 565 KTRFSTYYKAVMPS-GMSYFIKKLNWSDKIFQLGSHHKFDK-----ELEVLGKLSNSNVM 618
           K  + + YK    S    Y +K+++       LGS  + ++     E+ +L  +++ N++
Sbjct: 10  KGSYGSVYKVKRLSDNQFYALKEVD-------LGSMSQKEREDAVNEIRILASVNHPNII 62

Query: 619 TPLAYVLASDSAYLFYEYAPKGTLFDVL--HGCLENALDWASRYSIAVGVAQGLAFLHGF 676
           +     L  +   +  EYAP G L   +         +     + I + + +GL  LH  
Sbjct: 63  SYKEAFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALH-- 120

Query: 677 TSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT 736
               IL  DL + NI L +    +IGD+ + KV+          T  G+  Y+ PE    
Sbjct: 121 -EQKILHRDLKSANILLVANDLVKIGDLGISKVL----KKNMAKTQIGTPHYMAPEVWKG 175

Query: 737 MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLA 796
              +   +++S G +L E+ T          +    LR   Q+ K   I           
Sbjct: 176 RPYSYKSDIWSLGCLLYEMATFAPPFE-ARSMQD--LRYKVQRGKYPPI---------PP 223

Query: 797 VRSQMLTVLKVAVACVSVSPEARPKMKSVL 826
           + SQ L       + + V P+ RP    +L
Sbjct: 224 IYSQDLQ--NFIRSMLQVKPKLRPNCDKIL 251

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 55.8 bits (134), Expect = 2e-08
 Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 5/160 (3%)

Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E +V+ KL +  ++  L  V++ +  Y+  EY  KG+L D L G +   L   
Sbjct: 44  SPEAFLQEAQVMKKLRHEKLVQ-LYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLP 102

Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
               +A  +A G+A++        +  DL   NI +      ++ D  L ++I+ ++ T 
Sbjct: 103 QLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA 159

Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   + +  PE A   R T+  +V+SFG++L EL T
Sbjct: 160 R-QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT 198

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 55.0 bits (132), Expect = 5e-08
 Identities = 38/172 (22%), Positives = 78/172 (45%), Gaps = 18/172 (10%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL-------------- 646
           +F +E  ++ +L + N++  L  V       + +EY  +G L + L              
Sbjct: 53  EFQQEASLMAELHHPNIVCLLGVVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSD 112

Query: 647 -HGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIE 705
             G ++++LD      IA+ +A G+ +L   +S+  +  DL+ RNI +      +I D+ 
Sbjct: 113 EDGTVKSSLDHGDFLHIAIQIAAGMEYL---SSHFFVHKDLAARNILIGEQLHVKISDLG 169

Query: 706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
           L + I  +            + ++PPE     + +   +++SFGV+L E+ +
Sbjct: 170 LSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFS 221

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 55.1 bits (132), Expect = 5e-08
 Identities = 55/226 (24%), Positives = 96/226 (42%), Gaps = 22/226 (9%)

Query: 605 ELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAV 664
           E+ V+ +  N N++  L   L  D  ++  EY   G+L DV+    E  +D     ++  
Sbjct: 67  EILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVV---TETCMDEGQIAAVCR 123

Query: 665 GVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAG 724
              Q L FLH   SN ++  D+ + NI L      ++ D   C  I P +S    ST+ G
Sbjct: 124 ECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS--KRSTMVG 178

Query: 725 SVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK--------------TAVNQGNELAK 770
           +  ++ PE           +++S G++ +E++ G+               A N   EL  
Sbjct: 179 TPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQN 238

Query: 771 WVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSP 816
               ++  +D L+  LD +V +   A        LK+A    S++P
Sbjct: 239 PEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFLKIAKPLSSLTP 284

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 54.8 bits (132), Expect = 5e-08
 Identities = 47/182 (25%), Positives = 73/182 (40%), Gaps = 32/182 (17%)

Query: 599 HHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL--HGCLENALDW 656
              F++E E+L    + N++         D   + +EY   G L   L  HG     L  
Sbjct: 52  RKDFEREAELLTNFQHENIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKS 111

Query: 657 ----------ASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIEL 706
                     +    IAV +A G+ +L    S   +  DL+TRN          +G   +
Sbjct: 112 PDSPMGELTLSQLLQIAVQIASGMVYL---ASQHFVHRDLATRNCL--------VGYDLV 160

Query: 707 CKVIDPSKSTGSLST----VAGS----VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT- 757
            K+ D   S    +T    V G     + ++PPE     + T   +V+SFGV+L E+ T 
Sbjct: 161 VKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTY 220

Query: 758 GK 759
           GK
Sbjct: 221 GK 222

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.0 bits (135), Expect = 6e-08
 Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 107 IDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSV 166
           + L    L G +P+ I +L  L+ + LS N++ G +P SL SIT+L     + N F+GS+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 167 PGGITRF--LRNLDLSYNKLLGVIP 189
           P  + +   LR L+L+ N L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 54.5 bits (131), Expect = 6e-08
 Identities = 51/163 (31%), Positives = 74/163 (45%), Gaps = 7/163 (4%)

Query: 605 ELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAV 664
           E +VL  LS+ N++      L   +  +  EYAP GTL + +     + LD     +I  
Sbjct: 49  ECQVLKLLSHPNIIEYYENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLD---EDTILH 105

Query: 665 GVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEP-QIGDIELCKVIDPSKSTGSLSTVA 723
              Q L  LH   +  IL  DL T+NI L   K   +IGD  + K++  SKS     TV 
Sbjct: 106 FFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILS-SKSKA--YTVV 162

Query: 724 GSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGN 766
           G+  YI PE           ++++ G +L EL + K A    N
Sbjct: 163 GTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAAN 205

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 54.6 bits (132), Expect = 6e-08
 Identities = 51/186 (27%), Positives = 75/186 (40%), Gaps = 18/186 (9%)

Query: 582 YFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKG 640
           Y IK +  +D I +     +   E ++L +  +  V+  L Y        YL  EY P G
Sbjct: 21  YAIKVIKKADMIRK-NQVDQVLTERDILSQAQSPYVVK-LYYSFQGKKNLYLVMEYLPGG 78

Query: 641 TLFDVLH--GCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE 698
            L  +L   G L+   D A  Y     +   L +LH   SN I+  DL   NI + S   
Sbjct: 79  DLASLLENVGSLDE--DVARIYI--AEIVLALEYLH---SNGIIHRDLKPDNILIDSNGH 131

Query: 699 PQIGDIELCKV------IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVIL 752
            ++ D  L KV      I+ +        + G+  YI PE       +   + +S G IL
Sbjct: 132 LKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCIL 191

Query: 753 LELLTG 758
            E L G
Sbjct: 192 YEFLVG 197

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 54.1 bits (131), Expect = 7e-08
 Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 16/196 (8%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
               YK    P+G  Y +KK++            +  +EL+ L    +  V+        
Sbjct: 14  SGVVYKVRHKPTGKIYALKKIHVDGDEEFR---KQLLRELKTLRSCESPYVVKCYGAFYK 70

Query: 627 SDSAYLFYEYAPKGTLFDVL--HGCL-ENALDWASRYSIAVGVAQGLAFLHGFTSNPILL 683
                +  EY   G+L D+L   G + E  L       IA  + +GL +LH  T   I+ 
Sbjct: 71  EGEISIVLEYMDGGSLADLLKKVGKIPEPVLA-----YIARQILKGLDYLH--TKRHIIH 123

Query: 684 LDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAG 743
            D+   N+ + S  E +I D  + KV++ +      +T  G+V Y+ PE       + A 
Sbjct: 124 RDIKPSNLLINSKGEVKIADFGISKVLENT--LDQCNTFVGTVTYMSPERIQGESYSYAA 181

Query: 744 NVYSFGVILLELLTGK 759
           +++S G+ LLE   GK
Sbjct: 182 DIWSLGLTLLECALGK 197

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 54.6 bits (131), Expect = 9e-08
 Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 29/176 (16%)

Query: 669 GLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK--VIDPSKSTGSLSTVAGSV 726
           GL FLH   S  I+  DL   N+ L      +I D  +CK  V   +++    ST  G+ 
Sbjct: 108 GLQFLH---SKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRA----STFCGTP 160

Query: 727 GYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE-------------LAKWVL 773
            YI PE    ++ T + + +SFGV+L E+L G++  +  +E               +W+ 
Sbjct: 161 DYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDELFESIRVDTPHYPRWIT 220

Query: 774 RNSAQQDKLDHILDFNVSRT-----SLAVRSQMLTVLKVAVACVSVSPEARPKMKS 824
           + S  +D L+ + + + +R      ++       T+   A+    + P  +PK+KS
Sbjct: 221 KES--KDILEKLFERDPTRRLGVVGNIRGHPFFKTINWTALEKRELDPPFKPKVKS 274

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 9/155 (5%)

Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASRY 660
           F  E  V+ +L +SN++  L  ++      Y+  EY  KG+L D L     + L      
Sbjct: 46  FLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLL 105

Query: 661 SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLS 720
             ++ V + + +L     N  +  DL+ RN+ +      ++ D  L K    ++ TG L 
Sbjct: 106 KFSLDVCEAMEYLEA---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKL- 161

Query: 721 TVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLEL 755
                V +  PE     + +   +V+SFG++L E+
Sbjct: 162 ----PVKWTAPEALREKKFSTKSDVWSFGILLWEI 192

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 11/161 (6%)

Query: 603 DKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL--HGCLENALDWASRY 660
             E+E L  L + N++  L +    +   +F EY P G++   L  +G  E  L      
Sbjct: 56  RSEIETLKDLDHLNIVQYLGFETTEEYLSIFLEYVPGGSIGSCLRTYGRFEEQL----VR 111

Query: 661 SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLS 720
                V +GLA+LH   S  IL  DL   N+ + +    +I D  + K  D         
Sbjct: 112 FFTEQVLEGLAYLH---SKGILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNM 168

Query: 721 TVAGSVGYIPPEYAYTMRVTMAGNV--YSFGVILLELLTGK 759
           ++ GSV ++ PE  ++     +  V  +S G ++LE+  G+
Sbjct: 169 SMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGR 209

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 50/201 (24%), Positives = 93/201 (46%), Gaps = 15/201 (7%)

Query: 567 RFSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVL 625
            F   Y AV + +G    +K++   D      +  +   E++VL  L + N++      +
Sbjct: 12  TFGKVYTAVNLDTGELMAVKEIRIQDN--DPKTIKEIADEMKVLELLKHPNLVKYYGVEV 69

Query: 626 ASDSAYLFYEYAPKGTLFDVL-HGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLL 684
             +  Y+F EY   GTL ++L HG + +       Y++   + +GLA+LH   S+ I+  
Sbjct: 70  HREKVYIFMEYCSGGTLEELLEHGRILD-EHVIRVYTLQ--LLEGLAYLH---SHGIVHR 123

Query: 685 DLSTRNIFLKSLKEPQIGDIELCKVIDPSKST--GSLSTVAGSVGYIPPE-YAYTMRVTM 741
           D+   NIFL      ++GD      +  + +T    + ++AG+  Y+ PE          
Sbjct: 124 DIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGH 183

Query: 742 AG--NVYSFGVILLELLTGKT 760
               +++S G ++LE+ TGK 
Sbjct: 184 GRAADIWSLGCVVLEMATGKR 204

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 4/78 (5%)

Query: 164 GSVPGGITRF--LRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS--PN 219
           G +P  I++   L++++LS N + G IP  L S  +L+ +DLS N   GS+P+++    +
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 220 LVRLRLGTNLLIGEIPSA 237
           L  L L  N L G +P+A
Sbjct: 492 LRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 5/160 (3%)

Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E +++ KL +  ++  L  V++ +  Y+  EY  KG+L D L      AL   
Sbjct: 44  SPESFLEEAQIMKKLRHDKLVQ-LYAVVSEEPIYIVTEYMSKGSLLDFLKDGEGRALKLP 102

Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
           +   +A  VA G+A++        +  DL + NI +      +I D  L ++I+ ++ T 
Sbjct: 103 NLVDMAAQVAAGMAYIERMN---YIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTA 159

Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   + +  PE A   R T+  +V+SFG++L EL+T
Sbjct: 160 R-QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVT 198

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 7/159 (4%)

Query: 602 FDKELEVLGKLSNSNVMT--PLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
           F++E+E+L  L + N++    + Y     +  L  EY P G+L D L    E  LD    
Sbjct: 52  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHRER-LDHRKL 110

Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
              A  + +G+ +L    S   +  DL+TRNI ++S    +IGD  L KV+   K    +
Sbjct: 111 LLYASQICKGMEYL---GSKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKV 167

Query: 720 STVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                S + +  PE     + ++A +V+SFGV+L EL T
Sbjct: 168 REPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 206

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 23/164 (14%)

Query: 605 ELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVL--HGCL-ENALDWASRY 660
           E  +L ++++  ++  L Y   ++   YL  EYAP G LF  L   G   E   + A  Y
Sbjct: 43  ERNILSRINHPFIVK-LHYAFQTEEKLYLVLEYAPGGELFSHLSKEGRFSE---ERARFY 98

Query: 661 SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLS 720
             A  +   L +LH   S  I+  DL   NI L +    ++ D  L K +  S      +
Sbjct: 99  --AAEIVLALEYLH---SLGIIYRDLKPENILLDADGHIKLTDFGLAKEL--SSEGSRTN 151

Query: 721 TVAGSVGYIPPEY----AYTMRVTMAGNVYSFGVILLELLTGKT 760
           T  G+  Y+ PE      Y   V      +S GV+L E+LTGK 
Sbjct: 152 TFCGTPEYLAPEVLLGKGYGKAVDW----WSLGVLLYEMLTGKP 191

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 21/196 (10%)

Query: 578 SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYA 637
            G  Y IK++N S          +  KE+ VL  + + N++        + + Y+  +Y 
Sbjct: 24  DGKQYVIKEINISK--MSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDYC 81

Query: 638 PKGTLFDVLH---GCL---ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNI 691
             G L+  ++   G L   +  LDW       V +   L  +H      IL  D+ ++NI
Sbjct: 82  EGGDLYKKINAQRGVLFPEDQILDWF------VQICLALKHVH---DRKILHRDIKSQNI 132

Query: 692 FLKSLKEPQIGDIELCKVIDPSKSTGSLS-TVAGSVGYIPPEYAYTMRVTMAGNVYSFGV 750
           FL      ++GD  + +V++   ST  L+ T  G+  Y+ PE           ++++ G 
Sbjct: 133 FLTKDGTIKLGDFGIARVLN---STVELARTCIGTPYYLSPEICENRPYNNKSDIWALGC 189

Query: 751 ILLELLTGKTAVNQGN 766
           +L E+ T K A   GN
Sbjct: 190 VLYEMCTLKHAFEAGN 205

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 57/243 (23%), Positives = 93/243 (38%), Gaps = 32/243 (13%)

Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLE---NALDWAS 658
           F +E++   +L++ NV+  L   + S    L  E+ P G L + L               
Sbjct: 42  FLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDV 101

Query: 659 RYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGD--IELCKVIDPSKST 716
              +A  VA GL +LH       +  DL+ RN  L +    +IGD  + L +  +    T
Sbjct: 102 LQRMACEVASGLLWLH---QADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYIT 158

Query: 717 GSLSTVAGSVGYIPPEYA-------YTMRVTMAGNVYSFGVILLELLTGKTA--VNQGNE 767
                V   + ++ PE              T   N++S GV + EL T       +  +E
Sbjct: 159 KDCHAVP--LRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDE 216

Query: 768 -LAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVL 826
            + K V+R   Q  KL         +  L    +   V++    C  + PE RP  + V 
Sbjct: 217 QVLKQVVRE--QDIKLPK------PQLDLKYSDRWYEVMQF---C-WLDPETRPTAEEVH 264

Query: 827 RML 829
            +L
Sbjct: 265 ELL 267

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 51.9 bits (124), Expect = 4e-07
 Identities = 59/231 (25%), Positives = 99/231 (42%), Gaps = 32/231 (13%)

Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL---HGCL---ENALDWA 657
           KE+ +L K+ + N++T  A    +   ++  EY   G L   +    G L   +  L W 
Sbjct: 48  KEVILLAKMKHPNIVTFFASFQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWF 107

Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL-KSLKEPQIGDIELCKVIDPSKST 716
                 V ++ GL  +H      IL  D+ ++NIFL K+    ++GD  + + ++   S 
Sbjct: 108 ------VQISLGLKHIH---DRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLN--DSM 156

Query: 717 GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNS 776
               T  G+  Y+ PE           +++S G +L EL T K    +GN L + VL+  
Sbjct: 157 ELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPF-EGNNLHQLVLKIC 215

Query: 777 AQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLR 827
                    +  N SR   ++ SQ+            VSP  RP + S+L+
Sbjct: 216 QGYF---APISPNFSRDLRSLISQLF----------KVSPRDRPSITSILK 253

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 51.9 bits (124), Expect = 5e-07
 Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 9/166 (5%)

Query: 597 GSHHKFD--KELEVLGKLSNSNVMT--PLAYVLASDSAYLFYEYAPKGTLFDVLHGCLEN 652
           G +H  D  KE+E+L  L + N++    +      +   L  E+ P G+L + L    +N
Sbjct: 46  GGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPRN-KN 104

Query: 653 ALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP 712
            ++   +   AV + +G+ +L    S   +  DL+ RN+ ++S  + +IGD  L K I+ 
Sbjct: 105 KINLKQQLKYAVQICKGMDYL---GSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIET 161

Query: 713 SKSTGSLSTVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
            K   ++     S V +  PE     +  +A +V+SFGV L ELLT
Sbjct: 162 DKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLT 207

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 51.7 bits (125), Expect = 5e-07
 Identities = 47/173 (27%), Positives = 72/173 (41%), Gaps = 33/173 (19%)

Query: 604 KELEVLGKLSNSNVMTPLAYV---LASDSAYLFYEYAPKGTLFDVLHGCL--------EN 652
            E+++L KL++ N+   + Y           +  EYA  G L   +            E 
Sbjct: 48  NEVKILKKLNHPNI---IKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQ 104

Query: 653 ALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP 712
            LDW       V +   L +LH   S  IL  D+  +NIFL S    ++GD  + KV+  
Sbjct: 105 ILDWF------VQLCLALKYLH---SRKILHRDIKPQNIFLTSNGLVKLGDFGISKVL-- 153

Query: 713 SKSTGSLSTVAGSVGYIPPE----YAYTMRVTMAGNVYSFGVILLELLTGKTA 761
           S +     TV G+  Y+ PE      Y  +     +++S G +L EL T K  
Sbjct: 154 SSTVDLAKTVVGTPYYLSPELCQNKPYNYKS----DIWSLGCVLYELCTLKHP 202

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 8/155 (5%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY 660
            F  E  V+  L + N++  L  VL  +  Y+  EY  KG+L D L       +  A + 
Sbjct: 46  AFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQL 105

Query: 661 SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLS 720
             A+ V +G+ +L        +  DL+ RN+ +      ++ D  L K     + +G L 
Sbjct: 106 GFALDVCEGMEYLE---EKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDSGKL- 161

Query: 721 TVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLEL 755
                V +  PE     + +   +V+SFG++L E+
Sbjct: 162 ----PVKWTAPEALREKKFSTKSDVWSFGILLWEI 192

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 51.8 bits (124), Expect = 5e-07
 Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 7/127 (5%)

Query: 632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNI 691
           L  EY P G+L D L    ++ L+ A     A  + +G+A+LH   S   +  DL+ RN+
Sbjct: 85  LIMEYVPLGSLRDYLP---KHKLNLAQLLLFAQQICEGMAYLH---SQHYIHRDLAARNV 138

Query: 692 FLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGS-VGYIPPEYAYTMRVTMAGNVYSFGV 750
            L + +  +IGD  L K +        +     S V +   E     + + A +V+SFGV
Sbjct: 139 LLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGV 198

Query: 751 ILLELLT 757
            L ELLT
Sbjct: 199 TLYELLT 205

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.3 bits (125), Expect = 6e-07
 Identities = 81/271 (29%), Positives = 123/271 (45%), Gaps = 13/271 (4%)

Query: 13  LNFSKNELVSLPTF-NGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLP 71
           L+ + N L S  +       L  LD  +NN+     L      +LK L+LS NK    LP
Sbjct: 98  LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLP 156

Query: 72  INLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVL 131
             L     L+ L LS N    ++PK +++  NL  +DLS N +S  +P  I  LS LE L
Sbjct: 157 SPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEEL 214

Query: 132 ILSANNLDGRLPTSLASITTLSRF--AANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIP 189
            LS N++   L +SL+++  LS    + N+ +      G ++  L  LDLS N++  +  
Sbjct: 215 DLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSN-LETLDLSNNQISSISS 272

Query: 190 IDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLE 249
           +  L+  NL+ +DLS N L  +LP      L+   L   LL  +  +        L    
Sbjct: 273 LGSLT--NLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLK--ALELKLNSILLNNN 328

Query: 250 LDNNSFTGMIPQQLGSCRSLTLLNLAQNELN 280
           + +N  T   P+ L    SL  L    N L+
Sbjct: 329 ILSNGETS-SPEALSILESLNNLWTLDNALD 358

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.9 bits (124), Expect = 7e-07
 Identities = 65/233 (27%), Positives = 114/233 (48%), Gaps = 10/233 (4%)

Query: 242 LEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLN 301
           L  LT L+LDNN+ T + P       +L  L+L+ N++  SLP  L +L  L+ ++L  N
Sbjct: 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFN 173

Query: 302 KLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITN 361
            LS ++P   S L  L+ +++S N +S  +P  +  L+ L  L+L  N++   + +S++N
Sbjct: 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSN 230

Query: 362 MRSLIELQLGGNQL--SGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNN 419
           +++L  L+L  N+L            L+  L+LS+N       ++   L  L  LDLS N
Sbjct: 231 LKNLSGLELSNNKLEDLPESIGNLSNLET-LDLSNNQIS--SISSLGSLTNLRELDLSGN 287

Query: 420 RFSGEIPQLLAQMPTLTQLLLTNNQLSGV-VPKFSKWVSVDTTGNLKLINVTA 471
             S  +P +   +  L  LL     L  + +   S  ++ +   N +  +  A
Sbjct: 288 SLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEA 340

Length = 394

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 51.7 bits (124), Expect = 7e-07
 Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 12/158 (7%)

Query: 605 ELEVLGKLSNS-NVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           EL+++  L N  N++  L          +  EY   G L + L    E+ L      S +
Sbjct: 88  ELKIMSHLGNHENIVNLLGACTIGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFS 147

Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             VA+G+AFL    S   +  DL+ RN+ L   K  +I D  L + I       S   V 
Sbjct: 148 YQVAKGMAFL---ASKNCIHRDLAARNVLLTHGKIVKICDFGLARDI----MNDSNYVVK 200

Query: 724 GS----VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
           G+    V ++ PE  +    T   +V+S+G++L E+ +
Sbjct: 201 GNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFS 238

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 51.2 bits (123), Expect = 7e-07
 Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 11/160 (6%)

Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYS 661
           F KE  ++  L + N++     VL +    +  E AP G+L D L          ++   
Sbjct: 43  FLKEAAIMHSLDHENLIRLYGVVL-THPLMMVTELAPLGSLLDRLRKDALGHFLISTLCD 101

Query: 662 IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI----DPSKSTG 717
            AV +A G+ +L    S   +  DL+ RNI L S  + +IGD  L + +    D      
Sbjct: 102 YAVQIANGMRYLE---SKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEE 158

Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
            L        +  PE   T   + A +V+ FGV L E+ T
Sbjct: 159 HLKV---PFAWCAPESLRTRTFSHASDVWMFGVTLWEMFT 195

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 51.0 bits (123), Expect = 9e-07
 Identities = 58/225 (25%), Positives = 84/225 (37%), Gaps = 36/225 (16%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           FST   A    +   Y IK L+   ++ +         E EVL +L+    +  L Y   
Sbjct: 14  FSTVVLAKEKETNKEYAIKILDKR-QLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQ 72

Query: 627 SDSA-YLFYEYAPKGTLFDVLH--GCLENALDWASRYSIAVGVAQ---GLAFLHGFTSNP 680
            +   Y   EYAP G L   +   G L         Y      A+    L +LH   S  
Sbjct: 73  DEENLYFVLEYAPNGELLQYIRKYGSL--DEKCTRFY-----AAEILLALEYLH---SKG 122

Query: 681 ILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGS--------------- 725
           I+  DL   NI L      +I D    KV+DP+ S  S    A +               
Sbjct: 123 IIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASF 182

Query: 726 VG---YIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767
           VG   Y+ PE         + ++++ G I+ ++LTGK      NE
Sbjct: 183 VGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNE 227

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 4/156 (2%)

Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYS 661
           F  E +++ KL +  ++   A     +  Y+  E    G+L + L G    AL       
Sbjct: 48  FLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLID 107

Query: 662 IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST 721
           +A  VA G+A+L    +   +  DL+ RN+ +      ++ D  L +VI           
Sbjct: 108 MAAQVASGMAYLE---AQNYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGA 164

Query: 722 VAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
               + +  PE A   R ++  +V+SFG++L E++T
Sbjct: 165 -KFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVT 199

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 50.4 bits (120), Expect = 2e-06
 Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 13/140 (9%)

Query: 632 LFY--EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTR 689
           LF+  EY   G L   +  C +  L  A+ Y  A  +  GL FLH   S  I+  DL   
Sbjct: 71  LFFVMEYLNGGDLMFHIQSCHKFDLPRATFY--AAEIICGLQFLH---SKGIVYRDLKLD 125

Query: 690 NIFLKSLKEPQIGDIELCK--VIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYS 747
           NI L +    +I D  +CK  ++  +K+     T  G+  YI PE     +   + + +S
Sbjct: 126 NILLDTDGHIKIADFGMCKENMLGDAKT----CTFCGTPDYIAPEILLGQKYNTSVDWWS 181

Query: 748 FGVILLELLTGKTAVNQGNE 767
           FGV+L E+L G++  +  +E
Sbjct: 182 FGVLLYEMLIGQSPFHGHDE 201

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 42/187 (22%), Positives = 78/187 (41%), Gaps = 17/187 (9%)

Query: 577 PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY-- 634
               ++ +K +     I + G       E E+L + ++  ++         D  Y++   
Sbjct: 16  SKNRTFALKCVK-KRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTF--KDKKYIYMLM 72

Query: 635 EYAPKGTLFDVLH--GCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIF 692
           EY   G L+ +L   G  +   ++ +R+ IA  V     +LH   +  I+  DL   N+ 
Sbjct: 73  EYCLGGELWTILRDRGLFD---EYTARFYIA-CVVLAFEYLH---NRGIIYRDLKPENLL 125

Query: 693 LKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVIL 752
           L S    ++ D    K +   + T    T  G+  Y+ PE         + + +S G++L
Sbjct: 126 LDSNGYVKLVDFGFAKKLKSGQKT---WTFCGTPEYVAPEIILNKGYDFSVDYWSLGILL 182

Query: 753 LELLTGK 759
            ELLTG+
Sbjct: 183 YELLTGR 189

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 48/202 (23%), Positives = 91/202 (45%), Gaps = 28/202 (13%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           F   YK + + +G    IK+++      +  +     +E+++L  L + N++  +  +  
Sbjct: 13  FGVVYKGLNLETGDFVAIKQISLEKIKEE--ALKSIMQEIDLLKNLKHPNIVKYIGSIET 70

Query: 627 SDSAYLFYEYAPKGTLFDVL--HGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLL 684
           SDS Y+  EYA  G+L  ++   G    +L   + Y     V QGLA+LH      ++  
Sbjct: 71  SDSLYIILEYAENGSLRQIIKKFGPFPESL--VAVY--VYQVLQGLAYLHE---QGVIHR 123

Query: 685 DLSTRNIFLKSLKEPQIGDIELCKVID------PSKSTGSLSTVAGSVGYIPPEYAYTMR 738
           D+   NI     K+       + K+ D       +  +   ++V G+  ++ PE    M 
Sbjct: 124 DIKAANILTT--KD------GVVKLADFGVATKLNDVSKDDASVVGTPYWMAPE-VIEMS 174

Query: 739 -VTMAGNVYSFGVILLELLTGK 759
             + A +++S G  ++ELLTG 
Sbjct: 175 GASTASDIWSLGCTVIELLTGN 196

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.2 bits (120), Expect = 4e-06
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 389 ALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGV 448
            L L +    G IP   ++L  L+ ++LS N   G IP  L  + +L  L L+ N  +G 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 449 VP 450
           +P
Sbjct: 482 IP 483

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 77/305 (25%), Positives = 107/305 (35%), Gaps = 50/305 (16%)

Query: 194 SHPNLQTIDLSVNML-EGSLPQNMS-----PNLVRLRLGTNLLIGEIPSAT------FTS 241
               LQ + L  N L E +     S     P+L  L L  N   G IP          T 
Sbjct: 21  KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET-GRIPRGLQSLLQGLTK 79

Query: 242 LEKLTYLELDNNSFTGMIPQQLGSCR---SLTLLNLAQNELNGS-LPIQLGSLGILQ--- 294
              L  L+L +N+        L S     SL  L L  N L    L +    L  L    
Sbjct: 80  GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPAL 139

Query: 295 -VMNLQLNKLSGE----IPSQFSQLKLLSTMNISWNSLSGS-IPSF---LSNLTNLVNLN 345
             + L  N+L G     +       + L  +N++ N +  + I +    L    NL  L+
Sbjct: 140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLD 199

Query: 346 LRQNNLN--GSIPNSIT--NMRSLIELQLGGNQLSGT--------IPMMPPRLQIALNLS 393
           L  N L   G+   + T  +++SL  L LG N L+          +      L   L+LS
Sbjct: 200 LNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLL-TLSLS 258

Query: 394 SNLFEGPIPTTFARL----NGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVV 449
            N          A +      L  LDL  N+F  E  QLLA+    + L   N   S  V
Sbjct: 259 CNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE----SLLEPGNELESLWV 314

Query: 450 PKFSK 454
              S 
Sbjct: 315 KDDSF 319

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 49.2 bits (117), Expect = 4e-06
 Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 35/181 (19%)

Query: 599 HHKFDKELEVLGKLS-NSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL----------- 646
           H  F  ELEVL KL  + N++  L         Y+  EYAP G L D L           
Sbjct: 46  HRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPA 105

Query: 647 ----HGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIG 702
               HG   + L        A  VA G+ +L   +    +  DL+ RN+         +G
Sbjct: 106 FAKEHGT-ASTLTSQQLLQFASDVATGMQYL---SEKQFIHRDLAARNVL--------VG 153

Query: 703 DIELCKVIDPSKSTGSLSTVAGSVGYIPPEYA------YTMRVTMAGNVYSFGVILLELL 756
           +    K+ D   S G    V  ++G +P  +       Y++  T + +V+SFGV+L E++
Sbjct: 154 ENLASKIADFGLSRGEEVYVKKTMGRLPVRWMAIESLNYSVYTTKS-DVWSFGVLLWEIV 212

Query: 757 T 757
           +
Sbjct: 213 S 213

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.4 bits (118), Expect = 6e-06
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 10  LKLLNFSKNEL--VSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFN 67
           L+ +N S N +     P+      LEVLD S N+ NG+I     +L SL+ LNL+ N  +
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 68  GFLPINLG 75
           G +P  LG
Sbjct: 504 GRVPAALG 511

Length = 623

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 40/162 (24%), Positives = 79/162 (48%), Gaps = 13/162 (8%)

Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL--HGCLENALDWASRYS 661
           +E+ +L +L + N++  L   L +D   +F EY P G++  +L  +G  E  L      +
Sbjct: 55  REIALLKELQHENIVQYLGSSLDADHLNIFLEYVPGGSVAALLNNYGAFEETL----VRN 110

Query: 662 IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST 721
               + +GL +LH   +  I+  D+   NI + +    +I D  + K ++ +  +   + 
Sbjct: 111 FVRQILKGLNYLH---NRGIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNG 167

Query: 722 ----VAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
               + GSV ++ PE       T   +++S G +++E+LTGK
Sbjct: 168 ARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGK 209

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 48.6 bits (116), Expect = 7e-06
 Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 9/132 (6%)

Query: 631 YLFY--EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLST 688
           +LF+  EY   G L   +          A  Y  A  +  GL FLH      I+  DL  
Sbjct: 70  HLFFVMEYLNGGDLMFHIQSSGRFDEARARFY--AAEIICGLQFLH---KKGIIYRDLKL 124

Query: 689 RNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSF 748
            N+ L      +I D  +CK  +     G  ST  G+  YI PE     +   + + +SF
Sbjct: 125 DNVLLDKDGHIKIADFGMCK--ENMNGEGKASTFCGTPDYIAPEILKGQKYNESVDWWSF 182

Query: 749 GVILLELLTGKT 760
           GV+L E+L G++
Sbjct: 183 GVLLYEMLIGQS 194

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 47.9 bits (114), Expect = 8e-06
 Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 10/158 (6%)

Query: 605 ELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL--HGCLENALDWASRYSI 662
           E+++L  L +  ++     +   ++  +F EY P G++ D L  +G L   +    +Y+ 
Sbjct: 54  EIQLLKNLQHERIVQYYGCLRDDETLSIFMEYMPGGSVKDQLKAYGALTETV--TRKYTR 111

Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP-SKSTGSLST 721
              + +G+ +LH   SN I+  D+   NI   S    ++GD    K +     S   + +
Sbjct: 112 Q--ILEGVEYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKS 166

Query: 722 VAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
           V G+  ++ PE           +V+S G  ++E+LT K
Sbjct: 167 VTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEK 204

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 52/234 (22%), Positives = 97/234 (41%), Gaps = 22/234 (9%)

Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E +V+ KLS+  ++             L +E+   G L D L           
Sbjct: 42  SEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFMEHGCLSDYLRA-QRGKFSQE 100

Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
           +   + + V +G+A+L    S+ ++  DL+ RN  +   +  ++ D  + + +   + T 
Sbjct: 101 TLLGMCLDVCEGMAYLE---SSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTS 157

Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNS 776
           S  T    V +  PE     + +   +V+SFGV++ E+ + GKT              N 
Sbjct: 158 STGT-KFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYE-----------NR 205

Query: 777 AQQDKLDHI-LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
           +  + ++ I   F + +  LA +S    V ++   C    PE RP    +L  L
Sbjct: 206 SNSEVVETINAGFRLYKPRLASQS----VYELMQHCWKERPEDRPSFSLLLHQL 255

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 13/164 (7%)

Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL-------HGCLENAL 654
           F +EL++  KLS+ NV+  L     ++  Y+  EY   G L   L              L
Sbjct: 55  FRRELDMFRKLSHKNVVRLLGLCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPL 114

Query: 655 DWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP-S 713
               + ++   +A G+  L   ++   +  DL+ RN  + S +E ++  + L K  D  +
Sbjct: 115 STKQKVALCTQIALGMDHL---SNARFVHRDLAARNCLVSSQREVKVSLLSLSK--DVYN 169

Query: 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                L      + ++ PE       +   +V+SFGV++ E+ T
Sbjct: 170 SEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFT 213

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 34/256 (13%)

Query: 579 GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYA 637
           G  Y IKKLN  +   +       ++E ++L +L + N++         D   Y+   + 
Sbjct: 25  GKQYVIKKLNLRNASRR--ERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMGFC 82

Query: 638 PKGTLFDVLHG-----CLEN-ALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNI 691
             G L+  L         EN  ++W       V +A  L +LH      IL  DL T+N+
Sbjct: 83  EGGDLYHKLKEQKGKLLPENQVVEWF------VQIAMALQYLH---EKHILHRDLKTQNV 133

Query: 692 FLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVI 751
           FL      ++GD+ + +V++        ST+ G+  Y+ PE           +V++ G  
Sbjct: 134 FLTRTNIIKVGDLGIARVLENQCDMA--STLIGTPYYMSPELFSNKPYNYKSDVWALGCC 191

Query: 752 LLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVAC 811
           + E+ T K A N   ++   V R          I++  +         ++  ++      
Sbjct: 192 VYEMATLKHAFN-AKDMNSLVYR----------IIEGKLPPMPKDYSPELGELIA---TM 237

Query: 812 VSVSPEARPKMKSVLR 827
           +S  PE RP +KS+LR
Sbjct: 238 LSKRPEKRPSVKSILR 253

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 51/180 (28%), Positives = 79/180 (43%), Gaps = 33/180 (18%)

Query: 599 HHKFDKELEVLGKLS-NSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHG--CLENALD 655
           H  F  ELEVL KL  + N++  L         YL  EYAP G L D L     LE    
Sbjct: 51  HRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPA 110

Query: 656 WASRYSIA------------VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGD 703
           +A   S A              VA+G+ +L   +    +  DL+ RNI         +G+
Sbjct: 111 FAIANSTASTLSSQQLLHFAADVARGMDYL---SQKQFIHRDLAARNIL--------VGE 159

Query: 704 IELCKVIDPSKSTGSLSTVAGSVGYIPPEYA------YTMRVTMAGNVYSFGVILLELLT 757
             + K+ D   S G    V  ++G +P  +       Y++  T + +V+S+GV+L E+++
Sbjct: 160 NYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNS-DVWSYGVLLWEIVS 218

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 10/159 (6%)

Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYS 661
           F +E +++ KL +  ++   A     +  Y+  EY  KG+L D L       L       
Sbjct: 48  FLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVD 107

Query: 662 IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST 721
           +A  +A+G+A+L    S   +  DL+ RNI +      +I D  L ++I+  + T     
Sbjct: 108 MAAQIAEGMAYLE---SRNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTAR--- 161

Query: 722 VAGS---VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
             G+   + +  PE A   R T+  +V+SFG++L E++T
Sbjct: 162 -EGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVT 199

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 17/176 (9%)

Query: 596 LGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENAL- 654
           L +   F +E E+L  L + +++         D   + +EY   G L   L     +A+ 
Sbjct: 48  LAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMI 107

Query: 655 --DWASRYS-----------IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQI 701
             D   R +           IA  +A G+ +L    S   +  DL+TRN  + +    +I
Sbjct: 108 LVDGQPRQAKGELGLSQMLHIASQIASGMVYL---ASQHFVHRDLATRNCLVGANLLVKI 164

Query: 702 GDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
           GD  + + +  +            + ++PPE     + T   +V+SFGVIL E+ T
Sbjct: 165 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFT 220

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 47.5 bits (113), Expect = 3e-05
 Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 27/195 (13%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF--YEYAPKGTLFDVLHGCLENALDWAS 658
           +F +E  +  +L + N++  L    A     LF  +EY P  TL +VL    + AL    
Sbjct: 24  RFRRETALCARLYHPNIVALLDSGEAPPG-LLFAVFEYVPGRTLREVLAA--DGALPAGE 80

Query: 659 RYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID------- 711
              + + V   LA  H   +  I+  DL  +NI +      Q G     KV+D       
Sbjct: 81  TGRLMLQVLDALACAH---NQGIVHRDLKPQNIMVS-----QTGVRPHAKVLDFGIGTLL 132

Query: 712 -----PSKSTGSLST-VAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQG 765
                   +T + +T V G+  Y  PE      VT   ++Y++G+I LE LTG+  V QG
Sbjct: 133 PGVRDADVATLTRTTEVLGTPTYCAPEQLRGEPVTPNSDLYAWGLIFLECLTGQRVV-QG 191

Query: 766 NELAKWVLRNSAQQD 780
             +A+ + +  +  D
Sbjct: 192 ASVAEILYQQLSPVD 206

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 4/160 (2%)

Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E  ++  L +  ++   A V   +  Y+  EY  KG+L D L       +   
Sbjct: 44  SVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYMAKGSLLDFLKSDEGGKVLLP 103

Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
                +  +A+G+A++        +  DL   N+ +      +I D  L +VI+ ++ T 
Sbjct: 104 KLIDFSAQIAEGMAYIE---RKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTA 160

Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   + +  PE       T+  +V+SFG++L E++T
Sbjct: 161 R-EGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVT 199

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 45.7 bits (108), Expect = 5e-05
 Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 9/156 (5%)

Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYS 661
           F +E  V+ KL + N +  L  V+  +  Y+  E   KG L + L       +       
Sbjct: 46  FLEETAVMTKLHHKN-LVRLLGVILHNGLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQ 104

Query: 662 IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST 721
            ++ VA+G+ +L    S  ++  DL+ RNI +      ++ D  L +V         L  
Sbjct: 105 FSLDVAEGMEYLE---SKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNSKLP- 160

Query: 722 VAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
               V +  PE     + +   +V+S+GV+L E+ +
Sbjct: 161 ----VKWTAPEALKHKKFSSKSDVWSYGVLLWEVFS 192

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 26/60 (43%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 9  GLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKF 66
           LK L+ S N L  +P   F G   L+VLD S NNL       F  L SL+SL+LS N  
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.0 bits (97), Expect = 6e-05
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 219 NLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNE 278
           NL  L L  N L   IP   F  L  L  L+L  N+ T + P+      SL  L+L+ N 
Sbjct: 1   NLKSLDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 279 L 279
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 7/98 (7%)

Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV-IDPSKSTGSLST 721
           A  +A GL FLH   S  I+  DL   N+ L +    +I D  +CK  I   K+T    T
Sbjct: 107 AAEIAIGLFFLH---SKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGKTT---RT 160

Query: 722 VAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
             G+  YI PE         + + ++FGV+L E+L G+
Sbjct: 161 FCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQ 198

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 45.3 bits (107), Expect = 6e-05
 Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 15/162 (9%)

Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYS 661
           F  E  ++G+ S+ N++     V     A +  EY   G L   L    ++  +++S   
Sbjct: 53  FLSEASIMGQFSHHNIIRLEGVVTKFKPAMIITEYMENGALDKYLR---DHDGEFSSYQL 109

Query: 662 IAV--GVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI--DPSKSTG 717
           + +  G+A G+ +L        +  DL+ RNI + S  E ++ D  L +V+  DP    G
Sbjct: 110 VGMLRGIAAGMKYLSDMN---YVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPE---G 163

Query: 718 SLSTVAGSVG--YIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
           + +T  G +   +  PE     + T A +V+SFG+++ E+++
Sbjct: 164 TYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMS 205

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 45.2 bits (107), Expect = 7e-05
 Identities = 57/242 (23%), Positives = 97/242 (40%), Gaps = 38/242 (15%)

Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E +V+ KLS+  ++            Y+  E+          +GCL N L   
Sbjct: 42  SEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFME--------NGCLLNYL--R 91

Query: 658 SRY---------SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK 708
            R          S+   V +G+ +L     N  +  DL+ RN  + S    ++ D  + +
Sbjct: 92  QRQGKLSKDMLLSMCQDVCEGMEYLE---RNSFIHRDLAARNCLVSSTGVVKVSDFGMTR 148

Query: 709 VIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNE 767
            +   + T S S     V + PPE     + +   +V+SFGV++ E+ T GK    + + 
Sbjct: 149 YVLDDEYTSS-SGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSN 207

Query: 768 LAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLR 827
               V+   ++  +L         R  LA      TV +V  +C    PE RP    +LR
Sbjct: 208 YE--VVEMISRGFRL--------YRPKLASM----TVYEVMYSCWHEKPEGRPTFAELLR 253

Query: 828 ML 829
            +
Sbjct: 254 AI 255

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 10/142 (7%)

Query: 621 LAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNP 680
             Y+++ DS +L  ++A  G L+  +   L    +   R++  + VA  L  LH      
Sbjct: 51  HKYIVSEDSVFLVLQHAEGGKLWSHISKFLNIPEECVKRWAAEMVVA--LDALH---REG 105

Query: 681 ILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVT 740
           I+  DL+  NI L        G I+L      S+   S    A    Y  PE       T
Sbjct: 106 IVCRDLNPNNILLD-----DRGHIQLTYFSRWSEVEDSCDGEAVENMYCAPEVGGISEET 160

Query: 741 MAGNVYSFGVILLELLTGKTAV 762
            A + +S G IL ELLTGKT V
Sbjct: 161 EACDWWSLGAILFELLTGKTLV 182

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. RPK118 also binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118 may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Length = 237

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 45.5 bits (108), Expect = 8e-05
 Identities = 44/200 (22%), Positives = 77/200 (38%), Gaps = 39/200 (19%)

Query: 592 KIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLE 651
            +   G H    +EL+++ ++ + N+M  +          ++ E      + D++   L+
Sbjct: 57  LVGMCGIHFTTLRELKIMNEIKHENIMGLVD---------VYVEGDFINLVMDIMASDLK 107

Query: 652 NALDWASRYS------IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIE 705
             +D   R +      I + +  GL  LH +     +  DLS  NIF+ S    +I D  
Sbjct: 108 KVVDRKIRLTESQVKCILLQILNGLNVLHKWY---FMHRDLSPANIFINSKGICKIADFG 164

Query: 706 LCK--VIDP----------SKSTGSLSTVAGSVGYIPPEY-----AYTMRVTMAGNVYSF 748
           L +     P           +    +++   ++ Y  PE       Y   V M    +S 
Sbjct: 165 LARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDM----WSV 220

Query: 749 GVILLELLTGKTAVNQGNEL 768
           G I  ELLTGK      NE+
Sbjct: 221 GCIFAELLTGKPLFPGENEI 240

Length = 335

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 45.0 bits (106), Expect = 8e-05
 Identities = 50/226 (22%), Positives = 93/226 (41%), Gaps = 28/226 (12%)

Query: 612 LSNSNVMTPLAY--------VLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           L+ +NVM  L +        V+  +  Y+  E+  KG+L D L     +          +
Sbjct: 49  LAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFS 108

Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +A+G+AF+        +  DL   NI + +    +I D  L +VI+ ++ T       
Sbjct: 109 AQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAR-EGAK 164

Query: 724 GSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLD 783
             + +  PE       T+  +V+SFG++L+E++T       G    + V+R       L+
Sbjct: 165 FPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPE-VIRA------LE 217

Query: 784 HILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPK---MKSVL 826
               + + R      +    +  + + C    PE RP    ++SVL
Sbjct: 218 R--GYRMPRPE----NCPEELYNIMMRCWKNRPEERPTFEYIQSVL 257

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 9e-05
 Identities = 20/56 (35%), Positives = 29/56 (51%)

Query: 390 LNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQL 445
           L+LS+N         F  L  L+VLDLS N  +   P+  + +P+L  L L+ N L
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 44.7 bits (105), Expect = 9e-05
 Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 35/181 (19%)

Query: 599 HHKFDKELEVLGKLSN-SNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL----------- 646
           H  F  ELEVL KL +  N++  L         YL  EYAP G L D L           
Sbjct: 39  HRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPA 98

Query: 647 ----HGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIG 702
               +    + L        A  VA+G+ +L   +    +  DL+ RNI         +G
Sbjct: 99  FAIANST-ASTLSSQQLLHFAADVARGMDYL---SQKQFIHRDLAARNIL--------VG 146

Query: 703 DIELCKVIDPSKSTGSLSTVAGSVGYIPPEYA------YTMRVTMAGNVYSFGVILLELL 756
           +  + K+ D   S G    V  ++G +P  +       Y++  T + +V+S+GV+L E++
Sbjct: 147 ENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNS-DVWSYGVLLWEIV 205

Query: 757 T 757
           +
Sbjct: 206 S 206

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 35/162 (21%), Positives = 70/162 (43%), Gaps = 12/162 (7%)

Query: 600 HKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
            +F KE  V+ ++ + N++  L         Y+  E+   G L D L  C    ++    
Sbjct: 47  EEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVL 106

Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
             +A  ++  + +L        +  DL+ RN  +      ++ D  L +++     TG  
Sbjct: 107 LYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLM-----TGDT 158

Query: 720 STV-AGS---VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
            T  AG+   + +  PE     + ++  +V++FGV+L E+ T
Sbjct: 159 YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 200

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 58/252 (23%), Positives = 93/252 (36%), Gaps = 49/252 (19%)

Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL-----------HGCL 650
           F +E E+L  L + +++      +  D   + +EY   G L   L            G  
Sbjct: 54  FHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNR 113

Query: 651 ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI 710
              L  +    IA  +A G+ +L    S   +  DL+TRN          +G+  L K+ 
Sbjct: 114 PAELTQSQMLHIAQQIAAGMVYL---ASQHFVHRDLATRNCL--------VGENLLVKIG 162

Query: 711 DPSKSTGSLSTVAGSVG--------YIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTA 761
           D   S    ST    VG        ++PPE     + T   +V+S GV+L E+ T GK  
Sbjct: 163 DFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQP 222

Query: 762 VNQ--GNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEAR 819
             Q   NE+ + + +    Q                  R+    V  + + C    P  R
Sbjct: 223 WYQLSNNEVIECITQGRVLQRP----------------RTCPKEVYDLMLGCWQREPHMR 266

Query: 820 PKMKSVLRMLLN 831
             +K +  +L N
Sbjct: 267 LNIKEIHSLLQN 278

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV-IDPSKSTGSLST 721
           A  +  GL FLH      I+  DL   N+ L S    +I D  +CK  I    +T   ST
Sbjct: 102 AAEIVLGLQFLH---ERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVTT---ST 155

Query: 722 VAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
             G+  YI PE         A + ++ GV+L E+L G+
Sbjct: 156 FCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQ 193

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 7/94 (7%)

Query: 666 VAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK-VIDPSKSTGSLSTVAG 724
           +A  L  LH      I+  DL   NI L      ++ D  L K  ID  K   S     G
Sbjct: 107 LALALDHLHSLG---IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSF---CG 160

Query: 725 SVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTG 758
           +V Y+ PE       T + + +SFGV++ E+LTG
Sbjct: 161 TVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTG 194

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 22/165 (13%)

Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL--HGCLENALDWASR 659
           F  E  ++G+  + N++     V  S    +  EY   G+L   L  +   +        
Sbjct: 52  FLTEASIMGQFDHPNIIRLEGVVTKSRPVMIITEYMENGSLDKFLREN---DGKFTVGQL 108

Query: 660 YSIAVGVAQGLAFL--HGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
             +  G+A G+ +L    +     +  DL+ RNI + S    ++ D  L + ++ S++T 
Sbjct: 109 VGMLRGIASGMKYLSEMNY-----VHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEAT- 162

Query: 718 SLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
              T  G  G IP     PE     + T A +V+SFG+++ E+++
Sbjct: 163 --YTTKG--GKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMS 203

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 12/107 (11%)

Query: 668 QGLAFLHGFTSNPILLLDLSTRNIFLKS----LKEPQIGDIELCKVIDPSKS-TGSLSTV 722
           +GL ++H   S  +L  DL   N+F+ +    LK   IGD  L +++DP  S  G LS  
Sbjct: 125 RGLKYIH---SANVLHRDLKPANVFINTEDLVLK---IGDFGLARIVDPHYSHKGYLSEG 178

Query: 723 AGSVGYIPPEYAYTMR-VTMAGNVYSFGVILLELLTGKTAVNQGNEL 768
             +  Y  P    +    T A ++++ G I  E+LTGK      +EL
Sbjct: 179 LVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHEL 225

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 24/215 (11%)

Query: 569 STYYKAVMPSGMSYFIKKLN--WSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           S   + V    MSY  K+ N  W D I          KE++ L +L + N +      L 
Sbjct: 43  SHTNEVVAVKKMSYSGKQTNEKWQDII----------KEVKFLQQLKHPNTIEYKGCYLK 92

Query: 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL 686
             +A+L  EY   G+  D+L    +  L      +I  G  QGLA+LH   S+ ++  D+
Sbjct: 93  EHTAWLVMEYC-LGSASDLLE-VHKKPLQEVEIAAITHGALQGLAYLH---SHNMIHRDI 147

Query: 687 STRNIFLKSLKEPQIGDIELCKVIDPSKS-TGSLSTVAGSVGYIPPEYAYTMRVTMAGNV 745
              NI L    + ++ D        P+ S  G+   +A  V     E  Y  +V    +V
Sbjct: 148 KAGNILLTEPGQVKLADFGSASKSSPANSFVGTPYWMAPEVILAMDEGQYDGKV----DV 203

Query: 746 YSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD 780
           +S G+  +EL   K  +   N ++   L + AQ D
Sbjct: 204 WSLGITCIELAERKPPLFNMNAMS--ALYHIAQND 236

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 48/197 (24%), Positives = 90/197 (45%), Gaps = 17/197 (8%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKEL----EVLGKLSNSNVMTPLA 622
           F T YK + +P G +    K+  + K+ +  +  K +KE+     V+  + +  V   L 
Sbjct: 20  FGTVYKGIWIPDGENV---KIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLG 76

Query: 623 YVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY--SIAVGVAQGLAFLHGFTSNP 680
             L S +  L  +  P G L D +    EN     S+   +  V +A+G+++L       
Sbjct: 77  ICLTS-TVQLVTQLMPYGCLLDYVR---ENKDRIGSQDLLNWCVQIAKGMSYLEEVR--- 129

Query: 681 ILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVT 740
           ++  DL+ RN+ +KS    +I D  L +++D  ++          + ++  E     R T
Sbjct: 130 LVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILHRRFT 189

Query: 741 MAGNVYSFGVILLELLT 757
              +V+S+GV + EL+T
Sbjct: 190 HQSDVWSYGVTVWELMT 206

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 43.5 bits (102), Expect = 3e-04
 Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 29/171 (16%)

Query: 606 LEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA-------- 657
           ++++GK  + N++  L         Y+  EYA KG L + L       +D++        
Sbjct: 71  MKMIGK--HKNIINLLGACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPE 128

Query: 658 ------SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK--- 708
                    S A  VA+G+ +L    S   +  DL+ RN+ +      +I D  L +   
Sbjct: 129 EQLTFKDLVSCAYQVARGMEYL---ASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVH 185

Query: 709 VIDPSKST--GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
            ID  K T  G L      V ++ PE  +    T   +V+SFGV+L E+ T
Sbjct: 186 NIDYYKKTTNGRLP-----VKWMAPEALFDRVYTHQSDVWSFGVLLWEIFT 231

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 49/179 (27%), Positives = 77/179 (43%), Gaps = 22/179 (12%)

Query: 580 MSYFIKKLN--WSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYA 637
           MSY  K+ N  W D I          KE+  L KL + N +      L   +A+L  EY 
Sbjct: 48  MSYSGKQSNEKWQDII----------KEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYC 97

Query: 638 PKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK 697
             G+  D+L    +  L      ++  G  QGLA+LH   S+ ++  D+   NI L    
Sbjct: 98  -LGSASDLLE-VHKKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPG 152

Query: 698 EPQIGDIELCKVIDPSKS-TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLEL 755
             ++GD     ++ P+    G+   +A  V     E  Y  +V    +V+S G+  +EL
Sbjct: 153 LVKLGDFGSASIMAPANXFVGTPYWMAPEVILAMDEGQYDGKV----DVWSLGITCIEL 207

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 36/159 (22%), Positives = 68/159 (42%), Gaps = 12/159 (7%)

Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           +E+++L +L++ N++  L         YL +E+     L+ ++    +  L  +   S  
Sbjct: 47  REIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFM-DTDLYKLIKD-RQRGLPESLIKSYL 104

Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS--TGSLST 721
             + QGLAF H   S+ IL  DL   N+ + +    ++ D  L +         T  + T
Sbjct: 105 YQLLQGLAFCH---SHGILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVT 161

Query: 722 VAGSVGYIPPEYAYTMRV-TMAGNVYSFGVILLELLTGK 759
                 Y  PE     +  +   +++S G I  ELL+ +
Sbjct: 162 RW----YRAPELLLGDKGYSTPVDIWSVGCIFAELLSRR 196

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 29/203 (14%)

Query: 568 FSTYYKAV-MPSGMS----YFIKKL-NWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPL 621
           F T +K + +P G S      IK + + S +     +  +    +  +G L ++ ++  L
Sbjct: 20  FGTVHKGIWIPEGDSIKIPVAIKTIQDRSGR----QTFQEITDHMLAMGSLDHAYIVRLL 75

Query: 622 AYVLASDSAYLFYEYAPKGTLFDVLH---GCL--ENALDWASRYSIAVGVAQGLAFL--H 674
             +    S  L  + +P G+L D +      L  +  L+W       V +A+G+ +L  H
Sbjct: 76  G-ICPGASLQLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWC------VQIAKGMYYLEEH 128

Query: 675 GFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYA 734
                     +L+ RNI LKS    QI D  +  ++ P       S     + ++  E  
Sbjct: 129 RMVHR-----NLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESI 183

Query: 735 YTMRVTMAGNVYSFGVILLELLT 757
              R T   +V+S+GV + E+++
Sbjct: 184 LFGRYTHQSDVWSYGVTVWEMMS 206

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional

 Score = 43.1 bits (101), Expect = 5e-04
 Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 1/132 (0%)

Query: 626 ASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLD 685
           + D   L  EY   G L   +   L+  L +   Y + +   Q +  L    S  ++  D
Sbjct: 136 SDDKLLLIMEYGSGGDLNKQIKQRLKEHLPF-QEYEVGLLFYQIVLALDEVHSRKMMHRD 194

Query: 686 LSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNV 745
           L + NIFL      ++GD    K    S S    S+  G+  Y+ PE     R +   ++
Sbjct: 195 LKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWERKRYSKKADM 254

Query: 746 YSFGVILLELLT 757
           +S GVIL ELLT
Sbjct: 255 WSLGVILYELLT 266

Length = 478

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 42.4 bits (99), Expect = 6e-04
 Identities = 46/200 (23%), Positives = 90/200 (45%), Gaps = 23/200 (11%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHK----FDKELEVLGKLSNSNVMTPLA 622
           F T YK + +P G +    K+  + KI    +  K    F  E  ++  + + +++  L 
Sbjct: 20  FGTVYKGIWVPEGETV---KIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLG 76

Query: 623 YVLASDSAYLFYEYAPKGTLFDVLHGCLENA-----LDWASRYSIAVGVAQGLAFLHGFT 677
             L S +  L  +  P G L D +H   +N      L+W       V +A+G+ +L    
Sbjct: 77  VCL-SPTIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWC------VQIAKGMMYLE--- 126

Query: 678 SNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTM 737
              ++  DL+ RN+ +KS    +I D  L ++++  +   +       + ++  E  +  
Sbjct: 127 ERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYR 186

Query: 738 RVTMAGNVYSFGVILLELLT 757
           + T   +V+S+GV + EL+T
Sbjct: 187 KFTHQSDVWSYGVTIWELMT 206

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 42.3 bits (99), Expect = 6e-04
 Identities = 46/195 (23%), Positives = 76/195 (38%), Gaps = 29/195 (14%)

Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL--HG----CLENALD 655
           F +E E+L  L + +++             + +EY   G L   L  HG     L    D
Sbjct: 54  FQREAELLTVLQHQHIVRFYGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGED 113

Query: 656 WA-------SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK 708
            A          +IA  +A G+ +L        +  DL+TRN  +      +IGD  + +
Sbjct: 114 VAPGQLTLGQMLAIASQIASGMVYLASLH---FVHRDLATRNCLVGQGLVVKIGDFGMSR 170

Query: 709 VIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKT------- 760
            I  +            + ++PPE     + T   +++SFGV+L E+ T GK        
Sbjct: 171 DIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSN 230

Query: 761 -----AVNQGNELAK 770
                 + QG EL +
Sbjct: 231 TEAIECITQGRELER 245

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 42.3 bits (99), Expect = 6e-04
 Identities = 52/192 (27%), Positives = 79/192 (41%), Gaps = 11/192 (5%)

Query: 575 VMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS-DSAYLF 633
           V  +G  Y  KKL    +I +         E ++L K+ NS  +  LAY   + D+  L 
Sbjct: 21  VRATGKMYACKKLE-KKRIKKRKGESMALNEKQILEKV-NSRFVVSLAYAYETKDALCLV 78

Query: 634 YEYAPKGTL-FDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIF 692
                 G L F + H   E   +       A  +  GL  LH      I+  DL   NI 
Sbjct: 79  LTLMNGGDLKFHIYH-MGEAGFEEGRAVFYAAEICCGLEDLH---QERIVYRDLKPENIL 134

Query: 693 LKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVIL 752
           L      +I D+ L  V  P   T  +    G+VGY+ PE     R T + + ++ G +L
Sbjct: 135 LDDHGHIRISDLGLA-VHVPEGQT--IKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLL 191

Query: 753 LELLTGKTAVNQ 764
            E++ G++   Q
Sbjct: 192 YEMIAGQSPFQQ 203

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 42.3 bits (99), Expect = 7e-04
 Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 25/175 (14%)

Query: 605 ELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLH-----GCL--------- 650
           E  +L ++++ +V+             L  EYA  G+L   L      G           
Sbjct: 53  EFNLLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRN 112

Query: 651 --------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIG 702
                   E AL      S A  +++G+ +L       ++  DL+ RN+ +   ++ +I 
Sbjct: 113 SSYLDNPDERALTMGDLISFAWQISRGMQYL---AEMKLVHRDLAARNVLVAEGRKMKIS 169

Query: 703 DIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
           D  L + +    S    S     V ++  E  +    T   +V+SFGV+L E++T
Sbjct: 170 DFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVT 224

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 15/164 (9%)

Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL-HGCLENALDWASRYSI 662
           KE++ + + ++ NV+      +  D  +L   Y   G+L D++        LD A   ++
Sbjct: 48  KEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATV 107

Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGD--IELCKVIDPSKSTGSLS 720
              V +GL +LH   SN  +  D+   NI L      +I D  +         ++     
Sbjct: 108 LKEVLKGLEYLH---SNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRK 164

Query: 721 TVAGSVGYIPPE-----YAYTMRVTMAGNVYSFGVILLELLTGK 759
           T  G+  ++ PE     + Y  +     +++SFG+  +EL TG 
Sbjct: 165 TFVGTPCWMAPEVMEQVHGYDFKA----DIWSFGITAIELATGA 204

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 49/248 (19%), Positives = 92/248 (37%), Gaps = 44/248 (17%)

Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGC------------ 649
           F  E  V+ + +  +V+  L  V       +  E   KG L   L               
Sbjct: 56  FLNEASVMKEFNCHHVVRLLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGP 115

Query: 650 --LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC 707
             L+  +  A+       +A G+A+L    +   +  DL+ RN  +      +IGD  + 
Sbjct: 116 PTLQKFIQMAAE------IADGMAYLA---AKKFVHRDLAARNCMVAEDLTVKIGDFGMT 166

Query: 708 KVIDPS----KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVN 763
           + I  +    K    L  V     ++ PE       T   +V+SFGV+L E+ T      
Sbjct: 167 RDIYETDYYRKGGKGLLPVR----WMAPESLKDGVFTTKSDVWSFGVVLWEMAT------ 216

Query: 764 QGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMK 823
               LA+   +  + ++ L  ++D            ++L +++    C   +P+ RP   
Sbjct: 217 ----LAEQPYQGLSNEEVLKFVIDGGHLDLPENCPDKLLELMR---MCWQYNPKMRPTFL 269

Query: 824 SVLRMLLN 831
            ++  L +
Sbjct: 270 EIVSSLKD 277

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 42.0 bits (99), Expect = 8e-04
 Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 13/157 (8%)

Query: 605 ELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY--SI 662
           E  V+  + + +V+  L  +  S    L  +  P G L D +     +  +  S+Y  + 
Sbjct: 59  EAYVMASVDHPHVV-RLLGICLSSQVQLITQLMPLGCLLDYVR---NHKDNIGSQYLLNW 114

Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
            V +A+G+++L       ++  DL+ RN+ +K+ +  +I D  L K++D  +        
Sbjct: 115 CVQIAKGMSYLE---EKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEK--EYHAE 169

Query: 723 AGSV--GYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
            G V   ++  E       T   +V+S+GV + EL+T
Sbjct: 170 GGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMT 206

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 20/59 (33%), Positives = 29/59 (49%)

Query: 317 LSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQL 375
           L ++++S N L+         L NL  L+L  NNL    P + + + SL  L L GN L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|165291 PHA02988, PHA02988, hypothetical protein; Provisional

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 23/168 (13%)

Query: 602 FDKELEVLGKLSNSNVMTPLAYVL-ASDS---AYLFYEYAPKGTLFDVLHGCLENALDWA 657
            + E++ L ++ ++N++    +++   D      L  EY  +G L +VL    E  L + 
Sbjct: 65  TENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEYCTRGYLREVLD--KEKDLSFK 122

Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLD----LSTRNIFLKSLKEPQIGDIELCKVIDPS 713
           ++  +A+   +GL  L+ +T+ P   L     L T N  LK +       +E      P 
Sbjct: 123 TKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFLVTENYKLKII----CHGLEKILSSPPF 178

Query: 714 KSTGSLSTVAGSVGYIPPEYAYTM--RVTMAGNVYSFGVILLELLTGK 759
           K+   +        Y   +    +    T+  ++YS GV+L E+ TGK
Sbjct: 179 KNVNFMV-------YFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGK 219

Length = 283

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 9/99 (9%)

Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK--VIDPSKSTGSLS 720
           A  +A GL FLH   S  I+  DL   N+ L S    +I D  +CK  + D   +     
Sbjct: 107 AAEIAIGLFFLH---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGVTT----K 159

Query: 721 TVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
           T  G+  YI PE         + + ++FGV+L E+L G+
Sbjct: 160 TFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQ 198

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 46/202 (22%), Positives = 80/202 (39%), Gaps = 23/202 (11%)

Query: 565 KTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYV 624
           K  F   YK V+       +K    +          KF +E E+L +  + N++  +   
Sbjct: 5   KGNFGDVYKGVLKGNTEVAVKTCRSTLPPDL---KRKFLQEAEILKQYDHPNIVKLIGVC 61

Query: 625 LASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLL 684
           +     Y+  E  P G+L   L    +N L       +++  A G+ +L    S   +  
Sbjct: 62  VQKQPIYIVMELVPGGSLLTFLRKK-KNRLTVKKLLQMSLDAAAGMEYLE---SKNCIHR 117

Query: 685 DLSTRNIFLKSLKEPQIGDIELCKVIDPSKS---TGSLSTVAGSVGYIP-----PEYAYT 736
           DL+ RN          +G+  + K+ D   S    G + TV+  +  IP     PE    
Sbjct: 118 DLAARNCL--------VGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNY 169

Query: 737 MRVTMAGNVYSFGVILLELLTG 758
            R T   +V+S+G++L E  + 
Sbjct: 170 GRYTSESDVWSYGILLWETFSL 191

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV-IDPSKSTGSLST 721
           A  V   L FLH    + ++  DL   NI L +    ++ D  +CK  I    +T   +T
Sbjct: 102 AAEVTLALMFLH---RHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTT---TT 155

Query: 722 VAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767
             G+  YI PE    +    + + ++ GV++ E++ G+      NE
Sbjct: 156 FCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNE 201

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase, Kit

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 11/109 (10%)

Query: 653 ALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP 712
           ALD     S +  VA+G++FL    S   +  DL+ RNI L   +  +I D  L + I  
Sbjct: 210 ALDTEDLLSFSYQVAKGMSFL---ASKNCIHRDLAARNILLTHGRITKICDFGLARDI-- 264

Query: 713 SKSTGSLSTVAGS----VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                S   V G+    V ++ PE  +    T   +V+S+G++L E+ +
Sbjct: 265 --RNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFS 311

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. Kit signaling is involved in major cellular functions including cell survival, proliferation, differentiation, adhesion, and chemotaxis. Mutations in Kit, which result in constitutive ligand-independent activation, are found in human cancers such as gastrointestinal stromal tumor (GIST) and testicular germ cell tumor (TGCT). The aberrant expression of Kit and/or SCF is associated with other tumor types such as systemic mastocytosis and cancers of the breast, neurons, lung, prostate, colon, and rectum. Although the structure of the human Kit catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 375

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 19/163 (11%)

Query: 603 DKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL--HGCLENALDWASRY 660
           ++E+ +L KL + N++  L      D+ Y+F E  P G+L  +L  +G     +      
Sbjct: 50  EQEIALLSKLQHPNIVQYLGTEREEDNLYIFLELVPGGSLAKLLKKYGSFPEPV------ 103

Query: 661 SIAVGVAQ---GLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
            I +   Q   GL +LH       +  D+   NI + +    ++ D  + K +       
Sbjct: 104 -IRLYTRQILLGLEYLH---DRNTVHRDIKGANILVDTNGVVKLADFGMAKQV---VEFS 156

Query: 718 SLSTVAGSVGYIPPEY-AYTMRVTMAGNVYSFGVILLELLTGK 759
              +  GS  ++ PE  A      +A +++S G  +LE+ TGK
Sbjct: 157 FAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGK 199

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 24/164 (14%)

Query: 627 SDSAYLFYEYAPKGTLFDVLHG--CLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLL 684
           +D  Y   +Y   G LF  L    C    L+  +R+  A  +A  L +LH      I+  
Sbjct: 68  ADKLYFVLDYINGGELFYHLQRERCF---LEPRARF-YAAEIASALGYLHSLN---IVYR 120

Query: 685 DLSTRNIFLKSLKEPQIGDIELCKV-IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAG 743
           DL   NI L S     + D  LCK  I+ + +T   ST  G+  Y+ PE  +        
Sbjct: 121 DLKPENILLDSQGHIVLTDFGLCKENIEHNGTT---STFCGTPEYLAPEVLHKQPYDRTV 177

Query: 744 NVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD 787
           + +  G +L E+L G         L  +  RN+A+    D+IL+
Sbjct: 178 DWWCLGAVLYEMLYG---------LPPFYSRNTAEM--YDNILN 210

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 10/105 (9%)

Query: 654 LDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDI--ELCKVID 711
           L       I   + +GL +LH      I+  D+ T NIF+  + +  IGD+      V+ 
Sbjct: 154 LPIDQALIIEKQILEGLRYLHA---QRIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVA 210

Query: 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELL 756
           P+        +AG+V    PE     +     +++S G++L E+L
Sbjct: 211 PA-----FLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEML 250

Length = 357

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 54/235 (22%), Positives = 94/235 (40%), Gaps = 22/235 (9%)

Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E +V+ KLS+ N++            ++  EY   G L + L    +  L   
Sbjct: 42  SEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMANGCLLNYLRE-RKGKLGTE 100

Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
               +   V + + +L    SN  +  DL+ RN  +      ++ D  L + +   + T 
Sbjct: 101 WLLDMCSDVCEAMEYLE---SNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTS 157

Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNS 776
           S  T    V + PPE     R +   +V+SFGV++ E+ + GK    +          NS
Sbjct: 158 SQGT-KFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYER--------FSNS 208

Query: 777 AQQDKLDHILD-FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLL 830
              + ++ +   + + R  LA       V  +  +C    PE RP  K +L  L 
Sbjct: 209 ---EVVESVSAGYRLYRPKLAPTE----VYTIMYSCWHEKPEDRPAFKKLLSQLT 256

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 44/173 (25%), Positives = 70/173 (40%), Gaps = 25/173 (14%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENA-----LD 655
           +F KE  ++   ++ N++  L   L ++  Y+  E    G L   L            L 
Sbjct: 45  EFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLT 104

Query: 656 WASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEP------QIGDIELCKV 709
                 I + VA+G  +L        +  DL+ RN  L S K        +IGD  L + 
Sbjct: 105 LKELLDICLDVAKGCVYLEQMH---FIHRDLAARNC-LVSEKGYDADRVVKIGDFGLARD 160

Query: 710 IDPS-----KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
           I  S     +  G L      V ++ PE     + T   +V+SFGV++ E+LT
Sbjct: 161 IYKSDYYRKEGEGLL-----PVRWMAPESLLDGKFTTQSDVWSFGVLMWEILT 208

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 41.2 bits (96), Expect = 0.002
 Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 29/171 (16%)

Query: 606 LEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR------ 659
           ++++GK  + N++  L         Y+  EYA KG L + L       +++         
Sbjct: 77  MKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPE 134

Query: 660 --------YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK--- 708
                    S A  VA+G+ +L    S   +  DL+ RN+ +      +I D  L +   
Sbjct: 135 EQLSFKDLVSCAYQVARGMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIH 191

Query: 709 VIDPSKST--GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
            ID  K T  G L      V ++ PE  +    T   +V+SFGV+L E+ T
Sbjct: 192 HIDYYKKTTNGRLP-----VKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 237

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 6/109 (5%)

Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
           A  +  GL  LH      I+  DL   NI L      +I D+ L   I       ++   
Sbjct: 108 AAEITCGLEDLH---RERIVYRDLKPENILLDDYGHIRISDLGLAVEI---PEGETIRGR 161

Query: 723 AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKW 771
            G+VGY+ PE     R T + + +  G ++ E++ GK+   Q  E  K 
Sbjct: 162 VGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKR 210

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 12/154 (7%)

Query: 612 LSNSNVMTPLAY--------VLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           L+ +N+M  L +        V+  +  Y+  EY   G+L D L       L       +A
Sbjct: 49  LAEANLMKQLQHPRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMA 108

Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +A+G+AF+     N I   DL   NI +      +I D  L ++I+ ++ T       
Sbjct: 109 AQIAEGMAFIE--RKNYIHR-DLRAANILVSETLCCKIADFGLARLIEDNEYTAR-EGAK 164

Query: 724 GSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
             + +  PE       T+  +V+SFG++L E++T
Sbjct: 165 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 198

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 17/162 (10%)

Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL---HGCL---ENALDWA 657
           KE  +L K+ + N++       A    Y+  EY   G L   +    G L   +  L W 
Sbjct: 47  KEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWF 106

Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
            +  + V        LH          D+ ++NIFL    + ++GD    +++  +    
Sbjct: 107 VQMCLGVQHIHEKRVLH---------RDIKSKNIFLTQNGKVKLGDFGSARLL--TSPGA 155

Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
              T  G+  Y+PPE    M      +++S G IL EL T K
Sbjct: 156 YACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLK 197

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 8/103 (7%)

Query: 666 VAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIEL-CKVIDPSKSTGSLSTVAG 724
           +  GL  LH      I+  DL   N+ L      +I D+ L  ++    K  G     AG
Sbjct: 104 IICGLEHLH---QRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKIKGR----AG 156

Query: 725 SVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767
           + GY+ PE         + + ++ G  L E++ G++   Q  E
Sbjct: 157 TPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKE 199

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 10/135 (7%)

Query: 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL 686
            D      EYA  G L   +H    +          A  V  GL +LH    N I+  DL
Sbjct: 74  EDHVCFVMEYAAGGDLMMHIH---TDVFSEPRAVFYAACVVLGLQYLH---ENKIVYRDL 127

Query: 687 STRNIFLKSLKEPQIGDIELCKV-IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNV 745
              N+ L +    +I D  LCK  +     T   ST  G+  ++ PE       T A + 
Sbjct: 128 KLDNLLLDTEGFVKIADFGLCKEGMGFGDRT---STFCGTPEFLAPEVLTETSYTRAVDW 184

Query: 746 YSFGVILLELLTGKT 760
           +  GV++ E+L G++
Sbjct: 185 WGLGVLIYEMLVGES 199

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV-IDPSKSTGSLST 721
           A  +   L FLH      I+  DL   N+ L      ++ D  +CK  I   K+T   ST
Sbjct: 102 AAEITSALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTT---ST 155

Query: 722 VAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767
             G+  YI PE    M    + + ++ GV+L E+L G       NE
Sbjct: 156 FCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENE 201

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 40/209 (19%), Positives = 85/209 (40%), Gaps = 22/209 (10%)

Query: 567 RFSTYYKAVM----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLA 622
           RF   YK  +    P   +  +      DK  +     +F  E  +  +L + N++  L 
Sbjct: 17  RFGKVYKGHLFGTAPGEQTQAVAIKTLKDKA-EGPLREEFKHEAMMRSRLQHPNIVCLLG 75

Query: 623 YVLASDSAYLFYEYAPKGTLFDVL-----HG---------CLENALDWASRYSIAVGVAQ 668
            V       + + Y     L + L     H           +++ L+ A    I   +A 
Sbjct: 76  VVTKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAA 135

Query: 669 GLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGY 728
           G+ FL   +S+ ++  DL+TRN+ +      +I D+ L + +  +     +      + +
Sbjct: 136 GMEFL---SSHHVVHKDLATRNVLVFDKLNVKISDLGLFREVYAADYYKLMGNSLLPIRW 192

Query: 729 IPPEYAYTMRVTMAGNVYSFGVILLELLT 757
           + PE     + ++  +++S+GV+L E+ +
Sbjct: 193 MSPEAIMYGKFSIDSDIWSYGVVLWEVFS 221

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 29/171 (16%)

Query: 606 LEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHG--------------CLE 651
           ++++GK  + N++  L         Y+  EYA KG L + L                  E
Sbjct: 71  MKLIGK--HKNIINLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPE 128

Query: 652 NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK--- 708
             L +    S A  VA+G+ +L    S   +  DL+ RN+ +      +I D  L +   
Sbjct: 129 EQLSFKDLVSCAYQVARGMEYLE---SRRCIHRDLAARNVLVTEDNVMKIADFGLARGVH 185

Query: 709 VIDPSKST--GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
            ID  K T  G L      V ++ PE  +    T   +V+SFG+++ E+ T
Sbjct: 186 DIDYYKKTSNGRLP-----VKWMAPEALFDRVYTHQSDVWSFGILMWEIFT 231

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 40.2 bits (95), Expect = 0.003
 Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 14/130 (10%)

Query: 631 YLFYEYAPKGTLFDVLH--GCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLST 688
           YL  EY P G LF  L   G        A  Y  A  V   L +LH   S  I+  DL  
Sbjct: 77  YLVMEYVPGGELFSHLRKSGRFPE--PVARFY--AAQVVLALEYLH---SLDIVYRDLKP 129

Query: 689 RNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSF 748
            N+ L S    +I D    K +      G   T+ G+  Y+ PE   +     A + ++ 
Sbjct: 130 ENLLLDSDGYIKITDFGFAKRVK-----GRTYTLCGTPEYLAPEIILSKGYGKAVDWWAL 184

Query: 749 GVILLELLTG 758
           G+++ E+L G
Sbjct: 185 GILIYEMLAG 194

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 40.4 bits (94), Expect = 0.003
 Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 606 LEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHG--------------CLE 651
           ++++GK  + N++  L         Y+  EYA KG L + L                  +
Sbjct: 74  MKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPD 131

Query: 652 NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
             + +    S    VA+G+ +L    S   +  DL+ RN+ +      +I D  L + ++
Sbjct: 132 EQMTFKDLVSCTYQVARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDVN 188

Query: 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   +     V ++ PE  +    T   +V+SFGV++ E+ T
Sbjct: 189 NIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFT 234

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 51/230 (22%), Positives = 94/230 (40%), Gaps = 20/230 (8%)

Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S  +F +E +V+ KLS+  ++            Y+  EY   G L + L    +     +
Sbjct: 42  SEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNYLREHGKR-FQPS 100

Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
               +   V +G+A+L    S   +  DL+ RN  +      ++ D  L + +   + T 
Sbjct: 101 QLLEMCKDVCEGMAYLE---SKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTS 157

Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNS 776
           S+ +    V + PPE     + +   +V++FGV++ E+ + GK    + N        NS
Sbjct: 158 SVGS-KFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFN--------NS 208

Query: 777 AQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVL 826
              +K+   L   + R  LA       V  +  +C     E RP  + +L
Sbjct: 209 ETVEKVSQGL--RLYRPHLASE----KVYAIMYSCWHEKAEERPTFQQLL 252

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 41/182 (22%), Positives = 73/182 (40%), Gaps = 29/182 (15%)

Query: 599 HHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWAS 658
              F +E  ++ +  + N++  L          L +EY   G L + L      A    S
Sbjct: 52  QADFQREAALMAEFDHPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLS 111

Query: 659 RYS--------------------IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE 698
             +                    IA  VA G+A+L   +    +  DL+TRN  +     
Sbjct: 112 HSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYL---SERKFVHRDLATRNCLVGENMV 168

Query: 699 PQIGDIELCKVI---DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLEL 755
            +I D  L + I   D  K++ +    A  + ++PPE  +  R T   +V+++GV+L E+
Sbjct: 169 VKIADFGLSRNIYSADYYKASEN---DAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEI 225

Query: 756 LT 757
            +
Sbjct: 226 FS 227

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 20/123 (16%)

Query: 648 GCLENALDWASRY--SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIE 705
           G LE       ++   +A  +  G+A+LH      I+  D+   N+ + S K  +I D  
Sbjct: 157 GSLEGTHIADEQFLADVARQILSGIAYLH---RRHIVHRDIKPSNLLINSAKNVKIADFG 213

Query: 706 ----LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT-----MRVTMAGNVYSFGVILLELL 756
               L + +DP  S+       G++ Y+ PE   T          AG+++S GV +LE  
Sbjct: 214 VSRILAQTMDPCNSS------VGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFY 267

Query: 757 TGK 759
            G+
Sbjct: 268 LGR 270

Length = 353

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 47/197 (23%), Positives = 92/197 (46%), Gaps = 15/197 (7%)

Query: 565 KTRFSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFD---KELEVLGKLSNSNVMTP 620
           K +FS  YKA+ +  G    +KK+    +IF++          KE+++L +L + NV+  
Sbjct: 12  KGQFSVVYKAICLLDGRVVALKKV----QIFEMMDAKARQDCLKEIDLLKQLDHPNVIKY 67

Query: 621 LAYVLASDSAYLFYEYAPKGTLFDVLHGCLENA--LDWASRYSIAVGVAQGLAFLHGFTS 678
           LA  + ++   +  E A  G L  ++    +    +   + +   V +   L  +H   S
Sbjct: 68  LASFIENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMH---S 124

Query: 679 NPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMR 738
             I+  D+   N+F+ +    ++GD+ L +    SK+T + S V G+  Y+ PE  +   
Sbjct: 125 KRIMHRDIKPANVFITATGVVKLGDLGLGRFFS-SKTTAAHSLV-GTPYYMSPERIHENG 182

Query: 739 VTMAGNVYSFGVILLEL 755
                +++S G +L E+
Sbjct: 183 YNFKSDIWSLGCLLYEM 199

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 40.5 bits (94), Expect = 0.004
 Identities = 57/223 (25%), Positives = 99/223 (44%), Gaps = 26/223 (11%)

Query: 58  SLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGS 117
           +L L  N+    LP NL     ++ L  + N     IP  + D   +  ++LS N ++  
Sbjct: 203 TLILDNNELKS-LPENLQGN--IKTLYANSNQL-TSIPATLPD--TIQEMELSINRIT-E 255

Query: 118 VPDRIGELSKLEVLILSANNLDGRLPTSLAS-ITTLSRFAANQNKFSGSVPGGITRFLRN 176
           +P+R+   S L+ L L  N +   LP +L   +  LS +  +       +P GIT     
Sbjct: 256 LPERLP--SALQSLDLFHNKISC-LPENLPEELRYLSVYDNSIRTLPAHLPSGITHL--- 309

Query: 177 LDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPS 236
                +  L  +P  L   P L+T++   N L  SLP ++ P L  L +  N    +I  
Sbjct: 310 --NVQSNSLTALPETL--PPGLKTLEAGENALT-SLPASLPPELQVLDVSKN----QITV 360

Query: 237 ATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNEL 279
              T    +T L++  N+ T + P+ L +  +L ++  ++N L
Sbjct: 361 LPETLPPTITTLDVSRNALTNL-PENLPA--ALQIMQASRNNL 400

Length = 754

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 40.0 bits (93), Expect = 0.004
 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 5/105 (4%)

Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
           A  ++ GL FLH      I+  DL   N+ L S    +I D  +CK  +      +  T 
Sbjct: 107 AAEISVGLFFLH---RRGIIYRDLKLDNVMLDSEGHIKIADFGMCK--EHMVDGVTTRTF 161

Query: 723 AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767
            G+  YI PE         + + +++GV+L E+L G+   +  +E
Sbjct: 162 CGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDE 206

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 40.1 bits (93), Expect = 0.004
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 17/190 (8%)

Query: 584 IKKLNWSDKIFQLGSHHKFD---KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKG 640
           IKK+++S K     S+ K+    KE++ L ++ + N +      L   +A+L  EY   G
Sbjct: 55  IKKMSYSGK----QSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEYC-LG 109

Query: 641 TLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQ 700
           +  D+L    +  L      +I  G  QGLA+LH   S+ ++  D+   NI L    + +
Sbjct: 110 SASDLLE-VHKKPLQEVEIAAITHGALQGLAYLH---SHNMIHRDIKAGNILLTEPGQVK 165

Query: 701 IGDIELCKVIDPSKS-TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
           + D     +  P+ S  G+   +A  V     E  Y  +V    +V+S G+  +EL   K
Sbjct: 166 LADFGSASIASPANSFVGTPYWMAPEVILAMDEGQYDGKV----DVWSLGITCIELAERK 221

Query: 760 TAVNQGNELA 769
             +   N ++
Sbjct: 222 PPLFNMNAMS 231

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 21/164 (12%)

Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLE----NALDWA 657
           F +E  V+ +L +  ++  L  V   +   L  E AP G L   L    E    +  + A
Sbjct: 43  FLREASVMAQLDHPCIVR-LIGVCKGEPLMLVMELAPLGPLLKYLKKRREIPVSDLKELA 101

Query: 658 SRYSIAVGVAQGLAFLHG--FTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS 715
            +      VA G+A+L    F        DL+ RN+ L +  + +I D  + + +    S
Sbjct: 102 HQ------VAMGMAYLESKHFVHR-----DLAARNVLLVNRHQAKISDFGMSRALGAG-S 149

Query: 716 TGSLSTVAGS--VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
               +T AG   + +  PE     + +   +V+S+GV L E  +
Sbjct: 150 DYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFS 193

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 47/231 (20%), Positives = 102/231 (44%), Gaps = 26/231 (11%)

Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLH--GCLENALDWASRYS 661
           KE+ ++ +L++ +++  L          LF E+   G++  +L   G  + A+     Y+
Sbjct: 52  KEIRLMARLNHPHIIRMLGATCEDSHFNLFVEWMAGGSVSHLLSKYGAFKEAV--IINYT 109

Query: 662 IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL-KEPQIGDIELCKVIDPSKSTGS-- 718
             +   +GL++LH    N I+  D+   N+ + S  +  +I D      +  +K TG+  
Sbjct: 110 EQL--LRGLSYLH---ENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLA-AKGTGAGE 163

Query: 719 -LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSA 777
               + G++ ++ PE     +   + +V+S G +++E+ T K   N              
Sbjct: 164 FQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWN-----------AEK 212

Query: 778 QQDKLDHILDFNVSRTSLAVRSQMLTVLK-VAVACVSVSPEARPKMKSVLR 827
             + L  I     + T+ ++   +   L+ V + C+ + PE RP  + +L+
Sbjct: 213 HSNHLALIFKIASATTAPSIPEHLSPGLRDVTLRCLELQPEDRPPSRELLK 263

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	833
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
KOG0610	459	consensus Putative serine/threonine protein kinase	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
KOG3653	534	consensus Transforming growth factor beta/activin	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
KOG4717	864	consensus Serine/threonine protein kinase [Signal	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
KOG0584	632	consensus Serine/threonine protein kinase [General	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
KOG0596	677	consensus Dual specificity; serine/threonine and t	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
PTZ00284	467	protein kinase; Provisional	100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
KOG0586	596	consensus Serine/threonine protein kinase [General	100.0
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	100.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
KOG0690	516	consensus Serine/threonine protein kinase [Signal	100.0
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	100.0
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	100.0
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	100.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	100.0
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	100.0
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	100.0
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	100.0
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	100.0
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	100.0
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	100.0
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	100.0
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	100.0
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	100.0
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	100.0
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	100.0
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	100.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	100.0
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	100.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	100.0
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	100.0
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	100.0
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	100.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	100.0
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	100.0
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	100.0
PLN00009	294	cyclin-dependent kinase A; Provisional	100.0
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	100.0
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	100.0
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	100.0
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	100.0
KOG2052	513	consensus Activin A type IB receptor, serine/threo	100.0
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	100.0
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	100.0
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	100.0
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	100.0
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	100.0
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	100.0
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	100.0
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	100.0
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	100.0
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	100.0
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	100.0
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	100.0
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	100.0
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	100.0
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	100.0
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	100.0
KOG0607	463	consensus MAP kinase-interacting kinase and relate	100.0
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	100.0
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	100.0
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	100.0
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	100.0
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	100.0
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	100.0
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	100.0
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	100.0
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	100.0
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	100.0
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	100.0
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	100.0
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	100.0
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	100.0
KOG0696	683	consensus Serine/threonine protein kinase [Signal	100.0
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	100.0
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	100.0
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	100.0
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	100.0
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	100.0
PHA03210	501	serine/threonine kinase US3; Provisional	100.0
PHA02882	294	putative serine/threonine kinase; Provisional	100.0
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	100.0
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	100.0
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	100.0
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	100.0
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	100.0
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	100.0
PTZ00024	335	cyclin-dependent protein kinase; Provisional	100.0
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	100.0
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	100.0
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	100.0
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	100.0
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	100.0
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	100.0
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	100.0
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	100.0
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	100.0
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	100.0
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	100.0
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	100.0
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	100.0
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	100.0
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	100.0
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	100.0
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	100.0
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	100.0
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	100.0
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	100.0
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	100.0
KOG0695	593	consensus Serine/threonine protein kinase [Signal	100.0
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	100.0
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	100.0
PLN03224	507	probable serine/threonine protein kinase; Provisio	100.0
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	100.0
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	100.0
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.98
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.98
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.98
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.97
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.96
KOG1152	772	consensus Signal transduction serine/threonine kin	99.96
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.95
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.95
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.95
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.94
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.94
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.93
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
PRK09188	365	serine/threonine protein kinase; Provisional	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.9
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.89
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.86
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.86
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.85
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.85
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.83
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.83
PRK12274	218	serine/threonine protein kinase; Provisional	99.83
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.83
PRK10345	210	hypothetical protein; Provisional	99.79
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.79
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.79
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.75
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.74
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.74
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.74
smart00090	237	RIO RIO-like kinase.	99.74
PRK14879	211	serine/threonine protein kinase; Provisional	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.71
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.71
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.64
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.64
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.62
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.58
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.52
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.48
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.39
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.37
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.32
PLN03150	623	hypothetical protein; Provisional	99.31
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.3
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.29
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.28
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.27
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.27
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.26
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.22
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.21
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.19
PLN03150	623	hypothetical protein; Provisional	99.18
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.14
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.13
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.13
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	99.12
KOG1243	690	consensus Protein kinase [General function predict	99.03
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.0
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.96
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.95
KOG3087	229	consensus Serine/threonine protein kinase [General	98.93
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.93
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.9
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.89
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.82
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.79
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.78
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.78
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.7
KOG0576	829	consensus Mitogen-activated protein kinase kinase	98.7
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.66
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.64
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.61
PRK09902	216	hypothetical protein; Provisional	98.52
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.46
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.38
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.35
COG4248	637	Uncharacterized protein with protein kinase and he	98.34
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.31
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.3

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.9e-100  Score=945.21  Aligned_cols=791  Identities=31%  Similarity=0.503  Sum_probs=559.9

Q ss_pred             CCCCCCEEECCCCCCCC-cccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEE
Q 003296            6 GIDGLKLLNFSKNELVS-LPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELV   84 (833)
Q Consensus         6 ~l~~L~~L~ls~N~l~~-i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~   84 (833)
                      ++++|++|+|++|.+++ +|. ..+++|++|||++|.+++..|..|+++++|++|+|++|.+.+..|..|+++++|++|+
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  194 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT  194 (968)
T ss_pred             cCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence            67788888888888876 443 5577777888887777777777777777788888877777777777777777777777


Q ss_pred             ccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccc
Q 003296           85 LSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSG  164 (833)
Q Consensus        85 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~  164 (833)
                      |++|.+.+.+|..++++++|+.|+|++|++++.+|..|+++++|++|+|++|.+++.+|..|.++++|+.|++++|++++
T Consensus       195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  274 (968)
T PLN00113        195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG  274 (968)
T ss_pred             ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cCChhh--hhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCC--cCCcEEEcCCccccCCCCccccC
Q 003296          165 SVPGGI--TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEIPSATFT  240 (833)
Q Consensus       165 ~~p~~~--~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~f~  240 (833)
                      .+|..+  ...|+.|+|++|++.+.+|..+..+++|+.|++++|.+.+.+|..+.  ++|+.|++++|.+.+.+| ..+.
T Consensus       275 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~  353 (968)
T PLN00113        275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP-KNLG  353 (968)
T ss_pred             cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC-hHHh
Confidence            777655  34577777777777777776666677777777777776666665443  566666666666554433 3445


Q ss_pred             CCCCCCEEECCCCCCCCCCCccc------------------------cCCCCCcEEEccCCccCCCChhhhCCCCCCcEE
Q 003296          241 SLEKLTYLELDNNSFTGMIPQQL------------------------GSCRSLTLLNLAQNELNGSLPIQLGSLGILQVM  296 (833)
Q Consensus       241 ~l~~L~~L~L~~N~l~~~~~~~~------------------------~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  296 (833)
                      .+++|+.|+|++|++++..|..+                        +.+++|+.|++++|++++..|..+..++.|+.|
T Consensus       354 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  433 (968)
T PLN00113        354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL  433 (968)
T ss_pred             CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEE
Confidence            55555555555555555555444                        445555555555555555555555555555555


Q ss_pred             EccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCC
Q 003296          297 NLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLS  376 (833)
Q Consensus       297 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  376 (833)
                      ++++|.+++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++++..|..|.++++|+.|+|++|++.
T Consensus       434 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  512 (968)
T PLN00113        434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS  512 (968)
T ss_pred             ECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcce
Confidence            555555555555555555555666666666555555544 3466777777888888888888888888999999999988


Q ss_pred             ccCCCCccccc--ceeeccccccccchhhhhccCCCCCEEecccCcCccccchhccCCCCCCeeeCcCCcccccCCCCCc
Q 003296          377 GTIPMMPPRLQ--IALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSK  454 (833)
Q Consensus       377 ~~~p~~~~~~~--~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~  454 (833)
                      +.+|.....+.  ..|++++|.+++.+|..|..+++|+.|||++|++++.+|..+..+++|+.+++++|+++|.+|....
T Consensus       513 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~  592 (968)
T PLN00113        513 GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGA  592 (968)
T ss_pred             eeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcch
Confidence            88886655443  6799999999999999999999999999999999999999999999999999999999999998766


Q ss_pred             ccccc---cCCCcccccccCCCC-Cc--ccccccceeehhhHHHHHHHHHHHHHHHHHhhhhhhccccccccccCCCCCC
Q 003296          455 WVSVD---TTGNLKLINVTAPDT-SP--EKRRKSVVVPIVIALAAAILAVGVVSIFVLSISRRFYRVKDEHLQLGEDISS  528 (833)
Q Consensus       455 ~~~~~---~~~n~~l~~~~~~~~-~~--~~~~~~~~~~i~i~i~~~~l~~~~~~~~~~~~~rr~~r~~~~~~~~~~~~~~  528 (833)
                      +..+.   ..||..+|+...+.. .+  ...+......++++++++++++++++++++++++| ++...+.   .+. . 
T Consensus       593 ~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~-~-  666 (968)
T PLN00113        593 FLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPSWWFYITCTLGAFLVLALVAFGFVFIRGR-NNLELKR---VEN-E-  666 (968)
T ss_pred             hcccChhhhcCCccccCCccccCCCCCccccccceeeeehhHHHHHHHHHHHHHHHHHHHHhh-hcccccc---ccc-c-
Confidence            55443   448999998543211 11  11111112222222222222222222222222211 1111000   000 0 


Q ss_pred             cccccccccccccccc---chhhHHHHHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHH
Q 003296          529 PQVIQGNLLTGNGIHR---SNIDFTKAMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDK  604 (833)
Q Consensus       529 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~  604 (833)
                           ...+....+..   ...... .....++..++||+|+||.||+|+. .+|..||||++....        ....+
T Consensus       667 -----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~--------~~~~~  732 (968)
T PLN00113        667 -----DGTWELQFFDSKVSKSITIN-DILSSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVN--------SIPSS  732 (968)
T ss_pred             -----cccccccccccccchhhhHH-HHHhhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCc--------cccHH
Confidence                 00011000110   112222 3445678889999999999999997 589999999984211        12245


Q ss_pred             HHHHHhcCCCCCcccceEEEecCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeec
Q 003296          605 ELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLL  684 (833)
Q Consensus       605 E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHr  684 (833)
                      |++++++++|||||+++|+|.+++..|+|||||++|+|.++++.     ++|.++.+|+.|+|+|++|||+.++++|+||
T Consensus       733 ~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~  807 (968)
T PLN00113        733 EIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRN-----LSWERRRKIAIGIAKALRFLHCRCSPAVVVG  807 (968)
T ss_pred             HHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHhc-----CCHHHHHHHHHHHHHHHHHhccCCCCCeecC
Confidence            78999999999999999999999999999999999999999974     8999999999999999999998878899999


Q ss_pred             CCCccceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccC
Q 003296          685 DLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQ  764 (833)
Q Consensus       685 dlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~  764 (833)
                      |+||+||+++.++.+++. ||.+......      ....||++|||||++.+..++.|+|||||||++|||+||+.||+.
T Consensus       808 dlkp~Nil~~~~~~~~~~-~~~~~~~~~~------~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~  880 (968)
T PLN00113        808 NLSPEKIIIDGKDEPHLR-LSLPGLLCTD------TKCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADA  880 (968)
T ss_pred             CCCHHhEEECCCCceEEE-eccccccccC------CCccccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCc
Confidence            999999999999888875 6655433211      234689999999999999999999999999999999999999863


Q ss_pred             ----CccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          765 ----GNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       765 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                          .....+|+...... .....++|+.+.........++.++.+++.+||+.||++||||+||+++|+++
T Consensus       881 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~~P~~RPt~~evl~~L~~~  951 (968)
T PLN00113        881 EFGVHGSIVEWARYCYSD-CHLDMWIDPSIRGDVSVNQNEIVEVMNLALHCTATDPTARPCANDVLKTLESA  951 (968)
T ss_pred             ccCCCCcHHHHHHHhcCc-cchhheeCccccCCCCccHHHHHHHHHHHHhhCcCCchhCcCHHHHHHHHHHh
Confidence                23456666543322 23344555555433333345677889999999999999999999999999875

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.5e-57  Score=481.86  Aligned_cols=278  Identities=34%  Similarity=0.556  Sum_probs=238.9

Q ss_pred             hhHHHHHHHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec
Q 003296          547 IDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA  626 (833)
Q Consensus       547 ~~~~~~~~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~  626 (833)
                      .++. .||++|...+.||+|+||.||+|.+++|+.||||++.....   .. .++|.+|++++++++|||+|+++|||.+
T Consensus        68 ~el~-~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~---~~-~~eF~~Ei~~ls~l~H~Nlv~LlGyC~e  142 (361)
T KOG1187|consen   68 DELR-KATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSG---QG-EREFLNEVEILSRLRHPNLVKLLGYCLE  142 (361)
T ss_pred             HHHH-HHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCC---cc-hhHHHHHHHHHhcCCCcCcccEEEEEec
Confidence            5565 99999999999999999999999999999999998842211   11 4679999999999999999999999999


Q ss_pred             CC-ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccce
Q 003296          627 SD-SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIE  705 (833)
Q Consensus       627 ~~-~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfg  705 (833)
                      .+ +.+||||||++|+|.++|+......++|.+|++||.++|+||+|||+.+.++||||||||+|||||+++++||+|||
T Consensus       143 ~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFG  222 (361)
T KOG1187|consen  143 GGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFG  222 (361)
T ss_pred             CCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccCcc
Confidence            98 59999999999999999997533389999999999999999999999998899999999999999999999999999


Q ss_pred             eeeeeCCCCCCCccccc-cccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccC-----CccHHHHHHHhhccc
Q 003296          706 LCKVIDPSKSTGSLSTV-AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQ-----GNELAKWVLRNSAQQ  779 (833)
Q Consensus       706 l~~~~~~~~~~~~~~~~-~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~-----~~~~~~~~~~~~~~~  779 (833)
                      +|+...... . ...+. .||.+|+||||...+..+.|+|||||||+++|++||++|.+.     ...+..|+.......
T Consensus       223 La~~~~~~~-~-~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~  300 (361)
T KOG1187|consen  223 LAKLGPEGD-T-SVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLLEEG  300 (361)
T ss_pred             CcccCCccc-c-ceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHHHCc
Confidence            997654311 1 11222 899999999999999999999999999999999999998873     234788886666653


Q ss_pred             ccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          780 DKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                       .+.+++|+.+..........+.++..++.+|++.+|++||+|.||+++|+.+
T Consensus       301 -~~~eiiD~~l~~~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~~  352 (361)
T KOG1187|consen  301 -KLREIVDPRLKEGEYPDEKEVKKLAELALRCLRPDPKERPTMSQVVKELEGI  352 (361)
T ss_pred             -chhheeCCCccCCCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHHHhh
Confidence             7899999998632222226778899999999999999999999999999754

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.4e-53  Score=527.63  Aligned_cols=445  Identities=36%  Similarity=0.572  Sum_probs=385.5

Q ss_pred             CCCCCCCCEEECCCCCCCC-ccc--ccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCC
Q 003296            4 CGGIDGLKLLNFSKNELVS-LPT--FNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKAL   80 (833)
Q Consensus         4 ~~~l~~L~~L~ls~N~l~~-i~~--f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L   80 (833)
                      +..+++|+.|+|++|++++ +|.  |..+++|++|+|++|++++..|.  +.+++|++|+|++|.+++..|..|+.+++|
T Consensus        89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L  166 (968)
T PLN00113         89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSL  166 (968)
T ss_pred             HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCC
Confidence            5678999999999999985 774  66899999999999999987775  568999999999999999999999999999


Q ss_pred             CEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccc
Q 003296           81 EELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQN  160 (833)
Q Consensus        81 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n  160 (833)
                      ++|+|++|.+.+.+|..|+++++|++|+|++|.+.+.+|..|+++++|++|+|++|++++.+|..++.+++|+.|++++|
T Consensus       167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  246 (968)
T PLN00113        167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN  246 (968)
T ss_pred             CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCChhh--hhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCC--cCCcEEEcCCccccCCCCc
Q 003296          161 KFSGSVPGGI--TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEIPS  236 (833)
Q Consensus       161 ~l~~~~p~~~--~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~  236 (833)
                      .+++.+|..+  .+.|+.|+|++|++.+..|..+..+++|+.|+|++|.+.+.+|..+.  ++|+.|++++|.+.+.+| 
T Consensus       247 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-  325 (968)
T PLN00113        247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP-  325 (968)
T ss_pred             eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC-
Confidence            9999999877  56799999999999999999999999999999999999999888765  799999999999887554 


Q ss_pred             cccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCc
Q 003296          237 ATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKL  316 (833)
Q Consensus       237 ~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  316 (833)
                      ..+..+++|+.|+|++|.+++..|..++.+++|+.|++++|++.+.+|..+..+++|+.|++++|.+.+.+|..+..+++
T Consensus       326 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~  405 (968)
T PLN00113        326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS  405 (968)
T ss_pred             hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCC
Confidence            56889999999999999999999999999999999999999999888888888888888888888888888888888888


Q ss_pred             CceeeccCCcCcccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCccCC----------------
Q 003296          317 LSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIP----------------  380 (833)
Q Consensus       317 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p----------------  380 (833)
                      |+.|++++|++++.+|..|..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|                
T Consensus       406 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n  485 (968)
T PLN00113        406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRN  485 (968)
T ss_pred             CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCC
Confidence            8888888888887777777777777777777777777777666666666666666555554444                


Q ss_pred             -------CCccccc--ceeeccccccccchhhhhccCCCCCEEecccCcCccccchhccCCCCCCeeeCcCCcccccCCC
Q 003296          381 -------MMPPRLQ--IALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPK  451 (833)
Q Consensus       381 -------~~~~~~~--~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~  451 (833)
                             .....+.  ..|++++|.+.+.+|..|..+++|++|++++|.+++.+|..|..+++|+.|++++|+++|.+|.
T Consensus       486 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  565 (968)
T PLN00113        486 QFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK  565 (968)
T ss_pred             ccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence                   3222222  4577777878777888888888888888888888888888888888888888888888887775

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-50  Score=429.78  Aligned_cols=254  Identities=25%  Similarity=0.314  Sum_probs=209.3

Q ss_pred             CccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC-ceEEEEeeC
Q 003296          559 PLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD-SAYLFYEYA  637 (833)
Q Consensus       559 ~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~-~~~lv~ey~  637 (833)
                      ..+.+|+|+||+||+|.+.....||||++.........  .++|.+|+.+|++++|||||+++|+|.++. ..++|||||
T Consensus        45 ~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~--~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~  122 (362)
T KOG0192|consen   45 IEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDES--RKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYM  122 (362)
T ss_pred             hhhhcccCCceeEEEEEeCCceeEEEEEecchhcChHH--HHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeC
Confidence            34569999999999999955455999999543322221  679999999999999999999999999887 799999999


Q ss_pred             CCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCC-eeecCCCccceeeCCCC-CceeccceeeeeeCCCCC
Q 003296          638 PKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNP-ILLLDLSTRNIFLKSLK-EPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       638 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~-iiHrdlk~~Nill~~~~-~~ki~dfgl~~~~~~~~~  715 (833)
                      ++|+|.+++++.....++|..++.+|.|||+|+.|||   +.+ ||||||||+|||++.++ ++||+|||+++...... 
T Consensus       123 ~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH---~~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~-  198 (362)
T KOG0192|consen  123 PGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLH---SEGPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVISK-  198 (362)
T ss_pred             CCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHh---cCCCeeecccChhhEEEcCCCCEEEECCCccceeecccc-
Confidence            9999999998754668999999999999999999999   555 99999999999999997 99999999999875432 


Q ss_pred             CCcccccccccccccccccc--CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          716 TGSLSTVAGSVGYIPPEYAY--TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~--~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                       ..++...||+.|||||++.  ...|+.|+|||||||++|||+||+.||.+... .+.+........+      +.++  
T Consensus       199 -~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~-~~~~~~v~~~~~R------p~~p--  268 (362)
T KOG0192|consen  199 -TSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAP-VQVASAVVVGGLR------PPIP--  268 (362)
T ss_pred             -ccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCH-HHHHHHHHhcCCC------CCCC--
Confidence             2334578999999999999  56899999999999999999999999986554 3333222222111      1111  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                          ......+..++.+||+.||++||++.||+..|+.+
T Consensus       269 ----~~~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~  303 (362)
T KOG0192|consen  269 ----KECPPHLSSLMERCWLVDPSRRPSFLEIVSRLESI  303 (362)
T ss_pred             ----ccCCHHHHHHHHHhCCCCCCcCCCHHHHHHHHHHH
Confidence                12455778899999999999999999999999864

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-51  Score=411.60  Aligned_cols=253  Identities=22%  Similarity=0.283  Sum_probs=209.9

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC-ceEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD-SAYLF  633 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~-~~~lv  633 (833)
                      +.+..++||+|..|+|||+.+ ++++.+|.|.+.-   ..+...+++..+|++++++++||+||++||+|+.+. +.+++
T Consensus        80 dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~---~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~  156 (364)
T KOG0581|consen   80 DLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILL---NIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISIC  156 (364)
T ss_pred             HhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecc---cCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEee
Confidence            344568999999999999998 4899999999931   122334678999999999999999999999999998 59999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||||++|||++++..  .+.+++...-+|+.+|++||.|||+  +++||||||||+|||++..|++||||||.++.+...
T Consensus       157 mEYMDgGSLd~~~k~--~g~i~E~~L~~ia~~VL~GL~YLh~--~~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS  232 (364)
T KOG0581|consen  157 MEYMDGGSLDDILKR--VGRIPEPVLGKIARAVLRGLSYLHE--ERKIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNS  232 (364)
T ss_pred             hhhcCCCCHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHhh--ccCeeeccCCHHHeeeccCCCEEeccccccHHhhhh
Confidence            999999999999986  3569999999999999999999995  378999999999999999999999999999887543


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCC-ccHHHHHHHhhcccccccccccccccC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQG-NELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                          ...+++||..|||||.+.+..|+.++||||||++++|+.+|+.||... .....|+.       -+..+++...+.
T Consensus       233 ----~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~~-------Ll~~Iv~~ppP~  301 (364)
T KOG0581|consen  233 ----IANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPYLDIFE-------LLCAIVDEPPPR  301 (364)
T ss_pred             ----hcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCCCCCCHHH-------HHHHHhcCCCCC
Confidence                336789999999999999999999999999999999999999999753 11112221       122233322221


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .+..  ..+.++.+++..||++||.+||+++|+++|
T Consensus       302 lP~~--~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~H  335 (364)
T KOG0581|consen  302 LPEG--EFSPEFRSFVSCCLRKDPSERPSAKQLLQH  335 (364)
T ss_pred             CCcc--cCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence            1111  357789999999999999999999999876

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4e-49  Score=418.65  Aligned_cols=251  Identities=20%  Similarity=0.286  Sum_probs=214.9

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ..|+..++||+|+|++||+++. .+|..||+|++ .+........++...+||+|.++++|||||+++++|++.+.+|||
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvV-pk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYiv   96 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVV-PKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIV   96 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEe-ehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEE
Confidence            4688899999999999999998 89999999999 444555566778899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      .|+|++|+|..+++.  ..++++.+++.++.||+.||.|||   +.+|||||||..|+++++++++||+|||+|..+...
T Consensus        97 LELC~~~sL~el~Kr--rk~ltEpEary~l~QIv~GlkYLH---~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~  171 (592)
T KOG0575|consen   97 LELCHRGSLMELLKR--RKPLTEPEARYFLRQIVEGLKYLH---SLGIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYD  171 (592)
T ss_pred             EEecCCccHHHHHHh--cCCCCcHHHHHHHHHHHHHHHHHH---hcCceecccchhheeecCcCcEEecccceeeeecCc
Confidence            999999999999984  567999999999999999999999   888999999999999999999999999999988644


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      ...  -.+.||||.|.|||++....++..+||||+|||+|.|++|++||+... ..+...........        +   
T Consensus       172 ~Er--k~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~-vkety~~Ik~~~Y~--------~---  237 (592)
T KOG0575|consen  172 GER--KKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKT-VKETYNKIKLNEYS--------M---  237 (592)
T ss_pred             ccc--cceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccch-HHHHHHHHHhcCcc--------c---
Confidence            322  257899999999999999899999999999999999999999997432 22111111111111        1   


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                         +...+.++.+||.++|++||.+|||+++|+.+
T Consensus       238 ---P~~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~h  269 (592)
T KOG0575|consen  238 ---PSHLSAEAKDLIRKLLRPNPSERPSLDEVLDH  269 (592)
T ss_pred             ---ccccCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence               11345578899999999999999999999875

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=7.8e-50  Score=402.96  Aligned_cols=258  Identities=22%  Similarity=0.260  Sum_probs=210.6

Q ss_pred             HHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhh---ccChhHHHHHHHHHhcCCCCCcccceEEEecCC
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQ---LGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD  628 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~  628 (833)
                      ..+.|...+.+|+|+||.|-+|.. .+|+.||||++++......   ........+|++||++++|||||+++++|..++
T Consensus       170 ~~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~d  249 (475)
T KOG0615|consen  170 FNDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPD  249 (475)
T ss_pred             hcceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCC
Confidence            345567789999999999999996 5899999999963322111   112234579999999999999999999999999


Q ss_pred             ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC---CCceeccce
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL---KEPQIGDIE  705 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~---~~~ki~dfg  705 (833)
                      ..|+|||||+||+|++.+-.  ...+.+...+-++.|++.|+.|||   +.+|+||||||+|||+..+   ..+||+|||
T Consensus       250 s~YmVlE~v~GGeLfd~vv~--nk~l~ed~~K~~f~Qll~avkYLH---~~GI~HRDiKPeNILl~~~~e~~llKItDFG  324 (475)
T KOG0615|consen  250 SSYMVLEYVEGGELFDKVVA--NKYLREDLGKLLFKQLLTAVKYLH---SQGIIHRDIKPENILLSNDAEDCLLKITDFG  324 (475)
T ss_pred             ceEEEEEEecCccHHHHHHh--ccccccchhHHHHHHHHHHHHHHH---HcCcccccCCcceEEeccCCcceEEEecccc
Confidence            99999999999999999876  456788888999999999999999   8999999999999999765   678999999


Q ss_pred             eeeeeCCCCCCCccccccccccccccccccCCcc---cccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccc
Q 003296          706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRV---TMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL  782 (833)
Q Consensus       706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~---~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~  782 (833)
                      +|+.....   ..+.+.||||.|.|||++.+..+   ..|+|+||+|||||-+++|.+||.+......          -.
T Consensus       325 lAK~~g~~---sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~s----------l~  391 (475)
T KOG0615|consen  325 LAKVSGEG---SFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPS----------LK  391 (475)
T ss_pred             hhhccccc---eehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCcc----------HH
Confidence            99987533   25678999999999999986543   3588999999999999999999985322110          11


Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          783 DHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      +.+....+...+..+.+...+++++|.+||..||++|||+.|+++|
T Consensus       392 eQI~~G~y~f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~h  437 (475)
T KOG0615|consen  392 EQILKGRYAFGPLQWDRISEEALDLINWMLVVDPENRPSADEALNH  437 (475)
T ss_pred             HHHhcCcccccChhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhcC
Confidence            1222233333445667888999999999999999999999999875

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-49  Score=400.87  Aligned_cols=202  Identities=25%  Similarity=0.351  Sum_probs=179.2

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      .+|...+.||+|+||+||+|++ .+|..||||++..+. . ..+.++....|+++|+.++|||||+++++++.++.+|||
T Consensus        10 ~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~-l-~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lV   87 (429)
T KOG0595|consen   10 GDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKK-L-NKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLV   87 (429)
T ss_pred             ccceehhhccCcceEEEEEeEeccCCceEEeeeehhhc-c-CHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEE
Confidence            4566777899999999999997 478999999995331 1 223456788999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC------CCceeccceee
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL------KEPQIGDIELC  707 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~------~~~ki~dfgl~  707 (833)
                      ||||.||||.++++.  .+.+++.+.+.++.|+|.||++||   +++||||||||+||||+..      -.+||+|||+|
T Consensus        88 MEyC~gGDLs~yi~~--~~~l~e~t~r~Fm~QLA~alq~L~---~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfA  162 (429)
T KOG0595|consen   88 MEYCNGGDLSDYIRR--RGRLPEATARHFMQQLASALQFLH---ENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFA  162 (429)
T ss_pred             EEeCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCcceEEeccCCCCCCCceEEecccchh
Confidence            999999999999997  447999999999999999999999   8999999999999999865      35799999999


Q ss_pred             eeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCc
Q 003296          708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGN  766 (833)
Q Consensus       708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~  766 (833)
                      +.+.++.   ...+.||++.|||||++..++|+.|+|+||.|+|+|||++|+.||+...
T Consensus       163 R~L~~~~---~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~t  218 (429)
T KOG0595|consen  163 RFLQPGS---MAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAET  218 (429)
T ss_pred             hhCCchh---HHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCccccC
Confidence            9987544   3467899999999999999999999999999999999999999998543

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=9.5e-50  Score=382.41  Aligned_cols=258  Identities=17%  Similarity=0.266  Sum_probs=208.8

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceE-EEecCCc-eE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLA-YVLASDS-AY  631 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~-~~~~~~~-~~  631 (833)
                      ++|.+.+.||+|+||+|||+.. .+|..||.|.++..  ..+.+.++....|+.+|++++|||||++++ .+.++.+ ++
T Consensus        19 ~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~--~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evln   96 (375)
T KOG0591|consen   19 ADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFG--MMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLN   96 (375)
T ss_pred             HHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchh--hccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhH
Confidence            3566678999999999999995 79999999999522  233445678999999999999999999999 4555555 89


Q ss_pred             EEEeeCCCCChhhhhhcC--CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCC--eeecCCCccceeeCCCCCceeccceee
Q 003296          632 LFYEYAPKGTLFDVLHGC--LENALDWASRYSIAVGVAQGLAFLHGFTSNP--ILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                      ||||||.+|||...++..  .+..+++.++++++.|+++||.++|.-. ++  |+||||||.||+++.+|.+|++|||++
T Consensus        97 ivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~-~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~  175 (375)
T KOG0591|consen   97 IVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKI-PRGTVMHRDIKPANIFLTANGVVKLGDFGLG  175 (375)
T ss_pred             HHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccc-cccceeeccCcchheEEcCCCceeeccchhH
Confidence            999999999999999743  2457999999999999999999999522 44  999999999999999999999999999


Q ss_pred             eeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc
Q 003296          708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (833)
                      +.+....  ....+.+|||.||+||.+.+.+|+.||||||+||++|||+.-++||.+. ...+...... ++        
T Consensus       176 r~l~s~~--tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~-n~~~L~~KI~-qg--------  243 (375)
T KOG0591|consen  176 RFLSSKT--TFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGD-NLLSLCKKIE-QG--------  243 (375)
T ss_pred             hHhcchh--HHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccc-cHHHHHHHHH-cC--------
Confidence            9886433  2345789999999999999999999999999999999999999999876 3333322211 11        


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLL  830 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~  830 (833)
                       +.++.  .....+.++.+++..|++.||+.||+.-..++.++
T Consensus       244 -d~~~~--p~~~YS~~l~~li~~ci~vd~~~RP~t~~~v~di~  283 (375)
T KOG0591|consen  244 -DYPPL--PDEHYSTDLRELINMCIAVDPEQRPDTVPYVQDIQ  283 (375)
T ss_pred             -CCCCC--cHHHhhhHHHHHHHHHccCCcccCCCcchHHHHHH
Confidence             11111  12356778899999999999999999655555543

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-48  Score=390.39  Aligned_cols=245  Identities=21%  Similarity=0.267  Sum_probs=208.1

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      -++|+..++||+|+||+||.++. ++++.+|+|+++ +++....++.+...+|..||.+++||.||+++..|++.+.+|+
T Consensus        24 ~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~-K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLyl  102 (357)
T KOG0598|consen   24 PDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLK-KKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYL  102 (357)
T ss_pred             hhheeeeeeeeccCCceEEEEEEcccCceeehhhhh-hhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEE
Confidence            45788999999999999999986 589999999994 5555566677889999999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      |+||+.||+|+.+|.+  ++.+++.++..++.+|+.||.|||   +.+|||||+||+|||||++|+++++|||+|+....
T Consensus       103 Vld~~~GGeLf~hL~~--eg~F~E~~arfYlaEi~lAL~~LH---~~gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~~  177 (357)
T KOG0598|consen  103 VLDYLNGGELFYHLQR--EGRFSEDRARFYLAEIVLALGYLH---SKGIIYRDLKPENILLDEQGHIKLTDFGLCKEDLK  177 (357)
T ss_pred             EEeccCCccHHHHHHh--cCCcchhHHHHHHHHHHHHHHHHH---hCCeeeccCCHHHeeecCCCcEEEeccccchhccc
Confidence            9999999999999986  567899999999999999999999   89999999999999999999999999999996543


Q ss_pred             CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      ...  .+.++|||+.|||||++.+..|+..+|+||+||++|||++|.+||.+.+. ..+........          ...
T Consensus       178 ~~~--~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~~-~~~~~~I~~~k----------~~~  244 (357)
T KOG0598|consen  178 DGD--ATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAEDV-KKMYDKILKGK----------LPL  244 (357)
T ss_pred             CCC--ccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCccH-HHHHHHHhcCc----------CCC
Confidence            332  33568999999999999999999999999999999999999999975442 33333222221          111


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCC
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARP  820 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rp  820 (833)
                      .+   .-...++.+++.+.+..||++|.
T Consensus       245 ~p---~~ls~~ardll~~LL~rdp~~RL  269 (357)
T KOG0598|consen  245 PP---GYLSEEARDLLKKLLKRDPRQRL  269 (357)
T ss_pred             CC---ccCCHHHHHHHHHHhccCHHHhc
Confidence            11   11345678999999999999995

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=1.4e-46  Score=364.32  Aligned_cols=264  Identities=15%  Similarity=0.204  Sum_probs=209.6

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      .|+....+|+|+||+||||+.+ +|+.||||++....  .+....+-..|||++|++++|||+|.++++|......+||+
T Consensus         3 kYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Ese--dd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVF   80 (396)
T KOG0593|consen    3 KYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESE--DDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVF   80 (396)
T ss_pred             HHhhhhccccCcceEEEEeccCCcccEEEEEeeccCC--ccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEe
Confidence            4677789999999999999974 89999999994221  22334566789999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      |||+. ++.+-|... ...++.....+|+.|+++|+.|+|   ++++|||||||+|||++.++.+|+||||+|+.+....
T Consensus        81 E~~dh-TvL~eLe~~-p~G~~~~~vk~~l~Q~l~ai~~cH---k~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pg  155 (396)
T KOG0593|consen   81 EYCDH-TVLHELERY-PNGVPSELVKKYLYQLLKAIHFCH---KNNCIHRDIKPENILITQNGVVKLCDFGFARTLSAPG  155 (396)
T ss_pred             eecch-HHHHHHHhc-cCCCCHHHHHHHHHHHHHHhhhhh---hcCeecccCChhheEEecCCcEEeccchhhHhhcCCc
Confidence            99988 555555433 345899999999999999999999   8899999999999999999999999999999886322


Q ss_pred             CCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccc---ccccc--
Q 003296          715 STGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLD---HILDF--  788 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~--  788 (833)
                        ...+..+.|.+|.|||.+.+ .+|+..+||||.||++.||++|.+-|.+..++++.......-++-+.   .++..  
T Consensus       156 --d~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~  233 (396)
T KOG0593|consen  156 --DNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNP  233 (396)
T ss_pred             --chhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccCC
Confidence              13356789999999999887 68999999999999999999999999988888776544332222111   11111  


Q ss_pred             --------cccCCc---hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          789 --------NVSRTS---LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       789 --------~~~~~~---~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                              ......   ........-+++++..|++.||++|++.+|++.|
T Consensus       234 ~F~Gv~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll~H  284 (396)
T KOG0593|consen  234 FFHGVRLPEPEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLLHH  284 (396)
T ss_pred             ceeeeecCCCCCccchhhhcccchHHHHHHHHHHhcCCccccccHHHHhcC
Confidence                    000000   0111234468899999999999999999998865

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-46  Score=393.42  Aligned_cols=251  Identities=22%  Similarity=0.310  Sum_probs=208.1

Q ss_pred             CccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCC
Q 003296          559 PLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       559 ~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~  638 (833)
                      ..+.||+|-||.||.|.+.....||||.++..     ....++|.+|+++|++++|+|||+++|+|..++.+|||||||+
T Consensus       210 l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~-----~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~  284 (468)
T KOG0197|consen  210 LIRELGSGQFGEVWLGKWNGSTKVAVKTIKEG-----SMSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMP  284 (468)
T ss_pred             HHHHhcCCccceEEEEEEcCCCcccceEEecc-----ccChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEecc
Confidence            34689999999999999988889999999532     2235789999999999999999999999999999999999999


Q ss_pred             CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCc
Q 003296          639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS  718 (833)
Q Consensus       639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~  718 (833)
                      .|+|.++|+...+..+.-.+.+.++.|||+|++||+   ++++|||||.++|||++++..+||+|||+||....+..+..
T Consensus       285 ~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLe---s~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~~~  361 (468)
T KOG0197|consen  285 KGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLE---SKNYIHRDLAARNILVDEDLVVKISDFGLARLIGDDEYTAS  361 (468)
T ss_pred             cCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHH---hCCccchhhhhhheeeccCceEEEcccccccccCCCceeec
Confidence            999999999766678999999999999999999999   88999999999999999999999999999996554443221


Q ss_pred             cccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCCchhH
Q 003296          719 LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAV  797 (833)
Q Consensus       719 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  797 (833)
                       ....-...|.|||.+..++++.|||||||||+||||+| |+.||.+.. ..+.+ .....+.++.        .    +
T Consensus       362 -~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~ms-n~ev~-~~le~GyRlp--------~----P  426 (468)
T KOG0197|consen  362 -EGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMS-NEEVL-ELLERGYRLP--------R----P  426 (468)
T ss_pred             -CCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCC-HHHHH-HHHhccCcCC--------C----C
Confidence             22233568999999999999999999999999999998 788886433 22222 2222222221        1    1


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          798 RSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       798 ~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ..++.++-+++..||..+|++|||++.+...|+++
T Consensus       427 ~~CP~~vY~lM~~CW~~~P~~RPtF~~L~~~l~~~  461 (468)
T KOG0197|consen  427 EGCPDEVYELMKSCWHEDPEDRPTFETLREVLEDF  461 (468)
T ss_pred             CCCCHHHHHHHHHHhhCCcccCCCHHHHHHHHHHh
Confidence            24566888999999999999999999998888765

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=6.7e-46  Score=386.97  Aligned_cols=256  Identities=22%  Similarity=0.309  Sum_probs=216.1

Q ss_pred             HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCc
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDS  629 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~  629 (833)
                      ..-++|.+.+.||+|+|++||+|+. .++++||||++. +.-...+...+-..+|-.+|.+| .||.||+++..|+++..
T Consensus        70 k~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~-K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~s  148 (604)
T KOG0592|consen   70 KTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLD-KRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEES  148 (604)
T ss_pred             CChhhcchhheeccccceeEEEeeecCCCceeeHhhhh-HHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccc
Confidence            3346788899999999999999996 589999999994 44444455567788999999999 79999999999999999


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                      +|+|+||+++|+|.+++++  .+.+++...+.+|.+|+.||+|||   +++||||||||+|||+|++|++||+|||-|+.
T Consensus       149 LYFvLe~A~nGdll~~i~K--~Gsfde~caR~YAAeIldAleylH---~~GIIHRDlKPENILLd~dmhikITDFGsAK~  223 (604)
T KOG0592|consen  149 LYFVLEYAPNGDLLDLIKK--YGSFDETCARFYAAEILDALEYLH---SNGIIHRDLKPENILLDKDGHIKITDFGSAKI  223 (604)
T ss_pred             eEEEEEecCCCcHHHHHHH--hCcchHHHHHHHHHHHHHHHHHHH---hcCceeccCChhheeEcCCCcEEEeecccccc
Confidence            9999999999999999997  467898889999999999999999   89999999999999999999999999999998


Q ss_pred             eCCCCCC---------Cc--cccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcc
Q 003296          710 IDPSKST---------GS--LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQ  778 (833)
Q Consensus       710 ~~~~~~~---------~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~  778 (833)
                      +.+....         ..  ..+++||..|.+||++.....+..+|+|+|||++|+|+.|++||.+.++.......... 
T Consensus       224 l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~NeyliFqkI~~l-  302 (604)
T KOG0592|consen  224 LSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANEYLIFQKIQAL-  302 (604)
T ss_pred             CChhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHh-
Confidence            8643221         11  14689999999999999999999999999999999999999999987765433222111 


Q ss_pred             cccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          779 QDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                              +..++.      ..++.+.+|+.+.|..||.+|+|.+||-+|
T Consensus       303 --------~y~fp~------~fp~~a~dLv~KLLv~dp~~Rlt~~qIk~H  338 (604)
T KOG0592|consen  303 --------DYEFPE------GFPEDARDLIKKLLVRDPSDRLTSQQIKAH  338 (604)
T ss_pred             --------cccCCC------CCCHHHHHHHHHHHccCccccccHHHHhhC
Confidence                    111111      223567899999999999999999998776

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-45  Score=386.57  Aligned_cols=250  Identities=20%  Similarity=0.276  Sum_probs=212.6

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ..|.....||+|+.|.||.|.. .+++.||||++....    ....+-...|+.+|+..+|+|||.+++.|...+++|.|
T Consensus       273 ~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~----Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVV  348 (550)
T KOG0578|consen  273 SKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRK----QPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVV  348 (550)
T ss_pred             hhhcchhhhccccccceeeeeeccCCceEEEEEEEecc----CCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEE
Confidence            3456677899999999999985 589999999995222    23345678999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||||++|+|.|++..   ..+++.++..|+.++++||+|||   ..+|+|||||.+|||++.+|.+||+|||+|..+...
T Consensus       349 MEym~ggsLTDvVt~---~~~~E~qIA~Icre~l~aL~fLH---~~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~  422 (550)
T KOG0578|consen  349 MEYMEGGSLTDVVTK---TRMTEGQIAAICREILQGLKFLH---ARGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEE  422 (550)
T ss_pred             EeecCCCchhhhhhc---ccccHHHHHHHHHHHHHHHHHHH---hcceeeeccccceeEeccCCcEEEeeeeeeeccccc
Confidence            999999999999985   35899999999999999999999   889999999999999999999999999999988655


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      ..  .-.+.+|||+|||||++....|++|+||||+|++++||+-|++||-.+..+..........        .+.+   
T Consensus       423 ~~--KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~PlrAlyLIa~ng--------~P~l---  489 (550)
T KOG0578|consen  423 QS--KRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNG--------TPKL---  489 (550)
T ss_pred             cC--ccccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCCChHHHHHHHhhcC--------CCCc---
Confidence            43  2367899999999999999999999999999999999999999998766655433222111        1111   


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                       ......+..+.+++.+||+.||++||++.|+|+|
T Consensus       490 -k~~~klS~~~kdFL~~cL~~dv~~RasA~eLL~H  523 (550)
T KOG0578|consen  490 -KNPEKLSPELKDFLDRCLVVDVEQRASAKELLEH  523 (550)
T ss_pred             -CCccccCHHHHHHHHHHhhcchhcCCCHHHHhcC
Confidence             1233556788999999999999999999999986

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=5.8e-45  Score=376.90  Aligned_cols=265  Identities=20%  Similarity=0.256  Sum_probs=213.3

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC--Cce
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS--DSA  630 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~--~~~  630 (833)
                      .+.|+..+.||+|+||.||||+. .+|+.||+|++....  .+.+...-..|||.||++++|||||++.+...+.  ..+
T Consensus       116 ~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~--~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~si  193 (560)
T KOG0600|consen  116 ADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDN--EKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSI  193 (560)
T ss_pred             hHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeeccc--CCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceE
Confidence            44566678999999999999996 689999999995321  2334456678999999999999999999999877  689


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      |||+|||+. ||.-++... ...++..+++.++.|++.||+|||   .++|+|||||.+|||||.+|.+||+|||+|++.
T Consensus       194 YlVFeYMdh-DL~GLl~~p-~vkft~~qIKc~mkQLl~Gl~~cH---~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y  268 (560)
T KOG0600|consen  194 YLVFEYMDH-DLSGLLSSP-GVKFTEPQIKCYMKQLLEGLEYCH---SRGVLHRDIKGSNILIDNNGVLKIADFGLARFY  268 (560)
T ss_pred             EEEEecccc-hhhhhhcCC-CcccChHHHHHHHHHHHHHHHHHh---hcCeeeccccccceEEcCCCCEEeccccceeec
Confidence            999999998 999888752 346999999999999999999999   899999999999999999999999999999988


Q ss_pred             CCCCCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc-
Q 003296          711 DPSKSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF-  788 (833)
Q Consensus       711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-  788 (833)
                      ...... ..+..+-|.+|.|||.+.+. .|+.++|+||.|||+.||++|++.|.+..++.+.-......+..-++. .+ 
T Consensus       269 ~~~~~~-~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kIfklcGSP~e~~-W~~  346 (560)
T KOG0600|consen  269 TPSGSA-PYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKIFKLCGSPTEDY-WPV  346 (560)
T ss_pred             cCCCCc-ccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHHHHHhCCCChhc-ccc
Confidence            765533 34566779999999998865 699999999999999999999999998887776544333222111111 11 


Q ss_pred             -ccc-----CC--------chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 003296          789 -NVS-----RT--------SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLR  827 (833)
Q Consensus       789 -~~~-----~~--------~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~  827 (833)
                       .++     .+        .+.....+..+++|+..+|..||.+|.|+.++++
T Consensus       347 ~kLP~~~~~kp~~~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~  399 (560)
T KOG0600|consen  347 SKLPHATIFKPQQPYKRRLRETFKDFPASALDLLEKLLSLDPDKRGTASSALQ  399 (560)
T ss_pred             ccCCcccccCCCCcccchHHHHhccCCHHHHHHHHHHhccCccccccHHHHhc
Confidence             000     00        0112233567889999999999999999999886

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-44  Score=368.21  Aligned_cols=263  Identities=18%  Similarity=0.249  Sum_probs=213.5

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..++||.|.-++||+|.. +.+..||||++. -++.  ..+.+...+|+..|+.++|||||+++..|..+..+|+|
T Consensus        26 ~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~in-LEkc--~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvV  102 (516)
T KOG0582|consen   26 KDYELQEVIGVGASAVVYLARCIPTNEVVAIKIIN-LEKC--NNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVV  102 (516)
T ss_pred             cceeEEEEEeccceeEeeeeeecccCCEEEEEEee-hhhh--hhhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEe
Confidence            4688889999999999999995 789999999994 2222  22367899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |.||.+||+.++++..-...+++..+..|.+++++||.|||   .++-||||||+.|||||.+|.+|++|||.+..+...
T Consensus       103 mpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH---~~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~  179 (516)
T KOG0582|consen  103 MPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLH---QNGHIHRDVKAGNILIDSDGTVKLADFGVSASLFDS  179 (516)
T ss_pred             ehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHH---hcCceecccccccEEEcCCCcEEEcCceeeeeeccc
Confidence            99999999999998765567999999999999999999999   889999999999999999999999999997766443


Q ss_pred             CCCC--cccccccccccccccccc--CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          714 KSTG--SLSTVAGSVGYIPPEYAY--TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       714 ~~~~--~~~~~~gt~~y~aPE~~~--~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      ....  ...+++||++|||||++.  ...|+.|+||||||++..|+.+|..||..-..+.-...........+.-     
T Consensus       180 G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPmkvLl~tLqn~pp~~~t-----  254 (516)
T KOG0582|consen  180 GDRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPPMKVLLLTLQNDPPTLLT-----  254 (516)
T ss_pred             CceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCCCCCccc-----
Confidence            3221  114679999999999954  3469999999999999999999999998655444333333322221110     


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ..............+.+++..||++||++|||+++++++
T Consensus       255 ~~~~~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlkh  293 (516)
T KOG0582|consen  255 SGLDKDEDKKFSKSFREMIALCLVKDPSKRPTASKLLKH  293 (516)
T ss_pred             ccCChHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhcc
Confidence            001112223445688899999999999999999999875

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-45  Score=378.43  Aligned_cols=266  Identities=16%  Similarity=0.205  Sum_probs=216.1

Q ss_pred             HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCC-
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASD-  628 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~-  628 (833)
                      ...+.|...+.+|.|+||.||+|+. .+|..||||+++++-.. .  +.-.=.||++.|++++ |||||++.+++.+.+ 
T Consensus         7 ~~m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s-~--ee~~nLREvksL~kln~hpniikL~Evi~d~~~   83 (538)
T KOG0661|consen    7 IFMDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYS-W--EECMNLREVKSLRKLNPHPNIIKLKEVIRDNDR   83 (538)
T ss_pred             hHHHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhcc-H--HHHHHHHHHHHHHhcCCCCcchhhHHHhhccCc
Confidence            3456777889999999999999995 68999999999533211 1  1122368999999999 999999999999988 


Q ss_pred             ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeee
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK  708 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~  708 (833)
                      .+|+|||||+. +|+++++++ ...+++..++.|+.||++||+|+|   .+|+.|||+||+|||+.....+||+|||+||
T Consensus        84 ~L~fVfE~Md~-NLYqLmK~R-~r~fse~~irnim~QilqGL~hiH---k~GfFHRDlKPENiLi~~~~~iKiaDFGLAR  158 (538)
T KOG0661|consen   84 ILYFVFEFMDC-NLYQLMKDR-NRLFSESDIRNIMYQILQGLAHIH---KHGFFHRDLKPENILISGNDVIKIADFGLAR  158 (538)
T ss_pred             eEeeeHHhhhh-hHHHHHhhc-CCcCCHHHHHHHHHHHHHHHHHHH---hcCcccccCChhheEecccceeEeccccccc
Confidence            89999999987 999999986 678999999999999999999999   8999999999999999988999999999999


Q ss_pred             eeCCCCCCCcccccccccccccccccc-CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccc---
Q 003296          709 VIDPSKSTGSLSTVAGSVGYIPPEYAY-TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDH---  784 (833)
Q Consensus       709 ~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~---  784 (833)
                      .+....   ..+..+.|.+|.|||++. .+-|+.+.||||+|||++|+.+-++-|.+.+++++.......-+....+   
T Consensus       159 ev~Skp---PYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~  235 (538)
T KOG0661|consen  159 EVRSKP---PYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICEVLGTPDKDSWP  235 (538)
T ss_pred             ccccCC---CcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhCCCccccch
Confidence            876443   346789999999999876 5669999999999999999999999999988888765544332221111   


Q ss_pred             -------cccccccCCch-----hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          785 -------ILDFNVSRTSL-----AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       785 -------~~~~~~~~~~~-----~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                             .+...++....     -......++++++.+|+++||++|||++|+++|
T Consensus       236 eg~~La~~mnf~~P~~~~~~l~~L~p~~s~~~~~li~~ll~WDP~kRpTA~~al~~  291 (538)
T KOG0661|consen  236 EGYNLASAMNFRFPQVKPSPLKDLLPNASSEAASLIERLLAWDPDKRPTASQALQH  291 (538)
T ss_pred             hHHHHHHHhccCCCcCCCCChHHhCcccCHHHHHHHHHHhcCCCccCccHHHHhcC
Confidence                   11111111110     011256789999999999999999999999875

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=2.8e-44  Score=342.88  Aligned_cols=264  Identities=19%  Similarity=0.226  Sum_probs=213.3

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      .|...+.+|+|.||.||+|.+ .+|+.||||+++..  ....+-.....|||+.|+.++|||||.++++|...+.+-||+
T Consensus         3 rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~--~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVf   80 (318)
T KOG0659|consen    3 RYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLG--NAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVF   80 (318)
T ss_pred             hhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeecc--ccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEE
Confidence            466678999999999999996 58999999999533  223344567899999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      |||+. ||+.+++.. ...+...+++.++.++.+|++|||   ...|+|||+||.|+|++++|.+|++|||+|+......
T Consensus        81 Efm~t-dLe~vIkd~-~i~l~pa~iK~y~~m~LkGl~y~H---~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~  155 (318)
T KOG0659|consen   81 EFMPT-DLEVVIKDK-NIILSPADIKSYMLMTLKGLAYCH---SKWILHRDLKPNNLLISSDGQLKIADFGLARFFGSPN  155 (318)
T ss_pred             Eeccc-cHHHHhccc-ccccCHHHHHHHHHHHHHHHHHHH---hhhhhcccCCccceEEcCCCcEEeecccchhccCCCC
Confidence            99987 999999864 457899999999999999999999   8889999999999999999999999999999886544


Q ss_pred             CCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccc-------ccccc
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDK-------LDHIL  786 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~-------~~~~~  786 (833)
                      ...  +..+-|..|.|||.+.+. .|+..+||||.|||+.||+-|.+-|.+..++++.......-+..       +..+-
T Consensus       156 ~~~--~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQL~~If~~LGTP~~~~WP~~~~lp  233 (318)
T KOG0659|consen  156 RIQ--THQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQLSKIFRALGTPTPDQWPEMTSLP  233 (318)
T ss_pred             ccc--ccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHHHHHHHHHHcCCCCcccCccccccc
Confidence            322  233679999999988764 59999999999999999999998888888888765544332211       11111


Q ss_pred             ccc----ccCCc--hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          787 DFN----VSRTS--LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       787 ~~~----~~~~~--~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      |..    .+.+.  .-.......+++++.+++..||.+|+|++|+++|
T Consensus       234 dY~~~~~~P~~~~~~lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~~  281 (318)
T KOG0659|consen  234 DYVKIQQFPKPPLNNLFPAASSDALDLLSKMLTYNPKKRITASQALKH  281 (318)
T ss_pred             cHHHHhcCCCCccccccccccHHHHHHHHhhhccCchhcccHHHHhcc
Confidence            111    00000  0122345677999999999999999999999876

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=7.3e-45  Score=373.92  Aligned_cols=253  Identities=23%  Similarity=0.332  Sum_probs=202.2

Q ss_pred             cCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC--ceEEE
Q 003296          557 ANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD--SAYLF  633 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~--~~~lv  633 (833)
                      +...+.||+|+||+||.+... +|...|||.+....    ....+...+|+++|++++|||||+++|.....+  .+++.
T Consensus        19 ~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~----~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~   94 (313)
T KOG0198|consen   19 WSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELED----SPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIF   94 (313)
T ss_pred             hhhhccccCccceEEEEEEecCCCcceeeeeeeccc----chhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEee
Confidence            445689999999999999975 59999999994221    111566899999999999999999999866555  69999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC-CCCceeccceeeeeeCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS-LKEPQIGDIELCKVIDP  712 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~-~~~~ki~dfgl~~~~~~  712 (833)
                      |||+++|+|.+++.+.+. .+++..+..++.||++||+|||   +++||||||||+|||++. ++.+||+|||.++....
T Consensus        95 mEy~~~GsL~~~~~~~g~-~l~E~~v~~ytr~iL~GL~ylH---s~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~  170 (313)
T KOG0198|consen   95 MEYAPGGSLSDLIKRYGG-KLPEPLVRRYTRQILEGLAYLH---SKGIVHCDIKPANILLDPSNGDVKLADFGLAKKLES  170 (313)
T ss_pred             eeccCCCcHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHH---hCCEeccCcccceEEEeCCCCeEEeccCcccccccc
Confidence            999999999999997544 7999999999999999999999   889999999999999999 79999999999987753


Q ss_pred             C-CCCCccccccccccccccccccCCc-ccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296          713 S-KSTGSLSTVAGSVGYIPPEYAYTMR-VTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       713 ~-~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                      . ..........||+.|||||++..+. ...++||||+||++.||+||++||.+......+........ ..     |.+
T Consensus       171 ~~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~~~~~~~~~~ig~~~-~~-----P~i  244 (313)
T KOG0198|consen  171 KGTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEFFEEAEALLLIGRED-SL-----PEI  244 (313)
T ss_pred             ccccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhhcchHHHHHHHhccC-CC-----CCC
Confidence            1 1111234578999999999998533 33599999999999999999999975322233332222221 11     111


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML  829 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L  829 (833)
                            +...+.++.+++.+|++.||++||||+|+++|-
T Consensus       245 ------p~~ls~~a~~Fl~~C~~~~p~~Rpta~eLL~hp  277 (313)
T KOG0198|consen  245 ------PDSLSDEAKDFLRKCFKRDPEKRPTAEELLEHP  277 (313)
T ss_pred             ------CcccCHHHHHHHHHHhhcCcccCcCHHHHhhCh
Confidence                  123455788999999999999999999999874

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=1.4e-45  Score=383.90  Aligned_cols=248  Identities=21%  Similarity=0.282  Sum_probs=211.5

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|...+.||+|+||+||||+.+ +++.||+|.+.+..+  ..++.+...+|++|+++++|||||.++++|+...++|+|.
T Consensus         3 ~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr--~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVt   80 (808)
T KOG0597|consen    3 QYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGR--NEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVT   80 (808)
T ss_pred             chhHHHHhcCCccceeeecccccceeEEEEEEehhcCC--chHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEe
Confidence            5666789999999999999975 789999999954333  2345677999999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      |||.| +|+.+|..  .+.+++..+..++.+++.||.|||   +.+|+|||+||.|||++..+.+|++|||+|+.+... 
T Consensus        81 e~a~g-~L~~il~~--d~~lpEe~v~~~a~~LVsaL~yLh---s~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~-  153 (808)
T KOG0597|consen   81 EYAVG-DLFTILEQ--DGKLPEEQVRAIAYDLVSALYYLH---SNRILHRDMKPQNILLEKGGTLKLCDFGLARAMSTN-  153 (808)
T ss_pred             hhhhh-hHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHH---hcCcccccCCcceeeecCCCceeechhhhhhhcccC-
Confidence            99977 99999986  567999999999999999999999   899999999999999999999999999999988653 


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCc
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS  794 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (833)
                       +...+.+.|||.|||||++.++.|+..+|.||+||++|||.+|++||.. .++.+.+.....+..          .   
T Consensus       154 -t~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a-~si~~Lv~~I~~d~v----------~---  218 (808)
T KOG0597|consen  154 -TSVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYA-RSITQLVKSILKDPV----------K---  218 (808)
T ss_pred             -ceeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhcCCC----------C---
Confidence             3345678999999999999999999999999999999999999999963 334444443333211          1   


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          795 LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       795 ~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                       .+......+..++...+.+||.+|.|..+++.|
T Consensus       219 -~p~~~S~~f~nfl~gLL~kdP~~RltW~~Ll~H  251 (808)
T KOG0597|consen  219 -PPSTASSSFVNFLQGLLIKDPAQRLTWTDLLGH  251 (808)
T ss_pred             -CcccccHHHHHHHHHHhhcChhhcccHHHHhcC
Confidence             112445678889999999999999999998765

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=9.6e-45  Score=341.23  Aligned_cols=252  Identities=20%  Similarity=0.280  Sum_probs=216.0

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      -++|+..+.+|+|.||.||.|.. +++..||+|++ .+......+..+++.+|++|-+.++||||.++|+||.+....||
T Consensus        21 l~dfeigr~LgkgkFG~vYlarekks~~IvalKVl-fKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyL   99 (281)
T KOG0580|consen   21 LDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVL-FKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYL   99 (281)
T ss_pred             hhhccccccccCCccccEeEeeeccCCcEEEEeee-eHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEE
Confidence            35788999999999999999996 57899999999 55566667778899999999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ++||.+.|+++..|.+.....+++.....++.|+|.|+.|+|   .++||||||||+|+|++..+..|++|||.+.....
T Consensus       100 ilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h---~k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p~  176 (281)
T KOG0580|consen  100 ILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCH---LKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS  176 (281)
T ss_pred             EEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhc---cCCcccCCCCHHHhccCCCCCeeccCCCceeecCC
Confidence            999999999999999766667888889999999999999999   89999999999999999999999999999876542


Q ss_pred             CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      ..    -.+.|||..|.|||...+..++.++|+|++||+.||++.|.+||........+....           ..++..
T Consensus       177 ~k----R~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~etYkrI~-----------k~~~~~  241 (281)
T KOG0580|consen  177 NK----RKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSHSETYKRIR-----------KVDLKF  241 (281)
T ss_pred             CC----ceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhhHHHHHHHH-----------HccccC
Confidence            22    257899999999999999999999999999999999999999998544222221111           111111


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      +    ......+.++|.+|+..+|.+|.+..||+.|
T Consensus       242 p----~~is~~a~dlI~~ll~~~p~~r~~l~~v~~h  273 (281)
T KOG0580|consen  242 P----STISGGAADLISRLLVKNPIERLALTEVMDH  273 (281)
T ss_pred             C----cccChhHHHHHHHHhccCccccccHHHHhhh
Confidence            1    2344578899999999999999999999876

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-44  Score=348.64  Aligned_cols=239  Identities=21%  Similarity=0.271  Sum_probs=205.7

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+....+|.|+||+|..++.+ +|.-+|+|+++ +.+..+.+..+....|..+|+.+.||.+|++++.|.+.+.+|+|
T Consensus        44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~-k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymv  122 (355)
T KOG0616|consen   44 QDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLD-KQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMV  122 (355)
T ss_pred             hhhhheeeeccCccceEEEEEEccCCceeehhhcC-HHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEE
Confidence            46778899999999999999974 78999999994 55555556677889999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||.+||.|+.++++  .+.+++..++.+|.||+.|++|||   +..|++||+||+|||+|++|.+||.|||+|+.... 
T Consensus       123 meyv~GGElFS~Lrk--~~rF~e~~arFYAAeivlAleylH---~~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~-  196 (355)
T KOG0616|consen  123 MEYVPGGELFSYLRK--SGRFSEPHARFYAAEIVLALEYLH---SLDIIYRDLKPENLLLDQNGHIKITDFGFAKRVSG-  196 (355)
T ss_pred             EeccCCccHHHHHHh--cCCCCchhHHHHHHHHHHHHHHHH---hcCeeeccCChHHeeeccCCcEEEEeccceEEecC-
Confidence            999999999999997  456899999999999999999999   88999999999999999999999999999998753 


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                          .+.+.||||.|+|||++....|..++|+|||||++|||+.|.+||.+.+.+.-+-           +++...+.-+
T Consensus       197 ----rT~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~~~iY~-----------KI~~~~v~fP  261 (355)
T KOG0616|consen  197 ----RTWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNPIQIYE-----------KILEGKVKFP  261 (355)
T ss_pred             ----cEEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCChHHHHH-----------HHHhCcccCC
Confidence                2467899999999999999999999999999999999999999998776643322           2222222221


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCC
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEAR  819 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~R  819 (833)
                          .-...++.+|+.+.++.|-.+|
T Consensus       262 ----~~fs~~~kdLl~~LL~vD~t~R  283 (355)
T KOG0616|consen  262 ----SYFSSDAKDLLKKLLQVDLTKR  283 (355)
T ss_pred             ----cccCHHHHHHHHHHHhhhhHhh
Confidence                1234567789999999999888

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=1.7e-44  Score=377.23  Aligned_cols=258  Identities=16%  Similarity=0.184  Sum_probs=210.7

Q ss_pred             HHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~  631 (833)
                      ..++|+...+||+|+||.||.|+- .+|..+|+|+++ +.........+....|-.+|...++|+||+++..|++.+.+|
T Consensus       139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~Lk-KS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LY  217 (550)
T KOG0605|consen  139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILK-KSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLY  217 (550)
T ss_pred             CcccchhheeeccccceeEEEEEEccCCcEEeeeccc-HHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeE
Confidence            346788899999999999999996 589999999995 444445566788999999999999999999999999999999


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      |||||+||||+..+|..  ...+++..+..++.+.+.|+.-+|   ..++|||||||+|+|||..|++|++|||+|.-..
T Consensus       218 LiMEylPGGD~mTLL~~--~~~L~e~~arfYiaE~vlAI~~iH---~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~  292 (550)
T KOG0605|consen  218 LIMEYLPGGDMMTLLMR--KDTLTEDWARFYIAETVLAIESIH---QLGYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLD  292 (550)
T ss_pred             EEEEecCCccHHHHHHh--cCcCchHHHHHHHHHHHHHHHHHH---HcCcccccCChhheeecCCCCEeeccccccchhh
Confidence            99999999999999986  567888889999999999999999   8899999999999999999999999999985332


Q ss_pred             CC----------------------CCC-----C------------------ccccccccccccccccccCCcccccCcch
Q 003296          712 PS----------------------KST-----G------------------SLSTVAGSVGYIPPEYAYTMRVTMAGNVY  746 (833)
Q Consensus       712 ~~----------------------~~~-----~------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~  746 (833)
                      ..                      +..     .                  .....+|||.|||||++.+..|+..+|+|
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwW  372 (550)
T KOG0605|consen  293 KKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWW  372 (550)
T ss_pred             hhhhhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHH
Confidence            10                      000     0                  01135899999999999999999999999


Q ss_pred             hhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCC---CHH
Q 003296          747 SFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARP---KMK  823 (833)
Q Consensus       747 S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rp---s~~  823 (833)
                      |+|||+|||+.|-+||.+......|........ .+        ..+  .......++.|+|.+|+. ||++|.   .++
T Consensus       373 SLG~ImyEmLvGyPPF~s~tp~~T~rkI~nwr~-~l--------~fP--~~~~~s~eA~DLI~rll~-d~~~RLG~~G~~  440 (550)
T KOG0605|consen  373 SLGCIMYEMLVGYPPFCSETPQETYRKIVNWRE-TL--------KFP--EEVDLSDEAKDLITRLLC-DPENRLGSKGAE  440 (550)
T ss_pred             HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhh-hc--------cCC--CcCcccHHHHHHHHHHhc-CHHHhcCcccHH
Confidence            999999999999999998776665543322110 00        001  111234688999999999 999996   466


Q ss_pred             HHHHH
Q 003296          824 SVLRM  828 (833)
Q Consensus       824 evl~~  828 (833)
                      ||-+|
T Consensus       441 EIK~H  445 (550)
T KOG0605|consen  441 EIKKH  445 (550)
T ss_pred             HHhcC
Confidence            66543

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-44  Score=375.95  Aligned_cols=239  Identities=21%  Similarity=0.290  Sum_probs=199.6

Q ss_pred             ccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCCC
Q 003296          560 LNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPK  639 (833)
Q Consensus       560 ~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~  639 (833)
                      .+-+|.|+.|.||.|++ .+..||||+++           +.=..+|+-|++++||||+.+.|+|.....+|||||||+.
T Consensus       129 LeWlGSGaQGAVF~Grl-~netVAVKKV~-----------elkETdIKHLRkLkH~NII~FkGVCtqsPcyCIiMEfCa~  196 (904)
T KOG4721|consen  129 LEWLGSGAQGAVFLGRL-HNETVAVKKVR-----------ELKETDIKHLRKLKHPNIITFKGVCTQSPCYCIIMEFCAQ  196 (904)
T ss_pred             hhhhccCcccceeeeec-cCceehhHHHh-----------hhhhhhHHHHHhccCcceeeEeeeecCCceeEEeeecccc
Confidence            46899999999999998 68899999993           1123688999999999999999999999999999999999


Q ss_pred             CChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCcc
Q 003296          640 GTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL  719 (833)
Q Consensus       640 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~  719 (833)
                      |-|+.+|+.  ++.+.......|..+||.|+.|||   .+.|||||||+-||||..+..+||+|||.++......   ..
T Consensus       197 GqL~~VLka--~~~itp~llv~Wsk~IA~GM~YLH---~hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~S---Tk  268 (904)
T KOG4721|consen  197 GQLYEVLKA--GRPITPSLLVDWSKGIAGGMNYLH---LHKIIHRDLKSPNILISYDDVVKISDFGTSKELSDKS---TK  268 (904)
T ss_pred             ccHHHHHhc--cCccCHHHHHHHHHHhhhhhHHHH---HhhHhhhccCCCceEeeccceEEeccccchHhhhhhh---hh
Confidence            999999997  567888889999999999999999   7889999999999999999999999999998765432   23


Q ss_pred             ccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHH
Q 003296          720 STVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRS  799 (833)
Q Consensus       720 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  799 (833)
                      ..++||..|||||++...+.++|+||||||||||||+||..||.+-...+-    ..   +.-...+.-.+      +..
T Consensus       269 MSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssAI----Iw---GVGsNsL~Lpv------Pst  335 (904)
T KOG4721|consen  269 MSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSAI----IW---GVGSNSLHLPV------PST  335 (904)
T ss_pred             hhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccchhee----EE---eccCCcccccC------ccc
Confidence            568999999999999999999999999999999999999999974322110    00   11111111111      123


Q ss_pred             HHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          800 QMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       800 ~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                      ++..+.-|+..||+..|..||++++|+.||.=
T Consensus       336 cP~GfklL~Kqcw~sKpRNRPSFrqil~HldI  367 (904)
T KOG4721|consen  336 CPDGFKLLLKQCWNSKPRNRPSFRQILLHLDI  367 (904)
T ss_pred             CchHHHHHHHHHHhcCCCCCccHHHHHHHHhh
Confidence            45567778999999999999999999999863

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-44  Score=396.98  Aligned_cols=257  Identities=21%  Similarity=0.273  Sum_probs=208.8

Q ss_pred             HhcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~  628 (833)
                      .+-...+.||+|+||+||+|+..      +.+.||||.++..+.   .+.+++|.||+++|+.++|||||+++|+|..++
T Consensus       486 ~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~---~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~  562 (774)
T KOG1026|consen  486 SDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAE---NQARQDFRREAELLAELQHPNIVRLLGVCREGD  562 (774)
T ss_pred             hheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhccccc---HHHHHHHHHHHHHHHhccCCCeEEEEEEEccCC
Confidence            34456789999999999999853      357899999963332   235689999999999999999999999999999


Q ss_pred             ceEEEEeeCCCCChhhhhhcCC--------C----CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCL--------E----NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL  696 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~--------~----~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~  696 (833)
                      ..|+|+|||..|||.++|..+.        .    .+++..+.+.||.|||.|++||-   ++.+|||||-.+|+|+.++
T Consensus       563 P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs---~~~FVHRDLATRNCLVge~  639 (774)
T KOG1026|consen  563 PLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLS---SHHFVHRDLATRNCLVGEN  639 (774)
T ss_pred             eeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---hCcccccchhhhhceeccc
Confidence            9999999999999999997432        1    13889999999999999999999   7889999999999999999


Q ss_pred             CCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHh
Q 003296          697 KEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRN  775 (833)
Q Consensus       697 ~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~  775 (833)
                      ..+||+|||++|.....+.........=..+|||||.+..++||++||||||||||||++| |+.||.+-.+-  .+...
T Consensus       640 l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~--EVIe~  717 (774)
T KOG1026|consen  640 LVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQ--EVIEC  717 (774)
T ss_pred             eEEEecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccchH--HHHHH
Confidence            9999999999997754443322112233578999999999999999999999999999998 89999754321  12222


Q ss_pred             hcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          776 SAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                      ..++.         +   -+.++.++.++.+|+..||+..|++||+++||-..|+.
T Consensus       718 i~~g~---------l---L~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~~~L~~  761 (774)
T KOG1026|consen  718 IRAGQ---------L---LSCPENCPTEVYSLMLECWNENPKRRPSFKEIHSRLQA  761 (774)
T ss_pred             HHcCC---------c---ccCCCCCCHHHHHHHHHHhhcCcccCCCHHHHHHHHHH
Confidence            22211         1   11123567789999999999999999999999999885

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7e-44  Score=383.19  Aligned_cols=254  Identities=20%  Similarity=0.243  Sum_probs=208.0

Q ss_pred             HHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhh-ccChhHHHHHHHHHhcCC-CCCcccceEEEecCCc
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQ-LGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASDS  629 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~-~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~~  629 (833)
                      ....|...+.||+|+||+||.|.. .+|..||||.+.++..... ....+...+|+.++++++ ||||+++++++.....
T Consensus        15 ~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~   94 (370)
T KOG0583|consen   15 SIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPTK   94 (370)
T ss_pred             ccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCCe
Confidence            345678889999999999999986 5889999997743211101 134556778999999999 9999999999999999


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC-CCceeccceeee
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL-KEPQIGDIELCK  708 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~-~~~ki~dfgl~~  708 (833)
                      .|+|||||.+|+|++++.+  .+.+.+.++..++.|++.|++|||   +.+|+||||||+|||+|.+ +.+||+|||++.
T Consensus        95 ~~ivmEy~~gGdL~~~i~~--~g~l~E~~ar~~F~Qlisav~y~H---~~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~  169 (370)
T KOG0583|consen   95 IYIVMEYCSGGDLFDYIVN--KGRLKEDEARKYFRQLISAVAYCH---SRGIVHRDLKPENILLDGNEGNLKLSDFGLSA  169 (370)
T ss_pred             EEEEEEecCCccHHHHHHH--cCCCChHHHHHHHHHHHHHHHHHH---hCCEeeCCCCHHHEEecCCCCCEEEecccccc
Confidence            9999999999999999987  556888999999999999999999   8899999999999999999 999999999999


Q ss_pred             eeCCCCCCCccccccccccccccccccCCc-cc-ccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc
Q 003296          709 VIDPSKSTGSLSTVAGSVGYIPPEYAYTMR-VT-MAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL  786 (833)
Q Consensus       709 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~-~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  786 (833)
                      ...  .......+.+||+.|+|||++.+.. |+ .++||||+||+||.|++|+.||++.+... .........-.     
T Consensus       170 ~~~--~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~~~~-l~~ki~~~~~~-----  241 (370)
T KOG0583|consen  170 ISP--GEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSNVPN-LYRKIRKGEFK-----  241 (370)
T ss_pred             ccC--CCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCccHHH-HHHHHhcCCcc-----
Confidence            874  1122457899999999999999877 86 78999999999999999999998643322 11111111111     


Q ss_pred             cccccCCchhHHHH-HHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          787 DFNVSRTSLAVRSQ-MLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       787 ~~~~~~~~~~~~~~-~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                         ++.      .. +.++.+++.+|++.||.+|+|+.||+.+
T Consensus       242 ---~p~------~~~S~~~~~Li~~mL~~~P~~R~t~~~i~~h  275 (370)
T KOG0583|consen  242 ---IPS------YLLSPEARSLIEKMLVPDPSTRITLLEILEH  275 (370)
T ss_pred             ---CCC------CcCCHHHHHHHHHHcCCCcccCCCHHHHhhC
Confidence               111      11 5678899999999999999999999853

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=2.7e-43  Score=383.58  Aligned_cols=260  Identities=20%  Similarity=0.277  Sum_probs=203.8

Q ss_pred             HHhcCCccccccCcccEEEEEEc------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEec
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLA  626 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~  626 (833)
                      .+.|...+.||+|+||.||+|..      .++..||||+++...   .....+.+.+|+++++++ +|||||+++++|..
T Consensus         6 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~   82 (338)
T cd05102           6 RDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGA---TASEHKALMSELKILIHIGNHLNVVNLLGACTK   82 (338)
T ss_pred             hhHceeeeEeccCCcceEEEEEEeccCCcccchhhheecccccc---chHHHHHHHHHHHHHHHhccCcceeeEEeEecC
Confidence            45788889999999999999974      246789999994221   112346799999999999 89999999999876


Q ss_pred             C-CceEEEEeeCCCCChhhhhhcCC-------------------------------------------------------
Q 003296          627 S-DSAYLFYEYAPKGTLFDVLHGCL-------------------------------------------------------  650 (833)
Q Consensus       627 ~-~~~~lv~ey~~~g~L~~~l~~~~-------------------------------------------------------  650 (833)
                      . +..++||||+++|+|.+++....                                                       
T Consensus        83 ~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (338)
T cd05102          83 PNGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQE  162 (338)
T ss_pred             CCCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchh
Confidence            5 45899999999999999987431                                                       


Q ss_pred             -----CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCcccccccc
Q 003296          651 -----ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGS  725 (833)
Q Consensus       651 -----~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt  725 (833)
                           ...+++.++..++.|+++||+|||   +.+|+||||||+|||++.++.+|++|||+++...............++
T Consensus       163 ~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~  239 (338)
T cd05102         163 TDDLWKSPLTMEDLICYSFQVARGMEFLA---SRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLP  239 (338)
T ss_pred             ccccccCCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCC
Confidence                 124788899999999999999999   789999999999999999999999999999865432221122334567


Q ss_pred             ccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHH
Q 003296          726 VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTV  804 (833)
Q Consensus       726 ~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  804 (833)
                      +.|||||++.+..++.++|||||||++|||++ |+.||.+.......... .......      ..      ....+.++
T Consensus       240 ~~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~~~~~~-~~~~~~~------~~------~~~~~~~l  306 (338)
T cd05102         240 LKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINEEFCQR-LKDGTRM------RA------PENATPEI  306 (338)
T ss_pred             ccccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccHHHHHH-HhcCCCC------CC------CCCCCHHH
Confidence            89999999988889999999999999999997 99999754332222111 1111110      00      01223467


Q ss_pred             HHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          805 LKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       805 ~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .+++.+||+.||++|||+.|+++.|+++
T Consensus       307 ~~li~~cl~~dp~~RPs~~el~~~l~~~  334 (338)
T cd05102         307 YRIMLACWQGDPKERPTFSALVEILGDL  334 (338)
T ss_pred             HHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence            8999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=7.1e-44  Score=379.17  Aligned_cols=248  Identities=21%  Similarity=0.254  Sum_probs=210.2

Q ss_pred             cCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      ++..+.+|+|+-|.|-.|+. .+|+.+|||.+. +.............+||.+|+-+.||||+++|++|+...++|+|.|
T Consensus        14 wkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~-k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvlE   92 (786)
T KOG0588|consen   14 WKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIP-KRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVLE   92 (786)
T ss_pred             eeccccccCCCCceehhhhcccccceeEEEeec-cccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEEE
Confidence            45567899999999999996 699999999995 3322333345678999999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      |+++|.|++++-.  ++.+++.++.+++.||+.|+.|||   ..+|+|||+||+|+|||..+.+||+|||+|..-.++. 
T Consensus        93 yv~gGELFdylv~--kG~l~e~eaa~ff~QIi~gv~yCH---~~~icHRDLKpENlLLd~~~nIKIADFGMAsLe~~gk-  166 (786)
T KOG0588|consen   93 YVPGGELFDYLVR--KGPLPEREAAHFFRQILDGVSYCH---AFNICHRDLKPENLLLDVKNNIKIADFGMASLEVPGK-  166 (786)
T ss_pred             ecCCchhHHHHHh--hCCCCCHHHHHHHHHHHHHHHHHh---hhcceeccCCchhhhhhcccCEeeeccceeecccCCc-
Confidence            9999999999986  567999999999999999999999   7789999999999999999999999999998765443 


Q ss_pred             CCccccccccccccccccccCCccc-ccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCc
Q 003296          716 TGSLSTVAGSVGYIPPEYAYTMRVT-MAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS  794 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (833)
                        ...+.||+|.|.|||++.+.+|+ .++||||.|||||.|+||+.||+++ .+...........              .
T Consensus       167 --lLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDd-Nir~LLlKV~~G~--------------f  229 (786)
T KOG0588|consen  167 --LLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDD-NIRVLLLKVQRGV--------------F  229 (786)
T ss_pred             --cccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCc-cHHHHHHHHHcCc--------------c
Confidence              45678999999999999999996 8999999999999999999999854 3443333222111              1


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          795 LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       795 ~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ..+...+.++.+|+.+|+..||++|.|++||++|
T Consensus       230 ~MPs~Is~eaQdLLr~ml~VDp~~RiT~~eI~kH  263 (786)
T KOG0588|consen  230 EMPSNISSEAQDLLRRMLDVDPSTRITTEEILKH  263 (786)
T ss_pred             cCCCcCCHHHHHHHHHHhccCccccccHHHHhhC
Confidence            1112345678899999999999999999999987

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.4e-44  Score=365.08  Aligned_cols=250  Identities=20%  Similarity=0.289  Sum_probs=206.6

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ..|...+.||+|+||.||||.+ .+++.||+|.+.-   .......++..+|+.++++++||||.++||.|..+..++++
T Consensus        13 ~~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~L---e~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~Lwii   89 (467)
T KOG0201|consen   13 LLYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDL---EEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWII   89 (467)
T ss_pred             cccccchhccccccceeeeeeeccccceEEEEEech---hhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHH
Confidence            3466678999999999999997 5899999999942   22233457889999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||||.||++.+.++.  ...+++.....|++++..|+.|+|   ..+.+|||||+.|||+..+|.+|++|||++..+...
T Consensus        90 Mey~~gGsv~~lL~~--~~~~~E~~i~~ilre~l~~l~ylH---~~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~  164 (467)
T KOG0201|consen   90 MEYCGGGSVLDLLKS--GNILDEFEIAVILREVLKGLDYLH---SEKKIHRDIKAANILLSESGDVKLADFGVAGQLTNT  164 (467)
T ss_pred             HHHhcCcchhhhhcc--CCCCccceeeeehHHHHHHhhhhh---hcceecccccccceeEeccCcEEEEecceeeeeech
Confidence            999999999999985  344577778888999999999999   778999999999999999999999999999887644


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      ...  ..+++|||.|||||++.+..|+.|+||||+|++.+||++|.+|+.+...+.            ..-.+....++.
T Consensus       165 ~~r--r~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPmr------------vlflIpk~~PP~  230 (467)
T KOG0201|consen  165 VKR--RKTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPMR------------VLFLIPKSAPPR  230 (467)
T ss_pred             hhc--cccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcce------------EEEeccCCCCCc
Confidence            332  267899999999999998899999999999999999999999997533211            111111111111


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        ........+.+++..|+++||+.||++.++++|
T Consensus       231 --L~~~~S~~~kEFV~~CL~k~P~~RpsA~~LLKh  263 (467)
T KOG0201|consen  231 --LDGDFSPPFKEFVEACLDKNPEFRPSAKELLKH  263 (467)
T ss_pred             --cccccCHHHHHHHHHHhhcCcccCcCHHHHhhh
Confidence              111455678899999999999999999999986

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-43  Score=373.21  Aligned_cols=257  Identities=23%  Similarity=0.296  Sum_probs=204.8

Q ss_pred             cCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEee
Q 003296          557 ANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEY  636 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey  636 (833)
                      ......||+|+||+||||.+  -..||||.++.....  ....+.|..|+.++++-||.||+-++|||..++. .||..+
T Consensus       394 v~l~~rIGsGsFGtV~Rg~w--hGdVAVK~Lnv~~pt--~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~~-AIiTqw  468 (678)
T KOG0193|consen  394 VLLGERIGSGSFGTVYRGRW--HGDVAVKLLNVDDPT--PEQLQAFKNEVAVLKKTRHENILLFMGACMNPPL-AIITQW  468 (678)
T ss_pred             hhccceeccccccceeeccc--ccceEEEEEecCCCC--HHHHHHHHHHHHHHhhcchhhheeeehhhcCCce-eeeehh
Confidence            44568999999999999997  456999999643322  2256899999999999999999999999998777 999999


Q ss_pred             CCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCC
Q 003296          637 APKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST  716 (833)
Q Consensus       637 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~  716 (833)
                      |+|-+|+.++|.. +..++..+...||.|||+|+.|||   .++|||||+|+.||++.+++.|||+|||++..-......
T Consensus       469 CeGsSLY~hlHv~-etkfdm~~~idIAqQiaqGM~YLH---AK~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w~g~  544 (678)
T KOG0193|consen  469 CEGSSLYTHLHVQ-ETKFDMNTTIDIAQQIAQGMDYLH---AKNIIHRDLKSNNIFLHEDLKVKIGDFGLATVKTRWSGE  544 (678)
T ss_pred             ccCchhhhhccch-hhhhhHHHHHHHHHHHHHhhhhhh---hhhhhhhhccccceEEccCCcEEEecccceeeeeeeccc
Confidence            9999999999964 356899999999999999999999   899999999999999999999999999998654322222


Q ss_pred             CccccccccccccccccccC---CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          717 GSLSTVAGSVGYIPPEYAYT---MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       717 ~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      .......|...|||||+++.   .+|++.+||||||||+|||+||..||. .+...+.+.. ...+.     +.+   +.
T Consensus       545 ~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPys-i~~~dqIifm-VGrG~-----l~p---d~  614 (678)
T KOG0193|consen  545 QQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYS-IQNRDQIIFM-VGRGY-----LMP---DL  614 (678)
T ss_pred             cccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcC-CCChhheEEE-ecccc-----cCc---cc
Confidence            22344568899999999873   469999999999999999999999997 3332222111 11110     001   11


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .........++.+|+..||..+|++||.+.+|+..|+++
T Consensus       615 s~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l  653 (678)
T KOG0193|consen  615 SKIRSNCPKAMKRLLSDCWKFDREERPLFPQLLSKLEEL  653 (678)
T ss_pred             hhhhccCHHHHHHHHHHHHhcCcccCccHHHHHHHHHHh
Confidence            112234566888999999999999999999999987754

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-43  Score=380.61  Aligned_cols=246  Identities=22%  Similarity=0.274  Sum_probs=207.6

Q ss_pred             HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCCce
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASDSA  630 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~~~  630 (833)
                      ..++|....++|+|+||+|+.+..+ +++.+|||.++ ++.+....+.+....|.+|+.-.. ||.++.++++|+.++++
T Consensus       366 ~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LK-K~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l  444 (694)
T KOG0694|consen  366 TLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLK-KGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHL  444 (694)
T ss_pred             cccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEee-ccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeE
Confidence            3457888999999999999999974 78999999995 555555667788899999988775 99999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      |.||||+.|||+..+.+   ...+++.++..||..|+.||.|||   .++||+||||.+|||||.+|++||+|||+||..
T Consensus       445 ~fvmey~~Ggdm~~~~~---~~~F~e~rarfyaAev~l~L~fLH---~~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~  518 (694)
T KOG0694|consen  445 FFVMEYVAGGDLMHHIH---TDVFSEPRARFYAAEVVLGLQFLH---ENGIIYRDLKLDNLLLDTEGHVKIADFGLCKEG  518 (694)
T ss_pred             EEEEEecCCCcEEEEEe---cccccHHHHHHHHHHHHHHHHHHH---hcCceeeecchhheEEcccCcEEeccccccccc
Confidence            99999999999666655   356999999999999999999999   899999999999999999999999999999975


Q ss_pred             CCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296          711 DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                      .....  .++++||||.|||||++.+..|+.++|+|||||++|||+.|+.||.+.++.. .          .+.++..+ 
T Consensus       519 m~~g~--~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEee-~----------FdsI~~d~-  584 (694)
T KOG0694|consen  519 MGQGD--RTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEEE-V----------FDSIVNDE-  584 (694)
T ss_pred             CCCCC--ccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHHH-H----------HHHHhcCC-
Confidence            42222  4578999999999999999999999999999999999999999998654321 1          12222111 


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCCCH
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKM  822 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~  822 (833)
                         ...+...+.+.+.++.+++.++|++|..+
T Consensus       585 ---~~yP~~ls~ea~~il~~ll~k~p~kRLG~  613 (694)
T KOG0694|consen  585 ---VRYPRFLSKEAIAIMRRLLRKNPEKRLGS  613 (694)
T ss_pred             ---CCCCCcccHHHHHHHHHHhccCcccccCC
Confidence               11223456688899999999999999876

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=1.6e-42  Score=366.71  Aligned_cols=249  Identities=18%  Similarity=0.239  Sum_probs=199.8

Q ss_pred             ccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec----CCceEEEEe
Q 003296          560 LNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA----SDSAYLFYE  635 (833)
Q Consensus       560 ~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~----~~~~~lv~e  635 (833)
                      ...||+|++|.||+|.. +|+.||||+++.... ......+.|.+|+++|++++|||||+++|++.+    ....++|||
T Consensus        25 ~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~E  102 (283)
T PHA02988         25 SVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHK-GHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILE  102 (283)
T ss_pred             CeEEeeCCceEEEEEEE-CCEEEEEEecccccc-ccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEE
Confidence            46899999999999998 789999999953211 111124678899999999999999999999977    346899999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      |+++|+|.++++.  ...++|..+..++.|++.|++|||.  ..+++||||||+||++++++.+|++|||+++...... 
T Consensus       103 y~~~g~L~~~l~~--~~~~~~~~~~~i~~~i~~~l~~lH~--~~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~~-  177 (283)
T PHA02988        103 YCTRGYLREVLDK--EKDLSFKTKLDMAIDCCKGLYNLYK--YTNKPYKNLTSVSFLVTENYKLKIICHGLEKILSSPP-  177 (283)
T ss_pred             eCCCCcHHHHHhh--CCCCChhHHHHHHHHHHHHHHHHHh--cCCCCCCcCChhhEEECCCCcEEEcccchHhhhcccc-
Confidence            9999999999986  3468999999999999999999994  2478899999999999999999999999998654321 


Q ss_pred             CCccccccccccccccccccC--CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          716 TGSLSTVAGSVGYIPPEYAYT--MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                          ....||+.|+|||++.+  ..++.++|||||||++|||++|+.||.+... .+............      ..+  
T Consensus       178 ----~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~-~~~~~~i~~~~~~~------~~~--  244 (283)
T PHA02988        178 ----FKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTT-KEIYDLIINKNNSL------KLP--  244 (283)
T ss_pred             ----ccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCCH-HHHHHHHHhcCCCC------CCC--
Confidence                23568999999999875  6799999999999999999999999975432 22222111111110      011  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                          ...+.++.+++.+||+.||++|||++|+++.|++.
T Consensus       245 ----~~~~~~l~~li~~cl~~dp~~Rps~~ell~~l~~~  279 (283)
T PHA02988        245 ----LDCPLEIKCIVEACTSHDSIKRPNIKEILYNLSLY  279 (283)
T ss_pred             ----CcCcHHHHHHHHHHhcCCcccCcCHHHHHHHHHHH
Confidence                12345688999999999999999999999999864

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=8.9e-43  Score=342.46  Aligned_cols=264  Identities=19%  Similarity=0.186  Sum_probs=211.8

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC--CceE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS--DSAY  631 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~--~~~~  631 (833)
                      +.|+..+.|++|+||.||+|++ +++..||.|+++...  ...+-.-.-.|||.+|.+++|||||.+..+....  +.+|
T Consensus        76 ~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmek--ek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy  153 (419)
T KOG0663|consen   76 EEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEK--EKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIY  153 (419)
T ss_pred             HHHHHHhhcccCcceeEEEeccCCcceeEEeeeccccc--ccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceee
Confidence            3566788999999999999998 489999999995332  2233334568999999999999999999998864  5799


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      +|||||+. ||..+++... .++...+.+.++.|+++|++|||   ...|+|||+||+|+|+...|.+||+|||+|+.+.
T Consensus       154 ~VMe~~Eh-DLksl~d~m~-q~F~~~evK~L~~QlL~glk~lH---~~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~yg  228 (419)
T KOG0663|consen  154 IVMEYVEH-DLKSLMETMK-QPFLPGEVKTLMLQLLRGLKHLH---DNWILHRDLKTSNLLLSHKGILKIADFGLAREYG  228 (419)
T ss_pred             eeHHHHHh-hHHHHHHhcc-CCCchHHHHHHHHHHHHHHHHHh---hceeEecccchhheeeccCCcEEecccchhhhhc
Confidence            99999988 9999998753 56888999999999999999999   7889999999999999999999999999999876


Q ss_pred             CCCCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                      ...  ..++..+-|.+|.|||.+.+. .|+++.|+||+|||+.||+++++-|.+..++.+.-.....-+ ...+.+.+.+
T Consensus       229 sp~--k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQl~~If~llG-tPte~iwpg~  305 (419)
T KOG0663|consen  229 SPL--KPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQLDKIFKLLG-TPSEAIWPGY  305 (419)
T ss_pred             CCc--ccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhC-CCccccCCCc
Confidence            443  244667789999999998875 499999999999999999999999998888776544433322 2222222222


Q ss_pred             cCCc-----------h-----hHHH--HHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          791 SRTS-----------L-----AVRS--QMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       791 ~~~~-----------~-----~~~~--~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ...+           .     .+..  ......+++...+..||++|.|+.|.++|
T Consensus       306 ~~lp~~k~~~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~tA~~~L~h  361 (419)
T KOG0663|consen  306 SELPAVKKMTFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRITAEDGLKH  361 (419)
T ss_pred             cccchhhccccCCCCchhhhhhccccccchhHHHHHHHHhccCccccccHHHhhcc
Confidence            1110           0     0011  23677899999999999999999999875

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=2.4e-42  Score=366.44  Aligned_cols=252  Identities=19%  Similarity=0.207  Sum_probs=203.2

Q ss_pred             cCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      |+..+.||+|+||.||+|.. .+|+.||||++... ..........+.+|++++++++|||||+++++|.+++..++|||
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~-~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKK-RIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHh-hhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEE
Confidence            66778999999999999997 58999999998422 22222334568899999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      ||++|+|.+++.......+++.++..++.|++.||+|||   +.+|+||||||+|||+++++.+|++|||+++...... 
T Consensus        81 ~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~-  156 (285)
T cd05631          81 IMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQ---RERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGE-  156 (285)
T ss_pred             ecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCC-
Confidence            999999998887544456899999999999999999999   7899999999999999999999999999998754322 


Q ss_pred             CCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHH--HHHhhcccccccccccccccCC
Q 003296          716 TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKW--VLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                        ......||+.|||||++.+..++.++|||||||++|||++|+.||.........  +......         ....  
T Consensus       157 --~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~---------~~~~--  223 (285)
T cd05631         157 --TVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDRRVKE---------DQEE--  223 (285)
T ss_pred             --eecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcchhHHHHHHHhhc---------cccc--
Confidence              123467999999999999989999999999999999999999999854332111  1110000         0000  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCC-----HHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPK-----MKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps-----~~evl~~  828 (833)
                        .....+.++.+++.+||+.||++||+     ++|+++|
T Consensus       224 --~~~~~s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~h  261 (285)
T cd05631         224 --YSEKFSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQH  261 (285)
T ss_pred             --CCccCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHhcC
Confidence              01123456789999999999999997     8888875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=3e-44  Score=337.59  Aligned_cols=256  Identities=20%  Similarity=0.254  Sum_probs=208.5

Q ss_pred             HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      ..++.|+..++||+|+|+.||++.. ++|+.+|+|.++.+ + ....+.++..+|++|-+.++|||||++.+.+.+....
T Consensus         8 ~f~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~-k-~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~   85 (355)
T KOG0033|consen    8 KFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTK-K-LSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFH   85 (355)
T ss_pred             ccchhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhh-h-hccccHHHHHHHHHHHHhcCCCcEeehhhhhccccee
Confidence            3456677788999999999999986 68999999999532 2 2233678899999999999999999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC---CCceeccceee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL---KEPQIGDIELC  707 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~---~~~ki~dfgl~  707 (833)
                      |+|+|+|.||+|..-+-.  ....++..+-.++.||++||.|+|   .++|||||+||+|+++.+.   --+|++|||+|
T Consensus        86 ylvFe~m~G~dl~~eIV~--R~~ySEa~aSH~~rQiLeal~yCH---~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvA  160 (355)
T KOG0033|consen   86 YLVFDLVTGGELFEDIVA--REFYSEADASHCIQQILEALAYCH---SNGIVHRDLKPENLLLASKAKGAAVKLADFGLA  160 (355)
T ss_pred             EEEEecccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH---hcCceeccCChhheeeeeccCCCceeecccceE
Confidence            999999999999876543  245778888889999999999999   8999999999999999633   35799999999


Q ss_pred             eeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc
Q 003296          708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (833)
                      ..+..+.   ...+.+|||+|||||++...+|+..+|||+-|||||-++.|.+||.+...-. .....          ..
T Consensus       161 i~l~~g~---~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~~r-lye~I----------~~  226 (355)
T KOG0033|consen  161 IEVNDGE---AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHR-LYEQI----------KA  226 (355)
T ss_pred             EEeCCcc---ccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccHHH-HHHHH----------hc
Confidence            9887332   3467899999999999999999999999999999999999999998643211 11111          11


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ....-..+.+....+++.+++.+||..||++|.|+.|.++|
T Consensus       227 g~yd~~~~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL~H  267 (355)
T KOG0033|consen  227 GAYDYPSPEWDTVTPEAKSLIRRMLTVNPKKRITADEALKH  267 (355)
T ss_pred             cccCCCCcccCcCCHHHHHHHHHHhccChhhhccHHHHhCC
Confidence            11111222334556788899999999999999999999875

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.3e-43  Score=335.40  Aligned_cols=258  Identities=19%  Similarity=0.290  Sum_probs=214.1

Q ss_pred             HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhh----ccChhHHHHHHHHHhcCC-CCCcccceEEEe
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQ----LGSHHKFDKELEVLGKLS-NSNVMTPLAYVL  625 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~----~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~  625 (833)
                      ..-+.|+..+++|.|..++|-++.. ++|+++|||++........    ....++-.+|+.||+++. ||+|+++.++|+
T Consensus        14 ~fy~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~ye   93 (411)
T KOG0599|consen   14 GFYAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYE   93 (411)
T ss_pred             hHHhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeecc
Confidence            4456788899999999999999986 5899999999953322111    112355678999999985 999999999999


Q ss_pred             cCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccce
Q 003296          626 ASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIE  705 (833)
Q Consensus       626 ~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfg  705 (833)
                      .+..+++|+|.|+.|.|+|+|..  ...+++.+..+|+.|+.+|+.|||   ...|||||+||+|||+|+++.+||+|||
T Consensus        94 s~sF~FlVFdl~prGELFDyLts--~VtlSEK~tR~iMrqlfegVeylH---a~~IVHRDLKpENILlddn~~i~isDFG  168 (411)
T KOG0599|consen   94 SDAFVFLVFDLMPRGELFDYLTS--KVTLSEKETRRIMRQLFEGVEYLH---ARNIVHRDLKPENILLDDNMNIKISDFG  168 (411)
T ss_pred             CcchhhhhhhhcccchHHHHhhh--heeecHHHHHHHHHHHHHHHHHHH---HhhhhhcccChhheeeccccceEEeccc
Confidence            99999999999999999999986  567999999999999999999999   8899999999999999999999999999


Q ss_pred             eeeeeCCCCCCCccccccccccccccccccC------CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccc
Q 003296          706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT------MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQ  779 (833)
Q Consensus       706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~  779 (833)
                      +|..+.+++   .....||||+|.|||.+.+      ..|+..+|+||.||++|.++.|.+||.....+.  +       
T Consensus       169 Fa~~l~~Ge---kLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQml--M-------  236 (411)
T KOG0599|consen  169 FACQLEPGE---KLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQML--M-------  236 (411)
T ss_pred             eeeccCCch---hHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHHHHHH--H-------
Confidence            999887665   3467899999999998763      348899999999999999999999996322211  1       


Q ss_pred             ccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          780 DKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        ++-++........+.+.+.+..+.+++.+|++.||.+|.|++|+++|
T Consensus       237 --LR~ImeGkyqF~speWadis~~~KdLIsrlLqVdp~~Ritake~LaH  283 (411)
T KOG0599|consen  237 --LRMIMEGKYQFRSPEWADISATVKDLISRLLQVDPTKRITAKEALAH  283 (411)
T ss_pred             --HHHHHhcccccCCcchhhccccHHHHHHHHHeeCchhcccHHHHhcC
Confidence              11122223333445566778889999999999999999999999876

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-42  Score=355.26  Aligned_cols=259  Identities=21%  Similarity=0.221  Sum_probs=203.7

Q ss_pred             HHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhh----------ccChhHHHHHHHHHhcCCCCCcccce
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQ----------LGSHHKFDKELEVLGKLSNSNVMTPL  621 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~----------~~~~~~~~~E~~~l~~l~H~niv~~~  621 (833)
                      .-+.|+....||+|.||.|-+|.. .+++.||||++.+......          ....+...+||.||++++|||||+++
T Consensus        95 ~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~Li  174 (576)
T KOG0585|consen   95 QLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKLI  174 (576)
T ss_pred             ehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEEE
Confidence            346788889999999999999997 4899999999964322211          11235789999999999999999999


Q ss_pred             EEEecC--CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCc
Q 003296          622 AYVLAS--DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEP  699 (833)
Q Consensus       622 ~~~~~~--~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~  699 (833)
                      ++..++  +.+|||+|||..|.+...=..  ...++..++++|+.++..||+|||   ..+||||||||+|+|++++|++
T Consensus       175 EvLDDP~s~~~YlVley~s~G~v~w~p~d--~~els~~~Ar~ylrDvv~GLEYLH---~QgiiHRDIKPsNLLl~~~g~V  249 (576)
T KOG0585|consen  175 EVLDDPESDKLYLVLEYCSKGEVKWCPPD--KPELSEQQARKYLRDVVLGLEYLH---YQGIIHRDIKPSNLLLSSDGTV  249 (576)
T ss_pred             EeecCcccCceEEEEEeccCCccccCCCC--cccccHHHHHHHHHHHHHHHHHHH---hcCeeccccchhheEEcCCCcE
Confidence            998875  579999999999987654322  223899999999999999999999   7899999999999999999999


Q ss_pred             eeccceeeeeeCCCCCC---CccccccccccccccccccCCc---c-cccCcchhhHHHHHHHHhCCCcccCCccHHHHH
Q 003296          700 QIGDIELCKVIDPSKST---GSLSTVAGSVGYIPPEYAYTMR---V-TMAGNVYSFGVILLELLTGKTAVNQGNELAKWV  772 (833)
Q Consensus       700 ki~dfgl~~~~~~~~~~---~~~~~~~gt~~y~aPE~~~~~~---~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~  772 (833)
                      ||+|||.+.....+...   ......+|||.|||||.+.++.   + +.+.||||+||+||.|+.|+.||.+...+.-  
T Consensus       250 KIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~~~~l--  327 (576)
T KOG0585|consen  250 KISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDFELEL--  327 (576)
T ss_pred             EeeccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccchHHHH--
Confidence            99999999876333211   1234578999999999987633   3 5889999999999999999999976544322  


Q ss_pred             HHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Q 003296          773 LRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML  829 (833)
Q Consensus       773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L  829 (833)
                               .++++...+..+.  ..+...++.+++.++|++||++|.+..||..|.
T Consensus       328 ---------~~KIvn~pL~fP~--~pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hp  373 (576)
T KOG0585|consen  328 ---------FDKIVNDPLEFPE--NPEINEDLKDLIKRLLEKDPEQRITLPDIKLHP  373 (576)
T ss_pred             ---------HHHHhcCcccCCC--cccccHHHHHHHHHHhhcChhheeehhhheecc
Confidence                     2223332222211  123456788999999999999999999997763

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=3.2e-43  Score=352.18  Aligned_cols=250  Identities=20%  Similarity=0.246  Sum_probs=212.5

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      ...|++.+.+|+|.||.|-+|.. ..|+.||||.+ +++++.+.++...+.+||+||+.++||||+++|.+|+..+...|
T Consensus        52 kHRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsI-rKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvi  130 (668)
T KOG0611|consen   52 KHRYEITETLGKGTYGKVKLAYEHKSGREVAIKSI-RKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVI  130 (668)
T ss_pred             hhHHHHHHHhcCCcccceeehhhccCCcEeehhhh-hhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEE
Confidence            34566778999999999999996 68999999999 56666666777889999999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||||..+|+|+|++.+  .+.+++.+...+++||..|+.|+|   .++++|||+|.+|||+|.++.+||+|||++..+..
T Consensus       131 vMEYaS~GeLYDYiSe--r~~LsErEaRhfFRQIvSAVhYCH---knrVvHRDLKLENILLD~N~NiKIADFGLSNly~~  205 (668)
T KOG0611|consen  131 VMEYASGGELYDYISE--RGSLSEREARHFFRQIVSAVHYCH---KNRVVHRDLKLENILLDQNNNIKIADFGLSNLYAD  205 (668)
T ss_pred             EEEecCCccHHHHHHH--hccccHHHHHHHHHHHHHHHHHHh---hccceecccchhheeecCCCCeeeeccchhhhhcc
Confidence            9999999999999987  456999999999999999999999   89999999999999999999999999999987754


Q ss_pred             CCCCCccccccccccccccccccCCccc-ccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMRVT-MAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      ..   -..++||+|-|.+||++.+.+|. +.+|-||+||+||.++.|..||++.+.. ..+.+.. .         ..+.
T Consensus       206 ~k---fLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~Dhk-~lvrQIs-~---------GaYr  271 (668)
T KOG0611|consen  206 KK---FLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRDHK-RLVRQIS-R---------GAYR  271 (668)
T ss_pred             cc---HHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCchHH-HHHHHhh-c---------cccc
Confidence            43   45789999999999999999985 8899999999999999999999865432 1221111 1         0111


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .+     ..+..+.-+|..||..+|++|.|+.+|..|
T Consensus       272 EP-----~~PSdA~gLIRwmLmVNP~RRATieDiAsH  303 (668)
T KOG0611|consen  272 EP-----ETPSDASGLIRWMLMVNPERRATIEDIASH  303 (668)
T ss_pred             CC-----CCCchHHHHHHHHHhcCcccchhHHHHhhh
Confidence            11     122345678999999999999999999876

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=9.1e-42  Score=368.48  Aligned_cols=245  Identities=19%  Similarity=0.223  Sum_probs=198.8

Q ss_pred             cccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCCC
Q 003296          561 NVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPK  639 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~  639 (833)
                      ++||+|+||.||+|+. .+|+.||||+++. ...........+.+|++++++++||||+++++++..++..|+||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~-~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~   79 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKK-EVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANG   79 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEH-HHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCC
Confidence            4699999999999997 4789999999942 2222223345788999999999999999999999999999999999999


Q ss_pred             CChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCcc
Q 003296          640 GTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL  719 (833)
Q Consensus       640 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~  719 (833)
                      |+|.+++..  ...+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++.......  ..
T Consensus        80 ~~L~~~l~~--~~~~~~~~~~~~~~qi~~~L~~lH---~~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~--~~  152 (323)
T cd05571          80 GELFFHLSR--ERVFSEDRARFYGAEIVSALGYLH---SCDVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGA--TM  152 (323)
T ss_pred             CcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---hCCeEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCC--cc
Confidence            999999976  456899999999999999999999   78999999999999999999999999999875422211  22


Q ss_pred             ccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHH
Q 003296          720 STVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRS  799 (833)
Q Consensus       720 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  799 (833)
                      ...+||+.|||||++.+..++.++||||+||++|||++|+.||....... .........        ..++      ..
T Consensus       153 ~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~-~~~~~~~~~--------~~~p------~~  217 (323)
T cd05571         153 KTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK-LFELILMEE--------IRFP------RT  217 (323)
T ss_pred             cceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCCCHHH-HHHHHHcCC--------CCCC------CC
Confidence            45689999999999998899999999999999999999999997543221 111111110        0111      12


Q ss_pred             HHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296          800 QMLTVLKVAVACVSVSPEARP-----KMKSVLRM  828 (833)
Q Consensus       800 ~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~  828 (833)
                      ...++.+++.+||+.||++||     ++.|+++|
T Consensus       218 ~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~h  251 (323)
T cd05571         218 LSPEAKSLLAGLLKKDPKQRLGGGPEDAKEIMEH  251 (323)
T ss_pred             CCHHHHHHHHHHccCCHHHcCCCCCCCHHHHHcC
Confidence            345678999999999999999     79998864

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=9.2e-42  Score=375.35  Aligned_cols=260  Identities=22%  Similarity=0.285  Sum_probs=204.4

Q ss_pred             HHhcCCccccccCcccEEEEEEc------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEec
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLA  626 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~  626 (833)
                      .++|+..+.||+|+||.||+|+.      .++..||||+++...   .....+.+.+|+++++.+ +|||||+++++|..
T Consensus        34 ~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~---~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~  110 (375)
T cd05104          34 RNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSA---HLTEREALMSELKVLSYLGNHINIVNLLGACTV  110 (375)
T ss_pred             hHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCc---CcHHHHHHHHHHHHHHHhcCCcceeeeeeeecc
Confidence            34678889999999999999973      356789999995221   122346789999999999 89999999999999


Q ss_pred             CCceEEEEeeCCCCChhhhhhcCC--------------------------------------------------------
Q 003296          627 SDSAYLFYEYAPKGTLFDVLHGCL--------------------------------------------------------  650 (833)
Q Consensus       627 ~~~~~lv~ey~~~g~L~~~l~~~~--------------------------------------------------------  650 (833)
                      .+..++|||||++|+|.++++...                                                        
T Consensus       111 ~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  190 (375)
T cd05104         111 GGPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVR  190 (375)
T ss_pred             CCcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccc
Confidence            999999999999999999986421                                                        


Q ss_pred             -----------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          651 -----------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       651 -----------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                                       ...++|..+..++.|+++||+|||   +.+|+||||||+||+++.++.+|++|||+++.....
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~  267 (375)
T cd05104         191 SGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDIRND  267 (375)
T ss_pred             cceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCchhhEEEECCCcEEEecCccceeccCc
Confidence                             124789999999999999999999   789999999999999999999999999999876433


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      ..........++..|||||++.+..++.++|||||||++|||++ |..||............. ......      ..+ 
T Consensus       268 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~~~~~~~~-~~~~~~------~~~-  339 (375)
T cd05104         268 SNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVDSKFYKMI-KEGYRM------LSP-  339 (375)
T ss_pred             ccccccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHH-HhCccC------CCC-
Confidence            22111123345678999999998899999999999999999998 888987543222221111 110000      000 


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                           ...+.++.+++.+||+.||++||||.||+++|++.
T Consensus       340 -----~~~~~~l~~li~~cl~~dP~~RPs~~eil~~l~~~  374 (375)
T cd05104         340 -----ECAPSEMYDIMKSCWDADPLKRPTFKQIVQLIEQQ  374 (375)
T ss_pred             -----CCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHhh
Confidence                 01234678999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.2e-42  Score=348.66  Aligned_cols=258  Identities=20%  Similarity=0.245  Sum_probs=201.2

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC-----c
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD-----S  629 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~-----~  629 (833)
                      .|...+++|.|+||.||+|+. .+++.||||++ +.++.       -=.+|+++|++++|||||++.-+|....     .
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv-~~d~r-------~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~   96 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKV-LQDKR-------YKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVY   96 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEcCCCceeEEEEe-cCCCC-------cCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhH
Confidence            355678999999999999997 46899999999 44432       2247999999999999999998887532     3


Q ss_pred             eEEEEeeCCCCChhhhhhcC--CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC-CCceecccee
Q 003296          630 AYLFYEYAPKGTLFDVLHGC--LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL-KEPQIGDIEL  706 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~-~~~ki~dfgl  706 (833)
                      ..+||||||. +|.++++.-  ....++...++-++.|+.+||+|||   ..+|+||||||+|+|+|.+ |.+||||||.
T Consensus        97 lnlVleymP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh---~~~IcHRDIKPqNlLvD~~tg~LKicDFGS  172 (364)
T KOG0658|consen   97 LNLVLEYMPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLH---SHGICHRDIKPQNLLVDPDTGVLKICDFGS  172 (364)
T ss_pred             HHHHHHhchH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHH---hcCcccCCCChheEEEcCCCCeEEeccCCc
Confidence            5689999998 999999842  1345777778889999999999999   7899999999999999966 8999999999


Q ss_pred             eeeeCCCCCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccc--
Q 003296          707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLD--  783 (833)
Q Consensus       707 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~--  783 (833)
                      |+.+..++..   .+..-|..|.|||.+.+. .|+.+.||||.|||+.||+-|++-|.+.....+.+.....-+..-+  
T Consensus       173 AK~L~~~epn---iSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik~lG~Pt~e~  249 (364)
T KOG0658|consen  173 AKVLVKGEPN---ISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIKVLGTPTRED  249 (364)
T ss_pred             ceeeccCCCc---eeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHHHhCCCCHHH
Confidence            9998766643   456679999999988764 5999999999999999999999999987766655433222111111  


Q ss_pred             ---------ccccccccCCch---hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          784 ---------HILDFNVSRTSL---AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       784 ---------~~~~~~~~~~~~---~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                               +.-.+.+.....   .......+.++++.++++.+|.+|.++.|++.|
T Consensus       250 I~~mn~~y~~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~h  306 (364)
T KOG0658|consen  250 IKSMNPNYTEFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEALAH  306 (364)
T ss_pred             HhhcCcccccccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHHHHhcc
Confidence                     111111111110   122345688999999999999999999999875

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-43  Score=367.92  Aligned_cols=389  Identities=25%  Similarity=0.319  Sum_probs=263.1

Q ss_pred             CCEEECCCCCCCCcc--cccC--CCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296           10 LKLLNFSKNELVSLP--TFNG--FAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL   85 (833)
Q Consensus        10 L~~L~ls~N~l~~i~--~f~~--l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   85 (833)
                      -..|||+++.|..+.  .+.+  .+.-+.||+|+|+|+.+....|.++++|+.++|.+|.++ .+|...+...+|+.|+|
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L  132 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL  132 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence            457899999998872  2333  345677999999999999999999999999999999998 46766667777999999


Q ss_pred             cCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCcccccccccccc
Q 003296           86 SGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGS  165 (833)
Q Consensus        86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~  165 (833)
                      .+|.|+.+...++..++.|+.||||.|.|+.+...+|..=.++++|+|++|.|+..-...|.++.+|             
T Consensus       133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL-------------  199 (873)
T KOG4194|consen  133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSL-------------  199 (873)
T ss_pred             eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchh-------------
Confidence            9999998888899999999999999999998888889888999999999999998888888877664             


Q ss_pred             CChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCC--cCCcEEEcCCccccCCCCccccCCCC
Q 003296          166 VPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEIPSATFTSLE  243 (833)
Q Consensus       166 ~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~f~~l~  243 (833)
                               ..|.|+.|+++...+..|.++++|+.|||..|+|.-.--..|.  ++|+.|.+..|.+. .+..+.|-.+.
T Consensus       200 ---------~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~  269 (873)
T KOG4194|consen  200 ---------LTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLE  269 (873)
T ss_pred             ---------eeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeec
Confidence                     4555666666666666666777777777777776511001111  23333333333322 23444455555


Q ss_pred             CCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeecc
Q 003296          244 KLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNIS  323 (833)
Q Consensus       244 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  323 (833)
                      ++++|+|+.|++...-..++-++++|+.|+|++|.|..+-+..+...++|+.|+|++|+|+...+..|..+..|++|+|+
T Consensus       270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs  349 (873)
T KOG4194|consen  270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLS  349 (873)
T ss_pred             ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccc
Confidence            55555555555554444445555555555555555554444455555555555555555555555555555555555555


Q ss_pred             CCcCcccCccccccCCCCCEEEccCCccccccCc---cccCCCCCCEEEccCCcCCccCCCCcccccceeeccccccccc
Q 003296          324 WNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPN---SITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGP  400 (833)
Q Consensus       324 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~  400 (833)
                      +|+++......|.++++|+.|||++|.++..+.+   .|..+++|+.|+                      |.+|++..+
T Consensus       350 ~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~----------------------l~gNqlk~I  407 (873)
T KOG4194|consen  350 HNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR----------------------LTGNQLKSI  407 (873)
T ss_pred             ccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee----------------------ecCceeeec
Confidence            5555544444455555555555555555444332   244444444444                      445555545


Q ss_pred             hhhhhccCCCCCEEecccCcCccccchhccCCCCCCeeeCcCCcc
Q 003296          401 IPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQL  445 (833)
Q Consensus       401 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l  445 (833)
                      ...+|.++.+|+.|||.+|.|..+.|++|..+ .|+.|-+..-.+
T Consensus       408 ~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  408 PKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             chhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence            55789999999999999999999999999999 898887765444

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=1.1e-41  Score=368.58  Aligned_cols=248  Identities=17%  Similarity=0.217  Sum_probs=203.4

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||.||+|... +|+.||||++.. .........+.+.+|++++++++|||||++++++..++..|+|
T Consensus        18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~-~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   96 (329)
T PTZ00263         18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKK-REILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFL   96 (329)
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEH-HHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEE
Confidence            46778899999999999999974 789999999942 2222233456799999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||+++.....
T Consensus        97 ~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~  171 (329)
T PTZ00263         97 LEFVVGGELFTHLRK--AGRFPNDVAKFYHAELVLAFEYLH---SKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDR  171 (329)
T ss_pred             EcCCCCChHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHEEECCCCCEEEeeccCceEcCCC
Confidence            999999999999986  346888999999999999999999   789999999999999999999999999999876432


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      .     ...+||+.|+|||++.+..++.++|||||||++|||++|+.||.+......+ ......  ..      .++. 
T Consensus       172 ~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~-~~i~~~--~~------~~p~-  236 (329)
T PTZ00263        172 T-----FTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFRIY-EKILAG--RL------KFPN-  236 (329)
T ss_pred             c-----ceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCCHHHHH-HHHhcC--Cc------CCCC-
Confidence            2     3467999999999999888999999999999999999999999754432211 111111  00      0111 


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCC-----HHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPK-----MKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps-----~~evl~~  828 (833)
                           ....++.+++.+||+.||++||+     ++|++.|
T Consensus       237 -----~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~h  271 (329)
T PTZ00263        237 -----WFDGRARDLVKGLLQTDHTKRLGTLKGGVADVKNH  271 (329)
T ss_pred             -----CCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence                 12345779999999999999997     6888765

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=1.2e-41  Score=373.90  Aligned_cols=260  Identities=19%  Similarity=0.257  Sum_probs=203.3

Q ss_pred             HHhcCCccccccCcccEEEEEEc------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEec
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLA  626 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~  626 (833)
                      .++|+..+.||+|+||.||+|+.      .++..||||+++....   ....+.+.+|+++++++ +|||||+++++|..
T Consensus        37 ~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~  113 (374)
T cd05106          37 RDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAH---TDEREALMSELKILSHLGQHKNIVNLLGACTH  113 (374)
T ss_pred             HHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCC---HHHHHHHHHHHHHHHhhccCCceeeEeeEecC
Confidence            45788889999999999999984      2346899999952221   12245789999999999 89999999999999


Q ss_pred             CCceEEEEeeCCCCChhhhhhcCC--------------------------------------------------------
Q 003296          627 SDSAYLFYEYAPKGTLFDVLHGCL--------------------------------------------------------  650 (833)
Q Consensus       627 ~~~~~lv~ey~~~g~L~~~l~~~~--------------------------------------------------------  650 (833)
                      .+..++|||||++|+|.++++...                                                        
T Consensus       114 ~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (374)
T cd05106         114 GGPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQ  193 (374)
T ss_pred             CCCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCccccccc
Confidence            999999999999999999986421                                                        


Q ss_pred             ------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCc
Q 003296          651 ------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS  718 (833)
Q Consensus       651 ------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~  718 (833)
                                  ...++|.++.+++.|+++||+|||   +.+|+||||||+|||+++++.+||+|||+++..........
T Consensus       194 ~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH---~~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~  270 (374)
T cd05106         194 SSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLA---SKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVV  270 (374)
T ss_pred             cccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceee
Confidence                        124788999999999999999999   78999999999999999999999999999986543322111


Q ss_pred             cccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCCchhH
Q 003296          719 LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAV  797 (833)
Q Consensus       719 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  797 (833)
                      .....+++.|||||++.+..++.++|||||||++|||++ |+.||............ .....      ....+.     
T Consensus       271 ~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~~~~~~-~~~~~------~~~~~~-----  338 (374)
T cd05106         271 KGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNSKFYKM-VKRGY------QMSRPD-----  338 (374)
T ss_pred             ccCCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccccHHHHHH-HHccc------CccCCC-----
Confidence            122345678999999988889999999999999999997 99999753322111111 11100      000000     


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          798 RSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       798 ~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                       ..+.++.+++.+||+.||++|||+.||+++|+++
T Consensus       339 -~~~~~l~~li~~cl~~dp~~RPs~~~l~~~l~~~  372 (374)
T cd05106         339 -FAPPEIYSIMKMCWNLEPTERPTFSQISQLIQRQ  372 (374)
T ss_pred             -CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence             1235678999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9e-42  Score=363.09  Aligned_cols=247  Identities=19%  Similarity=0.243  Sum_probs=202.4

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|+..+.||+|+||.||+|... +|+.||||++... ........+.+.+|++++++++||||+++++++.+++..|+||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   80 (291)
T cd05612           2 DLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIP-EVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLM   80 (291)
T ss_pred             CceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHH-HHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEE
Confidence            5778899999999999999975 7899999998422 2122233567899999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+|++|||+++......
T Consensus        81 e~~~~~~L~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~~  155 (291)
T cd05612          81 EYVPGGELFSYLRN--SGRFSNSTGLFYASEIVCALEYLH---SKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRT  155 (291)
T ss_pred             eCCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHeEECCCCCEEEEecCcchhccCCc
Confidence            99999999999976  346899999999999999999999   7899999999999999999999999999998654221


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCc
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS  794 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (833)
                           ...+||+.|+|||++.+..++.++|||||||++|||++|+.||.+..... ..........        .+.   
T Consensus       156 -----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~~~-~~~~i~~~~~--------~~~---  218 (291)
T cd05612         156 -----WTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPFG-IYEKILAGKL--------EFP---  218 (291)
T ss_pred             -----ccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHhCCc--------CCC---
Confidence                 34579999999999998889999999999999999999999997544322 1111111100        011   


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCCCCC-----HHHHHHH
Q 003296          795 LAVRSQMLTVLKVAVACVSVSPEARPK-----MKSVLRM  828 (833)
Q Consensus       795 ~~~~~~~~~~~~l~~~cl~~dP~~Rps-----~~evl~~  828 (833)
                         ......+.+++.+||+.||.+||+     ++|+++|
T Consensus       219 ---~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h  254 (291)
T cd05612         219 ---RHLDLYAKDLIKKLLVVDRTRRLGNMKNGADDVKNH  254 (291)
T ss_pred             ---ccCCHHHHHHHHHHcCCCHHHccCCccCCHHHHhcC
Confidence               112346789999999999999995     8888765

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-41  Score=355.48  Aligned_cols=265  Identities=18%  Similarity=0.229  Sum_probs=211.3

Q ss_pred             HHHHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~  631 (833)
                      .......+.+.||+|.||.|..|....+..||||+++..+   ....+++|.+||++|.+++|||||+++|+|..++.++
T Consensus       535 fPRs~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a---~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePic  611 (807)
T KOG1094|consen  535 FPRSRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDA---TKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLC  611 (807)
T ss_pred             cchhheehhhhhcCcccceeEEEEecCceEEEEeecCccc---chhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchH
Confidence            3344455778999999999999999888999999995332   2234689999999999999999999999999999999


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      +|+|||++|||.+++.++....+.-....+|+.|||.|++||.   +.++||||+.+.|+|+|.++++||+|||+++.+.
T Consensus       612 mI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLe---s~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~ly  688 (807)
T KOG1094|consen  612 MITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLE---SLNFVHRDLATRNCLVDGEFTIKIADFGMSRNLY  688 (807)
T ss_pred             HHHHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHH---hhchhhccccccceeecCcccEEecCcccccccc
Confidence            9999999999999998754333455567789999999999999   7889999999999999999999999999999776


Q ss_pred             CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh--CCCcccCCcc--HHHHHHHhhccccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT--GKTAVNQGNE--LAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt--g~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~  787 (833)
                      .++........+-..+|||||.+.-+++++++|||+|||++||+++  ...||.+..+  ..+........+..  +.+ 
T Consensus       689 sg~yy~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~vven~~~~~~~~~~--~~~-  765 (807)
T KOG1094|consen  689 SGDYYRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVVENAGEFFRDQGR--QVV-  765 (807)
T ss_pred             cCCceeeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHHHHhhhhhcCCCCc--cee-
Confidence            6554433334555789999999999999999999999999999865  7889974322  11111111111111  110 


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                        +..    +.-++.++.+++.+||..|.++||+++++...|++
T Consensus       766 --l~~----P~~cp~~lyelml~Cw~~es~~RPsFe~lh~~lq~  803 (807)
T KOG1094|consen  766 --LSR----PPACPQGLYELMLRCWRRESEQRPSFEQLHLFLQE  803 (807)
T ss_pred             --ccC----CCcCcHHHHHHHHHHhchhhhcCCCHHHHHHHHHH
Confidence              011    12345577899999999999999999999999986

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=2.6e-41  Score=362.28  Aligned_cols=262  Identities=18%  Similarity=0.224  Sum_probs=201.1

Q ss_pred             HhcCCccccccCcccEEEEEEcC-----------------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCc
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-----------------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNV  617 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-----------------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~ni  617 (833)
                      ..|...+.||+|+||.||+|...                 ++..||||.+.....   ....++|.+|++++++++||||
T Consensus         5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~E~~~l~~l~h~ni   81 (304)
T cd05096           5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDAN---KNARNDFLKEVKILSRLKDPNI   81 (304)
T ss_pred             hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCC---HHHHHHHHHHHHHHhhcCCCCe
Confidence            46777889999999999999753                 234799999843211   1235679999999999999999


Q ss_pred             ccceEEEecCCceEEEEeeCCCCChhhhhhcCC-----------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCC
Q 003296          618 MTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCL-----------------ENALDWASRYSIAVGVAQGLAFLHGFTSNP  680 (833)
Q Consensus       618 v~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-----------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~  680 (833)
                      |++++++...+..++||||+++|+|.+++....                 ...++|.++..++.|++.||+|||   +.+
T Consensus        82 v~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~  158 (304)
T cd05096          82 IRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLS---SLN  158 (304)
T ss_pred             eEEEEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHH---HCC
Confidence            999999999999999999999999999986421                 124788999999999999999999   788


Q ss_pred             eeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh--C
Q 003296          681 ILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT--G  758 (833)
Q Consensus       681 iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt--g  758 (833)
                      |+||||||+|||+++++.+||+|||+++...............++..|||||++.+..++.++|||||||++|||++  +
T Consensus       159 ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~  238 (304)
T cd05096         159 FVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCK  238 (304)
T ss_pred             ccccCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccC
Confidence            99999999999999999999999999986643322112233456889999999988889999999999999999987  5


Q ss_pred             CCcccCCccHH--HHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          759 KTAVNQGNELA--KWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       759 ~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                      ..||.+.....  ..+.........  .. .  ....    ...+..+.+++.+||+.||++||||.||.+.|++
T Consensus       239 ~~p~~~~~~~~~~~~~~~~~~~~~~--~~-~--~~~~----~~~~~~~~~li~~cl~~~p~~RPs~~~i~~~l~~  304 (304)
T cd05096         239 EQPYGELTDEQVIENAGEFFRDQGR--QV-Y--LFRP----PPCPQGLYELMLQCWSRDCRERPSFSDIHAFLTE  304 (304)
T ss_pred             CCCCCcCCHHHHHHHHHHHhhhccc--cc-c--ccCC----CCCCHHHHHHHHHHccCCchhCcCHHHHHHHHhC
Confidence            56776432211  111111111000  00 0  0000    1223568899999999999999999999998864

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-42  Score=369.26  Aligned_cols=254  Identities=20%  Similarity=0.249  Sum_probs=200.7

Q ss_pred             CccccccCcccEEEEEEcC--CC---ceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          559 PLNVELKTRFSTYYKAVMP--SG---MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       559 ~~~~ig~g~~g~vy~~~~~--~~---~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ..+.||+|+||.||+|++.  ++   ..||||..+... .......++|.+|+++|++++|||||++||++..+..+|+|
T Consensus       161 l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~-~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~Pl~iv  239 (474)
T KOG0194|consen  161 LGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSS-ELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEPLMLV  239 (474)
T ss_pred             ccceeecccccEEEEEEEEecCCceeeeeEEEeecccc-cccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCccEEE
Confidence            3479999999999999974  23   238999984211 12233467999999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||+|+||+|.++|++... .++..++..++.++|+||+|||   +.++|||||-.+|+|++.++.+||+|||+++.....
T Consensus       240 mEl~~gGsL~~~L~k~~~-~v~~~ek~~~~~~AA~Gl~YLh---~k~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~~~  315 (474)
T KOG0194|consen  240 MELCNGGSLDDYLKKNKK-SLPTLEKLRFCYDAARGLEYLH---SKNCIHRDIAARNCLYSKKGVVKISDFGLSRAGSQY  315 (474)
T ss_pred             EEecCCCcHHHHHHhCCC-CCCHHHHHHHHHHHHhHHHHHH---HCCCcchhHhHHHheecCCCeEEeCccccccCCcce
Confidence            999999999999997432 6999999999999999999999   889999999999999999999999999998765311


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      . . ......-...|+|||.+....|++++|||||||++||+.+ |..||.+........ .........        ..
T Consensus       316 ~-~-~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~~v~~-kI~~~~~r~--------~~  384 (474)
T KOG0194|consen  316 V-M-KKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKNYEVKA-KIVKNGYRM--------PI  384 (474)
T ss_pred             e-e-ccccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCCHHHHHH-HHHhcCccC--------CC
Confidence            1 1 0001123568999999999999999999999999999999 889998655432111 110111100        00


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      +    ...+.++..++.+||+.||++||+|.+|.+.++.+
T Consensus       385 ~----~~~p~~~~~~~~~c~~~~p~~R~tm~~i~~~l~~~  420 (474)
T KOG0194|consen  385 P----SKTPKELAKVMKQCWKKDPEDRPTMSTIKKKLEAL  420 (474)
T ss_pred             C----CCCHHHHHHHHHHhccCChhhccCHHHHHHHHHHH
Confidence            0    12345677788899999999999999999998864

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=8.8e-42  Score=366.88  Aligned_cols=243  Identities=19%  Similarity=0.219  Sum_probs=196.7

Q ss_pred             cccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCCCCC
Q 003296          563 ELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGT  641 (833)
Q Consensus       563 ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~g~  641 (833)
                      ||+|+||.||+|... +++.||+|++.. ...........+.+|++++++++|||||+++++|..++..|+||||+++|+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~-~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~   79 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRK-AHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGE   79 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEH-HHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCc
Confidence            699999999999974 688999999942 222223345678899999999999999999999999999999999999999


Q ss_pred             hhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCcccc
Q 003296          642 LFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST  721 (833)
Q Consensus       642 L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~  721 (833)
                      |.+++..  ...+++..+..++.|+++||+|||   +.+|+||||||+||+++.++.+||+|||+++......  .....
T Consensus        80 L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~--~~~~~  152 (312)
T cd05585          80 LFHHLQR--EGRFDLSRARFYTAELLCALENLH---KFNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDD--DKTNT  152 (312)
T ss_pred             HHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCeEeCCCCHHHeEECCCCcEEEEECcccccCccCC--Ccccc
Confidence            9999976  346899999999999999999999   7899999999999999999999999999998643222  12245


Q ss_pred             ccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHH
Q 003296          722 VAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQM  801 (833)
Q Consensus       722 ~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  801 (833)
                      .+||+.|||||++.+..++.++|||||||++|||++|+.||.+... .+..........        .++      ....
T Consensus       153 ~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~-~~~~~~~~~~~~--------~~~------~~~~  217 (312)
T cd05585         153 FCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENV-NEMYRKILQEPL--------RFP------DGFD  217 (312)
T ss_pred             ccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCCH-HHHHHHHHcCCC--------CCC------CcCC
Confidence            6899999999999998999999999999999999999999975432 222222111100        000      1223


Q ss_pred             HHHHHHHHhccCCCCCCCCC---HHHHHHH
Q 003296          802 LTVLKVAVACVSVSPEARPK---MKSVLRM  828 (833)
Q Consensus       802 ~~~~~l~~~cl~~dP~~Rps---~~evl~~  828 (833)
                      .++.+++.+||+.||++||+   +.|++.|
T Consensus       218 ~~~~~li~~~L~~dp~~R~~~~~~~e~l~h  247 (312)
T cd05585         218 RDAKDLLIGLLSRDPTRRLGYNGAQEIKNH  247 (312)
T ss_pred             HHHHHHHHHHcCCCHHHcCCCCCHHHHHcC
Confidence            46789999999999999975   6777654

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=5.7e-42  Score=360.55  Aligned_cols=253  Identities=22%  Similarity=0.287  Sum_probs=213.2

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc-eEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS-AYL  632 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~-~~l  632 (833)
                      +.|...+++|+|+||.++.++.+ +++.||+|++.-..  .....++...+|+.++++++|||||.+.+.|+.++. .+|
T Consensus         4 ~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~--~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~I   81 (426)
T KOG0589|consen    4 DNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEK--LTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCI   81 (426)
T ss_pred             chhhhhhhcCccccchhhhhhhccCCceEEEEEEeccc--cCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEE
Confidence            45777899999999999999874 78899999995222  122334578899999999999999999999999988 999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||+||+||++.+.+.+.++..+++.+...|+.|++.|+.|||   +..|+|||||++||+++++..+|++|||+|+.+.+
T Consensus        82 vm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH---~~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~  158 (426)
T KOG0589|consen   82 VMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLH---ENRVLHRDLKCANIFLTKDKKVKLGDFGLAKILNP  158 (426)
T ss_pred             EEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH---hhhhhcccchhhhhhccccCceeecchhhhhhcCC
Confidence            999999999999999876667899999999999999999999   88999999999999999999999999999999876


Q ss_pred             CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      ...  ...+++||+.||.||.+.+.+|..|+||||+||++|||++-+++|.+.+ +...+......      .+++    
T Consensus       159 ~~~--~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~-m~~Li~ki~~~------~~~P----  225 (426)
T KOG0589|consen  159 EDS--LASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASN-MSELILKINRG------LYSP----  225 (426)
T ss_pred             chh--hhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccc-hHHHHHHHhhc------cCCC----
Confidence            542  3367899999999999999999999999999999999999999997543 33333222211      1111    


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                         .+...+.++..++..|++.+|..||++.|++.+
T Consensus       226 ---lp~~ys~el~~lv~~~l~~~P~~RPsa~~LL~~  258 (426)
T KOG0589|consen  226 ---LPSMYSSELRSLVKSMLRKNPEHRPSALELLRR  258 (426)
T ss_pred             ---CCccccHHHHHHHHHHhhcCCccCCCHHHHhhC
Confidence               112345678889999999999999999999876

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=2.7e-41  Score=366.26  Aligned_cols=248  Identities=17%  Similarity=0.167  Sum_probs=202.4

Q ss_pred             HhcCCccccccCcccEEEEEEcC--CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP--SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      ++|+..+.||+|+||.||+|...  ++..||||++. ..........+.+.+|++++++++|||||++++++.+++..|+
T Consensus        30 ~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~-~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~l  108 (340)
T PTZ00426         30 EDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFE-KSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYL  108 (340)
T ss_pred             hhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEE-HHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEE
Confidence            46888899999999999999864  34689999984 2222223345678999999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||||+++|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+|||++.++.+|++|||+++....
T Consensus       109 v~Ey~~~g~L~~~i~~--~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~  183 (340)
T PTZ00426        109 VLEFVIGGEFFTFLRR--NKRFPNDVGCFYAAQIVLIFEYLQ---SLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDT  183 (340)
T ss_pred             EEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEccCCCHHHEEECCCCCEEEecCCCCeecCC
Confidence            9999999999999976  346899999999999999999999   78999999999999999999999999999987642


Q ss_pred             CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      .     ....+||+.|||||++.+..++.++|||||||++|||++|+.||.+......+.. ......        ..+.
T Consensus       184 ~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~-i~~~~~--------~~p~  249 (340)
T PTZ00426        184 R-----TYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEPLLIYQK-ILEGII--------YFPK  249 (340)
T ss_pred             C-----cceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCCHHHHHHH-HhcCCC--------CCCC
Confidence            2     1356899999999999888899999999999999999999999986543221111 111100        0010


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARP-----KMKSVLRM  828 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~  828 (833)
                            .....+.+++.+|++.||++|+     +++|+++|
T Consensus       250 ------~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~h  284 (340)
T PTZ00426        250 ------FLDNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEH  284 (340)
T ss_pred             ------CCCHHHHHHHHHHcccCHHHcCCCCCCCHHHHHcC
Confidence                  1234567899999999999995     89998875

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.4e-41  Score=367.16  Aligned_cols=255  Identities=16%  Similarity=0.176  Sum_probs=205.7

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|+..+.||+|+||.||+|+.. +|+.||||++.. .........+.+.+|++++++++|||||++++++...+..|+||
T Consensus         2 ~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~-~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~   80 (333)
T cd05600           2 DFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKK-SLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAM   80 (333)
T ss_pred             CcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEH-HHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEE
Confidence            4777899999999999999975 689999999942 22222234567899999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++....  
T Consensus        81 e~~~g~~L~~~l~~--~~~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~--  153 (333)
T cd05600          81 EYVPGGDFRTLLNN--LGVLSEDHARFYMAEMFEAVDALH---ELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVT--  153 (333)
T ss_pred             eCCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEECCCCCEEEEeCcCCccccc--
Confidence            99999999999975  346899999999999999999999   78999999999999999999999999999986543  


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCc
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS  794 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (833)
                         ......||+.|+|||++.+..++.++|||||||++|||++|+.||........+.... ........   +....  
T Consensus       154 ---~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~-~~~~~~~~---~~~~~--  224 (333)
T cd05600         154 ---YANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLK-YWKETLQR---PVYDD--  224 (333)
T ss_pred             ---ccCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCHHHHHHHHH-hccccccC---CCCCc--
Confidence               1235679999999999998899999999999999999999999997544322221111 00000000   00000  


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          795 LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       795 ~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                       .....+.++.+++.+|+..+|++||+++|++++
T Consensus       225 -~~~~~s~~~~~li~~~l~~~~~rr~s~~~ll~h  257 (333)
T cd05600         225 -PRFNLSDEAWDLITKLINDPSRRFGSLEDIKNH  257 (333)
T ss_pred             -cccccCHHHHHHHHHHhhChhhhcCCHHHHHhC
Confidence             001234578899999999999999999999976

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=4.3e-41  Score=363.02  Aligned_cols=245  Identities=19%  Similarity=0.217  Sum_probs=198.1

Q ss_pred             cccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCCC
Q 003296          561 NVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPK  639 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~  639 (833)
                      +.||+|+||.||+|.. .+|..||+|++... ..........+.+|++++++++||||++++++|..++..|+||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~   79 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKE-VIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANG   79 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHH-HhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCC
Confidence            4689999999999996 47999999999422 212223346788999999999999999999999999999999999999


Q ss_pred             CChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCcc
Q 003296          640 GTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL  719 (833)
Q Consensus       640 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~  719 (833)
                      |+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||+++.......  ..
T Consensus        80 ~~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~--~~  152 (323)
T cd05595          80 GELFFHLSR--ERVFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA--TM  152 (323)
T ss_pred             CcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHEEEcCCCCEEecccHHhccccCCCC--cc
Confidence            999999875  346899999999999999999999   78999999999999999999999999999875422221  22


Q ss_pred             ccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHH
Q 003296          720 STVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRS  799 (833)
Q Consensus       720 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  799 (833)
                      ....||+.|||||++.+..++.++|||||||++|||++|+.||.......... .......        .++      ..
T Consensus       153 ~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~-~~~~~~~--------~~p------~~  217 (323)
T cd05595         153 KTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFE-LILMEEI--------RFP------RT  217 (323)
T ss_pred             ccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCHHHHHH-HHhcCCC--------CCC------CC
Confidence            34679999999999998899999999999999999999999997543322111 1111100        011      12


Q ss_pred             HHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296          800 QMLTVLKVAVACVSVSPEARP-----KMKSVLRM  828 (833)
Q Consensus       800 ~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~  828 (833)
                      ...++.+++.+||+.||++||     ++.|++++
T Consensus       218 ~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~h  251 (323)
T cd05595         218 LSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH  251 (323)
T ss_pred             CCHHHHHHHHHHccCCHHHhCCCCCCCHHHHHcC
Confidence            234678999999999999998     89888764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=5.5e-41  Score=362.82  Aligned_cols=245  Identities=20%  Similarity=0.233  Sum_probs=198.9

Q ss_pred             cccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCCC
Q 003296          561 NVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPK  639 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~  639 (833)
                      +.||+|+||.||+|.. .+|+.||||++.. ...........+.+|++++++++||||+++++++..++..|+||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~-~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~   79 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKK-EVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNG   79 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEH-HHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCC
Confidence            3689999999999996 4799999999942 2222223456789999999999999999999999999999999999999


Q ss_pred             CChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCcc
Q 003296          640 GTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL  719 (833)
Q Consensus       640 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~  719 (833)
                      |+|.+++..  ...+++.++..++.|++.||+|||   +.+|+||||||+|||++.++.+|++|||+++......  ...
T Consensus        80 g~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~--~~~  152 (328)
T cd05593          80 GELFFHLSR--ERVFSEDRTRFYGAEIVSALDYLH---SGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDA--ATM  152 (328)
T ss_pred             CCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCeEecccCHHHeEECCCCcEEEecCcCCccCCCcc--ccc
Confidence            999999875  346899999999999999999999   7899999999999999999999999999987543221  122


Q ss_pred             ccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHH
Q 003296          720 STVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRS  799 (833)
Q Consensus       720 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  799 (833)
                      ...+||+.|+|||++.+..++.++|||||||++|||++|+.||...... ..........        ..++      ..
T Consensus       153 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~~-~~~~~~~~~~--------~~~p------~~  217 (328)
T cd05593         153 KTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE-KLFELILMED--------IKFP------RT  217 (328)
T ss_pred             ccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCCHH-HHHHHhccCC--------ccCC------CC
Confidence            4568999999999999888999999999999999999999999754322 2211111110        0111      12


Q ss_pred             HHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296          800 QMLTVLKVAVACVSVSPEARP-----KMKSVLRM  828 (833)
Q Consensus       800 ~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~  828 (833)
                      ...++.+++.+||+.||++||     ++.|+++|
T Consensus       218 ~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h  251 (328)
T cd05593         218 LSADAKSLLSGLLIKDPNKRLGGGPDDAKEIMRH  251 (328)
T ss_pred             CCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHhcC
Confidence            234678899999999999997     89999875

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=5.1e-41  Score=338.21  Aligned_cols=266  Identities=18%  Similarity=0.235  Sum_probs=209.4

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCC-cccceEEEecCC----
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSN-VMTPLAYVLASD----  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~n-iv~~~~~~~~~~----  628 (833)
                      ..|+..+.+|+|+||+||+|+. .+|+.||+|++.-..+  .++......+|+.++++++|+| ||++++++...+    
T Consensus        11 ~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~--~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~   88 (323)
T KOG0594|consen   11 FDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFE--EEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRG   88 (323)
T ss_pred             HHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEecccc--ccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccc
Confidence            3455667899999999999996 5899999999952222  1345567799999999999999 999999999877    


Q ss_pred             --ceEEEEeeCCCCChhhhhhcCCC--CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccc
Q 003296          629 --SAYLFYEYAPKGTLFDVLHGCLE--NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDI  704 (833)
Q Consensus       629 --~~~lv~ey~~~g~L~~~l~~~~~--~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~df  704 (833)
                        ..++|+||++. ||.+++.....  ..++...++.++.|+++||+|||   +++|+||||||+|||++++|.+|++||
T Consensus        89 ~~~l~lvfe~~d~-DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H---~~~IlHRDLKPQNlLi~~~G~lKlaDF  164 (323)
T KOG0594|consen   89 IGKLYLVFEFLDR-DLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLH---SHGILHRDLKPQNLLISSSGVLKLADF  164 (323)
T ss_pred             cceEEEEEEeecc-cHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHH---hCCeecccCCcceEEECCCCcEeeecc
Confidence              78999999976 99999987543  35777889999999999999999   889999999999999999999999999


Q ss_pred             eeeeeeCCCCCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc---
Q 003296          705 ELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD---  780 (833)
Q Consensus       705 gl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~---  780 (833)
                      |+|+...-...  ..+..++|..|.|||++.+. .|+...||||+|||++||+++++-|.+..+..+.......-+.   
T Consensus       165 GlAra~~ip~~--~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~ql~~If~~lGtP~e  242 (323)
T KOG0594|consen  165 GLARAFSIPMR--TYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEIDQLFRIFRLLGTPNE  242 (323)
T ss_pred             chHHHhcCCcc--cccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHcCCCCc
Confidence            99996642222  24567899999999999876 6999999999999999999999999987776655433222111   


Q ss_pred             -c---ccccccccc--cCCc--hh----HHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          781 -K---LDHILDFNV--SRTS--LA----VRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       781 -~---~~~~~~~~~--~~~~--~~----~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                       .   .....+...  +...  ..    .........+++.+|++.+|++|.|++.++.|
T Consensus       243 ~~Wp~v~~~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h  302 (323)
T KOG0594|consen  243 KDWPGVSSLPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRISAKGALTH  302 (323)
T ss_pred             cCCCCccccccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcccCcCHHHHhcC
Confidence             1   111111111  1110  00    11112478899999999999999999999987

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=3.9e-41  Score=357.93  Aligned_cols=265  Identities=16%  Similarity=0.154  Sum_probs=203.6

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|+..+.||+|+||.||+|+.. +++.||||++....  ......+.+.+|++++++++|||||+++++|..++..|+||
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   79 (287)
T cd07848           2 KFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSE--ENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVF   79 (287)
T ss_pred             CceEEEEecccCCEEEEEEEECCCCcEEEEEEEeccc--ccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEE
Confidence            5778899999999999999985 78999999985321  12233567889999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||++++.+..+...  ...+++..+..++.|++.||+|||   ..+|+||||||+||+++.++.+||+|||+++......
T Consensus        80 e~~~~~~l~~~~~~--~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~  154 (287)
T cd07848          80 EYVEKNMLELLEEM--PNGVPPEKVRSYIYQLIKAIHWCH---KNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGS  154 (287)
T ss_pred             ecCCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCcEEEeeccCcccccccc
Confidence            99998777655432  346899999999999999999999   7899999999999999999999999999998764322


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc-------------c
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD-------------K  781 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~-------------~  781 (833)
                      .. ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+................             .
T Consensus       155 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (287)
T cd07848         155 NA-NYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMKLFYSNPR  233 (287)
T ss_pred             cc-cccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhCCCCHHHHHhhhccch
Confidence            11 223467999999999998888999999999999999999999999865433322111100000             0


Q ss_pred             ccccccccccCCc----hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          782 LDHILDFNVSRTS----LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       782 ~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ......+......    ......+.++.+++.+||+.||++|||++|+++|
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~h  284 (287)
T cd07848         234 FHGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLNH  284 (287)
T ss_pred             hcccccCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhcC
Confidence            0000000000000    0011234578999999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=8.9e-41  Score=362.06  Aligned_cols=263  Identities=17%  Similarity=0.214  Sum_probs=203.6

Q ss_pred             HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      .++|+..+.||+|+||.||+++.. +|..||+|.+....   .....+.|.+|++++++++|||||++++++..++..++
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l   80 (331)
T cd06649           4 DDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEI---KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISI   80 (331)
T ss_pred             cccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeeccc---CHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence            356888899999999999999975 78999999984221   11234679999999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||||+++|+|.+++..  ...+++..+..++.|++.||+|||+  ..+|+||||||+||+++.++.+||+|||+++....
T Consensus        81 v~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~i~~~l~~lH~--~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  156 (331)
T cd06649          81 CMEHMDGGSLDQVLKE--AKRIPEEILGKVSIAVLRGLAYLRE--KHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID  156 (331)
T ss_pred             EeecCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHhh--cCCEEcCCCChhhEEEcCCCcEEEccCcccccccc
Confidence            9999999999999976  3458999999999999999999994  24699999999999999999999999999876532


Q ss_pred             CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhc---cc-ccccccc--
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSA---QQ-DKLDHIL--  786 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~---~~-~~~~~~~--  786 (833)
                      ..    .....||+.|+|||++.+..++.++|||||||++|||+||+.||...... +.......   .. .......  
T Consensus       157 ~~----~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  231 (331)
T cd06649         157 SM----ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDAK-ELEAIFGRPVVDGEEGEPHSISP  231 (331)
T ss_pred             cc----cccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHhcccccccccCCccccCc
Confidence            21    23467999999999999888999999999999999999999999643321 11111000   00 0000000  


Q ss_pred             --------------------------ccccc--CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          787 --------------------------DFNVS--RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       787 --------------------------~~~~~--~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                                                +....  .+.........++.+++.+||+.||++|||++|+++|
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~~P~~Rpt~~ell~h  301 (331)
T cd06649         232 RPRPPGRPVSGHGMDSRPAMAIFELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERADLKMLMNH  301 (331)
T ss_pred             ccccccccccccccccccchhHHHHHHHHHhCCCcCCCCccccHHHHHHHHHHccCCcccCCCHHHHhcC
Confidence                                      00000  0000001234578899999999999999999999886

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=100.00  E-value=7.9e-43  Score=336.77  Aligned_cols=254  Identities=16%  Similarity=0.235  Sum_probs=213.2

Q ss_pred             HHHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296          551 KAMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS  629 (833)
Q Consensus       551 ~~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~  629 (833)
                      +.-++.|+....+|+|+||.||||.. .+|+.||||++...      .+.++..+|+.||++++.|+||++||.|.....
T Consensus        29 K~PEEVFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~------sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sD  102 (502)
T KOG0574|consen   29 KPPEEVFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVD------TDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSD  102 (502)
T ss_pred             CChHHHHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCcc------chHHHHHHHHHHHHHcCCchhhhhhhhhccCCc
Confidence            34455677778999999999999997 48999999999422      346889999999999999999999999999999


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                      +|+|||||-.|+..|.++.+ ...+.+.++..+....++||+|||   ...-||||||..|||++.+|.+|++|||+|..
T Consensus       103 LWIVMEYCGAGSiSDI~R~R-~K~L~E~EIs~iL~~TLKGL~YLH---~~~KIHRDIKAGNILLNT~G~AKLADFGVAGQ  178 (502)
T KOG0574|consen  103 LWIVMEYCGAGSISDIMRAR-RKPLSEQEISAVLRDTLKGLQYLH---DLKKIHRDIKAGNILLNTDGIAKLADFGVAGQ  178 (502)
T ss_pred             eEeehhhcCCCcHHHHHHHh-cCCccHHHHHHHHHHHHhHHHHHH---HHHHHHhhcccccEEEcccchhhhhhccccch
Confidence            99999999999999999864 457999999999999999999999   67789999999999999999999999999987


Q ss_pred             eCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      +...-.  ...++.|||.|||||++..-.|++++||||+|++..||..|++||.+-..+...+            ++...
T Consensus       179 LTDTMA--KRNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPMRAIF------------MIPT~  244 (502)
T KOG0574|consen  179 LTDTMA--KRNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPMRAIF------------MIPTK  244 (502)
T ss_pred             hhhhHH--hhCccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccccccceeE------------eccCC
Confidence            654322  2257899999999999998899999999999999999999999997543322111            11111


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .++....++..+.++-+++..|+.+.|++|-|+.++++|
T Consensus       245 PPPTF~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L~~H  283 (502)
T KOG0574|consen  245 PPPTFKKPEEWSSEFNDFIRSCLIKKPEERKTALRLCEH  283 (502)
T ss_pred             CCCCCCChHhhhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Confidence            222233345667789999999999999999999999886

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.7e-42  Score=357.39  Aligned_cols=250  Identities=22%  Similarity=0.281  Sum_probs=207.4

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      +.-|...+.||.|+||.||-|.+ .+...||||++....+... ...+++.+||+.|++++|||+|.+.|+|..+...||
T Consensus        25 Eklf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~-EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWL  103 (948)
T KOG0577|consen   25 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSN-EKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWL  103 (948)
T ss_pred             HHHHHHHHHhcCCccceeEEeeccCccceeeeeeccccccccH-HHHHHHHHHHHHHHhccCCCcccccceeeccchHHH
Confidence            34466678999999999999997 5789999999976554332 234679999999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      |||||-| +-.|++.-. +.++.+-++..|+.|++.||+|||   +.+.||||||..|||+++.|.+|++|||.|..+.+
T Consensus       104 VMEYClG-SAsDlleVh-kKplqEvEIAAi~~gaL~gLaYLH---S~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~P  178 (948)
T KOG0577|consen  104 VMEYCLG-SASDLLEVH-KKPLQEVEIAAITHGALQGLAYLH---SHNRIHRDIKAGNILLSEPGLVKLADFGSASIMAP  178 (948)
T ss_pred             HHHHHhc-cHHHHHHHH-hccchHHHHHHHHHHHHHHHHHHH---HhhHHhhhccccceEecCCCeeeeccccchhhcCc
Confidence            9999965 777776543 346888999999999999999999   77899999999999999999999999999987754


Q ss_pred             CCCCCcccccccccccccccccc---CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAY---TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      .      .+++|||+|||||++.   .+.|+-|+||||+||++.|+...++|....+.+....-....+...+.      
T Consensus       179 A------nsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMNAMSALYHIAQNesPtLq------  246 (948)
T KOG0577|consen  179 A------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPTLQ------  246 (948)
T ss_pred             h------hcccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCchHHHHHHHHHhcCCCCCC------
Confidence            3      4689999999999986   567999999999999999999999998766655444333322222111      


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                             ..+.+..+..++..||++-|.+|||.+++++|
T Consensus       247 -------s~eWS~~F~~Fvd~CLqKipqeRptse~ll~H  278 (948)
T KOG0577|consen  247 -------SNEWSDYFRNFVDSCLQKIPQERPTSEELLKH  278 (948)
T ss_pred             -------CchhHHHHHHHHHHHHhhCcccCCcHHHHhhc
Confidence                   12445678889999999999999999999886

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=1.3e-40  Score=359.57  Aligned_cols=246  Identities=18%  Similarity=0.231  Sum_probs=197.6

Q ss_pred             cccccCcccEEEEEEc----CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEee
Q 003296          561 NVELKTRFSTYYKAVM----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEY  636 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey  636 (833)
                      +.||+|+||.||+++.    .+|+.||||+++.............+.+|++++++++|||||+++++|..++..|+||||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~   81 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY   81 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence            5799999999999985    368899999995322222223446788999999999999999999999999999999999


Q ss_pred             CCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCC
Q 003296          637 APKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST  716 (833)
Q Consensus       637 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~  716 (833)
                      +++|+|.+++..  ...+.+..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++....... 
T Consensus        82 ~~~~~L~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-  155 (323)
T cd05584          82 LSGGELFMHLER--EGIFMEDTACFYLSEISLALEHLH---QQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGT-  155 (323)
T ss_pred             CCCchHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCCEEEeeCcCCeecccCCC-
Confidence            999999999976  345788888999999999999999   78999999999999999999999999999875432221 


Q ss_pred             CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchh
Q 003296          717 GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLA  796 (833)
Q Consensus       717 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  796 (833)
                       ......||+.|+|||++.+..++.++|||||||++|||++|+.||....... ..........        .++.    
T Consensus       156 -~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~~~-~~~~~~~~~~--------~~~~----  221 (323)
T cd05584         156 -VTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENRKK-TIDKILKGKL--------NLPP----  221 (323)
T ss_pred             -cccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCCHHH-HHHHHHcCCC--------CCCC----
Confidence             2234679999999999998889999999999999999999999997544322 1111111100        0110    


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296          797 VRSQMLTVLKVAVACVSVSPEARP-----KMKSVLRM  828 (833)
Q Consensus       797 ~~~~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~  828 (833)
                        ....++.+++.+||+.||++||     ++++++++
T Consensus       222 --~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~h  256 (323)
T cd05584         222 --YLTPEARDLLKKLLKRNPSSRLGAGPGDAAEVQSH  256 (323)
T ss_pred             --CCCHHHHHHHHHHcccCHhHcCCCCCCCHHHHhcC
Confidence              1234678999999999999999     78888764

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-41  Score=388.31  Aligned_cols=256  Identities=23%  Similarity=0.340  Sum_probs=205.3

Q ss_pred             cCCccccccCcccEEEEEEcC--CCc----eEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          557 ANPLNVELKTRFSTYYKAVMP--SGM----SYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~--~~~----~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      -+..+.||+|+||.||+|+..  +|.    .||||.+++.   .+.+...+|.+|..+|++++|||||+++|.|.+....
T Consensus       694 v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~---~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~  770 (1025)
T KOG1095|consen  694 VTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRL---SSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPP  770 (1025)
T ss_pred             eEeeeeeccccccceEEEEEecCCCCccceEEEEEecccc---CCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCc
Confidence            345689999999999999964  343    4999999533   2334568999999999999999999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCC-----CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccce
Q 003296          631 YLFYEYAPKGTLFDVLHGCL-----ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIE  705 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~-----~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfg  705 (833)
                      ++++|||++|||..+|++.+     ...+...+.+.++.|||+|+.||+   ++++|||||..+|+||++...+||+|||
T Consensus       771 ~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe---~~~fvHRDLAaRNCLL~~~r~VKIaDFG  847 (1025)
T KOG1095|consen  771 LILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLE---SKHFVHRDLAARNCLLDERRVVKIADFG  847 (1025)
T ss_pred             EEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHH---hCCCcCcchhhhheeecccCcEEEcccc
Confidence            99999999999999999753     235888999999999999999999   8899999999999999999999999999


Q ss_pred             eeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccc
Q 003296          706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDH  784 (833)
Q Consensus       706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~  784 (833)
                      +|+.+...+.........-...|||||.+..+.++.|+|||||||++||++| |..||.+.....  +......+.+++.
T Consensus       848 lArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~~--v~~~~~~ggRL~~  925 (1025)
T KOG1095|consen  848 LARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNFE--VLLDVLEGGRLDP  925 (1025)
T ss_pred             hhHhhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcchHH--HHHHHHhCCccCC
Confidence            9995543332211111122368999999999999999999999999999999 788987544322  1111122222211


Q ss_pred             cccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          785 ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       785 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                                  +..++..+.+++..||+.+|++||++..+++++..+
T Consensus       926 ------------P~~CP~~ly~lM~~CW~~~pe~RP~F~~i~~q~~~i  961 (1025)
T KOG1095|consen  926 ------------PSYCPEKLYQLMLQCWKHDPEDRPSFRTIVEQDPAI  961 (1025)
T ss_pred             ------------CCCCChHHHHHHHHHccCChhhCccHHHHHhhhhhh
Confidence                        123455777999999999999999999999988765

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=1.3e-40  Score=354.47  Aligned_cols=264  Identities=17%  Similarity=0.197  Sum_probs=199.2

Q ss_pred             hcCCccccccCcccEEEEEEc-C-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC---CCCCcccceEEEec----
Q 003296          556 VANPLNVELKTRFSTYYKAVM-P-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL---SNSNVMTPLAYVLA----  626 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l---~H~niv~~~~~~~~----  626 (833)
                      .|+..+.||+|+||.||+|+. . +|..||||+++....  .......+.+|+++++++   +|||||+++++|..    
T Consensus         2 ~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~   79 (290)
T cd07862           2 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTG--EEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD   79 (290)
T ss_pred             CcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccC--CCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCC
Confidence            477889999999999999986 3 578899999843211  122345677888887766   69999999999863    


Q ss_pred             -CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccce
Q 003296          627 -SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIE  705 (833)
Q Consensus       627 -~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfg  705 (833)
                       ....++||||++ |+|.+++.......+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.+|++|||
T Consensus        80 ~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~iiH~dlkp~Nil~~~~~~~kl~Dfg  155 (290)
T cd07862          80 RETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADFG  155 (290)
T ss_pred             CCCcEEEEEccCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEEcCCCCEEEcccc
Confidence             356899999996 69999997654556899999999999999999999   7899999999999999999999999999


Q ss_pred             eeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHh--hccc--cc
Q 003296          706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRN--SAQQ--DK  781 (833)
Q Consensus       706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~--~~~~--~~  781 (833)
                      +++......   ......||+.|+|||++.+..++.++|||||||++|||++|++||.+...........  ....  ..
T Consensus       156 ~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~i~~~~~~~~~~~  232 (290)
T cd07862         156 LARIYSFQM---ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEED  232 (290)
T ss_pred             ceEeccCCc---ccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhh
Confidence            998764332   2245679999999999988889999999999999999999999998655433221111  0000  00


Q ss_pred             c-------cccccccccCCch-hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          782 L-------DHILDFNVSRTSL-AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       782 ~-------~~~~~~~~~~~~~-~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .       ............. ........+.+++.+|++.||++|||+.|+++|
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~h  287 (290)
T cd07862         233 WPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSH  287 (290)
T ss_pred             chhhhcccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHHHhcC
Confidence            0       0000000000000 001234567799999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=2e-40  Score=351.68  Aligned_cols=258  Identities=22%  Similarity=0.310  Sum_probs=206.1

Q ss_pred             HhcCCccccccCcccEEEEEEcCC------CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPS------GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~------~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~  628 (833)
                      ++|+..+.||+|+||.||+|....      ...||+|.++...   .....++|.+|++++++++||||+++++++...+
T Consensus         5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~---~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~   81 (283)
T cd05048           5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENA---EPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQ   81 (283)
T ss_pred             HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCC---CHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCC
Confidence            467888999999999999998632      2679999984221   1123467999999999999999999999999999


Q ss_pred             ceEEEEeeCCCCChhhhhhcCCC--------------CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCLE--------------NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK  694 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~~--------------~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~  694 (833)
                      ..+++|||+++|+|.+++.....              ..+++.++..++.|++.||+|||   ..+|+||||||+||+++
T Consensus        82 ~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH---~~~i~H~dlkp~Nil~~  158 (283)
T cd05048          82 PTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLS---SHHFVHRDLAARNCLVG  158 (283)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccccceEEEc
Confidence            99999999999999999975321              35889999999999999999999   78899999999999999


Q ss_pred             CCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHH
Q 003296          695 SLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVL  773 (833)
Q Consensus       695 ~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~  773 (833)
                      +++.+||+|||+++...............+++.|||||++.+..++.++|||||||++|||++ |..||.+.... +...
T Consensus       159 ~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~~-~~~~  237 (283)
T cd05048         159 EGLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQ-EVIE  237 (283)
T ss_pred             CCCcEEECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCHH-HHHH
Confidence            999999999999986543322222234567889999999988889999999999999999998 99999754321 1111


Q ss_pred             HhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          774 RNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      . ... ....        .   .....+.++.+++.+||+.||++||+++||+++|+.+
T Consensus       238 ~-i~~-~~~~--------~---~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~~  283 (283)
T cd05048         238 M-IRS-RQLL--------P---CPEDCPARVYALMIECWNEIPARRPRFKDIHTRLRSW  283 (283)
T ss_pred             H-HHc-CCcC--------C---CcccCCHHHHHHHHHHccCChhhCcCHHHHHHHHhcC
Confidence            1 111 0000        0   0123456788999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=8.7e-41  Score=355.06  Aligned_cols=263  Identities=17%  Similarity=0.224  Sum_probs=200.8

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|...+.||+|+||.||+|... ++..||+|+++...   .......+.+|++++++++|||||++++++..++..++||
T Consensus         6 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~   82 (288)
T cd07871           6 TYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEH---EEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVF   82 (288)
T ss_pred             cceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccc---cCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEE
Confidence            5777899999999999999974 78999999984221   1223457889999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++ +|.+++... ...+++..+..++.|++.||+|||   +.+|+||||||+||++++++.+|++|||+++......
T Consensus        83 e~~~~-~l~~~l~~~-~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~  157 (288)
T cd07871          83 EYLDS-DLKQYLDNC-GNLMSMHNVKIFMFQLLRGLSYCH---KRKILHRDLKPQNLLINEKGELKLADFGLARAKSVPT  157 (288)
T ss_pred             eCCCc-CHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEECcCcceeeccCCC
Confidence            99975 999988753 335789999999999999999999   7899999999999999999999999999998653222


Q ss_pred             CCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHH--hhcc--ccccc------
Q 003296          715 STGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLR--NSAQ--QDKLD------  783 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~--~~~~--~~~~~------  783 (833)
                      .  ......||+.|+|||++.+ ..++.++||||+||++|||+||+.||.+..........  ....  .+...      
T Consensus       158 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (288)
T cd07871         158 K--TYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEETWPGITSNE  235 (288)
T ss_pred             c--cccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhccccch
Confidence            1  2234578999999998865 56899999999999999999999999754432221111  0000  00000      


Q ss_pred             ---ccccccccCCch--hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          784 ---HILDFNVSRTSL--AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       784 ---~~~~~~~~~~~~--~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                         ....+.......  .......++.+++.+|++.||++|||++|+++|
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~h  285 (288)
T cd07871         236 EFRSYLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAALRH  285 (288)
T ss_pred             hhhccccCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence               000000000000  001124567899999999999999999999875

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=1.3e-40  Score=356.60  Aligned_cols=264  Identities=16%  Similarity=0.226  Sum_probs=201.0

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||.||+|... +|+.||||++....   .......+.+|++++++++|||||++++++..++..++|
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv   81 (303)
T cd07869           5 DSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQE---EEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLV   81 (303)
T ss_pred             ccceEeeeEEecCCEEEEEEEECCCCCEEEEEEecccc---ccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEE
Confidence            56888899999999999999975 78999999984221   122345678999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||++ |+|.+++... ...+++..+..++.|++.||+|||   +.+|+||||||+||++++++.+||+|||+++.....
T Consensus        82 ~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~  156 (303)
T cd07869          82 FEYVH-TDLCQYMDKH-PGGLHPENVKLFLFQLLRGLSYIH---QRYILHRDLKPQNLLISDTGELKLADFGLARAKSVP  156 (303)
T ss_pred             EECCC-cCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEECCCCcceeccCC
Confidence            99996 6888888653 345889999999999999999999   789999999999999999999999999999765322


Q ss_pred             CCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccc-----ccc---
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDK-----LDH---  784 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~-----~~~---  784 (833)
                      ..  ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+..+..............     ...   
T Consensus       157 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (303)
T cd07869         157 SH--TYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHS  234 (303)
T ss_pred             Cc--cCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhCCCChhhccchhh
Confidence            21  2234678999999998865 458899999999999999999999998654443322211110000     000   


Q ss_pred             --ccccc-ccC-CchhHH------HHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          785 --ILDFN-VSR-TSLAVR------SQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       785 --~~~~~-~~~-~~~~~~------~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        ..++. ... ......      .....+.+++.+|++.||++|||++|+++|
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~h  288 (303)
T cd07869         235 LPHFKPERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALSH  288 (303)
T ss_pred             ccccccccccccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHHhcC
Confidence              00000 000 000000      112467899999999999999999999875

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=1.6e-40  Score=348.80  Aligned_cols=257  Identities=16%  Similarity=0.197  Sum_probs=203.5

Q ss_pred             HHhcCCccccccCcccEEEEEEcC----CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP----SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS  629 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~  629 (833)
                      .++|+..+.||+|+||.||+|++.    .+..||+|.++....   ....+.|.+|+.++++++|||||++++++..++.
T Consensus         4 ~~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~   80 (266)
T cd05064           4 NKSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCS---DKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNT   80 (266)
T ss_pred             hHHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCC---HHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCC
Confidence            356788899999999999999853    467899999853211   1224679999999999999999999999999999


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                      .++||||+++|+|.+++... ...++|.+++.++.|++.||+|||   +.+++||||||+||+++.++.+|++|||.+..
T Consensus        81 ~~lv~e~~~~~~L~~~l~~~-~~~l~~~~~~~~~~~i~~al~~lH---~~~iiH~dikp~nili~~~~~~~l~dfg~~~~  156 (266)
T cd05064          81 MMIVTEYMSNGALDSFLRKH-EGQLVAGQLMGMLPGLASGMKYLS---EMGYVHKGLAAHKVLVNSDLVCKISGFRRLQE  156 (266)
T ss_pred             cEEEEEeCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHH---HCCEeeccccHhhEEEcCCCcEEECCCccccc
Confidence            99999999999999999753 346899999999999999999999   78999999999999999999999999998765


Q ss_pred             eCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ....... ......++..|+|||++.+..++.++|||||||++||+++ |+.||.+.... ...... ......      
T Consensus       157 ~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~~-~~~~~~-~~~~~~------  227 (266)
T cd05064         157 DKSEAIY-TTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSGQ-DVIKAV-EDGFRL------  227 (266)
T ss_pred             ccccchh-cccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCHH-HHHHHH-HCCCCC------
Confidence            4222111 1122345778999999988899999999999999999775 99999754322 111111 110000      


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ..      ....+..+.+++.+||+.+|++||+++||.+.|.++
T Consensus       228 ~~------~~~~~~~~~~li~~c~~~~p~~RP~~~~i~~~l~~~  265 (266)
T cd05064         228 PA------PRNCPNLLHQLMLDCWQKERGERPRFSQIHSILSKM  265 (266)
T ss_pred             CC------CCCCCHHHHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence            00      112345678899999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-41  Score=336.71  Aligned_cols=266  Identities=19%  Similarity=0.231  Sum_probs=207.6

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC-----C
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS-----D  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~-----~  628 (833)
                      ..|...+.||+|+||.|.+|.. .+|..||||++..  ........++-.||+++|+.++|+|||.+++.+..+     .
T Consensus        22 ~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~--~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~   99 (359)
T KOG0660|consen   22 RYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILN--PFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFN   99 (359)
T ss_pred             ceecccccccCcceeeEEEEEEcCCCCEeehhhhhh--hhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccc
Confidence            3455568899999999999997 5899999999941  122233467889999999999999999999998762     4


Q ss_pred             ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeee
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK  708 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~  708 (833)
                      .+|+|+|+|+. ||...++.  +..++......++.|+++||.|+|   +.+|+|||+||+|++++.+...||+|||+|+
T Consensus       100 DvYiV~elMet-DL~~iik~--~~~L~d~H~q~f~YQiLrgLKyiH---SAnViHRDLKPsNll~n~~c~lKI~DFGLAR  173 (359)
T KOG0660|consen  100 DVYLVFELMET-DLHQIIKS--QQDLTDDHAQYFLYQILRGLKYIH---SANVIHRDLKPSNLLLNADCDLKICDFGLAR  173 (359)
T ss_pred             eeEEehhHHhh-HHHHHHHc--CccccHHHHHHHHHHHHHhcchhh---cccccccccchhheeeccCCCEEecccccee
Confidence            58999999955 99999986  345888899999999999999999   8899999999999999999999999999999


Q ss_pred             eeCCCCCCCcccccccccccccccccc-CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc----ccc
Q 003296          709 VIDPSKSTGSLSTVAGSVGYIPPEYAY-TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD----KLD  783 (833)
Q Consensus       709 ~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~----~~~  783 (833)
                      ..........++..+.|.+|.|||++. ...|+.+.||||.|||+.||++|++-|.+.+...+.-.....-+.    .+.
T Consensus       174 ~~~~~~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~l~  253 (359)
T KOG0660|consen  174 YLDKFFEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSEEDLQ  253 (359)
T ss_pred             eccccCcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCHHHHH
Confidence            886543334557788999999999876 567999999999999999999999999877665543222111111    011


Q ss_pred             ccc--------cc--cccCC--chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          784 HIL--------DF--NVSRT--SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       784 ~~~--------~~--~~~~~--~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .+-        ..  ..++.  ........+.+++++.+||..||.+|+|++|+++|
T Consensus       254 ~i~s~~ar~yi~slp~~p~~~f~~~fp~a~p~AidLlekmL~fdP~kRita~eAL~h  310 (359)
T KOG0660|consen  254 KIRSEKARPYIKSLPQIPKQPFSSIFPNANPLAIDLLEKMLVFDPKKRITAEEALAH  310 (359)
T ss_pred             HhccHHHHHHHHhCCCCCCCCHHHHcCCCCHHHHHHHHHHhccCccccCCHHHHhcC
Confidence            111        00  00000  01112234678999999999999999999999876

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=4.9e-41  Score=371.16  Aligned_cols=256  Identities=15%  Similarity=0.192  Sum_probs=199.2

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      .|+..+.||+|+||+||+|.. .+|+.||||++.. .........+.+.+|++++++++|||||++++++.+++..|+||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~-~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~   80 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRK-KDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM   80 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEH-HHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEE
Confidence            467788999999999999986 5789999999942 22222233567899999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      |||++|+|.+++..  ...+++..+..++.|++.||+|||   ..+|+||||||+|||++.++.+|++|||+++......
T Consensus        81 E~~~gg~L~~~l~~--~~~~~e~~~~~~~~qi~~aL~~LH---~~givHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~  155 (381)
T cd05626          81 DYIPGGDMMSLLIR--MEVFPEVLARFYIAELTLAIESVH---KMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTH  155 (381)
T ss_pred             ecCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCcHHHEEECCCCCEEEeeCcCCccccccc
Confidence            99999999999976  346889999999999999999999   7899999999999999999999999999976431100


Q ss_pred             C---------------------------------------------CCccccccccccccccccccCCcccccCcchhhH
Q 003296          715 S---------------------------------------------TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFG  749 (833)
Q Consensus       715 ~---------------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~G  749 (833)
                      .                                             .......+||+.|||||++.+..++.++||||||
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG  235 (381)
T cd05626         156 NSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVG  235 (381)
T ss_pred             ccccccccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceeehh
Confidence            0                                             0001235799999999999888899999999999


Q ss_pred             HHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHh--ccCCCCCCCCCHHHHHH
Q 003296          750 VILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVA--CVSVSPEARPKMKSVLR  827 (833)
Q Consensus       750 vvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--cl~~dP~~Rps~~evl~  827 (833)
                      |++|||+||+.||............. ......      ..+..    .....++.+++.+  |+..+|..||++.|+++
T Consensus       236 ~il~elltG~~Pf~~~~~~~~~~~i~-~~~~~~------~~~~~----~~~s~~~~dli~~ll~~~~~~~~R~~~~~~l~  304 (381)
T cd05626         236 VILFEMLVGQPPFLAPTPTETQLKVI-NWENTL------HIPPQ----VKLSPEAVDLITKLCCSAEERLGRNGADDIKA  304 (381)
T ss_pred             hHHHHHHhCCCCCcCCCHHHHHHHHH-cccccc------CCCCC----CCCCHHHHHHHHHHccCcccccCCCCHHHHhc
Confidence            99999999999997654322211111 000000      01100    1123467788877  66777777999999987


Q ss_pred             H
Q 003296          828 M  828 (833)
Q Consensus       828 ~  828 (833)
                      |
T Consensus       305 h  305 (381)
T cd05626         305 H  305 (381)
T ss_pred             C
Confidence            5

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=1.3e-40  Score=366.89  Aligned_cols=259  Identities=21%  Similarity=0.253  Sum_probs=203.3

Q ss_pred             HhcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecC
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLAS  627 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~  627 (833)
                      ..|...+.||+|+||.||+|+..      .+..||||+++....   ....+.|.+|++++++++ |||||+++++|...
T Consensus        37 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~---~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~  113 (400)
T cd05105          37 DGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTAR---SSEKQALMSELKIMTHLGPHLNIVNLLGACTKS  113 (400)
T ss_pred             cceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCC---hHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccC
Confidence            45667789999999999999852      235799999953221   223467999999999996 99999999999999


Q ss_pred             CceEEEEeeCCCCChhhhhhcCC---------------------------------------------------------
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCL---------------------------------------------------------  650 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~---------------------------------------------------------  650 (833)
                      +..|+|||||++|+|.++++...                                                         
T Consensus       114 ~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (400)
T cd05105         114 GPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLE  193 (400)
T ss_pred             CceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhh
Confidence            99999999999999999886421                                                         


Q ss_pred             -------------------------------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee
Q 003296          651 -------------------------------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL  693 (833)
Q Consensus       651 -------------------------------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill  693 (833)
                                                           ...++|.++..++.|+++||+|||   ..+|+||||||+||++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivH~dikp~Nill  270 (400)
T cd05105         194 IKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLA---SKNCVHRDLAARNVLL  270 (400)
T ss_pred             hhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChHhEEE
Confidence                                                 124788899999999999999999   7899999999999999


Q ss_pred             CCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHH
Q 003296          694 KSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWV  772 (833)
Q Consensus       694 ~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~  772 (833)
                      ++++.+|++|||+++...............|++.|||||++.+..++.++|||||||++|||++ |..||..........
T Consensus       271 ~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~~~~  350 (400)
T cd05105         271 AQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDSTFY  350 (400)
T ss_pred             eCCCEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchhHHHH
Confidence            9999999999999987643322212233467889999999988889999999999999999997 999987432211111


Q ss_pred             HHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          773 LRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                       .........      ..      ....+.++.+++.+||+.||++||++.+|.++|+++
T Consensus       351 -~~~~~~~~~------~~------~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~l~~l  397 (400)
T cd05105         351 -NKIKSGYRM------AK------PDHATQEVYDIMVKCWNSEPEKRPSFLHLSDIVESL  397 (400)
T ss_pred             -HHHhcCCCC------CC------CccCCHHHHHHHHHHCccCHhHCcCHHHHHHHHHHH
Confidence             111111000      00      112345788999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=1.1e-40  Score=360.69  Aligned_cols=246  Identities=19%  Similarity=0.216  Sum_probs=197.8

Q ss_pred             cccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCCC
Q 003296          561 NVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPK  639 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~  639 (833)
                      +.||+|+||.||+|.. .+|+.||+|++.. ...........+.+|++++++++||||+++++++..++..|+||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~-~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   79 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKK-EVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANG   79 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEH-HHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            4689999999999996 4799999999942 2222223346788999999999999999999999999999999999999


Q ss_pred             CChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCcc
Q 003296          640 GTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL  719 (833)
Q Consensus       640 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~  719 (833)
                      |+|.+++..  ...+++.++..++.|++.||+|||+  ..+|+||||||+|||+++++.+||+|||+++.......  ..
T Consensus        80 ~~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~lH~--~~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~--~~  153 (325)
T cd05594          80 GELFFHLSR--ERVFSEDRARFYGAEIVSALDYLHS--EKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGA--TM  153 (325)
T ss_pred             CcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHh--cCCEEecCCCCCeEEECCCCCEEEecCCCCeecCCCCc--cc
Confidence            999999875  3468999999999999999999993  26899999999999999999999999999876432221  22


Q ss_pred             ccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHH
Q 003296          720 STVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRS  799 (833)
Q Consensus       720 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  799 (833)
                      ....||+.|||||++.+..++.++|||||||++|||+||+.||.+.... ...........        .++      ..
T Consensus       154 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~~-~~~~~i~~~~~--------~~p------~~  218 (325)
T cd05594         154 KTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE-KLFELILMEEI--------RFP------RT  218 (325)
T ss_pred             ccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCCCHH-HHHHHHhcCCC--------CCC------CC
Confidence            3467999999999999889999999999999999999999999754332 11111111100        011      11


Q ss_pred             HHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296          800 QMLTVLKVAVACVSVSPEARP-----KMKSVLRM  828 (833)
Q Consensus       800 ~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~  828 (833)
                      ...++.+++.+||+.||++|+     ++.|+++|
T Consensus       219 ~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h  252 (325)
T cd05594         219 LSPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQH  252 (325)
T ss_pred             CCHHHHHHHHHHhhcCHHHhCCCCCCCHHHHhcC
Confidence            234678899999999999996     89999875

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=8.3e-41  Score=367.10  Aligned_cols=256  Identities=16%  Similarity=0.188  Sum_probs=203.5

Q ss_pred             HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      .++|+..+.||+|+||.||+|+.. +|+.||||++. +.........+.+.+|+++++.++|||||++++++.+++..|+
T Consensus        42 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~-~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~l  120 (370)
T cd05596          42 AEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLS-KFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYM  120 (370)
T ss_pred             HHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEE-HHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEE
Confidence            467888999999999999999974 78999999994 2222222334568899999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      |||||++|+|.++++.   ..+++..+..++.|++.||+|||   +.+|+||||||+|||+++++.+||+|||+++....
T Consensus       121 v~Ey~~gg~L~~~l~~---~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~  194 (370)
T cd05596         121 VMEYMPGGDLVNLMSN---YDIPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDA  194 (370)
T ss_pred             EEcCCCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEcCCCCEEEEeccceeeccC
Confidence            9999999999999875   34778888889999999999999   78999999999999999999999999999987643


Q ss_pred             CCCCCccccccccccccccccccCC----cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTM----RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~----~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ... ......+||+.|||||++.+.    .++.++|||||||++|||++|+.||.+......+... .......      
T Consensus       195 ~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i-~~~~~~~------  266 (370)
T cd05596         195 NGM-VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKI-MDHKNSL------  266 (370)
T ss_pred             CCc-ccCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCCHHHHHHHH-HcCCCcC------
Confidence            221 122356799999999988643    3789999999999999999999999865443222211 1110000      


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCC--CCCHHHHHHH
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEA--RPKMKSVLRM  828 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~--Rps~~evl~~  828 (833)
                      ..+.    ....+.++.+++.+|++.+|++  ||++.|+++|
T Consensus       267 ~~~~----~~~~s~~~~~li~~~L~~~p~r~~R~s~~ell~h  304 (370)
T cd05596         267 TFPD----DIEISKQAKDLICAFLTDREVRLGRNGVDEIKSH  304 (370)
T ss_pred             CCCC----cCCCCHHHHHHHHHHccChhhccCCCCHHHHhcC
Confidence            0010    1123457789999999999998  9999999875

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=2.3e-40  Score=356.91  Aligned_cols=245  Identities=22%  Similarity=0.255  Sum_probs=197.1

Q ss_pred             cccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEEEEeeCC
Q 003296          561 NVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~lv~ey~~  638 (833)
                      ++||+|+||.||+|+.. +|+.||||++. +.........+.+.+|++++.++ +||||+++++++...+..|+||||++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~-~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~   79 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLK-KDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVN   79 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEE-HHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCC
Confidence            36899999999999974 78999999994 22222333456788999999877 69999999999999999999999999


Q ss_pred             CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCc
Q 003296          639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS  718 (833)
Q Consensus       639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~  718 (833)
                      +|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++.......  .
T Consensus        80 ~g~L~~~i~~--~~~l~~~~~~~~~~ql~~~L~~lH---~~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~--~  152 (320)
T cd05590          80 GGDLMFHIQK--SRRFDEARARFYAAEITSALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGK--T  152 (320)
T ss_pred             CchHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCC--c
Confidence            9999999876  346899999999999999999999   78999999999999999999999999999876432221  2


Q ss_pred             cccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHH
Q 003296          719 LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVR  798 (833)
Q Consensus       719 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (833)
                      .....||+.|||||++.+..++.++|||||||++|||++|+.||....... ..........        ..+      .
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~-~~~~i~~~~~--------~~~------~  217 (320)
T cd05590         153 TSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENEDD-LFEAILNDEV--------VYP------T  217 (320)
T ss_pred             ccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHH-HHHHHhcCCC--------CCC------C
Confidence            245679999999999998889999999999999999999999997544322 2111111100        000      0


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCH------HHHHHH
Q 003296          799 SQMLTVLKVAVACVSVSPEARPKM------KSVLRM  828 (833)
Q Consensus       799 ~~~~~~~~l~~~cl~~dP~~Rps~------~evl~~  828 (833)
                      ....++.+++.+|++.||++||++      +++++|
T Consensus       218 ~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~~~~h  253 (320)
T cd05590         218 WLSQDAVDILKAFMTKNPTMRLGSLTLGGEEAILRH  253 (320)
T ss_pred             CCCHHHHHHHHHHcccCHHHCCCCCCCCCHHHHHcC
Confidence            123467899999999999999998      666654

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-40  Score=356.05  Aligned_cols=256  Identities=21%  Similarity=0.227  Sum_probs=215.0

Q ss_pred             HHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCCc
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASDS  629 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~~  629 (833)
                      .....|+..+.+|+|.||.||+|+.+ +|+.+|+|.+.++ ..........+.+|+++|+++. |||||.++++|++.+.
T Consensus        32 ~~~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~-~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~  110 (382)
T KOG0032|consen   32 DIKEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKR-KLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDS  110 (382)
T ss_pred             cccccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehh-hccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCe
Confidence            44566788899999999999999986 5999999999533 3222234578999999999998 9999999999999999


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC----CCceeccce
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL----KEPQIGDIE  705 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~----~~~ki~dfg  705 (833)
                      +++|||+|.||.|++.+...   .+++..+..++.|++.|+.|||   ..+|+|||+||+|+|+...    +.+|++|||
T Consensus       111 ~~lvmEL~~GGeLfd~i~~~---~~sE~da~~~~~~il~av~~lH---~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFG  184 (382)
T KOG0032|consen  111 VYLVMELCEGGELFDRIVKK---HYSERDAAGIIRQILEAVKYLH---SLGVVHRDLKPENLLLASKDEGSGRIKLIDFG  184 (382)
T ss_pred             EEEEEEecCCchHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHH---hCCceeccCCHHHeeeccccCCCCcEEEeeCC
Confidence            99999999999999999864   3899999999999999999999   7899999999999999643    479999999


Q ss_pred             eeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccc
Q 003296          706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHI  785 (833)
Q Consensus       706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~  785 (833)
                      +++.....   ......+||++|+|||++....|+.++||||.||++|.|++|.+||.+............         
T Consensus       185 la~~~~~~---~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~~~i~~---------  252 (382)
T KOG0032|consen  185 LAKFIKPG---ERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFEIFLAILR---------  252 (382)
T ss_pred             CceEccCC---ceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhHHHHHHHc---------
Confidence            99988652   245778999999999999999999999999999999999999999987664433332111         


Q ss_pred             ccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          786 LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       786 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        .........+...+..+.+++.+|+..||.+|+|+.++++|
T Consensus       253 --~~~~f~~~~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~H  293 (382)
T KOG0032|consen  253 --GDFDFTSEPWDDISESAKDFIRKLLEFDPRKRLTAAQALQH  293 (382)
T ss_pred             --CCCCCCCCCccccCHHHHHHHHHhcccCcccCCCHHHHhcC
Confidence              11112222344567788899999999999999999999986

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-41  Score=367.41  Aligned_cols=254  Identities=19%  Similarity=0.294  Sum_probs=209.3

Q ss_pred             cCCccccccCcccEEEEEEcC----CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          557 ANPLNVELKTRFSTYYKAVMP----SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      -.+.++||.|-||.||+|.++    ....||||.++...   .++.+.+|..|+.||.+++||||+++.|+.......+|
T Consensus       631 i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~Gy---tekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMI  707 (996)
T KOG0196|consen  631 VKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGY---TEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMI  707 (996)
T ss_pred             eEEEEEEecccccceecccccCCCCcceeEEEeeeccCc---cHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeEE
Confidence            356799999999999999985    34689999995322   23456899999999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      |.|||+||+|+.+|+... +.++|.+...+.++||.|+.||-   .++.|||||...|||++.+..+||+|||+++.+.+
T Consensus       708 iTEyMENGsLDsFLR~~D-GqftviQLVgMLrGIAsGMkYLs---dm~YVHRDLAARNILVNsnLvCKVsDFGLSRvled  783 (996)
T KOG0196|consen  708 ITEYMENGSLDSFLRQND-GQFTVIQLVGMLRGIASGMKYLS---DMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLED  783 (996)
T ss_pred             EhhhhhCCcHHHHHhhcC-CceEeehHHHHHHHHHHHhHHHh---hcCchhhhhhhhheeeccceEEEeccccceeeccc
Confidence            999999999999999764 45999999999999999999999   88999999999999999999999999999998854


Q ss_pred             CCCCCccccccc--cccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          713 SKSTGSLSTVAG--SVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       713 ~~~~~~~~~~~g--t~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      +... ..++..|  ..+|.|||.+...+++.++||||||||+||.++ |.+||.+...-  -+.....++.++       
T Consensus       784 d~~~-~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmSNQ--dVIkaIe~gyRL-------  853 (996)
T KOG0196|consen  784 DPEA-AYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQ--DVIKAIEQGYRL-------  853 (996)
T ss_pred             CCCc-cccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCcccccchH--HHHHHHHhccCC-------
Confidence            4322 2222223  468999999999999999999999999999775 99999754331  122222222221       


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                       +    .+.+++..+-+|++.||++|-.+||++.||+.+|.++
T Consensus       854 -P----pPmDCP~aL~qLMldCWqkdR~~RP~F~qiV~~lDkl  891 (996)
T KOG0196|consen  854 -P----PPMDCPAALYQLMLDCWQKDRNRRPKFAQIVSTLDKL  891 (996)
T ss_pred             -C----CCCCCcHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence             1    1235677888999999999999999999999998763

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=5e-40  Score=344.25  Aligned_cols=256  Identities=18%  Similarity=0.267  Sum_probs=208.1

Q ss_pred             HHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      .++|+..+.||+|+||.||+|...+++.||+|++....     ...+.|.+|+.++++++||||+++++++...+..++|
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~-----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   79 (261)
T cd05072           5 RESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGT-----MSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYII   79 (261)
T ss_pred             hHHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCc-----hhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEE
Confidence            35688889999999999999998888999999984221     1246899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.++++......+++.++..++.|+++||+|||   ..+++||||||+||++++++.+|++|||+++.....
T Consensus        80 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH---~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~  156 (261)
T cd05072          80 TEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIE---RKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDN  156 (261)
T ss_pred             EecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccchhhEEecCCCcEEECCCccceecCCC
Confidence            99999999999998654557899999999999999999999   788999999999999999999999999999876432


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      ... ......++..|+|||++.+..++.++|||||||++|||+| |+.||.+..... ..... ......        ..
T Consensus       157 ~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~-~~~~~-~~~~~~--------~~  225 (261)
T cd05072         157 EYT-AREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNSD-VMSAL-QRGYRM--------PR  225 (261)
T ss_pred             cee-ccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCHHH-HHHHH-HcCCCC--------CC
Confidence            211 1123456778999999988889999999999999999999 999997533211 11111 110000        00


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                          ....+.++.+++.+|++.+|++||+++++.+.|+++
T Consensus       226 ----~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  261 (261)
T cd05072         226 ----MENCPDELYDIMKTCWKEKAEERPTFDYLQSVLDDF  261 (261)
T ss_pred             ----CCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHhcC
Confidence                012234678999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=2.8e-40  Score=356.69  Aligned_cols=245  Identities=20%  Similarity=0.231  Sum_probs=197.5

Q ss_pred             cccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEEEEeeCC
Q 003296          561 NVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~lv~ey~~  638 (833)
                      ++||+|+||.||+|+.. +|+.||||++. ..........+.+..|++++..+ +||||+++++++..++..|+||||++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~-~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~   79 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLK-KDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVN   79 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEe-HHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCC
Confidence            46999999999999974 68999999994 22222233456788999999876 79999999999999999999999999


Q ss_pred             CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCc
Q 003296          639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS  718 (833)
Q Consensus       639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~  718 (833)
                      +|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+||++++++.+||+|||+++.......  .
T Consensus        80 ~~~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~--~  152 (321)
T cd05591          80 GGDLMFQIQR--SRKFDEPRSRFYAAEVTLALMFLH---RHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGV--T  152 (321)
T ss_pred             CCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEEeecccceecccCCc--c
Confidence            9999999875  346899999999999999999999   78999999999999999999999999999876432221  2


Q ss_pred             cccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHH
Q 003296          719 LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVR  798 (833)
Q Consensus       719 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (833)
                      .....||+.|+|||++.+..++.++|||||||++|||++|+.||....... ...........        .+      .
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~~~-~~~~i~~~~~~--------~p------~  217 (321)
T cd05591         153 TTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNEDD-LFESILHDDVL--------YP------V  217 (321)
T ss_pred             ccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCCHHH-HHHHHHcCCCC--------CC------C
Confidence            245679999999999998889999999999999999999999997554322 22111111000        00      0


Q ss_pred             HHHHHHHHHHHhccCCCCCCCC-------CHHHHHHH
Q 003296          799 SQMLTVLKVAVACVSVSPEARP-------KMKSVLRM  828 (833)
Q Consensus       799 ~~~~~~~~l~~~cl~~dP~~Rp-------s~~evl~~  828 (833)
                      ....++.+++.+|++.||++||       ++++++++
T Consensus       218 ~~~~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~h  254 (321)
T cd05591         218 WLSKEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQH  254 (321)
T ss_pred             CCCHHHHHHHHHHhccCHHHcCCCCCCCCCHHHHhcC
Confidence            1234678999999999999999       88888765

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.2e-40  Score=351.35  Aligned_cols=253  Identities=21%  Similarity=0.234  Sum_probs=203.1

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|+..+.||+|+||.||++.. .+++.||||++... ..........+.+|++++++++|||||++++++..++..++||
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   79 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKK-RIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVL   79 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehh-hhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEE
Confidence            366778999999999999997 47899999999422 2222223456889999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.+++.......+++..+..++.|++.|+.|||   +.+|+||||||+||++++++.++++|||+++......
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~  156 (285)
T cd05605          80 TLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLH---RERIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGE  156 (285)
T ss_pred             eccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHH---HCCcEecCCCHHHEEECCCCCEEEeeCCCceecCCCC
Confidence            9999999999887544456899999999999999999999   7889999999999999999999999999998764322


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHH--HHHhhcccccccccccccccC
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKW--VLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      .   .....||+.|||||++.+..++.++||||+||++|||++|+.||.+......+  +...... .  .    ..   
T Consensus       157 ~---~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~-~--~----~~---  223 (285)
T cd05605         157 T---IRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKREEVERRVKE-D--Q----EE---  223 (285)
T ss_pred             c---cccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhhHHHHHHHHhhh-c--c----cc---
Confidence            1   13457999999999998888999999999999999999999999754332111  1110000 0  0    00   


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARP-----KMKSVLRM  828 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~  828 (833)
                         .....+..+.+++.+||+.||++||     +++|++++
T Consensus       224 ---~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~  261 (285)
T cd05605         224 ---YSEKFSEAARSICRQLLTKDPGFRLGCRGEGAEEVKAH  261 (285)
T ss_pred             ---cCcccCHHHHHHHHHHccCCHHHhcCCCCCCHHHHhcC
Confidence               0112345678999999999999999     88898765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=1.6e-40  Score=351.57  Aligned_cols=249  Identities=18%  Similarity=0.193  Sum_probs=197.2

Q ss_pred             cccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCCCCC
Q 003296          563 ELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGT  641 (833)
Q Consensus       563 ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~g~  641 (833)
                      ||+|+||+||+|... +|+.||||++... ........+.+..|++++++++||||+++.+++..++..|+|||||++|+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~-~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~   79 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKK-RLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGD   79 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHH-HHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCC
Confidence            699999999999974 7899999999422 22222234678899999999999999999999999999999999999999


Q ss_pred             hhhhhhcC--CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCcc
Q 003296          642 LFDVLHGC--LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL  719 (833)
Q Consensus       642 L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~  719 (833)
                      |.+++...  ....+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+|++|||+++.......  ..
T Consensus        80 L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~--~~  154 (280)
T cd05608          80 LRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLH---QRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQS--KT  154 (280)
T ss_pred             HHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEeeCccceecCCCCc--cc
Confidence            99887542  2346899999999999999999999   78999999999999999999999999999987643322  22


Q ss_pred             ccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHH
Q 003296          720 STVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRS  799 (833)
Q Consensus       720 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  799 (833)
                      ....||+.|+|||++.+..++.++|||||||++|||++|+.||.............       ..+......    ....
T Consensus       155 ~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~-------~~~~~~~~~----~~~~  223 (280)
T cd05608         155 KGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELK-------QRILNDSVT----YPDK  223 (280)
T ss_pred             cccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcchhHHHHH-------HhhcccCCC----Cccc
Confidence            34679999999999999999999999999999999999999997543221111000       000000000    0112


Q ss_pred             HHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296          800 QMLTVLKVAVACVSVSPEARP-----KMKSVLRM  828 (833)
Q Consensus       800 ~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~  828 (833)
                      .+.++.+++.+||+.||++||     +++|+++|
T Consensus       224 ~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~l~h  257 (280)
T cd05608         224 FSPASKSFCEALLAKDPEKRLGFRDGNCDGLRTH  257 (280)
T ss_pred             CCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHhcC
Confidence            345678999999999999999     77888765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=9.7e-41  Score=366.47  Aligned_cols=256  Identities=15%  Similarity=0.188  Sum_probs=197.5

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|+..+.||+|+||+||+|.. .+|+.||||++... ..........+.+|++++.+++|||||++++++.+.+..|+||
T Consensus         2 ~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~   80 (363)
T cd05628           2 DFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKA-DMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIM   80 (363)
T ss_pred             CceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHH-HHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEE
Confidence            577889999999999999986 47899999999422 2222233467889999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      |||++|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||+++......
T Consensus        81 E~~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~lH---~~givHrDlKp~NILi~~~~~vkL~DFGla~~~~~~~  155 (363)
T cd05628          81 EFLPGGDMMTLLMK--KDTLTEEETQFYIAETVLAIDSIH---QLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAH  155 (363)
T ss_pred             cCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCeEecCCCHHHeEECCCCCEEEeeccCcccccccc
Confidence            99999999999976  356899999999999999999999   7899999999999999999999999999987543211


Q ss_pred             CC---------------------------------CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCc
Q 003296          715 ST---------------------------------GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTA  761 (833)
Q Consensus       715 ~~---------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p  761 (833)
                      ..                                 ......+||+.|||||++.+..++.++|||||||++|||++|+.|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~P  235 (363)
T cd05628         156 RTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPP  235 (363)
T ss_pred             cccccccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCC
Confidence            00                                 011245899999999999988999999999999999999999999


Q ss_pred             ccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccC--CCCCCCCCHHHHHHH
Q 003296          762 VNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVS--VSPEARPKMKSVLRM  828 (833)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~--~dP~~Rps~~evl~~  828 (833)
                      |.+......+.... .....   .   .++...    ....++.+++.+++.  .++..||+++||++|
T Consensus       236 f~~~~~~~~~~~i~-~~~~~---~---~~p~~~----~~s~~~~~li~~l~~~~~~r~~r~~~~ei~~h  293 (363)
T cd05628         236 FCSETPQETYKKVM-NWKET---L---IFPPEV----PISEKAKDLILRFCCEWEHRIGAPGVEEIKTN  293 (363)
T ss_pred             CCCCCHHHHHHHHH-cCcCc---c---cCCCcC----CCCHHHHHHHHHHcCChhhcCCCCCHHHHhCC
Confidence            97654332222111 10000   0   011000    122355666666433  334456999999876

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.3e-41  Score=368.81  Aligned_cols=255  Identities=17%  Similarity=0.222  Sum_probs=201.3

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|+..+.||+|+||.||+|+.. +|+.||||++... ........+.+.+|++++++++|||||+++++|.+++..|+||
T Consensus         2 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (364)
T cd05599           2 DFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKS-EMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIM   80 (364)
T ss_pred             CceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHH-HhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEE
Confidence            5778899999999999999974 7899999999422 2222233467889999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      |||++|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+|||++.++.+|++|||+++......
T Consensus        81 E~~~~g~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~  155 (364)
T cd05599          81 EYLPGGDMMTLLMK--KDTFTEEETRFYIAETILAIDSIH---KLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSH  155 (364)
T ss_pred             CCCCCcHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeEECCCCCEEEeecccceeccccc
Confidence            99999999999976  346899999999999999999999   7899999999999999999999999999987653211


Q ss_pred             CC------------------------------------CccccccccccccccccccCCcccccCcchhhHHHHHHHHhC
Q 003296          715 ST------------------------------------GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTG  758 (833)
Q Consensus       715 ~~------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg  758 (833)
                      ..                                    ......+||+.|||||++.+..++.++|||||||++|||++|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G  235 (364)
T cd05599         156 RTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVG  235 (364)
T ss_pred             cccccccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhcC
Confidence            00                                    001135799999999999988899999999999999999999


Q ss_pred             CCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCC---HHHHHHH
Q 003296          759 KTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPK---MKSVLRM  828 (833)
Q Consensus       759 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps---~~evl~~  828 (833)
                      +.||........ ...........      ..+..    .....++.+++.+|+. +|.+|++   ++|+++|
T Consensus       236 ~~Pf~~~~~~~~-~~~i~~~~~~~------~~~~~----~~~s~~~~~li~~ll~-~p~~R~~~~~~~~ll~h  296 (364)
T cd05599         236 YPPFCSDNPQET-YRKIINWKETL------QFPDE----VPLSPEAKDLIKRLCC-EAERRLGNNGVNEIKSH  296 (364)
T ss_pred             CCCCCCCCHHHH-HHHHHcCCCcc------CCCCC----CCCCHHHHHHHHHHcc-CHhhcCCCCCHHHHhcC
Confidence            999975543221 11111110000      00000    0123467788999996 9999998   9998774

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=2.8e-40  Score=358.28  Aligned_cols=259  Identities=20%  Similarity=0.251  Sum_probs=202.2

Q ss_pred             HhcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecC
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLAS  627 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~  627 (833)
                      +.|+..+.||+|+||.||+|...      +++.||+|+++....   ....+.+.+|++++.++ +|||||+++++|...
T Consensus         7 ~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~---~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~   83 (337)
T cd05054           7 DRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGAT---ASEYKALMTELKILIHIGHHLNVVNLLGACTKP   83 (337)
T ss_pred             HHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCC---HHHHHHHHHHHHHHHhhccCcchhheeeeEecC
Confidence            45778899999999999999742      357899999842211   12245688999999999 899999999998754


Q ss_pred             -CceEEEEeeCCCCChhhhhhcCCC-------------------------------------------------------
Q 003296          628 -DSAYLFYEYAPKGTLFDVLHGCLE-------------------------------------------------------  651 (833)
Q Consensus       628 -~~~~lv~ey~~~g~L~~~l~~~~~-------------------------------------------------------  651 (833)
                       ...++||||+++|+|.+++.....                                                       
T Consensus        84 ~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (337)
T cd05054          84 GGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGD  163 (337)
T ss_pred             CCCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhh
Confidence             568899999999999999864211                                                       


Q ss_pred             ----CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCcccccccccc
Q 003296          652 ----NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVG  727 (833)
Q Consensus       652 ----~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~  727 (833)
                          ..++|..+..++.|++.||+|||   ..+|+||||||+||++++++.+|++|||+++.+.............++..
T Consensus       164 ~~~~~~l~~~~~~~~~~qi~~aL~~lH---~~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~  240 (337)
T cd05054         164 ELYKEPLTLEDLISYSFQVARGMEFLA---SRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLK  240 (337)
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCcc
Confidence                25899999999999999999999   78999999999999999999999999999987643322222234556788


Q ss_pred             ccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHH
Q 003296          728 YIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLK  806 (833)
Q Consensus       728 y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  806 (833)
                      |||||++.+..++.++|||||||++|||++ |+.||.+.......... .......  .    .      ......++.+
T Consensus       241 y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~~~~~~-~~~~~~~--~----~------~~~~~~~~~~  307 (337)
T cd05054         241 WMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDEEFCRR-LKEGTRM--R----A------PEYATPEIYS  307 (337)
T ss_pred             ccCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCccHHHHHH-HhccCCC--C----C------CccCCHHHHH
Confidence            999999999999999999999999999998 99999753321111111 1110000  0    0      0122356789


Q ss_pred             HHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          807 VAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       807 l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ++.+||+.+|++||++.||+++|+++
T Consensus       308 l~~~cl~~~p~~RPs~~ell~~l~~~  333 (337)
T cd05054         308 IMLDCWHNNPEDRPTFSELVEILGDL  333 (337)
T ss_pred             HHHHHccCChhhCcCHHHHHHHHHHH
Confidence            99999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=7.4e-40  Score=343.35  Aligned_cols=255  Identities=16%  Similarity=0.247  Sum_probs=206.8

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      .+|...+.||+|+||.||+|... +++.||+|++...     ....++|.+|++++++++||||++++++|..++..++|
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~-----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (263)
T cd05052           6 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-----TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII   80 (263)
T ss_pred             HHeEEeeecCCcccceEEEEEEecCCceEEEEEecCC-----chHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEE
Confidence            35777889999999999999974 6899999998422     12346799999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++.......++|..++.++.|+++||+|||   ..+++||||||+||++++++.+|++|||+++.....
T Consensus        81 ~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~  157 (263)
T cd05052          81 TEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD  157 (263)
T ss_pred             EEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeecccCcceEEEcCCCcEEeCCCccccccccc
Confidence            99999999999997654556899999999999999999999   789999999999999999999999999999876432


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      ... ......++..|+|||++.+..++.++|||||||++|||++ |..||.+... .+........ .      ..... 
T Consensus       158 ~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~-~~~~~~~~~~-~------~~~~~-  227 (263)
T cd05052         158 TYT-AHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL-SQVYELLEKG-Y------RMERP-  227 (263)
T ss_pred             eee-ccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCH-HHHHHHHHCC-C------CCCCC-
Confidence            211 1122345678999999988889999999999999999998 9999975432 2222111110 0      00110 


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                           ...+.++.+++.+||+.||++||++.|++++|+++
T Consensus       228 -----~~~~~~~~~li~~cl~~~p~~Rp~~~~l~~~l~~~  262 (263)
T cd05052         228 -----EGCPPKVYELMRACWQWNPSDRPSFAEIHQAFETM  262 (263)
T ss_pred             -----CCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence                 12345788999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=1.8e-40  Score=357.74  Aligned_cols=257  Identities=20%  Similarity=0.301  Sum_probs=201.9

Q ss_pred             HHhcCCccccccCcccEEEEEEcC-CCc----eEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP-SGM----SYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD  628 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~----~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~  628 (833)
                      ..+|+..+.||+|+||.||+|++. +|.    .||||+++...   .....++|.+|+.++++++|||||+++|+|... 
T Consensus         6 ~~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-   81 (316)
T cd05108           6 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMASVDNPHVCRLLGICLTS-   81 (316)
T ss_pred             hhhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccC---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-
Confidence            356888999999999999999863 444    48999984221   122346799999999999999999999999864 


Q ss_pred             ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeee
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK  708 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~  708 (833)
                      ..++|+||+++|+|.++++.. ...+++..++.++.|++.||+|||   +.+|+||||||+||++++++.+||+|||+++
T Consensus        82 ~~~~v~e~~~~g~l~~~l~~~-~~~~~~~~~~~~~~qi~~~L~~LH---~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~  157 (316)
T cd05108          82 TVQLITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAKGMNYLE---ERRLVHRDLAARNVLVKTPQHVKITDFGLAK  157 (316)
T ss_pred             CceeeeecCCCCCHHHHHHhc-cccCCHHHHHHHHHHHHHHHHHHH---hcCeeccccchhheEecCCCcEEEccccccc
Confidence            578999999999999999864 345899999999999999999999   7899999999999999999999999999998


Q ss_pred             eeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccccccccc
Q 003296          709 VIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       709 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (833)
                      ...............++..|||||++.+..++.++|||||||++|||++ |+.||.+... .++... .......     
T Consensus       158 ~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~-~~~~~~-~~~~~~~-----  230 (316)
T cd05108         158 LLGADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-SEISSI-LEKGERL-----  230 (316)
T ss_pred             cccCCCcceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCH-HHHHHH-HhCCCCC-----
Confidence            7654332211223345678999999998899999999999999999998 9999975332 121111 1111110     


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                         ...    .....++.+++.+||+.||++||++.|++.++..+
T Consensus       231 ---~~~----~~~~~~~~~li~~cl~~~p~~Rps~~~l~~~l~~~  268 (316)
T cd05108         231 ---PQP----PICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKM  268 (316)
T ss_pred             ---CCC----CCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence               000    11234678899999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=4.2e-40  Score=355.81  Aligned_cols=248  Identities=22%  Similarity=0.257  Sum_probs=196.4

Q ss_pred             cCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHH---hcCCCCCcccceEEEecCCceEE
Q 003296          557 ANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVL---GKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l---~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      |+..+.||+|+||.||+|.. .+|+.||||+++.. ........+.+.+|++++   ++++||||+++++++...+..|+
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~l   79 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKG-DIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCF   79 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHH-HhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEE
Confidence            45678999999999999996 47899999999522 212223345677776665   57789999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||||+++|+|..++++   ..+++..+..++.|++.||+|||   +.+|+||||||+||++++++.+||+|||+++....
T Consensus        80 v~E~~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~al~~lH---~~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~  153 (324)
T cd05589          80 VMEYAAGGDLMMHIHT---DVFSEPRAVFYAACVVLGLQYLH---ENKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMG  153 (324)
T ss_pred             EEcCCCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHH---hCCeEecCCCHHHeEECCCCcEEeCcccCCccCCC
Confidence            9999999999998864   46899999999999999999999   78999999999999999999999999999875432


Q ss_pred             CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      ...  .....+||+.|||||++.+..++.++|||||||++|||++|+.||.+.... +...........        .+ 
T Consensus       154 ~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~~-~~~~~i~~~~~~--------~p-  221 (324)
T cd05589         154 FGD--RTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEE-EVFDSIVNDEVR--------YP-  221 (324)
T ss_pred             CCC--cccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCHH-HHHHHHHhCCCC--------CC-
Confidence            221  224578999999999999888999999999999999999999999754332 222111111000        00 


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARP-----KMKSVLRM  828 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~  828 (833)
                           ......+.+++.+||+.||++||     ++.|++++
T Consensus       222 -----~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~l~~~  257 (324)
T cd05589         222 -----RFLSREAISIMRRLLRRNPERRLGSGEKDAEDVKKQ  257 (324)
T ss_pred             -----CCCCHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhhC
Confidence                 11234677899999999999999     56776654

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=8.5e-40  Score=341.45  Aligned_cols=251  Identities=22%  Similarity=0.301  Sum_probs=202.8

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      ++|+..+.||+|+||.||+|...++..+|+|.+...     ....+.|.+|++++++++||||++++++|..++..++||
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~-----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~   78 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEG-----AMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVT   78 (256)
T ss_pred             HHcEEeeEecCCcCceEEEEEeccCceEEEEecccC-----CccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEE
Confidence            357778899999999999999888889999998422     123467999999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.++++... ..++|..+..++.|++.||+|||   ..+|+||||||+||++++++.+|++|||.++......
T Consensus        79 e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~  154 (256)
T cd05114          79 EFMENGCLLNYLRQRQ-GKLSKDMLLSMCQDVCEGMEYLE---RNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDE  154 (256)
T ss_pred             EcCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHH---HCCccccccCcceEEEcCCCeEEECCCCCccccCCCc
Confidence            9999999999997532 35899999999999999999999   7889999999999999999999999999987653222


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      .. ......++..|+|||++.+..++.++|||||||++|||++ |+.||...... +.+...... ..   ...+.    
T Consensus       155 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~~-~~~~~i~~~-~~---~~~~~----  224 (256)
T cd05114         155 YT-SSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNY-EVVEMISRG-FR---LYRPK----  224 (256)
T ss_pred             ee-ccCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCHH-HHHHHHHCC-CC---CCCCC----
Confidence            11 1123345678999999988889999999999999999999 89999754332 111111111 11   00010    


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML  829 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L  829 (833)
                           ..+.++.+++.+||+.+|++||+++|+++.|
T Consensus       225 -----~~~~~~~~li~~c~~~~p~~Rps~~~l~~~l  255 (256)
T cd05114         225 -----LASMTVYEVMYSCWHEKPEGRPTFAELLRAI  255 (256)
T ss_pred             -----CCCHHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence                 1234678999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=2.5e-40  Score=374.90  Aligned_cols=252  Identities=19%  Similarity=0.170  Sum_probs=202.1

Q ss_pred             hcCCccccccCcccEEEEEEcC-C-CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-S-GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~-~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      .|...+.+|+|+||.||+|... + +..||+|++....    ......+.+|++++++++|||||+++++|..++..|+|
T Consensus        68 ~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~----~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv  143 (478)
T PTZ00267         68 MYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLND----ERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLI  143 (478)
T ss_pred             eEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCC----HHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEE
Confidence            3777899999999999999864 4 6788998873221    12235678899999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcC--CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          634 YEYAPKGTLFDVLHGC--LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      |||+++|+|.++++..  ....+++.++..++.|++.||+|+|   +.+|+||||||+|||++.++.+||+|||+++...
T Consensus       144 ~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~  220 (478)
T PTZ00267        144 MEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVH---SRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYS  220 (478)
T ss_pred             EECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCcCHHhEEECCCCcEEEEeCcCceecC
Confidence            9999999999988642  2346889999999999999999999   7899999999999999999999999999998765


Q ss_pred             CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      ...........+||++|||||++.+..++.++|||||||++|||++|+.||...... +........ . .    ++ . 
T Consensus       221 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~~-~~~~~~~~~-~-~----~~-~-  291 (478)
T PTZ00267        221 DSVSLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQR-EIMQQVLYG-K-Y----DP-F-  291 (478)
T ss_pred             CccccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHhC-C-C----CC-C-
Confidence            433222234567999999999999889999999999999999999999999754322 211111110 0 0    00 0 


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                           ....+.++.+++.+||+.||++||+++|++.+
T Consensus       292 -----~~~~s~~~~~li~~~L~~dP~~Rps~~~~l~~  323 (478)
T PTZ00267        292 -----PCPVSSGMKALLDPLLSKNPALRPTTQQLLHT  323 (478)
T ss_pred             -----CccCCHHHHHHHHHHhccChhhCcCHHHHHhC
Confidence                 01223467899999999999999999999764

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=2.3e-40  Score=358.34  Aligned_cols=247  Identities=15%  Similarity=0.229  Sum_probs=196.6

Q ss_pred             cccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEEEEeeCC
Q 003296          561 NVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~lv~ey~~  638 (833)
                      ++||+|+||.||+|... +++.||||+++. .........+.+.+|+.++.++ +|||||+++++|..++..|+|||||+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~-~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~   79 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKK-ELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVS   79 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEH-HHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCC
Confidence            46899999999999974 789999999942 2222223346788999999998 69999999999999999999999999


Q ss_pred             CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCc
Q 003296          639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS  718 (833)
Q Consensus       639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~  718 (833)
                      +|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++......  ..
T Consensus        80 ~g~L~~~~~~--~~~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~--~~  152 (329)
T cd05588          80 GGDLMFHMQR--QRKLPEEHARFYSAEISLALNFLH---ERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPG--DT  152 (329)
T ss_pred             CCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEECCCCCEEECcCccccccccCC--Cc
Confidence            9999998875  356999999999999999999999   7899999999999999999999999999987532211  12


Q ss_pred             cccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCc-------cHHHHHHHhhccccccccccccccc
Q 003296          719 LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGN-------ELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       719 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      ....+||+.|+|||++.+..++.++|||||||++|||+||+.||+...       ....+.......         ....
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~---------~~~~  223 (329)
T cd05588         153 TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILE---------KQIR  223 (329)
T ss_pred             cccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHc---------CCCC
Confidence            245689999999999999899999999999999999999999996211       111222111111         0000


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCC------HHHHHHH
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPK------MKSVLRM  828 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps------~~evl~~  828 (833)
                      .+    ...+.++.+++.+|++.||++||+      ++|+++|
T Consensus       224 ~p----~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~h  262 (329)
T cd05588         224 IP----RSLSVKASSVLKGFLNKDPKERLGCHPQTGFRDIKSH  262 (329)
T ss_pred             CC----CCCCHHHHHHHHHHhccCHHHcCCCCCCCCHHHHhcC
Confidence            00    122346789999999999999997      6787754

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=5.3e-41  Score=350.74  Aligned_cols=250  Identities=27%  Similarity=0.405  Sum_probs=194.2

Q ss_pred             ccccccCcccEEEEEEcC-----CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          560 LNVELKTRFSTYYKAVMP-----SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       560 ~~~ig~g~~g~vy~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      .+.||.|+||.||+|.+.     .+..|+||.++....   ....+.|.+|++.+++++||||++++|+|...+..++||
T Consensus         4 ~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~---~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~   80 (259)
T PF07714_consen    4 IKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSS---EEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVM   80 (259)
T ss_dssp             EEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSS---HHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEE
T ss_pred             eeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccc---cccceeeeecccccccccccccccccccccccccccccc
Confidence            468999999999999975     367899999943211   122578999999999999999999999999888899999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      |||++|+|.++++......++|.++..|+.|+|+||+|||   +.+++|+||+++||++++++.+||+|||+++......
T Consensus        81 e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh---~~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~  157 (259)
T PF07714_consen   81 EYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLH---SNNIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKS  157 (259)
T ss_dssp             E--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHH---HTTEEEST-SGGGEEEETTTEEEEESTTTGEETTTSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999864567999999999999999999999   7789999999999999999999999999998763222


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      .........+...|+|||++.+..++.++||||||+++||+++ |+.||.+. ...++.... .+.....      ..  
T Consensus       158 ~~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~-~~~~~~~~~-~~~~~~~------~~--  227 (259)
T PF07714_consen  158 KYKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDY-DNEEIIEKL-KQGQRLP------IP--  227 (259)
T ss_dssp             SEEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTS-CHHHHHHHH-HTTEETT------SB--
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc-cccccce------ec--
Confidence            2112233457789999999998889999999999999999999 78888654 223322222 1111110      00  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML  829 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L  829 (833)
                          ...+..+.+++.+||+.||++|||++|+++.|
T Consensus       228 ----~~~~~~~~~li~~C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  228 ----DNCPKDIYSLIQQCWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             ----TTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred             ----cchhHHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence                11234677899999999999999999999876

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=5.3e-40  Score=353.39  Aligned_cols=244  Identities=21%  Similarity=0.254  Sum_probs=193.7

Q ss_pred             cccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEEEEeeCC
Q 003296          561 NVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~lv~ey~~  638 (833)
                      ++||+|+||.||+|.. .+++.||||+++. .........+.+..|.+++... +||||+++++++..++..|+||||++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~-~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~   79 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKK-DVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLN   79 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEH-HHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCC
Confidence            3699999999999997 4688999999942 2222233445667788887754 89999999999999999999999999


Q ss_pred             CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCc
Q 003296          639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS  718 (833)
Q Consensus       639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~  718 (833)
                      +|+|.+++..  ...+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++......  ..
T Consensus        80 gg~L~~~~~~--~~~~~~~~~~~~~~qi~~al~~LH---~~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~--~~  152 (316)
T cd05592          80 GGDLMFHIQS--SGRFDEARARFYAAEIICGLQFLH---KKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGE--GK  152 (316)
T ss_pred             CCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCC--Cc
Confidence            9999999976  346899999999999999999999   7899999999999999999999999999998653222  12


Q ss_pred             cccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHH
Q 003296          719 LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVR  798 (833)
Q Consensus       719 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (833)
                      ....+||+.|||||++.+..++.++|||||||++|||++|+.||.+.... +..........        ..+      .
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~~-~~~~~i~~~~~--------~~~------~  217 (316)
T cd05592         153 ASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDED-ELFDSILNDRP--------HFP------R  217 (316)
T ss_pred             cccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCCHH-HHHHHHHcCCC--------CCC------C
Confidence            24568999999999999888999999999999999999999999754432 22111111100        011      1


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCHH-HHHH
Q 003296          799 SQMLTVLKVAVACVSVSPEARPKMK-SVLR  827 (833)
Q Consensus       799 ~~~~~~~~l~~~cl~~dP~~Rps~~-evl~  827 (833)
                      ....++.+++.+||+.||++||++. ++++
T Consensus       218 ~~~~~~~~ll~~~l~~~P~~R~~~~~~l~~  247 (316)
T cd05592         218 WISKEAKDCLSKLFERDPTKRLGVDGDIRQ  247 (316)
T ss_pred             CCCHHHHHHHHHHccCCHHHcCCChHHHHc
Confidence            1234677899999999999999875 5544

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=6.4e-40  Score=346.28  Aligned_cols=247  Identities=18%  Similarity=0.213  Sum_probs=196.6

Q ss_pred             cccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCCCCC
Q 003296          563 ELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGT  641 (833)
Q Consensus       563 ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~g~  641 (833)
                      ||+|+||.||++.. .+|+.||+|++.. .........+.+..|++++++++||||+++++++..+...|+||||+++|+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~-~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~   79 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDK-KRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGD   79 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcH-HHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCC
Confidence            69999999999997 4799999999942 222222234556789999999999999999999999999999999999999


Q ss_pred             hhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCcccc
Q 003296          642 LFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST  721 (833)
Q Consensus       642 L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~  721 (833)
                      |.+++.......+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||++.......   ....
T Consensus        80 L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~---~~~~  153 (277)
T cd05607          80 LKYHIYNVGERGLEMERVIHYSAQITCGILHLH---SMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGK---TITQ  153 (277)
T ss_pred             HHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---HCCEEEccCChHhEEEcCCCCEEEeeceeeeecCCCc---eeec
Confidence            999887654556899999999999999999999   7899999999999999999999999999998764322   1234


Q ss_pred             ccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHH---HHHHHhhcccccccccccccccCCchhHH
Q 003296          722 VAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELA---KWVLRNSAQQDKLDHILDFNVSRTSLAVR  798 (833)
Q Consensus       722 ~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (833)
                      ..||+.|+|||++.+..++.++||||+||++|||++|+.||.......   ......          ........   ..
T Consensus       154 ~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~~~~~~~~~~----------~~~~~~~~---~~  220 (277)
T cd05607         154 RAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKRRT----------LEDEVKFE---HQ  220 (277)
T ss_pred             cCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHh----------hccccccc---cc
Confidence            579999999999988889999999999999999999999997533211   111111          00011000   01


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Q 003296          799 SQMLTVLKVAVACVSVSPEARPKMKSVLRML  829 (833)
Q Consensus       799 ~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L  829 (833)
                      ....++.+++.+||+.||++||+++|+++..
T Consensus       221 ~~~~~~~~li~~~L~~~P~~R~~~~~~~~~~  251 (277)
T cd05607         221 NFTEESKDICRLFLAKKPEDRLGSREKNDDP  251 (277)
T ss_pred             cCCHHHHHHHHHHhccCHhhCCCCccchhhh
Confidence            2345678999999999999999997766443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=2.1e-40  Score=361.21  Aligned_cols=264  Identities=19%  Similarity=0.214  Sum_probs=197.1

Q ss_pred             cCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC-----ce
Q 003296          557 ANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD-----SA  630 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~-----~~  630 (833)
                      |+..+.||+|+||.||+|+. .+|..||||++....  ........+.+|++++++++|||||++++++...+     ..
T Consensus         2 y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   79 (338)
T cd07859           2 YKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVF--EHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDI   79 (338)
T ss_pred             eEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhh--ccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceE
Confidence            56778999999999999996 479999999984211  11223457899999999999999999999986532     47


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      |+|||||. ++|.+++..  ...+++..+..++.|+++||+|||   +.+|+||||||+|||++.++.+||+|||+++..
T Consensus        80 ~lv~e~~~-~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~  153 (338)
T cd07859          80 YVVFELME-SDLHQVIKA--NDDLTPEHHQFFLYQLLRALKYIH---TANVFHRDLKPKNILANADCKLKICDFGLARVA  153 (338)
T ss_pred             EEEEecCC-CCHHHHHHh--cccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCcEEEccCcccccc
Confidence            99999995 699999875  346899999999999999999999   789999999999999999999999999999865


Q ss_pred             CCCCC-CCccccccccccccccccccC--CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccc-----
Q 003296          711 DPSKS-TGSLSTVAGSVGYIPPEYAYT--MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL-----  782 (833)
Q Consensus       711 ~~~~~-~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~-----  782 (833)
                      ..... ........||+.|+|||++.+  ..++.++|||||||++|||+||+.||.+..............+...     
T Consensus       154 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  233 (338)
T cd07859         154 FNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPETIS  233 (338)
T ss_pred             ccccCccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCHHHHH
Confidence            32221 111234679999999999865  5789999999999999999999999975543221110000000000     


Q ss_pred             -------cccc---cccccCC-chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          783 -------DHIL---DFNVSRT-SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       783 -------~~~~---~~~~~~~-~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                             ...+   ....... ..........+.+++.+||+.||++|||++|++++
T Consensus       234 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~h  290 (338)
T cd07859         234 RVRNEKARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALAD  290 (338)
T ss_pred             HhhhhhHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence                   0000   0000000 00001123467899999999999999999999875

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=3.2e-40  Score=334.21  Aligned_cols=256  Identities=18%  Similarity=0.186  Sum_probs=209.5

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      .|+..+.+|+|.-|+||.+.+. ++..+|+|++. +..........+...|-+||+.++||.++.+|+.++.+...|+||
T Consensus        78 ~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmd-K~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~m  156 (459)
T KOG0610|consen   78 HFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMD-KESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVM  156 (459)
T ss_pred             HHHHHHHcCCCCceeEEEEEecCCCceEEEEEec-HHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEE
Confidence            3455678999999999999985 56999999995 333333444567888999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC--
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP--  712 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~--  712 (833)
                      |||+||||..+.+++....+++..++.+|.+|.-||+|||   ..|||.|||||+|||+.++|++-++||.++.....  
T Consensus       157 eyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLH---mlGivYRDLKPENILvredGHIMLsDFDLS~~~~~~P  233 (459)
T KOG0610|consen  157 EYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLH---MLGIVYRDLKPENILVREDGHIMLSDFDLSLRCPVSP  233 (459)
T ss_pred             ecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHH---hhceeeccCCcceeEEecCCcEEeeeccccccCCCCC
Confidence            9999999999999887888999999999999999999999   89999999999999999999999999998643210  


Q ss_pred             -------------------------------CCC---------------------CCccccccccccccccccccCCccc
Q 003296          713 -------------------------------SKS---------------------TGSLSTVAGSVGYIPPEYAYTMRVT  740 (833)
Q Consensus       713 -------------------------------~~~---------------------~~~~~~~~gt~~y~aPE~~~~~~~~  740 (833)
                                                     ...                     ......++||-.|.|||++.+...+
T Consensus       234 t~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GHg  313 (459)
T KOG0610|consen  234 TLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGHG  313 (459)
T ss_pred             eeeccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeecCCCC
Confidence                                           000                     0112347899999999999999999


Q ss_pred             ccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCC
Q 003296          741 MAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARP  820 (833)
Q Consensus       741 ~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rp  820 (833)
                      .++|+|+|||++|||+.|+.||.+.+.......           ++-.....+.  ....+..+.|||.+.|.+||++|.
T Consensus       314 sAVDWWtfGIflYEmLyG~TPFKG~~~~~Tl~N-----------Iv~~~l~Fp~--~~~vs~~akDLIr~LLvKdP~kRl  380 (459)
T KOG0610|consen  314 SAVDWWTFGIFLYEMLYGTTPFKGSNNKETLRN-----------IVGQPLKFPE--EPEVSSAAKDLIRKLLVKDPSKRL  380 (459)
T ss_pred             chhhHHHHHHHHHHHHhCCCCcCCCCchhhHHH-----------HhcCCCcCCC--CCcchhHHHHHHHHHhccChhhhh
Confidence            999999999999999999999987665433322           2222221111  114567889999999999999998


Q ss_pred             C----HHHHHHH
Q 003296          821 K----MKSVLRM  828 (833)
Q Consensus       821 s----~~evl~~  828 (833)
                      .    +.||-+|
T Consensus       381 g~~rGA~eIK~H  392 (459)
T KOG0610|consen  381 GSKRGAAEIKRH  392 (459)
T ss_pred             ccccchHHhhcC
Confidence            8    8887654

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=6.9e-40  Score=355.06  Aligned_cols=264  Identities=15%  Similarity=0.207  Sum_probs=202.1

Q ss_pred             HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      .++|+..+.||+|+||.||+|... +|..+|+|++....   .....+.|.+|++++++++|||||+++++|..++..++
T Consensus         4 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l   80 (333)
T cd06650           4 DDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEI---KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISI   80 (333)
T ss_pred             hhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeeccc---CHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEE
Confidence            467888999999999999999975 78899999884221   11224679999999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||||+++|+|.+++..  ...+++.....++.|++.||+|||+  ..+|+||||||+||++++++.+|++|||++.....
T Consensus        81 v~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~l~~~l~~lH~--~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~  156 (333)
T cd06650          81 CMEHMDGGSLDQVLKK--AGRIPEQILGKVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID  156 (333)
T ss_pred             EEecCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHh--cCCEEecCCChhhEEEcCCCCEEEeeCCcchhhhh
Confidence            9999999999999976  3458899999999999999999994  24799999999999999999999999999876532


Q ss_pred             CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHH-HHHHHhhcccccccccc-----
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELA-KWVLRNSAQQDKLDHIL-----  786 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~-~~~~~~~~~~~~~~~~~-----  786 (833)
                      ..    .....||..|+|||++.+..++.++|||||||++|||++|+.||....... .................     
T Consensus       157 ~~----~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (333)
T cd06650         157 SM----ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPDAKELELMFGCPVEGDPAESETSPRPR  232 (333)
T ss_pred             hc----cccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcchhHHHHHhcCcccCCccccccCcccC
Confidence            21    134579999999999988889999999999999999999999997432211 01100000000000000     


Q ss_pred             ---------cccccC--------------C--chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          787 ---------DFNVSR--------------T--SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       787 ---------~~~~~~--------------~--~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                               .+....              .  .........++.+++.+||+.||++|||+.|++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~Rpt~~ell~h  299 (333)
T cd06650         233 PPGRPLSSYGPDSRPPMAIFELLDYIVNEPPPKLPSGVFGAEFQDFVNKCLIKNPAERADLKQLMVH  299 (333)
T ss_pred             CccchhhhhcccccccccHHHHHHHHhcCCCccCCCCCcCHHHHHHHHHhccCCcccCcCHHHHhhC
Confidence                     000000              0  00000123567899999999999999999999875

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=5.7e-40  Score=353.14  Aligned_cols=244  Identities=21%  Similarity=0.246  Sum_probs=194.5

Q ss_pred             cccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEEEEeeCC
Q 003296          561 NVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~lv~ey~~  638 (833)
                      ++||+|+||.||+|+.. +|..||||+++.. ........+.+..|.+++... +||||+++++++..++..|+||||++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~-~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~   79 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKD-VVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLN   79 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHH-HhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCC
Confidence            46999999999999975 7899999999422 211223345678888888764 89999999999999999999999999


Q ss_pred             CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCc
Q 003296          639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS  718 (833)
Q Consensus       639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~  718 (833)
                      +|+|.+++..  ...+++.++..++.|+++||+|||   +.+|+||||||+||+++.++.+||+|||+++.......  .
T Consensus        80 ~g~L~~~i~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~  152 (316)
T cd05620          80 GGDLMFHIQD--KGRFDLYRATFYAAEIVCGLQFLH---SKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDN--R  152 (316)
T ss_pred             CCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEECCCCCEEeCccCCCeecccCCC--c
Confidence            9999999876  346889999999999999999999   78999999999999999999999999999875422221  2


Q ss_pred             cccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHH
Q 003296          719 LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVR  798 (833)
Q Consensus       719 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (833)
                      ....+||+.|+|||++.+..++.++||||+||++|||++|+.||.+.... +........        .+..+.      
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~~-~~~~~~~~~--------~~~~~~------  217 (316)
T cd05620         153 ASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDED-ELFESIRVD--------TPHYPR------  217 (316)
T ss_pred             eeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHH-HHHHHHHhC--------CCCCCC------
Confidence            24578999999999999889999999999999999999999999754432 211111111        011111      


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCHH-HHHH
Q 003296          799 SQMLTVLKVAVACVSVSPEARPKMK-SVLR  827 (833)
Q Consensus       799 ~~~~~~~~l~~~cl~~dP~~Rps~~-evl~  827 (833)
                      ....++.+++.+||+.||++||++. ++.+
T Consensus       218 ~~~~~~~~li~~~l~~dP~~R~~~~~~~~~  247 (316)
T cd05620         218 WITKESKDILEKLFERDPTRRLGVVGNIRG  247 (316)
T ss_pred             CCCHHHHHHHHHHccCCHHHcCCChHHHHc
Confidence            1234677899999999999999985 5653

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=4.7e-40  Score=355.43  Aligned_cols=250  Identities=22%  Similarity=0.227  Sum_probs=198.9

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCC-CcccceEEEecCCceEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS-NVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~-niv~~~~~~~~~~~~~lv  633 (833)
                      +|+..+.||+|+||.||+|+.. +++.||||++.. .........+.+..|+++++.++|+ +|+++++++...+..|+|
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~-~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv   79 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKK-DVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFV   79 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEH-HHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEE
Confidence            3677889999999999999974 678999999942 2222233456788999999999765 588899999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+|||+++++.+||+|||+++.....
T Consensus        80 ~E~~~~g~L~~~~~~--~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~  154 (324)
T cd05587          80 MEYVNGGDLMYHIQQ--VGKFKEPHAVFYAAEIAIGLFFLH---SKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFG  154 (324)
T ss_pred             EcCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEEcCCCCEEEeecCcceecCCC
Confidence            999999999999975  346899999999999999999999   789999999999999999999999999998754222


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      ..  .....+||+.|+|||++.+..++.++||||+||++|||+||+.||.+...... .........        ..+  
T Consensus       155 ~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~~-~~~i~~~~~--------~~~--  221 (324)
T cd05587         155 GK--TTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDEL-FQSIMEHNV--------SYP--  221 (324)
T ss_pred             CC--ceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHH-HHHHHcCCC--------CCC--
Confidence            21  22456799999999999998999999999999999999999999975443221 111111100        011  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCH-----HHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKM-----KSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~-----~evl~~  828 (833)
                          .....++.+++.+||+.||++||+.     +|+.+|
T Consensus       222 ----~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~h  257 (324)
T cd05587         222 ----KSLSKEAVSICKGLLTKHPAKRLGCGPTGERDIREH  257 (324)
T ss_pred             ----CCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence                1123467899999999999999986     566543

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.6e-39  Score=340.44  Aligned_cols=256  Identities=19%  Similarity=0.291  Sum_probs=207.3

Q ss_pred             HHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      .+.|+..+.||+|+||.||+|...+++.||||.++...     ...++|.+|++++++++||||+++++++...+..++|
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~-----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   79 (261)
T cd05068           5 RTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGT-----MDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIV   79 (261)
T ss_pred             hhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCc-----ccHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeee
Confidence            45678889999999999999998788899999984221     2346799999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++.......++|.++..++.|++.|++|||   ..+|+||||||+||++++++.+|++|||+++.....
T Consensus        80 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~  156 (261)
T cd05068          80 TELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLE---AQNYIHRDLAARNVLVGENNICKVADFGLARVIKED  156 (261)
T ss_pred             eecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCCcceEEEcCCCCEEECCcceEEEccCC
Confidence            99999999999998654456899999999999999999999   789999999999999999999999999999876532


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      ... ......++..|+|||+..+..++.++|||||||++|||+| |+.||.+......+..  .......      ..  
T Consensus       157 ~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~--~~~~~~~------~~--  225 (261)
T cd05068         157 IYE-AREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNAEVLQQ--VDQGYRM------PC--  225 (261)
T ss_pred             ccc-ccCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHH--HHcCCCC------CC--
Confidence            211 1122233468999999998889999999999999999999 9999975432221111  1110000      00  


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                          ....+..+.+++.+|++.||++||++.++.+.|++.
T Consensus       226 ----~~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~~l~~~  261 (261)
T cd05068         226 ----PPGCPKELYDIMLDCWKEDPDDRPTFETLQWKLEDF  261 (261)
T ss_pred             ----CCcCCHHHHHHHHHHhhcCcccCCCHHHHHHHHhcC
Confidence                012345688999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=2e-40  Score=363.54  Aligned_cols=256  Identities=17%  Similarity=0.207  Sum_probs=201.2

Q ss_pred             HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      .++|+..+.||+|+||.||+|... +++.||+|.+. +.........+.+.+|+++++.++|||||++++++..++..|+
T Consensus        42 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~-~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~l  120 (370)
T cd05621          42 AEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLS-KFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLYM  120 (370)
T ss_pred             HHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEE-HHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEE
Confidence            467888999999999999999975 68999999984 2222222334568899999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      |||||++|+|.+++..   ..+++..+..++.|++.||+|||   +.+|+||||||+|||+++++.+||+|||+|+....
T Consensus       121 v~Ey~~gg~L~~~l~~---~~~~~~~~~~~~~qil~aL~~LH---~~~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~  194 (370)
T cd05621         121 VMEYMPGGDLVNLMSN---YDVPEKWAKFYTAEVVLALDAIH---SMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDE  194 (370)
T ss_pred             EEcCCCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHEEECCCCCEEEEecccceeccc
Confidence            9999999999999975   34788889999999999999999   78999999999999999999999999999987643


Q ss_pred             CCCCCccccccccccccccccccCC----cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTM----RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~----~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ... ....+.+||+.|||||++.+.    .++.++||||+||++|||++|+.||.+......+. .........      
T Consensus       195 ~~~-~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~~~~~~~-~i~~~~~~~------  266 (370)
T cd05621         195 TGM-VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSLVGTYS-KIMDHKNSL------  266 (370)
T ss_pred             CCc-eecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCCCHHHHHH-HHHhCCccc------
Confidence            221 122456899999999998653    37899999999999999999999997654322221 111110000      


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCC--CCCHHHHHHH
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEA--RPKMKSVLRM  828 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~--Rps~~evl~~  828 (833)
                      ..+    .....+..+.+++.+|++.+|.+  ||++.|+++|
T Consensus       267 ~~p----~~~~~s~~~~~li~~~L~~~~~r~~R~~~~e~l~h  304 (370)
T cd05621         267 NFP----EDVEISKHAKNLICAFLTDREVRLGRNGVEEIKQH  304 (370)
T ss_pred             CCC----CcccCCHHHHHHHHHHccCchhccCCCCHHHHhcC
Confidence            000    01123446778888999866544  8999999876

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=3.9e-40  Score=363.10  Aligned_cols=257  Identities=15%  Similarity=0.175  Sum_probs=198.6

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ..|+..+.||+|+||.||+|.. .+++.||+|+..          .+.+.+|++++++++|||||+++++|..++..++|
T Consensus        92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~----------~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv  161 (391)
T PHA03212         92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ----------RGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLI  161 (391)
T ss_pred             CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh----------hhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEE
Confidence            4688899999999999999997 478999999762          23578999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+. ++|.+++..  ...+++.+++.++.|++.||+|||   +.+||||||||+|||++.++.+||+|||+|+.....
T Consensus       162 ~e~~~-~~L~~~l~~--~~~l~~~~~~~i~~qi~~aL~ylH---~~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~  235 (391)
T PHA03212        162 LPRYK-TDLYCYLAA--KRNIAICDILAIERSVLRAIQYLH---ENRIIHRDIKAENIFINHPGDVCLGDFGAACFPVDI  235 (391)
T ss_pred             EecCC-CCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChHhEEEcCCCCEEEEeCCcccccccc
Confidence            99995 699998875  346899999999999999999999   789999999999999999999999999999754322


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc------H-HHH--HHHhhcc-cc---
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE------L-AKW--VLRNSAQ-QD---  780 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~------~-~~~--~~~~~~~-~~---  780 (833)
                      . .......+||+.|+|||++.+..++.++|||||||++|||+||+.||.+...      . ...  +...... ..   
T Consensus       236 ~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~  314 (391)
T PHA03212        236 N-ANKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFP  314 (391)
T ss_pred             c-ccccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcC
Confidence            1 1122356899999999999988999999999999999999999988753211      0 000  1000000 00   


Q ss_pred             -----cccccc---------cccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          781 -----KLDHIL---------DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       781 -----~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                           ......         .+............+.++.+++.+||+.||++|||++|++++
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpta~elL~h  376 (391)
T PHA03212        315 IDAQANLDEIYIGLAKKSSRKPGSRPLWTNLYELPIDLEYLICKMLAFDAHHRPSAEALLDF  376 (391)
T ss_pred             cchhHHHHHHHHHHHhccCCCCCCCCCHHHHhhhhhhHHHHHHHHhcCChhhCCCHHHHhcC
Confidence                 000000         000000111112345678899999999999999999999875

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=1.7e-40  Score=359.22  Aligned_cols=247  Identities=15%  Similarity=0.238  Sum_probs=195.2

Q ss_pred             cccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEEEEeeCC
Q 003296          561 NVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~lv~ey~~  638 (833)
                      +.||+|+||.||+|... +++.||+|+++.. ........+.+.+|+.++.++ +|||||++++++..++..|+||||++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~   79 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKE-LVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVN   79 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhh-HhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCC
Confidence            46999999999999974 7899999999422 222223345688899998877 79999999999999999999999999


Q ss_pred             CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCc
Q 003296          639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS  718 (833)
Q Consensus       639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~  718 (833)
                      +|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++.......  .
T Consensus        80 ~~~L~~~~~~--~~~l~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~--~  152 (329)
T cd05618          80 GGDLMFHMQR--QRKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGD--T  152 (329)
T ss_pred             CCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEECCCCCEEEeeCCccccccCCCC--c
Confidence            9999998875  346899999999999999999999   78999999999999999999999999999875422211  2


Q ss_pred             cccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCc-------cHHHHHHHhhccccccccccccccc
Q 003296          719 LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGN-------ELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       719 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      .....||+.|+|||++.+..++.++|||||||++|||++|+.||....       ....+.........       ..++
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~-------~~~p  225 (329)
T cd05618         153 TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQ-------IRIP  225 (329)
T ss_pred             cccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhcCC-------CCCC
Confidence            245689999999999999899999999999999999999999995211       11122211111100       0011


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCC------HHHHHHH
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPK------MKSVLRM  828 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps------~~evl~~  828 (833)
                            .....++.+++.+||+.||++||+      +.|+++|
T Consensus       226 ------~~~~~~~~~ll~~~L~~dP~~R~~~~~~~~~~~i~~h  262 (329)
T cd05618         226 ------RSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGH  262 (329)
T ss_pred             ------CCCCHHHHHHHHHHhcCCHHHcCCCCCCCCHHHHhcC
Confidence                  123456789999999999999998      5677654

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=4.6e-40  Score=353.70  Aligned_cols=244  Identities=21%  Similarity=0.261  Sum_probs=194.4

Q ss_pred             cccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEEEEeeCC
Q 003296          561 NVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~lv~ey~~  638 (833)
                      +.||+|+||.||+|... +++.||||+++.. ........+.+..|..++... +||||+++++++.+++..|+||||++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~   79 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKD-VVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLN   79 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHH-HhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCC
Confidence            36899999999999974 6889999999422 211223345677888888864 89999999999999999999999999


Q ss_pred             CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCc
Q 003296          639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS  718 (833)
Q Consensus       639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~  718 (833)
                      +|+|.+++..  ...+++.++..++.|++.||+|||   +.+|+||||||+||++++++.+||+|||+++.......  .
T Consensus        80 ~g~L~~~l~~--~~~~~~~~~~~~~~qi~~al~~LH---~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~  152 (316)
T cd05619          80 GGDLMFHIQS--CHKFDLPRATFYAAEIICGLQFLH---SKGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDA--K  152 (316)
T ss_pred             CCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---hCCeEeCCCCHHHEEECCCCCEEEccCCcceECCCCCC--c
Confidence            9999999975  346899999999999999999999   78999999999999999999999999999875432221  2


Q ss_pred             cccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHH
Q 003296          719 LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVR  798 (833)
Q Consensus       719 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (833)
                      .....||+.|||||++.+..++.++|||||||++|||++|+.||...... +........        .+..+.      
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~-~~~~~i~~~--------~~~~~~------  217 (316)
T cd05619         153 TCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEE-ELFQSIRMD--------NPCYPR------  217 (316)
T ss_pred             eeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCHH-HHHHHHHhC--------CCCCCc------
Confidence            24567999999999999888999999999999999999999999754322 111111110        001111      


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCHH-HHHH
Q 003296          799 SQMLTVLKVAVACVSVSPEARPKMK-SVLR  827 (833)
Q Consensus       799 ~~~~~~~~l~~~cl~~dP~~Rps~~-evl~  827 (833)
                      ....++.+++.+||+.||++||++. ++.+
T Consensus       218 ~~~~~~~~li~~~l~~~P~~R~~~~~~l~~  247 (316)
T cd05619         218 WLTREAKDILVKLFVREPERRLGVKGDIRQ  247 (316)
T ss_pred             cCCHHHHHHHHHHhccCHhhcCCChHHHHc
Confidence            1234677999999999999999997 6654

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=1.3e-40  Score=361.51  Aligned_cols=254  Identities=18%  Similarity=0.177  Sum_probs=199.5

Q ss_pred             hcCCccccccCcccEEEEEEc----CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCCce
Q 003296          556 VANPLNVELKTRFSTYYKAVM----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASDSA  630 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~~~  630 (833)
                      +|+..+.||+|+||.||+++.    .+|+.||+|++............+.+.+|++++++++ ||||+++++++..++..
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL   80 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence            366788999999999999985    3689999999853222222334567889999999995 99999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      ++||||+++|+|.+++..  ...+++.++..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||+++..
T Consensus        81 ~lv~e~~~~g~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~  155 (332)
T cd05614          81 HLILDYVSGGEMFTHLYQ--RDNFSEDEVRFYSGEIILALEHLH---KLGIVYRDIKLENILLDSEGHVVLTDFGLSKEF  155 (332)
T ss_pred             EEEEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCcEecCCCHHHeEECCCCCEEEeeCcCCccc
Confidence            999999999999999975  346899999999999999999999   789999999999999999999999999999865


Q ss_pred             CCCCCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCcc--HHHHHHHhhccccccccccc
Q 003296          711 DPSKSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNE--LAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~  787 (833)
                      ...... .....+||+.|||||++.+. .++.++|||||||++|||+||+.||.....  ....+......       .+
T Consensus       156 ~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~-------~~  227 (332)
T cd05614         156 LSEEKE-RTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSRRILK-------CD  227 (332)
T ss_pred             cccCCC-ccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCCCCHHHHHHHHhc-------CC
Confidence            332221 22356899999999998765 478999999999999999999999963221  11111111111       01


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARP-----KMKSVLRM  828 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~  828 (833)
                      +.+.      ......+.+++.+||+.||++||     +++|+++|
T Consensus       228 ~~~~------~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h  267 (332)
T cd05614         228 PPFP------SFIGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKEH  267 (332)
T ss_pred             CCCC------CCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHHcC
Confidence            1111      11234677899999999999999     77788764

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=1.2e-39  Score=342.43  Aligned_cols=257  Identities=18%  Similarity=0.253  Sum_probs=205.5

Q ss_pred             HhcCCccccccCcccEEEEEEcC----CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP----SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      ++|+..+.||+|+||.||+|...    +...||||.++...   .....++|.+|+.++++++||||+++++++...+..
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   80 (266)
T cd05033           4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGS---SDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPV   80 (266)
T ss_pred             HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCC---ChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCce
Confidence            56888999999999999999874    24679999984221   122346799999999999999999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      ++||||+++|+|.+++... ...++|.++..++.|++.|++|||   +.+|+||||||+||++++++.+|++|||+++..
T Consensus        81 ~iv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~Lh---~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~  156 (266)
T cd05033          81 MIITEYMENGSLDKFLREN-DGKFTVGQLVGMLRGIASGMKYLS---EMNYVHRDLAARNILVNSNLVCKVSDFGLSRRL  156 (266)
T ss_pred             EEEEEcCCCCCHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCCEEECccchhhcc
Confidence            9999999999999999764 236899999999999999999999   789999999999999999999999999999877


Q ss_pred             CCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          711 DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      .............+++.|+|||+..+..++.++|||||||++|||++ |..||....... ..... .......      
T Consensus       157 ~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~~~-~~~~~-~~~~~~~------  228 (266)
T cd05033         157 EDSEATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMSNQD-VIKAV-EDGYRLP------  228 (266)
T ss_pred             cccccceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCCHHH-HHHHH-HcCCCCC------
Confidence            42222111122345678999999988889999999999999999998 999996433221 11111 1100000      


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                        .    ....+..+.+++.+||+.+|++||+++||+++|+++
T Consensus       229 --~----~~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~  265 (266)
T cd05033         229 --P----PMDCPSALYQLMLDCWQKDRNERPTFSQIVSTLDKM  265 (266)
T ss_pred             --C----CCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence              0    012345678999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=9.1e-40  Score=343.55  Aligned_cols=261  Identities=16%  Similarity=0.264  Sum_probs=209.1

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||.||+|+. .+|+.||||++... ..........|.+|++++++++||||+++++++...+..++|
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~-~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v   80 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIF-EMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIV   80 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeecc-ccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEE
Confidence            3577889999999999999997 47899999987421 111223346789999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCC--CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          634 YEYAPKGTLFDVLHGCL--ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      |||+++|+|.+++....  ...+++..+..++.|+++||+|||   +.+++||||||+||+++.++.++++|||++....
T Consensus        81 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~  157 (267)
T cd08228          81 LELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFS  157 (267)
T ss_pred             EEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCCHHHEEEcCCCCEEECccccceecc
Confidence            99999999999886321  245788999999999999999999   7899999999999999999999999999988764


Q ss_pred             CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc-HHHHHHHhhcccccccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE-LAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                      ....  ......|++.|+|||++.+..++.++|||||||++|||++|+.||..... ...+..... ...      .+..
T Consensus       158 ~~~~--~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~~~~~~~~~-~~~------~~~~  228 (267)
T cd08228         158 SKTT--AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIE-QCD------YPPL  228 (267)
T ss_pred             chhH--HHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccccccHHHHHHHHh-cCC------CCCC
Confidence            3221  12345789999999999888899999999999999999999999964332 222222111 100      0000


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR  833 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r  833 (833)
                           ........+.+++.+||+.+|++||++.||++.++++|
T Consensus       229 -----~~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~~~  266 (267)
T cd08228         229 -----PTEHYSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQMH  266 (267)
T ss_pred             -----ChhhcCHHHHHHHHHHCCCCcccCcCHHHHHHHHHHhc
Confidence                 11233457889999999999999999999999999876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=6.8e-40  Score=353.06  Aligned_cols=245  Identities=22%  Similarity=0.247  Sum_probs=197.8

Q ss_pred             cccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEEEEeeCC
Q 003296          561 NVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~lv~ey~~  638 (833)
                      +.||+|+||.||+|... +++.||||+++ +...........+.+|+++++.+ +||||+++++++...+..|+||||++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~-~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~   79 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLK-KDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVN   79 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEE-HHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCC
Confidence            46999999999999975 68899999994 22222233456788999999888 69999999999999999999999999


Q ss_pred             CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCc
Q 003296          639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS  718 (833)
Q Consensus       639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~  718 (833)
                      +|+|.+++..  ...+++.++..++.|++.||+|||   +.+|+||||||+||++++++.+||+|||+++.......  .
T Consensus        80 ~~~L~~~~~~--~~~l~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~--~  152 (318)
T cd05570          80 GGDLMFHIQR--SGRFDEPRARFYAAEIVLGLQFLH---ERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGV--T  152 (318)
T ss_pred             CCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---hCCeEccCCCHHHeEECCCCcEEecccCCCeecCcCCC--c
Confidence            9999999876  346899999999999999999999   78999999999999999999999999999875322221  2


Q ss_pred             cccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHH
Q 003296          719 LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVR  798 (833)
Q Consensus       719 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (833)
                      ....+||+.|+|||++.+..++.++|||||||++|||++|+.||...... ...........        ..+      .
T Consensus       153 ~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~~-~~~~~i~~~~~--------~~~------~  217 (318)
T cd05570         153 TSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDED-ELFQSILEDEV--------RYP------R  217 (318)
T ss_pred             ccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCHH-HHHHHHHcCCC--------CCC------C
Confidence            23467999999999999989999999999999999999999999754322 21111111100        000      1


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCH-----HHHHHH
Q 003296          799 SQMLTVLKVAVACVSVSPEARPKM-----KSVLRM  828 (833)
Q Consensus       799 ~~~~~~~~l~~~cl~~dP~~Rps~-----~evl~~  828 (833)
                      ....++.+++.+||+.||++||++     .+++++
T Consensus       218 ~~~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~~  252 (318)
T cd05570         218 WLSKEAKSILKSFLTKNPEKRLGCLPTGEQDIKGH  252 (318)
T ss_pred             cCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHhcC
Confidence            223467899999999999999999     888764

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=6.2e-40  Score=354.33  Aligned_cols=249  Identities=22%  Similarity=0.225  Sum_probs=198.7

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +|+..+.||+|+||.||+|+.. +++.||||++.. .........+.+..|.+++..+ +||+|+++++++...+..|+|
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~-~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv   79 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKK-DVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFV   79 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEH-HHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEE
Confidence            4677889999999999999975 688999999952 2222233345678899998887 589999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++..  ...+++.++..++.|++.||+|||   +.+|+||||||+|||+++++.+||+|||+++.....
T Consensus        80 ~E~~~~g~L~~~~~~--~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~  154 (323)
T cd05616          80 MEYVNGGDLMYQIQQ--VGRFKEPHAVFYAAEIAIGLFFLH---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWD  154 (323)
T ss_pred             EcCCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCEEecCCCHHHeEECCCCcEEEccCCCceecCCC
Confidence            999999999999875  346899999999999999999999   789999999999999999999999999999864322


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      ..  .....+||+.|||||++.+..++.++|||||||++|||+||+.||.+..... ..........        ..+  
T Consensus       155 ~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~~~-~~~~i~~~~~--------~~p--  221 (323)
T cd05616         155 GV--TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDE-LFQSIMEHNV--------AYP--  221 (323)
T ss_pred             CC--ccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCHHH-HHHHHHhCCC--------CCC--
Confidence            21  2245689999999999999999999999999999999999999997544322 1111111100        000  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCH-----HHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKM-----KSVLR  827 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~-----~evl~  827 (833)
                          .....++.+++.+|++.||++|++.     .++.+
T Consensus       222 ----~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~  256 (323)
T cd05616         222 ----KSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE  256 (323)
T ss_pred             ----CcCCHHHHHHHHHHcccCHHhcCCCCCCCHHHHhc
Confidence                1234567899999999999999984     56654

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=1.3e-39  Score=346.26  Aligned_cols=257  Identities=21%  Similarity=0.265  Sum_probs=204.3

Q ss_pred             HhcCCccccccCcccEEEEEEc------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC
Q 003296          555 AVANPLNVELKTRFSTYYKAVM------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~  628 (833)
                      .+|...+.+|+|+||.||++..      .++..+|+|.+....    ....+.|.+|++++++++||||++++++|...+
T Consensus         5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   80 (288)
T cd05093           5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS----DNARKDFHREAELLTNLQHEHIVKFYGVCVEGD   80 (288)
T ss_pred             HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcC----HHHHHHHHHHHHHHHhCCCCCcceEEEEEecCC
Confidence            4677889999999999999984      245679999984221    123467999999999999999999999999999


Q ss_pred             ceEEEEeeCCCCChhhhhhcCC-----------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCL-----------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK  697 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~-----------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~  697 (833)
                      ..++||||+++|+|.+++....           ...++|.+++.++.|++.||+|||   ..+++||||||+||++++++
T Consensus        81 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH---~~~i~H~dlkp~Nili~~~~  157 (288)
T cd05093          81 PLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENL  157 (288)
T ss_pred             ccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccCcceEEEccCC
Confidence            9999999999999999997432           125899999999999999999999   78999999999999999999


Q ss_pred             CceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhh
Q 003296          698 EPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNS  776 (833)
Q Consensus       698 ~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~  776 (833)
                      .+|++|||+++...............+++.|+|||++.+..++.++|||||||++|||+| |+.||....... ......
T Consensus       158 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~~~-~~~~i~  236 (288)
T cd05093         158 LVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNE-VIECIT  236 (288)
T ss_pred             cEEeccCCccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH-HHHHHH
Confidence            999999999986543221111223456789999999988889999999999999999999 899987543221 111111


Q ss_pred             cccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          777 AQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                       ... ...     ..      ...+.++.+++.+||+.||.+|||++||.+.|+++
T Consensus       237 -~~~-~~~-----~~------~~~~~~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~  279 (288)
T cd05093         237 -QGR-VLQ-----RP------RTCPKEVYDLMLGCWQREPHMRLNIKEIHSLLQNL  279 (288)
T ss_pred             -cCC-cCC-----CC------CCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHH
Confidence             111 000     00      11234688999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-40  Score=367.56  Aligned_cols=255  Identities=15%  Similarity=0.181  Sum_probs=198.8

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|...+.||+|+||.||+|.. .+|+.||||++. +.........+.+.+|++++++++|||||+++++|.+++..|+||
T Consensus         2 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~-~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~   80 (377)
T cd05629           2 DFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLL-KSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIM   80 (377)
T ss_pred             CceEeEEEeecCCEEEEEEEECCCCCEEEEEEEE-HHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEE
Confidence            577789999999999999986 488999999984 222222233567899999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+|||++.++.+|++|||+++......
T Consensus        81 E~~~gg~L~~~l~~--~~~~~~~~~~~~~~ql~~aL~~LH---~~givHrDlkp~NIll~~~~~~kl~DfGla~~~~~~~  155 (377)
T cd05629          81 EFLPGGDLMTMLIK--YDTFSEDVTRFYMAECVLAIEAVH---KLGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQH  155 (377)
T ss_pred             eCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEECCCCCEEEeeccccccccccc
Confidence            99999999999975  346889999999999999999999   7899999999999999999999999999986331100


Q ss_pred             C------------CC---------------------------------ccccccccccccccccccCCcccccCcchhhH
Q 003296          715 S------------TG---------------------------------SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFG  749 (833)
Q Consensus       715 ~------------~~---------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~G  749 (833)
                      .            ..                                 .....+||+.|||||++.+..++.++||||||
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG  235 (377)
T cd05629         156 DSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLG  235 (377)
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEecc
Confidence            0            00                                 00125799999999999988899999999999


Q ss_pred             HHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCC---CCHHHHH
Q 003296          750 VILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEAR---PKMKSVL  826 (833)
Q Consensus       750 vvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~R---ps~~evl  826 (833)
                      |++|||+||+.||........+. ........   .   ..+.    ......++.+++.+|+. +|.+|   |++.|++
T Consensus       236 vil~elltG~~Pf~~~~~~~~~~-~i~~~~~~---~---~~p~----~~~~s~~~~dli~~lL~-~~~~r~~r~~~~~~l  303 (377)
T cd05629         236 AIMFECLIGWPPFCSENSHETYR-KIINWRET---L---YFPD----DIHLSVEAEDLIRRLIT-NAENRLGRGGAHEIK  303 (377)
T ss_pred             hhhhhhhcCCCCCCCCCHHHHHH-HHHccCCc---c---CCCC----CCCCCHHHHHHHHHHhc-CHhhcCCCCCHHHHh
Confidence            99999999999997554322211 11110000   0   0000    01123467889999997 67665   6999998


Q ss_pred             HH
Q 003296          827 RM  828 (833)
Q Consensus       827 ~~  828 (833)
                      +|
T Consensus       304 ~h  305 (377)
T cd05629         304 SH  305 (377)
T ss_pred             cC
Confidence            76

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=6.8e-40  Score=346.41  Aligned_cols=259  Identities=17%  Similarity=0.207  Sum_probs=203.6

Q ss_pred             HHHhcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA  626 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~  626 (833)
                      .+++|+..+.||+|+||.||+|...      ++..||||++.....   .....+|.+|+.++++++|||||++++++..
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~---~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~   80 (277)
T cd05062           4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAAS---MRERIEFLNEASVMKEFNCHHVVRLLGVVSQ   80 (277)
T ss_pred             cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCC---HHHHHHHHHHHHHHHhCCCCCeeeEEEEEcC
Confidence            4567889999999999999999752      357899999842211   1234579999999999999999999999999


Q ss_pred             CCceEEEEeeCCCCChhhhhhcCC--------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC
Q 003296          627 SDSAYLFYEYAPKGTLFDVLHGCL--------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE  698 (833)
Q Consensus       627 ~~~~~lv~ey~~~g~L~~~l~~~~--------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~  698 (833)
                      ....++||||+++|+|.++++...        ...++|.++..++.|+++||+|||   +.+++||||||+||++++++.
T Consensus        81 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~~vH~dlkp~Nil~~~~~~  157 (277)
T cd05062          81 GQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFT  157 (277)
T ss_pred             CCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCcchheEEEcCCCC
Confidence            999999999999999999987532        124688999999999999999999   789999999999999999999


Q ss_pred             ceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhc
Q 003296          699 PQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSA  777 (833)
Q Consensus       699 ~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~  777 (833)
                      +|++|||+++...............+++.|||||++.+..++.++|||||||++|||++ |..||.+... .........
T Consensus       158 ~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~-~~~~~~~~~  236 (277)
T cd05062         158 VKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSN-EQVLRFVME  236 (277)
T ss_pred             EEECCCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCH-HHHHHHHHc
Confidence            99999999876543221111123456788999999988889999999999999999999 6888865432 222111111


Q ss_pred             ccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          778 QQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                      . .. ..     ..      ...+..+.+++.+|++.||++|||+.|++++|++
T Consensus       237 ~-~~-~~-----~~------~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~  277 (277)
T cd05062         237 G-GL-LD-----KP------DNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKE  277 (277)
T ss_pred             C-Cc-CC-----CC------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHhhC
Confidence            1 10 00     00      1223467899999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.7e-40  Score=362.01  Aligned_cols=255  Identities=17%  Similarity=0.240  Sum_probs=205.6

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|...+.||+|+||.||+|... +|+.||||+++ ..........+.+.+|+++++.++||||+++++++.+++..|+||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~-~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (350)
T cd05573           2 DFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLR-KSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVM   80 (350)
T ss_pred             CceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEE-HHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEE
Confidence            5777899999999999999975 79999999994 222222344567999999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.+++...  ..+++..+..++.|++.||+|||   ..+|+||||||+||+++.++.+|++|||+++......
T Consensus        81 e~~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH---~~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~  155 (350)
T cd05573          81 EYMPGGDLMNLLIRK--DVFPEETARFYIAELVLALDSVH---KLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAK  155 (350)
T ss_pred             cCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEeecCCCCccCcccC
Confidence            999999999999863  56899999999999999999999   7899999999999999999999999999998654332


Q ss_pred             ---------------------------CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc
Q 003296          715 ---------------------------STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE  767 (833)
Q Consensus       715 ---------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~  767 (833)
                                                 .........||+.|+|||++.+..++.++|||||||++|||++|+.||.....
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~  235 (350)
T cd05573         156 DREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTL  235 (350)
T ss_pred             cccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCCH
Confidence                                       00112346799999999999998999999999999999999999999986553


Q ss_pred             HHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCC-HHHHHHH
Q 003296          768 LAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPK-MKSVLRM  828 (833)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps-~~evl~~  828 (833)
                      ...+.... ......      ..+..    ...+.++.+++.+|+. ||++||+ ++|++++
T Consensus       236 ~~~~~~i~-~~~~~~------~~p~~----~~~~~~~~~li~~ll~-dp~~R~~s~~~ll~h  285 (350)
T cd05573         236 QETYNKII-NWKESL------RFPPD----PPVSPEAIDLICRLLC-DPEDRLGSFEEIKSH  285 (350)
T ss_pred             HHHHHHHh-ccCCcc------cCCCC----CCCCHHHHHHHHHHcc-ChhhcCCCHHHHhcC
Confidence            32222111 100000      00000    0134567899999997 9999999 9999876

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=1.1e-39  Score=347.48  Aligned_cols=257  Identities=22%  Similarity=0.281  Sum_probs=204.7

Q ss_pred             HhcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~  628 (833)
                      .+|...+.||+|+||.||+|+..      ++..+|+|.+....    ....+.|.+|++++++++||||+++++++...+
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   80 (291)
T cd05094           5 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPT----LAARKDFQREAELLTNLQHEHIVKFYGVCGDGD   80 (291)
T ss_pred             HHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCcc----HHHHHHHHHHHHHHhcCCCCCcceEEEEEccCC
Confidence            35777889999999999999742      45679999984221    122467999999999999999999999999999


Q ss_pred             ceEEEEeeCCCCChhhhhhcCC--------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCL--------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK  694 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~  694 (833)
                      ..++||||+++|+|.+++....              ...++|..++.++.|++.|++|||   +.+|+||||||+||+++
T Consensus        81 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~i~H~dlkp~Nil~~  157 (291)
T cd05094          81 PLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLA---SQHFVHRDLATRNCLVG  157 (291)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccCcceEEEc
Confidence            9999999999999999997532              234899999999999999999999   88999999999999999


Q ss_pred             CCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHH
Q 003296          695 SLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVL  773 (833)
Q Consensus       695 ~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~  773 (833)
                      .++.+|++|||+++...............|+..|+|||++.+..++.++|||||||++|||+| |+.||....... ...
T Consensus       158 ~~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~-~~~  236 (291)
T cd05094         158 ANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTE-VIE  236 (291)
T ss_pred             cCCcEEECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH-HHH
Confidence            999999999999976543221111233567889999999998889999999999999999999 999986543322 111


Q ss_pred             HhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          774 RNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      . ... ......           ....+..+.+++.+||+.||++|||++||+++|+++
T Consensus       237 ~-~~~-~~~~~~-----------~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~  282 (291)
T cd05094         237 C-ITQ-GRVLER-----------PRVCPKEVYDIMLGCWQREPQQRLNIKEIYKILHAL  282 (291)
T ss_pred             H-HhC-CCCCCC-----------CccCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHH
Confidence            1 111 110000           011245678999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=1.9e-40  Score=367.02  Aligned_cols=255  Identities=16%  Similarity=0.188  Sum_probs=197.4

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      .|+..+.||+|+||.||+|+. .+++.||||++.. .........+.+.+|++++++++|||||+++++|.+++..|+||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~-~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~   80 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRK-KDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVM   80 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeH-HHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEE
Confidence            467788999999999999997 4789999999942 22222233567899999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      |||++|+|.+++.+  ...+++.....++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||+|+......
T Consensus        81 E~~~gg~L~~~l~~--~~~~~e~~~~~~~~qi~~al~~lH---~~~ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~~  155 (382)
T cd05625          81 DYIPGGDMMSLLIR--MGIFPEDLARFYIAELTCAVESVH---KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTH  155 (382)
T ss_pred             eCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEEeECCCCccccccc
Confidence            99999999999976  345888889999999999999999   7899999999999999999999999999975321000


Q ss_pred             ---------------------------------------------CCCccccccccccccccccccCCcccccCcchhhH
Q 003296          715 ---------------------------------------------STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFG  749 (833)
Q Consensus       715 ---------------------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~G  749 (833)
                                                                   ........+||+.|||||++.+..++.++||||+|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG  235 (382)
T cd05625         156 DSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVG  235 (382)
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEech
Confidence                                                         00001235799999999999988999999999999


Q ss_pred             HHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCC---HHHHH
Q 003296          750 VILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPK---MKSVL  826 (833)
Q Consensus       750 vvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps---~~evl  826 (833)
                      |++|||++|+.||............ .......      ..+.    ......++.+++.+|+ .+|++|++   +.|++
T Consensus       236 vil~elltG~~Pf~~~~~~~~~~~i-~~~~~~~------~~p~----~~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~  303 (382)
T cd05625         236 VILYEMLVGQPPFLAQTPLETQMKV-INWQTSL------HIPP----QAKLSPEASDLIIKLC-RGPEDRLGKNGADEIK  303 (382)
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHH-HccCCCc------CCCC----cccCCHHHHHHHHHHc-cCHhHcCCCCCHHHHh
Confidence            9999999999999865433221111 1100000      0000    0122345677777765 49999987   88887


Q ss_pred             HH
Q 003296          827 RM  828 (833)
Q Consensus       827 ~~  828 (833)
                      +|
T Consensus       304 ~h  305 (382)
T cd05625         304 AH  305 (382)
T ss_pred             cC
Confidence            64

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=1.3e-39  Score=345.02  Aligned_cols=257  Identities=21%  Similarity=0.273  Sum_probs=204.5

Q ss_pred             HhcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~  628 (833)
                      +.|...+.||+|+||.||+|...      ++..||||+++....   ....+.|.+|++++++++||||+++++++...+
T Consensus         5 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   81 (280)
T cd05049           5 DTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETAS---NDARKDFEREAELLTNFQHENIVKFYGVCTEGD   81 (280)
T ss_pred             HHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCC---HHHHHHHHHHHHHHHhcCCCCchheeeEEecCC
Confidence            45777889999999999999863      357899999842211   123468999999999999999999999999999


Q ss_pred             ceEEEEeeCCCCChhhhhhcCC------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCL------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL  696 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~  696 (833)
                      ..++||||+++|+|.++++...            ...++|.++..++.|++.|++|||   ..+++||||||+||+++.+
T Consensus        82 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH---~~~i~h~dlkp~nili~~~  158 (280)
T cd05049          82 PPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLA---SQHFVHRDLATRNCLVGYD  158 (280)
T ss_pred             CeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeeccccccceEEEcCC
Confidence            9999999999999999997532            235789999999999999999999   7899999999999999999


Q ss_pred             CCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHh
Q 003296          697 KEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRN  775 (833)
Q Consensus       697 ~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~  775 (833)
                      +.+|++|||+++...............+++.|+|||++.+..++.++|||||||++|||++ |+.||.+.... ......
T Consensus       159 ~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~~-~~~~~~  237 (280)
T cd05049         159 LVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSNE-EVIECI  237 (280)
T ss_pred             CeEEECCcccceecccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCHH-HHHHHH
Confidence            9999999999986533221111123456789999999998899999999999999999999 99998754322 111111


Q ss_pred             hcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          776 SAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                      . . .....        .   ....+..+.+++.+||+.||++||++.||++.|++
T Consensus       238 ~-~-~~~~~--------~---~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~l~~  280 (280)
T cd05049         238 T-Q-GRLLQ--------R---PRTCPSEVYDIMLGCWKRDPQQRINIKDIHERLQK  280 (280)
T ss_pred             H-c-CCcCC--------C---CCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhhC
Confidence            1 1 10000        0   01234567899999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-39  Score=335.18  Aligned_cols=261  Identities=22%  Similarity=0.324  Sum_probs=198.2

Q ss_pred             ccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhc--CCCCCcccceEEEecCC----ceEEE
Q 003296          560 LNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGK--LSNSNVMTPLAYVLASD----SAYLF  633 (833)
Q Consensus       560 ~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~--l~H~niv~~~~~~~~~~----~~~lv  633 (833)
                      .+++|+|+||.||||.+ +++.||||++..       ...+.|..|-+|.+-  ++|+||++++++-....    +++||
T Consensus       215 ~eli~~Grfg~V~KaqL-~~~~VAVKifp~-------~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLV  286 (534)
T KOG3653|consen  215 LELIGRGRFGCVWKAQL-DNRLVAVKIFPE-------QEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLV  286 (534)
T ss_pred             HHHhhcCccceeehhhc-cCceeEEEecCH-------HHHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEE
Confidence            46899999999999999 569999999942       234678888888765  58999999999877655    89999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcC------CCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGF------TSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~------~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                      +||.++|+|.++|+.   ..++|....+|+..+|+||+|||+.      .+++|+|||||+.|||+.+|+++.|+|||+|
T Consensus       287 t~fh~kGsL~dyL~~---ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLA  363 (534)
T KOG3653|consen  287 TEFHPKGSLCDYLKA---NTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLA  363 (534)
T ss_pred             eeeccCCcHHHHHHh---ccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeecccee
Confidence            999999999999984   5799999999999999999999964      3568999999999999999999999999999


Q ss_pred             eeeCCCCCCCccccccccccccccccccCCc-cc-----ccCcchhhHHHHHHHHhCCCcccC-C-ccHHHHHHHhhccc
Q 003296          708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYTMR-VT-----MAGNVYSFGVILLELLTGKTAVNQ-G-NELAKWVLRNSAQQ  779 (833)
Q Consensus       708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~-----~~~Dv~S~Gvvl~elltg~~p~~~-~-~~~~~~~~~~~~~~  779 (833)
                      ..+.+..........+||.+|||||++.+.. +.     .+.||||+|.|+|||+++...++. . .+..--........
T Consensus       364 l~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~h  443 (534)
T KOG3653|consen  364 LRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNH  443 (534)
T ss_pred             EEecCCCCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCC
Confidence            9998777666666789999999999987532 21     469999999999999997654421 0 00000000000010


Q ss_pred             cccccc----c----cccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          780 DKLDHI----L----DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       780 ~~~~~~----~----~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ..++++    +    .|.++.. ......+..+.+.+..||+.||+.|.|+.=|.+++.++
T Consensus       444 Pt~e~mq~~VV~kK~RP~~p~~-W~~h~~~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~l  503 (534)
T KOG3653|consen  444 PTLEEMQELVVRKKQRPKIPDA-WRKHAGMAVLCETIEECWDHDAEARLTAGCVEERMAEL  503 (534)
T ss_pred             CCHHHHHHHHHhhccCCCChhh-hhcCccHHHHHHHHHHHcCCchhhhhhhHHHHHHHHHH
Confidence            111110    0    1111110 01123466788999999999999999999888877654

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=1.3e-39  Score=345.45  Aligned_cols=257  Identities=20%  Similarity=0.309  Sum_probs=203.1

Q ss_pred             HhcCCccccccCcccEEEEEEc-----CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS  629 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~  629 (833)
                      ++|+..+.||+|+||.||+|+.     .++..||+|.+.....   ......|.+|++++++++|||||++++++..++.
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~   81 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINN---PQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQP   81 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCC---HHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCc
Confidence            4577789999999999999984     3568999999942211   1224678999999999999999999999999999


Q ss_pred             eEEEEeeCCCCChhhhhhcCC---------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC
Q 003296          630 AYLFYEYAPKGTLFDVLHGCL---------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK  694 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~---------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~  694 (833)
                      .|+||||+++|+|.+++....               ...+++.+...++.|++.||+|||   +.+|+||||||+||+++
T Consensus        82 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~i~H~dlkp~nili~  158 (283)
T cd05090          82 VCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLS---SHFFVHKDLAARNILIG  158 (283)
T ss_pred             eEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hcCeehhccccceEEEc
Confidence            999999999999999985321               124789999999999999999999   78999999999999999


Q ss_pred             CCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHH
Q 003296          695 SLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVL  773 (833)
Q Consensus       695 ~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~  773 (833)
                      +++.+|++|||+++...............++..|+|||++.+..++.++|||||||++|||++ |..||.+... .....
T Consensus       159 ~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~~-~~~~~  237 (283)
T cd05090         159 EQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSN-QEVIE  237 (283)
T ss_pred             CCCcEEeccccccccccCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCH-HHHHH
Confidence            999999999999987643322222234556788999999988889999999999999999999 9999965432 11111


Q ss_pred             HhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          774 RNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                      .. ...... .     .      ....+.++.+++.+||+.||++||++.+|.++|..
T Consensus       238 ~~-~~~~~~-~-----~------~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05090         238 MV-RKRQLL-P-----C------SEDCPPRMYSLMTECWQEGPSRRPRFKDIHTRLRS  282 (283)
T ss_pred             HH-HcCCcC-C-----C------CCCCCHHHHHHHHHHcccCcccCcCHHHHHHHhhc
Confidence            11 110100 0     0      01223467889999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=7.5e-40  Score=358.16  Aligned_cols=249  Identities=20%  Similarity=0.290  Sum_probs=193.2

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      .+|+..+.||+|+||.||+|+.. +|+.||||++....   .....+.|.+|++++++++|||||++++++...+..++|
T Consensus        74 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  150 (353)
T PLN00034         74 SELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNH---EDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVL  150 (353)
T ss_pred             HHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCC---cHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEE
Confidence            34556789999999999999964 78999999984221   112346789999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||||++|+|.+..      ..++..+..++.|++.||+|||   +.+|+||||||+|||+++++.+||+|||+++.....
T Consensus       151 ~e~~~~~~L~~~~------~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~  221 (353)
T PLN00034        151 LEFMDGGSLEGTH------IADEQFLADVARQILSGIAYLH---RRHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQT  221 (353)
T ss_pred             EecCCCCcccccc------cCCHHHHHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEcCCCCEEEcccccceecccc
Confidence            9999999986532      3567778889999999999999   789999999999999999999999999999876432


Q ss_pred             CCCCccccccccccccccccccC-----CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYT-----MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ..  ......||..|+|||++..     ...+.++|||||||++|||++|+.||..... ..|...........    ..
T Consensus       222 ~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~-~~~~~~~~~~~~~~----~~  294 (353)
T PLN00034        222 MD--PCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQ-GDWASLMCAICMSQ----PP  294 (353)
T ss_pred             cc--cccccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCC-ccHHHHHHHHhccC----CC
Confidence            21  1234679999999998743     2245689999999999999999999973221 11211110000000    00


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .      .......++.+++.+||+.||++|||+.|+++|
T Consensus       295 ~------~~~~~~~~l~~li~~~l~~~P~~Rpt~~ell~h  328 (353)
T PLN00034        295 E------APATASREFRHFISCCLQREPAKRWSAMQLLQH  328 (353)
T ss_pred             C------CCCccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            0      011234578899999999999999999999986

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=2.4e-40  Score=357.62  Aligned_cols=240  Identities=21%  Similarity=0.233  Sum_probs=190.9

Q ss_pred             cccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHH-HHhcCCCCCcccceEEEecCCceEEEEeeCC
Q 003296          561 NVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELE-VLGKLSNSNVMTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~-~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~  638 (833)
                      +.||+|+||+||+|+.. +|+.||||++... ........+++.+|.. +++.++|||||++++++...+..|+||||++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~   79 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKK-AILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVN   79 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHH-HHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCC
Confidence            36899999999999974 7999999999422 2222223345666655 5688999999999999999999999999999


Q ss_pred             CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCc
Q 003296          639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS  718 (833)
Q Consensus       639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~  718 (833)
                      +|+|.+++..  ...+++..+..++.|+++||+|||   ..+|+||||||+|||++.++.+||+|||+++......  ..
T Consensus        80 ~g~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~--~~  152 (323)
T cd05575          80 GGELFFHLQR--ERSFPEPRARFYAAEIASALGYLH---SLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHS--KT  152 (323)
T ss_pred             CCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCCHHHeEECCCCcEEEeccCCCcccccCC--Cc
Confidence            9999999975  446899999999999999999999   7899999999999999999999999999987542222  12


Q ss_pred             cccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHH
Q 003296          719 LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVR  798 (833)
Q Consensus       719 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (833)
                      ....+||+.|||||++.+..++.++|||||||++|||++|+.||..... .+..........        ...      .
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~-~~~~~~i~~~~~--------~~~------~  217 (323)
T cd05575         153 TSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDT-AEMYDNILNKPL--------RLK------P  217 (323)
T ss_pred             cccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCCH-HHHHHHHHcCCC--------CCC------C
Confidence            2456799999999999988999999999999999999999999975432 222211111100        000      0


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCHH
Q 003296          799 SQMLTVLKVAVACVSVSPEARPKMK  823 (833)
Q Consensus       799 ~~~~~~~~l~~~cl~~dP~~Rps~~  823 (833)
                      ..+.++.+++.+|++.||++||+++
T Consensus       218 ~~~~~~~~li~~~l~~~p~~R~~~~  242 (323)
T cd05575         218 NISVSARHLLEGLLQKDRTKRLGAK  242 (323)
T ss_pred             CCCHHHHHHHHHHhhcCHHhCCCCC
Confidence            1244678999999999999999985

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=1.3e-40  Score=361.05  Aligned_cols=255  Identities=16%  Similarity=0.197  Sum_probs=203.1

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|+..+.||+|+||.||+|... +|+.||||+++.. ........+.+.+|+++++.++||||+++++++.+.+..|+||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (330)
T cd05601           2 DFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKS-VLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVM   80 (330)
T ss_pred             CceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHH-HhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEE
Confidence            5778899999999999999974 7899999999522 2222234567899999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.+++... ...+++..+..++.|+++||+|||   +.+|+||||||+||+++.++.+||+|||+++......
T Consensus        81 e~~~~~~L~~~l~~~-~~~l~~~~~~~~~~qi~~aL~~lH---~~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~  156 (330)
T cd05601          81 EYQPGGDLLSLLNRY-EDQFDEDMAQFYLAELVLAIHSVH---QMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANK  156 (330)
T ss_pred             CCCCCCCHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEcccCchHheEECCCCCEEeccCCCCeECCCCC
Confidence            999999999999864 246899999999999999999999   7899999999999999999999999999998764332


Q ss_pred             CCCcccccccccccccccccc------CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          715 STGSLSTVAGSVGYIPPEYAY------TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      .. ......||+.|+|||++.      ...++.++|||||||++|||++|+.||........+. ........    .. 
T Consensus       157 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~-~i~~~~~~----~~-  229 (330)
T cd05601         157 MV-NSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAKTYN-NIMNFQRF----LK-  229 (330)
T ss_pred             ce-eeecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCCHHHHHH-HHHcCCCc----cC-
Confidence            21 223457999999999986      4567899999999999999999999997654432221 11111000    00 


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                       .+.    ....+.++.+++.+|++ +|++|||++++++|
T Consensus       230 -~~~----~~~~~~~~~~li~~ll~-~p~~R~t~~~l~~h  263 (330)
T cd05601         230 -FPE----DPKVSSDFLDLIQSLLC-GQKERLGYEGLCCH  263 (330)
T ss_pred             -CCC----CCCCCHHHHHHHHHHcc-ChhhCCCHHHHhCC
Confidence             000    01234567889999998 99999999999865

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=1.8e-39  Score=338.17  Aligned_cols=250  Identities=17%  Similarity=0.227  Sum_probs=196.8

Q ss_pred             cccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCCC
Q 003296          561 NVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPK  639 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~  639 (833)
                      +.||+|+||.||+|... +|+.||+|.+....   .......|.+|++++++++||||++++++|...+..++||||+++
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   77 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETL---PPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQG   77 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccC---CHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccC
Confidence            46899999999999974 79999999884211   112346799999999999999999999999999999999999999


Q ss_pred             CChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCcc
Q 003296          640 GTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL  719 (833)
Q Consensus       640 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~  719 (833)
                      |+|.+++... ...++|.+++.++.|++.||+|||   +.+|+||||||+||+++.++.+|++|||+++...........
T Consensus        78 ~~L~~~~~~~-~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~  153 (252)
T cd05084          78 GDFLTFLRTE-GPRLKVKELIQMVENAAAGMEYLE---SKHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTG  153 (252)
T ss_pred             CcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccchheEEEcCCCcEEECccccCcccccccccccC
Confidence            9999999753 345899999999999999999999   789999999999999999999999999998765322111111


Q ss_pred             ccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCCchhHH
Q 003296          720 STVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVR  798 (833)
Q Consensus       720 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (833)
                      ....++..|+|||++.+..++.++|||||||++|||++ |..||.......  ...........      ..      ..
T Consensus       154 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~~--~~~~~~~~~~~------~~------~~  219 (252)
T cd05084         154 GMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQQ--TREAIEQGVRL------PC------PE  219 (252)
T ss_pred             CCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCHHH--HHHHHHcCCCC------CC------cc
Confidence            11223567999999988889999999999999999998 888886433211  11111110000      00      11


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          799 SQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       799 ~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                      ..+.++.+++.+|++.+|++|||+.||.++|++
T Consensus       220 ~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~  252 (252)
T cd05084         220 LCPDAVYRLMERCWEYDPGQRPSFSTVHQELQS  252 (252)
T ss_pred             cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHhC
Confidence            234578899999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-40  Score=340.15  Aligned_cols=250  Identities=18%  Similarity=0.281  Sum_probs=213.6

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      ..-|+..+.||+|.|+.|-.|+. =+|..||||++.+. + .+........+|++.|+-++|||||++|++...+..+||
T Consensus        17 AGLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKT-K-lD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyL   94 (864)
T KOG4717|consen   17 AGLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKT-K-LDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYL   94 (864)
T ss_pred             eeeehhhhhhcCCceehhhhhhhhcccceeEEEEeccc-c-cchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEE
Confidence            34566778899999999999986 48999999999532 2 233345678899999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee-CCCCCceeccceeeeeeC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL-KSLKEPQIGDIELCKVID  711 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill-~~~~~~ki~dfgl~~~~~  711 (833)
                      |+|.-++|||+|++-++ ...+.+....+++.||..|+.|+|   ...+||||+||+||.+ .+-|-+|+.|||++..+.
T Consensus        95 iLELGD~GDl~DyImKH-e~Gl~E~La~kYF~QI~~AI~YCH---qLHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~  170 (864)
T KOG4717|consen   95 ILELGDGGDLFDYIMKH-EEGLNEDLAKKYFAQIVHAISYCH---QLHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQ  170 (864)
T ss_pred             EEEecCCchHHHHHHhh-hccccHHHHHHHHHHHHHHHHHHh---hhhhhcccCCcceeEEeeecCceEeeeccccccCC
Confidence            99999999999999865 345889999999999999999999   7789999999999877 466899999999998876


Q ss_pred             CCCCCCccccccccccccccccccCCccc-ccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVT-MAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                      ++.   ...+.||+..|-|||++.+..|+ +++||||+|||||-+++|++||.+.++-           +.+..++|..+
T Consensus       171 PG~---kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDS-----------ETLTmImDCKY  236 (864)
T KOG4717|consen  171 PGK---KLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDS-----------ETLTMIMDCKY  236 (864)
T ss_pred             Ccc---hhhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccch-----------hhhhhhhcccc
Confidence            665   45789999999999999999998 7899999999999999999999866553           33445555554


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLR  827 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~  827 (833)
                      .-+    ...+.++.++|..||..||++|.+.+||+.
T Consensus       237 tvP----shvS~eCrdLI~sMLvRdPkkRAslEeI~s  269 (864)
T KOG4717|consen  237 TVP----SHVSKECRDLIQSMLVRDPKKRASLEEIVS  269 (864)
T ss_pred             cCc----hhhhHHHHHHHHHHHhcCchhhccHHHHhc
Confidence            432    356789999999999999999999999975

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=1.5e-39  Score=340.62  Aligned_cols=257  Identities=22%  Similarity=0.292  Sum_probs=209.6

Q ss_pred             HHHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      ...+|...+.||+|+||.||+|...++..+|+|.+....    ......+.+|+.++++++||||+++++++...+..++
T Consensus         4 ~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~----~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l   79 (261)
T cd05148           4 PREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDD----LLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYI   79 (261)
T ss_pred             cHHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccc----hhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEE
Confidence            455688889999999999999999889999999984221    1234679999999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||||+++|+|.++++......++|.++..++.|++.|++|||   ..+|+||||||+||++++++.+|++|||++.....
T Consensus        80 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH---~~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~  156 (261)
T cd05148          80 ITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLE---EQNSIHRDLAARNILVGEDLVCKVADFGLARLIKE  156 (261)
T ss_pred             EEeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccCcceEEEcCCceEEEccccchhhcCC
Confidence            999999999999998755567899999999999999999999   78899999999999999999999999999976643


Q ss_pred             CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      ...  ......++..|+|||+.....++.++|||||||++|||++ |+.||...... +...... .....      .. 
T Consensus       157 ~~~--~~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~~-~~~~~~~-~~~~~------~~-  225 (261)
T cd05148         157 DVY--LSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNH-EVYDQIT-AGYRM------PC-  225 (261)
T ss_pred             ccc--cccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCHH-HHHHHHH-hCCcC------CC-
Confidence            221  1123456778999999988889999999999999999998 89999654321 1111111 10000      00 


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                           ....+..+.+++.+||+.||++|||++|+.+.|+++
T Consensus       226 -----~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~~  261 (261)
T cd05148         226 -----PAKCPQEIYKIMLECWAAEPEDRPSFKALREELDNI  261 (261)
T ss_pred             -----CCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhcC
Confidence                 012345678999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=1.8e-40  Score=366.57  Aligned_cols=255  Identities=15%  Similarity=0.179  Sum_probs=198.9

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|+..+.||+|+||.||+|+. .+|+.||||++.. .........+.+.+|++++++++|||||++++++.+++..|+||
T Consensus         2 ~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~-~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (376)
T cd05598           2 MFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRK-ADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM   80 (376)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcH-HHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEE
Confidence            577889999999999999996 4789999999942 22222234567899999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      |||++|+|.+++.+  ...+++.....++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||+|.......
T Consensus        81 E~~~~g~L~~~i~~--~~~~~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~~  155 (376)
T cd05598          81 DYIPGGDMMSLLIR--LGIFEEDLARFYIAELTCAIESVH---KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTH  155 (376)
T ss_pred             eCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCCHHHEEECCCCCEEEEeCCCCccccccc
Confidence            99999999999976  346888888999999999999999   7899999999999999999999999999975321000


Q ss_pred             -----------------------------------------CCCccccccccccccccccccCCcccccCcchhhHHHHH
Q 003296          715 -----------------------------------------STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILL  753 (833)
Q Consensus       715 -----------------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~  753 (833)
                                                               ........+||+.|||||++.+..++.++|||||||++|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvily  235 (376)
T cd05598         156 DSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILY  235 (376)
T ss_pred             cccccccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccceee
Confidence                                                     000012357999999999999889999999999999999


Q ss_pred             HHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCC---CHHHHHHH
Q 003296          754 ELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARP---KMKSVLRM  828 (833)
Q Consensus       754 elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rp---s~~evl~~  828 (833)
                      ||++|+.||.+......... ........      ....    ......++.+++.+|+ .+|.+|+   ++.|+++|
T Consensus       236 ell~G~~Pf~~~~~~~~~~~-i~~~~~~~------~~~~----~~~~s~~~~~li~~l~-~~p~~R~~~~t~~ell~h  301 (376)
T cd05598         236 EMLVGQPPFLADTPAETQLK-VINWETTL------HIPS----QAKLSREASDLILRLC-CGAEDRLGKNGADEIKAH  301 (376)
T ss_pred             ehhhCCCCCCCCCHHHHHHH-HhccCccc------cCCC----CCCCCHHHHHHHHHHh-cCHhhcCCCCCHHHHhCC
Confidence            99999999986543322111 11100000      0000    0112345677788876 5999999   89999875

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=1.5e-39  Score=343.96  Aligned_cols=256  Identities=20%  Similarity=0.277  Sum_probs=199.5

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCc----eEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGM----SYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS  629 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~----~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~  629 (833)
                      .+|+..+.||+|+||.||+|.. .+|.    .||+|.+...   ......+++..|+.++++++|||||++++++. ...
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~---~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~-~~~   82 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDR---SGRQTFQEITDHMLAMGSLDHAYIVRLLGICP-GAS   82 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccc---cchHHHHHHHHHHHHHhcCCCCCcceEEEEEC-CCc
Confidence            4677889999999999999986 3555    4777777321   11123457888999999999999999999886 456


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                      .++|+||+++|+|.++++.. ...++|..+..++.|++.||+|||   +.+++||||||+||++++++.+|++|||+++.
T Consensus        83 ~~~i~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~  158 (279)
T cd05111          83 LQLVTQLSPLGSLLDHVRQH-RDSLDPQRLLNWCVQIAKGMYYLE---EHRMVHRNLAARNILLKSDSIVQIADFGVADL  158 (279)
T ss_pred             cEEEEEeCCCCcHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHH---HCCEeccccCcceEEEcCCCcEEEcCCcccee
Confidence            78999999999999999753 346899999999999999999999   78899999999999999999999999999987


Q ss_pred             eCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ..............|+..|+|||++.+..++.++|||||||++||++| |+.||.+.... .. ...........   .+
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~-~~-~~~~~~~~~~~---~~  233 (279)
T cd05111         159 LYPDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPH-EV-PDLLEKGERLA---QP  233 (279)
T ss_pred             ccCCCcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCHH-HH-HHHHHCCCcCC---CC
Confidence            644332222234567889999999988889999999999999999998 99999754321 11 11111111100   00


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .         .....+.+++.+||+.||++|||+.|+++.|+.+
T Consensus       234 ~---------~~~~~~~~li~~c~~~~p~~Rps~~el~~~l~~~  268 (279)
T cd05111         234 Q---------ICTIDVYMVMVKCWMIDENVRPTFKELANEFTRM  268 (279)
T ss_pred             C---------CCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHH
Confidence            0         1123567889999999999999999999998764

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=6.7e-40  Score=371.21  Aligned_cols=256  Identities=20%  Similarity=0.204  Sum_probs=204.0

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC----
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD----  628 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~----  628 (833)
                      ...|...+.||+|+||+||+|.. .+|+.||||++.....  .......+.+|+.++..++|+|||++++.+...+    
T Consensus        31 ~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~--~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~  108 (496)
T PTZ00283         31 AKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGM--SEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNP  108 (496)
T ss_pred             CCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccC--CHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCc
Confidence            45788889999999999999986 5899999999843211  1223467889999999999999999988776432    


Q ss_pred             ----ceEEEEeeCCCCChhhhhhcCC--CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceec
Q 003296          629 ----SAYLFYEYAPKGTLFDVLHGCL--ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIG  702 (833)
Q Consensus       629 ----~~~lv~ey~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~  702 (833)
                          ..++||||+++|+|.++++...  ...+++..+..++.|++.||+|+|   +.+|+||||||+|||++.++.+||+
T Consensus       109 ~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH---~~~IiHrDLKP~NILl~~~~~vkL~  185 (496)
T PTZ00283        109 ENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVH---SKHMIHRDIKSANILLCSNGLVKLG  185 (496)
T ss_pred             ccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEeCCCCEEEE
Confidence                3689999999999999997532  246889999999999999999999   7899999999999999999999999


Q ss_pred             cceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccc
Q 003296          703 DIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL  782 (833)
Q Consensus       703 dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~  782 (833)
                      |||+++..............+||+.|||||++.+..++.++|||||||++|||++|+.||.+.. ....+......  ..
T Consensus       186 DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~-~~~~~~~~~~~--~~  262 (496)
T PTZ00283        186 DFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGEN-MEEVMHKTLAG--RY  262 (496)
T ss_pred             ecccCeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC-HHHHHHHHhcC--CC
Confidence            9999987643322222345789999999999999899999999999999999999999997543 22222221111  00


Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          783 DHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                          ++ .      ....+.++.+++.+||+.||++||++.|++++
T Consensus       263 ----~~-~------~~~~~~~l~~li~~~L~~dP~~RPs~~ell~~  297 (496)
T PTZ00283        263 ----DP-L------PPSISPEMQEIVTALLSSDPKRRPSSSKLLNM  297 (496)
T ss_pred             ----CC-C------CCCCCHHHHHHHHHHcccChhhCcCHHHHHhC
Confidence                00 0      01234568899999999999999999999875

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=1.9e-39  Score=347.08  Aligned_cols=260  Identities=20%  Similarity=0.265  Sum_probs=206.2

Q ss_pred             HHhcCCccccccCcccEEEEEEc------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEec
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLA  626 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~  626 (833)
                      .++|...+.||+|+||.||+|..      .++..||||+++....   ....+.|.+|+++++++ +||||++++++|..
T Consensus        34 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~  110 (302)
T cd05055          34 RNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAH---SSEREALMSELKIMSHLGNHENIVNLLGACTI  110 (302)
T ss_pred             HHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCC---hHHHHHHHHHHHHHHhccCCCCcceEEEEEec
Confidence            45788899999999999999974      2456899999842211   12246799999999999 79999999999999


Q ss_pred             CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceecccee
Q 003296          627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIEL  706 (833)
Q Consensus       627 ~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl  706 (833)
                      .+..++||||+++|+|.++++......+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.+|++|||+
T Consensus       111 ~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~l~dfg~  187 (302)
T cd05055         111 GGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNVLLTHGKIVKICDFGL  187 (302)
T ss_pred             CCceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeehhhhccceEEEcCCCeEEECCCcc
Confidence            999999999999999999998644445899999999999999999999   78899999999999999999999999999


Q ss_pred             eeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccccccc
Q 003296          707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHI  785 (833)
Q Consensus       707 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  785 (833)
                      ++...............++..|+|||++.+..++.++|||||||++|||++ |+.||............ .......   
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~~~~~~~~-~~~~~~~---  263 (302)
T cd05055         188 ARDIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDSKFYKL-IKEGYRM---  263 (302)
T ss_pred             cccccCCCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCchHHHHHH-HHcCCcC---
Confidence            986543221111123456788999999988889999999999999999998 99999754332221111 1110000   


Q ss_pred             ccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          786 LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       786 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                         ...      ...+.++.+++.+|++.+|++|||+.|+++.|+++
T Consensus       264 ---~~~------~~~~~~~~~li~~cl~~~p~~Rpt~~ell~~l~~~  301 (302)
T cd05055         264 ---AQP------EHAPAEIYDIMKTCWDADPLKRPTFKQIVQLIGKQ  301 (302)
T ss_pred             ---CCC------CCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHhh
Confidence               000      11234688999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=2.6e-39  Score=337.79  Aligned_cols=252  Identities=24%  Similarity=0.341  Sum_probs=205.8

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|+..+.||+|+||.||+|+.. +|+.||+|.+....  ......+++.+|++++++++||||+++++++..++..++||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   78 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSK--MNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVM   78 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhh--CCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEE
Confidence            3667789999999999999974 78999999984221  11234578999999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++++|.++++......+++.++..++.|++.||.|||   ..+|+||||||+||+++.++.+|++|||+++......
T Consensus        79 e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH---~~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~  155 (256)
T cd08529          79 EYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLH---SKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNT  155 (256)
T ss_pred             EeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEEeCCCCEEEcccccceeccCcc
Confidence            9999999999998754567899999999999999999999   7899999999999999999999999999998765432


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCc
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS  794 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (833)
                      .  ......|++.|+|||+..+..++.++|||||||++|||++|+.||....... ...... . .....     .    
T Consensus       156 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-~~~~~~-~-~~~~~-----~----  221 (256)
T cd08529         156 N--FANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQGA-LILKII-R-GVFPP-----V----  221 (256)
T ss_pred             c--hhhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHH-c-CCCCC-----C----
Confidence            2  1234578999999999998889999999999999999999999997544211 111111 1 00000     0    


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          795 LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       795 ~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        ......++.+++.+||+.+|++||++.|++++
T Consensus       222 --~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~  253 (256)
T cd08529         222 --SQMYSQQLAQLIDQCLTKDYRQRPDTFQLLRN  253 (256)
T ss_pred             --ccccCHHHHHHHHHHccCCcccCcCHHHHhhC
Confidence              01234578899999999999999999999875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=1.7e-39  Score=357.85  Aligned_cols=260  Identities=20%  Similarity=0.260  Sum_probs=203.8

Q ss_pred             HHhcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEec
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLA  626 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~  626 (833)
                      .+++...+.||+|+||.||+|++.      .+..||||+++....   ....+.+.+|+++|.++. |||||+++++|..
T Consensus        36 ~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~---~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~  112 (401)
T cd05107          36 RDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTAR---SSEKQALMSELKIMSHLGPHLNIVNLLGACTK  112 (401)
T ss_pred             HHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCC---hhHHHHHHHHHHHHHhcCCCCCeEEEEEEEcc
Confidence            446777899999999999999853      356899999953211   122457899999999997 9999999999999


Q ss_pred             CCceEEEEeeCCCCChhhhhhcCCC-------------------------------------------------------
Q 003296          627 SDSAYLFYEYAPKGTLFDVLHGCLE-------------------------------------------------------  651 (833)
Q Consensus       627 ~~~~~lv~ey~~~g~L~~~l~~~~~-------------------------------------------------------  651 (833)
                      ++..++|||||++|+|.++++....                                                       
T Consensus       113 ~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (401)
T cd05107         113 GGPIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPM  192 (401)
T ss_pred             CCCcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccch
Confidence            9999999999999999999974311                                                       


Q ss_pred             -----------------------------------------CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccc
Q 003296          652 -----------------------------------------NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRN  690 (833)
Q Consensus       652 -----------------------------------------~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~N  690 (833)
                                                               ..++|.....++.|++.||+|||   ..+|+||||||+|
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrdlkp~N  269 (401)
T cd05107         193 QDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLA---SKNCVHRDLAARN  269 (401)
T ss_pred             hcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcCcccCCcce
Confidence                                                     24678888999999999999999   7899999999999


Q ss_pred             eeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHH
Q 003296          691 IFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELA  769 (833)
Q Consensus       691 ill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~  769 (833)
                      ||+++++.+|++|||+++...............|++.|||||++.+..++.++|||||||++|||++ |+.||.......
T Consensus       270 iLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~  349 (401)
T cd05107         270 VLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNE  349 (401)
T ss_pred             EEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCchH
Confidence            9999999999999999986532221111223467889999999988889999999999999999998 889986433222


Q ss_pred             HHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          770 KWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .... ........      ..+      .....++.+++.+||+.+|++||+++||++.|+++
T Consensus       350 ~~~~-~~~~~~~~------~~p------~~~~~~l~~li~~cl~~~P~~RPs~~ell~~L~~~  399 (401)
T cd05107         350 QFYN-AIKRGYRM------AKP------AHASDEIYEIMQKCWEEKFEIRPDFSQLVHLVGDL  399 (401)
T ss_pred             HHHH-HHHcCCCC------CCC------CCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence            1111 11111100      000      11245788999999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=6.8e-40  Score=353.34  Aligned_cols=240  Identities=19%  Similarity=0.229  Sum_probs=193.6

Q ss_pred             cccccCcccEEEEEEc----CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEee
Q 003296          561 NVELKTRFSTYYKAVM----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEY  636 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey  636 (833)
                      +.||+|+||.||++..    .+|+.||||++....  ........+.+|++++++++|||||++++++..++..|+||||
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~   79 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKAT--LKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDF   79 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHH--hhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcC
Confidence            5799999999999875    368999999994221  1222345678999999999999999999999999999999999


Q ss_pred             CCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCC
Q 003296          637 APKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST  716 (833)
Q Consensus       637 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~  716 (833)
                      +++|+|.+++..  ...+++..+..++.|+++||+|||   +.+|+||||||+||++++++.+||+|||+++....... 
T Consensus        80 ~~~~~L~~~l~~--~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~-  153 (318)
T cd05582          80 LRGGDLFTRLSK--EVMFTEEDVKFYLAELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK-  153 (318)
T ss_pred             CCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHeEECCCCcEEEeeccCCcccCCCCC-
Confidence            999999999975  346899999999999999999999   78999999999999999999999999999886543221 


Q ss_pred             CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchh
Q 003296          717 GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLA  796 (833)
Q Consensus       717 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  796 (833)
                       ......||+.|||||++.+..++.++|||||||++|||++|+.||....... ..........        .++     
T Consensus       154 -~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~-~~~~i~~~~~--------~~p-----  218 (318)
T cd05582         154 -KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRKE-TMTMILKAKL--------GMP-----  218 (318)
T ss_pred             -ceecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCCHHH-HHHHHHcCCC--------CCC-----
Confidence             2245689999999999988889999999999999999999999997543321 1111111100        011     


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCHHH
Q 003296          797 VRSQMLTVLKVAVACVSVSPEARPKMKS  824 (833)
Q Consensus       797 ~~~~~~~~~~l~~~cl~~dP~~Rps~~e  824 (833)
                       ......+.+++.+||+.||++||++.+
T Consensus       219 -~~~~~~~~~li~~~l~~~P~~R~~a~~  245 (318)
T cd05582         219 -QFLSPEAQSLLRALFKRNPANRLGAGP  245 (318)
T ss_pred             -CCCCHHHHHHHHHHhhcCHhHcCCCCC
Confidence             112346778999999999999999544

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=3.3e-39  Score=336.83  Aligned_cols=252  Identities=21%  Similarity=0.258  Sum_probs=202.6

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      ++|+..+.||+|+||.||+|...++..||||.+... .    ...++|.+|++++++++||||++++++|...+..++||
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~-~----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   78 (256)
T cd05113           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-S----MSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVT   78 (256)
T ss_pred             HHeEEeeEecCcccceEEEEEecCCCcEEEEEcCCC-c----ccHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEE
Confidence            356778899999999999999877778999998422 1    22467999999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.+++.... ..++|.+++.++.|++.||+|||   +.+++||||||+||+++.++.+|++|||.++......
T Consensus        79 e~~~~~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~  154 (256)
T cd05113          79 EYMSNGCLLNYLREHG-KRFQPSQLLEMCKDVCEGMAYLE---SKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDE  154 (256)
T ss_pred             EcCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccCcceEEEcCCCCEEECCCccceecCCCc
Confidence            9999999999997532 36899999999999999999999   7899999999999999999999999999988654322


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      .. ......++..|+|||+..+..++.++|||||||++|||++ |+.||....... ...... .....      ...  
T Consensus       155 ~~-~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~-~~~~~~-~~~~~------~~~--  223 (256)
T cd05113         155 YT-SSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSE-TVEKVS-QGLRL------YRP--  223 (256)
T ss_pred             ee-ecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCHHH-HHHHHh-cCCCC------CCC--
Confidence            11 1122346678999999988889999999999999999999 999997543321 111111 11100      000  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLL  830 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~  830 (833)
                          ...+..+.+++.+||+.||.+||++.++++.|+
T Consensus       224 ----~~~~~~~~~li~~cl~~~p~~Rp~~~~ll~~~~  256 (256)
T cd05113         224 ----HLASEKVYAIMYSCWHEKAEERPTFQQLLSSIE  256 (256)
T ss_pred             ----CCCCHHHHHHHHHHcCCCcccCCCHHHHHHhhC
Confidence                012357789999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=2.1e-39  Score=349.83  Aligned_cols=244  Identities=22%  Similarity=0.232  Sum_probs=195.4

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCCceEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~~~~lv  633 (833)
                      +|+..+.||+|+||.||+|... +|+.||||++. +.........+.+..|+++++.+. ||+|+++++++..++..|+|
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~-~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv   79 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILK-KDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFV   79 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEE-HHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEE
Confidence            3677889999999999999964 78999999994 222222334567889999999886 56788899999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++..  ...+++.++..++.|++.||+|||   +.+|+||||||+|||+++++.+||+|||+++.....
T Consensus        80 ~Ey~~~g~L~~~i~~--~~~l~~~~~~~i~~qi~~al~~lH---~~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~  154 (323)
T cd05615          80 MEYVNGGDLMYHIQQ--VGKFKEPQAVFYAAEISVGLFFLH---RRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVD  154 (323)
T ss_pred             EcCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEEeccccccccCCC
Confidence            999999999999875  346899999999999999999999   789999999999999999999999999998754322


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      ..  ......||+.|||||++.+..++.++||||+||++|||++|+.||.+.... ...........        ..+  
T Consensus       155 ~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~-~~~~~i~~~~~--------~~p--  221 (323)
T cd05615         155 GV--TTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDED-ELFQSIMEHNV--------SYP--  221 (323)
T ss_pred             Cc--cccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCHH-HHHHHHHhCCC--------CCC--
Confidence            21  223467999999999999888999999999999999999999999754332 11111111100        000  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKM  822 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~  822 (833)
                          ...+.++.+++.+|++.||++|++.
T Consensus       222 ----~~~~~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05615         222 ----KSLSKEAVSICKGLMTKHPSKRLGC  246 (323)
T ss_pred             ----ccCCHHHHHHHHHHcccCHhhCCCC
Confidence                1223467899999999999999984

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=5e-40  Score=354.90  Aligned_cols=240  Identities=21%  Similarity=0.251  Sum_probs=189.9

Q ss_pred             cccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHH-HHhcCCCCCcccceEEEecCCceEEEEeeCC
Q 003296          561 NVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELE-VLGKLSNSNVMTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~-~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~  638 (833)
                      ++||+|+||.||+|+.. +|+.||+|++... ........+.+.+|.. +++.++|||||++++++.+.+..|+||||++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~   79 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKK-TILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVN   79 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHH-HHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCC
Confidence            46999999999999974 7899999999422 2222233455666665 6788999999999999999999999999999


Q ss_pred             CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCc
Q 003296          639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS  718 (833)
Q Consensus       639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~  718 (833)
                      +|+|.+++..  ...+++.++..++.|+++||+|||   ..+|+||||||+||+++.++.+||+|||+++......  ..
T Consensus        80 ~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~L~~lH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~--~~  152 (321)
T cd05603          80 GGELFFHLQR--ERCFLEPRARFYAAEVASAIGYLH---SLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPE--ET  152 (321)
T ss_pred             CCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeEECCCCCEEEccCCCCccCCCCC--Cc
Confidence            9999998875  345788888999999999999999   7899999999999999999999999999987532221  12


Q ss_pred             cccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHH
Q 003296          719 LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVR  798 (833)
Q Consensus       719 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (833)
                      ....+||+.|+|||++.+..++.++|||||||++|||++|+.||..... ...........  .      .+.      .
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-~~~~~~i~~~~--~------~~~------~  217 (321)
T cd05603         153 TSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDV-SQMYDNILHKP--L------QLP------G  217 (321)
T ss_pred             cccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCCH-HHHHHHHhcCC--C------CCC------C
Confidence            2456799999999999888899999999999999999999999975432 22222111110  0      011      1


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCHH
Q 003296          799 SQMLTVLKVAVACVSVSPEARPKMK  823 (833)
Q Consensus       799 ~~~~~~~~l~~~cl~~dP~~Rps~~  823 (833)
                      ....++.+++.+|++.||++||++.
T Consensus       218 ~~~~~~~~li~~~l~~~p~~R~~~~  242 (321)
T cd05603         218 GKTVAACDLLVGLLHKDQRRRLGAK  242 (321)
T ss_pred             CCCHHHHHHHHHHccCCHhhcCCCC
Confidence            1234678999999999999999764

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=1.7e-39  Score=351.24  Aligned_cols=244  Identities=21%  Similarity=0.216  Sum_probs=191.4

Q ss_pred             cccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHH-HHhcCCCCCcccceEEEecCCceEEEEeeCC
Q 003296          561 NVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELE-VLGKLSNSNVMTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~-~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~  638 (833)
                      +.||+|+||.||+|+.. +++.||+|++... ..........+.+|.. +++.++|||||++++++..++..|+||||++
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~   79 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKK-AILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYIN   79 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHH-HHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCC
Confidence            36999999999999975 6789999999422 2222223345555554 5688999999999999999999999999999


Q ss_pred             CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCc
Q 003296          639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS  718 (833)
Q Consensus       639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~  718 (833)
                      +|+|.+++..  ...+.+.....++.|+++||+|||   +.+|+||||||+|||++.++.+||+|||+++......  ..
T Consensus        80 ~~~L~~~~~~--~~~~~~~~~~~~~~qi~~~L~~lH---~~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~--~~  152 (325)
T cd05602          80 GGELFYHLQR--ERCFLEPRARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHN--GT  152 (325)
T ss_pred             CCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEECCCCCEEEccCCCCcccccCC--CC
Confidence            9999999976  345778888889999999999999   7899999999999999999999999999997543221  12


Q ss_pred             cccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHH
Q 003296          719 LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVR  798 (833)
Q Consensus       719 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (833)
                      ....+||+.|||||++.+..++.++||||+||++|||++|+.||.+...... ..........    ..          .
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~-~~~i~~~~~~----~~----------~  217 (325)
T cd05602         153 TSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEM-YDNILNKPLQ----LK----------P  217 (325)
T ss_pred             cccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCHHHH-HHHHHhCCcC----CC----------C
Confidence            2456799999999999998999999999999999999999999975443221 1111111000    00          1


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 003296          799 SQMLTVLKVAVACVSVSPEARPKMKSVLR  827 (833)
Q Consensus       799 ~~~~~~~~l~~~cl~~dP~~Rps~~evl~  827 (833)
                      .....+.+++.+|++.||.+||++.+.+.
T Consensus       218 ~~~~~~~~li~~~l~~~p~~R~~~~~~~~  246 (325)
T cd05602         218 NITNSARHLLEGLLQKDRTKRLGAKDDFM  246 (325)
T ss_pred             CCCHHHHHHHHHHcccCHHHCCCCCCCHH
Confidence            22346778999999999999999875443

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=5.6e-39  Score=338.69  Aligned_cols=257  Identities=18%  Similarity=0.231  Sum_probs=201.2

Q ss_pred             cCCccccccCcccEEEEEEcC----CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc---
Q 003296          557 ANPLNVELKTRFSTYYKAVMP----SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS---  629 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~---  629 (833)
                      |...+.||+|+||.||+|++.    .+..||||+++....  .......|.+|++++++++||||+++++++...+.   
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   78 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIH--TYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQK   78 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcC--CHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCcccc
Confidence            456789999999999999863    247899999842211  11234679999999999999999999999876554   


Q ss_pred             ---eEEEEeeCCCCChhhhhhcCC----CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceec
Q 003296          630 ---AYLFYEYAPKGTLFDVLHGCL----ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIG  702 (833)
Q Consensus       630 ---~~lv~ey~~~g~L~~~l~~~~----~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~  702 (833)
                         .++||||+++|+|.+++....    ...+++..+..++.|++.||+|||   ..+|+||||||+||++++++.+|++
T Consensus        79 ~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~  155 (273)
T cd05035          79 IPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLS---NRNFIHRDLAARNCMLREDMTVCVA  155 (273)
T ss_pred             CcccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHH---hCCeeccccchheEEECCCCeEEEC
Confidence               799999999999999986431    236899999999999999999999   7899999999999999999999999


Q ss_pred             cceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccc
Q 003296          703 DIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDK  781 (833)
Q Consensus       703 dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~  781 (833)
                      |||+++...............++..|+|||++.+..++.++|||||||++|||++ |..||.+... .+........ ..
T Consensus       156 dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~-~~~~~~~~~~-~~  233 (273)
T cd05035         156 DFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVEN-HEIYDYLRHG-NR  233 (273)
T ss_pred             CccceeeccccccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCH-HHHHHHHHcC-CC
Confidence            9999987643332211122345778999999988889999999999999999999 8899865432 2222111111 10


Q ss_pred             ccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          782 LDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       782 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .      ..      ....+.++.+++.+||+.||++|||+.|++++|+++
T Consensus       234 ~------~~------~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~~  272 (273)
T cd05035         234 L------KQ------PEDCLDELYDLMYSCWRADPKDRPTFTKLREVLENI  272 (273)
T ss_pred             C------CC------CcCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            0      01      112345788999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=5.3e-40  Score=365.08  Aligned_cols=255  Identities=19%  Similarity=0.256  Sum_probs=206.3

Q ss_pred             cCCccccccCcccEEEEEEcCCC-ceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEE-ec---C---
Q 003296          557 ANPLNVELKTRFSTYYKAVMPSG-MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYV-LA---S---  627 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~~~-~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~-~~---~---  627 (833)
                      ..+.++|.+|||+.||.|....+ ..||+|++-..    ++...+...+||++|++|+ |||||.+++.. ..   +   
T Consensus        39 v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~----de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~  114 (738)
T KOG1989|consen   39 VTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVN----DEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGV  114 (738)
T ss_pred             EEEEEEEccCCcEEEEEEEecCCCceeeeeeeecC----CHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCce
Confidence            44668999999999999998655 99999999422    3345678899999999998 99999999943 22   1   


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                      -+++|.||||.||.|-|++..+....+++.++++|+.|+|+|+++||.. .++|||||||-+||||+.++..|+||||-|
T Consensus       115 ~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~-~pPiIHRDLKiENvLls~~g~~KLCDFGSa  193 (738)
T KOG1989|consen  115 WEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYL-KPPIIHRDLKIENVLLSADGNYKLCDFGSA  193 (738)
T ss_pred             eEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcC-CCccchhhhhhhheEEcCCCCEEeCccccc
Confidence            2578999999999999999977666799999999999999999999965 688999999999999999999999999987


Q ss_pred             eeeCCCC-CCCcc------ccccccccccccccc---cCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhc
Q 003296          708 KVIDPSK-STGSL------STVAGSVGYIPPEYA---YTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSA  777 (833)
Q Consensus       708 ~~~~~~~-~~~~~------~~~~gt~~y~aPE~~---~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~  777 (833)
                      ....... .....      -...-|+.|+|||++   .+...++|+||||+||+||-|+....||++...          
T Consensus       194 tt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~----------  263 (738)
T KOG1989|consen  194 TTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGK----------  263 (738)
T ss_pred             ccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcc----------
Confidence            6432211 11000      113469999999986   366789999999999999999999999985432          


Q ss_pred             ccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296          778 QQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR  833 (833)
Q Consensus       778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r  833 (833)
                           -.|++..+..+.  ....+..+.+||..||+.||++||++-||+..+.+++
T Consensus       264 -----laIlng~Y~~P~--~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~  312 (738)
T KOG1989|consen  264 -----LAILNGNYSFPP--FPNYSDRLKDLIRTMLQPNPDERPNIYQVLEEIFELA  312 (738)
T ss_pred             -----eeEEeccccCCC--CccHHHHHHHHHHHHhccCcccCCCHHHHHHHHHHHh
Confidence                 234444444332  2356788999999999999999999999999887653

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=8.1e-40  Score=353.76  Aligned_cols=247  Identities=17%  Similarity=0.233  Sum_probs=195.2

Q ss_pred             cccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEEEEeeCC
Q 003296          561 NVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~lv~ey~~  638 (833)
                      +.||+|+||.||+|... +++.||||++.. .........+.+.+|+.++.++ +||||+++++++...+..|+||||++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~-~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   79 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKK-ELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVN   79 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEH-HHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCC
Confidence            46999999999999974 789999999942 2222233456788999999998 69999999999999999999999999


Q ss_pred             CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCc
Q 003296          639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS  718 (833)
Q Consensus       639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~  718 (833)
                      +|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||+++......  ..
T Consensus        80 ~~~L~~~~~~--~~~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~--~~  152 (327)
T cd05617          80 GGDLMFHMQR--QRKLPEEHARFYAAEICIALNFLH---ERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPG--DT  152 (327)
T ss_pred             CCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEeCCCCEEEeccccceeccCCC--Cc
Confidence            9999998875  346999999999999999999999   7899999999999999999999999999997532221  12


Q ss_pred             cccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCc-----cHHHHHHHhhcccccccccccccccCC
Q 003296          719 LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGN-----ELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       719 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      ....+||+.|+|||++.+..++.++|||||||++|||++|+.||....     ....+........         .... 
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~---------~~~~-  222 (327)
T cd05617         153 TSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEK---------PIRI-  222 (327)
T ss_pred             eecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHHhC---------CCCC-
Confidence            245789999999999999899999999999999999999999996311     1112221111110         0000 


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCH------HHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKM------KSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~------~evl~~  828 (833)
                         +...+..+.+++.+||+.||++||++      .++.+|
T Consensus       223 ---p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~h  260 (327)
T cd05617         223 ---PRFLSVKASHVLKGFLNKDPKERLGCQPQTGFSDIKSH  260 (327)
T ss_pred             ---CCCCCHHHHHHHHHHhccCHHHcCCCCCCCCHHHHHcC
Confidence               01123457799999999999999985      566553

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=1.9e-39  Score=344.24  Aligned_cols=256  Identities=18%  Similarity=0.260  Sum_probs=202.0

Q ss_pred             hcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296          556 VANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS  629 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~  629 (833)
                      +|...+.||+|+||.||+|...      +++.||||+++....   ....+.|.+|+.++++++|||||++++++...+.
T Consensus         6 ~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~   82 (283)
T cd05091           6 TVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAE---GPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQP   82 (283)
T ss_pred             HHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCC---HHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCc
Confidence            4556788999999999999863      357899999953221   1224678999999999999999999999999999


Q ss_pred             eEEEEeeCCCCChhhhhhcCC--------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC
Q 003296          630 AYLFYEYAPKGTLFDVLHGCL--------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS  695 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~  695 (833)
                      .++++||+++++|.+++....              ...+++..+..++.|++.||+|+|   +.+|+||||||+||++++
T Consensus        83 ~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH---~~gi~H~dlkp~Nil~~~  159 (283)
T cd05091          83 LSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLS---SHHVVHKDLATRNVLVFD  159 (283)
T ss_pred             eEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH---HcCccccccchhheEecC
Confidence            999999999999999985321              235889999999999999999999   789999999999999999


Q ss_pred             CCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHH
Q 003296          696 LKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLR  774 (833)
Q Consensus       696 ~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~  774 (833)
                      ++.+|++|||+++...............+++.|+|||++.+..++.++|||||||++|||++ |..||.+... .++...
T Consensus       160 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~-~~~~~~  238 (283)
T cd05091         160 KLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN-QDVIEM  238 (283)
T ss_pred             CCceEecccccccccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCCH-HHHHHH
Confidence            99999999999886643322222233456789999999988889999999999999999998 8888865432 222222


Q ss_pred             hhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          775 NSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                      .... .. ..     ..      ...+..+.+++.+||+.+|++||+++||++.|+.
T Consensus       239 i~~~-~~-~~-----~~------~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~l~~  282 (283)
T cd05091         239 IRNR-QV-LP-----CP------DDCPAWVYTLMLECWNEFPSRRPRFKDIHSRLRT  282 (283)
T ss_pred             HHcC-Cc-CC-----CC------CCCCHHHHHHHHHHhCCCcccCCCHHHHHHHhhC
Confidence            1111 10 00     00      1234467899999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=1e-39  Score=358.26  Aligned_cols=259  Identities=16%  Similarity=0.182  Sum_probs=202.5

Q ss_pred             HHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      ...++|+..+.||+|+||.||+|... +++.||+|++.. .........+.+.+|+++++.++|||||++++++..++..
T Consensus        40 ~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~-~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~  118 (371)
T cd05622          40 MKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSK-FEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYL  118 (371)
T ss_pred             cchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEH-HHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEE
Confidence            34578889999999999999999975 789999999842 2222223345688999999999999999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      |+|||||++|+|.+++..   ..+++..+..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||+++..
T Consensus       119 ~lv~Ey~~gg~L~~~~~~---~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDLkp~NIll~~~~~ikL~DfG~a~~~  192 (371)
T cd05622         119 YMVMEYMPGGDLVNLMSN---YDVPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKM  192 (371)
T ss_pred             EEEEcCCCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHH---HCCEEeCCCCHHHEEECCCCCEEEEeCCceeEc
Confidence            999999999999999975   34788888899999999999999   889999999999999999999999999999876


Q ss_pred             CCCCCCCccccccccccccccccccCC----cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc
Q 003296          711 DPSKSTGSLSTVAGSVGYIPPEYAYTM----RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL  786 (833)
Q Consensus       711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~----~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  786 (833)
                      ..... ......+||+.|||||++.+.    .++.++|||||||++|||++|+.||........+.. .........   
T Consensus       193 ~~~~~-~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~-i~~~~~~~~---  267 (371)
T cd05622         193 NKEGM-VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSK-IMNHKNSLT---  267 (371)
T ss_pred             CcCCc-ccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCCCHHHHHHH-HHcCCCccc---
Confidence            43321 122456899999999998653    378999999999999999999999986544322211 111101000   


Q ss_pred             cccccCCchhHHHHHHHHHHHHHhccCCCCCC--CCCHHHHHHHH
Q 003296          787 DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEA--RPKMKSVLRML  829 (833)
Q Consensus       787 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~--Rps~~evl~~L  829 (833)
                         .+    .....+..+.+++.+|+..+|.+  ||++.|+++|.
T Consensus       268 ---~~----~~~~~s~~~~~li~~~L~~~~~r~~r~~~~ei~~h~  305 (371)
T cd05622         268 ---FP----DDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHL  305 (371)
T ss_pred             ---CC----CcCCCCHHHHHHHHHHcCChhhhcCCCCHHHHhcCc
Confidence               00    01123456788999999844443  78999998863

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=4.2e-40  Score=355.96  Aligned_cols=243  Identities=20%  Similarity=0.225  Sum_probs=192.2

Q ss_pred             cccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHH-HHhcCCCCCcccceEEEecCCceEEEEeeCC
Q 003296          561 NVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELE-VLGKLSNSNVMTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~-~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~  638 (833)
                      +.||+|+||.||+|+. .+|+.||||++... ........+.+.+|.. +++.++|||||++++++..++..|+||||++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~   79 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKK-IVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVN   79 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHH-HhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCC
Confidence            4689999999999996 47999999999422 2222233456666765 4678999999999999999999999999999


Q ss_pred             CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCc
Q 003296          639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS  718 (833)
Q Consensus       639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~  718 (833)
                      +|+|.+++..  ...+++.++..++.|++.||+|||   +.+|+||||||+|||+++++.+||+|||+++.......  .
T Consensus        80 ~~~L~~~l~~--~~~~~~~~~~~~~~qi~~al~~lH---~~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~--~  152 (325)
T cd05604          80 GGELFFHLQR--ERSFPEPRARFYAAEIASALGYLH---SINIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSD--T  152 (325)
T ss_pred             CCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHeEECCCCCEEEeecCCcccCCCCCC--C
Confidence            9999998875  456899999999999999999999   78999999999999999999999999999875422211  2


Q ss_pred             cccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHH
Q 003296          719 LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVR  798 (833)
Q Consensus       719 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (833)
                      ....+||+.|||||++.+..++.++|||||||++|||++|+.||...... +........ .   ..+.+          
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~-~~~~~~~~~-~---~~~~~----------  217 (325)
T cd05604         153 TTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVA-EMYDNILHK-P---LVLRP----------  217 (325)
T ss_pred             cccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCCHH-HHHHHHHcC-C---ccCCC----------
Confidence            24567999999999999989999999999999999999999999754322 211111111 0   00000          


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCHHHHH
Q 003296          799 SQMLTVLKVAVACVSVSPEARPKMKSVL  826 (833)
Q Consensus       799 ~~~~~~~~l~~~cl~~dP~~Rps~~evl  826 (833)
                      .....+.+++.+|++.||.+||++++.+
T Consensus       218 ~~~~~~~~ll~~ll~~~p~~R~~~~~~~  245 (325)
T cd05604         218 GASLTAWSILEELLEKDRQRRLGAKEDF  245 (325)
T ss_pred             CCCHHHHHHHHHHhccCHHhcCCCCCCH
Confidence            1234677899999999999999886433

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-40  Score=336.26  Aligned_cols=250  Identities=21%  Similarity=0.241  Sum_probs=210.9

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      .+.|..-++||+|+||.||-++. .+|+.+|.|++. +++....+.......|-.+|.+++.|.||.+-.+|++.+.+|+
T Consensus       184 ~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~-KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LCl  262 (591)
T KOG0986|consen  184 KNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLD-KKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCL  262 (591)
T ss_pred             ccceeeeEEEecccccceeEEEEecchhhHHHHHHH-HHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEE
Confidence            45677789999999999999996 589999999994 5555556667788999999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||..|.||||.-+|.......+++.++..+|.+|+.||++||   ..+||.||+||+|||+|+.|+++|+|.|+|..+..
T Consensus       263 VLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH---~~~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~  339 (591)
T KOG0986|consen  263 VLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLH---RRRIVYRDLKPENILLDDHGHVRISDLGLAVEIPE  339 (591)
T ss_pred             EEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHH---hcceeeccCChhheeeccCCCeEeeccceEEecCC
Confidence            999999999999998876678999999999999999999999   88999999999999999999999999999998865


Q ss_pred             CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHH--HHHhhcccccccccccccc
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKW--VLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  790 (833)
                      +..   ....+||.||||||++..+.|+..+|+||+||++|||+.|+.||....+-+.|  +.+....            
T Consensus       340 g~~---~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk~eEvdrr~~~------------  404 (591)
T KOG0986|consen  340 GKP---IRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEKVKREEVDRRTLE------------  404 (591)
T ss_pred             CCc---cccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhhhhhHHHHHHHHhc------------
Confidence            553   24569999999999999999999999999999999999999999755444333  1111111            


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHH
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMK  823 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~  823 (833)
                       .+.......++++.++....|++||++|...+
T Consensus       405 -~~~ey~~kFS~eakslc~~LL~Kdp~~RLGcr  436 (591)
T KOG0986|consen  405 -DPEEYSDKFSEEAKSLCEGLLTKDPEKRLGCR  436 (591)
T ss_pred             -chhhcccccCHHHHHHHHHHHccCHHHhccCC
Confidence             01111234556788899999999999997544

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=3.4e-39  Score=342.28  Aligned_cols=254  Identities=19%  Similarity=0.210  Sum_probs=200.9

Q ss_pred             cCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      |...+.||+|+||+||+|.. .+|+.||+|++.. .........+.+.+|++++++++|+||+++++++..++..++|||
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~-~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e   80 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEK-KRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLT   80 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeeh-hhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEE
Confidence            55668899999999999997 4799999999842 222222334568899999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      |+++|+|.+++.......+++..+..++.|++.||.|||   +.+|+||||||+||++++++.+|++|||++....... 
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH---~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~-  156 (285)
T cd05632          81 IMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLH---RENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGE-  156 (285)
T ss_pred             eccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCCHHHEEECCCCCEEEecCCcceecCCCC-
Confidence            999999999987644456999999999999999999999   7899999999999999999999999999997654322 


Q ss_pred             CCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCch
Q 003296          716 TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSL  795 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  795 (833)
                        ......|+..|+|||++.+..++.++|||||||++|||++|+.||.+.............. .....    ...    
T Consensus       157 --~~~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~~~~~~~~~~-~~~~~----~~~----  225 (285)
T cd05632         157 --SIRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREEVDRRV-LETEE----VYS----  225 (285)
T ss_pred             --cccCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhh-hcccc----ccC----
Confidence              1234579999999999988889999999999999999999999997543321111100000 00000    000    


Q ss_pred             hHHHHHHHHHHHHHhccCCCCCCCCC-----HHHHHHH
Q 003296          796 AVRSQMLTVLKVAVACVSVSPEARPK-----MKSVLRM  828 (833)
Q Consensus       796 ~~~~~~~~~~~l~~~cl~~dP~~Rps-----~~evl~~  828 (833)
                        .....++.+++.+|++.||++||+     ++|++.+
T Consensus       226 --~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~  261 (285)
T cd05632         226 --AKFSEEAKSICKMLLTKDPKQRLGCQEEGAGEVKRH  261 (285)
T ss_pred             --ccCCHHHHHHHHHHccCCHhHcCCCcccChHHHHcC
Confidence              122345678999999999999999     6677654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-40  Score=349.93  Aligned_cols=245  Identities=20%  Similarity=0.263  Sum_probs=200.2

Q ss_pred             cccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCCC
Q 003296          561 NVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPK  639 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~  639 (833)
                      -++|+|.||+||-|++. +...+|||-+..+.    ....+-...||.+.++++|.|||+++|.|..++.+-+.||-+||
T Consensus       581 vVLGKGTYG~VYA~RD~~tqvrIaIKEIpekd----sr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPG  656 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDMDTQVRIAIKEIPEKD----SREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPG  656 (1226)
T ss_pred             EEeecCceeEEEeeccccceeEEEeeeccccc----chhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCC
Confidence            47999999999999974 66789999994322    23345678899999999999999999999999999999999999


Q ss_pred             CChhhhhhcCCCCCC--CHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC-CCCCceeccceeeeeeCCCCCC
Q 003296          640 GTLFDVLHGCLENAL--DWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK-SLKEPQIGDIELCKVIDPSKST  716 (833)
Q Consensus       640 g~L~~~l~~~~~~~l--~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~-~~~~~ki~dfgl~~~~~~~~~~  716 (833)
                      |+|.++|+.. -+++  .+.+.-.+..||++||.|||   ...|||||||-+|||++ -.|.+||+|||.++.+..-.  
T Consensus       657 GSLSsLLrsk-WGPlKDNEstm~fYtkQILeGLkYLH---en~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAgin--  730 (1226)
T KOG4279|consen  657 GSLSSLLRSK-WGPLKDNESTMNFYTKQILEGLKYLH---ENKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGIN--  730 (1226)
T ss_pred             CcHHHHHHhc-cCCCccchhHHHHHHHHHHHHhhhhh---hcceeeccccCCcEEEeeccceEEecccccchhhccCC--
Confidence            9999999853 3455  67788889999999999999   88899999999999997 57899999999999875332  


Q ss_pred             CccccccccccccccccccCC--cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCc
Q 003296          717 GSLSTVAGSVGYIPPEYAYTM--RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS  794 (833)
Q Consensus       717 ~~~~~~~gt~~y~aPE~~~~~--~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (833)
                      ..+.++.||..|||||++..+  .|+.++|||||||++.||.||++||.+-.+...-+.....-            +.-+
T Consensus       731 P~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAAMFkVGmy------------KvHP  798 (1226)
T KOG4279|consen  731 PCTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAAMFKVGMY------------KVHP  798 (1226)
T ss_pred             ccccccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHhhhhhcce------------ecCC
Confidence            245679999999999999754  48999999999999999999999998544432211111100            0112


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 003296          795 LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLR  827 (833)
Q Consensus       795 ~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~  827 (833)
                      +.+.+...++..++.+|+.+||.+||++++++.
T Consensus       799 ~iPeelsaeak~FilrcFepd~~~R~sA~~LL~  831 (1226)
T KOG4279|consen  799 PIPEELSAEAKNFILRCFEPDPCDRPSAKDLLQ  831 (1226)
T ss_pred             CCcHHHHHHHHHHHHHHcCCCcccCccHHHhcc
Confidence            223466778899999999999999999999875

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=9e-39  Score=334.77  Aligned_cols=253  Identities=21%  Similarity=0.278  Sum_probs=203.5

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      ..|...+.||+|+||.||+|++.+...||+|++....     ...+.|.+|++++++++||||+++++++. ++..++||
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~-----~~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~   79 (262)
T cd05071           6 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-----MSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVT   79 (262)
T ss_pred             HHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCc-----cCHHHHHHHHHHHHhCCCCCcceEEEEEC-CCCcEEEE
Confidence            4578889999999999999998777789999994211     23467999999999999999999999874 46689999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.+++.......++|..+..++.|+++||+|+|   +.+|+||||||+||++++++.+|++|||.++......
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~  156 (262)
T cd05071          80 EYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE  156 (262)
T ss_pred             EcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHH---HCCccccccCcccEEEcCCCcEEeccCCceeeccccc
Confidence            9999999999998644456899999999999999999999   7899999999999999999999999999998764332


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      .. ......++..|+|||+..+..++.++|||||||++|||+| |+.||.+......+ ... .....        ..  
T Consensus       157 ~~-~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~~~~~-~~~-~~~~~--------~~--  223 (262)
T cd05071         157 YT-ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVL-DQV-ERGYR--------MP--  223 (262)
T ss_pred             cc-cccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCChHHHH-HHH-hcCCC--------CC--
Confidence            21 1123456778999999988889999999999999999999 88888654322111 111 11000        00  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                        .....+..+.+++.+|++.||++||++.++++.|++
T Consensus       224 --~~~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~  259 (262)
T cd05071         224 --CPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLED  259 (262)
T ss_pred             --CccccCHHHHHHHHHHccCCcccCCCHHHHHHHHHH
Confidence              011344578899999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=2.3e-39  Score=343.39  Aligned_cols=254  Identities=20%  Similarity=0.218  Sum_probs=201.5

Q ss_pred             cCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      |+..+.||+|+||.||+|... +++.||||.+... ........+.+.+|+.++++++|++|+++++++..++..++|||
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~-~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e   80 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKK-RIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehh-hccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEE
Confidence            566789999999999999974 7899999998422 21122233567899999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      |+++|+|.+++.......+++.++..++.|++.||.|||   +.+|+||||||+||++++++.++++|||++....... 
T Consensus        81 ~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~-  156 (285)
T cd05630          81 LMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLH---QERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQ-  156 (285)
T ss_pred             ecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHEEECCCCCEEEeeccceeecCCCc-
Confidence            999999999987544456899999999999999999999   7899999999999999999999999999987654322 


Q ss_pred             CCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCch
Q 003296          716 TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSL  795 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  795 (833)
                        ......||..|||||++.+..++.++|||||||++|||++|+.||........+....... ....    ....    
T Consensus       157 --~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~~~~~~~~~-~~~~----~~~~----  225 (285)
T cd05630         157 --TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLV-KEVQ----EEYS----  225 (285)
T ss_pred             --cccCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccchHHHHHhhh-hhhh----hhcC----
Confidence              1134579999999999998889999999999999999999999997543211110000000 0000    0000    


Q ss_pred             hHHHHHHHHHHHHHhccCCCCCCCCC-----HHHHHHH
Q 003296          796 AVRSQMLTVLKVAVACVSVSPEARPK-----MKSVLRM  828 (833)
Q Consensus       796 ~~~~~~~~~~~l~~~cl~~dP~~Rps-----~~evl~~  828 (833)
                        .....++.+++.+||+.||++|||     ++|+++|
T Consensus       226 --~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~~~~~h  261 (285)
T cd05630         226 --EKFSPDARSLCKMLLCKDPKERLGCQGGGAREVKEH  261 (285)
T ss_pred             --ccCCHHHHHHHHHHhhcCHHHccCCCCCchHHHHcC
Confidence              122346789999999999999999     8898874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=4.9e-39  Score=338.01  Aligned_cols=259  Identities=17%  Similarity=0.264  Sum_probs=207.4

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|...+.||+|+||.||+|.. .+|..||||.+... ........++|.+|++++++++||||+++++++..++..++||
T Consensus         3 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~-~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08229           3 NFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIF-DLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL   81 (267)
T ss_pred             hhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeeh-hhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEE
Confidence            567778999999999999996 58999999988422 1122233468999999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcC--CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          635 EYAPKGTLFDVLHGC--LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       635 ey~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||+++|+|.++++..  ....++|.++..++.|+++|++|||   +.+++|+||||+||+++.++.++++|||++.....
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~  158 (267)
T cd08229          82 ELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             EecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEECcchhhhcccc
Confidence            999999999998742  2346899999999999999999999   78999999999999999999999999999876543


Q ss_pred             CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc-HHHHHHHhhccccccccccccccc
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE-LAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      ...  ......|+..|+|||+..+..++.++|||||||++|||++|..||.+... ...+.....       ....+...
T Consensus       159 ~~~--~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~-------~~~~~~~~  229 (267)
T cd08229         159 KTT--AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIE-------QCDYPPLP  229 (267)
T ss_pred             CCc--ccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccchHHHHhhhhh-------cCCCCCCC
Confidence            221  12345789999999999888899999999999999999999999964332 111111110       11011110


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                           ......++.+++.+||+.||++||||.+|++.++++
T Consensus       230 -----~~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~  265 (267)
T cd08229         230 -----SDHYSEELRQLVNMCINPDPEKRPDITYVYDVAKRM  265 (267)
T ss_pred             -----cccccHHHHHHHHHhcCCCcccCCCHHHHHHHHhhh
Confidence                 113455788999999999999999999999998864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=3.4e-39  Score=344.15  Aligned_cols=260  Identities=21%  Similarity=0.240  Sum_probs=204.8

Q ss_pred             HHHhcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEe
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVL  625 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~  625 (833)
                      ..++|+..+.||+|+||.||+|...      ....||+|.+.....   .....++.+|+++++++ +||||++++++|.
T Consensus        10 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~---~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~   86 (293)
T cd05053          10 PRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDAT---EKDLSDLVSEMEMMKMIGKHKNIINLLGVCT   86 (293)
T ss_pred             CHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCC---HHHHHHHHHHHHHHHhhcCCCCeeeEEEEEc
Confidence            3456788899999999999999863      236899999842211   12245689999999999 7999999999999


Q ss_pred             cCCceEEEEeeCCCCChhhhhhcC--------------CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccce
Q 003296          626 ASDSAYLFYEYAPKGTLFDVLHGC--------------LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNI  691 (833)
Q Consensus       626 ~~~~~~lv~ey~~~g~L~~~l~~~--------------~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Ni  691 (833)
                      .++..++||||+++|+|.++++..              ....++|..++.++.|++.||+|||   ..+|+||||||+||
T Consensus        87 ~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivH~dlkp~Ni  163 (293)
T cd05053          87 QEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLA---SKKCIHRDLAARNV  163 (293)
T ss_pred             CCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH---HCCccccccceeeE
Confidence            999999999999999999999642              1346899999999999999999999   78999999999999


Q ss_pred             eeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHH
Q 003296          692 FLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAK  770 (833)
Q Consensus       692 ll~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~  770 (833)
                      ++++++.+|++|||+++...............++..|+|||+..+..++.++|||||||++|||++ |..||....... 
T Consensus       164 l~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~-  242 (293)
T cd05053         164 LVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEE-  242 (293)
T ss_pred             EEcCCCeEEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCCHHH-
Confidence            999999999999999987643322111222345678999999988889999999999999999998 999987543211 


Q ss_pred             HHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          771 WVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ... .........      ..      ......+.+++.+||+.||++||||.|++++|+++
T Consensus       243 ~~~-~~~~~~~~~------~~------~~~~~~~~~li~~~l~~~p~~Rps~~eil~~l~~~  291 (293)
T cd05053         243 LFK-LLKEGYRME------KP------QNCTQELYHLMRDCWHEVPSQRPTFKQLVEDLDRM  291 (293)
T ss_pred             HHH-HHHcCCcCC------CC------CCCCHHHHHHHHHHcccCcccCcCHHHHHHHHHHh
Confidence            111 111111000      00      12234678999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=8.4e-39  Score=336.16  Aligned_cols=261  Identities=18%  Similarity=0.292  Sum_probs=210.2

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||.||+|... +|+.||+|.++.. ........+.+.+|++++++++|+||+++++++...+..++|
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv   80 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIF-EMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIV   80 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecc-cccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence            46788899999999999999986 8999999988422 122223356899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCC--CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          634 YEYAPKGTLFDVLHGCL--ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      |||+++|+|.+++....  ...+++.++..++.|+++|++|||   +.+|+||||||+||+++.++.++++|||+++...
T Consensus        81 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~  157 (267)
T cd08224          81 LELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMH---SKRIMHRDIKPANVFITATGVVKLGDLGLGRFFS  157 (267)
T ss_pred             EecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHH---hCCEecCCcChhhEEECCCCcEEEeccceeeecc
Confidence            99999999999986432  345899999999999999999999   7899999999999999999999999999988654


Q ss_pred             CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCc-cHHHHHHHhhcccccccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGN-ELAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                      ....  ......|++.|+|||++.+..++.++|||||||++|||++|+.||.... .......... . ..        .
T Consensus       158 ~~~~--~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~-~-~~--------~  225 (267)
T cd08224         158 SKTT--AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIE-K-CD--------Y  225 (267)
T ss_pred             CCCc--ccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCCccHHHHHhhhh-c-CC--------C
Confidence            3221  1234578999999999988889999999999999999999999996432 2222211111 0 00        0


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR  833 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r  833 (833)
                      ...  ........+.+++.+||..+|++|||+.+|+++|++++
T Consensus       226 ~~~--~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~~~~~  266 (267)
T cd08224         226 PPL--PADHYSEELRDLVSRCINPDPEKRPDISYVLQVAKEMH  266 (267)
T ss_pred             CCC--ChhhcCHHHHHHHHHHcCCCcccCCCHHHHHHHHHHhc
Confidence            000  01133457789999999999999999999999999874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=9.3e-39  Score=334.42  Aligned_cols=253  Identities=22%  Similarity=0.320  Sum_probs=203.7

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      ++|+..+.||+|+||.||+|...++..||+|.+....     ...+.|.+|++++++++||||+++++++. ++..++||
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~-----~~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~   79 (260)
T cd05070           6 ESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGT-----MSPESFLEEAQIMKKLRHDKLVQLYAVVS-EEPIYIVT   79 (260)
T ss_pred             HHhhhhheeccccCceEEEEEecCCceeEEEEecCCC-----CCHHHHHHHHHHHHhcCCCceEEEEeEEC-CCCcEEEE
Confidence            4677889999999999999998888899999984221     13467999999999999999999999875 56689999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.+++++.....+++.++..++.|++.||+|||   +.+|+||||||+||++++++.+|++|||++.......
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~  156 (260)
T cd05070          80 EYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIE---RMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNE  156 (260)
T ss_pred             EecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCccceEEEeCCceEEeCCceeeeeccCcc
Confidence            9999999999998654556899999999999999999999   7889999999999999999999999999998764332


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      .. ......++..|+|||+..+..++.++|||||||++|||++ |+.||.+.... +........ ...      ..   
T Consensus       157 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~-~~~~~~~~~-~~~------~~---  224 (260)
T cd05070         157 YT-ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNR-EVLEQVERG-YRM------PC---  224 (260)
T ss_pred             cc-cccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCHH-HHHHHHHcC-CCC------CC---
Confidence            11 1122345678999999988889999999999999999999 88999754322 111111110 000      00   


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                         ....+..+.+++.+|++.+|++|||++++.+.|++
T Consensus       225 ---~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  259 (260)
T cd05070         225 ---PQDCPISLHELMLQCWKKDPEERPTFEYLQSFLED  259 (260)
T ss_pred             ---CCcCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence               11234568899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=4e-39  Score=340.47  Aligned_cols=259  Identities=19%  Similarity=0.249  Sum_probs=202.6

Q ss_pred             HHHhcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA  626 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~  626 (833)
                      ..+.|...+.||+|+||.||+|...      .+..||+|.+.....   ......|.+|+.++++++||||+++++++.+
T Consensus         4 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~   80 (277)
T cd05036           4 PRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCS---EQDESDFLMEALIMSKFNHQNIVRLIGVSFE   80 (277)
T ss_pred             CHHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCC---HHHHHHHHHHHHHHHhCCCCCEeeEEEEEcc
Confidence            3567888899999999999999974      467899998842211   1224579999999999999999999999999


Q ss_pred             CCceEEEEeeCCCCChhhhhhcCCC-----CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC---C
Q 003296          627 SDSAYLFYEYAPKGTLFDVLHGCLE-----NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK---E  698 (833)
Q Consensus       627 ~~~~~lv~ey~~~g~L~~~l~~~~~-----~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~---~  698 (833)
                      .+..++||||+++|+|.++++....     ..++|.++..++.|++.|++|||   ..+++||||||+||+++.++   .
T Consensus        81 ~~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~nil~~~~~~~~~  157 (277)
T cd05036          81 RLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLE---ENHFIHRDIAARNCLLTCKGPGRV  157 (277)
T ss_pred             CCCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccchheEEEeccCCCcc
Confidence            9999999999999999999975421     25899999999999999999999   78899999999999998654   5


Q ss_pred             ceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhc
Q 003296          699 PQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSA  777 (833)
Q Consensus       699 ~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~  777 (833)
                      +|++|||+++...............++..|||||++.+..++.++|||||||++|||++ |+.||...... ........
T Consensus       158 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~~-~~~~~~~~  236 (277)
T cd05036         158 AKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQ-EVMEFVTG  236 (277)
T ss_pred             eEeccCccccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHH-HHHHHHHc
Confidence            89999999987632221111122334578999999988889999999999999999997 99999754321 11111111


Q ss_pred             ccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          778 QQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                      . ...      ..      ....+.++.+++.+|++.+|++||++.||+++|++
T Consensus       237 ~-~~~------~~------~~~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~l~~  277 (277)
T cd05036         237 G-GRL------DP------PKGCPGPVYRIMTDCWQHTPEDRPNFATILERIQY  277 (277)
T ss_pred             C-CcC------CC------CCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHhhC
Confidence            1 100      00      01223567899999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=4.2e-39  Score=342.79  Aligned_cols=256  Identities=19%  Similarity=0.220  Sum_probs=201.0

Q ss_pred             cCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          557 ANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      |...+.||+|+||.||+|+..      ....+|+|.+.....   ....+++.+|++++++++|||||+++++|..++..
T Consensus         2 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   78 (290)
T cd05045           2 LVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENAS---SSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPL   78 (290)
T ss_pred             ccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCC---HHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCc
Confidence            566789999999999999852      235788888842211   12246799999999999999999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCC----------------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCc
Q 003296          631 YLFYEYAPKGTLFDVLHGCL----------------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLST  688 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~----------------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~  688 (833)
                      ++||||+++|+|.+++....                      ...++|.+++.++.|++.||+|||   ..+|+||||||
T Consensus        79 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH---~~~ivH~dikp  155 (290)
T cd05045          79 LLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLA---EMKLVHRDLAA  155 (290)
T ss_pred             EEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHH---HCCeehhhhhh
Confidence            99999999999999986421                      135889999999999999999999   78999999999


Q ss_pred             cceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCcc
Q 003296          689 RNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNE  767 (833)
Q Consensus       689 ~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~  767 (833)
                      +||++++++.+|++|||+++...............++..|+|||++.+..++.++|||||||++|||+| |+.||.+...
T Consensus       156 ~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~  235 (290)
T cd05045         156 RNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAP  235 (290)
T ss_pred             heEEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCCH
Confidence            999999999999999999986533222111223456778999999888889999999999999999999 9999965432


Q ss_pred             HHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          768 LAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      . .+... ......      ....      ...+.++.+++.+||+.+|++||+++|+++.|+++
T Consensus       236 ~-~~~~~-~~~~~~------~~~~------~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~  286 (290)
T cd05045         236 E-RLFNL-LKTGYR------MERP------ENCSEEMYNLMLTCWKQEPDKRPTFADISKELEKM  286 (290)
T ss_pred             H-HHHHH-HhCCCC------CCCC------CCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHHH
Confidence            2 21111 111000      0000      12234688999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=6.5e-39  Score=334.73  Aligned_cols=250  Identities=21%  Similarity=0.254  Sum_probs=201.1

Q ss_pred             hcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      +|...+.||+|+||.||+|...++..+|+|.+....     .....|.+|++++++++||||+++++++...+..++|||
T Consensus         5 ~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~-----~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   79 (256)
T cd05059           5 ELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGA-----MSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTE   79 (256)
T ss_pred             HcchhhhhccCCCceEEEeEecCCccEEEEEeccCC-----CCHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEe
Confidence            567788999999999999998878899999984221     234578999999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      |+++|+|.++++... ..++|..+..++.|++.|++|||   +.+|+||||||+||++++++.+|++|||+++.......
T Consensus        80 ~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~  155 (256)
T cd05059          80 YMANGCLLNYLRERK-GKLGTEWLLDMCSDVCEAMEYLE---SNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQY  155 (256)
T ss_pred             cCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHH---HCCcccccccHhhEEECCCCcEEECCcccceecccccc
Confidence            999999999997532 36899999999999999999999   78899999999999999999999999999986542221


Q ss_pred             CCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCCc
Q 003296          716 TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS  794 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (833)
                       .......++..|+|||++.+..++.++|||||||++|||++ |+.||........+ .... ...      .....   
T Consensus       156 -~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~-~~~~-~~~------~~~~~---  223 (256)
T cd05059         156 -TSSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNSEVV-ESVS-AGY------RLYRP---  223 (256)
T ss_pred             -cccCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCHHHHH-HHHH-cCC------cCCCC---
Confidence             11112234567999999998889999999999999999999 89999744332211 1111 100      00000   


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Q 003296          795 LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML  829 (833)
Q Consensus       795 ~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L  829 (833)
                         ...+.++.+++.+||..+|++||||.|+++.|
T Consensus       224 ---~~~~~~~~~li~~cl~~~p~~Rpt~~~~l~~l  255 (256)
T cd05059         224 ---KLAPTEVYTIMYSCWHEKPEDRPAFKKLLSQL  255 (256)
T ss_pred             ---CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence               12345788999999999999999999999987

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=3.5e-40  Score=351.04  Aligned_cols=250  Identities=22%  Similarity=0.303  Sum_probs=203.7

Q ss_pred             CCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc--eEEEE
Q 003296          558 NPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS--AYLFY  634 (833)
Q Consensus       558 ~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~--~~lv~  634 (833)
                      +...+||+|+|-+||||.+. +|..||--.++-.+........++|..|+++|+.|+|||||++|.+|.+...  ..+|+
T Consensus        43 k~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iT  122 (632)
T KOG0584|consen   43 KFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFIT  122 (632)
T ss_pred             ehhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeee
Confidence            34578999999999999984 7899986655322222333445889999999999999999999999998655  78899


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC-CCCCceeccceeeeeeCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK-SLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~-~~~~~ki~dfgl~~~~~~~  713 (833)
                      |.|..|+|+.|.++  .+.++....+.|++||.+||.|||+. .+||||||||.+||+|+ ..|.+||+|.|+|......
T Consensus       123 EL~TSGtLr~Y~kk--~~~vn~kaik~W~RQILkGL~yLHs~-~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s  199 (632)
T KOG0584|consen  123 ELFTSGTLREYRKK--HRRVNIKAIKSWCRQILKGLVYLHSQ-DPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKS  199 (632)
T ss_pred             ecccCCcHHHHHHH--hccCCHHHHHHHHHHHHHHhhhhhcC-CCCccccccccceEEEcCCcCceeecchhHHHHhhcc
Confidence            99999999999987  34578889999999999999999986 68999999999999997 5589999999999987543


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      ..    ..++|||.|||||++. ..|++.+||||||+.++||+|+..||.+....++........ -+... +       
T Consensus       200 ~a----ksvIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~AQIYKKV~SG-iKP~s-l-------  265 (632)
T KOG0584|consen  200 HA----KSVIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTSEYPYSECTNPAQIYKKVTSG-IKPAA-L-------  265 (632)
T ss_pred             cc----ceeccCccccChHHHh-hhcchhhhhhhhhHHHHHHHhccCChhhhCCHHHHHHHHHcC-CCHHH-h-------
Confidence            32    3489999999999876 789999999999999999999999999877766654433221 11100 0       


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                         ..-..+++.++|.+|+.. .++|||+.|++++
T Consensus       266 ---~kV~dPevr~fIekCl~~-~~~R~sa~eLL~d  296 (632)
T KOG0584|consen  266 ---SKVKDPEVREFIEKCLAT-KSERLSAKELLKD  296 (632)
T ss_pred             ---hccCCHHHHHHHHHHhcC-chhccCHHHHhhC
Confidence               011134788999999999 9999999999874

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-41  Score=352.02  Aligned_cols=347  Identities=21%  Similarity=0.244  Sum_probs=240.9

Q ss_pred             CCEEECCCCCCCCc--ccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccC
Q 003296           10 LKLLNFSKNELVSL--PTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSG   87 (833)
Q Consensus        10 L~~L~ls~N~l~~i--~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~   87 (833)
                      -++||+|+|.|+.+  ..|.++++|+.+.|.+|.++.|+ .......+|+.|+|.+|.|+.+..+.+..++.|+.||||.
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP-~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIP-RFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcc-cccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence            35688888888886  24788888888888888888543 3333445688888888888888888888888888888888


Q ss_pred             CcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCC
Q 003296           88 NAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVP  167 (833)
Q Consensus        88 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p  167 (833)
                      |.|+.+.-.+|..=.++++|+|++|+|+.+-.+.|.++.+|.+|-|+.|+|+...+..|.++++|+.|+|..|++.-..-
T Consensus       159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~  238 (873)
T KOG4194|consen  159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG  238 (873)
T ss_pred             chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence            88887766778877888888888888888888888888888888888888888888888888888888888888753222


Q ss_pred             hhh--hhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCC
Q 003296          168 GGI--TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKL  245 (833)
Q Consensus       168 ~~~--~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L  245 (833)
                      ..|  +.+|+.|.|..|.+.......|..+.++++|+|+.|+++..-                       .+.+-++++|
T Consensus       239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn-----------------------~g~lfgLt~L  295 (873)
T KOG4194|consen  239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN-----------------------EGWLFGLTSL  295 (873)
T ss_pred             hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh-----------------------cccccccchh
Confidence            222  445888888889888888888888899999999999887432                       2233345555


Q ss_pred             CEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCC
Q 003296          246 TYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWN  325 (833)
Q Consensus       246 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  325 (833)
                      +.|+||+|.|..+.++++.-+++|++|+|++|+|+...+..|..+..|+.|+|++|+++..-...|..+++|+.|||++|
T Consensus       296 ~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N  375 (873)
T KOG4194|consen  296 EQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN  375 (873)
T ss_pred             hhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCcccCcc---ccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCccCC
Q 003296          326 SLSGSIPS---FLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIP  380 (833)
Q Consensus       326 ~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  380 (833)
                      .+++.+.+   .|.++++|+.|+|.+|++..+...+|.++.+|++|||.+|.|...-|
T Consensus       376 ~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~  433 (873)
T KOG4194|consen  376 ELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQP  433 (873)
T ss_pred             eEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecc
Confidence            55554433   34555555555555555554444555555555555555555544333

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=2.7e-39  Score=354.82  Aligned_cols=264  Identities=19%  Similarity=0.191  Sum_probs=201.5

Q ss_pred             HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC--
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD--  628 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~--  628 (833)
                      ...+.|...+.||+|+||.||+|.. .+|..||||++....  ......+.+.+|+.++++++||||+++++++...+  
T Consensus        18 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~   95 (359)
T cd07876          18 TVLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPF--QNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSL   95 (359)
T ss_pred             hhhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccc--cchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCc
Confidence            3456788999999999999999997 478999999984221  12233567889999999999999999999987543  


Q ss_pred             ----ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccc
Q 003296          629 ----SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDI  704 (833)
Q Consensus       629 ----~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~df  704 (833)
                          ..|+||||+++ +|.+.++.    .+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.+||+||
T Consensus        96 ~~~~~~~lv~e~~~~-~l~~~~~~----~~~~~~~~~~~~qi~~~L~~LH---~~~ivHrDlkp~NIl~~~~~~~kl~Df  167 (359)
T cd07876          96 EEFQDVYLVMELMDA-NLCQVIHM----ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDF  167 (359)
T ss_pred             cccceeEEEEeCCCc-CHHHHHhc----cCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEEecC
Confidence                47999999975 67776653    4788899999999999999999   789999999999999999999999999


Q ss_pred             eeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccc
Q 003296          705 ELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDH  784 (833)
Q Consensus       705 gl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~  784 (833)
                      |+++......   ......||+.|+|||++.+..++.++||||+||++|||++|+.||.+......|.............
T Consensus       168 g~a~~~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~  244 (359)
T cd07876         168 GLARTACTNF---MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTPSAE  244 (359)
T ss_pred             CCccccccCc---cCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCcHH
Confidence            9997643222   2244678999999999999899999999999999999999999998665544432211111000000


Q ss_pred             c-----------cc--cccc--------------CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          785 I-----------LD--FNVS--------------RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       785 ~-----------~~--~~~~--------------~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .           ..  +...              ...........++.+++.+||+.||++|||+.|+++|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  315 (359)
T cd07876         245 FMNRLQPTVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALRH  315 (359)
T ss_pred             HHHHHHHHHHHHHhhCCCCCCcchhhhccccccccccccccccchhHHHHHHHHhccCcccCCCHHHHhcC
Confidence            0           00  0000              0000001123567899999999999999999999986

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=6.9e-39  Score=337.82  Aligned_cols=256  Identities=18%  Similarity=0.207  Sum_probs=197.3

Q ss_pred             CCccccccCcccEEEEEEcCC-Cc--eEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC------C
Q 003296          558 NPLNVELKTRFSTYYKAVMPS-GM--SYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS------D  628 (833)
Q Consensus       558 ~~~~~ig~g~~g~vy~~~~~~-~~--~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~------~  628 (833)
                      ...+.||+|+||.||+|+..+ +.  .||||.++...  ......+.|.+|++++++++||||++++++|...      .
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   79 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAI--CTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYP   79 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCc--CCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCC
Confidence            356789999999999999753 33  68999884321  1122356799999999999999999999988542      2


Q ss_pred             ceEEEEeeCCCCChhhhhhcC----CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccc
Q 003296          629 SAYLFYEYAPKGTLFDVLHGC----LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDI  704 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~----~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~df  704 (833)
                      ..++||||+++|+|.+++...    ....++|.....++.|++.||+|||   ..+|+||||||+||++++++.+|++||
T Consensus        80 ~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Df  156 (272)
T cd05075          80 SPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLS---SKSFIHRDLAARNCMLNENMNVCVADF  156 (272)
T ss_pred             CcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHH---HCCeeccccchhheEEcCCCCEEECCC
Confidence            478999999999999987422    1235899999999999999999999   789999999999999999999999999


Q ss_pred             eeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccccc
Q 003296          705 ELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLD  783 (833)
Q Consensus       705 gl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~  783 (833)
                      |+++...............+++.|+|||+..+..++.++|||||||++|||++ |+.||...... +.... ........
T Consensus       157 g~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~-~~~~~-~~~~~~~~  234 (272)
T cd05075         157 GLSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENS-EIYDY-LRQGNRLK  234 (272)
T ss_pred             CcccccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCHH-HHHHH-HHcCCCCC
Confidence            99987643321111123356778999999988889999999999999999999 88998653322 21111 11111100


Q ss_pred             ccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          784 HILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       784 ~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                              ..    ...+..+.+++.+||+.||++|||+.|++++|+++
T Consensus       235 --------~~----~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~~~  271 (272)
T cd05075         235 --------QP----PDCLDGLYSLMSSCWLLNPKDRPSFETLRCELEKA  271 (272)
T ss_pred             --------CC----CCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence                    00    12234678999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=1.4e-39  Score=364.45  Aligned_cols=260  Identities=16%  Similarity=0.159  Sum_probs=194.2

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC-----
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS-----  627 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~-----  627 (833)
                      ...|...+.||+|+||.||+|.. .+++.||||++...        .....+|+.+|++++|||||++++++...     
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~--------~~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~  136 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQD--------PQYKNRELLIMKNLNHINIIFLKDYYYTECFKKN  136 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecC--------cchHHHHHHHHHhcCCCCCcceeeeEeecccccC
Confidence            34688889999999999999997 47899999998321        13356799999999999999999987542     


Q ss_pred             ---CceEEEEeeCCCCChhhhhhcC--CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC-Ccee
Q 003296          628 ---DSAYLFYEYAPKGTLFDVLHGC--LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK-EPQI  701 (833)
Q Consensus       628 ---~~~~lv~ey~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~-~~ki  701 (833)
                         ...++||||+++ ++.+++...  ....+++..+..++.|++.||+|||   +.+|+||||||+|||++.++ .+||
T Consensus       137 ~~~~~l~lvmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH---~~~IiHrDLKp~NILl~~~~~~vkL  212 (440)
T PTZ00036        137 EKNIFLNVVMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIH---SKFICHRDLKPQNLLIDPNTHTLKL  212 (440)
T ss_pred             CCceEEEEEEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCcCHHHEEEcCCCCceee
Confidence               246799999985 787776532  2346899999999999999999999   78999999999999999664 7999


Q ss_pred             ccceeeeeeCCCCCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc
Q 003296          702 GDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD  780 (833)
Q Consensus       702 ~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~  780 (833)
                      +|||+|+.......   .....||+.|||||++.+. .|+.++|||||||++|||++|++||.+..............+.
T Consensus       213 ~DFGla~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~~~  289 (440)
T PTZ00036        213 CDFGSAKNLLAGQR---SVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGT  289 (440)
T ss_pred             eccccchhccCCCC---cccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCC
Confidence            99999987643322   2346789999999988754 6899999999999999999999999865543322211111000


Q ss_pred             cccc---cccc-----cccCC-chh-----HHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          781 KLDH---ILDF-----NVSRT-SLA-----VRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       781 ~~~~---~~~~-----~~~~~-~~~-----~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ...+   ...+     .++.. ...     +...+.++.+++.+||+.||++|||+.|+++|
T Consensus       290 p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~h  351 (440)
T PTZ00036        290 PTEDQLKEMNPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALAD  351 (440)
T ss_pred             CCHHHHHHhchhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhCC
Confidence            0000   0000     00000 000     01124578899999999999999999999865

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=5.9e-40  Score=360.00  Aligned_cols=255  Identities=15%  Similarity=0.203  Sum_probs=199.3

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|+..+.||+|+||.||+|... +|+.||||++.. .........+.+.+|++++.+++|||||++++++.+++..|+||
T Consensus         2 ~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~-~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~   80 (360)
T cd05627           2 DFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRK-ADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIM   80 (360)
T ss_pred             CceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEH-HHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            5778899999999999999974 789999999942 22222334567889999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      |||++|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+|||++.++.+|++|||+++......
T Consensus        81 E~~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~~L~~lH---~~givHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~  155 (360)
T cd05627          81 EFLPGGDMMTLLMK--KDTLSEEATQFYIAETVLAIDAIH---QLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAH  155 (360)
T ss_pred             eCCCCccHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEccCCCHHHEEECCCCCEEEeeccCCccccccc
Confidence            99999999999975  346899999999999999999999   8899999999999999999999999999987543211


Q ss_pred             C---------------------------------CCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCc
Q 003296          715 S---------------------------------TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTA  761 (833)
Q Consensus       715 ~---------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p  761 (833)
                      .                                 .......+||+.|||||++.+..++.++|||||||++|||+||+.|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~P  235 (360)
T cd05627         156 RTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPP  235 (360)
T ss_pred             ccccccccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCCC
Confidence            0                                 0011245799999999999998999999999999999999999999


Q ss_pred             ccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCC---HHHHHHH
Q 003296          762 VNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPK---MKSVLRM  828 (833)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps---~~evl~~  828 (833)
                      |.+......+.. .......   .   .++..    .....++.+++.+|+. ||.+|++   +.|+++|
T Consensus       236 f~~~~~~~~~~~-i~~~~~~---~---~~p~~----~~~s~~~~~li~~l~~-~p~~R~~~~~~~ei~~h  293 (360)
T cd05627         236 FCSETPQETYRK-VMNWKET---L---VFPPE----VPISEKAKDLILRFCT-DSENRIGSNGVEEIKSH  293 (360)
T ss_pred             CCCCCHHHHHHH-HHcCCCc---e---ecCCC----CCCCHHHHHHHHHhcc-ChhhcCCCCCHHHHhcC
Confidence            976543322211 1110000   0   00100    0123466788888764 9999985   6777765

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=1.8e-39  Score=375.37  Aligned_cols=260  Identities=18%  Similarity=0.181  Sum_probs=201.3

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      .|+..+.||+|+||.||+|+.. +|+.||||++... ........++|.+|++++++++|||||++++++.+++..|+||
T Consensus         3 rYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~-l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVM   81 (932)
T PRK13184          3 RYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIRED-LSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTM   81 (932)
T ss_pred             CeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcc-cccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEE
Confidence            5777899999999999999974 6899999999422 1111223467999999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCC---------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccce
Q 003296          635 EYAPKGTLFDVLHGCL---------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIE  705 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~---------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfg  705 (833)
                      ||+++|+|.++++...         ....++..+..++.|+++||+|||   +.+|+||||||+||+++.++.+|++|||
T Consensus        82 EY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLH---s~GIIHRDLKPeNILLd~dg~vKLiDFG  158 (932)
T PRK13184         82 PYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVH---SKGVLHRDLKPDNILLGLFGEVVILDWG  158 (932)
T ss_pred             EcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHH---HCCccccCCchheEEEcCCCCEEEEecC
Confidence            9999999999986421         124677888999999999999999   7899999999999999999999999999


Q ss_pred             eeeeeCCCCC----------------CCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHH
Q 003296          706 LCKVIDPSKS----------------TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELA  769 (833)
Q Consensus       706 l~~~~~~~~~----------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~  769 (833)
                      +++.......                .......+||+.|||||++.+..++.++|||||||++|||+||+.||.......
T Consensus       159 LAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~k  238 (932)
T PRK13184        159 AAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGRK  238 (932)
T ss_pred             cceecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchhh
Confidence            9987621110                001123579999999999999899999999999999999999999997533211


Q ss_pred             HHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCC-CHHHHHHHHHh
Q 003296          770 KWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARP-KMKSVLRMLLN  831 (833)
Q Consensus       770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rp-s~~evl~~L~~  831 (833)
                      .....         .+.++...   ......+..+.+++.+|++.||++|| +++++.+.|+.
T Consensus       239 i~~~~---------~i~~P~~~---~p~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~~Le~  289 (932)
T PRK13184        239 ISYRD---------VILSPIEV---APYREIPPFLSQIAMKALAVDPAERYSSVQELKQDLEP  289 (932)
T ss_pred             hhhhh---------hccChhhc---cccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence            11000         00000000   00113345678899999999999995 66777776654

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=7.4e-39  Score=343.25  Aligned_cols=259  Identities=19%  Similarity=0.249  Sum_probs=205.1

Q ss_pred             HHhcCCccccccCcccEEEEEEc--------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM--------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYV  624 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~--------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~  624 (833)
                      ..+|...+.||+|+||.||+|..        .++..||+|.+....   .....+++.+|+.+++++ +||||+++++++
T Consensus        14 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~---~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~   90 (304)
T cd05101          14 RDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDA---TEKDLSDLVSEMEMMKMIGKHKNIINLLGAC   90 (304)
T ss_pred             HHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeeccccc---chHHHHHHHHHHHHHHhhccCCCchheeEEE
Confidence            45677889999999999999973        134679999984221   122346799999999999 899999999999


Q ss_pred             ecCCceEEEEeeCCCCChhhhhhcCC--------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccc
Q 003296          625 LASDSAYLFYEYAPKGTLFDVLHGCL--------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRN  690 (833)
Q Consensus       625 ~~~~~~~lv~ey~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~N  690 (833)
                      ..++..++||||+++|+|.+++....              ...++|.++..++.|+++||+|||   +.+|+||||||+|
T Consensus        91 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~givH~dlkp~N  167 (304)
T cd05101          91 TQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLA---SQKCIHRDLAARN  167 (304)
T ss_pred             ecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHH---HCCeeecccccce
Confidence            99999999999999999999997532              135789999999999999999999   7899999999999


Q ss_pred             eeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHH
Q 003296          691 IFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELA  769 (833)
Q Consensus       691 ill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~  769 (833)
                      |++++++.+|++|||+++...............+++.|+|||++.+..++.++|||||||++|||++ |..||.+. ...
T Consensus       168 ili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~-~~~  246 (304)
T cd05101         168 VLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI-PVE  246 (304)
T ss_pred             EEEcCCCcEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccC-CHH
Confidence            9999999999999999987643322222233456788999999988889999999999999999998 78888643 233


Q ss_pred             HHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          770 KWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ++..... ......      .      ....+.++.+++.+||+.+|++||||.||++.|+++
T Consensus       247 ~~~~~~~-~~~~~~------~------~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~  296 (304)
T cd05101         247 ELFKLLK-EGHRMD------K------PANCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDRI  296 (304)
T ss_pred             HHHHHHH-cCCcCC------C------CCCCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHH
Confidence            3222211 111100      0      012345678899999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=6.9e-39  Score=339.17  Aligned_cols=256  Identities=21%  Similarity=0.256  Sum_probs=202.5

Q ss_pred             HhcCCccccccCcccEEEEEEc------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC
Q 003296          555 AVANPLNVELKTRFSTYYKAVM------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~  628 (833)
                      .++.....+|+|+||.||+|..      .++..+|+|.+....    ....+.|.+|++++++++||||+++++++...+
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   80 (280)
T cd05092           5 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEAS----ESARQDFQREAELLTVLQHQHIVRFYGVCTEGR   80 (280)
T ss_pred             HhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCC----HHHHHHHHHHHHHHhcCCCCCCceEEEEEecCC
Confidence            4566788999999999999963      246789999884221    123468999999999999999999999999999


Q ss_pred             ceEEEEeeCCCCChhhhhhcCCC-------------CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCLE-------------NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS  695 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~~-------------~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~  695 (833)
                      ..++||||+++|+|.++++....             ..++|.+++.++.|++.|++|||   +.+|+||||||+||++++
T Consensus        81 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~~~i~H~dlkp~nil~~~  157 (280)
T cd05092          81 PLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLA---SLHFVHRDLATRNCLVGQ  157 (280)
T ss_pred             ceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHH---HCCeecccccHhhEEEcC
Confidence            99999999999999999975321             24899999999999999999999   789999999999999999


Q ss_pred             CCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHH
Q 003296          696 LKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLR  774 (833)
Q Consensus       696 ~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~  774 (833)
                      ++.+|++|||+++...............+++.|+|||+..+..++.++|||||||++|||++ |+.||........ ...
T Consensus       158 ~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~-~~~  236 (280)
T cd05092         158 GLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTEA-IEC  236 (280)
T ss_pred             CCCEEECCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCHHHH-HHH
Confidence            99999999999986543221111123446788999999998889999999999999999998 8999864432211 111


Q ss_pred             hhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          775 NSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                      .. .....      ..      ....+..+.+++.+||+.||++||+++||.+.|+.
T Consensus       237 ~~-~~~~~------~~------~~~~~~~~~~li~~cl~~~P~~Rp~~~~l~~~l~~  280 (280)
T cd05092         237 IT-QGREL------ER------PRTCPPEVYAIMQGCWQREPQQRMVIKDIHSRLQA  280 (280)
T ss_pred             HH-cCccC------CC------CCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHhC
Confidence            11 10000      00      01223467899999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=4e-39  Score=350.82  Aligned_cols=259  Identities=19%  Similarity=0.251  Sum_probs=200.1

Q ss_pred             HhcCCccccccCcccEEEEEEc------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecC
Q 003296          555 AVANPLNVELKTRFSTYYKAVM------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLAS  627 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~  627 (833)
                      +.|+..+.||+|+||.||+|..      .+++.||||+++....   ....+.+.+|++++.++ +|||||+++++|...
T Consensus         7 ~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~   83 (343)
T cd05103           7 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT---HSEHRALMSELKILIHIGHHLNVVNLLGACTKP   83 (343)
T ss_pred             hHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCC---hHHHHHHHHHHHHHHhccCCccHhhhcceeecC
Confidence            5688899999999999999973      3578999999942211   12245788999999999 689999999988765


Q ss_pred             -CceEEEEeeCCCCChhhhhhcCC--------------------------------------------------------
Q 003296          628 -DSAYLFYEYAPKGTLFDVLHGCL--------------------------------------------------------  650 (833)
Q Consensus       628 -~~~~lv~ey~~~g~L~~~l~~~~--------------------------------------------------------  650 (833)
                       ...++|||||++|+|.++++...                                                        
T Consensus        84 ~~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (343)
T cd05103          84 GGPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEE  163 (343)
T ss_pred             CCceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchh
Confidence             46799999999999999986421                                                        


Q ss_pred             ---------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCcccc
Q 003296          651 ---------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST  721 (833)
Q Consensus       651 ---------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~  721 (833)
                               ...++|.++..++.|+++||+|||   +.+|+||||||+||++++++.+|++|||+++.............
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  240 (343)
T cd05103         164 EEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGD  240 (343)
T ss_pred             hhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCC
Confidence                     123688889999999999999999   78999999999999999999999999999986533221111223


Q ss_pred             ccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHH
Q 003296          722 VAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQ  800 (833)
Q Consensus       722 ~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  800 (833)
                      ..++..|+|||++.+..++.++|||||||++|||++ |..||.......... .........      ..+.      ..
T Consensus       241 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~-~~~~~~~~~------~~~~------~~  307 (343)
T cd05103         241 ARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFC-RRLKEGTRM------RAPD------YT  307 (343)
T ss_pred             CCCCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccccHHHH-HHHhccCCC------CCCC------CC
Confidence            446778999999988889999999999999999997 999986432211111 111111100      0000      11


Q ss_pred             HHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          801 MLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       801 ~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ..++.+++.+||+.||++|||+.||+++|+.+
T Consensus       308 ~~~~~~~~~~cl~~~p~~Rps~~eil~~l~~~  339 (343)
T cd05103         308 TPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL  339 (343)
T ss_pred             CHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence            24678999999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=6.6e-40  Score=309.89  Aligned_cols=261  Identities=19%  Similarity=0.244  Sum_probs=205.4

Q ss_pred             HhcCCccccccCcccEEEEEE-cCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC-----
Q 003296          555 AVANPLNVELKTRFSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD-----  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~-----  628 (833)
                      +.|.+.+.+|+|+|+.||.++ ..++..||+|++.-    ....+.+...+|++..++++||||+++++++..+.     
T Consensus        21 ~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c----~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~   96 (302)
T KOG2345|consen   21 KRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILC----HSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKH   96 (302)
T ss_pred             ceEEEeeeecCCCceeeeeecccCcccchhhheeec----cchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCce
Confidence            457888999999999999999 57899999999942    22345678999999999999999999999987544     


Q ss_pred             ceEEEEeeCCCCChhhhhhcCC--CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceecccee
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCL--ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIEL  706 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl  706 (833)
                      +.||++.|...|+|.+.+....  +..+++.+.+.|+.++++||.+||+. .++..||||||.|||+.+++.+++.|||.
T Consensus        97 ~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~-~~~yAH~DiKP~NILls~~~~~vl~D~GS  175 (302)
T KOG2345|consen   97 EAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEK-EPPYAHRDIKPANILLSDSGLPVLMDLGS  175 (302)
T ss_pred             eEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhcc-CCcccccCCCcceeEecCCCceEEEeccC
Confidence            4999999999999999998543  34799999999999999999999965 35799999999999999999999999998


Q ss_pred             eeeeCCCCCC-------CccccccccccccccccccC---CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhh
Q 003296          707 CKVIDPSKST-------GSLSTVAGSVGYIPPEYAYT---MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNS  776 (833)
Q Consensus       707 ~~~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~  776 (833)
                      +....-.-..       +.......|..|.|||.+..   ...++++|||||||++|+|+.|..||+..          .
T Consensus       176 ~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~----------~  245 (302)
T KOG2345|consen  176 ATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERI----------Y  245 (302)
T ss_pred             ccccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHH----------h
Confidence            8654311100       01112346889999998864   34689999999999999999999999721          1


Q ss_pred             ccccccc-ccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          777 AQQDKLD-HILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       777 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .+++.+. .+..+.+..+...  ..+..+.+++..|++.||.+||++.|++.+++.+
T Consensus       246 ~~GgSlaLAv~n~q~s~P~~~--~yse~l~~lik~mlqvdP~qRP~i~~ll~~~d~L  300 (302)
T KOG2345|consen  246 QQGGSLALAVQNAQISIPNSS--RYSEALHQLIKSMLQVDPNQRPTIPELLSKLDDL  300 (302)
T ss_pred             hcCCeEEEeeeccccccCCCC--CccHHHHHHHHHHhcCCcccCCCHHHHHHHHHhh
Confidence            1222221 2222233222211  2566888999999999999999999999998753

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=6.4e-39  Score=338.11  Aligned_cols=254  Identities=16%  Similarity=0.271  Sum_probs=202.2

Q ss_pred             HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecC--
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLAS--  627 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~--  627 (833)
                      .++..|+..+.||+|+||.||+|.. .+++.||+|++...     ......+.+|+++++++ +||||++++++|...  
T Consensus         3 ~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~-----~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~   77 (272)
T cd06637           3 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVT-----GDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNP   77 (272)
T ss_pred             ChhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcC-----CccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCC
Confidence            3556778888999999999999997 47899999998422     12346789999999999 699999999998753  


Q ss_pred             ----CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceecc
Q 003296          628 ----DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGD  703 (833)
Q Consensus       628 ----~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~d  703 (833)
                          +..|+||||+++|+|.+++.......++|..+..++.|++.|++|||   +.+|+|||+||+||++++++.+|++|
T Consensus        78 ~~~~~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH---~~~ivh~dl~~~nili~~~~~~~l~D  154 (272)
T cd06637          78 PGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLH---QHKVIHRDIKGQNVLLTENAEVKLVD  154 (272)
T ss_pred             CCCCcEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHEEECCCCCEEEcc
Confidence                45899999999999999998654557899999999999999999999   78899999999999999999999999


Q ss_pred             ceeeeeeCCCCCCCcccccccccccccccccc-----CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcc
Q 003296          704 IELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY-----TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQ  778 (833)
Q Consensus       704 fgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~  778 (833)
                      ||+++.......  ......|++.|+|||++.     ...++.++|||||||++|||++|+.||........+.....  
T Consensus       155 fg~~~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~~~~~~~~~--  230 (272)
T cd06637         155 FGVSAQLDRTVG--RRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPR--  230 (272)
T ss_pred             CCCceecccccc--cCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCHHHHHHHHhc--
Confidence            999986543221  224567999999999886     33588899999999999999999999975443322221110  


Q ss_pred             cccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          779 QDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                       .......+          ...+.++.+++.+||+.||.+|||+.|++++
T Consensus       231 -~~~~~~~~----------~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~  269 (272)
T cd06637         231 -NPAPRLKS----------KKWSKKFQSFIESCLVKNHSQRPTTEQLMKH  269 (272)
T ss_pred             -CCCCCCCC----------CCcCHHHHHHHHHHcCCChhhCCCHHHHhhC
Confidence             00011100          1223467899999999999999999999875

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=7.2e-39  Score=342.17  Aligned_cols=263  Identities=18%  Similarity=0.223  Sum_probs=204.1

Q ss_pred             HHhcCCccccccCcccEEEEEEcCC-----------------CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCC
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMPS-----------------GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSN  616 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~~-----------------~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~n  616 (833)
                      ...|+..+.||+|+||.||+|....                 +..||+|++.....   ....++|.+|++++++++|||
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~---~~~~~~~~~e~~~l~~l~~~~   80 (296)
T cd05051           4 RQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDAS---DNAREDFLKEVKILSRLSDPN   80 (296)
T ss_pred             hhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccC---HHHHHHHHHHHHHHHhcCCCC
Confidence            3567888999999999999998642                 24689999842211   123568999999999999999


Q ss_pred             cccceEEEecCCceEEEEeeCCCCChhhhhhcCC---------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCC
Q 003296          617 VMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCL---------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLS  687 (833)
Q Consensus       617 iv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk  687 (833)
                      |++++++|..++..++||||+++|+|.+++....         ...+++..++.++.|++.||+|||   +.+|+|||||
T Consensus        81 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH---~~~i~H~dlk  157 (296)
T cd05051          81 IARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLE---SLNFVHRDLA  157 (296)
T ss_pred             EeEEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHH---HcCccccccc
Confidence            9999999999999999999999999999997642         125899999999999999999999   7889999999


Q ss_pred             ccceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh--CCCcccCC
Q 003296          688 TRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT--GKTAVNQG  765 (833)
Q Consensus       688 ~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt--g~~p~~~~  765 (833)
                      |+||+++.++.+|++|||+++...............+++.|||||++.+..++.++|||||||++|||++  |..||...
T Consensus       158 p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~  237 (296)
T cd05051         158 TRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHL  237 (296)
T ss_pred             hhceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCc
Confidence            9999999999999999999986543322222234567889999999988889999999999999999998  67788643


Q ss_pred             ccHHHHH--HHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          766 NELAKWV--LRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       766 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                      .....+.  ......... .....        .....+.++.+++.+|++.||++|||+.||++.|++
T Consensus       238 ~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~~L~~  296 (296)
T cd05051         238 TDQQVIENAGHFFRDDGR-QIYLP--------RPPNCPKDIYELMLECWRRDEEDRPTFREIHLFLQR  296 (296)
T ss_pred             ChHHHHHHHHhccccccc-cccCC--------CccCCCHHHHHHHHHHhccChhcCCCHHHHHHHhcC
Confidence            3222111  110000000 00000        011223578899999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=2.6e-39  Score=356.64  Aligned_cols=264  Identities=20%  Similarity=0.219  Sum_probs=200.2

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC-----c
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD-----S  629 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~-----~  629 (833)
                      +|+..+.||+|+||.||+|.. .+|+.||||++....  ......+++.+|+++++.++|||||++++++..++     .
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~   78 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVF--QNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEE   78 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccc--cchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccce
Confidence            367788999999999999997 479999999984221  11223467899999999999999999999998776     7


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                      .|+||||+. ++|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||+++.
T Consensus        79 ~~lv~e~~~-~~l~~~~~~--~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~  152 (372)
T cd07853          79 IYVVTELMQ-SDLHKIIVS--PQPLSSDHVKVFLYQILRGLKYLH---SAGILHRDIKPGNLLVNSNCVLKICDFGLARV  152 (372)
T ss_pred             EEEEeeccc-cCHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChHHEEECCCCCEEeccccceee
Confidence            899999996 588888865  346899999999999999999999   78999999999999999999999999999987


Q ss_pred             eCCCCCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccc-ccccc---
Q 003296          710 IDPSKSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQ-DKLDH---  784 (833)
Q Consensus       710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~-~~~~~---  784 (833)
                      ...... .......||+.|+|||++.+. .++.++||||+||++|||++|+.||.+..............+ .....   
T Consensus       153 ~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~g~~~~~~~~~  231 (372)
T cd07853         153 EEPDES-KHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMRS  231 (372)
T ss_pred             cccCcc-ccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHH
Confidence            643322 122345789999999998764 478999999999999999999999976543322211100000 00000   


Q ss_pred             --------cccccccCCc-----hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          785 --------ILDFNVSRTS-----LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       785 --------~~~~~~~~~~-----~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                              +.......+.     ........++.+++.+|++.||++|||+.|+++|
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  288 (372)
T cd07853         232 ACEGARAHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALAH  288 (372)
T ss_pred             hhHHHHHHHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhcC
Confidence                    0000000000     0001124578899999999999999999999875

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=6.4e-39  Score=342.16  Aligned_cols=262  Identities=18%  Similarity=0.199  Sum_probs=200.2

Q ss_pred             HhcCCccccccCcccEEEEEEcCC---------------CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCccc
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPS---------------GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMT  619 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~---------------~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~  619 (833)
                      ..|+..+.||+|+||.||+|+...               ...||||++....   .......|.+|++++++++||||++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~ei~~l~~l~h~~i~~   81 (295)
T cd05097           5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADV---TKTARNDFLKEIKIMSRLKNPNIIR   81 (295)
T ss_pred             HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCC---CHHHHHHHHHHHHHHHhCCCCCcCe
Confidence            567888999999999999997632               2358999984221   1123457999999999999999999


Q ss_pred             ceEEEecCCceEEEEeeCCCCChhhhhhcCC----------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCcc
Q 003296          620 PLAYVLASDSAYLFYEYAPKGTLFDVLHGCL----------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTR  689 (833)
Q Consensus       620 ~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~----------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~  689 (833)
                      +++++...+..++||||+++|+|.+++....          ...++|.+++.++.|+++||+|||   ..+++||||||+
T Consensus        82 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~i~H~dlkp~  158 (295)
T cd05097          82 LLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLA---SLNFVHRDLATR  158 (295)
T ss_pred             EEEEEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHH---hcCeeccccChh
Confidence            9999999999999999999999999986431          124789999999999999999999   789999999999


Q ss_pred             ceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh--CCCcccCCcc
Q 003296          690 NIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT--GKTAVNQGNE  767 (833)
Q Consensus       690 Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt--g~~p~~~~~~  767 (833)
                      ||++++++.+|++|||+++...............++..|+|||+..+..++.++|||||||++|||++  |..||.....
T Consensus       159 Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~  238 (295)
T cd05097         159 NCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSD  238 (295)
T ss_pred             hEEEcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccCh
Confidence            99999999999999999976543322111223456789999999988889999999999999999998  5677764322


Q ss_pred             HH--HHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          768 LA--KWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       768 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                      ..  .................   .      ....+..+.+++.+||+.||++||+|.+|++.|++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~l~~li~~~l~~~p~~RPs~~~i~~~l~~  295 (295)
T cd05097         239 EQVIENTGEFFRNQGRQIYLS---Q------TPLCPSPVFKLMMRCWSRDIKDRPTFNKIHHFLRE  295 (295)
T ss_pred             HHHHHHHHHhhhhccccccCC---C------CCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhC
Confidence            11  11111000000000000   0      00123478899999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=5.2e-39  Score=337.80  Aligned_cols=255  Identities=16%  Similarity=0.215  Sum_probs=201.8

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      ..+|+..+.||+|+||.||+|+. .+|+.||+|++....    ....+.+.+|+.++++++||||+++++++..++..++
T Consensus         8 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~----~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~i   83 (267)
T cd06646           8 QHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEP----GDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWI   83 (267)
T ss_pred             hhhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCc----cchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEE
Confidence            35688889999999999999996 578999999984221    1224568899999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||||+++|+|.++++.  ...+++..+..++.|++.|+.|||   ..+|+|||+||+||++++++.+|++|||+++....
T Consensus        84 v~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~  158 (267)
T cd06646          84 CMEYCGGGSLQDIYHV--TGPLSELQIAYVCRETLQGLAYLH---SKGKMHRDIKGANILLTDNGDVKLADFGVAAKITA  158 (267)
T ss_pred             EEeCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEECCCCCEEECcCccceeecc
Confidence            9999999999999875  346899999999999999999999   78999999999999999999999999999987643


Q ss_pred             CCCCCcccccccccccccccccc---CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAY---TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      ...  ......|++.|+|||.+.   ...++.++|||||||++|||++|+.||..........   ......   ...+.
T Consensus       159 ~~~--~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~~~~---~~~~~~---~~~~~  230 (267)
T cd06646         159 TIA--KRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALF---LMSKSN---FQPPK  230 (267)
T ss_pred             ccc--ccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccchhhhhe---eeecCC---CCCCC
Confidence            221  123457899999999874   3457889999999999999999999986432211100   000000   00000


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML  829 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L  829 (833)
                      ..    .....+.++.+++.+||+.||++|||++++++++
T Consensus       231 ~~----~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~l  266 (267)
T cd06646         231 LK----DKTKWSSTFHNFVKISLTKNPKKRPTAERLLTHL  266 (267)
T ss_pred             Cc----cccccCHHHHHHHHHHhhCChhhCcCHHHHhcCC
Confidence            10    0112345788999999999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=1e-38  Score=337.82  Aligned_cols=257  Identities=21%  Similarity=0.304  Sum_probs=201.5

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCc----eEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGM----SYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD  628 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~----~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~  628 (833)
                      .++|+..+.||+|+||.||+|.. ++|.    .||+|+++....   ....+++.+|+.++++++||||++++++|.. .
T Consensus         6 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~---~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~   81 (279)
T cd05109           6 ETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTS---PKANKEILDEAYVMAGVGSPYVCRLLGICLT-S   81 (279)
T ss_pred             hhheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCC---HHHHHHHHHHHHHHHhcCCCCCceEEEEEcC-C
Confidence            45678889999999999999985 4554    489999842211   1234678999999999999999999999975 4


Q ss_pred             ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeee
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK  708 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~  708 (833)
                      ..+++|||+++|+|.++++.. ...+++.+++.++.|++.||+|||   +.+|+||||||+||++++++.+|++|||+++
T Consensus        82 ~~~l~~~~~~~g~l~~~l~~~-~~~~~~~~~~~~~~qi~~~L~~lH---~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~  157 (279)
T cd05109          82 TVQLVTQLMPYGCLLDYVREN-KDRIGSQDLLNWCVQIAKGMSYLE---EVRLVHRDLAARNVLVKSPNHVKITDFGLAR  157 (279)
T ss_pred             CcEEEEEcCCCCCHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccccceEEEcCCCcEEECCCCcee
Confidence            578999999999999999753 346899999999999999999999   7899999999999999999999999999998


Q ss_pred             eeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccccccccc
Q 003296          709 VIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       709 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (833)
                      ...............+++.|||||+..+..++.++|||||||++|||++ |..||....... .. ..........    
T Consensus       158 ~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~-~~-~~~~~~~~~~----  231 (279)
T cd05109         158 LLDIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPARE-IP-DLLEKGERLP----  231 (279)
T ss_pred             ecccccceeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHH-HH-HHHHCCCcCC----
Confidence            7753322211122345678999999988889999999999999999998 899986432211 11 0111111000    


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                        .      ....+.++.+++.+||+.||++||++.|+++.|+++
T Consensus       232 --~------~~~~~~~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~  268 (279)
T cd05109         232 --Q------PPICTIDVYMIMVKCWMIDSECRPRFRELVDEFSRM  268 (279)
T ss_pred             --C------CccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHh
Confidence              0      012345678999999999999999999999998875

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-40  Score=347.45  Aligned_cols=250  Identities=16%  Similarity=0.219  Sum_probs=203.9

Q ss_pred             cCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      +++...+|.|+||.||||+.+ ++...|.|++..    ......++|.-||+||+.++||+||++++.|+.++.+|+..|
T Consensus        34 WeIiGELGDGAFGKVyKA~nket~~lAAaKvIet----kseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliE  109 (1187)
T KOG0579|consen   34 WEIIGELGDGAFGKVYKAVNKETKLLAAAKVIET----KSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIE  109 (1187)
T ss_pred             HHHHhhhcCccchhhhhhhcccchhhhhhhhhcc----cchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEe
Confidence            345567899999999999975 556677788832    223446789999999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      ||.||-...++-.- +..+.+.++..++.|++.||.|||   +..|||||+|..|||++-+|.+|++|||++....... 
T Consensus       110 FC~GGAVDaimlEL-~r~LtE~QIqvvc~q~ldALn~LH---s~~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t~-  184 (1187)
T KOG0579|consen  110 FCGGGAVDAIMLEL-GRVLTEDQIQVVCYQVLDALNWLH---SQNIIHRDLKAGNILLTLDGDIRLADFGVSAKNKSTR-  184 (1187)
T ss_pred             ecCCchHhHHHHHh-ccccchHHHHHHHHHHHHHHHHHh---hcchhhhhccccceEEEecCcEeeecccccccchhHH-
Confidence            99999998887653 457999999999999999999999   8899999999999999999999999999875432211 


Q ss_pred             CCcccccccccccccccccc-----CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296          716 TGSLSTVAGSVGYIPPEYAY-----TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                       ....++.|||+|||||+..     ..+|++++||||||++|.||.-+.+|..+-+.+...+.....+..        .+
T Consensus       185 -qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhelnpMRVllKiaKSePP--------TL  255 (1187)
T KOG0579|consen  185 -QKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPP--------TL  255 (1187)
T ss_pred             -hhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccchHHHHHHHhhcCCC--------cc
Confidence             1235689999999999875     457999999999999999999999999876655444333222211        11


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                          ..+......+.+++.+||.++|..||++.++++|
T Consensus       256 ----lqPS~Ws~~F~DfLk~cL~Knp~~Rp~aaqll~H  289 (1187)
T KOG0579|consen  256 ----LQPSHWSRSFSDFLKRCLVKNPRNRPPAAQLLKH  289 (1187)
T ss_pred             ----cCcchhhhHHHHHHHHHHhcCCccCCCHHHHhhC
Confidence                1123456678899999999999999999999876

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=9.2e-39  Score=333.80  Aligned_cols=248  Identities=18%  Similarity=0.242  Sum_probs=196.4

Q ss_pred             ccccCcccEEEEEEc---CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCC
Q 003296          562 VELKTRFSTYYKAVM---PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       562 ~ig~g~~g~vy~~~~---~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~  638 (833)
                      .||+|+||.||+|++   +++..||+|+++....  .....++|.+|+.++++++||||+++++++. .+..++||||++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~~~   78 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNN--DPALKDELLREANVMQQLDNPYIVRMIGICE-AESWMLVMELAE   78 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCC--cHHHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCcEEEEecCC
Confidence            589999999999975   3678999999842221  1223568999999999999999999999885 456799999999


Q ss_pred             CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCC-C
Q 003296          639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST-G  717 (833)
Q Consensus       639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~-~  717 (833)
                      +|+|.+++..  ...+++..+..++.|++.|++|+|   +.+|+||||||+||++++++.+|++|||+++........ .
T Consensus        79 ~~~L~~~l~~--~~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~  153 (257)
T cd05116          79 LGPLNKFLQK--NKHVTEKNITELVHQVSMGMKYLE---ETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYK  153 (257)
T ss_pred             CCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccchhhEEEcCCCeEEECCCccccccCCCCCeee
Confidence            9999999975  346899999999999999999999   789999999999999999999999999999876433211 1


Q ss_pred             ccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCCchh
Q 003296          718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLA  796 (833)
Q Consensus       718 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  796 (833)
                      ......++..|+|||.+....++.++|||||||++|||++ |+.||...... .+..... .....      ..+     
T Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~-~~~~~i~-~~~~~------~~~-----  220 (257)
T cd05116         154 AKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGN-EVTQMIE-SGERM------ECP-----  220 (257)
T ss_pred             ecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHH-HHHHHHH-CCCCC------CCC-----
Confidence            1122345679999999888889999999999999999998 99999754332 2222111 11110      011     


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          797 VRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       797 ~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                       ...+.++.+++.+||+.||++||++++|.++|++
T Consensus       221 -~~~~~~l~~li~~~~~~~p~~Rp~~~~i~~~l~~  254 (257)
T cd05116         221 -QRCPPEMYDLMKLCWTYGVDERPGFAVVELRLRN  254 (257)
T ss_pred             -CCCCHHHHHHHHHHhccCchhCcCHHHHHHHHhc
Confidence             1234567899999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=1.4e-38  Score=334.93  Aligned_cols=254  Identities=22%  Similarity=0.240  Sum_probs=192.3

Q ss_pred             cccccCcccEEEEEEcC---CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeC
Q 003296          561 NVELKTRFSTYYKAVMP---SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYA  637 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~  637 (833)
                      +.||+|+||.||+|+..   ++..+|+|+++....   ......|.+|+.++++++|||||++++++.+....++||||+
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   77 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSAS---VQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFC   77 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCC---hHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECC
Confidence            36899999999999863   356799999842221   122357899999999999999999999999999999999999


Q ss_pred             CCCChhhhhhcCCC---CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          638 PKGTLFDVLHGCLE---NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       638 ~~g~L~~~l~~~~~---~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ++|+|.++++....   ...++..+..++.|+++|++|||   +.+++||||||+||+++.++.+|++|||+++......
T Consensus        78 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~  154 (269)
T cd05087          78 PLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLH---KNNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKED  154 (269)
T ss_pred             CCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHH---HCCEeccccCcceEEEcCCCcEEECCccccccccCcc
Confidence            99999999975322   24678888899999999999999   7889999999999999999999999999987543222


Q ss_pred             CCCccccccccccccccccccCC-------cccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccc
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTM-------RVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHIL  786 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~-------~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  786 (833)
                      .........|+..|+|||++.+.       .++.++|||||||++|||++ |+.||...............   ......
T Consensus       155 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~---~~~~~~  231 (269)
T cd05087         155 YYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDEQVLTYTVRE---QQLKLP  231 (269)
T ss_pred             eeecCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChHHHHHHHhhc---ccCCCC
Confidence            11112235678899999987532       35789999999999999996 99999754332222111111   111111


Q ss_pred             cccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 003296          787 DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLL  830 (833)
Q Consensus       787 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~  830 (833)
                      ++....      .....+.+++.+|+ .+|++|||++||++.|+
T Consensus       232 ~~~~~~------~~~~~~~~l~~~c~-~~P~~Rpt~~~l~~~l~  268 (269)
T cd05087         232 KPRLKL------PLSDRWYEVMQFCW-LQPEQRPSAEEVHLLLS  268 (269)
T ss_pred             CCccCC------CCChHHHHHHHHHh-cCcccCCCHHHHHHHhc
Confidence            111111      12335677889998 68999999999999875

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=2e-38  Score=331.96  Aligned_cols=254  Identities=19%  Similarity=0.275  Sum_probs=205.5

Q ss_pred             HHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      .++|...+.||+|+||.||+|..++++.||+|.+....     ....+|.+|+.++++++||||+++++++ .++..++|
T Consensus         5 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~-----~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~~v   78 (260)
T cd05067           5 RETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGS-----MSPEAFLAEANLMKQLQHPRLVRLYAVV-TQEPIYII   78 (260)
T ss_pred             hHHceeeeeeccCccceEEeeecCCCceEEEEEecCCC-----CcHHHHHHHHHHHHhcCCcCeeeEEEEE-ccCCcEEE
Confidence            45788889999999999999999899999999984221     2346799999999999999999999986 45678999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++.......+++.++..++.|++.||+|||   +.+++||||||+||++++++.++++|||++......
T Consensus        79 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH---~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~  155 (260)
T cd05067          79 TEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIE---RKNYIHRDLRAANILVSETLCCKIADFGLARLIEDN  155 (260)
T ss_pred             EEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecccccHHhEEEcCCCCEEEccCcceeecCCC
Confidence            99999999999997654557899999999999999999999   788999999999999999999999999999876422


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      ... ......++..|+|||++.+..++.++|||||||++||+++ |+.||.+.... +...... .....      ... 
T Consensus       156 ~~~-~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~-~~~~~~~-~~~~~------~~~-  225 (260)
T cd05067         156 EYT-AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNP-EVIQNLE-RGYRM------PRP-  225 (260)
T ss_pred             Ccc-cccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCChH-HHHHHHH-cCCCC------CCC-
Confidence            211 1123456788999999988889999999999999999999 99999754322 1111111 10000      000 


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                           ...+.++.+++.+|++.+|++||+++++...|+.
T Consensus       226 -----~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  259 (260)
T cd05067         226 -----DNCPEELYELMRLCWKEKPEERPTFEYLRSVLED  259 (260)
T ss_pred             -----CCCCHHHHHHHHHHccCChhhCCCHHHHHHHhhc
Confidence                 1123468899999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=5.6e-39  Score=344.94  Aligned_cols=264  Identities=16%  Similarity=0.238  Sum_probs=200.0

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +.|...+.||+|+||.||+|+.. ++..||+|+++...   .......+.+|++++++++||||+++++++..++..++|
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   82 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEH---EEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLV   82 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccc---cCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEE
Confidence            35777889999999999999975 78899999984221   122345688999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++ +|.+++... ...+++..+..++.|+++||+|||   +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus        83 ~e~~~~-~l~~~~~~~-~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~  157 (309)
T cd07872          83 FEYLDK-DLKQYMDDC-GNIMSMHNVKIFLYQILRGLAYCH---RRKVLHRDLKPQNLLINERGELKLADFGLARAKSVP  157 (309)
T ss_pred             EeCCCC-CHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEECccccceecCCC
Confidence            999975 898888753 345889999999999999999999   789999999999999999999999999999765332


Q ss_pred             CCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHH--Hhhccc--cccccc---
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVL--RNSAQQ--DKLDHI---  785 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~--~~~~~~--~~~~~~---  785 (833)
                      ..  ......||+.|+|||++.+ ..++.++|||||||++|||+||+.||.+.........  ......  .....+   
T Consensus       158 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (309)
T cd07872         158 TK--TYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTEETWPGISSN  235 (309)
T ss_pred             cc--ccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhhcch
Confidence            21  1234568999999998865 4588999999999999999999999975443222111  110000  000000   


Q ss_pred             ---ccccccCC-----chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          786 ---LDFNVSRT-----SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       786 ---~~~~~~~~-----~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                         .+......     .........++.+++.+|++.||++|||++|+++|
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h  286 (309)
T cd07872         236 DEFKNYNFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMKH  286 (309)
T ss_pred             hhhhhhhcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHHhcC
Confidence               00000000     00001234567899999999999999999999875

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=6.8e-39  Score=340.91  Aligned_cols=263  Identities=19%  Similarity=0.209  Sum_probs=197.6

Q ss_pred             cCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC---CCCCcccceEEEecC-----
Q 003296          557 ANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL---SNSNVMTPLAYVLAS-----  627 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l---~H~niv~~~~~~~~~-----  627 (833)
                      |+..+.||+|+||.||+|... +|+.||+|.++...  ........+.+|+++++++   +||||+++++++...     
T Consensus         2 y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~   79 (288)
T cd07863           2 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQT--NEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRE   79 (288)
T ss_pred             ceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCc--CCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCC
Confidence            667789999999999999974 78999999984321  1122334577888887766   699999999998652     


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                      ...++||||++ ++|.+++.......+++..+..++.|++.||+|||   +.+|+||||||+||++++++.+|++|||++
T Consensus        80 ~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dikp~Nili~~~~~~kl~dfg~~  155 (288)
T cd07863          80 TKVTLVFEHVD-QDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLH---ANCIVHRDLKPENILVTSGGQVKLADFGLA  155 (288)
T ss_pred             ceEEEEEcccc-cCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEECccCcc
Confidence            45899999997 49999987654456899999999999999999999   788999999999999999999999999999


Q ss_pred             eeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhh--cc--ccccc
Q 003296          708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNS--AQ--QDKLD  783 (833)
Q Consensus       708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~--~~--~~~~~  783 (833)
                      +......   ......||..|+|||++.+..++.++||||+||++|||++|++||.+............  ..  .....
T Consensus       156 ~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  232 (288)
T cd07863         156 RIYSCQM---ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWP  232 (288)
T ss_pred             ccccCcc---cCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHHHHHHHHHHhCCCChhhCc
Confidence            8764322   12346789999999999888899999999999999999999999975543322111110  00  00000


Q ss_pred             -------ccccccccCC-chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          784 -------HILDFNVSRT-SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       784 -------~~~~~~~~~~-~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                             ....+..... .........++.+++.+|++.||++|||+.|++.|
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~h  285 (288)
T cd07863         233 RDVTLPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQH  285 (288)
T ss_pred             ccccccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence                   0000000000 00011234567899999999999999999999865

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=8.1e-39  Score=338.81  Aligned_cols=259  Identities=20%  Similarity=0.282  Sum_probs=205.7

Q ss_pred             HHhcCCccccccCcccEEEEEEcCC-----CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec-C
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMPS-----GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA-S  627 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~~-----~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~-~  627 (833)
                      .++|...++||+|+||.||+|....     +..||+|++....   .....+.+.+|+.++++++||||+++++++.. +
T Consensus         5 ~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~---~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~   81 (280)
T cd05043           5 RDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHA---SEIQVTLLLQESCLLYGLSHQNILPILHVCIEDG   81 (280)
T ss_pred             hhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCC---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCC
Confidence            4567888999999999999999754     7889999984221   12234678999999999999999999999876 4


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCC------CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCcee
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLE------NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQI  701 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~------~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki  701 (833)
                      ...++++||+++|+|.+++.....      ..++|.++..++.|++.||+|||   +.+++||||||+||++++++.+|+
T Consensus        82 ~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH---~~~i~H~di~p~nil~~~~~~~kl  158 (280)
T cd05043          82 EPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLH---KRGVIHKDIAARNCVIDEELQVKI  158 (280)
T ss_pred             CCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccCHhhEEEcCCCcEEE
Confidence            778999999999999999975322      45899999999999999999999   789999999999999999999999


Q ss_pred             ccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccc
Q 003296          702 GDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQD  780 (833)
Q Consensus       702 ~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~  780 (833)
                      +|||+++.+.............++..|+|||++.+..++.++|||||||++||+++ |+.||...... ++..... ...
T Consensus       159 ~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~-~~~~~~~-~~~  236 (280)
T cd05043         159 TDNALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDPF-EMAAYLK-DGY  236 (280)
T ss_pred             CCCCCcccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCHH-HHHHHHH-cCC
Confidence            99999986543322111123456778999999988889999999999999999999 99999754332 2221111 111


Q ss_pred             cccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          781 KLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       781 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ...        ..    ...+.++.+++.+||+.||++|||+.||++.|+++
T Consensus       237 ~~~--------~~----~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~~  276 (280)
T cd05043         237 RLA--------QP----INCPDELFAVMACCWALDPEERPSFSQLVQCLTDF  276 (280)
T ss_pred             CCC--------CC----CcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence            100        00    11234678999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=1.7e-38  Score=332.32  Aligned_cols=253  Identities=20%  Similarity=0.259  Sum_probs=203.2

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +.|.....||+|+||.||+|....+..||+|++....     ...+.|.+|++++++++|||++++++++. .+..++||
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~-----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~   79 (260)
T cd05069           6 ESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGT-----MMPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIVT   79 (260)
T ss_pred             HHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCC-----ccHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEEE
Confidence            4577788999999999999998777789999984221     23467999999999999999999999875 56689999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.++++......++|..+..++.|++.||+|||   +.+|+||||||+||++++++.+|++|||+++......
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~  156 (260)
T cd05069          80 EFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIE---RMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNE  156 (260)
T ss_pred             EcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeecccCcceEEEcCCCeEEECCCccceEccCCc
Confidence            9999999999998654456899999999999999999999   7889999999999999999999999999998764332


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      .. ......++..|+|||+..+..++.++|||||||++|||+| |+.||.+......+. ..... ..      ...   
T Consensus       157 ~~-~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~-~~~~~-~~------~~~---  224 (260)
T cd05069         157 YT-ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNREVLE-QVERG-YR------MPC---  224 (260)
T ss_pred             cc-ccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHH-HHHcC-CC------CCC---
Confidence            11 1123346778999999988889999999999999999999 899997544322111 11110 00      000   


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                         ....+..+.+++.+||+.||++||++++|.+.|++
T Consensus       225 ---~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  259 (260)
T cd05069         225 ---PQGCPESLHELMKLCWKKDPDERPTFEYIQSFLED  259 (260)
T ss_pred             ---CcccCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence               11234578899999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=1.8e-38  Score=331.40  Aligned_cols=249  Identities=21%  Similarity=0.299  Sum_probs=201.8

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEe-cCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVL-ASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~-~~~~~~lv  633 (833)
                      .+|...+.||+|+||.||+|.. .|..||+|.++..      ...+.|.+|+.++++++|||++++++++. .++..++|
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~-~~~~~~~k~~~~~------~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv   78 (256)
T cd05082           6 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND------ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV   78 (256)
T ss_pred             HhCeeeeeecccCCCeEEEEEE-cCCcEEEEEeCCC------chHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEE
Confidence            4677889999999999999986 4888999998421      22467999999999999999999999865 45678999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.++++......++|..+..++.|++.||+|||   ..+|+||||||+||++++++.+|++|||+++.....
T Consensus        79 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~  155 (256)
T cd05082          79 TEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---ANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST  155 (256)
T ss_pred             EECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeccccchheEEEcCCCcEEecCCccceecccc
Confidence            99999999999998654456899999999999999999999   789999999999999999999999999998865332


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      .     ....++..|+|||+..+..++.++|||||||++|||++ |+.||.... ........... ..      +... 
T Consensus       156 ~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~-~~~~~~~~~~~-~~------~~~~-  221 (256)
T cd05082         156 Q-----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP-LKDVVPRVEKG-YK------MDAP-  221 (256)
T ss_pred             C-----CCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCC-HHHHHHHHhcC-CC------CCCC-
Confidence            2     23345678999999988889999999999999999998 999986432 22222211111 00      0000 


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                           ...+..+.+++.+|++.+|++|||+.+++++|+++
T Consensus       222 -----~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~~  256 (256)
T cd05082         222 -----DGCPPVVYDVMKQCWHLDAATRPSFLQLREQLEHI  256 (256)
T ss_pred             -----CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHhcC
Confidence                 12345678999999999999999999999999874

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=6.4e-39  Score=344.16  Aligned_cols=258  Identities=20%  Similarity=0.239  Sum_probs=202.9

Q ss_pred             HhcCCccccccCcccEEEEEEcC--------CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEe
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP--------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVL  625 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~  625 (833)
                      +.|...+.||+|+||.||+|...        ++..||+|.++...   .....+++.+|+++++++ +||||++++++|.
T Consensus        18 ~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~---~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~   94 (307)
T cd05098          18 DRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDA---TEKDLSDLISEMEMMKMIGKHKNIINLLGACT   94 (307)
T ss_pred             HHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCC---ChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEe
Confidence            56888899999999999999752        23579999994221   112345788999999999 7999999999999


Q ss_pred             cCCceEEEEeeCCCCChhhhhhcCC--------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccce
Q 003296          626 ASDSAYLFYEYAPKGTLFDVLHGCL--------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNI  691 (833)
Q Consensus       626 ~~~~~~lv~ey~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Ni  691 (833)
                      ..+..|+||||+++|+|.+++....              ...++|.++..++.|++.||+|||   +.+++||||||+||
T Consensus        95 ~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH---~~gi~H~dlkp~Ni  171 (307)
T cd05098          95 QDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNV  171 (307)
T ss_pred             cCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH---HCCcccccccHHhe
Confidence            9999999999999999999997532              135899999999999999999999   78999999999999


Q ss_pred             eeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHH
Q 003296          692 FLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAK  770 (833)
Q Consensus       692 ll~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~  770 (833)
                      +++.++.+|++|||.++...............+++.|||||++.+..++.++|||||||++|||++ |+.||.+. ...+
T Consensus       172 ll~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~-~~~~  250 (307)
T cd05098         172 LVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV-PVEE  250 (307)
T ss_pred             EEcCCCcEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcC-CHHH
Confidence            999999999999999876532221111122335578999999988889999999999999999998 88888643 3222


Q ss_pred             HHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          771 WVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ...... .....      ..      ......++.+++.+||+.+|++||||.||+++|+++
T Consensus       251 ~~~~~~-~~~~~------~~------~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~l~~~  299 (307)
T cd05098         251 LFKLLK-EGHRM------DK------PSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI  299 (307)
T ss_pred             HHHHHH-cCCCC------CC------CCcCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHH
Confidence            222111 11100      00      012245778899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.1e-38  Score=337.14  Aligned_cols=258  Identities=18%  Similarity=0.220  Sum_probs=204.7

Q ss_pred             HHhcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS  627 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~  627 (833)
                      .++|...+.||+|+||.||+|...      ++..||+|.+.....   ......|.+|+.++++++||||+++++++...
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~---~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~   81 (277)
T cd05032           5 REKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENAS---MRERIEFLNEASVMKEFNCHHVVRLLGVVSTG   81 (277)
T ss_pred             hHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccC---HHHHHHHHHHHHHHHhCCCCceeEEEEEEcCC
Confidence            456788899999999999999864      347899999842211   12245789999999999999999999999999


Q ss_pred             CceEEEEeeCCCCChhhhhhcCC--------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCc
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCL--------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEP  699 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~--------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~  699 (833)
                      +..++||||+++|+|.+++....        ...++|..+..++.|++.||.|||   +.+|+||||||+||++++++.+
T Consensus        82 ~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~di~p~nill~~~~~~  158 (277)
T cd05032          82 QPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLA---AKKFVHRDLAARNCMVAEDLTV  158 (277)
T ss_pred             CCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccChheEEEcCCCCE
Confidence            99999999999999999997532        124789999999999999999999   7899999999999999999999


Q ss_pred             eeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcc
Q 003296          700 QIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQ  778 (833)
Q Consensus       700 ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~  778 (833)
                      |++|||+++...............+|..|+|||++.+..++.++|||||||++||++| |+.||.+.... +...... .
T Consensus       159 kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~-~~~~~~~-~  236 (277)
T cd05032         159 KIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSNE-EVLKFVI-D  236 (277)
T ss_pred             EECCcccchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCCHH-HHHHHHh-c
Confidence            9999999986543322122234567889999999988889999999999999999998 99999643322 1111111 1


Q ss_pred             cccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          779 QDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                      ... .     ..+.      ..+.++.+++.+||+.+|++|||+.|+++.|++
T Consensus       237 ~~~-~-----~~~~------~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  277 (277)
T cd05032         237 GGH-L-----DLPE------NCPDKLLELMRMCWQYNPKMRPTFLEIVSSLKD  277 (277)
T ss_pred             CCC-C-----CCCC------CCCHHHHHHHHHHcCCChhhCCCHHHHHHHhcC
Confidence            110 0     0111      124578899999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=100.00  E-value=3.2e-39  Score=347.66  Aligned_cols=259  Identities=21%  Similarity=0.210  Sum_probs=205.7

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-C-----CCcccceEEEecCC
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-N-----SNVMTPLAYVLASD  628 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H-----~niv~~~~~~~~~~  628 (833)
                      .|++.++||+|+||.|-||++ .+++.||||+++.+..     ...+-..|+.+|..++ |     -|+|++++||..++
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~-----f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~  261 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKR-----FLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRN  261 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccChH-----HHHHHHHHHHHHHHHhccCCCCCeeEEEeeecccccc
Confidence            678899999999999999997 5799999999964332     2345567999999997 5     38999999999999


Q ss_pred             ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC--CCceecccee
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL--KEPQIGDIEL  706 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~--~~~ki~dfgl  706 (833)
                      +.|||+|.++. +|+++++......++....+.++.||+.||.+||   ..+|||+||||+||||.+-  ..+||+|||.
T Consensus       262 HlciVfELL~~-NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~---~l~IIHcDLKPENILL~~~~r~~vKVIDFGS  337 (586)
T KOG0667|consen  262 HLCIVFELLST-NLYELLKNNKFRGLSLPLVRKFAQQILTALLFLH---ELGIIHCDLKPENILLKDPKRSRIKVIDFGS  337 (586)
T ss_pred             ceeeeehhhhh-hHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCChhheeeccCCcCceeEEeccc
Confidence            99999999965 9999999877778999999999999999999999   8899999999999999643  3789999999


Q ss_pred             eeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc
Q 003296          707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL  786 (833)
Q Consensus       707 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  786 (833)
                      |......     ..+.+-+..|.|||++.+.+|+.+.||||||||++||++|.+-|.++++.++........+.....++
T Consensus       338 Sc~~~q~-----vytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~ne~DQl~~I~e~lG~Pp~~mL  412 (586)
T KOG0667|consen  338 SCFESQR-----VYTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGDNEYDQLARIIEVLGLPPPKML  412 (586)
T ss_pred             ccccCCc-----ceeeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCCCHHHHHHHHHHHhCCCCHHHH
Confidence            9865432     24678899999999999999999999999999999999998888877766554332221111111111


Q ss_pred             ----------cc-----------c--------------------ccCC--ch----hHH-HHHHHHHHHHHhccCCCCCC
Q 003296          787 ----------DF-----------N--------------------VSRT--SL----AVR-SQMLTVLKVAVACVSVSPEA  818 (833)
Q Consensus       787 ----------~~-----------~--------------------~~~~--~~----~~~-~~~~~~~~l~~~cl~~dP~~  818 (833)
                                +.           .                    ...+  ..    ... ..-..+++++.+|++.||.+
T Consensus       413 ~~~~~~~kff~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~P~~~~~l~~~~~~~~~~~F~dflk~~L~~dP~~  492 (586)
T KOG0667|consen  413 DTAKKAHKFFTSLKGFPRLCVETSAPRGTKSPEVRKYYRKARLERRGPPGSRSLESGLPKADDKLFIDFLKRCLEWDPAE  492 (586)
T ss_pred             HhccccceehhccCCceeeeeeecccccccchhhhhhhhhhcccccCCCCCcccchhcccccHHHHHHHHHHHhccCchh
Confidence                      00           0                    0000  00    000 22346899999999999999


Q ss_pred             CCCHHHHHHH
Q 003296          819 RPKMKSVLRM  828 (833)
Q Consensus       819 Rps~~evl~~  828 (833)
                      |+|..|+++|
T Consensus       493 R~tp~qal~H  502 (586)
T KOG0667|consen  493 RITPAQALNH  502 (586)
T ss_pred             cCCHHHHhcC
Confidence            9999999876

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=2e-38  Score=329.78  Aligned_cols=248  Identities=19%  Similarity=0.265  Sum_probs=198.2

Q ss_pred             cccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCCCC
Q 003296          561 NVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKG  640 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~g  640 (833)
                      ++||+|+||.||+|..+++..||+|.+....   .......|.+|++++++++||||++++++|...+..++||||+++|
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   77 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDL---PQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGG   77 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcC---CHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCC
Confidence            3689999999999998889999999984221   1122357899999999999999999999999999999999999999


Q ss_pred             ChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCccc
Q 003296          641 TLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLS  720 (833)
Q Consensus       641 ~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~  720 (833)
                      +|.+++... ...++|.++..++.|++.||.|+|   ..+++||||||+||+++.++.+|++|||++......... ...
T Consensus        78 ~L~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~-~~~  152 (250)
T cd05085          78 DFLSFLRKK-KDELKTKQLVKFALDAAAGMAYLE---SKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYS-SSG  152 (250)
T ss_pred             cHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccChheEEEcCCCeEEECCCccceeccccccc-cCC
Confidence            999998753 345899999999999999999999   789999999999999999999999999998764322211 112


Q ss_pred             cccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHH
Q 003296          721 TVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRS  799 (833)
Q Consensus       721 ~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  799 (833)
                      ...++..|+|||++.+..++.++|||||||++||+++ |..||.+..... ... ........      ...      ..
T Consensus       153 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~~-~~~-~~~~~~~~------~~~------~~  218 (250)
T cd05085         153 LKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQQ-ARE-QVEKGYRM------SCP------QK  218 (250)
T ss_pred             CCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHHH-HHH-HHHcCCCC------CCC------CC
Confidence            2345678999999988889999999999999999998 999997543221 111 11111100      000      12


Q ss_pred             HHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 003296          800 QMLTVLKVAVACVSVSPEARPKMKSVLRMLL  830 (833)
Q Consensus       800 ~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~  830 (833)
                      .+.++.+++.+|++.+|++||++.|+++.|.
T Consensus       219 ~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~  249 (250)
T cd05085         219 CPDDVYKVMQRCWDYKPENRPKFSELQKELA  249 (250)
T ss_pred             CCHHHHHHHHHHcccCcccCCCHHHHHHHhc
Confidence            2457889999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=8.2e-39  Score=346.54  Aligned_cols=257  Identities=16%  Similarity=0.188  Sum_probs=198.4

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|+..+.||+|+||.||+|+.. +++.||||++. +.........+.|.+|+.++.+++||||++++++|..++..|+||
T Consensus         2 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~-~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (331)
T cd05597           2 DFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILN-KWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVM   80 (331)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEE-HHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEE
Confidence            5778899999999999999974 78999999994 222222334567899999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.+++.+. ...+++..+..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||++.......
T Consensus        81 e~~~g~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~  156 (331)
T cd05597          81 DYYVGGDLLTLLSKF-EDRLPEDMARFYLAEMVLAIDSVH---QLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADG  156 (331)
T ss_pred             ecCCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH---hCCeEECCCCHHHEEECCCCCEEEEECCceeecCCCC
Confidence            999999999999753 345889999999999999999999   8899999999999999999999999999997664332


Q ss_pred             CCCccccccccccccccccccC-----CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          715 STGSLSTVAGSVGYIPPEYAYT-----MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      .. .....+||+.|||||++..     ..++.++|||||||++|||++|+.||.+......+. ..........      
T Consensus       157 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~-~i~~~~~~~~------  228 (331)
T cd05597         157 TV-QSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYG-KIMNHKEHFQ------  228 (331)
T ss_pred             Cc-cccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCCCHHHHHH-HHHcCCCccc------
Confidence            21 1233579999999999863     457889999999999999999999997544322221 1111111000      


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCC--CCCCCHHHHHHH
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSP--EARPKMKSVLRM  828 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP--~~Rps~~evl~~  828 (833)
                      +...   ....+.++.+++.+|+..++  ..||+++|+++|
T Consensus       229 ~~~~---~~~~~~~~~~li~~ll~~~~~r~~r~~~~~~l~h  266 (331)
T cd05597         229 FPPD---VTDVSEEAKDLIRRLICSPETRLGRNGLQDFKDH  266 (331)
T ss_pred             CCCc---cCCCCHHHHHHHHHHccCcccccCCCCHHHHhcC
Confidence            0000   01134466778888775544  348899999876

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=4.4e-39  Score=352.71  Aligned_cols=264  Identities=18%  Similarity=0.152  Sum_probs=201.1

Q ss_pred             HHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC---
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS---  627 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~---  627 (833)
                      ...+.|...+.||+|+||.||+|... +++.||||++....  ......+.+.+|+.+++.++||||+++++++...   
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~   91 (355)
T cd07874          14 TVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPF--QNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSL   91 (355)
T ss_pred             hhhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcc--cChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccc
Confidence            34567888999999999999999974 78999999984221  1122346788999999999999999999998654   


Q ss_pred             ---CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccc
Q 003296          628 ---DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDI  704 (833)
Q Consensus       628 ---~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~df  704 (833)
                         ...|+||||+++ ++.+.+..    .+++.++..++.|+++||+|||   +.+|+||||||+||+++.++.+||+||
T Consensus        92 ~~~~~~~lv~e~~~~-~l~~~~~~----~l~~~~~~~~~~qi~~aL~~LH---~~givHrDikp~Nill~~~~~~kl~Df  163 (355)
T cd07874          92 EEFQDVYLVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDF  163 (355)
T ss_pred             cccceeEEEhhhhcc-cHHHHHhh----cCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChHHEEECCCCCEEEeeC
Confidence               347999999975 67777653    4889999999999999999999   789999999999999999999999999


Q ss_pred             eeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc----
Q 003296          705 ELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD----  780 (833)
Q Consensus       705 gl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~----  780 (833)
                      |+++......   ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+......+.........    
T Consensus       164 g~~~~~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~  240 (355)
T cd07874         164 GLARTAGTSF---MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPE  240 (355)
T ss_pred             cccccCCCcc---ccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHH
Confidence            9998654322   223467999999999999888999999999999999999999999865543333211110000    


Q ss_pred             -----------------ccccccccc------ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          781 -----------------KLDHILDFN------VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       781 -----------------~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                                       .......+.      .............++.+++.+|++.||++|||+.|+++|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~h  311 (355)
T cd07874         241 FMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQH  311 (355)
T ss_pred             HHHhhcHHHHHHHhcCCccccccchhhccccccccccccccccchHHHHHHHHHhcCCchhcCCHHHHhcC
Confidence                             000000000      000000011123567899999999999999999999986

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=1.5e-38  Score=339.53  Aligned_cols=255  Identities=23%  Similarity=0.274  Sum_probs=198.8

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCc--eEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCce
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGM--SYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~--~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~  630 (833)
                      ++|...++||+|+||.||+|+.. +|.  .+|+|.++...   .....+.|.+|+++++++ +|||||++++++...+..
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~   78 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFA---SENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYL   78 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccC---CHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcc
Confidence            35778899999999999999874 443  47888884211   112246799999999999 799999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCC--------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC
Q 003296          631 YLFYEYAPKGTLFDVLHGCL--------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL  696 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~  696 (833)
                      ++||||+++|+|.++++...              ...+++..+..++.|++.||+|||   +.+|+||||||+||+++++
T Consensus        79 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH---~~~ivH~dlkp~Nill~~~  155 (297)
T cd05089          79 YIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLS---EKQFIHRDLAARNVLVGEN  155 (297)
T ss_pred             eEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCcCCcceEEECCC
Confidence            99999999999999997532              125889999999999999999999   7899999999999999999


Q ss_pred             CCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHh
Q 003296          697 KEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRN  775 (833)
Q Consensus       697 ~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~  775 (833)
                      +.+|++|||++........   ......+..|+|||+..+..++.++|||||||++|||+| |+.||...... ......
T Consensus       156 ~~~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~~-~~~~~~  231 (297)
T cd05089         156 LASKIADFGLSRGEEVYVK---KTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTCA-ELYEKL  231 (297)
T ss_pred             CeEEECCcCCCccccceec---cCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHH-HHHHHH
Confidence            9999999999864321111   111233567999999988889999999999999999998 99999754322 221111


Q ss_pred             hcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          776 SAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ...       ......      ...+..+.+++.+||+.+|.+||+++|++++|+++
T Consensus       232 ~~~-------~~~~~~------~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  275 (297)
T cd05089         232 PQG-------YRMEKP------RNCDDEVYELMRQCWRDRPYERPPFAQISVQLSRM  275 (297)
T ss_pred             hcC-------CCCCCC------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            110       000010      12334678999999999999999999999998765

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=1.1e-38  Score=340.23  Aligned_cols=250  Identities=21%  Similarity=0.307  Sum_probs=203.1

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ..|+..+.+|+|+||.||+|+. .+|+.||+|.+....    ....+.+.+|++++++++||||++++++|..++..|+|
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~----~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv   95 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQ----QPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVV   95 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCC----cchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEe
Confidence            3567778999999999999996 578999999984221    12346789999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++++   ..+++.++..++.|++.||+|||   ..+|+||||||+||+++.++.+||+|||+++.....
T Consensus        96 ~e~~~~~~L~~~~~~---~~~~~~~~~~i~~ql~~aL~~LH---~~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~  169 (296)
T cd06654          96 MEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE  169 (296)
T ss_pred             ecccCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCEEECccccchhcccc
Confidence            999999999999874   35899999999999999999999   788999999999999999999999999998765433


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      ..  ......|++.|+|||++.+..++.++|||||||++|||++|+.||........+..... ...  ..     ..  
T Consensus       170 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~~~~~~~~-~~~--~~-----~~--  237 (296)
T cd06654         170 QS--KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIAT-NGT--PE-----LQ--  237 (296)
T ss_pred             cc--ccCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHHHhHHHHhc-CCC--CC-----CC--
Confidence            21  12345789999999999888899999999999999999999999976544332221111 100  00     00  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        ........+.+++.+||+.||++|||+.|++++
T Consensus       238 --~~~~~~~~l~~li~~~l~~~p~~Rpt~~eil~~  270 (296)
T cd06654         238 --NPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQH  270 (296)
T ss_pred             --CccccCHHHHHHHHHHCcCCcccCcCHHHHhhC
Confidence              011233567789999999999999999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=1.9e-38  Score=333.72  Aligned_cols=258  Identities=19%  Similarity=0.281  Sum_probs=204.1

Q ss_pred             HHhcCCccccccCcccEEEEEEcC-CC---ceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP-SG---MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS  629 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~---~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~  629 (833)
                      .++|+..+.||+|+||.||+|+.. ++   ..+|||++.....   ....+.|.+|++++++++||||+++.+++...+.
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   80 (268)
T cd05063           4 PSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYT---EKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKP   80 (268)
T ss_pred             hHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCC---HHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCC
Confidence            356788899999999999999974 33   3799999842211   1224679999999999999999999999999999


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                      .++||||+++|+|.++++.. ...++|.++..++.|++.|++|||   +.+++||||||+||++++++.+|++|||++..
T Consensus        81 ~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~  156 (268)
T cd05063          81 AMIITEYMENGALDKYLRDH-DGEFSSYQLVGMLRGIAAGMKYLS---DMNYVHRDLAARNILVNSNLECKVSDFGLSRV  156 (268)
T ss_pred             cEEEEEcCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccchhhEEEcCCCcEEECCCcccee
Confidence            99999999999999999753 346899999999999999999999   78899999999999999999999999999986


Q ss_pred             eCCCCCCCc-cccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccccccccc
Q 003296          710 IDPSKSTGS-LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       710 ~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (833)
                      ......... ......+..|+|||++.+..++.++|||||||++|||++ |+.||...... ++..... ......    
T Consensus       157 ~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~~-~~~~~i~-~~~~~~----  230 (268)
T cd05063         157 LEDDPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSNH-EVMKAIN-DGFRLP----  230 (268)
T ss_pred             cccccccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCHH-HHHHHHh-cCCCCC----
Confidence            643221111 111233567999999988889999999999999999998 99999754322 2221111 110000    


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                          .    ....+.++.+++.+||+.+|++||++.+|++.|+++
T Consensus       231 ----~----~~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~  267 (268)
T cd05063         231 ----A----PMDCPSAVYQLMLQCWQQDRARRPRFVDIVNLLDKL  267 (268)
T ss_pred             ----C----CCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence                0    012345788999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.4e-38  Score=354.45  Aligned_cols=258  Identities=16%  Similarity=0.161  Sum_probs=196.5

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      .|...+.||+|+||.||+|... +++.||||...          ...+.+|++++++++|||||++++++...+..++||
T Consensus       170 gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~----------~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~  239 (461)
T PHA03211        170 GFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW----------YASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVL  239 (461)
T ss_pred             CeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc----------ccCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEE
Confidence            5778889999999999999975 68899999752          234678999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+. |+|.+++... ...++|.+++.|+.|+++||+|||   ..+||||||||+|||++.++.+||+|||+++......
T Consensus       240 e~~~-~~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~  314 (461)
T PHA03211        240 PKYR-SDLYTYLGAR-LRPLGLAQVTAVARQLLSAIDYIH---GEGIIHRDIKTENVLVNGPEDICLGDFGAACFARGSW  314 (461)
T ss_pred             EccC-CCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCEEECcCCHHHEEECCCCCEEEcccCCceeccccc
Confidence            9995 7999988753 336999999999999999999999   7899999999999999999999999999998764332


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCc------c----HHHHHHHhhcccccccc
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGN------E----LAKWVLRNSAQQDKLDH  784 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~------~----~~~~~~~~~~~~~~~~~  784 (833)
                      ........+||+.|||||++.+..++.++|||||||++|||++|..|+....      .    +...+............
T Consensus       315 ~~~~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~  394 (461)
T PHA03211        315 STPFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQ  394 (461)
T ss_pred             ccccccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccccCCC
Confidence            2222234679999999999999899999999999999999999887653211      0    11111110000000000


Q ss_pred             ccc----------------ccccCCc-hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          785 ILD----------------FNVSRTS-LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       785 ~~~----------------~~~~~~~-~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ...                +...... .........+.+++.+||+.||++|||+.|++++
T Consensus       395 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RPsa~elL~h  455 (461)
T PHA03211        395 HAGSRLVSQYRHRAARNRRPAYTRPAWTRYYKLDLDVEYLVCRALTFDGARRPSAAELLRL  455 (461)
T ss_pred             CcchHHHHHHHhhhhcccCCccCCcchhhhccccchHHHHHHHHcccChhhCcCHHHHhhC
Confidence            000                0000000 0001123467889999999999999999999986

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=2.1e-38  Score=330.88  Aligned_cols=249  Identities=18%  Similarity=0.245  Sum_probs=195.2

Q ss_pred             ccccCcccEEEEEEcC---CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCC
Q 003296          562 VELKTRFSTYYKAVMP---SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       562 ~ig~g~~g~vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~  638 (833)
                      .||+|+||.||+|+..   ++..||||.+....   .....++|.+|++++++++|||||+++++|. .+..++||||++
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~---~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~-~~~~~lv~e~~~   77 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNEN---EKSVRDEMMREAEIMHQLDNPYIVRMIGVCE-AEALMLVMEMAS   77 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEccccc---ChHHHHHHHHHHHHHHhcCCCCeEEEEEEEc-CCCeEEEEEeCC
Confidence            3899999999999763   45679999984221   1223467999999999999999999999885 457899999999


Q ss_pred             CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCC-
Q 003296          639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG-  717 (833)
Q Consensus       639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~-  717 (833)
                      +|+|.+++... ...+++.++..++.|++.||+|||   ..+++||||||+||+++.++.+|++|||+++......... 
T Consensus        78 ~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~  153 (257)
T cd05115          78 GGPLNKFLSGK-KDEITVSNVVELMHQVSMGMKYLE---GKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYK  153 (257)
T ss_pred             CCCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHH---hcCeeecccchheEEEcCCCcEEeccCCccccccCCcccee
Confidence            99999999753 346899999999999999999999   7899999999999999999999999999998654332211 


Q ss_pred             ccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCCchh
Q 003296          718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLA  796 (833)
Q Consensus       718 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  796 (833)
                      ......++..|+|||++.+..++.++|||||||++||+++ |+.||....... +... .......      ...     
T Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~-~~~~-~~~~~~~------~~~-----  220 (257)
T cd05115         154 ARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGPE-VMSF-IEQGKRL------DCP-----  220 (257)
T ss_pred             ccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCHHH-HHHH-HHCCCCC------CCC-----
Confidence            1112234678999999988889999999999999999996 999997543322 1111 1111110      000     


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          797 VRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       797 ~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                       ...+.++.+++.+||+.||++||++.+|.+.|+.+
T Consensus       221 -~~~~~~l~~li~~c~~~~~~~Rp~~~~i~~~l~~~  255 (257)
T cd05115         221 -AECPPEMYALMKDCWIYKWEDRPNFAKVEERMRTY  255 (257)
T ss_pred             -CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHhhh
Confidence             12245778999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=1.5e-38  Score=338.24  Aligned_cols=258  Identities=21%  Similarity=0.290  Sum_probs=203.8

Q ss_pred             HHhcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS  627 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~  627 (833)
                      .++|+..+.||+|+||.||+|...      ++..||+|++.....   ....++|.+|++++++++|||||+++++|..+
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~---~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~   80 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEAS---ADMQADFQREAALMAEFDHPNIVKLLGVCAVG   80 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcC---HHHHHHHHHHHHHHHhcCCCchheEEEEEcCC
Confidence            457888999999999999999863      568899999842211   12346799999999999999999999999999


Q ss_pred             CceEEEEeeCCCCChhhhhhcCC--------------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCC
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCL--------------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLS  687 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~--------------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk  687 (833)
                      +..++||||+++|+|.+++....                    ...+++.+++.++.|++.||+|||   ..+++|||||
T Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH---~~~i~H~dl~  157 (288)
T cd05050          81 KPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLS---ERKFVHRDLA  157 (288)
T ss_pred             CccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hCCeeccccc
Confidence            99999999999999999997421                    124788999999999999999999   7899999999


Q ss_pred             ccceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCc
Q 003296          688 TRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGN  766 (833)
Q Consensus       688 ~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~  766 (833)
                      |+||++++++.+|++|||+++...............+++.|+|||++.+..++.++|||||||++|||++ |..||.+..
T Consensus       158 p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~  237 (288)
T cd05050         158 TRNCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMA  237 (288)
T ss_pred             HhheEecCCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC
Confidence            9999999999999999999886543221111123345678999999988889999999999999999998 888886433


Q ss_pred             cHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          767 ELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                      . .++..... ....         ...   ....+.++.+++.+||+.||++|||+.|+++.|++
T Consensus       238 ~-~~~~~~~~-~~~~---------~~~---~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~~l~~  288 (288)
T cd05050         238 H-EEVIYYVR-DGNV---------LSC---PDNCPLELYNLMRLCWSKLPSDRPSFASINRILQR  288 (288)
T ss_pred             H-HHHHHHHh-cCCC---------CCC---CCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhhC
Confidence            2 22222111 1110         000   01234578899999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.8e-39  Score=348.70  Aligned_cols=244  Identities=17%  Similarity=0.176  Sum_probs=190.3

Q ss_pred             cccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC---CCCCcccceEEEecCCceEEEEeeCC
Q 003296          563 ELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL---SNSNVMTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       563 ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l---~H~niv~~~~~~~~~~~~~lv~ey~~  638 (833)
                      ||+|+||+||+|+.. +|+.||||++.. ...........+..|..++.+.   +||||+++++++..++..|+||||++
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~-~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~   79 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSK-KEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMS   79 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeH-HHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCC
Confidence            699999999999974 799999999942 2222222334566788887766   69999999999999999999999999


Q ss_pred             CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCc
Q 003296          639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS  718 (833)
Q Consensus       639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~  718 (833)
                      +|+|.+++..  ...+++..+..++.|+++||+|||   +.+|+||||||+|||++.++.+||+|||+++.......  .
T Consensus        80 ~g~L~~~l~~--~~~~~~~~~~~~~~qil~al~~LH---~~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~--~  152 (330)
T cd05586          80 GGELFWHLQK--EGRFSEDRAKFYIAELVLALEHLH---KYDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNK--T  152 (330)
T ss_pred             CChHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCC--C
Confidence            9999999875  456899999999999999999999   78999999999999999999999999999875432221  2


Q ss_pred             cccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhH
Q 003296          719 LSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAV  797 (833)
Q Consensus       719 ~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  797 (833)
                      ....+||+.|||||++.+. .++.++||||+||++|||+||+.||...... +..........        .+..     
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~~~-~~~~~i~~~~~--------~~~~-----  218 (330)
T cd05586         153 TNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQ-QMYRNIAFGKV--------RFPK-----  218 (330)
T ss_pred             ccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCCHH-HHHHHHHcCCC--------CCCC-----
Confidence            2456799999999998754 4899999999999999999999999754322 21111111100        0110     


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCC----CHHHHHHH
Q 003296          798 RSQMLTVLKVAVACVSVSPEARP----KMKSVLRM  828 (833)
Q Consensus       798 ~~~~~~~~~l~~~cl~~dP~~Rp----s~~evl~~  828 (833)
                      .....++.+++.+||+.||++||    ++.|+++|
T Consensus       219 ~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~ll~h  253 (330)
T cd05586         219 NVLSDEGRQFVKGLLNRNPQHRLGAHRDAVELKEH  253 (330)
T ss_pred             ccCCHHHHHHHHHHcCCCHHHCCCCCCCHHHHhcC
Confidence            01234667899999999999998    56666553

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.8e-38  Score=332.89  Aligned_cols=256  Identities=19%  Similarity=0.244  Sum_probs=204.0

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccch-hhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDK-IFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      ++|+..+.||+|+||.||+|.. .+|+.||+|.+..... .......+.+.+|++++++++||||+++++++..++..++
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   81 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI   81 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence            3577889999999999999996 4789999999842211 1111234578999999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||||+++|+|.+++..  ...+++..+..++.|++.|++|||   ..+|+||||||+||++++++.+|++|||+++....
T Consensus        82 v~e~~~~~~l~~~~~~--~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~  156 (263)
T cd06625          82 FMEYMPGGSVKDQLKA--YGALTETVTRKYTRQILEGVEYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQT  156 (263)
T ss_pred             EEEECCCCcHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccceeccc
Confidence            9999999999999976  346889999999999999999999   78999999999999999999999999999986543


Q ss_pred             CCCCC-ccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296          713 SKSTG-SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       713 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      ..... ......|+..|+|||++.+..++.++||||+||++|||++|+.||............. .. ...     ..+.
T Consensus       157 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~-~~-~~~-----~~~~  229 (263)
T cd06625         157 ICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEAMAAIFKIA-TQ-PTN-----PQLP  229 (263)
T ss_pred             cccccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccchHHHHHHHh-cc-CCC-----CCCC
Confidence            22111 1123568899999999998889999999999999999999999997544332221111 11 000     0011


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                            ......+.+++.+||+.+|++|||+.|++++
T Consensus       230 ------~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  260 (263)
T cd06625         230 ------SHVSPDARNFLRRTFVENAKKRPSAEELLRH  260 (263)
T ss_pred             ------ccCCHHHHHHHHHHhhcCcccCCCHHHHhhC
Confidence                  1233467889999999999999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=2e-38  Score=338.62  Aligned_cols=263  Identities=18%  Similarity=0.237  Sum_probs=200.8

Q ss_pred             HhcCCccccccCcccEEEEEEcC-----------------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCc
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-----------------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNV  617 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-----------------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~ni  617 (833)
                      ++|+..+.||+|+||.||++...                 ++..||+|++....   .....++|.+|++++++++||||
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~---~~~~~~~~~~E~~~l~~l~~~~i   81 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDA---NKNARNDFLKEIKIMSRLKDPNI   81 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccC---CHHHHHHHHHHHHHHHhCCCCCc
Confidence            46888899999999999998532                 34579999984221   12234689999999999999999


Q ss_pred             ccceEEEecCCceEEEEeeCCCCChhhhhhcCCC---------CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCc
Q 003296          618 MTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLE---------NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLST  688 (833)
Q Consensus       618 v~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~---------~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~  688 (833)
                      +++++++..++..++||||+++|+|.+++.....         ..++|.++..++.|++.|++|||   +.+|+||||||
T Consensus        82 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH---~~~i~H~dlkp  158 (296)
T cd05095          82 IRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLS---SLNFVHRDLAT  158 (296)
T ss_pred             ceEEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHH---HCCeecccCCh
Confidence            9999999999999999999999999999875321         24788899999999999999999   78899999999


Q ss_pred             cceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh--CCCcccCCc
Q 003296          689 RNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT--GKTAVNQGN  766 (833)
Q Consensus       689 ~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt--g~~p~~~~~  766 (833)
                      +||+++.++.+|++|||+++...............+++.|+|||+..++.++.++|||||||++|||++  |..||....
T Consensus       159 ~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~  238 (296)
T cd05095         159 RNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLS  238 (296)
T ss_pred             heEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccC
Confidence            999999999999999999986543221111123345678999999888889999999999999999998  778886433


Q ss_pred             cHHHHHHHhhccc-ccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          767 ELAKWVLRNSAQQ-DKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       767 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                      .. +......... ........   ...    ...+..+.+++.+||+.||++||+|.||++.|++
T Consensus       239 ~~-~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  296 (296)
T cd05095         239 DE-QVIENTGEFFRDQGRQVYL---PKP----ALCPDSLYKLMLSCWRRNAKERPSFQEIHATLLE  296 (296)
T ss_pred             hH-HHHHHHHHHHhhccccccC---CCC----CCCCHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence            21 1111110000 00000000   000    1223577899999999999999999999999874

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=1e-38  Score=338.55  Aligned_cols=265  Identities=22%  Similarity=0.277  Sum_probs=200.7

Q ss_pred             cCCccccccCcccEEEEEEc-----CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC--Cc
Q 003296          557 ANPLNVELKTRFSTYYKAVM-----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS--DS  629 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~--~~  629 (833)
                      |...+.||+|+||+||.+..     .++..||+|.++...   .....+.|.+|++++++++||||++++++|...  ..
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   82 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKREC---GQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKG   82 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEecccc---ChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCce
Confidence            47788999999999987652     468899999984221   112356789999999999999999999998764  35


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                      .++||||+++|+|.+++..   ..++|.++..++.|++.||+|||   +.+|+||||||+||++++++.+|++|||+++.
T Consensus        83 ~~lv~e~~~~~~l~~~~~~---~~l~~~~~~~i~~~l~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~  156 (283)
T cd05080          83 LQLIMEYVPLGSLRDYLPK---HKLNLAQLLLFAQQICEGMAYLH---SQHYIHRDLAARNVLLDNDRLVKIGDFGLAKA  156 (283)
T ss_pred             EEEEecCCCCCCHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccChheEEEcCCCcEEEeecccccc
Confidence            8999999999999999975   35899999999999999999999   78999999999999999999999999999987


Q ss_pred             eCCCCCCCc-cccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhc-c--ccccccc
Q 003296          710 IDPSKSTGS-LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSA-Q--QDKLDHI  785 (833)
Q Consensus       710 ~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~-~--~~~~~~~  785 (833)
                      ......... .....++..|+|||+..+..++.++|||||||++|||+||+.|+............... .  .......
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (283)
T cd05080         157 VPEGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIEL  236 (283)
T ss_pred             cCCcchhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhh
Confidence            643221111 12234567899999998888999999999999999999999998643221110000000 0  0001111


Q ss_pred             ccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          786 LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       786 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .+......  .....+.++.+++.+||+.||++|||+++|++.|+++
T Consensus       237 ~~~~~~~~--~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~  281 (283)
T cd05080         237 LERGMRLP--CPKNCPQEVYILMKNCWETEAKFRPTFRSLIPILKEM  281 (283)
T ss_pred             hhcCCCCC--CCCCCCHHHHHHHHHHhccChhhCCCHHHHHHHHHHh
Confidence            11111111  0112346788999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=1.2e-38  Score=341.14  Aligned_cols=255  Identities=25%  Similarity=0.296  Sum_probs=199.1

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCc--eEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCce
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGM--SYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~--~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~  630 (833)
                      ++|+..+.||+|+||.||+|.+. +|.  .+|+|+++...   .....+.|.+|++++.++ +|||||++++++..++..
T Consensus         7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~   83 (303)
T cd05088           7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYA---SKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYL   83 (303)
T ss_pred             hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccC---CHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCc
Confidence            56788899999999999999964 554  45777773211   112346789999999999 899999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCC--------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC
Q 003296          631 YLFYEYAPKGTLFDVLHGCL--------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL  696 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~  696 (833)
                      |+||||+++|+|.++++...              ...+++.+++.++.|++.|++|||   +.+|+||||||+|||++++
T Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~~gi~H~dlkp~Nili~~~  160 (303)
T cd05088          84 YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGEN  160 (303)
T ss_pred             eEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHH---hCCccccccchheEEecCC
Confidence            99999999999999997532              125789999999999999999999   7899999999999999999


Q ss_pred             CCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHh
Q 003296          697 KEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRN  775 (833)
Q Consensus       697 ~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~  775 (833)
                      +.+|++|||+++......   ......++..|+|||++.+..++.++|||||||++|||+| |..||..... .+.....
T Consensus       161 ~~~kl~dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~-~~~~~~~  236 (303)
T cd05088         161 YVAKIADFGLSRGQEVYV---KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC-AELYEKL  236 (303)
T ss_pred             CcEEeCccccCcccchhh---hcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCCh-HHHHHHH
Confidence            999999999986432111   1112334678999999888889999999999999999998 9999964332 1211111


Q ss_pred             hcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          776 SAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                       .......      ..      ...+.++.+++.+||+.+|++||++++++++|+++
T Consensus       237 -~~~~~~~------~~------~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~  280 (303)
T cd05088         237 -PQGYRLE------KP------LNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM  280 (303)
T ss_pred             -hcCCcCC------CC------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence             1100000      00      11234678999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=7.3e-39  Score=346.91  Aligned_cols=257  Identities=15%  Similarity=0.172  Sum_probs=200.4

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|...+.||+|+||.||+++.. +++.||||.+.. .........+.|.+|+.++.+++||||+++++++.+++..|+||
T Consensus         2 ~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~-~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           2 DFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNK-WEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeH-HHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            5778899999999999999974 788999999842 22222333556889999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.++++.. ...+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++......
T Consensus        81 Ey~~gg~L~~~l~~~-~~~l~~~~~~~~~~qi~~~L~~lH---~~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~  156 (331)
T cd05624          81 DYYVGGDLLTLLSKF-EDRLPEDMARFYIAEMVLAIHSIH---QLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDG  156 (331)
T ss_pred             eCCCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCchHHEEEcCCCCEEEEeccceeeccCCC
Confidence            999999999999753 246889999999999999999999   8899999999999999999999999999998764332


Q ss_pred             CCCccccccccccccccccccC-----CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          715 STGSLSTVAGSVGYIPPEYAYT-----MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      .. .....+||+.|||||++.+     ..++.++|||||||++|||++|+.||........+. .........      .
T Consensus       157 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~-~i~~~~~~~------~  228 (331)
T cd05624         157 TV-QSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYG-KIMNHEERF------Q  228 (331)
T ss_pred             ce-eeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCCCHHHHHH-HHHcCCCcc------c
Confidence            21 2234679999999998865     467899999999999999999999997544322221 111110100      0


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCC--CCCHHHHHHH
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEA--RPKMKSVLRM  828 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~--Rps~~evl~~  828 (833)
                      .+   ......+.++.+++.+|+..++++  |++++++++|
T Consensus       229 ~p---~~~~~~~~~~~~li~~ll~~~~~~~~~~~~~~~~~h  266 (331)
T cd05624         229 FP---SHITDVSEEAKDLIQRLICSRERRLGQNGIEDFKKH  266 (331)
T ss_pred             CC---CccccCCHHHHHHHHHHccCchhhcCCCCHHHHhcC
Confidence            00   001123457788999998876654  4689988765

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.3e-38  Score=332.63  Aligned_cols=250  Identities=21%  Similarity=0.299  Sum_probs=205.1

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      ++|+..+.+|+|+||.||+|.. .|+.||||++.....     ..+++.+|+.++++++||||+++++++...+..++||
T Consensus         6 ~~~~~~~~ig~g~~g~v~~~~~-~~~~v~iK~~~~~~~-----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~   79 (256)
T cd05039           6 KELKLGATIGKGEFGDVMLGDY-RGQKVAVKCLKDDST-----AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVT   79 (256)
T ss_pred             hhccceeeeecCCCceEEEEEe-cCcEEEEEEeccchh-----HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEE
Confidence            4678889999999999999987 489999999942211     3578999999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.++++......++|..+..++.|++.||.|||   ..+++||||||+||+++.++.+|++|||.++......
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh---~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~  156 (256)
T cd05039          80 EYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLE---EKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQ  156 (256)
T ss_pred             EecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCccchhcccceEEEeCCCCEEEccccccccccccc
Confidence            9999999999998654447999999999999999999999   7899999999999999999999999999998763221


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                           ....++..|+|||++.+..++.++|||||||++|||++ |+.||..... ...... .......      ..   
T Consensus       157 -----~~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-~~~~~~-~~~~~~~------~~---  220 (256)
T cd05039         157 -----DSGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL-KDVVPH-VEKGYRM------EA---  220 (256)
T ss_pred             -----ccCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCH-HHHHHH-HhcCCCC------CC---
Confidence                 12345678999999988889999999999999999997 9999864422 111111 1110000      00   


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                         ....+.++.+++.+||+.+|++|||+.|++++|+++
T Consensus       221 ---~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~~  256 (256)
T cd05039         221 ---PEGCPPEVYKVMKDCWELDPAKRPTFKQLREQLALI  256 (256)
T ss_pred             ---ccCCCHHHHHHHHHHhccChhhCcCHHHHHHHHhcC
Confidence               012245778999999999999999999999999874

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.2e-39  Score=339.97  Aligned_cols=255  Identities=20%  Similarity=0.263  Sum_probs=202.0

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~~~~lv  633 (833)
                      ..|+..+.||+||.+.||++...+.+.||+|++..  ...+.+....|..|++.|.+++ |.+||++++|-..++.+|+|
T Consensus       361 ~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~--~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmv  438 (677)
T KOG0596|consen  361 REYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVL--LEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMV  438 (677)
T ss_pred             chhhHHHhhcCCCcceeeeeecCCCcchhhhHHHH--hhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEE
Confidence            34667789999999999999998999999999842  2334455678999999999996 99999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||-+- ||.++|+.......+| .++.|..|++.|+.++|   ..+|||.||||+|.|+- .|.+|++|||+|..+...
T Consensus       439 mE~Gd~-DL~kiL~k~~~~~~~~-~lk~ywkqML~aV~~IH---~~gIVHSDLKPANFLlV-kG~LKLIDFGIA~aI~~D  512 (677)
T KOG0596|consen  439 MECGDI-DLNKILKKKKSIDPDW-FLKFYWKQMLLAVKTIH---QHGIVHSDLKPANFLLV-KGRLKLIDFGIANAIQPD  512 (677)
T ss_pred             eecccc-cHHHHHHhccCCCchH-HHHHHHHHHHHHHHHHH---HhceeecCCCcccEEEE-eeeEEeeeechhcccCcc
Confidence            998755 9999999765555567 67789999999999999   78999999999999995 588999999999988655


Q ss_pred             CCCCccccccccccccccccccCC-----------cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccc
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTM-----------RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL  782 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~  782 (833)
                      .........+||+.||+||.+...           +.+.++||||+|||+|+|+.|+.||..-..  .|        .++
T Consensus       513 TTsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n--~~--------aKl  582 (677)
T KOG0596|consen  513 TTSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIIN--QI--------AKL  582 (677)
T ss_pred             ccceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHH--HH--------HHH
Confidence            433233457899999999987532           267899999999999999999999963211  12        123


Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          783 DHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ..+.|+....+.+.. ....++++++..||+.||++||++.|+++|
T Consensus       583 ~aI~~P~~~Iefp~~-~~~~~li~~mK~CL~rdPkkR~si~eLLqh  627 (677)
T KOG0596|consen  583 HAITDPNHEIEFPDI-PENDELIDVMKCCLARDPKKRWSIPELLQH  627 (677)
T ss_pred             HhhcCCCccccccCC-CCchHHHHHHHHHHhcCcccCCCcHHHhcC
Confidence            334444322111111 112248899999999999999999999875

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=7.3e-39  Score=339.90  Aligned_cols=267  Identities=23%  Similarity=0.300  Sum_probs=201.6

Q ss_pred             HhcCCccccccCcccEEEEEEc-----CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC--
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS--  627 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~--  627 (833)
                      +.|+..+.||+|+||.||+|..     .++..||||++....    ....+.|.+|++++++++|||||++++++...  
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~   79 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHST----AEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGR   79 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCC----HHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCC
Confidence            4577789999999999999974     368899999984322    12346799999999999999999999987643  


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                      ...++||||+++|+|.+++.+. ...++|..+..++.|++.||+|||   ..+|+||||||+||++++++.+|++|||++
T Consensus        80 ~~~~lv~e~~~~~~L~~~l~~~-~~~l~~~~~~~~~~~l~~aL~~LH---~~~i~H~dlkp~nili~~~~~~~l~dfg~~  155 (284)
T cd05081          80 RNLRLVMEYLPYGSLRDYLQKH-RERLDHRKLLLYASQICKGMEYLG---SKRYVHRDLATRNILVESENRVKIGDFGLT  155 (284)
T ss_pred             CceEEEEEecCCCCHHHHHHhc-CcCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCCHhhEEECCCCeEEECCCccc
Confidence            4689999999999999999753 235899999999999999999999   789999999999999999999999999999


Q ss_pred             eeeCCCCCCCc-cccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc---c--
Q 003296          708 KVIDPSKSTGS-LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD---K--  781 (833)
Q Consensus       708 ~~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~---~--  781 (833)
                      +.......... .....++..|+|||+..+..++.++|||||||++|||++|..|+.....  .+.........   .  
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  233 (284)
T cd05081         156 KVLPQDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPA--EFMRMMGNDKQGQMIVY  233 (284)
T ss_pred             ccccCCCcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcch--hhhhhcccccccccchH
Confidence            87643322111 1122345569999999888899999999999999999999877642211  11111000000   0  


Q ss_pred             -ccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296          782 -LDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR  833 (833)
Q Consensus       782 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r  833 (833)
                       +.+.+.......  .....+.++.+++.+||+.+|++||||+||++.|+.+|
T Consensus       234 ~~~~~~~~~~~~~--~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~~~  284 (284)
T cd05081         234 HLIELLKNNGRLP--APPGCPAEIYAIMKECWNNDPSQRPSFSELALQVEAIR  284 (284)
T ss_pred             HHHHHHhcCCcCC--CCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHhcC
Confidence             000010000000  01123457889999999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=9.3e-39  Score=346.43  Aligned_cols=257  Identities=16%  Similarity=0.167  Sum_probs=199.1

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|+..+.||+|+||.||+++.. +++.||+|++. +.........+.|.+|+.++..++||||+++++++.+++..|+||
T Consensus         2 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~-~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (332)
T cd05623           2 DFEILKVIGRGAFGEVAVVKLKNADKVFAMKILN-KWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVM   80 (332)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEe-HHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEE
Confidence            5777899999999999999975 67889999984 222222233456889999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.+++++. ...+++..+..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||+++......
T Consensus        81 ey~~~g~L~~~l~~~-~~~l~~~~~~~~~~qi~~al~~lH---~~~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~  156 (332)
T cd05623          81 DYYVGGDLLTLLSKF-EDRLPEDMARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDG  156 (332)
T ss_pred             eccCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHEEECCCCCEEEeecchheecccCC
Confidence            999999999999753 235899999999999999999999   7899999999999999999999999999997653322


Q ss_pred             CCCcccccccccccccccccc-----CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          715 STGSLSTVAGSVGYIPPEYAY-----TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      . ......+||+.|||||++.     ...++.++|||||||++|||++|+.||........ ...........      .
T Consensus       157 ~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~~~~~-~~~i~~~~~~~------~  228 (332)
T cd05623         157 T-VQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAESLVET-YGKIMNHKERF------Q  228 (332)
T ss_pred             c-ceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCCHHHH-HHHHhCCCccc------c
Confidence            1 1223467999999999886     34588999999999999999999999975543222 22211111100      0


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCC--CCCHHHHHHH
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEA--RPKMKSVLRM  828 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~--Rps~~evl~~  828 (833)
                      .+.   .....+.++.+++.+|+..+|++  ||++.|+++|
T Consensus       229 ~p~---~~~~~s~~~~~li~~ll~~~~~r~~r~~~~~~~~h  266 (332)
T cd05623         229 FPA---QVTDVSEDAKDLIRRLICSREHRLGQNGIEDFKQH  266 (332)
T ss_pred             CCC---ccccCCHHHHHHHHHHccChhhhcCCCCHHHHhCC
Confidence            000   01123456778888888655444  6899999876

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=1.8e-38  Score=337.47  Aligned_cols=259  Identities=18%  Similarity=0.221  Sum_probs=202.2

Q ss_pred             HHHhcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA  626 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~  626 (833)
                      ..+.|+..+.||+|+||.||+|...      .+..||+|.+.....   ......|.+|+.++++++||||+++++++..
T Consensus         4 ~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~   80 (288)
T cd05061           4 SREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESAS---LRERIEFLNEASVMKGFTCHHVVRLLGVVSK   80 (288)
T ss_pred             cHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCC---HHHHHHHHHHHHHHHhCCCCCeeeEEEEEcC
Confidence            3567888999999999999999743      356899999842211   1223568899999999999999999999999


Q ss_pred             CCceEEEEeeCCCCChhhhhhcCC--------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC
Q 003296          627 SDSAYLFYEYAPKGTLFDVLHGCL--------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE  698 (833)
Q Consensus       627 ~~~~~lv~ey~~~g~L~~~l~~~~--------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~  698 (833)
                      .+..++||||+++|+|.++++...        ....++..+..++.|++.||+|||   +++|+||||||+||++++++.
T Consensus        81 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dikp~nili~~~~~  157 (288)
T cd05061          81 GQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLN---AKKFVHRDLAARNCMVAHDFT  157 (288)
T ss_pred             CCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCCChheEEEcCCCc
Confidence            999999999999999999997532        124577888999999999999999   789999999999999999999


Q ss_pred             ceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhc
Q 003296          699 PQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSA  777 (833)
Q Consensus       699 ~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~  777 (833)
                      +|++|||+++...............++..|+|||+..+..++.++|||||||++|||++ |+.||.+... .+...... 
T Consensus       158 ~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~-~~~~~~~~-  235 (288)
T cd05061         158 VKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSN-EQVLKFVM-  235 (288)
T ss_pred             EEECcCCccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCCH-HHHHHHHH-
Confidence            99999999986543222111123346778999999988889999999999999999999 7888864322 22211111 


Q ss_pred             ccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          778 QQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                      .....         ...   ...+..+.+++.+|++.||++|||+.|+++.|++
T Consensus       236 ~~~~~---------~~~---~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~  277 (288)
T cd05061         236 DGGYL---------DQP---DNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKD  277 (288)
T ss_pred             cCCCC---------CCC---CCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHh
Confidence            11110         000   1123578899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=1.5e-38  Score=341.35  Aligned_cols=261  Identities=18%  Similarity=0.224  Sum_probs=201.4

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|+..+.||+|+||.||+|... +|..||+|.+.....   ....+++.+|++++++++|||||+++++|..++..++||
T Consensus         2 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   78 (308)
T cd06615           2 DFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIK---PAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICM   78 (308)
T ss_pred             CceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccC---HHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEe
Confidence            5778899999999999999964 788999998842211   122456889999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.++++.  ...+++..+..++.|+++||+|||+  ..+++||||||+||+++.++.+|++|||++.......
T Consensus        79 ey~~~~~L~~~l~~--~~~~~~~~~~~~~~~i~~~l~~lH~--~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~  154 (308)
T cd06615          79 EHMDGGSLDQVLKK--AGRIPENILGKISIAVLRGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM  154 (308)
T ss_pred             eccCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHh--hCCEEECCCChHHEEEecCCcEEEccCCCcccccccc
Confidence            99999999999986  3568999999999999999999994  2589999999999999999999999999987653221


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccc----------
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDH----------  784 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~----------  784 (833)
                          .....|++.|+|||+..+..++.++|||||||++|||++|+.||..... ..+.............          
T Consensus       155 ----~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (308)
T cd06615         155 ----ANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDA-KELEAMFGRPVSEGEAKESHRPVSGH  229 (308)
T ss_pred             ----cccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcch-hhHHHhhcCccccccccCCcccccCC
Confidence                2346789999999998888899999999999999999999999964332 1111111100000000          


Q ss_pred             ------------cccccccC--CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          785 ------------ILDFNVSR--TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       785 ------------~~~~~~~~--~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                                  ..+.....  +.........++.+++.+||+.||++|||++||+++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~  287 (308)
T cd06615         230 PPDSPRPMAIFELLDYIVNEPPPKLPSGAFSDEFQDFVDKCLKKNPKERADLKELTKH  287 (308)
T ss_pred             CCCccchhhHHHHHHHHhcCCCccCcCcccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                        00000000  000001134568899999999999999999999876

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=2e-38  Score=332.39  Aligned_cols=251  Identities=21%  Similarity=0.270  Sum_probs=193.3

Q ss_pred             cccccCcccEEEEEEcC----CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec-CCceEEEEe
Q 003296          561 NVELKTRFSTYYKAVMP----SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA-SDSAYLFYE  635 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~-~~~~~lv~e  635 (833)
                      +.||+|+||.||+|...    ++..||+|++....   .....+.|.+|+.++++++|||||++++++.. ++..++|||
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e   77 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRIT---DLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLP   77 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccC---CHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEe
Confidence            46899999999999853    34679999984221   11234678999999999999999999998764 556899999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      |+++|+|.++++.. ....++..+..++.|+++||+|||   ..+++||||||+||++++++.+|++|||+++.......
T Consensus        78 ~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~  153 (262)
T cd05058          78 YMKHGDLRNFIRSE-THNPTVKDLIGFGLQVAKGMEYLA---SKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEY  153 (262)
T ss_pred             cCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccCcceEEEcCCCcEEECCccccccccCCcc
Confidence            99999999999753 234688888999999999999999   78999999999999999999999999999976532211


Q ss_pred             C--CccccccccccccccccccCCcccccCcchhhHHHHHHHHhC-CCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          716 T--GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTG-KTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       716 ~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      .  .......++..|+|||+..+..++.++|||||||++|||++| .+||.... ........... ...      ..  
T Consensus       154 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~-~~~~~~~~~~~-~~~------~~--  223 (262)
T cd05058         154 YSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVD-SFDITVYLLQG-RRL------LQ--  223 (262)
T ss_pred             eeecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCCC-HHHHHHHHhcC-CCC------CC--
Confidence            0  011234567889999999888899999999999999999995 55565332 22222111111 000      00  


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                          ....+..+.+++.+||+.+|++||++.||+++|+++
T Consensus       224 ----~~~~~~~~~~li~~cl~~~p~~Rp~~~~il~~l~~~  259 (262)
T cd05058         224 ----PEYCPDPLYEVMLSCWHPKPEMRPTFSELVSRIEQI  259 (262)
T ss_pred             ----CCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence                011234678999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=9.6e-39  Score=351.17  Aligned_cols=263  Identities=17%  Similarity=0.157  Sum_probs=200.6

Q ss_pred             HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC----
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS----  627 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~----  627 (833)
                      ..+.|...+.||+|+||.||+|... .++.||||++....  ......+.+.+|+.+++.++||||+++++++...    
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~   99 (364)
T cd07875          22 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPF--QNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLE   99 (364)
T ss_pred             hhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccc--cCchhHHHHHHHHHHHHhcCCCCccccceeeccccccc
Confidence            4567888999999999999999974 78999999994221  1223346788999999999999999999988653    


Q ss_pred             --CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccce
Q 003296          628 --DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIE  705 (833)
Q Consensus       628 --~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfg  705 (833)
                        ...|+||||+++ +|.+.+..    .+++.++..++.|+++||+|||   +.+|+||||||+||+++.++.+||+|||
T Consensus       100 ~~~~~~lv~e~~~~-~l~~~~~~----~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG  171 (364)
T cd07875         100 EFQDVYIVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFG  171 (364)
T ss_pred             ccCeEEEEEeCCCC-CHHHHHHh----cCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCCHHHEEECCCCcEEEEeCC
Confidence              357999999975 78777753    4789999999999999999999   7899999999999999999999999999


Q ss_pred             eeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccc-
Q 003296          706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDH-  784 (833)
Q Consensus       706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~-  784 (833)
                      +++......   ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+......+............+ 
T Consensus       172 ~a~~~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  248 (364)
T cd07875         172 LARTAGTSF---MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEF  248 (364)
T ss_pred             CccccCCCC---cccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHH
Confidence            998654322   2234679999999999999899999999999999999999999998655443332211100000000 


Q ss_pred             ----------ccc--------------ccc--cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          785 ----------ILD--------------FNV--SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       785 ----------~~~--------------~~~--~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                                ...              +..  ............++.+++.+|++.||++|||+.|+++|
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~h  318 (364)
T cd07875         249 MKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH  318 (364)
T ss_pred             HHhhhHHHHHHHhhCCCcCCCChHhhCccccccccccccccccHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence                      000              000  00000001123467899999999999999999999876

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=3.8e-38  Score=331.23  Aligned_cols=253  Identities=18%  Similarity=0.204  Sum_probs=188.3

Q ss_pred             ccccCcccEEEEEEcCCC---ceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCC
Q 003296          562 VELKTRFSTYYKAVMPSG---MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       562 ~ig~g~~g~vy~~~~~~~---~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~  638 (833)
                      .||+|+||.||+|...++   ..+++|.+....   .....+.|.+|+.++++++|||||+++++|......|+||||++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   78 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANA---SSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCE   78 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCC---ChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCC
Confidence            589999999999986443   345666663211   12235789999999999999999999999999999999999999


Q ss_pred             CCChhhhhhcCC--CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCC
Q 003296          639 KGTLFDVLHGCL--ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST  716 (833)
Q Consensus       639 ~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~  716 (833)
                      +|+|.+++++..  ....++.....++.|+++||+|||   +.+|+||||||+|||++.++.+|++|||++.........
T Consensus        79 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH---~~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~  155 (268)
T cd05086          79 LGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMH---KHNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYI  155 (268)
T ss_pred             CCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHH---HCCeeccCCccceEEEcCCccEEecccccccccCcchhh
Confidence            999999998532  234677788899999999999999   788999999999999999999999999998643222111


Q ss_pred             CccccccccccccccccccC-------CcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          717 GSLSTVAGSVGYIPPEYAYT-------MRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       717 ~~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      .......|+..|+|||+...       ..++.++|||||||++|||++ |..||....... ........  ......++
T Consensus       156 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~-~~~~~~~~--~~~~~~~~  232 (268)
T cd05086         156 ETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSDRE-VLNHVIKD--QQVKLFKP  232 (268)
T ss_pred             hcccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCHHH-HHHHHHhh--cccccCCC
Confidence            11234578899999998743       245789999999999999997 466886443322 22111111  11112222


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLL  830 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~  830 (833)
                      .+...      ....+.+++..|| .+|++||+++||++.|.
T Consensus       233 ~~~~~------~~~~~~~l~~~c~-~~P~~Rp~~~~i~~~l~  267 (268)
T cd05086         233 QLELP------YSERWYEVLQFCW-LSPEKRATAEEVHRLLT  267 (268)
T ss_pred             ccCCC------CcHHHHHHHHHHh-hCcccCCCHHHHHHHhc
Confidence            22211      2345677888999 67999999999999874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=1.1e-38  Score=338.35  Aligned_cols=269  Identities=20%  Similarity=0.269  Sum_probs=202.0

Q ss_pred             HhcCCccccccCcccEEEEEEc-----CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC--
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS--  627 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~--  627 (833)
                      ..|...+.||+|+||.||+|..     .++..||+|.++....   ....+.|.+|++++++++||||+++++++...  
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   80 (284)
T cd05079           4 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESG---GNHIADLKKEIEILRNLYHENIVKYKGICTEDGG   80 (284)
T ss_pred             hhhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCcccc---HHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCC
Confidence            3467788999999999999973     3678999999852211   22346799999999999999999999999875  


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                      ...++||||+++|+|.+++... ...++|.++..++.|++.||+|+|   +.+|+||||||+||+++.++.+|++|||++
T Consensus        81 ~~~~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~i~~~i~~aL~~lH---~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~  156 (284)
T cd05079          81 NGIKLIMEFLPSGSLKEYLPRN-KNKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLT  156 (284)
T ss_pred             CceEEEEEccCCCCHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccchheEEEcCCCCEEECCCccc
Confidence            5689999999999999999753 235899999999999999999999   889999999999999999999999999999


Q ss_pred             eeeCCCCCC-CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccc---
Q 003296          708 KVIDPSKST-GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLD---  783 (833)
Q Consensus       708 ~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~---  783 (833)
                      +........ .......|+..|+|||+..+..++.++|||||||++|||+|++.|......................   
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (284)
T cd05079         157 KAIETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLV  236 (284)
T ss_pred             cccccCccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHH
Confidence            876432211 1112356778899999998888999999999999999999988765321110000000000000000   


Q ss_pred             ccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          784 HILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       784 ~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ..+......  +.....+.++.+++.+|++.+|++|||+.|+++.++++
T Consensus       237 ~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         237 RVLEEGKRL--PRPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             HHHHcCccC--CCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence            000000000  00112356788999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=2e-38  Score=330.92  Aligned_cols=250  Identities=20%  Similarity=0.280  Sum_probs=202.9

Q ss_pred             cCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      |+..+.||+|+||.||++... +++.||+|.++....   ....+.+.+|+.++++++||||+++++++.+++..|+|||
T Consensus         2 y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   78 (255)
T cd08219           2 YNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKS---SSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVME   78 (255)
T ss_pred             ceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcc---hHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEe
Confidence            667789999999999999974 789999999842211   2235678899999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      |+++|+|.+++.......+++.....++.|++.||.|||   +.+|+|+||||+||++++++.++++|||.++.......
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH---~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~  155 (255)
T cd08219          79 YCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIH---EKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGA  155 (255)
T ss_pred             eCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCcceEEECCCCcEEEcccCcceeeccccc
Confidence            999999999987644556899999999999999999999   78999999999999999999999999999987643221


Q ss_pred             CCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCch
Q 003296          716 TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSL  795 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  795 (833)
                        ......|++.|+|||++.+..++.++|||||||++|||++|+.||..... ........ . .....     ..    
T Consensus       156 --~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~-~~~~~~~~-~-~~~~~-----~~----  221 (255)
T cd08219         156 --YACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANSW-KNLILKVC-Q-GSYKP-----LP----  221 (255)
T ss_pred             --ccccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCCH-HHHHHHHh-c-CCCCC-----CC----
Confidence              12346789999999999888899999999999999999999999975432 21111111 1 11100     00    


Q ss_pred             hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          796 AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       796 ~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        ......+.+++.+||+.||++||++.|++..
T Consensus       222 --~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         222 --SHYSYELRSLIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             --cccCHHHHHHHHHHHhCCcccCCCHHHHhhc
Confidence              1223467799999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=2.3e-38  Score=333.24  Aligned_cols=257  Identities=18%  Similarity=0.272  Sum_probs=201.8

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CC---ceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SG---MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~---~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      ++|+..+.||+|+||.||+|... +|   ..||||++....   .....++|..|++++++++||||+++++++..++..
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~   80 (269)
T cd05065           4 SCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGY---TEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPV   80 (269)
T ss_pred             HHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCC---CHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCce
Confidence            35777899999999999999974 33   369999984221   122346899999999999999999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      ++||||+++|+|.+++... ...+++.+++.++.|++.|++|||   +.+++||||||+||+++.++.+|++|||+++..
T Consensus        81 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~~l~~al~~lH---~~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~  156 (269)
T cd05065          81 MIITEFMENGALDSFLRQN-DGQFTVIQLVGMLRGIAAGMKYLS---EMNYVHRDLAARNILVNSNLVCKVSDFGLSRFL  156 (269)
T ss_pred             EEEEecCCCCcHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccChheEEEcCCCcEEECCCcccccc
Confidence            9999999999999999753 346899999999999999999999   789999999999999999999999999998765


Q ss_pred             CCCCCCCcccc-c--cccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccc
Q 003296          711 DPSKSTGSLST-V--AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHIL  786 (833)
Q Consensus       711 ~~~~~~~~~~~-~--~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  786 (833)
                      ........... .  .++..|+|||++.+..++.++|||||||++|||++ |..||....... ...... ....     
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~~-~~~~i~-~~~~-----  229 (269)
T cd05065         157 EDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQD-VINAIE-QDYR-----  229 (269)
T ss_pred             ccCccccccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCHHH-HHHHHH-cCCc-----
Confidence            43221111111 1  12457999999998889999999999999999886 999997543221 111111 1000     


Q ss_pred             cccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          787 DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       787 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                         ...    ..+.+..+.+++.+||+.+|++||++++|+..|+++
T Consensus       230 ---~~~----~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  268 (269)
T cd05065         230 ---LPP----PMDCPTALHQLMLDCWQKDRNARPKFGQIVSTLDKM  268 (269)
T ss_pred             ---CCC----cccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence               000    012345678899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=2e-38  Score=343.30  Aligned_cols=262  Identities=15%  Similarity=0.188  Sum_probs=195.0

Q ss_pred             CccccccC--cccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          559 PLNVELKT--RFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       559 ~~~~ig~g--~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      ..++||+|  +||+||++.. ++|+.||||++.....  .....+.+.+|+++++.++|||||+++++|..++..++|||
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e   79 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEAC--TNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTS   79 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhc--cHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEe
Confidence            35689999  7889999987 5899999999942211  11223567789999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      |+++|+|.+++.......+++..++.++.|++.||+|||   +.+|+||||||+||+++.++.++++|||.+........
T Consensus        80 ~~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~  156 (327)
T cd08227          80 FMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIH---HMGYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQ  156 (327)
T ss_pred             ccCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCChhhEEEecCCcEEEcccchhhccccccc
Confidence            999999999997544456899999999999999999999   78899999999999999999999999986543321110


Q ss_pred             -C----CccccccccccccccccccC--CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc-
Q 003296          716 -T----GSLSTVAGSVGYIPPEYAYT--MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD-  787 (833)
Q Consensus       716 -~----~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-  787 (833)
                       .    .......++..|+|||++.+  ..++.++|||||||++|||++|+.||....... .......  .......+ 
T Consensus       157 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~~~~--~~~~~~~~~  233 (327)
T cd08227         157 RLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQ-MLLEKLN--GTVPCLLDT  233 (327)
T ss_pred             cccccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcchhH-HHHHHhc--CCccccccc
Confidence             0    00122457788999999875  458999999999999999999999997432211 1111000  00000000 


Q ss_pred             ------------------ccc--------c-------CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          788 ------------------FNV--------S-------RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       788 ------------------~~~--------~-------~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                                        ...        .       ...........++.+++.+||+.||++|||++|++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~ell~~  307 (327)
T cd08227         234 TTIPAEELTMKPSRSGANSGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLNH  307 (327)
T ss_pred             cchhhhhcccCCcccCCcCCCCcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcCCHHHHhcC
Confidence                              000        0       0000111234578899999999999999999999874

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=3.3e-38  Score=339.72  Aligned_cols=259  Identities=20%  Similarity=0.253  Sum_probs=201.8

Q ss_pred             HHhcCCccccccCcccEEEEEEcC--------CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP--------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYV  624 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~  624 (833)
                      .+.|...+.||+|+||.||+|...        .+..||+|+++....   .....++.+|+++++++ +|||||+++++|
T Consensus        11 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~---~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~   87 (314)
T cd05099          11 RDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNAT---DKDLADLISEMELMKLIGKHKNIINLLGVC   87 (314)
T ss_pred             HHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCC---hHHHHHHHHHHHHHHhccCCCCeeeEEEEE
Confidence            356778899999999999999741        346799999842211   12245789999999999 699999999999


Q ss_pred             ecCCceEEEEeeCCCCChhhhhhcCC--------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccc
Q 003296          625 LASDSAYLFYEYAPKGTLFDVLHGCL--------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRN  690 (833)
Q Consensus       625 ~~~~~~~lv~ey~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~N  690 (833)
                      ..++..++||||+++|+|.+++....              ...++|.++..++.|++.||.|||   +.+|+||||||+|
T Consensus        88 ~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH---~~gi~H~dlkp~N  164 (314)
T cd05099          88 TQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLE---SRRCIHRDLAARN  164 (314)
T ss_pred             ccCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHH---HCCeeecccccee
Confidence            99999999999999999999997532              135899999999999999999999   7899999999999


Q ss_pred             eeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHH
Q 003296          691 IFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELA  769 (833)
Q Consensus       691 ill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~  769 (833)
                      |++++++.+|++|||+++...............++..|||||++.+..++.++|||||||++|||++ |..||..... .
T Consensus       165 ill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~-~  243 (314)
T cd05099         165 VLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPV-E  243 (314)
T ss_pred             EEEcCCCcEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCCH-H
Confidence            9999999999999999986643221111122334568999999988889999999999999999999 8899864322 2


Q ss_pred             HHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          770 KWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ...... ......    +  ..      ...+.++.+++.+||+.||++|||+.|+++.|+++
T Consensus       244 ~~~~~~-~~~~~~----~--~~------~~~~~~l~~li~~cl~~~p~~Rps~~~ll~~l~~~  293 (314)
T cd05099         244 ELFKLL-REGHRM----D--KP------SNCTHELYMLMRECWHAVPTQRPTFKQLVEALDKV  293 (314)
T ss_pred             HHHHHH-HcCCCC----C--CC------CCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHH
Confidence            211111 111100    0  00      12234677999999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.8e-38  Score=346.22  Aligned_cols=263  Identities=17%  Similarity=0.192  Sum_probs=198.5

Q ss_pred             HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC---
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS---  627 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~---  627 (833)
                      ...+.|...+.||+|+||.||+|.. .+++.||||++....  ......+.+.+|++++++++|||||++++++...   
T Consensus        12 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   89 (343)
T cd07878          12 EVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPF--QSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSI   89 (343)
T ss_pred             hhhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchh--hhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccc
Confidence            3456788889999999999999996 578999999984321  1122345688999999999999999999988643   


Q ss_pred             ---CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccc
Q 003296          628 ---DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDI  704 (833)
Q Consensus       628 ---~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~df  704 (833)
                         ...|++|||+ +++|.++++.   ..+++..+..++.|++.||+|||   +.+|+||||||+||++++++.+||+||
T Consensus        90 ~~~~~~~~~~~~~-~~~l~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrdikp~Nil~~~~~~~kl~Df  162 (343)
T cd07878          90 ENFNEVYLVTNLM-GADLNNIVKC---QKLSDEHVQFLIYQLLRGLKYIH---SAGIIHRDLKPSNVAVNEDCELRILDF  162 (343)
T ss_pred             cccCcEEEEeecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeecccCChhhEEECCCCCEEEcCC
Confidence               3579999998 7799988763   45899999999999999999999   789999999999999999999999999


Q ss_pred             eeeeeeCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccc
Q 003296          705 ELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLD  783 (833)
Q Consensus       705 gl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~  783 (833)
                      |+++.....     .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+...................
T Consensus       163 g~~~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~  237 (343)
T cd07878         163 GLARQADDE-----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYIDQLKRIMEVVGTPSP  237 (343)
T ss_pred             ccceecCCC-----cCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCCH
Confidence            999865432     234679999999999876 56899999999999999999999999754432222111100000000


Q ss_pred             cccc-----------ccccCCc-hh----HHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          784 HILD-----------FNVSRTS-LA----VRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       784 ~~~~-----------~~~~~~~-~~----~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ....           ....... ..    .......+.+++.+|++.||++|||+.|++.|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~ell~h  298 (343)
T cd07878         238 EVLKKISSEHARKYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALAH  298 (343)
T ss_pred             HHHHhcchhhHHHHhhccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            0000           0000000 00    00122357799999999999999999999875

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=2e-38  Score=333.74  Aligned_cols=251  Identities=21%  Similarity=0.314  Sum_probs=197.7

Q ss_pred             cccccCcccEEEEEEcCC-------CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          561 NVELKTRFSTYYKAVMPS-------GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~~-------~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +.||+|+||.||+|+..+       ++.||||.+....   .......|.+|++++++++||||++++++|...+..++|
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v   77 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGA---TDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYII   77 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhccc---chhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEE
Confidence            368999999999998632       3679999884221   112356799999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCC-----CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC-----Cceecc
Q 003296          634 YEYAPKGTLFDVLHGCL-----ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK-----EPQIGD  703 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~-----~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~-----~~ki~d  703 (833)
                      |||+++|+|.+++....     ...++|.+++.++.|++.|++|||   +.+++|+||||+||+++.++     .+|++|
T Consensus        78 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~~~~~~l~d  154 (269)
T cd05044          78 MELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLE---QMHFIHRDLAARNCLVSEKGYDADRVVKIGD  154 (269)
T ss_pred             EeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHH---hCCcccCCCChheEEEecCCCCCCcceEECC
Confidence            99999999999997532     234889999999999999999999   78899999999999999877     899999


Q ss_pred             ceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccc
Q 003296          704 IELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKL  782 (833)
Q Consensus       704 fgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~  782 (833)
                      ||+++...............++..|+|||++.+..++.++|||||||++|||+| |+.||....... .... .......
T Consensus       155 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~~~-~~~~-~~~~~~~  232 (269)
T cd05044         155 FGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNNQE-VLQH-VTAGGRL  232 (269)
T ss_pred             cccccccccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCHHH-HHHH-HhcCCcc
Confidence            999976543222111123356788999999998889999999999999999998 999997543322 1111 1110000


Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          783 DHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                              .    .....+..+.+++.+||+.+|++||++.||++.|++
T Consensus       233 --------~----~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  269 (269)
T cd05044         233 --------Q----KPENCPDKIYQLMTNCWAQDPSERPTFDRIQEILQN  269 (269)
T ss_pred             --------C----CcccchHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence                    0    011234577899999999999999999999999874

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=3.7e-38  Score=331.26  Aligned_cols=257  Identities=17%  Similarity=0.261  Sum_probs=203.3

Q ss_pred             HhcCCccccccCcccEEEEEEcC----CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP----SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      ++|+..+.||+|+||.||+|+..    .+..||+|.++....   ....+.|.+|+.++++++||||+++++++..++..
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   80 (267)
T cd05066           4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYT---EKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPV   80 (267)
T ss_pred             HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCC---HHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCcc
Confidence            46788899999999999999863    234799999843211   12346899999999999999999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      |+||||+++|+|.+++... ...+++.++..++.|++.|++|||   +.+++||||||+||+++.++.+|++|||+++..
T Consensus        81 ~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~h~dlkp~nili~~~~~~~l~dfg~~~~~  156 (267)
T cd05066          81 MIVTEYMENGSLDAFLRKH-DGQFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILVNSNLVCKVSDFGLSRVL  156 (267)
T ss_pred             EEEEEcCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCEeehhhchhcEEECCCCeEEeCCCCccccc
Confidence            9999999999999999753 245899999999999999999999   789999999999999999999999999999876


Q ss_pred             CCCCCCC-ccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          711 DPSKSTG-SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       711 ~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ....... ......++..|+|||++.+..++.++|||||||++||+++ |+.||.+...... ..... ....       
T Consensus       157 ~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~~~~-~~~~~-~~~~-------  227 (267)
T cd05066         157 EDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQDV-IKAIE-EGYR-------  227 (267)
T ss_pred             ccccceeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCHHHH-HHHHh-CCCc-------
Confidence            4322111 1112334578999999998889999999999999999886 9999975432211 11111 1000       


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                       .+..    ...+..+.+++.+|++.+|++||+|.++++.|+++
T Consensus       228 -~~~~----~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  266 (267)
T cd05066         228 -LPAP----MDCPAALHQLMLDCWQKDRNERPKFEQIVSILDKL  266 (267)
T ss_pred             -CCCC----CCCCHHHHHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence             0000    12245678999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=3.8e-38  Score=331.59  Aligned_cols=253  Identities=21%  Similarity=0.205  Sum_probs=188.8

Q ss_pred             ccccCcccEEEEEEcCC---CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCC
Q 003296          562 VELKTRFSTYYKAVMPS---GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       562 ~ig~g~~g~vy~~~~~~---~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~  638 (833)
                      .||+|+||.||+|...+   ...+|+|.+....   .......|.+|++++++++||||++++++|...+..++||||++
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~   78 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASA---TPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCP   78 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccC---ChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCC
Confidence            58999999999997543   4568888774221   12234578999999999999999999999999999999999999


Q ss_pred             CCChhhhhhcCCC---CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          639 KGTLFDVLHGCLE---NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       639 ~g~L~~~l~~~~~---~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      +|+|.+++.....   ...++.....++.|++.|++|||   +.+|+||||||+||++++++.+|++|||+++.......
T Consensus        79 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~  155 (269)
T cd05042          79 LGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLH---QADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDY  155 (269)
T ss_pred             CCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHH---hcCEecccccHhheEecCCCcEEEeccccccccccchh
Confidence            9999999976432   23578888999999999999999   78999999999999999999999999999875432221


Q ss_pred             CCcccccccccccccccccc-------CCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccccccccc
Q 003296          716 TGSLSTVAGSVGYIPPEYAY-------TMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (833)
                      ........+++.|+|||+..       ...++.++|||||||++|||++ |+.||................   ......
T Consensus       156 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~~  232 (269)
T cd05042         156 YITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDEQVLKQVVREQ---DIKLPK  232 (269)
T ss_pred             eeccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHhhcc---CccCCC
Confidence            11112345678899999864       2356889999999999999999 788886543322111111111   001111


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLL  830 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~  830 (833)
                      +...      ......+.+++..|+ .||++|||++||++.|.
T Consensus       233 ~~~~------~~~~~~~~~~~~~~~-~dp~~Rpt~~~v~~~l~  268 (269)
T cd05042         233 PQLD------LKYSDRWYEVMQFCW-LDPETRPTAEEVHELLT  268 (269)
T ss_pred             Cccc------ccCCHHHHHHHHHHh-cCcccccCHHHHHHHhc
Confidence            1111      122345567788888 59999999999999874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=3.4e-38  Score=334.39  Aligned_cols=252  Identities=15%  Similarity=0.206  Sum_probs=199.5

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +.|+..+.||+|+||.||+|... ++..+|+|.+....    ....+.|.+|++++++++||||++++++|..++..++|
T Consensus         5 ~~~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~----~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v   80 (282)
T cd06643           5 EFWEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKS----EEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWIL   80 (282)
T ss_pred             HHHHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCC----HHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEE
Confidence            34566788999999999999975 68889999984222    12346789999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++.+. ...++|..+..++.|+++||.|||   +.+|+||||||+||+++.++.+|++|||++......
T Consensus        81 ~e~~~~~~l~~~~~~~-~~~l~~~~~~~~~~qi~~~L~~LH---~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~  156 (282)
T cd06643          81 IEFCAGGAVDAVMLEL-ERPLTEPQIRVVCKQTLEALNYLH---ENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRT  156 (282)
T ss_pred             EEecCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCcccEEEccCCCEEEcccccccccccc
Confidence            9999999999988642 346899999999999999999999   789999999999999999999999999998765322


Q ss_pred             CCCCcccccccccccccccccc-----CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAY-----TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      .  .......||+.|+|||++.     +..++.++|||||||++|||++|+.||................  . ...   
T Consensus       157 ~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~--~-~~~---  228 (282)
T cd06643         157 I--QRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSE--P-PTL---  228 (282)
T ss_pred             c--cccccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccCHHHHHHHHhhcC--C-CCC---
Confidence            1  1223467899999999874     3457889999999999999999999997544322211111100  0 000   


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        ..    ......++.+++.+||+.||.+||++.+++++
T Consensus       229 --~~----~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  262 (282)
T cd06643         229 --AQ----PSRWSSEFKDFLKKCLEKNVDARWTTTQLLQH  262 (282)
T ss_pred             --CC----ccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence              00    01223467899999999999999999999865

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=3.5e-38  Score=329.47  Aligned_cols=250  Identities=22%  Similarity=0.307  Sum_probs=199.0

Q ss_pred             cccccCcccEEEEEEcC--CC--ceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEee
Q 003296          561 NVELKTRFSTYYKAVMP--SG--MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEY  636 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~--~~--~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey  636 (833)
                      +.||+|+||.||+|.+.  ++  ..||||.+..... .  ...++|.+|++++++++|||||++++++.. ...++||||
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~-~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~   76 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKL-S--DIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTEL   76 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCccc-H--HHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEe
Confidence            46899999999999874  23  3699999953221 1  345789999999999999999999999988 889999999


Q ss_pred             CCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCC
Q 003296          637 APKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST  716 (833)
Q Consensus       637 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~  716 (833)
                      +++|+|.+++.......++|.....++.|++.||+|||   ..+++||||||+||+++.++.+|++|||+++........
T Consensus        77 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~  153 (257)
T cd05040          77 APLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLE---SKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDH  153 (257)
T ss_pred             cCCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHH---hCCccccccCcccEEEecCCEEEeccccccccccccccc
Confidence            99999999998643356899999999999999999999   789999999999999999999999999999876432211


Q ss_pred             -CccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCCc
Q 003296          717 -GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS  794 (833)
Q Consensus       717 -~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (833)
                       .......++..|+|||++.+..++.++|||||||++|||++ |+.||....... ............        ..  
T Consensus       154 ~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~-~~~~~~~~~~~~--------~~--  222 (257)
T cd05040         154 YVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQ-ILKKIDKEGERL--------ER--  222 (257)
T ss_pred             eecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHHH-HHHHHHhcCCcC--------CC--
Confidence             11123567889999999988889999999999999999999 999996443222 111111110000        00  


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 003296          795 LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLL  830 (833)
Q Consensus       795 ~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~  830 (833)
                        ....+..+.+++.+|++.+|++||++.|+++.|.
T Consensus       223 --~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  256 (257)
T cd05040         223 --PEACPQDIYNVMLQCWAHNPADRPTFAALREFLP  256 (257)
T ss_pred             --CccCCHHHHHHHHHHCCCCcccCCCHHHHHHHhc
Confidence              0123457889999999999999999999999885

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-39  Score=339.10  Aligned_cols=251  Identities=18%  Similarity=0.274  Sum_probs=207.6

Q ss_pred             CccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeC
Q 003296          559 PLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYA  637 (833)
Q Consensus       559 ~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~  637 (833)
                      ..+.+|-|.||.||.|+++ ....||||.++..     .-..++|.+|+.+|+.++|||+|+++|+|..+..+|||.|||
T Consensus       271 MkhKLGGGQYGeVYeGvWKkyslTvAVKtLKED-----tMeveEFLkEAAvMKeikHpNLVqLLGVCT~EpPFYIiTEfM  345 (1157)
T KOG4278|consen  271 MKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-----TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPFYIITEFM  345 (1157)
T ss_pred             eeeccCCCcccceeeeeeeccceeeehhhhhhc-----chhHHHHHHHHHHHHhhcCccHHHHhhhhccCCCeEEEEecc
Confidence            4578999999999999986 5688999999422     234689999999999999999999999999999999999999


Q ss_pred             CCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCC
Q 003296          638 PKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG  717 (833)
Q Consensus       638 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~  717 (833)
                      ..|+|.+||+++....++.-..+.+|.||+.|+.||.   ...+||||+...|+|+.++..+||+|||+++++..+..+.
T Consensus       346 ~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLE---kknFIHRDLAARNCLVgEnhiVKvADFGLsRlMtgDTYTA  422 (1157)
T KOG4278|consen  346 CYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHIVKVADFGLSRLMTGDTYTA  422 (1157)
T ss_pred             cCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHH---HhhhhhhhhhhhhccccccceEEeeccchhhhhcCCceec
Confidence            9999999999887777888888899999999999999   8899999999999999999999999999999987544322


Q ss_pred             ccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCCchh
Q 003296          718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLA  796 (833)
Q Consensus       718 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  796 (833)
                      . .+..=.+.|.|||-+....++.|+|||+|||+|||+.| |-.||.+- ++.+. ......+.+++            .
T Consensus       423 H-AGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGi-dlSqV-Y~LLEkgyRM~------------~  487 (1157)
T KOG4278|consen  423 H-AGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGI-DLSQV-YGLLEKGYRMD------------G  487 (1157)
T ss_pred             c-cCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCc-cHHHH-HHHHhcccccc------------C
Confidence            1 12223567999999998899999999999999999987 88888643 33221 11121211111            1


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          797 VRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       797 ~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      +..+++.+.+|+..||++.|.+||+++|+-+.++.+
T Consensus       488 PeGCPpkVYeLMraCW~WsPsDRPsFaeiHqafEtm  523 (1157)
T KOG4278|consen  488 PEGCPPKVYELMRACWNWSPSDRPSFAEIHQAFETM  523 (1157)
T ss_pred             CCCCCHHHHHHHHHHhcCCcccCccHHHHHHHHHHH
Confidence            234567888999999999999999999999988754

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=4e-38  Score=331.54  Aligned_cols=249  Identities=25%  Similarity=0.314  Sum_probs=194.0

Q ss_pred             cccccCcccEEEEEEcC-CCc--eEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEEEEee
Q 003296          561 NVELKTRFSTYYKAVMP-SGM--SYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYLFYEY  636 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~-~~~--~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~lv~ey  636 (833)
                      ++||+|+||.||+|.+. +|.  .+|+|.++...   .....+.|.+|+++++++ +||||++++++|...+..++||||
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~   77 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYA---SKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEY   77 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccC---CHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEe
Confidence            46899999999999974 444  46888884211   112346789999999999 799999999999999999999999


Q ss_pred             CCCCChhhhhhcCC--------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceec
Q 003296          637 APKGTLFDVLHGCL--------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIG  702 (833)
Q Consensus       637 ~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~  702 (833)
                      +++|+|.++++...              ...+++.++..++.|++.|++|||   +.+++||||||+||++++++.+|++
T Consensus        78 ~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH---~~~i~H~dikp~nili~~~~~~kl~  154 (270)
T cd05047          78 APHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIA  154 (270)
T ss_pred             CCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccccceEEEcCCCeEEEC
Confidence            99999999997532              124789999999999999999999   7899999999999999999999999


Q ss_pred             cceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccc
Q 003296          703 DIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDK  781 (833)
Q Consensus       703 dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~  781 (833)
                      |||+++......   .......+..|+|||++....++.++|||||||++|||++ |+.||.+... ....... .....
T Consensus       155 dfgl~~~~~~~~---~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~-~~~~~~~-~~~~~  229 (270)
T cd05047         155 DFGLSRGQEVYV---KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC-AELYEKL-PQGYR  229 (270)
T ss_pred             CCCCccccchhh---hccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccCH-HHHHHHH-hCCCC
Confidence            999986332111   1112234667999999988889999999999999999997 9999964332 1111111 11011


Q ss_pred             ccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          782 LDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       782 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .+      ..      .....++.+++.+||+.||.+|||+.|+++.|+++
T Consensus       230 ~~------~~------~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~~~  268 (270)
T cd05047         230 LE------KP------LNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM  268 (270)
T ss_pred             CC------CC------CcCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHh
Confidence            00      00      11234678999999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=2e-38  Score=331.96  Aligned_cols=239  Identities=15%  Similarity=0.245  Sum_probs=187.7

Q ss_pred             cccccCcccEEEEEEcCC-------------CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC
Q 003296          561 NVELKTRFSTYYKAVMPS-------------GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS  627 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~~-------------~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~  627 (833)
                      +.||+|+||.||+|...+             ...||+|.+....    ....+.|.+|+.++++++|||||++++++..+
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~----~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~   76 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSH----RDISLAFFETASMMRQVSHKHIVLLYGVCVRD   76 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhh----hhHHHHHHHHHHHHHhCCCCCEeeEEEEEecC
Confidence            368999999999998532             2358899874221    22346789999999999999999999999999


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC-------ce
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE-------PQ  700 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~-------~k  700 (833)
                      ...++||||+++|+|..+++.. ...+++..+..++.|+++||+|||   +.+|+||||||+|||++.++.       +|
T Consensus        77 ~~~~lv~e~~~~~~l~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~Nill~~~~~~~~~~~~~~  152 (262)
T cd05077          77 VENIMVEEFVEFGPLDLFMHRK-SDVLTTPWKFKVAKQLASALSYLE---DKDLVHGNVCTKNILLAREGIDGECGPFIK  152 (262)
T ss_pred             CCCEEEEecccCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHhh---hCCeECCCCCcccEEEecCCccCCCCceeE
Confidence            9999999999999999988753 345899999999999999999999   789999999999999987664       79


Q ss_pred             eccceeeeeeCCCCCCCcccccccccccccccccc-CCcccccCcchhhHHHHHHHH-hCCCcccCCccHHHHHHHhhcc
Q 003296          701 IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY-TMRVTMAGNVYSFGVILLELL-TGKTAVNQGNELAKWVLRNSAQ  778 (833)
Q Consensus       701 i~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~Dv~S~Gvvl~ell-tg~~p~~~~~~~~~~~~~~~~~  778 (833)
                      ++|||++......      ....|+..|||||++. +..++.++|||||||++|||+ +|+.||....... .. .....
T Consensus       153 l~d~g~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~-~~-~~~~~  224 (262)
T cd05077         153 LSDPGIPITVLSR------QECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLAE-KE-RFYEG  224 (262)
T ss_pred             eCCCCCCccccCc------ccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcchhH-HH-HHHhc
Confidence            9999998654321      2356889999999886 466899999999999999998 5888886432111 10 00000


Q ss_pred             cccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Q 003296          779 QDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML  829 (833)
Q Consensus       779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L  829 (833)
                        .        .....    ....++.+++.+||+.||++||++.||++++
T Consensus       225 --~--------~~~~~----~~~~~~~~li~~cl~~dp~~Rp~~~~il~~~  261 (262)
T cd05077         225 --Q--------CMLVT----PSCKELADLMTHCMNYDPNQRPFFRAIMRDI  261 (262)
T ss_pred             --C--------ccCCC----CChHHHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence              0        00000    1134678999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=1.6e-38  Score=360.17  Aligned_cols=262  Identities=15%  Similarity=0.150  Sum_probs=193.7

Q ss_pred             HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCC------CcccceEEE
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS------NVMTPLAYV  624 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~------niv~~~~~~  624 (833)
                      ..+..|+..+.||+|+||+||+|+. .+++.||||+++...     ...+++..|++++++++|.      ++++++++|
T Consensus       126 ~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~-----~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~  200 (467)
T PTZ00284        126 VSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP-----KYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYF  200 (467)
T ss_pred             cCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecch-----hhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEE
Confidence            3456788999999999999999997 468899999994221     1234566788887777654      588899988


Q ss_pred             ecC-CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC------
Q 003296          625 LAS-DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK------  697 (833)
Q Consensus       625 ~~~-~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~------  697 (833)
                      ..+ +..|+||||+ +++|.+++.+  ...+++..+..|+.|++.||+|||+  ..+||||||||+|||++.++      
T Consensus       201 ~~~~~~~~iv~~~~-g~~l~~~l~~--~~~l~~~~~~~i~~qi~~aL~yLH~--~~gIiHrDlKP~NILl~~~~~~~~~~  275 (467)
T PTZ00284        201 QNETGHMCIVMPKY-GPCLLDWIMK--HGPFSHRHLAQIIFQTGVALDYFHT--ELHLMHTDLKPENILMETSDTVVDPV  275 (467)
T ss_pred             EcCCceEEEEEecc-CCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHh--cCCeecCCCCHHHEEEecCCcccccc
Confidence            765 5689999998 7799998875  3568999999999999999999993  25899999999999998765      


Q ss_pred             ----------CceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc
Q 003296          698 ----------EPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE  767 (833)
Q Consensus       698 ----------~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~  767 (833)
                                .+||+|||.+.....     .....+||+.|||||++.+..|+.++|||||||++|||++|+.||.+...
T Consensus       276 ~~~~~~~~~~~vkl~DfG~~~~~~~-----~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~  350 (467)
T PTZ00284        276 TNRALPPDPCRVRICDLGGCCDERH-----SRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTHDN  350 (467)
T ss_pred             cccccCCCCceEEECCCCccccCcc-----ccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh
Confidence                      489999998764321     22457899999999999999999999999999999999999999986554


Q ss_pred             HHHHHHHhhcccc----------------------cccccccccc----cC-CchhHHHHHHHHHHHHHhccCCCCCCCC
Q 003296          768 LAKWVLRNSAQQD----------------------KLDHILDFNV----SR-TSLAVRSQMLTVLKVAVACVSVSPEARP  820 (833)
Q Consensus       768 ~~~~~~~~~~~~~----------------------~~~~~~~~~~----~~-~~~~~~~~~~~~~~l~~~cl~~dP~~Rp  820 (833)
                      ...+.......+.                      .+....++..    .. ...........+.+|+.+||+.||++||
T Consensus       351 ~~~~~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~  430 (467)
T PTZ00284        351 LEHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRL  430 (467)
T ss_pred             HHHHHHHHHHcCCCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCC
Confidence            3222111000000                      0000000000    00 0000001134577999999999999999


Q ss_pred             CHHHHHHH
Q 003296          821 KMKSVLRM  828 (833)
Q Consensus       821 s~~evl~~  828 (833)
                      |++|+++|
T Consensus       431 ta~e~L~H  438 (467)
T PTZ00284        431 NARQMTTH  438 (467)
T ss_pred             CHHHHhcC
Confidence            99999975

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=2.9e-38  Score=335.53  Aligned_cols=265  Identities=18%  Similarity=0.210  Sum_probs=200.2

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|+..+.||+|+||.||+|+.. +|+.||||++....  ......+.+.+|++++++++||||+++++++..++..|+||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   78 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLES--EEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIF   78 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEecccc--ccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEE
Confidence            3667789999999999999974 79999999984221  12233467889999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCC-CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          635 EYAPKGTLFDVLHGCLE-NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||++ |+|.+++..... ..+++..+..++.|+++||+|||   ..+|+||||||+||++++++.+||+|||+++.....
T Consensus        79 e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~  154 (285)
T cd07861          79 EFLS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCH---SRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIP  154 (285)
T ss_pred             ecCC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCCHHHEEEcCCCcEEECcccceeecCCC
Confidence            9997 689998875332 56899999999999999999999   789999999999999999999999999999865432


Q ss_pred             CCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccc-------ccc
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL-------DHI  785 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~-------~~~  785 (833)
                      ..  ......|++.|+|||++.+. .++.++|||||||++|||+||+.||.+..................       ...
T Consensus       155 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (285)
T cd07861         155 VR--VYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQLFRIFRILGTPTEDVWPGVTSL  232 (285)
T ss_pred             cc--cccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhcchhh
Confidence            21  12334678999999987654 578999999999999999999999976543322211100000000       000


Q ss_pred             cc--ccccC---C--chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          786 LD--FNVSR---T--SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       786 ~~--~~~~~---~--~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .+  .....   .  .........++.+++.+||+.||++|||++||+.+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~~  282 (285)
T cd07861         233 PDYKNTFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKALNH  282 (285)
T ss_pred             HHHHhhccccCcchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHHHHhcC
Confidence            00  00000   0  00001134567899999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=9e-38  Score=326.93  Aligned_cols=254  Identities=19%  Similarity=0.276  Sum_probs=204.6

Q ss_pred             HHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      .+.|...+.||+|+||.||+|...++..+|+|.+....     ...+.|.+|++++++++|+||+++++++.. ...++|
T Consensus         5 ~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~-----~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~v   78 (260)
T cd05073           5 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-----MSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYII   78 (260)
T ss_pred             ccceeEEeEecCccceEEEEEEecCCccEEEEecCCCh-----hHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEEE
Confidence            34677889999999999999998888889999984221     124679999999999999999999999887 788999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++.+.....++|.++..++.|++.||+|||   ..+++||||||+||+++.++.+|++|||.+......
T Consensus        79 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~  155 (260)
T cd05073          79 TEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDN  155 (260)
T ss_pred             EEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHH---hCCccccccCcceEEEcCCCcEEECCCcceeeccCC
Confidence            99999999999998654556899999999999999999999   778999999999999999999999999999866432


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      ... ......++..|+|||++....++.++|||||||++||++| |+.||......... .. .......        ..
T Consensus       156 ~~~-~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~-~~-~~~~~~~--------~~  224 (260)
T cd05073         156 EYT-AREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVI-RA-LERGYRM--------PR  224 (260)
T ss_pred             Ccc-cccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCHHHHH-HH-HhCCCCC--------CC
Confidence            211 1123346678999999988889999999999999999999 89999754322111 11 1110000        00


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                          ....+.++.+++.+|++.+|++||++.++.+.|+.
T Consensus       225 ----~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~L~~  259 (260)
T cd05073         225 ----PENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDD  259 (260)
T ss_pred             ----cccCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence                01234578899999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=6.3e-38  Score=327.55  Aligned_cols=252  Identities=24%  Similarity=0.311  Sum_probs=202.6

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC-CceEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS-DSAYLF  633 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~-~~~~lv  633 (833)
                      +|+..+.+|+|+||.||++... +++.||+|++... . ......+.+.+|++++++++|||++++++.+... ...|+|
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~-~-~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv   78 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLR-N-ASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIV   78 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehh-h-cCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEE
Confidence            3677889999999999999974 6789999998421 1 1122356789999999999999999999988654 467999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++.......+++.++..++.|++.|++|||   +.+|+||||||+||+++.++.++++|||+++.....
T Consensus        79 ~e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH---~~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~  155 (257)
T cd08223          79 MGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLH---EKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQ  155 (257)
T ss_pred             ecccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCchhEEEecCCcEEEecccceEEeccc
Confidence            99999999999998654556899999999999999999999   789999999999999999999999999999876432


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      ..  ......|++.|+|||+..+..++.++|||||||++|||++|+.||..... .........  ....     ..   
T Consensus       156 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~-~~~~~~~~~--~~~~-----~~---  222 (257)
T cd08223         156 CD--MASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDM-NSLVYRIIE--GKLP-----PM---  222 (257)
T ss_pred             CC--ccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCH-HHHHHHHHh--cCCC-----CC---
Confidence            21  22346789999999999988899999999999999999999999975432 222211111  1110     00   


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                         ......++.+++.+|++.||++|||+.|++++
T Consensus       223 ---~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~  254 (257)
T cd08223         223 ---PKDYSPELGELIATMLSKRPEKRPSVKSILRQ  254 (257)
T ss_pred             ---ccccCHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence               11234578899999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=2.9e-38  Score=338.15  Aligned_cols=264  Identities=16%  Similarity=0.226  Sum_probs=199.9

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +.|...+.||+|+||.||+|... +++.||+|.+....   .......+.+|++++++++||||+++++++..++..++|
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv   82 (301)
T cd07873           6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEH---EEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLV   82 (301)
T ss_pred             cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEeccc---ccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEE
Confidence            35777889999999999999975 78999999984221   122345688999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||++ ++|.+++... ...+++..+..++.|+++||+|||   +.+|+||||||+||++++++.+|++|||+++.....
T Consensus        83 ~e~~~-~~l~~~l~~~-~~~~~~~~~~~~~~qi~~aL~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~  157 (301)
T cd07873          83 FEYLD-KDLKQYLDDC-GNSINMHNVKLFLFQLLRGLNYCH---RRKVLHRDLKPQNLLINERGELKLADFGLARAKSIP  157 (301)
T ss_pred             Eeccc-cCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHHHEEECCCCcEEECcCcchhccCCC
Confidence            99997 5999988754 345889999999999999999999   789999999999999999999999999998765322


Q ss_pred             CCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHH--hhcc--cccccccccc
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLR--NSAQ--QDKLDHILDF  788 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~--~~~~--~~~~~~~~~~  788 (833)
                      ..  ......+++.|+|||++.+. .++.++|||||||++|||+||+.||........+...  ....  ......+.+.
T Consensus       158 ~~--~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (301)
T cd07873         158 TK--TYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSN  235 (301)
T ss_pred             CC--cccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChhhchhhhcc
Confidence            21  12345678999999987653 4788999999999999999999999754432222111  1000  0000011000


Q ss_pred             ------cccC---Cch--hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          789 ------NVSR---TSL--AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       789 ------~~~~---~~~--~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                            ..+.   ...  ........+.+++.+|++.||.+|||++|++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~h  286 (301)
T cd07873         236 EEFKSYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMKH  286 (301)
T ss_pred             ccccccccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence                  0000   000  001224467899999999999999999999874

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=3.2e-38  Score=331.75  Aligned_cols=253  Identities=16%  Similarity=0.213  Sum_probs=199.4

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|...+.||+|+||.||+|+. .+++.||+|.++...    ......+.+|+.+++.++||||+++++++...+..++|
T Consensus         9 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~----~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv   84 (267)
T cd06645           9 EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEP----GEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWIC   84 (267)
T ss_pred             HHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCc----hhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEE
Confidence            4566678899999999999996 478999999984221    12235688999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.++++.  ...+++.+...++.|++.|+.|||   ..+|+||||||+||+++.++.+|++|||++......
T Consensus        85 ~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~  159 (267)
T cd06645          85 MEFCGGGSLQDIYHV--TGPLSESQIAYVSRETLQGLYYLH---SKGKMHRDIKGANILLTDNGHVKLADFGVSAQITAT  159 (267)
T ss_pred             EeccCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEECcceeeeEccCc
Confidence            999999999999875  346899999999999999999999   778999999999999999999999999998766432


Q ss_pred             CCCCcccccccccccccccccc---CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAY---TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                      ..  ......||+.|+|||++.   ...++.++|||||||++|||++|+.||............. .. . ..   .+..
T Consensus       160 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~~~~~~~~-~~-~-~~---~~~~  231 (267)
T cd06645         160 IA--KRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMT-KS-N-FQ---PPKL  231 (267)
T ss_pred             cc--ccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccchhhHHhhh-cc-C-CC---CCcc
Confidence            21  223457999999999874   4558899999999999999999999986443322111110 00 0 00   0000


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ..    ....+..+.+++.+|++.+|++||+++||+++
T Consensus       232 ~~----~~~~~~~~~~li~~~l~~~P~~R~~~~~ll~~  265 (267)
T cd06645         232 KD----KMKWSNSFHHFVKMALTKNPKKRPTAEKLLQH  265 (267)
T ss_pred             cc----cCCCCHHHHHHHHHHccCCchhCcCHHHHhcC
Confidence            00    00123457789999999999999999999865

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=1.5e-38  Score=335.18  Aligned_cols=239  Identities=17%  Similarity=0.254  Sum_probs=186.3

Q ss_pred             ccccCcccEEEEEEcC-------------------------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCC
Q 003296          562 VELKTRFSTYYKAVMP-------------------------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSN  616 (833)
Q Consensus       562 ~ig~g~~g~vy~~~~~-------------------------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~n  616 (833)
                      .||+|+||.||+|+..                         ....||+|.+....    .....+|.+|++++++++|||
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~----~~~~~~~~~~~~~~~~l~h~n   77 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSH----RDIALAFFETASLMSQVSHIH   77 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHH----HHHHHHHHHHHHHHhcCCCCC
Confidence            6899999999999742                         11358899884221    122467899999999999999


Q ss_pred             cccceEEEecCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC
Q 003296          617 VMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL  696 (833)
Q Consensus       617 iv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~  696 (833)
                      ||+++++|..++..++||||+++|+|.+++... ...+++..+..++.|+++||+|||   +.+|+||||||+||++++.
T Consensus        78 iv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~iiH~dlkp~Nill~~~  153 (274)
T cd05076          78 LAFVHGVCVRGSENIMVEEFVEHGPLDVCLRKE-KGRVPVAWKITVAQQLASALSYLE---DKNLVHGNVCAKNILLARL  153 (274)
T ss_pred             eeeEEEEEEeCCceEEEEecCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---cCCccCCCCCcccEEEecc
Confidence            999999999999999999999999999998753 346899999999999999999999   7899999999999999765


Q ss_pred             C-------CceeccceeeeeeCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHH-HhCCCcccCCcc
Q 003296          697 K-------EPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLEL-LTGKTAVNQGNE  767 (833)
Q Consensus       697 ~-------~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~el-ltg~~p~~~~~~  767 (833)
                      +       .+|++|||++......      ....|+..|+|||++.+ ..++.++|||||||++||| ++|+.||.....
T Consensus       154 ~~~~~~~~~~kl~d~g~~~~~~~~------~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~  227 (274)
T cd05076         154 GLAEGTSPFIKLSDPGVSFTALSR------EERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTP  227 (274)
T ss_pred             CcccCccceeeecCCccccccccc------cccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccCh
Confidence            4       3799999987644221      22457889999998865 5689999999999999999 479999974332


Q ss_pred             HHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 003296          768 LAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLL  830 (833)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~  830 (833)
                      ....  ........        ...      ....++.+++.+||+.+|++|||+.||+++|.
T Consensus       228 ~~~~--~~~~~~~~--------~~~------~~~~~~~~li~~cl~~~p~~Rps~~~il~~L~  274 (274)
T cd05076         228 SEKE--RFYEKKHR--------LPE------PSCKELATLISQCLTYEPTQRPSFRTILRDLT  274 (274)
T ss_pred             HHHH--HHHHhccC--------CCC------CCChHHHHHHHHHcccChhhCcCHHHHHHhhC
Confidence            1110  00000000        000      11235788999999999999999999999873

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=1.9e-38  Score=336.63  Aligned_cols=252  Identities=18%  Similarity=0.219  Sum_probs=202.6

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      .+|+..+.||+|+||+||+|.. ++|+.||+|++....   .....+.|.+|++++++++||||+++++++...+..++|
T Consensus         5 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv   81 (284)
T cd06620           5 EDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGA---KSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMC   81 (284)
T ss_pred             HHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecC---cchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEE
Confidence            4677788999999999999996 478999999884221   122357899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++..  ...+++..+..++.+++.|+.|||+  ..+++||||||+||++++++.++++|||++......
T Consensus        82 ~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~~i~~~l~~LH~--~~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~  157 (284)
T cd06620          82 MEFMDCGSLDRIYKK--GGPIPVEILGKIAVAVVEGLTYLYN--VHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINS  157 (284)
T ss_pred             EecCCCCCHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHH--hcCeeccCCCHHHEEECCCCcEEEccCCcccchhhh
Confidence            999999999999876  3468999999999999999999994  357999999999999999999999999998754322


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccH----------HHHHHHhhccccccc
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNEL----------AKWVLRNSAQQDKLD  783 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~----------~~~~~~~~~~~~~~~  783 (833)
                      .    .....||..|+|||++.+..++.++|||||||++||++||+.||......          ..+....        
T Consensus       158 ~----~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~--------  225 (284)
T cd06620         158 I----ADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQI--------  225 (284)
T ss_pred             c----cCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHH--------
Confidence            1    12457999999999998888999999999999999999999999743321          1111111        


Q ss_pred             ccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Q 003296          784 HILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML  829 (833)
Q Consensus       784 ~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L  829 (833)
                        ........  .....+.++.+++.+|++.||++|||+.||+++.
T Consensus       226 --~~~~~~~~--~~~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~~  267 (284)
T cd06620         226 --VQEPPPRL--PSSDFPEDLRDFVDACLLKDPTERPTPQQLCAMP  267 (284)
T ss_pred             --hhccCCCC--CchhcCHHHHHHHHHHhcCCcccCcCHHHHhcCc
Confidence              10000000  0112345688999999999999999999999863

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=1.2e-38  Score=369.76  Aligned_cols=256  Identities=18%  Similarity=0.291  Sum_probs=200.2

Q ss_pred             HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC--Cce
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS--DSA  630 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~--~~~  630 (833)
                      ...|...+.||+|+||.||+|... ++..||+|.+....  ........|.+|+.++++++|||||+++++|...  +.+
T Consensus        12 l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~--l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~l   89 (1021)
T PTZ00266         12 LNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRG--LKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKL   89 (1021)
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccc--cCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEE
Confidence            457888899999999999999974 67889999984221  1122346799999999999999999999998653  568


Q ss_pred             EEEEeeCCCCChhhhhhcCC--CCCCCHHHHHHHHHHHHHHHHhhhcCC----CCCeeecCCCccceeeCCC--------
Q 003296          631 YLFYEYAPKGTLFDVLHGCL--ENALDWASRYSIAVGVAQGLAFLHGFT----SNPILLLDLSTRNIFLKSL--------  696 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~~l~ylH~~~----~~~iiHrdlk~~Nill~~~--------  696 (833)
                      |+||||+++|+|.+++....  ...+++..++.|+.||+.||+|||...    ..+||||||||+|||++.+        
T Consensus        90 yIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~  169 (1021)
T PTZ00266         90 YILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKIT  169 (1021)
T ss_pred             EEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCcccccccc
Confidence            99999999999999997532  246999999999999999999999532    1469999999999999642        


Q ss_pred             ---------CCceeccceeeeeeCCCCCCCccccccccccccccccccC--CcccccCcchhhHHHHHHHHhCCCcccCC
Q 003296          697 ---------KEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT--MRVTMAGNVYSFGVILLELLTGKTAVNQG  765 (833)
Q Consensus       697 ---------~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~S~Gvvl~elltg~~p~~~~  765 (833)
                               ..+||+|||+++......   ......||+.|+|||++.+  ..++.++|||||||++|||+||+.||...
T Consensus       170 ~~~~n~ng~~iVKLsDFGlAr~l~~~s---~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~  246 (1021)
T PTZ00266        170 AQANNLNGRPIAKIGDFGLSKNIGIES---MAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKA  246 (1021)
T ss_pred             ccccccCCCCceEEccCCccccccccc---cccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcC
Confidence                     348999999998764322   1234679999999998854  45889999999999999999999999865


Q ss_pred             ccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          766 NELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ......+...... .        .+..     ...+.++.+++.+||+.+|.+||++.|++.+
T Consensus       247 ~~~~qli~~lk~~-p--------~lpi-----~~~S~eL~dLI~~~L~~dPeeRPSa~QlL~h  295 (1021)
T PTZ00266        247 NNFSQLISELKRG-P--------DLPI-----KGKSKELNILIKNLLNLSAKERPSALQCLGY  295 (1021)
T ss_pred             CcHHHHHHHHhcC-C--------CCCc-----CCCCHHHHHHHHHHhcCChhHCcCHHHHhcc
Confidence            5544433222111 0        0000     1123567899999999999999999999853

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=8.9e-38  Score=326.38  Aligned_cols=249  Identities=18%  Similarity=0.285  Sum_probs=196.4

Q ss_pred             cccccCcccEEEEEEcC--C--CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEee
Q 003296          561 NVELKTRFSTYYKAVMP--S--GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEY  636 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~--~--~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey  636 (833)
                      +.||+|+||.||+|+..  +  +..||+|.+......   ...+++.+|++++++++|||||++++++. .+..++||||
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~   76 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIA---AGKKEFLREASVMAQLDHPCIVRLIGVCK-GEPLMLVMEL   76 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccch---HHHHHHHHHHHHHHhcCCCCeeeEEEEEc-CCceEEEEEe
Confidence            46999999999999852  2  378999998422211   23567999999999999999999999876 4568999999


Q ss_pred             CCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCC
Q 003296          637 APKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST  716 (833)
Q Consensus       637 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~  716 (833)
                      +++|+|.+++...  ..++|..+..++.|++.|++|||   ..+++||||||+||+++.++.+|++|||+++........
T Consensus        77 ~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lh---~~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~  151 (257)
T cd05060          77 APLGPLLKYLKKR--REIPVSDLKELAHQVAMGMAYLE---SKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDY  151 (257)
T ss_pred             CCCCcHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHh---hcCeeccCcccceEEEcCCCcEEeccccccceeecCCcc
Confidence            9999999999863  36899999999999999999999   778999999999999999999999999999876433221


Q ss_pred             C-ccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCCc
Q 003296          717 G-SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS  794 (833)
Q Consensus       717 ~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (833)
                      . ......++..|+|||...+..++.++|||||||++|||++ |+.||...... +...... ......      .    
T Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~~-~~~~~~~-~~~~~~------~----  219 (257)
T cd05060         152 YRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGA-EVIAMLE-SGERLP------R----  219 (257)
T ss_pred             cccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCHH-HHHHHHH-cCCcCC------C----
Confidence            1 1112234568999999988889999999999999999998 99999754332 1111111 111100      0    


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          795 LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       795 ~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                        ....+..+.+++.+||..+|++||++.|+++.|+++
T Consensus       220 --~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~~l~~~  255 (257)
T cd05060         220 --PEECPQEIYSIMLSCWKYRPEDRPTFSELESTFRRD  255 (257)
T ss_pred             --CCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhc
Confidence              012235778999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=2.9e-38  Score=334.20  Aligned_cols=251  Identities=19%  Similarity=0.210  Sum_probs=196.4

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|+..++||+|+||.||+|+. .+++.||+|++....   .....++|.+|++++++++||||++++++|..++..++||
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   78 (279)
T cd06619           2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDI---TVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICT   78 (279)
T ss_pred             cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCC---ChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEE
Confidence            466778999999999999996 578999999984221   1123467999999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|..+.      .+++..+..++.|++.||+|||   +.+|+|+||||+||+++.++.+|++|||++.......
T Consensus        79 e~~~~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~  149 (279)
T cd06619          79 EFMDGGSLDVYR------KIPEHVLGRIAVAVVKGLTYLW---SLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSI  149 (279)
T ss_pred             ecCCCCChHHhh------cCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCCHHHEEECCCCCEEEeeCCcceeccccc
Confidence            999999997542      3688889999999999999999   7899999999999999999999999999998654322


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCc
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS  794 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (833)
                          .....||..|+|||++.+..++.++|||||||++|||++|+.||.............    .....+.+...... 
T Consensus       150 ----~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~----~~~~~~~~~~~~~~-  220 (279)
T cd06619         150 ----AKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPL----QLLQCIVDEDPPVL-  220 (279)
T ss_pred             ----ccCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchH----HHHHHHhccCCCCC-
Confidence                234679999999999998889999999999999999999999996322110000000    00000000000000 


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          795 LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       795 ~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                       .......++.+++.+|++.||++||+++|++++
T Consensus       221 -~~~~~~~~~~~li~~~l~~~P~~Rp~~~eil~~  253 (279)
T cd06619         221 -PVGQFSEKFVHFITQCMRKQPKERPAPENLMDH  253 (279)
T ss_pred             -CCCcCCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence             001233467899999999999999999999875

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=1.2e-37  Score=326.16  Aligned_cols=250  Identities=22%  Similarity=0.297  Sum_probs=202.8

Q ss_pred             cccccCcccEEEEEEcCC----CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEee
Q 003296          561 NVELKTRFSTYYKAVMPS----GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEY  636 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey  636 (833)
                      +.||+|+||.||+|....    +..||||.+.....   ....+.+.+|++++++++||||+++++++......++||||
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~---~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   77 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDAS---EEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEY   77 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccc---hhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEe
Confidence            468999999999999753    88999999953221   11357899999999999999999999999999999999999


Q ss_pred             CCCCChhhhhhcCC-------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          637 APKGTLFDVLHGCL-------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       637 ~~~g~L~~~l~~~~-------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                      +++|+|.+++....       ...++|.++..++.|+++||+|||   ..+++||||||+||++++++.+|++|||.+..
T Consensus        78 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~di~p~nili~~~~~~~l~dfg~~~~  154 (262)
T cd00192          78 MEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLA---SKKFVHRDLAARNCLVGEDLVVKISDFGLSRD  154 (262)
T ss_pred             ccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHH---cCCcccCccCcceEEECCCCcEEEcccccccc
Confidence            99999999998642       256899999999999999999999   78999999999999999999999999999987


Q ss_pred             eCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ..............+++.|+|||.+....++.++||||+||++|||++ |+.||..... .+...... .....      
T Consensus       155 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-~~~~~~~~-~~~~~------  226 (262)
T cd00192         155 VYDDDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSN-EEVLEYLR-KGYRL------  226 (262)
T ss_pred             cccccccccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCCH-HHHHHHHH-cCCCC------
Confidence            754332222344668899999999988889999999999999999999 6999975432 22111111 10000      


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLL  830 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~  830 (833)
                      ..      ....+.++.+++.+||+.+|++|||+.|++++|+
T Consensus       227 ~~------~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~  262 (262)
T cd00192         227 PK------PEYCPDELYELMLSCWQLDPEDRPTFSELVERLE  262 (262)
T ss_pred             CC------CccCChHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence            00      1122457889999999999999999999999874

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=6e-38  Score=340.69  Aligned_cols=258  Identities=20%  Similarity=0.254  Sum_probs=202.9

Q ss_pred             HhcCCccccccCcccEEEEEEcC--------CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEe
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP--------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVL  625 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~  625 (833)
                      ..|...+.||+|+||.||+|...        ++..||+|.++...   .....++|.+|+++++++ +|||||+++++|.
T Consensus        12 ~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~   88 (334)
T cd05100          12 TRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDA---TDKDLSDLVSEMEMMKMIGKHKNIINLLGACT   88 (334)
T ss_pred             hHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEccccc---CHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEc
Confidence            45778899999999999999742        23478999884211   122346899999999999 7999999999999


Q ss_pred             cCCceEEEEeeCCCCChhhhhhcCC--------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccce
Q 003296          626 ASDSAYLFYEYAPKGTLFDVLHGCL--------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNI  691 (833)
Q Consensus       626 ~~~~~~lv~ey~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Ni  691 (833)
                      .++..++||||+++|+|.+++....              ...++|.++..++.|+++||+|||   ..+|+||||||+||
T Consensus        89 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~~givH~dlkp~Ni  165 (334)
T cd05100          89 QDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLA---SQKCIHRDLAARNV  165 (334)
T ss_pred             cCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH---HCCeeccccccceE
Confidence            9999999999999999999997532              235889999999999999999999   78999999999999


Q ss_pred             eeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHH
Q 003296          692 FLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAK  770 (833)
Q Consensus       692 ll~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~  770 (833)
                      +++.++.+|++|||+++...............++..|||||++.+..++.++|||||||++|||++ |..||.+.. ..+
T Consensus       166 ll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~-~~~  244 (334)
T cd05100         166 LVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIP-VEE  244 (334)
T ss_pred             EEcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCC-HHH
Confidence            999999999999999987643222111222345678999999998889999999999999999998 888886432 222


Q ss_pred             HHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          771 WVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      +....... ....      ..      ...+.++.+++.+||+.+|++||+|.|++++|+++
T Consensus       245 ~~~~~~~~-~~~~------~~------~~~~~~l~~li~~cl~~~p~~Rps~~ell~~l~~~  293 (334)
T cd05100         245 LFKLLKEG-HRMD------KP------ANCTHELYMIMRECWHAVPSQRPTFKQLVEDLDRV  293 (334)
T ss_pred             HHHHHHcC-CCCC------CC------CCCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHH
Confidence            22221111 1000      00      12234678999999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=3e-38  Score=333.82  Aligned_cols=248  Identities=17%  Similarity=0.284  Sum_probs=199.9

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      .|...+.||+|+||.||+|... +|..||+|.+.....   ....+.+.+|++++++++||||+++++++..++..|+||
T Consensus         5 ~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (277)
T cd06642           5 LFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEA---EDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIM   81 (277)
T ss_pred             HHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccc---hHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEE
Confidence            4555678999999999999864 688999999842211   123467999999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.+++..   ..+++..+..++.|+++|+.|||   ..+++|+||||+||++++++.+|++|||+++......
T Consensus        82 e~~~~~~L~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH---~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~  155 (277)
T cd06642          82 EYLGGGSALDLLKP---GPLEETYIATILREILKGLDYLH---SERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQ  155 (277)
T ss_pred             EccCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHh---cCCeeccCCChheEEEeCCCCEEEccccccccccCcc
Confidence            99999999999864   46899999999999999999999   7899999999999999999999999999998664322


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCc
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS  794 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (833)
                      .  ......|+..|+|||++.+..++.++|||||||++|||++|+.||....... +... ... ..     .+..    
T Consensus       156 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~-~~~~-~~~-~~-----~~~~----  221 (277)
T cd06642         156 I--KRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMR-VLFL-IPK-NS-----PPTL----  221 (277)
T ss_pred             h--hhhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchhh-HHhh-hhc-CC-----CCCC----
Confidence            1  1133568999999999988889999999999999999999999986433211 1110 000 00     0001    


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          795 LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       795 ~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        ....+.++.+++.+||+.+|++||+|.||+++
T Consensus       222 --~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06642         222 --EGQYSKPFKEFVEACLNKDPRFRPTAKELLKH  253 (277)
T ss_pred             --CcccCHHHHHHHHHHccCCcccCcCHHHHHHh
Confidence              11234567899999999999999999999985

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=3.6e-38  Score=329.14  Aligned_cols=250  Identities=18%  Similarity=0.266  Sum_probs=203.7

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +.|+..+.||+|+||.||+|... +++.||+|.+... .     ..++|.+|++++++++||||+++++++..++..|++
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~-~-----~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~   76 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVE-E-----DLQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIV   76 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecH-H-----HHHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEE
Confidence            46788899999999999999985 5899999998422 1     157899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++++|.+++... ...++|..+..++.|+++|+.|||   ..+|+||||+|+||+++.++.+|++|||++......
T Consensus        77 ~e~~~~~~L~~~l~~~-~~~l~~~~~~~~~~~l~~~l~~lh---~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~  152 (256)
T cd06612          77 MEYCGAGSVSDIMKIT-NKTLTEEEIAAILYQTLKGLEYLH---SNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDT  152 (256)
T ss_pred             EecCCCCcHHHHHHhC-ccCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEECCCCcEEEcccccchhcccC
Confidence            9999999999999753 346899999999999999999999   778999999999999999999999999999876433


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      ..  ......|+..|+|||++.+..++.++|||||||++|||++|+.||..............        .....    
T Consensus       153 ~~--~~~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~~~~~~~~--------~~~~~----  218 (256)
T cd06612         153 MA--KRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMRAIFMIPN--------KPPPT----  218 (256)
T ss_pred             cc--ccccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchhhhhhhhcc--------CCCCC----
Confidence            21  12345689999999999888899999999999999999999999975433221111000        00000    


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .........++.+++.+||+.||++|||+.||+++
T Consensus       219 ~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~il~~  253 (256)
T cd06612         219 LSDPEKWSPEFNDFVKKCLVKDPEERPSAIQLLQH  253 (256)
T ss_pred             CCchhhcCHHHHHHHHHHHhcChhhCcCHHHHhcC
Confidence            00111234568899999999999999999999874

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=4e-38  Score=335.80  Aligned_cols=249  Identities=21%  Similarity=0.311  Sum_probs=202.8

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      .|...+.||.|+||.||+|.. .+|+.||+|.+...    .....+.+.+|++++++++||||+++++++...+..|+||
T Consensus        20 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~----~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   95 (296)
T cd06655          20 KYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQ----KQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVM   95 (296)
T ss_pred             eEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecc----cCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEE
Confidence            466778999999999999986 58999999998422    2233567899999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.+++..   ..++|.++..++.|++.|++|||   +.+++||||||+||+++.++.+|++|||++.......
T Consensus        96 e~~~~~~L~~~~~~---~~l~~~~~~~i~~~l~~al~~LH---~~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~  169 (296)
T cd06655          96 EYLAGGSLTDVVTE---TCMDEAQIAAVCRECLQALEFLH---ANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQ  169 (296)
T ss_pred             EecCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEccCccchhccccc
Confidence            99999999999874   35899999999999999999999   7899999999999999999999999999988654332


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCc
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS  794 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (833)
                      ..  .....|+..|+|||.+.+..++.++|||||||++|||++|+.||................   ...     ..   
T Consensus       170 ~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~~~~~~~~~~~---~~~-----~~---  236 (296)
T cd06655         170 SK--RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNG---TPE-----LQ---  236 (296)
T ss_pred             cc--CCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcC---Ccc-----cC---
Confidence            21  134578999999999988889999999999999999999999997654433222111100   000     00   


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          795 LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       795 ~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                       ........+.+++.+||+.||++||++.+++++
T Consensus       237 -~~~~~~~~~~~li~~~l~~dp~~Rpt~~~il~~  269 (296)
T cd06655         237 -NPEKLSPIFRDFLNRCLEMDVEKRGSAKELLQH  269 (296)
T ss_pred             -CcccCCHHHHHHHHHHhhcChhhCCCHHHHhhC
Confidence             011233467789999999999999999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=3.7e-38  Score=336.36  Aligned_cols=251  Identities=21%  Similarity=0.298  Sum_probs=203.3

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      ...|...+.||+|+||.||+|+. .+|+.||+|.+....    ....+.+.+|+.++++++||||++++++|..++..|+
T Consensus        18 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l   93 (297)
T cd06656          18 KKKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQ----QPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWV   93 (297)
T ss_pred             hhhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCc----cchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEE
Confidence            35678889999999999999996 589999999984221    2234678999999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||||+++|+|.+++.+   ..+++.++..++.|++.||.|||   +.+|+||||||+||+++.++.+|++|||++.....
T Consensus        94 v~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~l~~~L~~LH---~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~  167 (297)
T cd06656          94 VMEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALDFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITP  167 (297)
T ss_pred             eecccCCCCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEECcCccceEccC
Confidence            9999999999999874   35899999999999999999999   78999999999999999999999999999987643


Q ss_pred             CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      ...  ......|++.|+|||+..+..++.++|||||||++|||++|+.||........... .... .      .+.   
T Consensus       168 ~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~~~~~-~~~~-~------~~~---  234 (297)
T cd06656         168 EQS--KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYL-IATN-G------TPE---  234 (297)
T ss_pred             Ccc--CcCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcchheee-eccC-C------CCC---
Confidence            322  12345789999999999888899999999999999999999999975433211110 0000 0      000   


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                       ..........+.+++.+||+.||++||+++||+++
T Consensus       235 -~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  269 (297)
T cd06656         235 -LQNPERLSAVFRDFLNRCLEMDVDRRGSAKELLQH  269 (297)
T ss_pred             -CCCccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence             00111233457789999999999999999999874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=2.7e-38  Score=332.46  Aligned_cols=255  Identities=18%  Similarity=0.236  Sum_probs=198.8

Q ss_pred             HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      .+++.+.....||+|+||.||+|.. .++..||+|.+.....    ...+.+.+|++++++++|||||++++++..++..
T Consensus         5 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~----~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~   80 (268)
T cd06624           5 YEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDS----RYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFF   80 (268)
T ss_pred             cccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCH----HHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEE
Confidence            3455666678999999999999996 4688999999843221    2346799999999999999999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCC--CHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC-CCCceeccceee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENAL--DWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS-LKEPQIGDIELC  707 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l--~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~-~~~~ki~dfgl~  707 (833)
                      ++||||+++++|.++++... ..+  ++..+..++.|++.|++|||   ..+|+||||||+||+++. ++.+|++|||++
T Consensus        81 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~  156 (268)
T cd06624          81 KIFMEQVPGGSLSALLRSKW-GPLKDNEQTIIFYTKQILEGLKYLH---DNQIVHRDIKGDNVLVNTYSGVVKISDFGTS  156 (268)
T ss_pred             EEEEecCCCCCHHHHHHHhc-ccCCCcHHHHHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEcCCCCeEEEecchhh
Confidence            99999999999999998532 234  88889999999999999999   789999999999999986 678999999998


Q ss_pred             eeeCCCCCCCccccccccccccccccccCCc--ccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccc
Q 003296          708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYTMR--VTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHI  785 (833)
Q Consensus       708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~  785 (833)
                      ........  ......|++.|+|||++.+..  ++.++|||||||++|||++|+.||................ .     
T Consensus       157 ~~~~~~~~--~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~~~~~~~~-~-----  228 (268)
T cd06624         157 KRLAGINP--CTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQAAMFKVGMF-K-----  228 (268)
T ss_pred             eecccCCC--ccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccChhhhHhhhhhh-c-----
Confidence            76543221  123356899999999986543  7899999999999999999999997433211111000000 0     


Q ss_pred             ccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          786 LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       786 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ..+.+      +.....++.+++.+||+.+|++|||+.|++.+
T Consensus       229 ~~~~~------~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  265 (268)
T cd06624         229 IHPEI------PESLSAEAKNFILRCFEPDPDKRASAHDLLQD  265 (268)
T ss_pred             cCCCC------CcccCHHHHHHHHHHcCCCchhCCCHHHHHhC
Confidence            00011      11234567889999999999999999999875

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=4.4e-38  Score=348.55  Aligned_cols=260  Identities=15%  Similarity=0.195  Sum_probs=198.9

Q ss_pred             HHhcCCccccccCcccEEEEEEcC---CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP---SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      ...|...+.||+|+||.||+|...   .+..||||.+..         .+.+.+|++++++++|||||++++++...+..
T Consensus        91 ~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~---------~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~  161 (392)
T PHA03207         91 RMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTG---------GKTPGREIDILKTISHRAIINLIHAYRWKSTV  161 (392)
T ss_pred             cCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEeccc---------cccHHHHHHHHHhcCCCCccceeeeEeeCCEE
Confidence            456888999999999999999753   467899999831         13456899999999999999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      |+||||+. ++|.+++..  ...++|.+++.++.|++.||+|||   ..+|+||||||+|||++.++.+||+|||+++..
T Consensus       162 ~lv~e~~~-~~l~~~l~~--~~~l~~~~~~~i~~ql~~aL~~LH---~~givHrDlkp~Nill~~~~~~~l~DfG~a~~~  235 (392)
T PHA03207        162 CMVMPKYK-CDLFTYVDR--SGPLPLEQAITIQRRLLEALAYLH---GRGIIHRDVKTENIFLDEPENAVLGDFGAACKL  235 (392)
T ss_pred             EEEehhcC-CCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEcCCCCEEEccCcccccc
Confidence            99999996 689998854  456999999999999999999999   789999999999999999999999999999866


Q ss_pred             CCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc---HHHH--HHHhhcccc-ccc-
Q 003296          711 DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE---LAKW--VLRNSAQQD-KLD-  783 (833)
Q Consensus       711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~---~~~~--~~~~~~~~~-~~~-  783 (833)
                      .............||+.|+|||++.+..|+.++|||||||++|||++|+.||.+...   ....  +........ ... 
T Consensus       236 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~~  315 (392)
T PHA03207        236 DAHPDTPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQ  315 (392)
T ss_pred             CcccccccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCccccCC
Confidence            543322222356799999999999988999999999999999999999999974321   1111  000000000 000 


Q ss_pred             --------------ccccccccCCch-hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          784 --------------HILDFNVSRTSL-AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       784 --------------~~~~~~~~~~~~-~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                                    ....+....+.. .......++.+++.+|+..||++|||+.|++.+
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~~  375 (392)
T PHA03207        316 NGSTNLCKHFKQYAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQDILSL  375 (392)
T ss_pred             ccchhHHHHHHhhcccccCCccccchhhccCcchhHHHHHHHHhccChhhCCCHHHHhhC
Confidence                          000000000000 001123467789999999999999999999875

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=4.1e-38  Score=330.59  Aligned_cols=255  Identities=18%  Similarity=0.281  Sum_probs=202.1

Q ss_pred             cCCccccccCcccEEEEEEcCCCceEEEEEccccch--hhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          557 ANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDK--IFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      |...+.||+|+||.||+|...+|+.+|||.+.....  .......+.+.+|++++++++|+||++++++|.+.+..++||
T Consensus         2 ~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   81 (265)
T cd06631           2 WTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIFM   81 (265)
T ss_pred             ccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEEE
Confidence            567789999999999999988999999999842211  111122356899999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.+++..  ...+++..+..++.|++.||+|||   ..+|+|+||||+||++++++.+|++|||+++......
T Consensus        82 e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~  156 (265)
T cd06631          82 EFVPGGSISSILNR--FGPLPEPVFCKYTKQILDGVAYLH---NNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVG  156 (265)
T ss_pred             ecCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcCHHhEEECCCCeEEeccchhhHhhhhcc
Confidence            99999999999975  346889999999999999999999   7789999999999999999999999999987542211


Q ss_pred             ----CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296          715 ----STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       715 ----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                          .........|+..|+|||++.+..++.++|||||||++|||++|+.||................ ...     +..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~-----~~~  230 (265)
T cd06631         157 LHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDRLAAMFYIGAHR-GLM-----PRL  230 (265)
T ss_pred             ccccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCChHHHHHHhhhcc-CCC-----CCC
Confidence                0111234578999999999998889999999999999999999999997544332221111000 000     011


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .      .....++.+++.+||+.+|++||++.|++++
T Consensus       231 ~------~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~  262 (265)
T cd06631         231 P------DSFSAAAIDFVTSCLTRDQHERPSALQLLRH  262 (265)
T ss_pred             C------CCCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence            1      1234567899999999999999999999864

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=8.2e-38  Score=337.38  Aligned_cols=195  Identities=22%  Similarity=0.327  Sum_probs=160.8

Q ss_pred             ccccccCcccEEEEEEcC---CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec--CCceEEEE
Q 003296          560 LNVELKTRFSTYYKAVMP---SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA--SDSAYLFY  634 (833)
Q Consensus       560 ~~~ig~g~~g~vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~--~~~~~lv~  634 (833)
                      ...||+|+||+||+|...   +++.||+|++...      .....+.+|++++++++|||||++++++..  +...|+||
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~------~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~   79 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGT------GISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLF   79 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCC------CCcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEE
Confidence            368999999999999864   5688999998422      123567899999999999999999999865  45689999


Q ss_pred             eeCCCCChhhhhhcCC-------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee----CCCCCceecc
Q 003296          635 EYAPKGTLFDVLHGCL-------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL----KSLKEPQIGD  703 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~-------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill----~~~~~~ki~d  703 (833)
                      ||+. ++|.+++....       ...+++..+..++.|++.||+|||   +.+|+||||||+|||+    +..+.+||+|
T Consensus        80 e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivHrDlkp~Nil~~~~~~~~~~~kl~D  155 (317)
T cd07868          80 DYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIAD  155 (317)
T ss_pred             eccC-CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHH---hCCEEcCCCCHHHEEEecCCCCcCcEEEee
Confidence            9996 48888875321       125889999999999999999999   7889999999999999    4567899999


Q ss_pred             ceeeeeeCCCCCC-CccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccC
Q 003296          704 IELCKVIDPSKST-GSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQ  764 (833)
Q Consensus       704 fgl~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~  764 (833)
                      ||+++........ .......||+.|||||++.+. .++.++||||+||++|||++|++||..
T Consensus       156 fG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~  218 (317)
T cd07868         156 MGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHC  218 (317)
T ss_pred             cCceeccCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccC
Confidence            9999876433211 122456899999999998764 589999999999999999999999963

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=9.8e-38  Score=326.92  Aligned_cols=255  Identities=21%  Similarity=0.292  Sum_probs=206.6

Q ss_pred             HHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      .++|...+.||+|+||.||+|...+++.||||.+....     ...+++.+|++++++++||||+++++++......++|
T Consensus         5 ~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~-----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v   79 (261)
T cd05034           5 RESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGT-----MSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIV   79 (261)
T ss_pred             hhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCc-----cCHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEE
Confidence            35678889999999999999998888999999984221     2356799999999999999999999999998999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++.......++|.++..++.|++.|++|||   ..+++||||||+||++++++.+|++|||+++.....
T Consensus        80 ~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh---~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~  156 (261)
T cd05034          80 TEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLE---SRNYIHRDLAARNILVGENLVCKIADFGLARLIEDD  156 (261)
T ss_pred             EeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcchheEEEcCCCCEEECccccceeccch
Confidence            99999999999998754457899999999999999999999   788999999999999999999999999999876432


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      ... ......++..|+|||.+.+..++.++|||||||++||++| |+.||.+..... ........   ...    ... 
T Consensus       157 ~~~-~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~-~~~~~~~~---~~~----~~~-  226 (261)
T cd05034         157 EYT-AREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTNRE-VLEQVERG---YRM----PRP-  226 (261)
T ss_pred             hhh-hhhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHH-HHHHHHcC---CCC----CCC-
Confidence            111 1122345678999999988889999999999999999999 999997543221 11111110   000    000 


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                           ...+.++.+++.+|++.+|++||+++|+.+.|++
T Consensus       227 -----~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~l~~  260 (261)
T cd05034         227 -----PNCPEELYDLMLQCWDKDPEERPTFEYLQSFLED  260 (261)
T ss_pred             -----CCCCHHHHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence                 1123467899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=9.3e-38  Score=326.09  Aligned_cols=252  Identities=21%  Similarity=0.299  Sum_probs=205.2

Q ss_pred             cCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      |+..++||.|+||.||.+.. .+|..+|+|++....  ......+++.+|++++++++||||+++++++.+.+..++|||
T Consensus         2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e   79 (256)
T cd08221           2 YIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTR--LSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEME   79 (256)
T ss_pred             ceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecc--cchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEE
Confidence            67789999999999999986 578999999984221  112335678999999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      |+++|+|.+++.......+++.++..++.|+++|++|||   +.+++||||||+||++++++.+|++|||+++.......
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~  156 (256)
T cd08221          80 YANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIH---KAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYS  156 (256)
T ss_pred             ecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---hCCccccCCChHhEEEeCCCCEEECcCcceEEcccccc
Confidence            999999999998654456899999999999999999999   77899999999999999999999999999987643331


Q ss_pred             CCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCch
Q 003296          716 TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSL  795 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  795 (833)
                        ......|++.|+|||+..+..++.++|||||||++|||++|+.||...... +.......  ......          
T Consensus       157 --~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~-~~~~~~~~--~~~~~~----------  221 (256)
T cd08221         157 --MAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNPL-NLVVKIVQ--GNYTPV----------  221 (256)
T ss_pred             --cccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHc--CCCCCC----------
Confidence              223467899999999998888899999999999999999999999754322 11111111  100000          


Q ss_pred             hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Q 003296          796 AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML  829 (833)
Q Consensus       796 ~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L  829 (833)
                       ....+.++.+++.+||+.+|++||++.|+++++
T Consensus       222 -~~~~~~~~~~~i~~~l~~~p~~R~s~~~ll~~~  254 (256)
T cd08221         222 -VSVYSSELISLVHSLLQQDPEKRPTADEVLDQP  254 (256)
T ss_pred             -ccccCHHHHHHHHHHcccCcccCCCHHHHhhCc
Confidence             012345678999999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=4.4e-38  Score=328.83  Aligned_cols=240  Identities=17%  Similarity=0.313  Sum_probs=187.3

Q ss_pred             cccccCcccEEEEEEcC-C-------CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          561 NVELKTRFSTYYKAVMP-S-------GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~-~-------~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      +.||+|+||.||+|... .       ...||+|.+....    ....++|.+|+.++++++|||||++++++..++..++
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~----~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~l   76 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSH----RNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIM   76 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchh----HHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEE
Confidence            46899999999999863 2       2348888873211    2234678999999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC--------ceeccc
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE--------PQIGDI  704 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~--------~ki~df  704 (833)
                      ||||+++|+|.++++.. ...++|..++.++.|++.||+|||   +.+|+||||||+||+++.++.        +|++||
T Consensus        77 v~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~  152 (258)
T cd05078          77 VQEYVKFGSLDTYLKKN-KNLINISWKLEVAKQLAWALHFLE---DKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDP  152 (258)
T ss_pred             EEecCCCCcHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCccceEEEecccccccCCCceEEeccc
Confidence            99999999999999864 236899999999999999999999   789999999999999987766        488888


Q ss_pred             eeeeeeCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCC-CcccCCccHHHHHHHhhcccccc
Q 003296          705 ELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGK-TAVNQGNELAKWVLRNSAQQDKL  782 (833)
Q Consensus       705 gl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~-~p~~~~~~~~~~~~~~~~~~~~~  782 (833)
                      |++.....      .....|++.|+|||++.+ ..++.++|||||||++|||++|. .|+...... ...... ....  
T Consensus       153 g~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~~-~~~~~~-~~~~--  222 (258)
T cd05078         153 GISITVLP------KEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDSQ-KKLQFY-EDRH--  222 (258)
T ss_pred             ccccccCC------chhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhccHH-HHHHHH-Hccc--
Confidence            87764422      123568899999999876 45899999999999999999995 555432221 111110 0000  


Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 003296          783 DHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLL  830 (833)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~  830 (833)
                            .++.      ....++.+++.+||+.||++|||++|+++.|+
T Consensus       223 ------~~~~------~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~  258 (258)
T cd05078         223 ------QLPA------PKWTELANLINQCMDYEPDFRPSFRAIIRDLN  258 (258)
T ss_pred             ------cCCC------CCcHHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence                  0111      11246789999999999999999999999873

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=9e-38  Score=326.16  Aligned_cols=251  Identities=20%  Similarity=0.289  Sum_probs=203.6

Q ss_pred             cCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      |+..+.||+|+||.||++.. .+|+.||+|++.....  .....+++.+|++++++++||||+++++++...+..++|||
T Consensus         2 y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   79 (256)
T cd08218           2 YVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKM--SPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMD   79 (256)
T ss_pred             ceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhC--ChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEe
Confidence            67788999999999999997 4789999999842211  12234689999999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      |+++|+|.+++.......+++.++..++.|++.|++|||   +.+++|+||+|+||+++.++.++++|||++........
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~  156 (256)
T cd08218          80 YCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVE  156 (256)
T ss_pred             cCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCEEEeeccceeecCcchh
Confidence            999999999998654456899999999999999999999   78899999999999999999999999999987643221


Q ss_pred             CCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCch
Q 003296          716 TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSL  795 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  795 (833)
                        ......|++.|+|||+..+..++.++|||||||++|||++|+.||..... ...+...... . ...     .     
T Consensus       157 --~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~-~~~~~~~~~~-~-~~~-----~-----  221 (256)
T cd08218         157 --LARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGNM-KNLVLKIIRG-S-YPP-----V-----  221 (256)
T ss_pred             --hhhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCCCH-HHHHHHHhcC-C-CCC-----C-----
Confidence              11235689999999999888899999999999999999999999975432 2222111111 0 000     0     


Q ss_pred             hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          796 AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       796 ~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                       ......++.+++.+||+.+|++||+|.||+++
T Consensus       222 -~~~~~~~~~~li~~~l~~~p~~Rp~~~~vl~~  253 (256)
T cd08218         222 -SSHYSYDLRNLVSQLFKRNPRDRPSVNSILEK  253 (256)
T ss_pred             -cccCCHHHHHHHHHHhhCChhhCcCHHHHhhC
Confidence             11234567899999999999999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=9.4e-38  Score=331.79  Aligned_cols=264  Identities=15%  Similarity=0.183  Sum_probs=202.0

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      .|+....||+|+||.||+|... +|+.||+|++....  ......+.|.+|++++++++||||+++++++...+..++||
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~--~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   79 (286)
T cd07847           2 KYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESE--DDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVF   79 (286)
T ss_pred             ceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecc--cCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEE
Confidence            4777889999999999999975 68999999984221  11223467899999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||++++.|..+...  ...++|..+..++.|++.||+|||   ..+|+||||||+||+++.++.+|++|||++.......
T Consensus        80 e~~~~~~l~~~~~~--~~~~~~~~~~~~~~ql~~~l~~LH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~  154 (286)
T cd07847          80 EYCDHTVLNELEKN--PRGVPEHLIKKIIWQTLQAVNFCH---KHNCIHRDVKPENILITKQGQIKLCDFGFARILTGPG  154 (286)
T ss_pred             eccCccHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCChhhEEEcCCCcEEECccccceecCCCc
Confidence            99999988887764  346899999999999999999999   7899999999999999999999999999998765432


Q ss_pred             CCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccc------------
Q 003296          715 STGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDK------------  781 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~------------  781 (833)
                      .  ......|+..|+|||++.+ ..++.++|||||||++|||++|+.||.+.................            
T Consensus       155 ~--~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (286)
T cd07847         155 D--DYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIRKTLGDLIPRHQQIFSTNQ  232 (286)
T ss_pred             c--cccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChHHhhhccccc
Confidence            1  1123568899999999875 458899999999999999999999997554332211110000000            


Q ss_pred             -ccccccccccCC---chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          782 -LDHILDFNVSRT---SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       782 -~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                       ......+.....   ..........+.+++.+||+.||++||++.|++.+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~  283 (286)
T cd07847         233 FFKGLSIPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLEH  283 (286)
T ss_pred             ccccccCCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhcC
Confidence             000000000000   00011234578899999999999999999999865

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=8.4e-38  Score=334.72  Aligned_cols=257  Identities=21%  Similarity=0.322  Sum_probs=199.9

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCc----eEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGM----SYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD  628 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~----~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~  628 (833)
                      ..+|+..+.||+|+||.||+|.. .+|.    .||+|.+.....   .....+|.+|+.++++++|||||+++|+|... 
T Consensus         6 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-   81 (303)
T cd05110           6 ETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTG---PKANVEFMDEALIMASMDHPHLVRLLGVCLSP-   81 (303)
T ss_pred             hhhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCC---HHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-
Confidence            45677889999999999999986 3454    478888842211   12234789999999999999999999999754 


Q ss_pred             ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeee
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK  708 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~  708 (833)
                      ..++|+||+++|+|.+++... ...+++..+..++.|++.||+|||   +.+|+||||||+||++++++.+|++|||+++
T Consensus        82 ~~~~v~e~~~~g~l~~~~~~~-~~~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~  157 (303)
T cd05110          82 TIQLVTQLMPHGCLLDYVHEH-KDNIGSQLLLNWCVQIAKGMMYLE---ERRLVHRDLAARNVLVKSPNHVKITDFGLAR  157 (303)
T ss_pred             CceeeehhcCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHh---hcCeeccccccceeeecCCCceEEccccccc
Confidence            567999999999999998753 335899999999999999999999   7899999999999999999999999999998


Q ss_pred             eeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccccccccc
Q 003296          709 VIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       709 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (833)
                      ...............++..|+|||++.+..++.++|||||||++|||++ |+.||.+... ..+.. .........    
T Consensus       158 ~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~-~~~~~-~~~~~~~~~----  231 (303)
T cd05110         158 LLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPT-REIPD-LLEKGERLP----  231 (303)
T ss_pred             cccCcccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCH-HHHHH-HHHCCCCCC----
Confidence            7643322212223456789999999988889999999999999999997 8999964321 11111 111111100    


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                          ..    ......+.+++.+||..+|++||+++|+++.|+++
T Consensus       232 ----~~----~~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~  268 (303)
T cd05110         232 ----QP----PICTIDVYMVMVKCWMIDADSRPKFKELAAEFSRM  268 (303)
T ss_pred             ----CC----CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence                00    01234678899999999999999999999998864

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=2.2e-38  Score=346.50  Aligned_cols=193  Identities=17%  Similarity=0.226  Sum_probs=166.4

Q ss_pred             HHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      ....+|+..+.||+|+||.||+|+.. ++..||+|... .         .....|+.++++++|||||++++++...+..
T Consensus        63 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~-~---------~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  132 (357)
T PHA03209         63 VASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQ-K---------GTTLIEAMLLQNVNHPSVIRMKDTLVSGAIT  132 (357)
T ss_pred             hhhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCC-c---------cccHHHHHHHHhCCCCCCcChhheEEeCCee
Confidence            34457899999999999999999975 67889999762 1         2245799999999999999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      ++||||+. |+|.+++... ...++|..+..|+.|++.||+|||   ..+||||||||+|||++.++.+||+|||+++..
T Consensus       133 ~lv~e~~~-~~l~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~  207 (357)
T PHA03209        133 CMVLPHYS-SDLYTYLTKR-SRPLPIDQALIIEKQILEGLRYLH---AQRIIHRDVKTENIFINDVDQVCIGDLGAAQFP  207 (357)
T ss_pred             EEEEEccC-CcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEEecCcccccc
Confidence            99999995 6999988753 346899999999999999999999   789999999999999999999999999999754


Q ss_pred             CCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcc
Q 003296          711 DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAV  762 (833)
Q Consensus       711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~  762 (833)
                      ....   ......||+.|+|||++.+..++.++|||||||++|||+++..|+
T Consensus       208 ~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~  256 (357)
T PHA03209        208 VVAP---AFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTI  256 (357)
T ss_pred             ccCc---ccccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCcc
Confidence            3221   223567999999999999989999999999999999999976554

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.8e-37  Score=322.91  Aligned_cols=250  Identities=20%  Similarity=0.276  Sum_probs=198.8

Q ss_pred             cccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCCCC
Q 003296          561 NVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKG  640 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~g  640 (833)
                      +.||+|+||.||+|...+++.||+|++......   ...+.|.+|++++++++||||+++++++......++||||++++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~   77 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPP---DLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGG   77 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCH---HHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCC
Confidence            468999999999999877999999998422111   23468999999999999999999999999999999999999999


Q ss_pred             ChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCccc
Q 003296          641 TLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLS  720 (833)
Q Consensus       641 ~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~  720 (833)
                      +|.+++... ...+++..+..++.+++.|++|||   ..+++||||||+||+++.++.+|++|||+++............
T Consensus        78 ~l~~~l~~~-~~~~~~~~~~~~~~~~~~~l~~lH---~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~  153 (251)
T cd05041          78 SLLTFLRKK-KNRLTVKKLLQMSLDAAAGMEYLE---SKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDG  153 (251)
T ss_pred             cHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCEehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccc
Confidence            999999753 335889999999999999999999   7889999999999999999999999999998654222111111


Q ss_pred             cccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHH
Q 003296          721 TVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRS  799 (833)
Q Consensus       721 ~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  799 (833)
                      ...++..|+|||++.+..++.++|||||||++|||+| |..||....... ...... ....        ...    ...
T Consensus       154 ~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~~-~~~~~~-~~~~--------~~~----~~~  219 (251)
T cd05041         154 LKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQQ-TRERIE-SGYR--------MPA----PQL  219 (251)
T ss_pred             cCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCCHHH-HHHHHh-cCCC--------CCC----Ccc
Confidence            2334677999999988889999999999999999999 888886543211 111110 0000        000    112


Q ss_pred             HHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          800 QMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       800 ~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                      .+.++.+++.+|+..+|++|||+.|+++.|+.
T Consensus       220 ~~~~~~~li~~~l~~~p~~Rp~~~ell~~l~~  251 (251)
T cd05041         220 CPEEIYRLMLQCWAYDPENRPSFSEIYNELQI  251 (251)
T ss_pred             CCHHHHHHHHHHhccChhhCcCHHHHHHHhhC
Confidence            34578899999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=100.00  E-value=7.4e-38  Score=332.22  Aligned_cols=264  Identities=18%  Similarity=0.229  Sum_probs=201.2

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|+..+.||+|+||.||+|+.. +|+.||||++....  ......+.+.+|++++++++||||+++++++.+.+..++||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   78 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDT--ETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVF   78 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccc--cccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEe
Confidence            3677889999999999999974 78999999984221  12223467899999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||++ ++|.+++.......+++..+..++.|+++||+|||   ..+++||||||+||++++++.+|++|||+++......
T Consensus        79 e~~~-~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh---~~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~  154 (284)
T cd07860          79 EFLH-QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV  154 (284)
T ss_pred             eccc-cCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEEeeccchhhcccCc
Confidence            9996 68999987655567899999999999999999999   7889999999999999999999999999987654322


Q ss_pred             CCCccccccccccccccccccCCc-ccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc----
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMR-VTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN----  789 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  789 (833)
                      .  ......+++.|+|||++.+.. ++.++|||||||++|||+||+.||.+.............. ........+.    
T Consensus       155 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  231 (284)
T cd07860         155 R--TYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTL-GTPDEVVWPGVTSL  231 (284)
T ss_pred             c--ccccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHh-CCCChhhhhhhhHH
Confidence            1  123346789999999887644 6889999999999999999999997554332221111100 0000000000    


Q ss_pred             ------cc---CCc--hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          790 ------VS---RTS--LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       790 ------~~---~~~--~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                            ..   ...  ........++.+++.+|++.||++|||++|++++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~  281 (284)
T cd07860         232 PDYKPSFPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAALAH  281 (284)
T ss_pred             HHHHhhcccccccCHHHHcccCCHHHHHHHHHhcCCCcccCCCHHHHhcC
Confidence                  00   000  0001123467789999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=1.5e-37  Score=326.46  Aligned_cols=254  Identities=19%  Similarity=0.264  Sum_probs=196.7

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccch-hhhccChhHHHHHHHHHhcCCCCCcccceEEEecC--CceE
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDK-IFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS--DSAY  631 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~--~~~~  631 (833)
                      +|...+.+|+|+||.||+|.. .+|..||+|++..... .......+.+.+|+.++++++||||+++++++...  ...+
T Consensus         3 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   82 (266)
T cd06651           3 NWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLT   82 (266)
T ss_pred             CccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEE
Confidence            577889999999999999997 4789999999843221 11112345789999999999999999999998753  5689


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      +||||+++++|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+|++|||+++...
T Consensus        83 l~~e~~~~~~L~~~l~~--~~~l~~~~~~~~~~qi~~~l~~LH---~~~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~  157 (266)
T cd06651          83 IFMEYMPGGSVKDQLKA--YGALTESVTRKYTRQILEGMSYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQ  157 (266)
T ss_pred             EEEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEccCCCccccc
Confidence            99999999999999975  345899999999999999999999   7889999999999999999999999999987653


Q ss_pred             CCCC-CCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296          712 PSKS-TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       712 ~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                      .... ........|+..|+|||++.+..++.++|||||||++|||++|+.||.......... ......      ..+.+
T Consensus       158 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~~~~~~~-~~~~~~------~~~~~  230 (266)
T cd06651         158 TICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEAMAAIF-KIATQP------TNPQL  230 (266)
T ss_pred             cccccCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccccchHHHHH-HHhcCC------CCCCC
Confidence            2111 111123568999999999988889999999999999999999999997543322211 111110      01111


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      +      ......+.+++ +||..+|++||+|+||++|
T Consensus       231 ~------~~~~~~~~~li-~~~~~~p~~Rp~~~eil~h  261 (266)
T cd06651         231 P------SHISEHARDFL-GCIFVEARHRPSAEELLRH  261 (266)
T ss_pred             c------hhcCHHHHHHH-HHhcCChhhCcCHHHHhcC
Confidence            1      12233455565 7888999999999999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=1.9e-37  Score=326.53  Aligned_cols=256  Identities=20%  Similarity=0.278  Sum_probs=201.2

Q ss_pred             HhcCCccccccCcccEEEEEEcCC----CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPS----GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      .+|...+.||+|+||.||+|+..+    ...||||.......   ....+.|.+|+.++++++||||+++++++.. +..
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~---~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~   81 (270)
T cd05056           6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTS---PSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NPV   81 (270)
T ss_pred             hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCC---HHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CCc
Confidence            456778899999999999998643    35689998842221   1234679999999999999999999999875 567


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      ++||||+++|+|.+++... ...++|..+..++.|++.||+|||   +.+++||||||+||+++.++.+|++|||+++..
T Consensus        82 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~l~~~l~~lH---~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~  157 (270)
T cd05056          82 WIVMELAPLGELRSYLQVN-KYSLDLASLILYSYQLSTALAYLE---SKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYL  157 (270)
T ss_pred             EEEEEcCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccChheEEEecCCCeEEccCceeeec
Confidence            8999999999999999753 235899999999999999999999   788999999999999999999999999999876


Q ss_pred             CCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          711 DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      ...... ......++..|+|||++....++.++|||||||++||+++ |+.||.+....... ... ......      .
T Consensus       158 ~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~-~~~-~~~~~~------~  228 (270)
T cd05056         158 EDESYY-KASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNNDVI-GRI-ENGERL------P  228 (270)
T ss_pred             ccccce-ecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHHHHH-HHH-HcCCcC------C
Confidence            433211 1123345678999999888889999999999999999996 99999754432211 111 111111      0


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR  833 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r  833 (833)
                      ..      ...+.++.+++.+|+..+|++|||+.|++++|++++
T Consensus       229 ~~------~~~~~~~~~li~~~l~~~P~~Rpt~~~~~~~l~~~~  266 (270)
T cd05056         229 MP------PNCPPTLYSLMTKCWAYDPSKRPRFTELKAQLSDIL  266 (270)
T ss_pred             CC------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence            00      122457888999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-37  Score=328.54  Aligned_cols=249  Identities=18%  Similarity=0.283  Sum_probs=202.4

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      .|...+.+|.|+||.||+|... +|+.||+|.+....   .......+.+|++++++++||||+++++++.++...|+|+
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   78 (274)
T cd06609           2 LFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEE---AEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIM   78 (274)
T ss_pred             hhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccc---cchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEE
Confidence            4667789999999999999974 78999999984221   1223467899999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.++++..   .+++..+..++.|++.|+.|||   ..+++||||||+||++++++.++++|||+++......
T Consensus        79 e~~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~~l~~lh---~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~  152 (274)
T cd06609          79 EYCGGGSCLDLLKPG---KLDETYIAFILREVLLGLEYLH---EEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTM  152 (274)
T ss_pred             EeeCCCcHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEEcccccceeecccc
Confidence            999999999999853   6899999999999999999999   7889999999999999999999999999998775432


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCc
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS  794 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (833)
                      .  ......|++.|+|||++.+..++.++|||||||++|||+||+.||....... ...... . ....     ....  
T Consensus       153 ~--~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~~-~~~~~~-~-~~~~-----~~~~--  220 (274)
T cd06609         153 S--KRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHPMR-VLFLIP-K-NNPP-----SLEG--  220 (274)
T ss_pred             c--ccccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCchHH-HHHHhh-h-cCCC-----CCcc--
Confidence            1  2234678999999999998889999999999999999999999997543221 111100 0 0000     0000  


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          795 LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       795 ~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                         ...+.++.+++.+||..||++|||++|++++
T Consensus       221 ---~~~~~~~~~~l~~~l~~~p~~Rpt~~~il~~  251 (274)
T cd06609         221 ---NKFSKPFKDFVSLCLNKDPKERPSAKELLKH  251 (274)
T ss_pred             ---cccCHHHHHHHHHHhhCChhhCcCHHHHhhC
Confidence               0134467889999999999999999999875

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=2.6e-37  Score=322.73  Aligned_cols=251  Identities=20%  Similarity=0.274  Sum_probs=201.6

Q ss_pred             hcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      +|+..+.||+|+||.||+|...++..+|+|.+...     .....+|.+|++++++++||||+++++++......++|||
T Consensus         5 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~-----~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e   79 (256)
T cd05112           5 ELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREG-----AMSEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFE   79 (256)
T ss_pred             HeEEEeeecCcccceEEEEEEeCCCeEEEEECCCC-----CCCHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEE
Confidence            56677899999999999999877889999998422     1234679999999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      |+++|+|.++++.. ...++|..+..++.|++.|++|||   +.+++||||||+||+++.++.+|++|||+++.......
T Consensus        80 ~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~  155 (256)
T cd05112          80 FMEHGCLSDYLRAQ-RGKFSQETLLGMCLDVCEGMAYLE---SSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQY  155 (256)
T ss_pred             cCCCCcHHHHHHhC-ccCCCHHHHHHHHHHHHHHHHHHH---HCCccccccccceEEEcCCCeEEECCCcceeecccCcc
Confidence            99999999999753 235899999999999999999999   77899999999999999999999999999886533221


Q ss_pred             CCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCCc
Q 003296          716 TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS  794 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (833)
                      . ......++.+|+|||++.+..++.++|||||||++|||++ |+.||..... .......... .   ....+.     
T Consensus       156 ~-~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~-~~~~~~~~~~-~---~~~~~~-----  224 (256)
T cd05112         156 T-SSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSN-SEVVETINAG-F---RLYKPR-----  224 (256)
T ss_pred             c-ccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCH-HHHHHHHhCC-C---CCCCCC-----
Confidence            1 1122345678999999988889999999999999999998 9999974332 2222111100 0   001111     


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 003296          795 LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLL  830 (833)
Q Consensus       795 ~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~  830 (833)
                          ..+.++.+++.+||+.+|++|||+.||+++|+
T Consensus       225 ----~~~~~~~~l~~~~l~~~p~~Rp~~~~~l~~l~  256 (256)
T cd05112         225 ----LASQSVYELMQHCWKERPEDRPSFSLLLHQLA  256 (256)
T ss_pred             ----CCCHHHHHHHHHHcccChhhCCCHHHHHHhhC
Confidence                12356889999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=2.2e-37  Score=322.84  Aligned_cols=247  Identities=19%  Similarity=0.284  Sum_probs=199.6

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      ++|...+.||+|+||.||+|.. +++.||+|++...      ...+.|.+|+.++++++||||+++++++..+ ..++||
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~------~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~v~   77 (254)
T cd05083           6 QKLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCD------VTAQAFLEETAVMTKLHHKNLVRLLGVILHN-GLYIVM   77 (254)
T ss_pred             HHceeeeeeccCCCCceEeccc-CCCceEEEeecCc------chHHHHHHHHHHHHhCCCCCcCeEEEEEcCC-CcEEEE
Confidence            4678889999999999999975 7888999998421      1246799999999999999999999998654 579999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.+++.......+++.++..++.|++.|++|||   +.+++||||||+||+++.++.+|++|||+++......
T Consensus        78 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~  154 (254)
T cd05083          78 ELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLE---SKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGV  154 (254)
T ss_pred             ECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccCcceEEEcCCCcEEECCCccceeccccC
Confidence            9999999999998654556899999999999999999999   7899999999999999999999999999987643221


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                           .....+..|+|||++.+..++.++|||||||++|||++ |+.||..... ....... ......    +  .   
T Consensus       155 -----~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~-~~~~~~~-~~~~~~----~--~---  218 (254)
T cd05083         155 -----DNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSL-KEVKECV-EKGYRM----E--P---  218 (254)
T ss_pred             -----CCCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCH-HHHHHHH-hCCCCC----C--C---
Confidence                 22344678999999988889999999999999999998 9999974432 2221111 110000    0  0   


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                         ....+.++.+++.+||+.+|++||++++++..|++
T Consensus       219 ---~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  253 (254)
T cd05083         219 ---PEGCPADVYVLMTSCWETEPKKRPSFHKLREKLEK  253 (254)
T ss_pred             ---CCcCCHHHHHHHHHHcCCChhhCcCHHHHHHHHcc
Confidence               01234567899999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=1.7e-37  Score=330.73  Aligned_cols=252  Identities=16%  Similarity=0.231  Sum_probs=199.7

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +.|+..+.||+|+||.||+|+.. +|+.||+|.+....    ....+.|.+|++++++++||||+++++++..++..++|
T Consensus        12 ~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   87 (292)
T cd06644          12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKS----EEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIM   87 (292)
T ss_pred             hhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCC----HHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEE
Confidence            45677789999999999999974 68999999984221    22356789999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|..++.+. ...+++..+..++.|++.|++|||   ..+|+||||||+||+++.++.+||+|||++......
T Consensus        88 ~e~~~~~~l~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~  163 (292)
T cd06644          88 IEFCPGGAVDAIMLEL-DRGLTEPQIQVICRQMLEALQYLH---SMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKT  163 (292)
T ss_pred             EecCCCCcHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHh---cCCeeecCCCcceEEEcCCCCEEEccCccceecccc
Confidence            9999999999887643 246899999999999999999999   789999999999999999999999999998764322


Q ss_pred             CCCCcccccccccccccccccc-----CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAY-----TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ..  ......|++.|+|||++.     ...++.++|||||||++|||++|+.||........ ....... ..      +
T Consensus       164 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~-~~~~~~~-~~------~  233 (292)
T cd06644         164 LQ--RRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRV-LLKIAKS-EP------P  233 (292)
T ss_pred             cc--ccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccccHHHH-HHHHhcC-CC------c
Confidence            11  123457899999999885     34478899999999999999999999975433221 1111111 00      0


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ....    ....+.++.+++.+||+.||++||++.|++++
T Consensus       234 ~~~~----~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  269 (292)
T cd06644         234 TLSQ----PSKWSMEFRDFLKTALDKHPETRPSAAQLLEH  269 (292)
T ss_pred             cCCC----CcccCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence            0000    11234467899999999999999999999874

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=5.6e-38  Score=333.13  Aligned_cols=270  Identities=21%  Similarity=0.270  Sum_probs=204.4

Q ss_pred             HhcCCccccccCcccEEEEEEcC-----CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec--C
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-----SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA--S  627 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~--~  627 (833)
                      +.|...+.||+|+||.||+|+..     ++..||||++......   ...+.|.+|++++++++||||+++++++..  +
T Consensus         4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~---~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~   80 (284)
T cd05038           4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEE---QHRSDFEREIEILRTLDHENIVKYKGVCEKPGG   80 (284)
T ss_pred             hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccch---HHHHHHHHHHHHHHhCCCCChheEEeeeecCCC
Confidence            35667789999999999999853     4789999999533221   235689999999999999999999999987  5


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                      ...++||||+++|+|.+++... ...++|..+..++.|++.||+|||   ..+++||||||+||+++.++.+|++|||.+
T Consensus        81 ~~~~lv~e~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~  156 (284)
T cd05038          81 RSLRLIMEYLPSGSLRDYLQRH-RDQINLKRLLLFSSQICKGMDYLG---SQRYIHRDLAARNILVESEDLVKISDFGLA  156 (284)
T ss_pred             CceEEEEecCCCCCHHHHHHhC-ccccCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHhEEEcCCCCEEEcccccc
Confidence            5799999999999999999864 235999999999999999999999   789999999999999999999999999999


Q ss_pred             eeeCCCCCCC-ccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHH-HHHHHhhc--cccccc
Q 003296          708 KVIDPSKSTG-SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELA-KWVLRNSA--QQDKLD  783 (833)
Q Consensus       708 ~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~-~~~~~~~~--~~~~~~  783 (833)
                      .......... ......++..|+|||+..+..++.++|||||||++|||+||+.|+....... .+......  ......
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  236 (284)
T cd05038         157 KVLPEDKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLL  236 (284)
T ss_pred             cccccCCcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHHHH
Confidence            8765322111 1112345667999999988889999999999999999999999986322110 00000000  000000


Q ss_pred             ccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296          784 HILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR  833 (833)
Q Consensus       784 ~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r  833 (833)
                      ..+........  ....+.++.+++.+||+.+|++||||.||+++|+++|
T Consensus       237 ~~~~~~~~~~~--~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i~  284 (284)
T cd05038         237 ELLKEGERLPR--PPSCPDEVYDLMKLCWEAEPQDRPSFADLILIVDRLR  284 (284)
T ss_pred             HHHHcCCcCCC--CccCCHHHHHHHHHHhccChhhCCCHHHHHHHHhhcC
Confidence            00000110000  1123357889999999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.1e-37  Score=326.48  Aligned_cols=256  Identities=21%  Similarity=0.293  Sum_probs=201.5

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCc----eEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGM----SYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS  629 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~----~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~  629 (833)
                      ..|...+.||+|+||.||+|... +|.    .||+|.+.....   .....++.+|+.++++++||||++++++|.. +.
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~   82 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETS---PKANKEILDEAYVMASVDHPHVVRLLGICLS-SQ   82 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCC---HHHHHHHHHHHHHHHhCCCCCcceEEEEEec-Cc
Confidence            45777899999999999999864 343    589998842211   2234678999999999999999999999987 78


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                      .++||||+++|+|.++++.. ...++|..+..++.|++.|++|||   +.+|+||||||+||++++++.+|++|||+++.
T Consensus        83 ~~~v~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~di~p~nil~~~~~~~kL~dfg~~~~  158 (279)
T cd05057          83 VQLITQLMPLGCLLDYVRNH-KDNIGSQYLLNWCVQIAKGMSYLE---EKRLVHRDLAARNVLVKTPQHVKITDFGLAKL  158 (279)
T ss_pred             eEEEEecCCCCcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHH---hCCEEecccCcceEEEcCCCeEEECCCccccc
Confidence            99999999999999999864 235899999999999999999999   78999999999999999999999999999987


Q ss_pred             eCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ..............++..|+|||......++.++|||||||++||+++ |+.||.+.. ..++..... .....      
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~-~~~~~~~~~-~~~~~------  230 (279)
T cd05057         159 LDVDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIP-AVEIPDLLE-KGERL------  230 (279)
T ss_pred             ccCcccceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHHh-CCCCC------
Confidence            653322211122334678999999988889999999999999999999 999997543 222221111 11100      


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                        ..+    ......+.+++.+||..||++||++.++++.|.++
T Consensus       231 --~~~----~~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~~l~~~  268 (279)
T cd05057         231 --PQP----PICTIDVYMVLVKCWMIDAESRPTFKELINEFSKM  268 (279)
T ss_pred             --CCC----CCCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence              000    01224577899999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=1.6e-37  Score=326.48  Aligned_cols=258  Identities=20%  Similarity=0.312  Sum_probs=205.3

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|+..+.+|.|+||.||+|.. .++..+|+|++.....   ....+.+.+|++++++++||||+++++.+..++..++||
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~   78 (267)
T cd06610           2 DYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKC---QTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVM   78 (267)
T ss_pred             cceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCc---chHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEE
Confidence            577889999999999999996 4788999999842211   114578999999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCC-CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          635 EYAPKGTLFDVLHGCLE-NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||+++++|.++++.... ..+++.....++.|++.|++|||   +.+|+||||||+||++++++.+|++|||++......
T Consensus        79 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh---~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~  155 (267)
T cd06610          79 PYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLH---SNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADG  155 (267)
T ss_pred             eccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHhEEEcCCCCEEEcccchHHHhccC
Confidence            99999999999976432 46899999999999999999999   789999999999999999999999999998766543


Q ss_pred             CCCC--ccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296          714 KSTG--SLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       714 ~~~~--~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                      ....  ......|+..|+|||++... .++.++|||||||++|||++|+.||...................        .
T Consensus       156 ~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~--------~  227 (267)
T cd06610         156 GDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPPMKVLMLTLQNDPPS--------L  227 (267)
T ss_pred             ccccccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccChhhhHHHHhcCCCCC--------c
Confidence            2211  12345789999999998766 68999999999999999999999997544322221111111000        0


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .. .......+.++.+++.+||+.||++||++.|++++
T Consensus       228 ~~-~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~~  264 (267)
T cd06610         228 ET-GADYKKYSKSFRKMISLCLQKDPSKRPTAEELLKH  264 (267)
T ss_pred             CC-ccccccccHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence            00 00012345678899999999999999999999875

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=2.3e-37  Score=325.21  Aligned_cols=253  Identities=19%  Similarity=0.295  Sum_probs=200.9

Q ss_pred             cCCccccccCcccEEEEEEc-CCCceEEEEEccccchhh-----hccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          557 ANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIF-----QLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~-----~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      |.....||+|+||.||+|.. .+++.||+|.+.......     .....+.+.+|++++++++||||+++++++...+..
T Consensus         2 ~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   81 (267)
T cd06628           2 WIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHL   81 (267)
T ss_pred             ccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCcc
Confidence            45567899999999999987 468999999884321111     111235788999999999999999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      ++||||+++++|.+++..  ...+++..+..++.|++.||+|||   +.+++||||||+||++++++.+|++|||.++..
T Consensus        82 ~lv~e~~~~~~L~~~l~~--~~~l~~~~~~~~~~~l~~~l~~lH---~~~ivH~di~p~nil~~~~~~~~l~dfg~~~~~  156 (267)
T cd06628          82 NIFLEYVPGGSVAALLNN--YGAFEETLVRNFVRQILKGLNYLH---NRGIIHRDIKGANILVDNKGGIKISDFGISKKL  156 (267)
T ss_pred             EEEEEecCCCCHHHHHHh--ccCccHHHHHHHHHHHHHHHHHHH---hcCcccccCCHHHEEEcCCCCEEecccCCCccc
Confidence            999999999999999976  346899999999999999999999   788999999999999999999999999999876


Q ss_pred             CCCCCCC----ccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc
Q 003296          711 DPSKSTG----SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL  786 (833)
Q Consensus       711 ~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  786 (833)
                      .......    ......|+..|+|||++.+..++.++||||+||++|||++|+.||.+...........    .    ..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~----~----~~  228 (267)
T cd06628         157 EANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQLQAIFKIG----E----NA  228 (267)
T ss_pred             ccccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCccHHHHHHHHh----c----cC
Confidence            4221110    1123568899999999988889999999999999999999999997544322211100    0    00


Q ss_pred             cccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          787 DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       787 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .+...      ...+..+.+++.+||+.||++||++.||+++
T Consensus       229 ~~~~~------~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  264 (267)
T cd06628         229 SPEIP------SNISSEAIDFLEKTFEIDHNKRPTAAELLKH  264 (267)
T ss_pred             CCcCC------cccCHHHHHHHHHHccCCchhCcCHHHHhhC
Confidence            11111      1234567889999999999999999999874

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=1.9e-37  Score=327.14  Aligned_cols=258  Identities=19%  Similarity=0.212  Sum_probs=199.0

Q ss_pred             cCCccccccCcccEEEEEEcC----CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC----
Q 003296          557 ANPLNVELKTRFSTYYKAVMP----SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD----  628 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~----  628 (833)
                      |...+.||+|+||.||+|.+.    +|+.||||++....  ......+++.+|++++++++||||+++++++...+    
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   78 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADI--FSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGR   78 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEecccc--CChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCc
Confidence            456788999999999999853    47899999984221  11223467899999999999999999999987542    


Q ss_pred             --ceEEEEeeCCCCChhhhhhcCC----CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceec
Q 003296          629 --SAYLFYEYAPKGTLFDVLHGCL----ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIG  702 (833)
Q Consensus       629 --~~~lv~ey~~~g~L~~~l~~~~----~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~  702 (833)
                        ..++++||+++|+|.+++....    ...+++.....++.|++.|++|||   +.+|+||||||+||+++.++.+|++
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~nili~~~~~~kl~  155 (273)
T cd05074          79 LPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLS---SKNFIHRDLAARNCMLNENMTVCVA  155 (273)
T ss_pred             ccceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeecccchhhEEEcCCCCEEEC
Confidence              2478999999999998875321    125789999999999999999999   7889999999999999999999999


Q ss_pred             cceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccc
Q 003296          703 DIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDK  781 (833)
Q Consensus       703 dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~  781 (833)
                      |||+++...............+++.|++||......++.++|||||||++|||++ |+.||.+.... ....... ....
T Consensus       156 dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~~-~~~~~~~-~~~~  233 (273)
T cd05074         156 DFGLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVENS-EIYNYLI-KGNR  233 (273)
T ss_pred             cccccccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCHH-HHHHHHH-cCCc
Confidence            9999986543221111223456778999999988889999999999999999999 88998644322 1111111 1111


Q ss_pred             ccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296          782 LDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR  833 (833)
Q Consensus       782 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r  833 (833)
                      ..      ..      ...+..+.+++.+||+.+|++||++.|+++.|++++
T Consensus       234 ~~------~~------~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~~~  273 (273)
T cd05074         234 LK------QP------PDCLEDVYELMCQCWSPEPKCRPSFQHLRDQLELIW  273 (273)
T ss_pred             CC------CC------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhhC
Confidence            00      00      122357889999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=100.00  E-value=4.2e-38  Score=334.90  Aligned_cols=249  Identities=14%  Similarity=0.230  Sum_probs=199.2

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      .|+....||+|+||.||++.. .++..||||++....    ....+.+.+|+.++++++||||+++++++...+..|+||
T Consensus        23 ~~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~   98 (292)
T cd06658          23 YLDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRK----QQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVM   98 (292)
T ss_pred             HHhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecch----HHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEE
Confidence            334456799999999999997 478999999984221    123467899999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++++|.+++..   ..+++.++..++.|++.|++|||   +.+|+||||||+||++++++.+|++|||++.......
T Consensus        99 e~~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~  172 (292)
T cd06658          99 EFLEGGALTDIVTH---TRMNEEQIATVCLSVLRALSYLH---NQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEV  172 (292)
T ss_pred             eCCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEcCCCCEEEccCcchhhccccc
Confidence            99999999999864   35889999999999999999999   7889999999999999999999999999987653222


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCc
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS  794 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (833)
                      .  ......|+..|+|||+..+..++.++|||||||++|||++|+.||........... ..       ....+....  
T Consensus       173 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~-~~-------~~~~~~~~~--  240 (292)
T cd06658         173 P--KRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRR-IR-------DNLPPRVKD--  240 (292)
T ss_pred             c--cCceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHH-HH-------hcCCCcccc--
Confidence            1  12345789999999999888899999999999999999999999975443221111 00       001111110  


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          795 LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       795 ~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        .......+.+++.+|++.||++|||++|++++
T Consensus       241 --~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~  272 (292)
T cd06658         241 --SHKVSSVLRGFLDLMLVREPSQRATAQELLQH  272 (292)
T ss_pred             --ccccCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence              11223467789999999999999999999976

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=9.4e-38  Score=331.79  Aligned_cols=264  Identities=17%  Similarity=0.240  Sum_probs=202.7

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|+..+.||+|+||.||+|... +|+.||+|++.....  .....+.+.+|++++++++||||+++++++..++..|+||
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   79 (286)
T cd07846           2 KYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESED--DKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVF   79 (286)
T ss_pred             ceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccC--cchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEE
Confidence            4677899999999999999985 689999999842211  1223567889999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++++|.++...  ...++|.++..++.|+++||+|||   +.+|+|||+||+||++++++.+|++|||++.......
T Consensus        80 e~~~~~~l~~~~~~--~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~  154 (286)
T cd07846          80 EFVDHTVLDDLEKY--PNGLDESRVRKYLFQILRGIEFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPG  154 (286)
T ss_pred             ecCCccHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEECCCCcEEEEeeeeeeeccCCc
Confidence            99999999887764  335899999999999999999999   7789999999999999999999999999998764332


Q ss_pred             CCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc-------------
Q 003296          715 STGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD-------------  780 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~-------------  780 (833)
                      .  ......|+..|+|||++.+ ..++.++|||||||++|||++|++||........+.........             
T Consensus       155 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (286)
T cd07846         155 E--VYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLIPRHQEIFQKNP  232 (286)
T ss_pred             c--ccCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHhCCCchhhHHHhccch
Confidence            1  2234568999999998875 44788999999999999999999999755443322211110000             


Q ss_pred             cccccccccccCCch---hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          781 KLDHILDFNVSRTSL---AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       781 ~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .......+.......   .....+..+.+++.+||+.+|++||++.|++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  283 (286)
T cd07846         233 LFAGMRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLHH  283 (286)
T ss_pred             HhhccccccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhcC
Confidence            000000000000000   011234578899999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=3.3e-38  Score=330.22  Aligned_cols=253  Identities=24%  Similarity=0.336  Sum_probs=199.9

Q ss_pred             cCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      |+..+.||+|+||+||+|... +++.||+|++.......  .......+|++++++++||||+++++++...+..++|||
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~--~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~   78 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEE--EEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVME   78 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHH--HHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccc--cccchhhhhhhcccccccccccccccccccccccccccc
Confidence            445689999999999999975 67799999995332211  122344669999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      |+++++|.+++..  ...+++..+..++.|+++||+|||   +.+|+||||||+||++++++.++++|||.+......  
T Consensus        79 ~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~L~~Lh---~~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~--  151 (260)
T PF00069_consen   79 YCPGGSLQDYLQK--NKPLSEEEILKIAYQILEALAYLH---SKGIVHRDIKPENILLDENGEVKLIDFGSSVKLSEN--  151 (260)
T ss_dssp             EETTEBHHHHHHH--HSSBBHHHHHHHHHHHHHHHHHHH---HTTEEESSBSGGGEEESTTSEEEESSGTTTEESTST--
T ss_pred             ccccccccccccc--cccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccc--
Confidence            9999999999983  456899999999999999999999   779999999999999999999999999998864211  


Q ss_pred             CCcccccccccccccccccc-CCcccccCcchhhHHHHHHHHhCCCcccCCccHH--HHHHHhhcccccccccccccccC
Q 003296          716 TGSLSTVAGSVGYIPPEYAY-TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELA--KWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~-~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      ........||..|+|||++. +..++.++||||+|+++|||++|+.||.......  .........  .    ...... 
T Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~--~----~~~~~~-  224 (260)
T PF00069_consen  152 NENFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNSDDQLEIIEKILKR--P----LPSSSQ-  224 (260)
T ss_dssp             TSEBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHHHHHHHHHHHHHT--H----HHHHTT-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhcccc--c----cccccc-
Confidence            12334578999999999988 7889999999999999999999999998652111  111111100  0    000000 


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                         .......++.+++.+||+.||++||++.|++++
T Consensus       225 ---~~~~~~~~l~~li~~~l~~~p~~R~~~~~l~~~  257 (260)
T PF00069_consen  225 ---QSREKSEELRDLIKKMLSKDPEQRPSAEELLKH  257 (260)
T ss_dssp             ---SHTTSHHHHHHHHHHHSSSSGGGSTTHHHHHTS
T ss_pred             ---ccchhHHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence               000112678899999999999999999999864

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=5.3e-38  Score=333.32  Aligned_cols=263  Identities=19%  Similarity=0.246  Sum_probs=199.1

Q ss_pred             cCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      |+..+.||+|+||.||+|... +|..||+|++....  ........+.+|++++++++||||+++++++.+.+..++|+|
T Consensus         2 y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~--~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   79 (284)
T cd07839           2 YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDD--DDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFE   79 (284)
T ss_pred             ceeEEEecccCCeEEEEEEECCCCcEEEEEEeeccc--ccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEe
Confidence            667789999999999999974 79999999984321  122334578899999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      |++ |+|.+++... ...+++..+..++.|+++||.|||   ..+|+||||||+||+++.++.+|++|||+++.......
T Consensus        80 ~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~al~~LH---~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~  154 (284)
T cd07839          80 YCD-QDLKKYFDSC-NGDIDPEIVKSFMFQLLKGLAFCH---SHNVLHRDLKPQNLLINKNGELKLADFGLARAFGIPVR  154 (284)
T ss_pred             cCC-CCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEEcCCCcEEECccchhhccCCCCC
Confidence            997 5888887643 345899999999999999999999   78999999999999999999999999999986543221


Q ss_pred             CCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc--------cccccc
Q 003296          716 TGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD--------KLDHIL  786 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~--------~~~~~~  786 (833)
                        ......+++.|+|||++.+. .++.++|||||||++|||+||+.|+..+.+.............        ......
T Consensus       155 --~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (284)
T cd07839         155 --CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLP  232 (284)
T ss_pred             --CcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHHHHHHHHHHHhCCCChHHhHHhhhcc
Confidence              12345678999999988764 4789999999999999999999987544433222211110000        000000


Q ss_pred             ccc----ccCCc---hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          787 DFN----VSRTS---LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       787 ~~~----~~~~~---~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      +..    .....   ........++.+++.+||+.||++|||++|++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~h  281 (284)
T cd07839         233 DYKPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQH  281 (284)
T ss_pred             cccccCCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhcC
Confidence            000    00000   0011234577899999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=2.4e-37  Score=326.87  Aligned_cols=249  Identities=17%  Similarity=0.274  Sum_probs=202.6

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ..|+..+.||+|+||.||+|... ++..||+|.+.....   ....+.|.+|++++++++||||+++++++.++...++|
T Consensus         4 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (277)
T cd06640           4 ELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEA---EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWII   80 (277)
T ss_pred             HhhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEecccc---HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEE
Confidence            45667788999999999999974 689999999842211   12346799999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++..   ..+++.+...++.|++.|++|+|   ..+++|+||+|+||+++.++.++++|||++......
T Consensus        81 ~e~~~~~~L~~~i~~---~~l~~~~~~~~~~~l~~~l~~lh---~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~  154 (277)
T cd06640          81 MEYLGGGSALDLLRA---GPFDEFQIATMLKEILKGLDYLH---SEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDT  154 (277)
T ss_pred             EecCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---hCCccCcCCChhhEEEcCCCCEEEcccccceeccCC
Confidence            999999999999874   35889999999999999999999   789999999999999999999999999999876433


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      ..  ......|+..|+|||++.+..++.++|||||||++|||+||+.||.+..... ..... .. .         ..  
T Consensus       155 ~~--~~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~-~~~~~-~~-~---------~~--  218 (277)
T cd06640         155 QI--KRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMR-VLFLI-PK-N---------NP--  218 (277)
T ss_pred             cc--ccccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChHh-Hhhhh-hc-C---------CC--
Confidence            21  1233568899999999988889999999999999999999999997543221 11100 00 0         00  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .......+..+.+++.+||+.+|++||++.|++++
T Consensus       219 ~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06640         219 PTLTGEFSKPFKEFIDACLNKDPSFRPTAKELLKH  253 (277)
T ss_pred             CCCchhhhHHHHHHHHHHcccCcccCcCHHHHHhC
Confidence            01112345678899999999999999999999876

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9e-38  Score=330.82  Aligned_cols=252  Identities=17%  Similarity=0.248  Sum_probs=200.6

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||.||+|... ++..||+|.+....    ....+.|.+|++++++++||||+++++++..++..|+|
T Consensus         5 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (280)
T cd06611           5 DIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIES----EEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWIL   80 (280)
T ss_pred             hHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCC----HHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEE
Confidence            45777889999999999999974 78999999984221    12346799999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++... ...+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+|++|||++......
T Consensus        81 ~e~~~~~~L~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lh---~~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~  156 (280)
T cd06611          81 IEFCDGGALDSIMLEL-ERGLTEPQIRYVCRQMLEALNFLH---SHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKST  156 (280)
T ss_pred             eeccCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEECCCCCEEEccCccchhhccc
Confidence            9999999999998753 346899999999999999999999   788999999999999999999999999988755322


Q ss_pred             CCCCcccccccccccccccccc-----CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAY-----TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ..  ......||+.|+|||++.     ...++.++|||||||++|||++|+.||......... ...... ..      +
T Consensus       157 ~~--~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~~~~~-~~~~~~-~~------~  226 (280)
T cd06611         157 LQ--KRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNPMRVL-LKILKS-EP------P  226 (280)
T ss_pred             cc--ccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCCHHHHH-HHHhcC-CC------C
Confidence            21  123457899999999874     344778999999999999999999999754332211 111110 00      0


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ....    ....+.++.+++.+||+.||++||++.+|+++
T Consensus       227 ~~~~----~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  262 (280)
T cd06611         227 TLDQ----PSKWSSSFNDFLKSCLVKDPDDRPTAAELLKH  262 (280)
T ss_pred             CcCC----cccCCHHHHHHHHHHhccChhhCcCHHHHhcC
Confidence            0000    11233467889999999999999999999875

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=2.2e-37  Score=326.37  Aligned_cols=258  Identities=21%  Similarity=0.302  Sum_probs=201.4

Q ss_pred             cCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhh------ccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296          557 ANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQ------LGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS  629 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~------~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~  629 (833)
                      |...+.||+|+||.||+|.. .+|+.||||+++.......      ....+.+.+|++++++++||||+++++++...+.
T Consensus         3 ~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   82 (272)
T cd06629           3 WVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEEY   82 (272)
T ss_pred             eeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCCc
Confidence            45668999999999999986 4789999998842211111      1123568899999999999999999999999999


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                      .++||||+++|+|.+++++.  ..+++..+..++.|++.||.|||   +.+++||||||+||+++.++.+|++|||+++.
T Consensus        83 ~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~~~nil~~~~~~~~l~d~~~~~~  157 (272)
T cd06629          83 LSIFLEYVPGGSIGSCLRTY--GRFEEQLVRFFTEQVLEGLAYLH---SKGILHRDLKADNLLVDADGICKISDFGISKK  157 (272)
T ss_pred             eEEEEecCCCCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHh---hCCeeecCCChhhEEEcCCCeEEEeecccccc
Confidence            99999999999999999863  46899999999999999999999   78899999999999999999999999999976


Q ss_pred             eCCCCCCCccccccccccccccccccCCc--ccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc
Q 003296          710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMR--VTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (833)
                      ..............|+..|+|||++....  ++.++|||||||++||+++|+.||........+.......   ....+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~---~~~~~~  234 (272)
T cd06629         158 SDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAIAAMFKLGNKR---SAPPIP  234 (272)
T ss_pred             ccccccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcchHHHHHHhhccc---cCCcCC
Confidence            54322111223457899999999987654  8899999999999999999999997544433222111100   000111


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ...      ....+.++.+++.+||+.||++|||++||+++
T Consensus       235 ~~~------~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  269 (272)
T cd06629         235 PDV------SMNLSPVALDFLNACFTINPDNRPTARELLQH  269 (272)
T ss_pred             ccc------cccCCHHHHHHHHHHhcCChhhCCCHHHHhhC
Confidence            110      11234578899999999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=1.8e-37  Score=329.59  Aligned_cols=256  Identities=16%  Similarity=0.212  Sum_probs=200.5

Q ss_pred             HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEe----
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVL----  625 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~----  625 (833)
                      .+.++|+..+.||+|+||.||+|.. .+|+.||+|++....     ....++.+|+.+++++ +||||++++++|.    
T Consensus        15 ~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~-----~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~   89 (286)
T cd06638          15 DPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIH-----DIDEEIEAEYNILKALSDHPNVVKFYGMYYKKDV   89 (286)
T ss_pred             CcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeecccc-----chHHHHHHHHHHHHHHhcCCCeeeeeeeeeeccc
Confidence            5667888999999999999999997 478999999884211     1235688999999999 6999999999985    


Q ss_pred             -cCCceEEEEeeCCCCChhhhhhcC--CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceec
Q 003296          626 -ASDSAYLFYEYAPKGTLFDVLHGC--LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIG  702 (833)
Q Consensus       626 -~~~~~~lv~ey~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~  702 (833)
                       ..+..++||||+++|+|.++++..  ....+++..+..++.|+++||.|||   +.+|+||||||+||++++++.+|++
T Consensus        90 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nili~~~~~~kl~  166 (286)
T cd06638          90 KNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLH---VNKTIHRDVKGNNILLTTEGGVKLV  166 (286)
T ss_pred             CCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHH---hCCccccCCCHHhEEECCCCCEEEc
Confidence             345689999999999999988642  2346889999999999999999999   7899999999999999999999999


Q ss_pred             cceeeeeeCCCCCCCccccccccccccccccccC-----CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhc
Q 003296          703 DIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT-----MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSA  777 (833)
Q Consensus       703 dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~  777 (833)
                      |||+++.......  ......|++.|+|||++..     ..++.++||||+||++|||++|+.||.............  
T Consensus       167 dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~~~~~~~~~--  242 (286)
T cd06638         167 DFGVSAQLTSTRL--RRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHPMRALFKIP--  242 (286)
T ss_pred             cCCceeecccCCC--ccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCchhHHHhhcc--
Confidence            9999987643221  1234579999999998753     447899999999999999999999997554332221110  


Q ss_pred             ccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Q 003296          778 QQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML  829 (833)
Q Consensus       778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L  829 (833)
                      . .......++         .....++.+++.+||+.||++|||+.||+++.
T Consensus       243 ~-~~~~~~~~~---------~~~~~~~~~li~~~l~~~p~~Rps~~ell~~~  284 (286)
T cd06638         243 R-NPPPTLHQP---------ELWSNEFNDFIRKCLTKDYEKRPTVSDLLQHV  284 (286)
T ss_pred             c-cCCCcccCC---------CCcCHHHHHHHHHHccCCcccCCCHHHHhhcc
Confidence            0 000000000         01234678899999999999999999999874

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-39  Score=366.19  Aligned_cols=251  Identities=22%  Similarity=0.304  Sum_probs=203.8

Q ss_pred             CCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEee
Q 003296          558 NPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEY  636 (833)
Q Consensus       558 ~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey  636 (833)
                      .....||.|.||.||-|.. .+|...|||-++-....  ....+...+|+.++..++|||+|++||+-.+++..+|.|||
T Consensus      1238 qrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~--~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFMEy 1315 (1509)
T KOG4645|consen 1238 QRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSD--HKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFMEY 1315 (1509)
T ss_pred             ccccccCCcceeeeEEeecCCccchhhhhhhhcCccc--cccCcchHHHHHHHHhccCccccccCceeecHHHHHHHHHH
Confidence            4578999999999999995 68999999988532221  44567789999999999999999999999999999999999


Q ss_pred             CCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCC
Q 003296          637 APKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST  716 (833)
Q Consensus       637 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~  716 (833)
                      |++|+|.+.+..  ++..++.....+..|++.|++|||   +.+||||||||+||++|.+|.+|.+|||.|+.+.....+
T Consensus      1316 C~~GsLa~ll~~--gri~dE~vt~vyt~qll~gla~LH---~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~ 1390 (1509)
T KOG4645|consen 1316 CEGGSLASLLEH--GRIEDEMVTRVYTKQLLEGLAYLH---EHGIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQT 1390 (1509)
T ss_pred             hccCcHHHHHHh--cchhhhhHHHHHHHHHHHHHHHHH---hcCceecCCCccceeeecCCcEEeecccceeEecCchhc
Confidence            999999999975  455777777788999999999999   889999999999999999999999999999887544311


Q ss_pred             --CccccccccccccccccccCCc---ccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296          717 --GSLSTVAGSVGYIPPEYAYTMR---VTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       717 --~~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                        .......||+.|||||++.+.+   ...++||||+|||+.||+||+.||..-+.  +|........+.          
T Consensus      1391 ~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dn--e~aIMy~V~~gh---------- 1458 (1509)
T KOG4645|consen 1391 MPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDN--EWAIMYHVAAGH---------- 1458 (1509)
T ss_pred             CCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccc--hhHHHhHHhccC----------
Confidence              2234578999999999997644   45789999999999999999999974332  233222111111          


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                       .+..+...+.+..+++.+|++.||++|.++.|++++
T Consensus      1459 -~Pq~P~~ls~~g~dFle~Cl~~dP~~Rw~~~qlle~ 1494 (1509)
T KOG4645|consen 1459 -KPQIPERLSSEGRDFLEHCLEQDPKMRWTASQLLEH 1494 (1509)
T ss_pred             -CCCCchhhhHhHHHHHHHHHhcCchhhhHHHHHHHh
Confidence             111223466788899999999999999999988875

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=2e-37  Score=330.16  Aligned_cols=264  Identities=16%  Similarity=0.252  Sum_probs=198.1

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +.|+..+.||+|+||.||+|..+ +|+.||||.+....   .......+.+|++++++++||||+++++++..++..++|
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv   81 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEH---EEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLV   81 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEeccc---ccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEE
Confidence            45777889999999999999975 78999999984221   112235678999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++ +|.+++.... ..+++.....++.|+++||.|||   +.+|+||||||+||+++.++.+|++|||+++.....
T Consensus        82 ~e~~~~-~L~~~~~~~~-~~~~~~~~~~~~~ql~~al~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~  156 (291)
T cd07844          82 FEYLDT-DLKQYMDDCG-GGLSMHNVRLFLFQLLRGLAYCH---QRRVLHRDLKPQNLLISERGELKLADFGLARAKSVP  156 (291)
T ss_pred             EecCCC-CHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHH---hCCeecccCCHHHEEEcCCCCEEECccccccccCCC
Confidence            999985 9999987542 36899999999999999999999   789999999999999999999999999998754322


Q ss_pred             CCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcc-----ccccccc--
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQ-----QDKLDHI--  785 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~-----~~~~~~~--  785 (833)
                      ..  ......++..|+|||++.+ ..++.++||||+||++|||++|+.||.+.....+........     .+.....  
T Consensus       157 ~~--~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (291)
T cd07844         157 SK--TYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSS  234 (291)
T ss_pred             Cc--cccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHhcCCCChhhhhhhhh
Confidence            11  1123457889999998875 458899999999999999999999997544222211111000     0000000  


Q ss_pred             ----cccccc--CCchh-----HHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          786 ----LDFNVS--RTSLA-----VRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       786 ----~~~~~~--~~~~~-----~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                          ......  .....     .......+.+++.+|++.+|++|||+.|++.+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~l~~  288 (291)
T cd07844         235 NPEFKPYSFPFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEAMKH  288 (291)
T ss_pred             ccccccccccccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHHHHhcC
Confidence                000000  00000     00112567899999999999999999999864

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=3.2e-37  Score=321.95  Aligned_cols=250  Identities=22%  Similarity=0.312  Sum_probs=202.1

Q ss_pred             cCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      |...+.||+|+||.||+|.. .+++.+|||++....  ......+.+.+|++++++++||||+++++.+..++..++|||
T Consensus         2 y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   79 (256)
T cd08220           2 YEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQ--MTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVME   79 (256)
T ss_pred             ceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccc--cccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEe
Confidence            66778999999999999997 478999999984321  122335689999999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC-CCceeccceeeeeeCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL-KEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~-~~~ki~dfgl~~~~~~~~  714 (833)
                      |+++|+|.+++.......+++..+..++.|+++|++|||   +.+|+||||||+||+++++ +.+|++|||+++......
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh---~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~  156 (256)
T cd08220          80 YAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVH---TKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKS  156 (256)
T ss_pred             cCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEEccCCCceecCCCc
Confidence            999999999998654556899999999999999999999   7899999999999999855 467999999998764332


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCc
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS  794 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (833)
                      .   .....|+..|+|||++.+..++.++|||||||++|||++|+.||...... ..+......  ....+     .   
T Consensus       157 ~---~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~-~~~~~~~~~--~~~~~-----~---  222 (256)
T cd08220         157 K---AYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANLP-ALVLKIMSG--TFAPI-----S---  222 (256)
T ss_pred             c---ccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCchH-HHHHHHHhc--CCCCC-----C---
Confidence            1   13457899999999998888999999999999999999999999754322 222111111  00000     0   


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          795 LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       795 ~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                         ...+.++.+++.+||+.||++|||++|++++
T Consensus       223 ---~~~~~~l~~li~~~l~~~p~~Rpt~~~ll~~  253 (256)
T cd08220         223 ---DRYSPDLRQLILSMLNLDPSKRPQLSQIMAQ  253 (256)
T ss_pred             ---CCcCHHHHHHHHHHccCChhhCCCHHHHhhC
Confidence               1234467899999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=100.00  E-value=2e-37  Score=330.12  Aligned_cols=265  Identities=17%  Similarity=0.189  Sum_probs=198.4

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      ++.|...+.||+|+||.||+|.. .+|..||+|++....   .......+.+|++++++++|+||+++++++..++..|+
T Consensus         4 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~---~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~l   80 (291)
T cd07870           4 ATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKT---EEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTF   80 (291)
T ss_pred             cceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccC---cCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEE
Confidence            45788889999999999999986 478999999984221   12234568899999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||||++ +++.+++... ...+++..+..++.|+++||+|||   ..+|+||||||+||+++.++.+|++|||+++....
T Consensus        81 v~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~  155 (291)
T cd07870          81 VFEYMH-TDLAQYMIQH-PGGLHPYNVRLFMFQLLRGLAYIH---GQHILHRDLKPQNLLISYLGELKLADFGLARAKSI  155 (291)
T ss_pred             EEeccc-CCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChHHEEEcCCCcEEEeccccccccCC
Confidence            999996 6887776543 245788889999999999999999   77899999999999999999999999999876432


Q ss_pred             CCCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc-----------
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD-----------  780 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~-----------  780 (833)
                      ...  ......+++.|+|||++.+. .++.++|||||||++|||++|+.||.......+..........           
T Consensus       156 ~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (291)
T cd07870         156 PSQ--TYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEKIWTVLGVPTEDTWPGVS  233 (291)
T ss_pred             CCC--CCCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHcCCCChhhhhhhh
Confidence            221  12345679999999998754 5788999999999999999999999754432221111100000           


Q ss_pred             ----cccccccccccCCchh---HHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          781 ----KLDHILDFNVSRTSLA---VRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       781 ----~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                          ................   .......+.+++.+|++.||++|||+.|++.+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l~h  288 (291)
T cd07870         234 KLPNYKPEWFLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQDALLH  288 (291)
T ss_pred             hcccccchhccccCCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHHHHhcC
Confidence                0000000000000000   00123567799999999999999999999864

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=3.4e-37  Score=322.35  Aligned_cols=238  Identities=19%  Similarity=0.278  Sum_probs=189.0

Q ss_pred             cccccCcccEEEEEEcCC-C----------ceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296          561 NVELKTRFSTYYKAVMPS-G----------MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS  629 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~~-~----------~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~  629 (833)
                      +.||+|+||.||+|...+ +          ..||+|.+....     .....|.+|++++++++||||+++++++.. +.
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~-----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~   74 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDH-----RDSLAFFETASLMSQLSHKHLVKLYGVCVR-DE   74 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccch-----hhHHHHHHHHHHHHcCCCcchhheeeEEec-CC
Confidence            468999999999999853 3          257778773211     115789999999999999999999999988 78


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC-------Cceec
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK-------EPQIG  702 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~-------~~ki~  702 (833)
                      .++||||+++|+|.+++.... ..+++..+..++.|++.||+|||   +.+|+||||||+||+++.++       .+|++
T Consensus        75 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~  150 (259)
T cd05037          75 NIMVEEYVKFGPLDVFLHREK-NNVSLHWKLDVAKQLASALHYLE---DKKLVHGNVCGKNILVARYGLNEGYVPFIKLS  150 (259)
T ss_pred             cEEEEEcCCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHh---hCCeecccCccceEEEecCccccCCceeEEeC
Confidence            899999999999999998632 26899999999999999999999   78999999999999999887       79999


Q ss_pred             cceeeeeeCCCCCCCccccccccccccccccccCC--cccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccc
Q 003296          703 DIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTM--RVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQ  779 (833)
Q Consensus       703 dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~  779 (833)
                      |||++......      ....++..|+|||++.+.  .++.++|||||||++|||++ |..||..... ..+....... 
T Consensus       151 Dfg~a~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~-~~~~~~~~~~-  222 (259)
T cd05037         151 DPGIPITVLSR------EERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSS-SEKERFYQDQ-  222 (259)
T ss_pred             CCCcccccccc------cccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCCc-hhHHHHHhcC-
Confidence            99998865431      234577889999998876  78999999999999999999 5777764321 1111111100 


Q ss_pred             ccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 003296          780 DKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLL  830 (833)
Q Consensus       780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~  830 (833)
                      .        .....      ....+.+++.+||+.+|++|||+.||++.|.
T Consensus       223 ~--------~~~~~------~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~  259 (259)
T cd05037         223 H--------RLPMP------DCAELANLINQCWTYDPTKRPSFRAILRDLN  259 (259)
T ss_pred             C--------CCCCC------CchHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence            0        00000      0157789999999999999999999999873

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.1e-37  Score=322.39  Aligned_cols=254  Identities=16%  Similarity=0.221  Sum_probs=203.8

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.+|+|+||.||+|... +++.+|+|.+....    ....+.+.+|++++++++||||+++++++...+..|+|
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~----~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~   78 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEP----GDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIV   78 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCc----hhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEE
Confidence            45778889999999999999974 68899999984221    12457899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++++|.+++... ...+++.++..++.|++.|++|||   ..+|+||||||+||++++++.+|++|||++......
T Consensus        79 ~e~~~~~~l~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lh---~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~  154 (262)
T cd06613          79 MEYCGGGSLQDIYQVT-RGPLSELQIAYVCRETLKGLAYLH---ETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTAT  154 (262)
T ss_pred             EeCCCCCcHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHH---hCCceecCCChhhEEECCCCCEEECccccchhhhhh
Confidence            9999999999998753 246899999999999999999999   788999999999999999999999999998765432


Q ss_pred             CCCCccccccccccccccccccCC---cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTM---RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~---~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                      ..  ......|+..|+|||++.+.   .++.++|||||||++|||+||+.||.+............ .  ...   ....
T Consensus       155 ~~--~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~~~~~~~~-~--~~~---~~~~  226 (262)
T cd06613         155 IA--KRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHPMRALFLISK-S--NFP---PPKL  226 (262)
T ss_pred             hh--ccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHh-c--cCC---Cccc
Confidence            21  12345789999999998776   789999999999999999999999975443222111110 0  000   0000


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                          ......+.++.+++.+||+.+|.+|||+.||+.+
T Consensus       227 ----~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~  260 (262)
T cd06613         227 ----KDKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQH  260 (262)
T ss_pred             ----cchhhhhHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence                0112345678899999999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=2.5e-37  Score=328.56  Aligned_cols=253  Identities=19%  Similarity=0.275  Sum_probs=199.1

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|+..+.||+|+||.||+|... +|..||+|.+....   .......|.+|++++++++||||+++++++..++..++||
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~---~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   78 (286)
T cd06622           2 EIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLEL---DESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCM   78 (286)
T ss_pred             hhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeeccc---CHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEE
Confidence            4667889999999999999975 79999999984221   1122467999999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCC-CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          635 EYAPKGTLFDVLHGCL-ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~-~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||+++++|.++++... ...+++..+..++.|++.||.|||+  ..+|+||||||+||+++.++.+|++|||++......
T Consensus        79 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~--~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~  156 (286)
T cd06622          79 EYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKE--EHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVAS  156 (286)
T ss_pred             eecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHh--cCCEeeCCCCHHHEEECCCCCEEEeecCCcccccCC
Confidence            9999999999987532 2368999999999999999999994  358999999999999999999999999998765322


Q ss_pred             CCCCccccccccccccccccccCC------cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTM------RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (833)
                      .    .....|++.|+|||++.+.      .++.++|||||||++|||++|+.||...... .+.....       .+.+
T Consensus       157 ~----~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~-~~~~~~~-------~~~~  224 (286)
T cd06622         157 L----AKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYA-NIFAQLS-------AIVD  224 (286)
T ss_pred             c----cccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcchh-hHHHHHH-------HHhh
Confidence            2    1345688999999988543      3588999999999999999999999643221 1111100       0001


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .....   .......++.+++.+||+.+|++||+++|++.+
T Consensus       225 ~~~~~---~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~  262 (286)
T cd06622         225 GDPPT---LPSGYSDDAQDFVAKCLNKIPNRRPTYAQLLEH  262 (286)
T ss_pred             cCCCC---CCcccCHHHHHHHHHHcccCcccCCCHHHHhcC
Confidence            00000   011245577899999999999999999999875

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=5.5e-38  Score=334.20  Aligned_cols=250  Identities=19%  Similarity=0.259  Sum_probs=206.0

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      ...|.....||+|.|+.|..|+. .+|..||||.+.+.  .......+.+.+|+++|..++|||||+++.+...+..+|+
T Consensus        55 vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt--~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lyl  132 (596)
T KOG0586|consen   55 VGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKT--QLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYL  132 (596)
T ss_pred             ccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhc--ccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEE
Confidence            34577788999999999999997 48999999999422  2223334569999999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||||+.+|.+++++.+.  +......+..++.|+.+|++|||   ...|||||||++||||+.++.+||+|||++..+..
T Consensus       133 V~eya~~ge~~~yl~~~--gr~~e~~ar~~F~q~vsaveYcH---~k~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~  207 (596)
T KOG0586|consen  133 VMEYASGGELFDYLVKH--GRMKEKEARAKFRQIVSAVEYCH---SKNIVHRDLKAENILLDENMNIKIADFGFSTFFDY  207 (596)
T ss_pred             EEEeccCchhHHHHHhc--ccchhhhhhhhhHHHHHHHHHHh---hcceeccccchhhcccccccceeeeccccceeecc
Confidence            99999999999999873  34555788889999999999999   88899999999999999999999999999998864


Q ss_pred             CCCCCccccccccccccccccccCCccc-ccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMRVT-MAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      ..   ...+.+|++.|.|||++.+.+|+ +++|+||+||++|-|+.|..||++..- ...          -++++-..++
T Consensus       208 ~~---~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~l-k~L----------r~rvl~gk~r  273 (596)
T KOG0586|consen  208 GL---MLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNL-KEL----------RPRVLRGKYR  273 (596)
T ss_pred             cc---cccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCccc-ccc----------cchheeeeec
Confidence            43   34678999999999999998885 899999999999999999999985431 110          0111111111


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      -+    .-...++.+++.+++..+|.+|+++++|.++
T Consensus       274 Ip----~~ms~dce~lLrk~lvl~Pskr~~~dqim~~  306 (596)
T KOG0586|consen  274 IP----FYMSCDCEDLLRKFLVLNPSKRGPCDQIMKD  306 (596)
T ss_pred             cc----ceeechhHHHHHHhhccCccccCCHHHhhhh
Confidence            11    1234567799999999999999999999875

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=100.00  E-value=8.1e-38  Score=333.60  Aligned_cols=245  Identities=15%  Similarity=0.229  Sum_probs=197.5

Q ss_pred             ccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCC
Q 003296          560 LNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       560 ~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~  638 (833)
                      ...||+|+||.||+|... +++.||||++....    ....+.+.+|+.++++++||||+++++++..++..|+||||++
T Consensus        26 ~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~----~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~  101 (297)
T cd06659          26 YIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRK----QQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQ  101 (297)
T ss_pred             hhhcCCCCceeEEEEEEcCCCCEEEEEEEEecc----cchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCC
Confidence            457999999999999974 78999999984221    2335678999999999999999999999999999999999999


Q ss_pred             CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCc
Q 003296          639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS  718 (833)
Q Consensus       639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~  718 (833)
                      +|+|.+++..   ..+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||++........  .
T Consensus       102 ~~~L~~~~~~---~~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~--~  173 (297)
T cd06659         102 GGALTDIVSQ---TRLNEEQIATVCESVLQALCYLH---SQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVP--K  173 (297)
T ss_pred             CCCHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHeEEccCCcEEEeechhHhhcccccc--c
Confidence            9999998764   35899999999999999999999   78899999999999999999999999999875533221  1


Q ss_pred             cccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHH
Q 003296          719 LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVR  798 (833)
Q Consensus       719 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (833)
                      .....|+..|+|||++.+..++.++|||||||++|||++|+.||.......... .....  ....     ..    ...
T Consensus       174 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~-~~~~~--~~~~-----~~----~~~  241 (297)
T cd06659         174 RKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMK-RLRDS--PPPK-----LK----NAH  241 (297)
T ss_pred             ccceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHH-HHhcc--CCCC-----cc----ccC
Confidence            234679999999999988889999999999999999999999997544322211 11100  0000     00    001


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          799 SQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       799 ~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .....+.+++.+||+.+|++||+++|++++
T Consensus       242 ~~~~~l~~~i~~~l~~~P~~Rps~~~ll~~  271 (297)
T cd06659         242 KISPVLRDFLERMLTREPQERATAQELLDH  271 (297)
T ss_pred             CCCHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence            123457789999999999999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.7e-37  Score=333.14  Aligned_cols=256  Identities=19%  Similarity=0.217  Sum_probs=204.6

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|+..+.||+|+||.||+|... +|+.||+|.+... ........+.+.+|++++++++||||+++++++...+..|+||
T Consensus         2 ~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   80 (316)
T cd05574           2 HFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKK-EMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVM   80 (316)
T ss_pred             ceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEecc-ccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEE
Confidence            5777889999999999999975 5999999999532 2222224567999999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.+++.......+++..+..++.|+++||+|||   ..+++||||||+||+++.++.++++|||++.......
T Consensus        81 e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~  157 (316)
T cd05574          81 DYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLH---LLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEP  157 (316)
T ss_pred             EecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHH---HCCeeccCCChHHeEEcCCCCEEEeecchhhcccccc
Confidence            9999999999998654457899999999999999999999   7899999999999999999999999999987543221


Q ss_pred             CC---------------------------CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc
Q 003296          715 ST---------------------------GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE  767 (833)
Q Consensus       715 ~~---------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~  767 (833)
                      ..                           .......||..|+|||++.+..++.++|||||||++|||++|+.||.+...
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~  237 (316)
T cd05574         158 PPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNR  237 (316)
T ss_pred             cccccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCch
Confidence            10                           011234689999999999888899999999999999999999999975544


Q ss_pred             HHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCC----HHHHHHH
Q 003296          768 LAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPK----MKSVLRM  828 (833)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps----~~evl~~  828 (833)
                      ...+.... ..          ......  ....+.++.+++.+||+.||++|||    ++|++.+
T Consensus       238 ~~~~~~~~-~~----------~~~~~~--~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~ll~~  289 (316)
T cd05574         238 DETFSNIL-KK----------EVTFPG--SPPVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQH  289 (316)
T ss_pred             HHHHHHHh-cC----------CccCCC--ccccCHHHHHHHHHHccCCHhHCCCchhhHHHHHcC
Confidence            33222111 00          000000  0113567889999999999999999    7777764

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=4.2e-37  Score=324.77  Aligned_cols=257  Identities=21%  Similarity=0.316  Sum_probs=201.9

Q ss_pred             HhcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~  628 (833)
                      .+|.....+|+|+||.||+|+..      +.+.||+|.+.....   ....++|.+|++++++++||||+++++++.+.+
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   81 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKD---ENLQSEFRRELDMFRKLSHKNVVRLLGLCREAE   81 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccc---hHHHHHHHHHHHHHHhcCCcceeeeEEEECCCC
Confidence            46778889999999999999863      346799998842211   113467999999999999999999999999999


Q ss_pred             ceEEEEeeCCCCChhhhhhcCCC-------CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCcee
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCLE-------NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQI  701 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~~-------~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki  701 (833)
                      ..++||||+++|+|.++++....       ..++|..+..++.|++.||+|||   +.+|+||||||+||+++.++.+|+
T Consensus        82 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH---~~~i~H~dlkp~Nili~~~~~~~l  158 (275)
T cd05046          82 PHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLS---NARFVHRDLAARNCLVSSQREVKV  158 (275)
T ss_pred             cceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhh---hcCcccCcCccceEEEeCCCcEEE
Confidence            99999999999999999975431       15899999999999999999999   788999999999999999999999


Q ss_pred             ccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccc
Q 003296          702 GDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQD  780 (833)
Q Consensus       702 ~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~  780 (833)
                      +|||+++....... .......+++.|+|||.+.+..++.++|||||||++|||++ |..||...... ..+...... .
T Consensus       159 ~~~~~~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~~-~~~~~~~~~-~  235 (275)
T cd05046         159 SLLSLSKDVYNSEY-YKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDE-EVLNRLQAG-K  235 (275)
T ss_pred             cccccccccCcccc-cccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccchH-HHHHHHHcC-C
Confidence            99999875432211 11233467888999999888888999999999999999999 78898643322 111111100 0


Q ss_pred             cccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          781 KLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       781 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                       ....    ..      ...+..+.+++.+||+.+|++||++.|++++|.+
T Consensus       236 -~~~~----~~------~~~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~l~~  275 (275)
T cd05046         236 -LELP----VP------EGCPSRLYKLMTRCWAVNPKDRPSFSELVSALGE  275 (275)
T ss_pred             -cCCC----CC------CCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhcC
Confidence             0000    00      1223468899999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=4e-37  Score=323.03  Aligned_cols=254  Identities=17%  Similarity=0.219  Sum_probs=197.7

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhh-hccChhHHHHHHHHHhcCCCCCcccceEEEecC--CceE
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIF-QLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS--DSAY  631 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~-~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~--~~~~  631 (833)
                      +|+..+.||+|+||.||+|.. .+|..||||++....... .....+.+.+|++++++++||||+++++++.+.  ..++
T Consensus         3 ~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~   82 (265)
T cd06652           3 NWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTLS   82 (265)
T ss_pred             cceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceEE
Confidence            577789999999999999997 468999999884221111 112245788999999999999999999998764  4688


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      +||||+++|+|.+++...  ..+++..+..++.|++.||+|||   +.+|+|+||||+||+++.++.+|++|||+++...
T Consensus        83 ~v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~  157 (265)
T cd06652          83 IFMEHMPGGSIKDQLKSY--GALTENVTRKYTRQILEGVSYLH---SNMIVHRDIKGANILRDSVGNVKLGDFGASKRLQ  157 (265)
T ss_pred             EEEEecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEecCCCCEEECcCccccccc
Confidence            999999999999999753  35788889999999999999999   7889999999999999999999999999987653


Q ss_pred             CCCCC-CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296          712 PSKST-GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       712 ~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                      ..... .......|+..|+|||++.+..++.++|||||||++|||++|+.||.......... ..... ..     .+. 
T Consensus       158 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~-~~~~~-~~-----~~~-  229 (265)
T cd06652         158 TICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFEAMAAIF-KIATQ-PT-----NPV-  229 (265)
T ss_pred             cccccccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccchHHHHH-HHhcC-CC-----CCC-
Confidence            21111 11234568999999999988889999999999999999999999997543322211 11111 00     000 


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                           .+......+.+++.+|+. +|++||+++||+++
T Consensus       230 -----~~~~~~~~~~~~i~~~l~-~p~~Rp~~~~il~~  261 (265)
T cd06652         230 -----LPPHVSDHCRDFLKRIFV-EAKLRPSADELLRH  261 (265)
T ss_pred             -----CchhhCHHHHHHHHHHhc-ChhhCCCHHHHhcC
Confidence                 112334567788999985 99999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2e-38  Score=309.57  Aligned_cols=253  Identities=20%  Similarity=0.211  Sum_probs=204.9

Q ss_pred             HHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~  631 (833)
                      ..++|+..+++|+|.||.|-.++- .+|+.+|+|+++ +.-+........-..|-++|+..+||.+..+...|+.++.+|
T Consensus       166 Tm~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlk-KeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlC  244 (516)
T KOG0690|consen  166 TMEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILK-KEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLC  244 (516)
T ss_pred             ccchhhHHHHhcCCccceEEEEeecccCceeehhhhh-hhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEE
Confidence            346788899999999999999986 489999999995 333333334556778999999999999999999999999999


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      .||||+.||.|+-+|..  .+.+++.+...+-.+|+.||.|||   +.+||.||+|.+|.|+|++|++||+|||+|+.--
T Consensus       245 FVMeyanGGeLf~HLsr--er~FsE~RtRFYGaEIvsAL~YLH---s~~ivYRDlKLENLlLDkDGHIKitDFGLCKE~I  319 (516)
T KOG0690|consen  245 FVMEYANGGELFFHLSR--ERVFSEDRTRFYGAEIVSALGYLH---SRNIVYRDLKLENLLLDKDGHIKITDFGLCKEEI  319 (516)
T ss_pred             EEEEEccCceEeeehhh--hhcccchhhhhhhHHHHHHhhhhh---hCCeeeeechhhhheeccCCceEeeecccchhcc
Confidence            99999999999999976  556888888899999999999999   7899999999999999999999999999998643


Q ss_pred             CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      ...  ..+.++||||.|.|||++....|+.++|+|.+|||+|||++|+.||.....-. ........          .++
T Consensus       320 ~~g--~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh~k-LFeLIl~e----------d~k  386 (516)
T KOG0690|consen  320 KYG--DTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDHEK-LFELILME----------DLK  386 (516)
T ss_pred             ccc--ceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccchhH-HHHHHHhh----------hcc
Confidence            222  24578999999999999999999999999999999999999999998543311 11111111          111


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARP-----KMKSVLRM  828 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~  828 (833)
                          .++....++..++...+.+||.+|.     .+.||.+|
T Consensus       387 ----FPr~ls~eAktLLsGLL~kdP~kRLGgGpdDakEi~~h  424 (516)
T KOG0690|consen  387 ----FPRTLSPEAKTLLSGLLKKDPKKRLGGGPDDAKEIMRH  424 (516)
T ss_pred             ----CCccCCHHHHHHHHHHhhcChHhhcCCCchhHHHHHhh
Confidence                1123345677888899999999994     35555543

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=100.00  E-value=4.5e-37  Score=329.89  Aligned_cols=249  Identities=22%  Similarity=0.291  Sum_probs=198.1

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +.|+..+.||+|+||.||+|... +|+.||+|++..... ......+++.+|++++++++||||++++++|..++..|+|
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~-~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv   93 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGK-QSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLV   93 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEecccc-CcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEE
Confidence            44777889999999999999974 789999999842221 1122345789999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||++ |++.+++... ...+++..+..++.|++.||.|||   ..+|+||||+|+||++++++.+|++|||++......
T Consensus        94 ~e~~~-g~l~~~~~~~-~~~l~~~~~~~~~~ql~~~L~~LH---~~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~  168 (307)
T cd06607          94 MEYCL-GSASDILEVH-KKPLQEVEIAAICHGALQGLAYLH---SHERIHRDIKAGNILLTEPGTVKLADFGSASLVSPA  168 (307)
T ss_pred             HHhhC-CCHHHHHHHc-ccCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcccEEECCCCCEEEeecCcceecCCC
Confidence            99997 5787777543 345899999999999999999999   788999999999999999999999999998765322


Q ss_pred             CCCCcccccccccccccccccc---CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAY---TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                            ....|++.|+|||++.   ...++.++|||||||++|||+||+.||........... .... +.      +..
T Consensus       169 ------~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~~~~~~~-~~~~-~~------~~~  234 (307)
T cd06607         169 ------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYH-IAQN-DS------PTL  234 (307)
T ss_pred             ------CCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCccHHHHHHH-HhcC-CC------CCC
Confidence                  2456889999999874   35688999999999999999999999975443221111 1100 00      000


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                           .......++.+++.+||+.||++||++.+|+.+
T Consensus       235 -----~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  267 (307)
T cd06607         235 -----SSNDWSDYFRNFVDSCLQKIPQDRPSSEELLKH  267 (307)
T ss_pred             -----CchhhCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence                 011234578899999999999999999999875

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=5.3e-37  Score=331.18  Aligned_cols=194  Identities=22%  Similarity=0.336  Sum_probs=159.9

Q ss_pred             cccccCcccEEEEEEcC---CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec--CCceEEEEe
Q 003296          561 NVELKTRFSTYYKAVMP---SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA--SDSAYLFYE  635 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~--~~~~~lv~e  635 (833)
                      ..||+|+||.||+|+..   ++..||+|++...      .....+.+|++++++++|||||++++++..  +...++|||
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~------~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e   80 (317)
T cd07867           7 CKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGT------GISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFD   80 (317)
T ss_pred             eEeccCCCeeEEEEEecCCCccceEEEEEecCC------CCcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEe
Confidence            57999999999999964   4578999998421      123468899999999999999999999864  457899999


Q ss_pred             eCCCCChhhhhhcC-------CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee----CCCCCceeccc
Q 003296          636 YAPKGTLFDVLHGC-------LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL----KSLKEPQIGDI  704 (833)
Q Consensus       636 y~~~g~L~~~l~~~-------~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill----~~~~~~ki~df  704 (833)
                      |+++ +|.+++...       ....+++..+..++.|++.||+|||   +.+|+||||||+||++    ++++.+||+||
T Consensus        81 ~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~Df  156 (317)
T cd07867          81 YAEH-DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIADM  156 (317)
T ss_pred             eeCC-cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHH---hCCEEcCCCCHHHEEEccCCCCCCcEEEeec
Confidence            9975 888877521       1225889999999999999999999   7889999999999999    56678999999


Q ss_pred             eeeeeeCCCCCC-CccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccC
Q 003296          705 ELCKVIDPSKST-GSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQ  764 (833)
Q Consensus       705 gl~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~  764 (833)
                      |+++........ .......||+.|+|||++.+ ..++.++|||||||++|||+||++||..
T Consensus       157 G~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~  218 (317)
T cd07867         157 GFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHC  218 (317)
T ss_pred             cceeccCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCccc
Confidence            999876433211 12234678999999999876 4589999999999999999999999973

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=3.6e-37  Score=326.57  Aligned_cols=254  Identities=17%  Similarity=0.281  Sum_probs=200.2

Q ss_pred             HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEec---
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLA---  626 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~---  626 (833)
                      .....|+..+.+|+|+||.||+|.. .+++.||+|.+....     ....++..|+.+++++ +||||+++++++..   
T Consensus        13 ~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~-----~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~   87 (282)
T cd06636          13 DPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE-----DEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSP   87 (282)
T ss_pred             ChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh-----HHHHHHHHHHHHHHHhcCCCcEEEEeeehhcccc
Confidence            3456788889999999999999997 578999999984221     1235788999999999 69999999999863   


Q ss_pred             ---CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceecc
Q 003296          627 ---SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGD  703 (833)
Q Consensus       627 ---~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~d  703 (833)
                         .+..|+||||+++|+|.+++.......+++..+..++.|+++|++|||   +.+|+|||+||+||++++++.++++|
T Consensus        88 ~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~~ivH~dl~~~nili~~~~~~~l~d  164 (282)
T cd06636          88 PGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLH---AHKVIHRDIKGQNVLLTENAEVKLVD  164 (282)
T ss_pred             cCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEee
Confidence               457899999999999999997654556889999999999999999999   78899999999999999999999999


Q ss_pred             ceeeeeeCCCCCCCcccccccccccccccccc-----CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcc
Q 003296          704 IELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY-----TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQ  778 (833)
Q Consensus       704 fgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~  778 (833)
                      ||++........  ......|++.|+|||++.     ...++.++|||||||++|||++|+.||............  ..
T Consensus       165 fg~~~~~~~~~~--~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~~~~~~~--~~  240 (282)
T cd06636         165 FGVSAQLDRTVG--RRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRALFLI--PR  240 (282)
T ss_pred             Ccchhhhhcccc--CCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccCHHhhhhhH--hh
Confidence            999876532211  123467999999999875     345888999999999999999999999754322211110  00


Q ss_pred             cccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          779 QDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                       .     ..+..     .....+.++.+++.+||+.||.+||++.|++++
T Consensus       241 -~-----~~~~~-----~~~~~~~~~~~li~~cl~~~p~~Rp~~~ell~~  279 (282)
T cd06636         241 -N-----PPPKL-----KSKKWSKKFIDFIEGCLVKNYLSRPSTEQLLKH  279 (282)
T ss_pred             -C-----CCCCC-----cccccCHHHHHHHHHHhCCChhhCcCHHHHhcC
Confidence             0     00000     011234578899999999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=100.00  E-value=4.1e-38  Score=304.89  Aligned_cols=254  Identities=16%  Similarity=0.155  Sum_probs=207.0

Q ss_pred             HHHhcCC-ccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEec---
Q 003296          553 MEAVANP-LNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLA---  626 (833)
Q Consensus       553 ~~~~~~~-~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~---  626 (833)
                      .+++|.. ..+||-|-.|.|-.|.. .+|+.+|.|++.         +....++|+++.-+. .|||||.++++|..   
T Consensus        59 itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~---------Ds~KARrEVeLHw~~s~h~~iV~IidVyeNs~~  129 (400)
T KOG0604|consen   59 ITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLL---------DSPKARREVELHWMASGHPHIVSIIDVYENSYQ  129 (400)
T ss_pred             chhhheehhhhhccccCCceEEEEeccchhhhHHHHHh---------cCHHHHhHhhhhhhhcCCCceEEeehhhhhhcc
Confidence            4555654 37899999999999996 589999999993         224567899887666 49999999999874   


Q ss_pred             -CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC---CCCceec
Q 003296          627 -SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS---LKEPQIG  702 (833)
Q Consensus       627 -~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~---~~~~ki~  702 (833)
                       ...+.+|||.|+||.|++.+.+++..++++.++-.|+.||+.|+.|||   +..|.||||||+|+|...   +-..|++
T Consensus       130 ~rkcLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH---~~nIAHRDlKpENLLyt~t~~na~lKLt  206 (400)
T KOG0604|consen  130 GRKCLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLH---SMNIAHRDLKPENLLYTTTSPNAPLKLT  206 (400)
T ss_pred             CceeeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHH---hcchhhccCChhheeeecCCCCcceEec
Confidence             356789999999999999999887788999999999999999999999   889999999999999964   3467999


Q ss_pred             cceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccc
Q 003296          703 DIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL  782 (833)
Q Consensus       703 dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~  782 (833)
                      |||+|+....   ...+.+.|-||+|.|||++...+|+..+|+||+||++|-|++|.+||.......       -..+.-
T Consensus       207 DfGFAK~t~~---~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~a-------ispgMk  276 (400)
T KOG0604|consen  207 DFGFAKETQE---PGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLA-------ISPGMK  276 (400)
T ss_pred             ccccccccCC---CccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCcc-------CChhHH
Confidence            9999997543   224567788999999999999999999999999999999999999998432211       000111


Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          783 DHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .++....+..+.+.+...++.+.++|...|..+|.+|.|+.|++.+
T Consensus       277 ~rI~~gqy~FP~pEWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~h  322 (400)
T KOG0604|consen  277 RRIRTGQYEFPEPEWSCVSEAAKDLIRKLLKTEPTERLTIEEVMDH  322 (400)
T ss_pred             hHhhccCccCCChhHhHHHHHHHHHHHHHhcCCchhheeHHHhhcC
Confidence            2222223334455677888899999999999999999999999864

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=100.00  E-value=7.1e-37  Score=321.91  Aligned_cols=258  Identities=20%  Similarity=0.251  Sum_probs=202.7

Q ss_pred             hcCCccccccCcccEEEEEEcCC--CceEEEEEccccchh------hhccChhHHHHHHHHHhc-CCCCCcccceEEEec
Q 003296          556 VANPLNVELKTRFSTYYKAVMPS--GMSYFIKKLNWSDKI------FQLGSHHKFDKELEVLGK-LSNSNVMTPLAYVLA  626 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~~--~~~vavK~~~~~~~~------~~~~~~~~~~~E~~~l~~-l~H~niv~~~~~~~~  626 (833)
                      +|+..+.||+|+||.||+|....  ++.+|||.+......      .......++.+|++++.+ ++||||++++++|..
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            36677899999999999999754  788999988422111      112234567889998875 799999999999999


Q ss_pred             CCceEEEEeeCCCCChhhhhhcC--CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccc
Q 003296          627 SDSAYLFYEYAPKGTLFDVLHGC--LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDI  704 (833)
Q Consensus       627 ~~~~~lv~ey~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~df  704 (833)
                      .+..++||||+++++|.+++...  ....+++..++.++.|++.||.|||+  ..+++||||||+||++++++.+|++||
T Consensus        81 ~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~--~~~i~H~dl~~~nil~~~~~~~~l~df  158 (269)
T cd08528          81 NDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHK--EKRIVHRDLTPNNIMLGEDDKVTITDF  158 (269)
T ss_pred             CCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcc--CCceeecCCCHHHEEECCCCcEEEecc
Confidence            99999999999999999988532  23468999999999999999999994  257999999999999999999999999


Q ss_pred             eeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccc
Q 003296          705 ELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDH  784 (833)
Q Consensus       705 gl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~  784 (833)
                      |.+.......   ......|+..|+|||++.+..++.++|||||||++|||++|+.||..... ..........  ....
T Consensus       159 g~~~~~~~~~---~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~~-~~~~~~~~~~--~~~~  232 (269)
T cd08528         159 GLAKQKQPES---KLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTNM-LSLATKIVEA--VYEP  232 (269)
T ss_pred             cceeeccccc---ccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccCH-HHHHHHHhhc--cCCc
Confidence            9998764332   22456789999999999988899999999999999999999999974432 2211111111  0000


Q ss_pred             cccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          785 ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       785 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                      .        .  ......++.+++.+||+.||++||++.||..++++
T Consensus       233 ~--------~--~~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~~~~  269 (269)
T cd08528         233 L--------P--EGMYSEDVTDVITSCLTPDAEARPDIIQVSAMISD  269 (269)
T ss_pred             C--------C--cccCCHHHHHHHHHHCCCCCccCCCHHHHHHHhcC
Confidence            0        0  01123567899999999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=3.2e-37  Score=330.69  Aligned_cols=257  Identities=16%  Similarity=0.149  Sum_probs=199.8

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|+..+.+|+|+||.||+|... +++.||+|.+... ........+.+.+|++++++++||||+++++++..++..++||
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~-~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (305)
T cd05609           2 DFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQ-NLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVM   80 (305)
T ss_pred             CceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehh-hhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEE
Confidence            5777899999999999999974 6899999998432 2112233467889999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.+++..  ...+++..+..++.|+++|++|||   +.+++||||||+||+++.++.+|++|||+++......
T Consensus        81 e~~~g~~L~~~l~~--~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~  155 (305)
T cd05609          81 EYVEGGDCATLLKN--IGALPVDMARMYFAETVLALEYLH---NYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSL  155 (305)
T ss_pred             ecCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCchHHEEECCCCCEEEeeCCCccccCcCc
Confidence            99999999999976  346899999999999999999999   7899999999999999999999999999987421110


Q ss_pred             C-------------CCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccc
Q 003296          715 S-------------TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDK  781 (833)
Q Consensus       715 ~-------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~  781 (833)
                      .             ........|+..|+|||++.+..++.++|||||||++|||++|+.||.+... .++....... . 
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~-~~~~~~~~~~-~-  232 (305)
T cd05609         156 TTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTP-EELFGQVISD-D-  232 (305)
T ss_pred             cccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHhc-c-
Confidence            0             0011234688899999999888899999999999999999999999975332 2222211111 0 


Q ss_pred             ccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 003296          782 LDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLL  830 (833)
Q Consensus       782 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~  830 (833)
                         ...+..      ....+.++.+++.+||+.||++||++.++.+.|+
T Consensus       233 ---~~~~~~------~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~  272 (305)
T cd05609         233 ---IEWPEG------DEALPADAQDLISRLLRQNPLERLGTGGAFEVKQ  272 (305)
T ss_pred             ---cCCCCc------cccCCHHHHHHHHHHhccChhhccCccCHHHHHh
Confidence               000000      0123446789999999999999999655555443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=100.00  E-value=4.3e-37  Score=321.40  Aligned_cols=251  Identities=19%  Similarity=0.280  Sum_probs=201.3

Q ss_pred             cCCccccccCcccEEEEEEcC-CCceEEEEEccccchh-hhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          557 ANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKI-FQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      |...+.||+|+||.||+|+.. ++..||+|.+...... ......+.+.+|++++++++||||+++++++...+..++||
T Consensus         2 ~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   81 (258)
T cd06632           2 WRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFL   81 (258)
T ss_pred             ccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEE
Confidence            556789999999999999986 8999999998432211 11123467999999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++++|.+++..  ...+++..+..++.|+++|++|||   +.+|+|+||||+||+++.++.+||+|||++.......
T Consensus        82 e~~~~~~L~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~  156 (258)
T cd06632          82 ELVPGGSLAKLLKK--YGSFPEPVIRLYTRQILLGLEYLH---DRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFS  156 (258)
T ss_pred             EecCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEccCccceeccccc
Confidence            99999999999975  345889999999999999999999   7899999999999999999999999999988764332


Q ss_pred             CCCccccccccccccccccccCCc-ccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMR-VTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                         ......|+..|+|||.+.... ++.++|+|||||++|||++|+.||........... .... .....     +.  
T Consensus       157 ---~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~~~~~~~~-~~~~-~~~~~-----~~--  224 (258)
T cd06632         157 ---FAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEGVAAVFK-IGRS-KELPP-----IP--  224 (258)
T ss_pred             ---cccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCcHHHHHHH-HHhc-ccCCC-----cC--
Confidence               123467899999999987666 89999999999999999999999975543222111 1110 00000     00  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                          ......+.+++.+||+.+|++||++.|++++
T Consensus       225 ----~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~  255 (258)
T cd06632         225 ----DHLSDEAKDFILKCLQRDPSLRPTAAELLEH  255 (258)
T ss_pred             ----CCcCHHHHHHHHHHhhcCcccCcCHHHHhcC
Confidence                1223567789999999999999999999864

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=100.00  E-value=6.2e-37  Score=327.56  Aligned_cols=265  Identities=19%  Similarity=0.217  Sum_probs=201.2

Q ss_pred             cCCccccccCcccEEEEEEcC-CCceEEEEEccccchhh-hccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          557 ANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIF-QLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~-~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      |+..+.||+|+||.||+|... +|+.||||++....... .......+..|++++++++||||+++++++.+++..++||
T Consensus         2 y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   81 (298)
T cd07841           2 YEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLVF   81 (298)
T ss_pred             ceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEEE
Confidence            566788999999999999974 78999999995322110 1223456788999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+ +|+|.+++.... ..++|..+..++.|+++||+|||   ..+|+||||||+||+++.++.+||+|||+++......
T Consensus        82 e~~-~~~L~~~i~~~~-~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~  156 (298)
T cd07841          82 EFM-ETDLEKVIKDKS-IVLTPADIKSYMLMTLRGLEYLH---SNWILHRDLKPNNLLIASDGVLKLADFGLARSFGSPN  156 (298)
T ss_pred             ccc-CCCHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCChhhEEEcCCCCEEEccceeeeeccCCC
Confidence            999 899999997632 36899999999999999999999   7889999999999999999999999999998764332


Q ss_pred             CCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc----------ccc
Q 003296          715 STGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD----------KLD  783 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~----------~~~  783 (833)
                      .  ......+++.|+|||++.+ ..++.++|||||||++|||++|.+||.+................          ...
T Consensus       157 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (298)
T cd07841         157 R--KMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSDIDQLGKIFEALGTPTEENWPGVTSLP  234 (298)
T ss_pred             c--cccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCccHHHHHHHHHHcCCCchhhhhhccccc
Confidence            1  1233467889999998864 45789999999999999999998888755443322111100000          000


Q ss_pred             ccccccccCCc---hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          784 HILDFNVSRTS---LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       784 ~~~~~~~~~~~---~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ...........   ........++.+++.+||+.||++|||++||+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~~  282 (298)
T cd07841         235 DYVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALEH  282 (298)
T ss_pred             ccccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence            00000000000   0011234678899999999999999999999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=100.00  E-value=4.5e-37  Score=327.34  Aligned_cols=255  Identities=19%  Similarity=0.239  Sum_probs=199.7

Q ss_pred             HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecC--
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLAS--  627 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~--  627 (833)
                      .++++|...+.||+|+||.||+|.. .+|+.+|+|++....     .....+.+|+.+++++ +|||+++++++|...  
T Consensus        19 ~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~-----~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~~~   93 (291)
T cd06639          19 DPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS-----DVDEEIEAEYNILQSLPNHPNVVKFYGMFYKADK   93 (291)
T ss_pred             CCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc-----cHHHHHHHHHHHHHHhcCCCCeEEEEEEEEeccc
Confidence            3467788899999999999999997 578999999984221     1235688999999999 799999999999754  


Q ss_pred             ---CceEEEEeeCCCCChhhhhhcC--CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceec
Q 003296          628 ---DSAYLFYEYAPKGTLFDVLHGC--LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIG  702 (833)
Q Consensus       628 ---~~~~lv~ey~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~  702 (833)
                         +..++||||+++|+|.++++..  ....++|..+..++.|++.||+|||   ..+|+||||||+||++++++.+|++
T Consensus        94 ~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dlkp~nili~~~~~~kl~  170 (291)
T cd06639          94 LVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLH---NNRIIHRDVKGNNILLTTEGGVKLV  170 (291)
T ss_pred             cCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEEcCCCCEEEe
Confidence               3589999999999999988642  2346899999999999999999999   7899999999999999999999999


Q ss_pred             cceeeeeeCCCCCCCccccccccccccccccccCC-----cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhc
Q 003296          703 DIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTM-----RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSA  777 (833)
Q Consensus       703 dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~  777 (833)
                      |||+++.......  ......|+..|+|||++...     .++.++|||||||++|||++|+.||............ ..
T Consensus       171 dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~~~~~~~~-~~  247 (291)
T cd06639         171 DFGVSAQLTSTRL--RRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPVKTLFKI-PR  247 (291)
T ss_pred             ecccchhcccccc--cccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCcHHHHHHHH-hc
Confidence            9999886543221  11345789999999987543     3689999999999999999999999754332221111 00


Q ss_pred             ccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          778 QQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        .....+.+         .......+.+++.+||+.+|++||++.|++++
T Consensus       248 --~~~~~~~~---------~~~~~~~l~~li~~~l~~~p~~Rps~~~il~~  287 (291)
T cd06639         248 --NPPPTLLH---------PEKWCRSFNHFISQCLIKDFEARPSVTHLLEH  287 (291)
T ss_pred             --CCCCCCCc---------ccccCHHHHHHHHHHhhcChhhCcCHHHHhcC
Confidence              00011111         11233468899999999999999999999875

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=100.00  E-value=3.2e-37  Score=327.11  Aligned_cols=264  Identities=18%  Similarity=0.219  Sum_probs=200.0

Q ss_pred             cCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      |+..+.||.|++|.||+|... +|..||||++....  ......+.+.+|++++++++|||++++++++..++..|+|||
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e   78 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLET--EDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFE   78 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeeccc--ccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEe
Confidence            456788999999999999974 79999999984221  122334678899999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      |++ ++|.+++.......++|..+..++.|+++||+|||   +.+++||||+|+||+++.++.+|++|||+++.......
T Consensus        79 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH---~~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~  154 (283)
T cd07835          79 FLD-LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCH---SHRVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVR  154 (283)
T ss_pred             ccC-cCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCHHHEEEcCCCcEEEeecccccccCCCcc
Confidence            995 69999998654446899999999999999999999   78999999999999999999999999999976532221


Q ss_pred             CCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccc-------cccc
Q 003296          716 TGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLD-------HILD  787 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~-------~~~~  787 (833)
                        ......++..|+|||++.+. .++.++|||||||++|||++|+.||.......+.............       ...+
T Consensus       155 --~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (283)
T cd07835         155 --TYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSLPD  232 (283)
T ss_pred             --ccCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhhhhhchh
Confidence              11234578999999987654 5789999999999999999999999765443322111100000000       0000


Q ss_pred             -------ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          788 -------FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       788 -------~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                             ...............++.+++.+|++.||++|||++||+++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~  280 (283)
T cd07835         233 YKPTFPKWARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQH  280 (283)
T ss_pred             hhhhcccccccchhhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence                   00000000011223578899999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=6.1e-37  Score=326.07  Aligned_cols=247  Identities=20%  Similarity=0.236  Sum_probs=201.4

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|...+.||+|+||.||+|... +++.||+|++. ..........+.+.+|++++++++||||+++++++...+..++||
T Consensus         2 ~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~-~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   80 (290)
T cd05580           2 DFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILS-KAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVM   80 (290)
T ss_pred             ceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEE-HHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEE
Confidence            4677889999999999999974 78999999984 222222234567899999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.+++..  ...+++..+..++.|++.||.|||   ..+|+||||||+||+++.++.+|++|||+++..... 
T Consensus        81 e~~~~~~L~~~~~~--~~~l~~~~~~~~~~qil~~l~~lH---~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~-  154 (290)
T cd05580          81 EYVPGGELFSHLRK--SGRFPEPVARFYAAQVVLALEYLH---SLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGR-  154 (290)
T ss_pred             ecCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEECCCCCEEEeeCCCccccCCC-
Confidence            99999999999976  356899999999999999999999   789999999999999999999999999999876433 


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCc
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS  794 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (833)
                          .....|++.|+|||.+.+..++.++|||||||++|||++|+.||........+.. .. . ..      ..++.  
T Consensus       155 ----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~-~~-~-~~------~~~~~--  219 (290)
T cd05580         155 ----TYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNPIQIYEK-IL-E-GK------VRFPS--  219 (290)
T ss_pred             ----CCCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHH-Hh-c-CC------ccCCc--
Confidence                1345789999999999888889999999999999999999999975442211111 11 1 00      00111  


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296          795 LAVRSQMLTVLKVAVACVSVSPEARP-----KMKSVLRM  828 (833)
Q Consensus       795 ~~~~~~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~  828 (833)
                          .....+.+++.+||+.||.+||     +++|++++
T Consensus       220 ----~~~~~l~~li~~~l~~~p~~R~~~~~~~~~~l~~~  254 (290)
T cd05580         220 ----FFSPDAKDLIRNLLQVDLTKRLGNLKNGVNDIKNH  254 (290)
T ss_pred             ----cCCHHHHHHHHHHccCCHHHccCcccCCHHHHHcC
Confidence                1234677899999999999999     77787654

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=100.00  E-value=5.5e-37  Score=325.89  Aligned_cols=264  Identities=19%  Similarity=0.212  Sum_probs=202.7

Q ss_pred             cCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      |+..+.||+|+||.||+|.. .+|..||||++....  ......+.+.+|++++++++||||+++++++..++..++|||
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~--~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e   79 (286)
T cd07832           2 YKILGRIGEGAHGIVFKAKDRETGETVALKKVALRR--LEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVME   79 (286)
T ss_pred             ceEEeecccCCCcEEEEEEECCCCceEEEEEEEccc--ccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEec
Confidence            66778999999999999997 478999999984322  112335689999999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      |+ +++|.+++.... ..+++.++..++.|+++||+|||   +.+|+|+||||+||+++.++.++++|||++........
T Consensus        80 ~~-~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~  154 (286)
T cd07832          80 YM-PSDLSEVLRDEE-RPLPEAQVKSYMRMLLKGVAYMH---ANGIMHRDLKPANLLISADGVLKIADFGLARLFSEEEP  154 (286)
T ss_pred             cc-CCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcCHHHEEEcCCCcEEEeeeeecccccCCCC
Confidence            99 999999987542 56899999999999999999999   78899999999999999999999999999987643321


Q ss_pred             CCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhh--cccc-----------c
Q 003296          716 TGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNS--AQQD-----------K  781 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~--~~~~-----------~  781 (833)
                       .......|+..|+|||++.+. .++.++||||+||++|||+||++||.+......+.....  ....           .
T Consensus       155 -~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (286)
T cd07832         155 -RLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGENDIEQLAIVFRTLGTPNEETWPGLTSLPD  233 (286)
T ss_pred             -CccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCHHHHHHHHHHHcCCCChHHHhhccCcch
Confidence             112345789999999988654 468999999999999999999888875544333221111  0000           0


Q ss_pred             ccccccccccCC--chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          782 LDHILDFNVSRT--SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       782 ~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ...+..+.....  ..........+.+++.+|++.||++|||++|+++|
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~h  282 (286)
T cd07832         234 YNKITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALRH  282 (286)
T ss_pred             hhcccCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence            000000000000  00001234678899999999999999999999875

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=100.00  E-value=5.4e-37  Score=326.72  Aligned_cols=250  Identities=22%  Similarity=0.302  Sum_probs=202.4

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ..|+..+.+|+|+||.||+|.. .++..||+|.+...    .....+.+.+|+.++++++||||++++++|...+..|+|
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~----~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv   94 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQ----QQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVV   94 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccc----cchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEE
Confidence            5677889999999999999986 47899999998422    122346789999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      +||+++|+|.+++.+   ..+++.++..++.|++.|+.|||   +.+++||||||+||+++.++.+||+|||++......
T Consensus        95 ~e~~~~~~L~~~~~~---~~l~~~~~~~i~~~l~~al~~LH---~~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~  168 (293)
T cd06647          95 MEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE  168 (293)
T ss_pred             EecCCCCcHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHH---hCCEeeccCCHHHEEEcCCCCEEEccCcceeccccc
Confidence            999999999999874   35789999999999999999999   789999999999999999999999999998765433


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      ..  ......|++.|+|||++....++.++|||||||++||+++|+.||............ ... .        .  ..
T Consensus       169 ~~--~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~~~~~~-~~~-~--------~--~~  234 (293)
T cd06647         169 QS--KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLI-ATN-G--------T--PE  234 (293)
T ss_pred             cc--ccccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChhhheeeh-hcC-C--------C--CC
Confidence            22  123356899999999988888999999999999999999999999754332211000 000 0        0  00


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ..........+.+++.+||+.+|++||++.|++.|
T Consensus       235 ~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~h  269 (293)
T cd06647         235 LQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQH  269 (293)
T ss_pred             CCCccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            00111234567889999999999999999999876

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=100.00  E-value=4.7e-37  Score=320.95  Aligned_cols=251  Identities=23%  Similarity=0.319  Sum_probs=202.0

Q ss_pred             cCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      |...+.+|+|+||.||+|... +|..||+|.+... . ......+.+.+|++++++++||||+++++++...+..++|||
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~-~-~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e   79 (257)
T cd08225           2 YEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLT-K-MPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVME   79 (257)
T ss_pred             ceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHh-h-ccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEe
Confidence            667789999999999999975 6899999998422 1 122345678899999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC-CceeccceeeeeeCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK-EPQIGDIELCKVIDPSK  714 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~-~~ki~dfgl~~~~~~~~  714 (833)
                      |+++++|.+++.......++|..+..++.|+++||+|||   ..+++|+||||+||++++++ .+|++|||.+.......
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~  156 (257)
T cd08225          80 YCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIH---DRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSM  156 (257)
T ss_pred             cCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEEcCCCCeEEecccccchhccCCc
Confidence            999999999998654456899999999999999999999   77899999999999999875 46999999987664322


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCc
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS  794 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (833)
                      .  ......|++.|+|||+..+..++.++|||||||++|||++|+.||.... ..+++......  .....     .   
T Consensus       157 ~--~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~-~~~~~~~~~~~--~~~~~-----~---  223 (257)
T cd08225         157 E--LAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNN-LHQLVLKICQG--YFAPI-----S---  223 (257)
T ss_pred             c--cccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCcc-HHHHHHHHhcc--cCCCC-----C---
Confidence            1  1233568999999999988889999999999999999999999996433 23333222111  11110     0   


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          795 LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       795 ~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                         .....++.+++.+|++.+|++|||+.|++++
T Consensus       224 ---~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~  254 (257)
T cd08225         224 ---PNFSRDLRSLISQLFKVSPRDRPSITSILKR  254 (257)
T ss_pred             ---CCCCHHHHHHHHHHhccChhhCcCHHHHhhC
Confidence               1123467899999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=100.00  E-value=9.7e-37  Score=322.25  Aligned_cols=249  Identities=18%  Similarity=0.291  Sum_probs=201.4

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +-|+..+.||+|+||.||+|.. .++..||||......   .....+.|.+|++++++++||||+++++++..++..++|
T Consensus         4 ~~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   80 (277)
T cd06641           4 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEE---AEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWII   80 (277)
T ss_pred             HhhhhheeEeecCCeEEEEEEECCCCcEEEEEEecccc---chHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEE
Confidence            4567788999999999999986 478999999874221   112346789999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++..   ..+++..+..++.|++.|+.|||   ..+++|+||||+||+++.++.++++|||+++.....
T Consensus        81 ~e~~~~~~l~~~i~~---~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~  154 (277)
T cd06641          81 MEYLGGGSALDLLEP---GPLDETQIATILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDT  154 (277)
T ss_pred             EEeCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHc---cCCeecCCCCHHhEEECCCCCEEEeecccceecccc
Confidence            999999999999874   35899999999999999999999   789999999999999999999999999998866432


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      ..  ......|+..|+|||+..+..++.++|||||||++|||++|+.||...... .+....... . . .    .+   
T Consensus       155 ~~--~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~-~~~~~~~~~-~-~-~----~~---  221 (277)
T cd06641         155 QI--KRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHPM-KVLFLIPKN-N-P-P----TL---  221 (277)
T ss_pred             hh--hhccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccchH-HHHHHHhcC-C-C-C----CC---
Confidence            21  113356899999999998888899999999999999999999999743321 111111100 0 0 0    00   


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                         ......++.+++.+||+.+|++||++.|++++
T Consensus       222 ---~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~  253 (277)
T cd06641         222 ---EGNYSKPLKEFVEACLNKEPSFRPTAKELLKH  253 (277)
T ss_pred             ---CcccCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence               01234567899999999999999999999985

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-38  Score=302.65  Aligned_cols=249  Identities=16%  Similarity=0.242  Sum_probs=197.4

Q ss_pred             CccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCCceEEEEee
Q 003296          559 PLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASDSAYLFYEY  636 (833)
Q Consensus       559 ~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~~~~lv~ey  636 (833)
                      ....+|.|+.|.|++++. .+|..+|||.+.+...   ....++....++++.+-+ .|.||+.+|||..+..+++.||.
T Consensus        96 ~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~N---kee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMel  172 (391)
T KOG0983|consen   96 NLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGN---KEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICMEL  172 (391)
T ss_pred             hHHhhcCCCccceEEEEEcccceEEEEEeecccCC---HHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHHH
Confidence            456899999999999996 4799999999953332   234577888888887775 89999999999999999999999


Q ss_pred             CCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCC
Q 003296          637 APKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST  716 (833)
Q Consensus       637 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~  716 (833)
                      |.. -...+++. -..++++...-++...+++||.||.+  .++|||||+||+|||+|+.|.+|++|||++..+.+....
T Consensus       173 Ms~-C~ekLlkr-ik~piPE~ilGk~tva~v~AL~YLKe--KH~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSkAh  248 (391)
T KOG0983|consen  173 MST-CAEKLLKR-IKGPIPERILGKMTVAIVKALYYLKE--KHGVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSKAH  248 (391)
T ss_pred             HHH-HHHHHHHH-hcCCchHHhhhhhHHHHHHHHHHHHH--hcceeecccCccceEEccCCCEEeecccccceeeccccc
Confidence            853 45555543 34568888888899999999999986  678999999999999999999999999999887654422


Q ss_pred             Ccccccccccccccccccc---CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          717 GSLSTVAGSVGYIPPEYAY---TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       717 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                         +..+|.+.|||||.+.   ..+|+-++|||||||.++|+.||+.||.+.+...+.......+ +.  ..++..    
T Consensus       249 ---trsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~tdFe~ltkvln~-eP--P~L~~~----  318 (391)
T KOG0983|consen  249 ---TRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTDFEVLTKVLNE-EP--PLLPGH----  318 (391)
T ss_pred             ---ccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCccHHHHHHHHhc-CC--CCCCcc----
Confidence               4568999999999886   3469999999999999999999999998654433333222221 11  111111    


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                          ...+..+.+++..||.+|+.+||.-.++++|
T Consensus       319 ----~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~h  349 (391)
T KOG0983|consen  319 ----MGFSPDFQSFVKDCLTKDHRKRPKYNKLLEH  349 (391)
T ss_pred             ----cCcCHHHHHHHHHHhhcCcccCcchHHHhcC
Confidence                1245678899999999999999999998875

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=100.00  E-value=3.2e-37  Score=325.94  Aligned_cols=244  Identities=17%  Similarity=0.180  Sum_probs=188.1

Q ss_pred             ccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHh---cCCCCCcccceEEEecCCceEEEEeeC
Q 003296          562 VELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLG---KLSNSNVMTPLAYVLASDSAYLFYEYA  637 (833)
Q Consensus       562 ~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~---~l~H~niv~~~~~~~~~~~~~lv~ey~  637 (833)
                      +||+|+||.||++.. .+|+.||||.+... ........+.+.+|..+++   ..+||||+.+++++..++..++||||+
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~   79 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKK-RIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLM   79 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEcc-ccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecC
Confidence            489999999999997 47899999998422 1111122234555554444   347999999999999999999999999


Q ss_pred             CCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCC
Q 003296          638 PKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG  717 (833)
Q Consensus       638 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~  717 (833)
                      ++|+|.+++..  ...++|..+..++.|++.||+|||   +.+|+||||||+||++++++.+|++|||++.......   
T Consensus        80 ~~~~L~~~i~~--~~~l~~~~~~~i~~qi~~al~~lH---~~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~---  151 (279)
T cd05633          80 NGGDLHYHLSQ--HGVFSEKEMRFYATEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK---  151 (279)
T ss_pred             CCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCcCCCCCCHHHEEECCCCCEEEccCCcceeccccC---
Confidence            99999999875  346999999999999999999999   7889999999999999999999999999987553222   


Q ss_pred             cccccccccccccccccc-CCcccccCcchhhHHHHHHHHhCCCcccCCcc-HHHHHHHhhcccccccccccccccCCch
Q 003296          718 SLSTVAGSVGYIPPEYAY-TMRVTMAGNVYSFGVILLELLTGKTAVNQGNE-LAKWVLRNSAQQDKLDHILDFNVSRTSL  795 (833)
Q Consensus       718 ~~~~~~gt~~y~aPE~~~-~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  795 (833)
                       .....||..|+|||+.. +..++.++|||||||++|||++|+.||..... ...........       ....+     
T Consensus       152 -~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~-------~~~~~-----  218 (279)
T cd05633         152 -PHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLT-------VNVEL-----  218 (279)
T ss_pred             -ccCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcCHHHHHHHhhc-------CCcCC-----
Confidence             12357999999999886 45689999999999999999999999974321 11111111000       01111     


Q ss_pred             hHHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296          796 AVRSQMLTVLKVAVACVSVSPEARP-----KMKSVLRM  828 (833)
Q Consensus       796 ~~~~~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~  828 (833)
                       ......++.+++.+|+..||++||     +++|+++|
T Consensus       219 -~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~h  255 (279)
T cd05633         219 -PDSFSPELKSLLEGLLQRDVSKRLGCLGRGAQEVKEH  255 (279)
T ss_pred             -ccccCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHhC
Confidence             112345778999999999999999     69999876

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=100.00  E-value=3.4e-37  Score=323.60  Aligned_cols=250  Identities=19%  Similarity=0.240  Sum_probs=202.4

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|+..+.||+|+||.||+|... +++.||+|++.....   ....+++.+|++++++++||||+++++++..++..++|+
T Consensus         2 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~---~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   78 (265)
T cd06605           2 DLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEIN---EAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICM   78 (265)
T ss_pred             cchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccC---hHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEE
Confidence            4667789999999999999975 789999999843211   134567999999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCC-CCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTS-NPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~-~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||+++++|.+++.... ..+++.....++.|+++|++|+|   + .+++||||||+||++++++.+|++|||.+......
T Consensus        79 e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH---~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~  154 (265)
T cd06605          79 EYMDGGSLDKILKEVQ-GRIPERILGKIAVAVLKGLTYLH---EKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNS  154 (265)
T ss_pred             EecCCCcHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHc---CCCCeecCCCCHHHEEECCCCCEEEeecccchhhHHH
Confidence            9999999999998642 56889999999999999999999   6 89999999999999999999999999998765322


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCc----cHHHHHHHhhccccccccccccc
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGN----ELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      ..    ....|+..|+|||++.+..++.++|||||||++|||++|+.||....    .....+...... ..      +.
T Consensus       155 ~~----~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~------~~  223 (265)
T cd06605         155 LA----KTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNE-PP------PR  223 (265)
T ss_pred             Hh----hcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCccccccccHHHHHHHHhcC-CC------CC
Confidence            11    12678999999999988899999999999999999999999997542    222222111111 00      00


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .   .  ......++.+++.+||..||++|||+.|++.+
T Consensus       224 ~---~--~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  257 (265)
T cd06605         224 L---P--SGKFSPDFQDFVNLCLIKDPRERPSYKELLEH  257 (265)
T ss_pred             C---C--hhhcCHHHHHHHHHHcCCCchhCcCHHHHhhC
Confidence            0   0  01145568899999999999999999999864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=100.00  E-value=5.1e-37  Score=326.50  Aligned_cols=265  Identities=18%  Similarity=0.219  Sum_probs=202.4

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      .|+..+.||+|+||.||+|... +++.||||+++...  ......+.+.+|++++++++||||+++++++..++..++||
T Consensus         2 ~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~--~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~   79 (288)
T cd07833           2 KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESE--DDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVF   79 (288)
T ss_pred             ceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhc--ccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEE
Confidence            4777889999999999999975 68999999984221  12234578999999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||++++.+..+...  ...+++.++..++.|++.|++|||   ..+++|||+||+||++++++.+|++|||++.......
T Consensus        80 e~~~~~~l~~~~~~--~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~  154 (288)
T cd07833          80 EYVERTLLELLEAS--PGGLPPDAVRSYIWQLLQAIAYCH---SHNIIHRDIKPENILVSESGVLKLCDFGFARALRARP  154 (288)
T ss_pred             ecCCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCCEEEEeeecccccCCCc
Confidence            99998777766554  345899999999999999999999   7889999999999999999999999999998765433


Q ss_pred             CCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhh--cc-----------cc
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNS--AQ-----------QD  780 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~--~~-----------~~  780 (833)
                      . .......|+..|+|||++.+. .++.++|||||||++|||++|+.||.+............  ..           ..
T Consensus       155 ~-~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (288)
T cd07833         155 A-SPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNP  233 (288)
T ss_pred             c-ccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHhhhcccCc
Confidence            2 122346789999999999887 789999999999999999999999975443322111000  00           00


Q ss_pred             ccc--ccccccccCC--chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          781 KLD--HILDFNVSRT--SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       781 ~~~--~~~~~~~~~~--~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ...  ...+......  .......+.++.+++.+||+.+|++|||+++++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  285 (288)
T cd07833         234 RFAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQH  285 (288)
T ss_pred             cccccccCCCCCcHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHHhcC
Confidence            000  0000000000  00001125678999999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.9e-37  Score=321.83  Aligned_cols=255  Identities=19%  Similarity=0.267  Sum_probs=201.8

Q ss_pred             HHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCC-
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASD-  628 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~-  628 (833)
                      ..++.|+..+.+|+|+||.||+|... +++.||+|++....     ...+.|.+|+++++++ +||||++++++|.... 
T Consensus         3 ~~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~-----~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~   77 (275)
T cd06608           3 DPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIE-----DEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNP   77 (275)
T ss_pred             CchhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCc-----hhHHHHHHHHHHHHHhcCCCChheEEEEEEecCC
Confidence            34678889999999999999999974 68899999984221     1346799999999999 6999999999997654 


Q ss_pred             -----ceEEEEeeCCCCChhhhhhcCC--CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCcee
Q 003296          629 -----SAYLFYEYAPKGTLFDVLHGCL--ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQI  701 (833)
Q Consensus       629 -----~~~lv~ey~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki  701 (833)
                           ..++||||+++++|.+++....  ...+++..+..++.|++.||.|||   +.+++|+||+|+||++++++.+|+
T Consensus        78 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH---~~~i~H~~l~p~ni~~~~~~~~~l  154 (275)
T cd06608          78 PGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLH---ENKVIHRDIKGQNILLTKNAEVKL  154 (275)
T ss_pred             CCcceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHHHEEEccCCeEEE
Confidence                 4899999999999999987533  356899999999999999999999   789999999999999999999999


Q ss_pred             ccceeeeeeCCCCCCCccccccccccccccccccC-----CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhh
Q 003296          702 GDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT-----MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNS  776 (833)
Q Consensus       702 ~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~  776 (833)
                      +|||++........  ......|+..|+|||++..     ..++.++|||||||++|||++|+.||............ .
T Consensus       155 ~d~~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~-~  231 (275)
T cd06608         155 VDFGVSAQLDSTLG--RRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHPMRALFKI-P  231 (275)
T ss_pred             CCCccceecccchh--hhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccchHHHHHHh-h
Confidence            99999876543221  2234578999999998753     34788999999999999999999999754332221111 0


Q ss_pred             cccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          777 AQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .  ...     +...    .......++.+++.+||+.||++|||+.|++++
T Consensus       232 ~--~~~-----~~~~----~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~~  272 (275)
T cd06608         232 R--NPP-----PTLK----SPENWSKKFNDFISECLIKNYEQRPFMEELLEH  272 (275)
T ss_pred             c--cCC-----CCCC----chhhcCHHHHHHHHHHhhcChhhCcCHHHHhcC
Confidence            0  000     0111    111244578899999999999999999999874

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=100.00  E-value=8e-37  Score=320.59  Aligned_cols=255  Identities=20%  Similarity=0.320  Sum_probs=202.9

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec--CCceEE
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA--SDSAYL  632 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~--~~~~~l  632 (833)
                      +|+..+.+|.|+||.||+|.. .+|+.||+|.+.....  .....+.+.+|++++++++||||+++++++..  +...++
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   78 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNM--TEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYI   78 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccC--CHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEE
Confidence            366778999999999999986 4789999999842211  12234678899999999999999999998864  345899


Q ss_pred             EEeeCCCCChhhhhhcCC--CCCCCHHHHHHHHHHHHHHHHhhhcCC--CCCeeecCCCccceeeCCCCCceeccceeee
Q 003296          633 FYEYAPKGTLFDVLHGCL--ENALDWASRYSIAVGVAQGLAFLHGFT--SNPILLLDLSTRNIFLKSLKEPQIGDIELCK  708 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~~l~ylH~~~--~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~  708 (833)
                      ||||+++|+|.+++....  ...+++..++.++.|++.||+|||..+  ..+++||||||+||+++.++.+|++|||++.
T Consensus        79 ~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~  158 (265)
T cd08217          79 VMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAK  158 (265)
T ss_pred             EehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEecccccc
Confidence            999999999999997532  346899999999999999999999554  6789999999999999999999999999998


Q ss_pred             eeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          709 VIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       709 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      .......  ......|++.|+|||++.+..++.++|||||||++|||++|+.||.... ........ .. ....     
T Consensus       159 ~~~~~~~--~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~-~~~~~~~~-~~-~~~~-----  228 (265)
T cd08217         159 ILGHDSS--FAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARN-QLQLASKI-KE-GKFR-----  228 (265)
T ss_pred             cccCCcc--cccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcC-HHHHHHHH-hc-CCCC-----
Confidence            7654332  1234578999999999988889999999999999999999999997543 22222111 11 0000     


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .+      ....+.++.+++.+|++.+|++||++.||+++
T Consensus       229 ~~------~~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~~  262 (265)
T cd08217         229 RI------PYRYSSELNEVIKSMLNVDPDKRPSTEELLQL  262 (265)
T ss_pred             CC------ccccCHHHHHHHHHHccCCcccCCCHHHHhhC
Confidence            01      11234578899999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=100.00  E-value=5.9e-37  Score=325.15  Aligned_cols=251  Identities=14%  Similarity=0.192  Sum_probs=193.6

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHH-HhcCCCCCcccceEEEecCCceEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEV-LGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~-l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +|+..+.||+|+||.||+|+.. +|+.||+|+++....   ......+..|+.+ ++..+|||||++++++..++..|+|
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv   78 (283)
T cd06617           2 DLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVN---SQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWIC   78 (283)
T ss_pred             CceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCC---cHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEE
Confidence            5777889999999999999974 799999999842211   1123456677775 5667899999999999999999999


Q ss_pred             EeeCCCCChhhhhhcC--CCCCCCHHHHHHHHHHHHHHHHhhhcCCCC-CeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          634 YEYAPKGTLFDVLHGC--LENALDWASRYSIAVGVAQGLAFLHGFTSN-PILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~-~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      |||++ |+|.+++...  ....+++..+..++.|++.||+|||   +. +++||||||+||+++.++.+||+|||+++..
T Consensus        79 ~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~  154 (283)
T cd06617          79 MEVMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLH---SKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYL  154 (283)
T ss_pred             hhhhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCCHHHEEECCCCCEEEeeccccccc
Confidence            99997 6888887642  2346899999999999999999999   54 8999999999999999999999999998865


Q ss_pred             CCCCCCCccccccccccccccccccC----CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc
Q 003296          711 DPSKSTGSLSTVAGSVGYIPPEYAYT----MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL  786 (833)
Q Consensus       711 ~~~~~~~~~~~~~gt~~y~aPE~~~~----~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  786 (833)
                      ....   ......|+..|+|||++.+    ..++.++|||||||++|||++|+.||.......+........  .     
T Consensus       155 ~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~--~-----  224 (283)
T cd06617         155 VDSV---AKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQLKQVVEE--P-----  224 (283)
T ss_pred             cccc---ccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCccccCHHHHHHHHhc--C-----
Confidence            3221   1133568999999998764    457899999999999999999999997432221111111100  0     


Q ss_pred             cccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          787 DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       787 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .+...     ....+.++.+++.+||+.+|++||++.|++++
T Consensus       225 ~~~~~-----~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~  261 (283)
T cd06617         225 SPQLP-----AEKFSPEFQDFVNKCLKKNYKERPNYPELLQH  261 (283)
T ss_pred             CCCCC-----ccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            00010     01234568899999999999999999999874

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=9.4e-38  Score=338.02  Aligned_cols=253  Identities=22%  Similarity=0.301  Sum_probs=203.4

Q ss_pred             cCCccccccCcccEEEEEEc-CCC----ceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296          557 ANPLNVELKTRFSTYYKAVM-PSG----MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~-~~~----~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~  631 (833)
                      .+...+||+|+||+||||.+ ++|    .+||||++...   ...+..++|..|+-+|++++|||+++++|+|.... ..
T Consensus       698 lkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~---t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~q  773 (1177)
T KOG1025|consen  698 LKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEF---TSPKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQ  773 (1177)
T ss_pred             hhhhceeccccceeEEeeeEecCCceecceeEEEEeecc---CCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HH
Confidence            34567999999999999986 555    46899998422   22334678999999999999999999999998766 88


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      ||++|||.|+|.|+++.. +..+.-...+.|..|||+|+.|||   ..++|||||-.+|||+.+-..+||.|||+++...
T Consensus       774 lvtq~mP~G~LlDyvr~h-r~~igsq~lLnw~~QIAkgM~YLe---~qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~  849 (1177)
T KOG1025|consen  774 LVTQLMPLGCLLDYVREH-RDNIGSQDLLNWCYQIAKGMKYLE---EQRLVHRDLAARNVLVKSPNHVKITDFGLAKLLA  849 (1177)
T ss_pred             HHHHhcccchHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHH---hcchhhhhhhhhheeecCCCeEEEEecchhhccC
Confidence            999999999999999875 346888889999999999999999   8899999999999999999999999999999987


Q ss_pred             CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                      ..+..-......-.+.|||=|.+....|+.++|||||||++||++| |..|+++..  .+.+......++++        
T Consensus       850 ~d~~ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~--~~eI~dlle~geRL--------  919 (1177)
T KOG1025|consen  850 PDEKEYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIP--AEEIPDLLEKGERL--------  919 (1177)
T ss_pred             cccccccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCC--HHHhhHHHhccccC--------
Confidence            6554333333444678999999999999999999999999999998 899997432  11122222222221        


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                      +.    +.....++..++.+||..|++.||++++......+
T Consensus       920 sq----PpiCtiDVy~~mvkCwmid~~~rp~fkel~~~fs~  956 (1177)
T KOG1025|consen  920 SQ----PPICTIDVYMVMVKCWMIDADSRPTFKELAEEFSR  956 (1177)
T ss_pred             CC----CCCccHHHHHHHHHHhccCcccCccHHHHHHHHHH
Confidence            11    12345577888999999999999999999877654

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=7e-37  Score=325.09  Aligned_cols=256  Identities=18%  Similarity=0.191  Sum_probs=199.5

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC--CceEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS--DSAYL  632 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~--~~~~l  632 (833)
                      +|+..+.||.|++|.||+|... +++.||+|.+.....   .....++.+|++++++++|||||+++++|...  +..++
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~l   78 (287)
T cd06621           2 KIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPN---PDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGI   78 (287)
T ss_pred             ceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCc---hHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEE
Confidence            4677889999999999999984 789999999842211   12346799999999999999999999998754  46899


Q ss_pred             EEeeCCCCChhhhhhcC--CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          633 FYEYAPKGTLFDVLHGC--LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      ||||+++|+|.+++...  ....+++.....++.|++.||+|||   ..+++|+||+|+||+++.++.++++|||++...
T Consensus        79 v~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH---~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~  155 (287)
T cd06621          79 AMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLH---SRKIIHRDIKPSNILLTRKGQVKLCDFGVSGEL  155 (287)
T ss_pred             EEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEecCCeEEEeeccccccc
Confidence            99999999999987642  2346889999999999999999999   789999999999999999999999999998765


Q ss_pred             CCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCc----cHHHHHHHhhcccccccccc
Q 003296          711 DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGN----ELAKWVLRNSAQQDKLDHIL  786 (833)
Q Consensus       711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~----~~~~~~~~~~~~~~~~~~~~  786 (833)
                      .....    ....++..|+|||...+..++.++||||+||++|||++|+.||....    ...+........ ..     
T Consensus       156 ~~~~~----~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~-----  225 (287)
T cd06621         156 VNSLA----GTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNM-PN-----  225 (287)
T ss_pred             ccccc----ccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcC-Cc-----
Confidence            32221    23567889999999988889999999999999999999999997542    111111111110 00     


Q ss_pred             cccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          787 DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       787 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                       +............+.++.+++.+||+.+|++|||+.||+++
T Consensus       226 -~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~eil~~  266 (287)
T cd06621         226 -PELKDEPGNGIKWSEEFKDFIKQCLEKDPTRRPTPWDMLEH  266 (287)
T ss_pred             -hhhccCCCCCCchHHHHHHHHHHHcCCCcccCCCHHHHHhC
Confidence             00000000001234578899999999999999999999874

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=100.00  E-value=1.2e-36  Score=322.68  Aligned_cols=248  Identities=14%  Similarity=0.243  Sum_probs=199.7

Q ss_pred             cCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      |+..+.||+|++|.||+|.. .+++.||+|++....    ....+.+.+|+.++++++||||+++++++...+..++|+|
T Consensus        21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~----~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e   96 (285)
T cd06648          21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRK----QQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVME   96 (285)
T ss_pred             hhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccc----hhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEe
Confidence            44567999999999999996 478999999984221    1234568999999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      |+++++|.+++..   ..+++.++..++.|++.|++|||   +.+|+||||||+||+++.++.+|++|||++........
T Consensus        97 ~~~~~~L~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~  170 (285)
T cd06648          97 FLEGGALTDIVTH---TRMNEEQIATVCLAVLKALSFLH---AQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVP  170 (285)
T ss_pred             ccCCCCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCChhhEEEcCCCcEEEcccccchhhccCCc
Confidence            9999999999875   35899999999999999999999   78999999999999999999999999998875532221


Q ss_pred             CCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCch
Q 003296          716 TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSL  795 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  795 (833)
                        ......|++.|+|||+..+..++.++|||||||++|||++|+.||........ .......  ..     +....   
T Consensus       171 --~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~~~~-~~~~~~~--~~-----~~~~~---  237 (285)
T cd06648         171 --RRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQA-MKRIRDN--LP-----PKLKN---  237 (285)
T ss_pred             --ccccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCHHHH-HHHHHhc--CC-----CCCcc---
Confidence              11335689999999999888899999999999999999999999975443222 1111111  00     00000   


Q ss_pred             hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          796 AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       796 ~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                       .......+.+++.+||+.+|++||++.|++++
T Consensus       238 -~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~  269 (285)
T cd06648         238 -LHKVSPRLRSFLDRMLVRDPAQRATAAELLNH  269 (285)
T ss_pred             -cccCCHHHHHHHHHHcccChhhCcCHHHHccC
Confidence             01133568899999999999999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=100.00  E-value=1.2e-36  Score=320.11  Aligned_cols=255  Identities=18%  Similarity=0.278  Sum_probs=201.0

Q ss_pred             cCCccccccCcccEEEEEEc-CCCceEEEEEccccch--hhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          557 ANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDK--IFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~--~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      |+..+.||+|+||.||+|.. .+|+.||+|.+.....  .......+.+.+|++++++++|||||++++++.+.+..++|
T Consensus         2 ~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~v   81 (268)
T cd06630           2 WLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNLF   81 (268)
T ss_pred             ccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEEE
Confidence            66778999999999999996 5789999999852211  11112346799999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC-CceeccceeeeeeCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK-EPQIGDIELCKVIDP  712 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~-~~ki~dfgl~~~~~~  712 (833)
                      |||+++|+|.+++..  ...+++..+..++.|++.||+|||   +.+++||||||+||+++.++ .+|++|||.+.....
T Consensus        82 ~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~ql~~al~~LH---~~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~  156 (268)
T cd06630          82 VEWMAGGSVSHLLSK--YGAFKEAVIINYTEQLLRGLSYLH---ENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAA  156 (268)
T ss_pred             EeccCCCcHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEEccccccccccc
Confidence            999999999999975  346899999999999999999999   78999999999999998776 589999999877643


Q ss_pred             CCCC--CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccH--HHHHHHhhcccccccccccc
Q 003296          713 SKST--GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNEL--AKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       713 ~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ....  .......||..|+|||++.+..++.++||||+||++|||++|+.||......  ..........      ... 
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~------~~~-  229 (268)
T cd06630         157 KGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKIASA------TTA-  229 (268)
T ss_pred             ccccCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcchHHHHHHHhcc------CCC-
Confidence            2211  1112356899999999998888999999999999999999999999643221  1111110000      000 


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                           .........++.+++.+|++.+|++||++.|++++
T Consensus       230 -----~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~~  264 (268)
T cd06630         230 -----PSIPEHLSPGLRDVTLRCLELQPEDRPPSRELLKH  264 (268)
T ss_pred             -----CCCchhhCHHHHHHHHHHcCCCcccCcCHHHHhcC
Confidence                 01112344678899999999999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=100.00  E-value=8.9e-37  Score=325.84  Aligned_cols=265  Identities=18%  Similarity=0.175  Sum_probs=198.6

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCCc----
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASDS----  629 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~~----  629 (833)
                      +|+..+.||+|+||.||+|... +|+.||||++....  ......+.+.+|++++++++ ||||+++++++...+.    
T Consensus         2 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~--~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~   79 (295)
T cd07837           2 AYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEM--DEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKP   79 (295)
T ss_pred             CceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhc--cccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCc
Confidence            5778899999999999999974 79999999984221  12223467899999999995 6999999999987665    


Q ss_pred             -eEEEEeeCCCCChhhhhhcCC---CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC-CCCceeccc
Q 003296          630 -AYLFYEYAPKGTLFDVLHGCL---ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS-LKEPQIGDI  704 (833)
Q Consensus       630 -~~lv~ey~~~g~L~~~l~~~~---~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~-~~~~ki~df  704 (833)
                       .|+||||+++ +|.+++....   ...+++..+..++.|+++||+|||   ..+|+||||||+||+++. ++.+|++||
T Consensus        80 ~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~i~H~dl~~~nil~~~~~~~~kl~df  155 (295)
T cd07837          80 SLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCH---KHGVMHRDLKPQNLLVDKQKGLLKIADL  155 (295)
T ss_pred             eEEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChHHEEEecCCCeEEEeec
Confidence             8999999985 8999886432   235899999999999999999999   789999999999999998 889999999


Q ss_pred             eeeeeeCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccc
Q 003296          705 ELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLD  783 (833)
Q Consensus       705 gl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~  783 (833)
                      |+++.......  ......+++.|+|||++.+ ..++.++|||||||++|||++|..||.+...................
T Consensus       156 g~~~~~~~~~~--~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~  233 (295)
T cd07837         156 GLGRAFSIPVK--SYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQLLHIFKLLGTPTE  233 (295)
T ss_pred             ccceecCCCcc--ccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCCCh
Confidence            99986533221  1123467889999998865 45789999999999999999999999765544333221111000000


Q ss_pred             ccc----c-------ccccCC--chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          784 HIL----D-------FNVSRT--SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       784 ~~~----~-------~~~~~~--~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ...    +       +.....  .........++.+++.+||+.||++||++.|++.+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~~  291 (295)
T cd07837         234 QVWPGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALTH  291 (295)
T ss_pred             hhCcchhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhcC
Confidence            000    0       000000  00011234678899999999999999999999864

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=100.00  E-value=2e-36  Score=316.25  Aligned_cols=251  Identities=20%  Similarity=0.297  Sum_probs=199.5

Q ss_pred             CCccccccCcccEEEEEEcCC-----CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          558 NPLNVELKTRFSTYYKAVMPS-----GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       558 ~~~~~ig~g~~g~vy~~~~~~-----~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      ...+.||.|+||.||+|+..+     +..||+|++.....   ....+.+.+|++++++++||||+++++++...+..++
T Consensus         2 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   78 (258)
T smart00219        2 TLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDAD---EQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMI   78 (258)
T ss_pred             cccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCC---hHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEE
Confidence            456789999999999999753     48899999942211   1145789999999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||||+++|+|.+++.......++|.++..++.|++.|++|||   +.+++||||||+||+++.++.++++|||+++....
T Consensus        79 i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh---~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~  155 (258)
T smart00219       79 VMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLE---SKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYD  155 (258)
T ss_pred             EEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHh---cCCeeecccccceEEEccCCeEEEcccCCceeccc
Confidence            999999999999998643333899999999999999999999   78999999999999999999999999999987654


Q ss_pred             CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      ...... ....+++.|+|||...+..++.++||||+||++|||++ |+.||..... .......... ...      .. 
T Consensus       156 ~~~~~~-~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~~-~~~~~~~~~~-~~~------~~-  225 (258)
T smart00219      156 DDYYKK-KGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMSN-EEVLEYLKKG-YRL------PK-  225 (258)
T ss_pred             cccccc-ccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCCH-HHHHHHHhcC-CCC------CC-
Confidence            322111 12337889999999988889999999999999999998 7888864322 2221111111 100      00 


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML  829 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L  829 (833)
                           ....+.++.+++.+|+..||++|||+.|+++.|
T Consensus       226 -----~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~l  258 (258)
T smart00219      226 -----PENCPPEIYKLMLQCWAEDPEDRPTFSELVEIL  258 (258)
T ss_pred             -----CCcCCHHHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence                 011345788899999999999999999998864

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=100.00  E-value=6.8e-37  Score=323.43  Aligned_cols=248  Identities=20%  Similarity=0.218  Sum_probs=195.2

Q ss_pred             cccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCCCCC
Q 003296          563 ELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGT  641 (833)
Q Consensus       563 ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~g~  641 (833)
                      ||+|+||+||+|.. .+|+.||+|.+... ........+.|.+|++++++++||||+++++++...+..|+||||+++|+
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKK-RLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGD   79 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehh-hhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCc
Confidence            68999999999986 47899999998422 22222345677899999999999999999999999999999999999999


Q ss_pred             hhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCcccc
Q 003296          642 LFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST  721 (833)
Q Consensus       642 L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~  721 (833)
                      |.+++.......+++.++..++.|++.|+.|||   ..+++||||||+||++++++.+|++|||++.......   ....
T Consensus        80 L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH---~~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~---~~~~  153 (277)
T cd05577          80 LKYHIYNVGEPGFPEARAIFYAAQIICGLEHLH---QRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGK---KIKG  153 (277)
T ss_pred             HHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEEccCcchhhhccCC---cccc
Confidence            999998654457899999999999999999999   7899999999999999999999999999987654321   1234


Q ss_pred             ccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHH
Q 003296          722 VAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQM  801 (833)
Q Consensus       722 ~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  801 (833)
                      ..|+..|+|||+..+..++.++|||||||++|||++|+.||..............   .....  ....      .....
T Consensus       154 ~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~---~~~~~--~~~~------~~~~~  222 (277)
T cd05577         154 RAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELKR---RTLEM--AVEY------PDKFS  222 (277)
T ss_pred             ccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCcccccHHHHHh---ccccc--cccC------CccCC
Confidence            5688899999999888899999999999999999999999975432111000000   00000  0000      11224


Q ss_pred             HHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296          802 LTVLKVAVACVSVSPEARP-----KMKSVLRM  828 (833)
Q Consensus       802 ~~~~~l~~~cl~~dP~~Rp-----s~~evl~~  828 (833)
                      ..+.+++.+||+.||++||     ++.+++.|
T Consensus       223 ~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~h  254 (277)
T cd05577         223 PEAKDLCEALLQKDPEKRLGCRGGSADEVREH  254 (277)
T ss_pred             HHHHHHHHHHccCChhHccCCCcccHHHHHhC
Confidence            5678999999999999999     66667653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=100.00  E-value=5.1e-37  Score=326.48  Aligned_cols=255  Identities=19%  Similarity=0.212  Sum_probs=195.8

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCCceEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~~~~lv  633 (833)
                      +|...+.||+|+||.||++... +|+.||||++.....   ......+.+|+.++.++. |||||++++++..++..++|
T Consensus         5 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~---~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~   81 (288)
T cd06616           5 DLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVD---EKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWIC   81 (288)
T ss_pred             HhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccC---hHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEE
Confidence            4556678999999999999974 789999999842211   123567899999999996 99999999999999999999


Q ss_pred             EeeCCCCChhhh---hhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          634 YEYAPKGTLFDV---LHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       634 ~ey~~~g~L~~~---l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      |||++. ++.++   +.......+++..+..++.|++.||+|||+  ..+|+||||||+||+++.++.+|++|||+++..
T Consensus        82 ~e~~~~-~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~--~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~  158 (288)
T cd06616          82 MELMDI-SLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKE--ELKIIHRDVKPSNILLDRNGNIKLCDFGISGQL  158 (288)
T ss_pred             EecccC-CHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhh--cCCeeccCCCHHHEEEccCCcEEEeecchhHHh
Confidence            999864 55443   332223568999999999999999999994  358999999999999999999999999998765


Q ss_pred             CCCCCCCccccccccccccccccccCC---cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc
Q 003296          711 DPSKSTGSLSTVAGSVGYIPPEYAYTM---RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~---~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (833)
                      .....   .....|++.|+|||++.+.   .++.++|||||||++|||++|+.||................ .      .
T Consensus       159 ~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~-~------~  228 (288)
T cd06616         159 VDSIA---KTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWNSVFDQLTQVVKG-D------P  228 (288)
T ss_pred             ccCCc---cccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcchHHHHHhhhcCC-C------C
Confidence            32221   1334689999999998765   68999999999999999999999997544222221111111 0      0


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      +.....  .....+.++.+++.+||+.||++|||++||+++
T Consensus       229 ~~~~~~--~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~~  267 (288)
T cd06616         229 PILSNS--EEREFSPSFVNFINLCLIKDESKRPKYKELLEH  267 (288)
T ss_pred             CcCCCc--CCCccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            011100  011345578899999999999999999999875

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=100.00  E-value=2.2e-36  Score=325.87  Aligned_cols=250  Identities=21%  Similarity=0.292  Sum_probs=198.3

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +.|+..+.||+|+||.||+|+. .+|..||+|++..... ......+.+.+|++++++++|||+|+++++|..++..++|
T Consensus        25 ~~f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  103 (317)
T cd06635          25 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGK-QSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLV  103 (317)
T ss_pred             hhhhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCC-CchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEE
Confidence            3466778999999999999996 4789999999843211 1122345789999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||++ |++.+.+... ...++|.++..++.|++.|+.|||   ..+|+||||||+||+++.++.+|++|||++......
T Consensus       104 ~e~~~-g~l~~~~~~~-~~~l~~~~~~~i~~~i~~~l~~lH---~~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~  178 (317)
T cd06635         104 MEYCL-GSASDLLEVH-KKPLQEVEIAAITHGALQGLAYLH---SHNMIHRDIKAGNILLTEPGQVKLADFGSASIASPA  178 (317)
T ss_pred             EeCCC-CCHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcccEEECCCCCEEEecCCCccccCCc
Confidence            99997 5888877643 346899999999999999999999   789999999999999999999999999998754321


Q ss_pred             CCCCcccccccccccccccccc---CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAY---TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                            ....|++.|+|||++.   .+.++.++|||||||++|||++|+.||............. .. ..         
T Consensus       179 ------~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~-~~-~~---------  241 (317)
T cd06635         179 ------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIA-QN-ES---------  241 (317)
T ss_pred             ------ccccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHH-hc-cC---------
Confidence                  2456899999999874   4568899999999999999999999997543322221111 11 00         


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML  829 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L  829 (833)
                      ...  ........+.+++.+||+.+|++||++.||+++.
T Consensus       242 ~~~--~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~  278 (317)
T cd06635         242 PTL--QSNEWSDYFRNFVDSCLQKIPQDRPTSEELLKHM  278 (317)
T ss_pred             CCC--CCccccHHHHHHHHHHccCCcccCcCHHHHHhCh
Confidence            000  0112344678999999999999999999999874

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-37  Score=324.73  Aligned_cols=252  Identities=19%  Similarity=0.309  Sum_probs=202.4

Q ss_pred             CCccccccCcccEEEEEEcC---CC--ceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          558 NPLNVELKTRFSTYYKAVMP---SG--MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       558 ~~~~~ig~g~~g~vy~~~~~---~~--~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      ...+.||.|.||.||+|+..   .|  -.||||.-+....   ....+.|.+|.-+|++++|||||+++|.|.+ ...|+
T Consensus       392 tl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t---~d~tekflqEa~iMrnfdHphIikLIGv~~e-~P~Wi  467 (974)
T KOG4257|consen  392 TLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCT---PDDTEKFLQEASIMRNFDHPHIIKLIGVCVE-QPMWI  467 (974)
T ss_pred             cHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCC---hhhHHHHHHHHHHHHhCCCcchhheeeeeec-cceeE
Confidence            45679999999999999952   34  3578887743222   2346889999999999999999999999975 56799


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      |||.++-|.|.++|+.. +..++......++.|++.||+|||   +.++|||||...|||+.+..-+|++|||+++.+..
T Consensus       468 vmEL~~~GELr~yLq~n-k~sL~l~tL~ly~~Qi~talaYLe---SkrfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed  543 (974)
T KOG4257|consen  468 VMELAPLGELREYLQQN-KDSLPLRTLTLYCYQICTALAYLE---SKRFVHRDIAARNILVSSPQCVKLADFGLSRYLED  543 (974)
T ss_pred             EEecccchhHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHH---hhchhhhhhhhhheeecCcceeeecccchhhhccc
Confidence            99999999999999864 456888899999999999999999   88999999999999999999999999999998876


Q ss_pred             CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      ...... +...-...|||||.+.-.+++.++|||-|||.+||+++ |.+||.+-..           .+.+..+-.. -+
T Consensus       544 ~~yYka-S~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkN-----------sDVI~~iEnG-eR  610 (974)
T KOG4257|consen  544 DAYYKA-SRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKN-----------SDVIGHIENG-ER  610 (974)
T ss_pred             cchhhc-cccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccccccc-----------cceEEEecCC-CC
Confidence            544332 23334568999999999999999999999999999976 9999974221           1222221111 11


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                        .+.++.+++.+..++.+||+.||.+||.+.|+...|.++
T Consensus       611 --lP~P~nCPp~LYslmskcWayeP~kRPrftei~~~lsdv  649 (974)
T KOG4257|consen  611 --LPCPPNCPPALYSLMSKCWAYEPSKRPRFTEIKAILSDV  649 (974)
T ss_pred             --CCCCCCCChHHHHHHHHHhccCcccCCcHHHHHHHHHHH
Confidence              112235667788999999999999999999999888765

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-36  Score=321.39  Aligned_cols=249  Identities=16%  Similarity=0.277  Sum_probs=199.7

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC---CCCcccceEEEecCCceE
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS---NSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~---H~niv~~~~~~~~~~~~~  631 (833)
                      .|+..+.||+|+||.||+|.. .+|..||||.+....   .....+++.+|++++++++   |||+++++++|...+..+
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~---~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~   78 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDT---PDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLW   78 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCC---CchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEE
Confidence            466778999999999999996 578999999984221   1223467889999999997   999999999999999999


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      +||||+++++|.++++.   ..++|.....++.|+++||.|||   ..+|+||||+|+||+++.++.++++|||++....
T Consensus        79 lv~e~~~~~~L~~~~~~---~~l~~~~~~~i~~~i~~~l~~lh---~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~  152 (277)
T cd06917          79 IIMEYAEGGSVRTLMKA---GPIAEKYISVIIREVLVALKYIH---KVGVIHRDIKAANILVTNTGNVKLCDFGVAALLN  152 (277)
T ss_pred             EEEecCCCCcHHHHHHc---cCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcCHHHEEEcCCCCEEEccCCceeecC
Confidence            99999999999999874   36899999999999999999999   7899999999999999999999999999998765


Q ss_pred             CCCCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                      ....  ......|+..|+|||++.++ .++.++|||||||++|||++|+.||.+.... .+..... .      ...+.+
T Consensus       153 ~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~-~~~~~~~-~------~~~~~~  222 (277)
T cd06917         153 QNSS--KRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAF-RAMMLIP-K------SKPPRL  222 (277)
T ss_pred             CCcc--ccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCChh-hhhhccc-c------CCCCCC
Confidence            4332  12345799999999988654 4789999999999999999999999754321 1111100 0      000111


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ..     ...+.++.+++.+||+.||++||++.|++++
T Consensus       223 ~~-----~~~~~~~~~~i~~~l~~~p~~R~~~~~il~~  255 (277)
T cd06917         223 ED-----NGYSKLLREFVAACLDEEPKERLSAEELLKS  255 (277)
T ss_pred             Cc-----ccCCHHHHHHHHHHcCCCcccCcCHHHHhhC
Confidence            10     1134578899999999999999999999874

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=100.00  E-value=7.4e-37  Score=332.41  Aligned_cols=265  Identities=19%  Similarity=0.286  Sum_probs=199.0

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC----
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD----  628 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~----  628 (833)
                      +++|+..+.||+|+||.||+|+. .+|+.||||++....   .......+.+|++++++++|||||++++++....    
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~   80 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFE---HQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESF   80 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccc---cchhHHHHHHHHHHHHhCCCCCcCchhheeeccccccc
Confidence            45788889999999999999986 579999999984211   1223467889999999999999999999876543    


Q ss_pred             -ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          629 -SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       629 -~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                       ..|+||||+++ +|.+++..   ..+++..+..++.|+++||+|||   +.+|+||||||+||+++.++.+|++|||++
T Consensus        81 ~~~~lv~e~~~~-~l~~~~~~---~~l~~~~~~~i~~ql~~aL~~LH---~~~ivH~dlkp~Nill~~~~~~kl~dfg~~  153 (336)
T cd07849          81 NDVYIVQELMET-DLYKLIKT---QHLSNDHIQYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTNCDLKICDFGLA  153 (336)
T ss_pred             ceEEEEehhccc-CHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEECCCCCEEECcccce
Confidence             47999999974 88888764   46899999999999999999999   789999999999999999999999999999


Q ss_pred             eeeCCCCCC-CccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHH--hhcc--ccc
Q 003296          708 KVIDPSKST-GSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLR--NSAQ--QDK  781 (833)
Q Consensus       708 ~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~--~~~~--~~~  781 (833)
                      +........ .......||+.|||||++.+ ..++.++||||+||++|||++|+.||.+......+...  ....  .+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~~~~~~~~~~~~~~~~~~~  233 (336)
T cd07849         154 RIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLHQLNLILGVLGTPSQED  233 (336)
T ss_pred             eeccccccccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHH
Confidence            876432211 11234578999999998754 46889999999999999999999999754432222111  0000  000


Q ss_pred             ccccccccc---------cCC-c--hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          782 LDHILDFNV---------SRT-S--LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       782 ~~~~~~~~~---------~~~-~--~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ...+.+...         ... .  ........++.+++.+||+.||++|||+.|++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~h  292 (336)
T cd07849         234 LNCIISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALAH  292 (336)
T ss_pred             HHHhhchhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            111110000         000 0  0011234578899999999999999999999886

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=100.00  E-value=1.1e-36  Score=324.90  Aligned_cols=265  Identities=15%  Similarity=0.187  Sum_probs=198.6

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|+..+.||+|+||.||+|... +|+.||+|++....  ......+.+.+|++++++++||||+++++++...+..|+||
T Consensus         3 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   80 (294)
T PLN00009          3 QYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQ--EDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVF   80 (294)
T ss_pred             ceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhcc--ccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEE
Confidence            5777889999999999999975 78999999984221  11233467889999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC-CCCceeccceeeeeeCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS-LKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~-~~~~ki~dfgl~~~~~~~  713 (833)
                      ||++ ++|.+++........++.....++.|++.||+|||   ..+|+||||||+||+++. ++.+|++|||++......
T Consensus        81 e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~  156 (294)
T PLN00009         81 EYLD-LDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCH---SHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIP  156 (294)
T ss_pred             eccc-ccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCcceEEEECCCCEEEEcccccccccCCC
Confidence            9996 58888886544445688888899999999999999   789999999999999985 457899999999765322


Q ss_pred             CCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc-----
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD-----  787 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----  787 (833)
                      ..  ......|++.|+|||++.+. .++.++||||+||++|||+||+.||........................+     
T Consensus       157 ~~--~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (294)
T PLN00009        157 VR--TFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRILGTPNEETWPGVTSL  234 (294)
T ss_pred             cc--ccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccccccc
Confidence            11  12345678999999988654 57899999999999999999999997554433322211100000000000     


Q ss_pred             -------ccccCCc--hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          788 -------FNVSRTS--LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       788 -------~~~~~~~--~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                             +......  ........++.+++.+|++.+|++||++.|++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~~  284 (294)
T PLN00009        235 PDYKSAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAALEH  284 (294)
T ss_pred             hhhhhhcccCCCCCHHHhCcCCChHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                   0000000  0011234567899999999999999999999874

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=100.00  E-value=2.3e-36  Score=317.06  Aligned_cols=254  Identities=22%  Similarity=0.319  Sum_probs=201.8

Q ss_pred             cCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      |...+.||+|+||.||+|... +++.||+|.++....  .....+.+.+|++++++++||||+++++++...+..++|+|
T Consensus         2 y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e   79 (264)
T cd06626           2 WQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDN--DPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFME   79 (264)
T ss_pred             ceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECccc--chHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEe
Confidence            567789999999999999964 789999999853221  12345789999999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      |+++++|.+++..  ...+++..+..++.|++.|++|||   +.+|+||||||+||++++++.+|++|||++........
T Consensus        80 ~~~~~~L~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lh---~~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~  154 (264)
T cd06626          80 YCSGGTLEELLEH--GRILDEHVIRVYTLQLLEGLAYLH---SHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTT  154 (264)
T ss_pred             cCCCCcHHHHHhh--cCCCChHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEcccccccccCCCCC
Confidence            9999999999986  345789999999999999999999   78899999999999999999999999999887643322


Q ss_pred             CCc--cccccccccccccccccCCc---ccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296          716 TGS--LSTVAGSVGYIPPEYAYTMR---VTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       716 ~~~--~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                      ...  .....|++.|+|||++.+..   ++.++|||||||++||+++|+.||................  .     .+..
T Consensus       155 ~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~~~~~~~~~~~--~-----~~~~  227 (264)
T cd06626         155 TMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDNEFQIMFHVGAG--H-----KPPI  227 (264)
T ss_pred             cccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCcchHHHHHHHhcC--C-----CCCC
Confidence            110  12356889999999988766   8899999999999999999999997543322222111110  0     0011


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      +.    .......+.+++.+||+.+|++|||+.|++.+
T Consensus       228 ~~----~~~~~~~~~~li~~~l~~~p~~R~~~~~i~~~  261 (264)
T cd06626         228 PD----SLQLSPEGKDFLDRCLESDPKKRPTASELLQH  261 (264)
T ss_pred             Cc----ccccCHHHHHHHHHHccCCcccCCCHHHHhcC
Confidence            10    11224567789999999999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=100.00  E-value=2.5e-36  Score=320.12  Aligned_cols=260  Identities=19%  Similarity=0.235  Sum_probs=195.2

Q ss_pred             cCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecC--CceEE
Q 003296          557 ANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLAS--DSAYL  632 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~--~~~~l  632 (833)
                      |+..+.+|+|+||.||+|+. .+++.||+|+++....   ........+|+.+++++. ||||+++++++.++  +..++
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~---~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~l   77 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFK---SLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLAL   77 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccC---CchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEE
Confidence            45678899999999999996 4789999999843211   122334568999999996 99999999999987  88999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||||++ |++.+.+... ...++|.++..++.|++.||+|||   ..+|+||||||+||+++. +.+|++|||+++....
T Consensus        78 v~e~~~-~~l~~~l~~~-~~~~~~~~~~~~~~qi~~~L~~LH---~~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~  151 (282)
T cd07831          78 VFELMD-MNLYELIKGR-KRPLPEKRVKSYMYQLLKSLDHMH---RNGIFHRDIKPENILIKD-DILKLADFGSCRGIYS  151 (282)
T ss_pred             EEecCC-ccHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCceecccCHHHEEEcC-CCeEEEeccccccccc
Confidence            999997 5888888753 246899999999999999999999   788999999999999999 9999999999987643


Q ss_pred             CCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHH--HHHHhhccccc-------c
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAK--WVLRNSAQQDK-------L  782 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~--~~~~~~~~~~~-------~  782 (833)
                      ...   .....++..|+|||++.. ..++.++|||||||++|||++|+.||.+......  +..........       .
T Consensus       152 ~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (282)
T cd07831         152 KPP---YTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRK  228 (282)
T ss_pred             CCC---cCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHcCCCCHHHHHhhcc
Confidence            321   133568999999997654 4578999999999999999999999975543221  11111100000       0


Q ss_pred             cccccccccCC-----chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          783 DHILDFNVSRT-----SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       783 ~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ....+......     .......+.++.+++.+||+++|++||+++|++++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~  279 (282)
T cd07831         229 SRHMNYNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALRH  279 (282)
T ss_pred             cccccccCcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhhC
Confidence            00000000000     00011345788999999999999999999999875

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=100.00  E-value=1.2e-36  Score=318.19  Aligned_cols=249  Identities=18%  Similarity=0.199  Sum_probs=201.9

Q ss_pred             cCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      |...+.||.|+||.||+|... +|+.||+|.+.. .........+.+.+|++++++++||||+++++++..++..++|||
T Consensus         2 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~-~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (258)
T cd05578           2 FELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNK-QKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVD   80 (258)
T ss_pred             ceEEEEeccCCCceEEEEEEccCCcEEEEEEEeh-hhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEe
Confidence            667789999999999999975 699999999942 222222345789999999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      |+++++|.+++...  ..+++.++..++.|+++||.|||   ..+++|+||||+||++++++.++++|||++....... 
T Consensus        81 ~~~~~~L~~~l~~~--~~l~~~~~~~~~~~i~~~l~~lh---~~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~-  154 (258)
T cd05578          81 LLLGGDLRYHLSQK--VKFSEEQVKFWICEIVLALEYLH---SKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDT-  154 (258)
T ss_pred             CCCCCCHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeEEcCCCCEEEeecccccccCCCc-
Confidence            99999999999763  46899999999999999999999   7889999999999999999999999999987654332 


Q ss_pred             CCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccH-HHHHHHhhcccccccccccccccCCc
Q 003296          716 TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNEL-AKWVLRNSAQQDKLDHILDFNVSRTS  794 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (833)
                        ......|+..|+|||++.+..++.++|||||||++|+|++|+.||...... ..+.......   ...    ..    
T Consensus       155 --~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~---~~~----~~----  221 (258)
T cd05578         155 --LTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRAKQET---ADV----LY----  221 (258)
T ss_pred             --cccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCccHHHHHHHHhcc---ccc----cC----
Confidence              123457889999999998888999999999999999999999999854431 1111111110   000    00    


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCCCCCH--HHHHH
Q 003296          795 LAVRSQMLTVLKVAVACVSVSPEARPKM--KSVLR  827 (833)
Q Consensus       795 ~~~~~~~~~~~~l~~~cl~~dP~~Rps~--~evl~  827 (833)
                        ....+..+.+++.+||+.||.+||++  +|+++
T Consensus       222 --~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~l~~  254 (258)
T cd05578         222 --PATWSTEAIDAINKLLERDPQKRLGDNLKDLKN  254 (258)
T ss_pred             --cccCcHHHHHHHHHHccCChhHcCCccHHHHhc
Confidence              11223577899999999999999999  77664

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=100.00  E-value=2.4e-36  Score=320.87  Aligned_cols=253  Identities=19%  Similarity=0.279  Sum_probs=204.5

Q ss_pred             HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~  631 (833)
                      .++.|+..+.+|+|+||.||+|..+ ++..||+|++.....     ..+.+.+|++++++++||||+++++++..++..|
T Consensus        17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   91 (286)
T cd06614          17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-----NKELIINEILIMKDCKHPNIVDYYDSYLVGDELW   91 (286)
T ss_pred             ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-----hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEE
Confidence            3455677789999999999999986 789999999942221     3567899999999999999999999999999999


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      +|+||+++++|.+++.... ..+++..+..++.|++.||+|||   ..+|+|+|+||+||+++.++.+||+|||++....
T Consensus        92 lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~lH---~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~  167 (286)
T cd06614          92 VVMEYMDGGSLTDIITQNF-VRMNEPQIAYVCREVLQGLEYLH---SQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLT  167 (286)
T ss_pred             EEEeccCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCChhhEEEcCCCCEEECccchhhhhc
Confidence            9999999999999998642 36999999999999999999999   7899999999999999999999999999987554


Q ss_pred             CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      ....  ......|+..|+|||++.+..++.++|||||||++|||++|+.||............. ..  .....      
T Consensus       168 ~~~~--~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~~~~~~~~-~~--~~~~~------  236 (286)
T cd06614         168 KEKS--KRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLRALFLIT-TK--GIPPL------  236 (286)
T ss_pred             cchh--hhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-hc--CCCCC------
Confidence            3221  1134568899999999988889999999999999999999999997544332211111 10  00000      


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                         .........+.+++.+|++.+|.+||++.||+.+
T Consensus       237 ---~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~  270 (286)
T cd06614         237 ---KNPEKWSPEFKDFLNKCLVKDPEKRPSAEELLQH  270 (286)
T ss_pred             ---cchhhCCHHHHHHHHHHhccChhhCcCHHHHhhC
Confidence               0111234567899999999999999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.9e-36  Score=304.86  Aligned_cols=263  Identities=20%  Similarity=0.248  Sum_probs=198.0

Q ss_pred             HHHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhc--CCCCCcccceEEEecC---
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGK--LSNSNVMTPLAYVLAS---  627 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~--l~H~niv~~~~~~~~~---  627 (833)
                      ....-...+.||+|+||.|++|.+ .|..||||++..       .+++.+.+|.+|.+.  +||+||..+++.-..+   
T Consensus       209 iarqI~L~e~IGkGRyGEVwrG~w-rGe~VAVKiF~s-------rdE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs  280 (513)
T KOG2052|consen  209 IARQIVLQEIIGKGRFGEVWRGRW-RGEDVAVKIFSS-------RDERSWFRETEIYQTVMLRHENILGFIAADNKDNGS  280 (513)
T ss_pred             hhheeEEEEEecCccccceeeccc-cCCceEEEEecc-------cchhhhhhHHHHHHHHHhccchhhhhhhccccCCCc
Confidence            334455678999999999999998 689999999942       235678899998876  5999999999876543   


Q ss_pred             -CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhc-----CCCCCeeecCCCccceeeCCCCCcee
Q 003296          628 -DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHG-----FTSNPILLLDLSTRNIFLKSLKEPQI  701 (833)
Q Consensus       628 -~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~-----~~~~~iiHrdlk~~Nill~~~~~~ki  701 (833)
                       .++|||.||-+.|||+|+|..   ..++-...++++..+|.||+|||.     ..++.|.|||||+.|||+.+++.+.|
T Consensus       281 ~TQLwLvTdYHe~GSL~DyL~r---~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~I  357 (513)
T KOG2052|consen  281 WTQLWLVTDYHEHGSLYDYLNR---NTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCI  357 (513)
T ss_pred             eEEEEEeeecccCCcHHHHHhh---ccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEE
Confidence             258999999999999999985   568999999999999999999993     35678999999999999999999999


Q ss_pred             ccceeeeeeCCCCCC--CccccccccccccccccccCCc----cc--ccCcchhhHHHHHHHHhC----------CCccc
Q 003296          702 GDIELCKVIDPSKST--GSLSTVAGSVGYIPPEYAYTMR----VT--MAGNVYSFGVILLELLTG----------KTAVN  763 (833)
Q Consensus       702 ~dfgl~~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~----~~--~~~Dv~S~Gvvl~elltg----------~~p~~  763 (833)
                      +|+|+|.........  ......+||.+|||||++....    +.  ..+||||||.|+||+.-+          +.||.
T Consensus       358 ADLGLAv~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyy  437 (513)
T KOG2052|consen  358 ADLGLAVRHDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYY  437 (513)
T ss_pred             eeceeeEEecccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcc
Confidence            999999876543221  1224578999999999986431    22  459999999999999753          45766


Q ss_pred             CCccH---HHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          764 QGNEL---AKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       764 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      +-.+.   .+.+.... ..++++..++..     ....+.+..+.+++..||..+|+.|-|+--|-+.|.++
T Consensus       438 d~Vp~DPs~eeMrkVV-Cv~~~RP~ipnr-----W~s~~~l~~m~klMkeCW~~Np~aRltALriKKtl~~l  503 (513)
T KOG2052|consen  438 DVVPSDPSFEEMRKVV-CVQKLRPNIPNR-----WKSDPALRVMAKLMKECWYANPAARLTALRIKKTLAKL  503 (513)
T ss_pred             cCCCCCCCHHHHhcce-eecccCCCCCcc-----cccCHHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHH
Confidence            32211   11111111 111111111111     12235677889999999999999999998888777653

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=100.00  E-value=2.3e-36  Score=316.97  Aligned_cols=251  Identities=21%  Similarity=0.287  Sum_probs=205.2

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|+..+.||+|++|.||+|+.. +|+.||||++......   ...+.|.+|++++++++||||+++++++...+..++||
T Consensus         2 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   78 (264)
T cd06623           2 DLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDE---EFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVL   78 (264)
T ss_pred             cceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcch---HHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEE
Confidence            5777899999999999999986 6999999998532211   33578999999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCC-CCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTS-NPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~-~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||+++++|.+++...  ..+++..+..++.|+++|++|||   . .+++||||+|+||+++.++.++++|||++......
T Consensus        79 e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~l~~~l~~lh---~~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~  153 (264)
T cd06623          79 EYMDGGSLADLLKKV--GKIPEPVLAYIARQILKGLDYLH---TKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENT  153 (264)
T ss_pred             EecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHh---ccCCCccCCCCHHHEEECCCCCEEEccCccceecccC
Confidence            999999999999763  56899999999999999999999   7 89999999999999999999999999999876433


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCc--cHHHHHHHhhccccccccccccccc
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGN--ELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      ...  .....|+..|+|||+..+..++.++||||||+++|||+||+.||....  ...+........  ..     +...
T Consensus       154 ~~~--~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~--~~-----~~~~  224 (264)
T cd06623         154 LDQ--CNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPSFFELMQAICDG--PP-----PSLP  224 (264)
T ss_pred             CCc--ccceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccccCHHHHHHHHhcC--CC-----CCCC
Confidence            321  134568999999999988889999999999999999999999997554  222211111100  00     0010


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .     ...+..+.+++.+|++.+|++||++.|++++
T Consensus       225 ~-----~~~~~~l~~li~~~l~~~p~~R~~~~~ll~~  256 (264)
T cd06623         225 A-----EEFSPEFRDFISACLQKDPKKRPSAAELLQH  256 (264)
T ss_pred             c-----ccCCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence            0     0134578899999999999999999999875

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.7e-38  Score=351.89  Aligned_cols=256  Identities=18%  Similarity=0.182  Sum_probs=206.5

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      .++|++.++||+|+||.|..+++ .+++.||+|+++ +...........|+.|-.+|.--+.+.||.++-+|+++.++|+
T Consensus        74 ~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~ln-K~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~~~LYl  152 (1317)
T KOG0612|consen   74 AEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILN-KWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDERYLYL  152 (1317)
T ss_pred             HHhhHHHHHhcccccceeEEEEeeccccchhHHHhh-HHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCccceEE
Confidence            46788899999999999999997 479999999994 3333334456789999999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      |||||+||||..++.+..  .+++.-+..|+..|+-||.-+|   +.|+|||||||+|||||..|++|++|||.|-.+..
T Consensus       153 VMdY~pGGDlltLlSk~~--~~pE~~ArFY~aEiVlAldslH---~mgyVHRDiKPDNvLld~~GHikLADFGsClkm~~  227 (1317)
T KOG0612|consen  153 VMDYMPGGDLLTLLSKFD--RLPEDWARFYTAEIVLALDSLH---SMGYVHRDIKPDNVLLDKSGHIKLADFGSCLKMDA  227 (1317)
T ss_pred             EEecccCchHHHHHhhcC--CChHHHHHHHHHHHHHHHHHHH---hccceeccCCcceeEecccCcEeeccchhHHhcCC
Confidence            999999999999998743  6888888889999999999999   89999999999999999999999999999987764


Q ss_pred             CCCCCcccccccccccccccccc----C-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAY----T-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~----~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (833)
                      ... ......+|||.|.+||++.    + +.|+..+|+||+||++|||+.|..||+...-...+-           .+++
T Consensus       228 dG~-V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYadslveTY~-----------KIm~  295 (1317)
T KOG0612|consen  228 DGT-VRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYADSLVETYG-----------KIMN  295 (1317)
T ss_pred             CCc-EEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHHHHHHHHH-----------HHhc
Confidence            442 2446789999999999875    3 569999999999999999999999998543322221           1222


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCC---HHHHHHH
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPK---MKSVLRM  828 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps---~~evl~~  828 (833)
                      ..-.-..+.....+.++.++|.+.+. +|+.|..   ++|+-.|
T Consensus       296 hk~~l~FP~~~~VSeeakdLI~~ll~-~~e~RLgrngiedik~H  338 (1317)
T KOG0612|consen  296 HKESLSFPDETDVSEEAKDLIEALLC-DREVRLGRNGIEDIKNH  338 (1317)
T ss_pred             hhhhcCCCcccccCHHHHHHHHHHhc-ChhhhcccccHHHHHhC
Confidence            11111111222466778888887665 7888887   8887654

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=100.00  E-value=2.5e-36  Score=324.53  Aligned_cols=265  Identities=20%  Similarity=0.246  Sum_probs=199.0

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC--CceE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS--DSAY  631 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~--~~~~  631 (833)
                      ++|+..+.||+|+||.||+|.. .+|+.||+|+++...  ........+.+|++++++++||||+++++++...  +..+
T Consensus         7 ~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (309)
T cd07845           7 TEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDN--ERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIF   84 (309)
T ss_pred             cceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEecc--CCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEE
Confidence            4688889999999999999997 479999999984221  1122234567899999999999999999999765  5689


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      +||||+++ +|.+++... ...++|.++..++.|+++||+|||   ..+++||||||+||++++++.+|++|||+++...
T Consensus        85 lv~e~~~~-~l~~~l~~~-~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~  159 (309)
T cd07845          85 LVMEYCEQ-DLASLLDNM-PTPFSESQVKCLMLQLLRGLQYLH---ENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYG  159 (309)
T ss_pred             EEEecCCC-CHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEECccceeeecC
Confidence            99999974 898888753 246899999999999999999999   7889999999999999999999999999998765


Q ss_pred             CCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc----
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL----  786 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~----  786 (833)
                      ....  ......+++.|+|||++.+ ..++.++||||+||++|||++|+.||................+.......    
T Consensus       160 ~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
T cd07845         160 LPAK--PMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEIEQLDLIIQLLGTPNESIWPGFS  237 (309)
T ss_pred             CccC--CCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChhhchhhh
Confidence            3321  1233456889999998865 45789999999999999999999999755443322111110000000000    


Q ss_pred             ------cccccCCc-----hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          787 ------DFNVSRTS-----LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       787 ------~~~~~~~~-----~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                            ........     ........++.+++.+|++.||++|||++|++.|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~h  290 (309)
T cd07845         238 DLPLVGKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAEEALES  290 (309)
T ss_pred             cccccccccccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence                  00000000     0001124567899999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=100.00  E-value=2e-36  Score=322.67  Aligned_cols=265  Identities=20%  Similarity=0.226  Sum_probs=199.5

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC--CceE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS--DSAY  631 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~--~~~~  631 (833)
                      ++|+..+.||+|+||.||+|... +++.||+|+++....  .......+.+|++++++++||||+++++++...  +..|
T Consensus         5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~   82 (293)
T cd07843           5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKE--KEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIY   82 (293)
T ss_pred             hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccc--cccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEE
Confidence            46778899999999999999975 689999999953321  122345678999999999999999999999877  8899


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      +||||++ ++|.+++.... ..+++..+..++.|++.||+|||   ..+++||||||+||+++.++.+|++|||+++...
T Consensus        83 lv~e~~~-~~L~~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH---~~~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~  157 (293)
T cd07843          83 MVMEYVE-HDLKSLMETMK-QPFLQSEVKCLMLQLLSGVAHLH---DNWILHRDLKTSNLLLNNRGILKICDFGLAREYG  157 (293)
T ss_pred             EEehhcC-cCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHHHEEECCCCcEEEeecCceeecc
Confidence            9999997 59999887532 36899999999999999999999   7889999999999999999999999999998765


Q ss_pred             CCCCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc----------
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD----------  780 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~----------  780 (833)
                      ....  ......+++.|+|||++.+. .++.++||||+||++|||++|+.||..................          
T Consensus       158 ~~~~--~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (293)
T cd07843         158 SPLK--PYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTPTEKIWPGFS  235 (293)
T ss_pred             CCcc--ccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchHHHHHhh
Confidence            3321  12345678999999988754 4689999999999999999999999754432211110000000          


Q ss_pred             cccccc-----cccccCCchhHHH--HHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          781 KLDHIL-----DFNVSRTSLAVRS--QMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       781 ~~~~~~-----~~~~~~~~~~~~~--~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .+....     .............  ....+.+++.+||+.||++|||+.|++.+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~t~~ell~~  290 (293)
T cd07843         236 ELPGAKKKTFTKYPYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRISAEDALKH  290 (293)
T ss_pred             ccchhcccccccccchhhhccccccCCChHHHHHHHHHhccCccccCCHHHHhcC
Confidence            000000     0000000000001  24567899999999999999999999864

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=100.00  E-value=1.7e-36  Score=331.75  Aligned_cols=263  Identities=18%  Similarity=0.180  Sum_probs=201.0

Q ss_pred             HHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC----
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS----  627 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~----  627 (833)
                      ..+.|+..+.||+|+||.||+|.. .+|+.||||++....  ......+.+.+|++++++++||||++++++|...    
T Consensus        14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   91 (353)
T cd07850          14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPF--QNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLE   91 (353)
T ss_pred             hhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccc--cChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcc
Confidence            456788899999999999999997 489999999984221  1122345688999999999999999999998754    


Q ss_pred             --CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccce
Q 003296          628 --DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIE  705 (833)
Q Consensus       628 --~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfg  705 (833)
                        ...|+||||++ |+|.+.+..    .+++.++..++.|++.||+|||   ..+|+||||||+||+++.++.+|++|||
T Consensus        92 ~~~~~~lv~e~~~-~~l~~~~~~----~l~~~~~~~~~~ql~~aL~~LH---~~gi~H~dlkp~Nil~~~~~~~kL~Dfg  163 (353)
T cd07850          92 EFQDVYLVMELMD-ANLCQVIQM----DLDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFG  163 (353)
T ss_pred             ccCcEEEEEeccC-CCHHHHHhh----cCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEccCc
Confidence              34799999996 588888864    2889999999999999999999   7899999999999999999999999999


Q ss_pred             eeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccc---
Q 003296          706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL---  782 (833)
Q Consensus       706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~---  782 (833)
                      +++......   ......||+.|+|||++.+..++.++|||||||++|||++|+.||...+....|.......+...   
T Consensus       164 ~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  240 (353)
T cd07850         164 LARTAGTSF---MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTDHIDQWNKIIEQLGTPSDEF  240 (353)
T ss_pred             cceeCCCCC---CCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCCHHH
Confidence            998764322   12345689999999999988999999999999999999999999976554333322111000000   


Q ss_pred             -----------------------cccccccccCC--chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          783 -----------------------DHILDFNVSRT--SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       783 -----------------------~~~~~~~~~~~--~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                                             ...........  .........++.+++.+|++.||++|||+.|++.+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~~  311 (353)
T cd07850         241 MSRLQPTVRNYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQH  311 (353)
T ss_pred             HHHhhhhhhHHhhcCCCCCCcchhhhCcccccCcccccccccchhHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence                                   00000000000  00011234567899999999999999999999875

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=100.00  E-value=1.5e-36  Score=329.75  Aligned_cols=267  Identities=17%  Similarity=0.211  Sum_probs=201.4

Q ss_pred             HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec----CC
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA----SD  628 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~----~~  628 (833)
                      ..+|+..+.||+|+||.||+|... +|..||+|++....  ......+.+.+|+.++++++|||||++++++..    ..
T Consensus         4 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   81 (334)
T cd07855           4 GSRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAF--DVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFK   81 (334)
T ss_pred             hhceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEecccc--ccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCc
Confidence            467888899999999999999974 79999999985321  122345678899999999999999999998864    34


Q ss_pred             ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeee
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK  708 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~  708 (833)
                      ..++||||+. |+|.+++..  ...+++..+..++.|+++||+|||   ..+|+||||||+||++++++.+|++|||+++
T Consensus        82 ~~~lv~e~~~-~~l~~~~~~--~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~  155 (334)
T cd07855          82 DVYVVMDLME-SDLHHIIHS--DQPLTEEHIRYFLYQLLRGLKYIH---SANVIHRDLKPSNLLVNEDCELRIGDFGMAR  155 (334)
T ss_pred             eEEEEEehhh-hhHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCcEEecccccce
Confidence            6899999995 699999875  345899999999999999999999   7889999999999999999999999999998


Q ss_pred             eeCCCCCC--CccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccc---
Q 003296          709 VIDPSKST--GSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL---  782 (833)
Q Consensus       709 ~~~~~~~~--~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~---  782 (833)
                      ........  .......|+..|+|||++.+ ..++.++|||||||++|||++|+.||.+..............+...   
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g~~~~~~  235 (334)
T cd07855         156 GLSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEEV  235 (334)
T ss_pred             eecccCcCCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCChHHHHHHHHHHhCCChhHh
Confidence            76432211  11234578999999998765 4589999999999999999999999976543322211111000000   


Q ss_pred             ---------cccccccccCCc----hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          783 ---------DHILDFNVSRTS----LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       783 ---------~~~~~~~~~~~~----~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                               ....+.......    ......+.++.+++.+||+.||++||++.|++.+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~  294 (334)
T cd07855         236 LNRIGSDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQH  294 (334)
T ss_pred             hhhhchhhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence                     000000000000    0012235678999999999999999999999875

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=100.00  E-value=1.8e-36  Score=329.62  Aligned_cols=268  Identities=19%  Similarity=0.205  Sum_probs=200.6

Q ss_pred             HHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecC--
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLAS--  627 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~--  627 (833)
                      ...+.|+..+.||+|+||.||+|... +|+.||||++....  ........+.+|+.+++++ +||||++++++|...  
T Consensus         4 ~~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~--~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~   81 (337)
T cd07852           4 HILRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAF--RNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAEND   81 (337)
T ss_pred             hhhhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeecccc--CcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCC
Confidence            34567888899999999999999975 68999999984221  1122345678999999999 999999999998754  


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                      ...|+||||++ ++|.+++...   .++|..+..++.|++.||+|||   ..+|+||||||+||+++.++.+|++|||++
T Consensus        82 ~~~~lv~e~~~-~~L~~~~~~~---~~~~~~~~~i~~qi~~~L~~LH---~~~i~H~dl~p~nill~~~~~~kl~d~g~~  154 (337)
T cd07852          82 KDIYLVFEYME-TDLHAVIRAN---ILEDVHKRYIMYQLLKALKYIH---SGNVIHRDLKPSNILLNSDCRVKLADFGLA  154 (337)
T ss_pred             ceEEEEecccc-cCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCcEEEeeccch
Confidence            35899999997 5999998752   6899999999999999999999   789999999999999999999999999999


Q ss_pred             eeeCCCCCC---CccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc---
Q 003296          708 KVIDPSKST---GSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD---  780 (833)
Q Consensus       708 ~~~~~~~~~---~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~---  780 (833)
                      +........   .......||..|+|||++.+ ..++.++|||||||++|||+||+.||.+................   
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~  234 (337)
T cd07852         155 RSLSELEENPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGPPSA  234 (337)
T ss_pred             hccccccccccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCH
Confidence            876433211   12234678999999998764 45789999999999999999999999754332211110000000   


Q ss_pred             ---------ccccccc----ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          781 ---------KLDHILD----FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       781 ---------~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                               ....+++    ...............++.+++.+||+.||++|||+.|++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~  295 (337)
T cd07852         235 EDIESIKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEEALEH  295 (337)
T ss_pred             HHHHHHHhhhHHHhhhhcccccccchhhhccCCCHHHHHHHHHhccCCcccccCHHHHhhC
Confidence                     0000000    00000000111134578899999999999999999999975

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.9e-37  Score=349.16  Aligned_cols=256  Identities=23%  Similarity=0.311  Sum_probs=194.5

Q ss_pred             HHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC---
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS---  627 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~---  627 (833)
                      +...+|+..+++|+||||.|||++.+ ||+.||||++.-+.   .........+|++++++++|||||+++..|.+.   
T Consensus       476 RY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~---s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~  552 (1351)
T KOG1035|consen  476 RYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKA---SDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAE  552 (1351)
T ss_pred             hHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCch---HHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCc
Confidence            56778888999999999999999976 99999999995332   223346788999999999999999998754320   


Q ss_pred             --------------------------------------------------------------------------------
Q 003296          628 --------------------------------------------------------------------------------  627 (833)
Q Consensus       628 --------------------------------------------------------------------------------  627 (833)
                                                                                                      
T Consensus       553 ~~~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~  632 (1351)
T KOG1035|consen  553 LTVLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSN  632 (1351)
T ss_pred             cccccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCccccccccccccccc
Confidence                                                                                            


Q ss_pred             ------------------------------------CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 003296          628 ------------------------------------DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLA  671 (833)
Q Consensus       628 ------------------------------------~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~  671 (833)
                                                          -.+||=||||+.-.++++++...... .-...++++++|++||+
T Consensus       633 tS~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~~-~~d~~wrLFreIlEGLa  711 (1351)
T KOG1035|consen  633 TSDSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFNS-QRDEAWRLFREILEGLA  711 (1351)
T ss_pred             ccccCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcccch-hhHHHHHHHHHHHHHHH
Confidence                                                01478899999988888887522111 35567889999999999


Q ss_pred             hhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC----------------CCCCCCcccccccccccccccccc
Q 003296          672 FLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID----------------PSKSTGSLSTVAGSVGYIPPEYAY  735 (833)
Q Consensus       672 ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~----------------~~~~~~~~~~~~gt~~y~aPE~~~  735 (833)
                      |+|   +.+||||||||.||++|++..+||+|||+|....                .+......++.+||.-|+|||++.
T Consensus       712 YIH---~~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~  788 (1351)
T KOG1035|consen  712 YIH---DQGIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLS  788 (1351)
T ss_pred             HHH---hCceeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhc
Confidence            999   7889999999999999999999999999998721                011112345689999999999987


Q ss_pred             CC---cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhcc
Q 003296          736 TM---RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACV  812 (833)
Q Consensus       736 ~~---~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl  812 (833)
                      +.   +|+.|+|+||+|||++||+.   ||....+.+..+.. ...         ..++.+...+...+..-..++.+++
T Consensus       789 ~~~~~~Yn~KiDmYSLGIVlFEM~y---PF~TsMERa~iL~~-LR~---------g~iP~~~~f~~~~~~~e~slI~~Ll  855 (1351)
T KOG1035|consen  789 DTSSNKYNSKIDMYSLGIVLFEMLY---PFGTSMERASILTN-LRK---------GSIPEPADFFDPEHPEEASLIRWLL  855 (1351)
T ss_pred             ccccccccchhhhHHHHHHHHHHhc---cCCchHHHHHHHHh-ccc---------CCCCCCcccccccchHHHHHHHHHh
Confidence            54   49999999999999999984   67655444333222 221         1222221122344555678999999


Q ss_pred             CCCCCCCCCHHHHHH
Q 003296          813 SVSPEARPKMKSVLR  827 (833)
Q Consensus       813 ~~dP~~Rps~~evl~  827 (833)
                      +.||.+|||+.|++.
T Consensus       856 ~hdP~kRPtA~eLL~  870 (1351)
T KOG1035|consen  856 SHDPSKRPTATELLN  870 (1351)
T ss_pred             cCCCccCCCHHHHhh
Confidence            999999999999986

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=100.00  E-value=1.2e-36  Score=323.69  Aligned_cols=245  Identities=14%  Similarity=0.239  Sum_probs=196.7

Q ss_pred             ccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCC
Q 003296          560 LNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       560 ~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~  638 (833)
                      ...||+|+||.||+|.. .+|..||||++....    ....+.+.+|+.++++++||||+++++++...+..++||||++
T Consensus        25 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  100 (292)
T cd06657          25 FIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRK----QQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLE  100 (292)
T ss_pred             HHHcCCCCCeEEEEEEEcCCCeEEEEEEecccc----hhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCC
Confidence            36799999999999987 589999999984221    2235679999999999999999999999999999999999999


Q ss_pred             CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCc
Q 003296          639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS  718 (833)
Q Consensus       639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~  718 (833)
                      +++|.+++..   ..+++.....++.|++.|++|||   +.+++||||||+||++++++.++++|||++........  .
T Consensus       101 ~~~L~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH---~~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~--~  172 (292)
T cd06657         101 GGALTDIVTH---TRMNEEQIAAVCLAVLKALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP--R  172 (292)
T ss_pred             CCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEEcccccceecccccc--c
Confidence            9999998864   35899999999999999999999   78999999999999999999999999999876543221  1


Q ss_pred             cccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHH
Q 003296          719 LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVR  798 (833)
Q Consensus       719 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (833)
                      .....|+++|+|||+..+..++.++|||||||++|||++|+.||........ .......   .    ......    ..
T Consensus       173 ~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~~~~-~~~~~~~---~----~~~~~~----~~  240 (292)
T cd06657         173 RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKA-MKMIRDN---L----PPKLKN----LH  240 (292)
T ss_pred             ccccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHhh---C----CcccCC----cc
Confidence            1345789999999998888889999999999999999999999975433211 1111000   0    000000    01


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          799 SQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       799 ~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .....+.+++.+||+.||.+||++.|++++
T Consensus       241 ~~~~~l~~li~~~l~~~P~~R~~~~~ll~~  270 (292)
T cd06657         241 KVSPSLKGFLDRLLVRDPAQRATAAELLKH  270 (292)
T ss_pred             cCCHHHHHHHHHHHhCCcccCcCHHHHhcC
Confidence            223456789999999999999999999874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=100.00  E-value=1.9e-36  Score=320.00  Aligned_cols=244  Identities=18%  Similarity=0.183  Sum_probs=188.3

Q ss_pred             ccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHH---HHhcCCCCCcccceEEEecCCceEEEEeeC
Q 003296          562 VELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELE---VLGKLSNSNVMTPLAYVLASDSAYLFYEYA  637 (833)
Q Consensus       562 ~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~---~l~~l~H~niv~~~~~~~~~~~~~lv~ey~  637 (833)
                      +||+|+||.||+|.. .+|+.||+|.+..+ ..........+..|..   .++..+||+|+++++++..++..++||||+
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~   79 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKK-RIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLM   79 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeecc-ccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecC
Confidence            489999999999987 46899999998432 1111112223444544   444567999999999999999999999999


Q ss_pred             CCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCC
Q 003296          638 PKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG  717 (833)
Q Consensus       638 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~  717 (833)
                      ++|+|.+++..  ...++|..+..++.|+++|++|||   +.+|+||||||+||++++++.+|++|||+++......   
T Consensus        80 ~g~~L~~~l~~--~~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~---  151 (278)
T cd05606          80 NGGDLHYHLSQ--HGVFSEAEMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK---  151 (278)
T ss_pred             CCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCEEcCCCCHHHEEECCCCCEEEccCcCccccCccC---
Confidence            99999999875  346999999999999999999999   7889999999999999999999999999987553222   


Q ss_pred             ccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHH-HHHHhhcccccccccccccccCCch
Q 003296          718 SLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAK-WVLRNSAQQDKLDHILDFNVSRTSL  795 (833)
Q Consensus       718 ~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  795 (833)
                       .....|+..|+|||++.++ .++.++||||+||++|||++|+.||.+...... .......       .....+.    
T Consensus       152 -~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-------~~~~~~~----  219 (278)
T cd05606         152 -PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTL-------TMAVELP----  219 (278)
T ss_pred             -CcCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccchHHHHHHhh-------ccCCCCC----
Confidence             1345799999999998754 689999999999999999999999975422111 1100000       0011111    


Q ss_pred             hHHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296          796 AVRSQMLTVLKVAVACVSVSPEARP-----KMKSVLRM  828 (833)
Q Consensus       796 ~~~~~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~  828 (833)
                        ...+.++.+++.+|+..+|++||     ++.|++++
T Consensus       220 --~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~~  255 (278)
T cd05606         220 --DSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKEH  255 (278)
T ss_pred             --CcCCHHHHHHHHHHhhcCHHhccCCCCCCHHHHHhC
Confidence              11245788999999999999999     99999865

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=100.00  E-value=4.8e-36  Score=324.89  Aligned_cols=261  Identities=13%  Similarity=0.189  Sum_probs=194.3

Q ss_pred             cccccC--cccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeC
Q 003296          561 NVELKT--RFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYA  637 (833)
Q Consensus       561 ~~ig~g--~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~  637 (833)
                      ..||+|  +||+||+|+. .+|+.||||++......  ....+.+.+|+.+++.++|||||+++++|..++..++||||+
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~--~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~   81 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCT--EEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFM   81 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCC--HHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecc
Confidence            356666  9999999997 48999999998422211  123467899999999999999999999999999999999999


Q ss_pred             CCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCC
Q 003296          638 PKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG  717 (833)
Q Consensus       638 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~  717 (833)
                      ++|++.+++.......+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+|++||+.+..........
T Consensus        82 ~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~  158 (328)
T cd08226          82 AYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLH---QNGYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKA  158 (328)
T ss_pred             cCCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEeCCCcEEEechHHHhhhhccCccc
Confidence            9999999998654456899999999999999999999   7899999999999999999999999998653322111100


Q ss_pred             -----ccccccccccccccccccCC--cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccc--------
Q 003296          718 -----SLSTVAGSVGYIPPEYAYTM--RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL--------  782 (833)
Q Consensus       718 -----~~~~~~gt~~y~aPE~~~~~--~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~--------  782 (833)
                           ......++..|||||++.+.  .++.++|||||||++|||++|+.||....................        
T Consensus       159 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (328)
T cd08226         159 KVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRTQMLLQKLKGPPYSPLDITTFPC  238 (328)
T ss_pred             cccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChHHHHHHHhcCCCCCCccccccch
Confidence                 00112456779999998763  478999999999999999999999975432221111110000000        


Q ss_pred             -----------------c---------ccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          783 -----------------D---------HILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       783 -----------------~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                                       .         .+.+....  ..........+.+++.+||+.||++|||+.|++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~~  308 (328)
T cd08226         239 EESRMKNSQSGVDSGIGESVVAAGMTQTMTSERLR--TPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLSH  308 (328)
T ss_pred             hhhhhccchhhhhcccccchhcccccccccccccc--chhhhhhhHHHHHHHHHHccCCcccCCCHHHHhhC
Confidence                             0         00000000  11123456678999999999999999999999875

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=100.00  E-value=6.9e-36  Score=317.59  Aligned_cols=263  Identities=19%  Similarity=0.202  Sum_probs=199.4

Q ss_pred             cCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC---CCCCcccceEEEecCCc---
Q 003296          557 ANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL---SNSNVMTPLAYVLASDS---  629 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l---~H~niv~~~~~~~~~~~---  629 (833)
                      |+..+.||+|+||.||+|+.. +|+.||||+++....  .......+.+|+++++++   +||||+++++++...+.   
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~--~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~   78 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLS--EEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRE   78 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccc--cchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCC
Confidence            456789999999999999986 589999999952221  222345677888887666   59999999999998776   


Q ss_pred             --eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          630 --AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       630 --~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                        .+++|||++ ++|.+++.......++|..+..++.|+++||+|||   +.+++|+||||+||+++.++.+|++|||++
T Consensus        79 ~~~~l~~e~~~-~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH---~~~i~h~~l~~~nili~~~~~~~l~dfg~~  154 (287)
T cd07838          79 LKLTLVFEHVD-QDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLH---SHRIVHRDLKPQNILVTSDGQVKIADFGLA  154 (287)
T ss_pred             ceeEEEehhcc-cCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCChhhEEEccCCCEEEeccCcc
Confidence              999999997 48999887654446899999999999999999999   788999999999999999999999999999


Q ss_pred             eeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhc--cccc---c
Q 003296          708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSA--QQDK---L  782 (833)
Q Consensus       708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~--~~~~---~  782 (833)
                      ........   .....++..|+|||++.+..++.++|||||||++|||++|++||.+.............  ....   .
T Consensus       155 ~~~~~~~~---~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (287)
T cd07838         155 RIYSFEMA---LTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEADQLDKIFDVIGLPSEEEWP  231 (287)
T ss_pred             eeccCCcc---cccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHcCCCChHhcC
Confidence            87643321   13346889999999999888999999999999999999999999754432221111100  0000   0


Q ss_pred             ------cccccccccC-CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          783 ------DHILDFNVSR-TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       783 ------~~~~~~~~~~-~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                            .......... ...........+.+++.+||+.||++||++.|++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~~  284 (287)
T cd07838         232 RNVSLPRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQH  284 (287)
T ss_pred             CCcccchhhcccccccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhcC
Confidence                  0000000000 011112345677899999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=100.00  E-value=2.1e-36  Score=326.44  Aligned_cols=267  Identities=21%  Similarity=0.267  Sum_probs=196.6

Q ss_pred             cCCccccccCcccEEEEEEcC---CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC--CceE
Q 003296          557 ANPLNVELKTRFSTYYKAVMP---SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS--DSAY  631 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~--~~~~  631 (833)
                      |+..+.||+|+||.||+|+..   +|..||+|.+... ........+.+.+|++++++++||||+++++++...  +..+
T Consensus         2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~-~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   80 (316)
T cd07842           2 YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGD-KEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVY   80 (316)
T ss_pred             ceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccc-cccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEE
Confidence            667788999999999999974   5899999999532 112223346788999999999999999999999988  7899


Q ss_pred             EEEeeCCCCChhhhhhcCC---CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC----CCCceeccc
Q 003296          632 LFYEYAPKGTLFDVLHGCL---ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS----LKEPQIGDI  704 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~---~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~----~~~~ki~df  704 (833)
                      +||||+++ ++.+++....   ...+++..+..++.|++.||+|||   +.+|+||||||+||+++.    ++.+|++||
T Consensus        81 lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Df  156 (316)
T cd07842          81 LLFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLH---SNWVLHRDLKPANILVMGEGPERGVVKIGDL  156 (316)
T ss_pred             EEEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHH---hCCEeeCCCCHHHEEEcCCCCccceEEECCC
Confidence            99999975 7777765322   236889999999999999999999   788999999999999999    899999999


Q ss_pred             eeeeeeCCCCC-CCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHH------------H
Q 003296          705 ELCKVIDPSKS-TGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELA------------K  770 (833)
Q Consensus       705 gl~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~------------~  770 (833)
                      |+++....... ........||+.|+|||++.+. .++.++|||||||++|||++|+.||.+.....            .
T Consensus       157 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (316)
T cd07842         157 GLARLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLER  236 (316)
T ss_pred             ccccccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCcccccccchhHHHHHHH
Confidence            99987643322 1122345789999999987664 57899999999999999999999997432211            0


Q ss_pred             HHHHhhccc----------ccccc----cccccccCCchhH-----HHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          771 WVLRNSAQQ----------DKLDH----ILDFNVSRTSLAV-----RSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       771 ~~~~~~~~~----------~~~~~----~~~~~~~~~~~~~-----~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .+.......          .....    .............     .....++.+++.+|++.||++|||+.|++++
T Consensus       237 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~eil~~  313 (316)
T cd07842         237 IFEVLGTPTEKDWPDIKKMPEYDTLMKDFKTKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRITAEEALEH  313 (316)
T ss_pred             HHHHhCCCchhHHHHHhhcccchhhhhhccCCCCCCccHHHHHHhccCCCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence            000000000          00000    0000000000000     0234568899999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=100.00  E-value=6.1e-36  Score=322.37  Aligned_cols=261  Identities=13%  Similarity=0.149  Sum_probs=193.5

Q ss_pred             ccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCCCCC
Q 003296          562 VELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGT  641 (833)
Q Consensus       562 ~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~g~  641 (833)
                      ..|.|+++.||++.. +|+.||||++....  ......+.+.+|++++++++||||+++++++..++..+++|||+++|+
T Consensus         9 ~~~~~~~v~~~~~~~-~~~~~avK~~~~~~--~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~   85 (314)
T cd08216           9 CFEDLMIVHLAKHKP-TNTLVAVKKINLDS--CSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGS   85 (314)
T ss_pred             hhcCCceEEEEEecC-CCCEEEEEEEeccc--cchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCC
Confidence            344555555566555 79999999985321  122345689999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCC-----
Q 003296          642 LFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST-----  716 (833)
Q Consensus       642 L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~-----  716 (833)
                      |.++++......+++.....++.|+++||+|||   +.+|+||||||+||+++.++.+|++|||.+.........     
T Consensus        86 l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH---~~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~  162 (314)
T cd08216          86 CEDLLKTHFPEGLPELAIAFILKDVLNALDYIH---SKGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVH  162 (314)
T ss_pred             HHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCcceEEEecCCceEEecCccceeeccccccccccc
Confidence            999998654456889999999999999999999   789999999999999999999999999998765322111     


Q ss_pred             CccccccccccccccccccC--CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc-c------------
Q 003296          717 GSLSTVAGSVGYIPPEYAYT--MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD-K------------  781 (833)
Q Consensus       717 ~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~-~------------  781 (833)
                      .......++..|+|||++.+  ..++.++|||||||++|||++|+.||.................. .            
T Consensus       163 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (314)
T cd08216         163 DFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPATQMLLEKVRGTVPCLLDKSTYPLYEDS  242 (314)
T ss_pred             cccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCccccccCchhhhcCC
Confidence            11133567889999999875  35889999999999999999999999754432222111100000 0            


Q ss_pred             ccc----ccccccc--CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          782 LDH----ILDFNVS--RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       782 ~~~----~~~~~~~--~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ...    ..++...  ...........++.+++.+||+.||++|||++|++++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~  295 (314)
T cd08216         243 MSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLNH  295 (314)
T ss_pred             cCcccccccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhcC
Confidence            000    0000000  0011112334678899999999999999999999875

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=100.00  E-value=3.6e-36  Score=319.29  Aligned_cols=264  Identities=18%  Similarity=0.242  Sum_probs=199.9

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|+..+.||+|++|.||+|+.. +|..||||+++...   .....+.+.+|++++++++||||+++++++...+..++||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   77 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDA---EEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVF   77 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccc---cccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEE
Confidence            3677889999999999999975 78999999984221   1223467889999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCC-CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          635 EYAPKGTLFDVLHGCL-ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~-~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||+++ +|.+++.... ...+++..+..++.|++.||+|||   ..+++||||||+||++++++.+|++|||+++.....
T Consensus        78 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~  153 (284)
T cd07836          78 EYMDK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCH---ENRVLHRDLKPQNLLINKRGELKLADFGLARAFGIP  153 (284)
T ss_pred             ecCCc-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEECCCCcEEEeecchhhhhcCC
Confidence            99985 8999886533 246899999999999999999999   778999999999999999999999999999765332


Q ss_pred             CCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhc--c--ccccccc---
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSA--Q--QDKLDHI---  785 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~--~--~~~~~~~---  785 (833)
                      ..  ......+|..|+|||++.+. .++.++|||||||++|||++|+.||.+.............  .  ......+   
T Consensus       154 ~~--~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (284)
T cd07836         154 VN--TFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIMGTPTESTWPGISQL  231 (284)
T ss_pred             cc--ccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhHHHHhcC
Confidence            21  11345678999999988654 4789999999999999999999999765432221111000  0  0000000   


Q ss_pred             --ccccccCCc-----hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          786 --LDFNVSRTS-----LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       786 --~~~~~~~~~-----~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        .........     .........+.+++.+|++.||.+||++.|++++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~~  281 (284)
T cd07836         232 PEYKPTFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQH  281 (284)
T ss_pred             chhcccccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence              000000000     0011234578899999999999999999999864

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=100.00  E-value=2.8e-36  Score=316.04  Aligned_cols=245  Identities=18%  Similarity=0.249  Sum_probs=196.7

Q ss_pred             cccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCCCCC
Q 003296          563 ELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGT  641 (833)
Q Consensus       563 ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~g~  641 (833)
                      ||.|+||.||+|+.. +++.||+|++... ........+.+.+|++++++++||||+++++++.+++..++||||+++|+
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~-~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKR-HIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGE   79 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehh-cchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCc
Confidence            689999999999975 5899999998422 22222345689999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCcccc
Q 003296          642 LFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST  721 (833)
Q Consensus       642 L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~  721 (833)
                      |.+++.+  ...+++..+..++.|++.||+|+|   +.+++|+||||+||+++.++.+|++|||+++......   ....
T Consensus        80 L~~~l~~--~~~l~~~~~~~~~~~i~~~l~~lH---~~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~---~~~~  151 (262)
T cd05572          80 LWTILRD--RGLFDEYTARFYIACVVLAFEYLH---NRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQ---KTWT  151 (262)
T ss_pred             HHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCHHHEEEcCCCCEEEeeCCcccccCccc---cccc
Confidence            9999986  345899999999999999999999   7899999999999999999999999999998764332   1134


Q ss_pred             ccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc-HHHHHHHhhcccccccccccccccCCchhHHHH
Q 003296          722 VAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE-LAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQ  800 (833)
Q Consensus       722 ~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  800 (833)
                      ..|++.|+|||++.+..++.++|+||+||++|||++|+.||..... .............      ....+      ...
T Consensus       152 ~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~------~~~~~------~~~  219 (262)
T cd05572         152 FCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDPMEIYNDILKGNG------KLEFP------NYI  219 (262)
T ss_pred             ccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCCHHHHHHHHhccCC------CCCCC------ccc
Confidence            5789999999998888899999999999999999999999975442 1222211110000      00000      112


Q ss_pred             HHHHHHHHHhccCCCCCCCCC-----HHHHHHH
Q 003296          801 MLTVLKVAVACVSVSPEARPK-----MKSVLRM  828 (833)
Q Consensus       801 ~~~~~~l~~~cl~~dP~~Rps-----~~evl~~  828 (833)
                      ..++.+++.+||+.+|++||+     ++|++++
T Consensus       220 ~~~~~~~i~~~l~~~p~~R~~~~~~~~~~l~~~  252 (262)
T cd05572         220 DKAAKDLIKQLLRRNPEERLGNLKGGIKDIKKH  252 (262)
T ss_pred             CHHHHHHHHHHccCChhhCcCCcccCHHHHhcC
Confidence            457889999999999999999     7777653

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-37  Score=301.18  Aligned_cols=259  Identities=19%  Similarity=0.237  Sum_probs=203.7

Q ss_pred             cccccCcccEEEEEE-cCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCCceEEEEeeCC
Q 003296          561 NVELKTRFSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~~~~lv~ey~~  638 (833)
                      +++|+|+|+.|-.|+ ..+|.+||||++.+.    ....+.+..+|++++.+.+ |+||++++++|+++..+|||||-|.
T Consensus        84 e~LGeGAyasVqtcv~i~t~~EYAVKiidKq----~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVfEKm~  159 (463)
T KOG0607|consen   84 ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQ----PGHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVFEKMR  159 (463)
T ss_pred             HHhcCccceeeeeeeeeccchhhhhhhhhcC----CchHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEEeccc
Confidence            689999999999998 479999999999422    2345678999999999996 9999999999999999999999999


Q ss_pred             CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC---CceeccceeeeeeCCC--
Q 003296          639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK---EPQIGDIELCKVIDPS--  713 (833)
Q Consensus       639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~---~~ki~dfgl~~~~~~~--  713 (833)
                      ||+|.+++++  ...+++.++.++..+||.||.|||   ..+|.|||+||+|||-.+-.   -+||+||.+..-+...  
T Consensus       160 GGplLshI~~--~~~F~E~EAs~vvkdia~aLdFlH---~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~  234 (463)
T KOG0607|consen  160 GGPLLSHIQK--RKHFNEREASRVVKDIASALDFLH---TKGIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNND  234 (463)
T ss_pred             CchHHHHHHH--hhhccHHHHHHHHHHHHHHHHHHh---hcCcccccCCccceeecCCCCcCceeeeccccccccccCCC
Confidence            9999999987  456899999999999999999999   89999999999999996544   3699999886543211  


Q ss_pred             ---CCCCcccccccccccccccccc-----CCcccccCcchhhHHHHHHHHhCCCcccCCcc-HHHHHHHhh---ccccc
Q 003296          714 ---KSTGSLSTVAGSVGYIPPEYAY-----TMRVTMAGNVYSFGVILLELLTGKTAVNQGNE-LAKWVLRNS---AQQDK  781 (833)
Q Consensus       714 ---~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~-~~~~~~~~~---~~~~~  781 (833)
                         ..+....+.+|+..|||||+..     ...|+.++|.||+|||+|-|++|.+||.+... ..-|-....   .+..-
T Consensus       235 ~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGWdrGe~Cr~CQ~~L  314 (463)
T KOG0607|consen  235 CSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCGWDRGEVCRVCQNKL  314 (463)
T ss_pred             CCCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCCcCCccCCCccHHHHHHH
Confidence               1122345678999999999753     34589999999999999999999999974322 111210000   00011


Q ss_pred             ccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          782 LDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       782 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .+.+-+..+..+..++...+.+..+++...+..||.+|.++.+++.+
T Consensus       315 FesIQEGkYeFPdkdWahIS~eakdlisnLlvrda~~rlsa~~vlnh  361 (463)
T KOG0607|consen  315 FESIQEGKYEFPDKDWAHISSEAKDLISNLLVRDAKQRLSAAQVLNH  361 (463)
T ss_pred             HHHHhccCCcCChhhhHHhhHHHHHHHHHHHhccHHhhhhhhhccCC
Confidence            22222333344455667788899999999999999999999998863

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=100.00  E-value=5.7e-36  Score=322.09  Aligned_cols=267  Identities=17%  Similarity=0.216  Sum_probs=196.5

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC-----
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD-----  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~-----  628 (833)
                      +.|+..+.||+|+||.||+|... +|+.||||++....  ........+.+|++++++++||||++++++|...+     
T Consensus        12 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   89 (310)
T cd07865          12 SKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMEN--EKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNR   89 (310)
T ss_pred             hheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccC--CcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccC
Confidence            46888899999999999999974 79999999984221  11222345678999999999999999999987654     


Q ss_pred             ---ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccce
Q 003296          629 ---SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIE  705 (833)
Q Consensus       629 ---~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfg  705 (833)
                         ..++||||+. ++|.+++... ...+++.++..++.|+++||+|||   ..+++||||||+||+++.++.+|++|||
T Consensus        90 ~~~~~~lv~e~~~-~~l~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg  164 (310)
T cd07865          90 YKGSFYLVFEFCE-HDLAGLLSNK-NVKFTLSEIKKVMKMLLNGLYYIH---RNKILHRDMKAANILITKDGILKLADFG  164 (310)
T ss_pred             CCceEEEEEcCCC-cCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEECCCCcEEECcCC
Confidence               3599999996 4888888753 236899999999999999999999   7789999999999999999999999999


Q ss_pred             eeeeeCCCCCC--CccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccc
Q 003296          706 LCKVIDPSKST--GSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL  782 (833)
Q Consensus       706 l~~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~  782 (833)
                      ++.........  .......++..|+|||++.+. .++.++|||||||++|||+||+.||................+...
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~~~~~~~~~~~~~~~~  244 (310)
T cd07865         165 LARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLISQLCGSIT  244 (310)
T ss_pred             CcccccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCC
Confidence            99866432211  112345678899999987654 378899999999999999999999975543322111100000000


Q ss_pred             ccc---------cc-ccccCCch-hHH------HHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          783 DHI---------LD-FNVSRTSL-AVR------SQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       783 ~~~---------~~-~~~~~~~~-~~~------~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ..+         .+ ........ ...      .....+.+++.+||..||++|||++|++++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~h  307 (310)
T cd07865         245 PEVWPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDADTALNH  307 (310)
T ss_pred             hhhcccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhccCHHHHhcC
Confidence            000         00 00000000 000      012456789999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=100.00  E-value=5.1e-37  Score=298.54  Aligned_cols=267  Identities=21%  Similarity=0.241  Sum_probs=199.5

Q ss_pred             HhcCCccccccCcccEEEEEEcCC-----CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec-CC
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPS-----GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA-SD  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~-----~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~-~~  628 (833)
                      ..|+....||+|.||.||||+..+     .+.+|+|+++..++  ..+......||+.+++.++|||||.+..++.. +.
T Consensus        24 ~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd--~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~  101 (438)
T KOG0666|consen   24 FEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKD--GTGISMSACREIALLRELKHPNVISLVKVFLSHDK  101 (438)
T ss_pred             HHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCC--CCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCc
Confidence            467888999999999999997532     34799999953221  23445678999999999999999999999987 77


Q ss_pred             ceEEEEeeCCCCChhhhhhcCC---CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC----CCcee
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCL---ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL----KEPQI  701 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~---~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~----~~~ki  701 (833)
                      .+++++||++. ||.++++-.+   ...++-...+.|..||+.|+.|||   ++-|+|||+||+|||+..+    |.+||
T Consensus       102 ~v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH---~NWvlHRDLKPaNIlvmgdgperG~VKI  177 (438)
T KOG0666|consen  102 KVWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLH---SNWVLHRDLKPANILVMGDGPERGRVKI  177 (438)
T ss_pred             eEEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHh---hhheeeccCCcceEEEeccCCccCeeEe
Confidence            89999999988 9999987432   236888999999999999999999   7789999999999999877    89999


Q ss_pred             ccceeeeeeCCCCCCC-ccccccccccccccccccCCc-ccccCcchhhHHHHHHHHhCCCcccCCcc---------HHH
Q 003296          702 GDIELCKVIDPSKSTG-SLSTVAGSVGYIPPEYAYTMR-VTMAGNVYSFGVILLELLTGKTAVNQGNE---------LAK  770 (833)
Q Consensus       702 ~dfgl~~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~S~Gvvl~elltg~~p~~~~~~---------~~~  770 (833)
                      +|+|+++.....-... ....++-|..|.|||.+.+.+ |+.+.||||.|||+.||+|-++-|.+...         ..+
T Consensus       178 aDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g~E~k~~~~~Pfq~dQ  257 (438)
T KOG0666|consen  178 ADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKGREEKIKTKNPFQHDQ  257 (438)
T ss_pred             ecccHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccccchhhhcccCCCchHHH
Confidence            9999999876443322 334577899999999998765 99999999999999999999888863221         011


Q ss_pred             HHHHhhcccccccccccccccCCchh-----------------------HHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 003296          771 WVLRNSAQQDKLDHILDFNVSRTSLA-----------------------VRSQMLTVLKVAVACVSVSPEARPKMKSVLR  827 (833)
Q Consensus       771 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~  827 (833)
                      ..+....- +....-..+.+...+..                       .........+++.++|..||-+|.|++|.++
T Consensus       258 l~rIf~vL-G~Pt~~~Wp~lkk~Pe~q~~ls~f~~~~~~n~sL~~~~~~~k~k~~~a~~LL~klL~yDP~kRIta~qAle  336 (438)
T KOG0666|consen  258 LDRIFEVL-GTPTDKDWPDLKKMPEYQTLLSDFRRHYYDNVSLHKYYHKHKVKDPSALDLLQKLLTYDPIKRITAEQALE  336 (438)
T ss_pred             HHHHHHHc-CCCccccchhhhhCcchHHHHHHhHHhhcCcchHHHHHHHhcCCCchHHHHHHHHhccCchhhccHHHHhc
Confidence            11100000 00000001111000000                       0001234789999999999999999999987


Q ss_pred             H
Q 003296          828 M  828 (833)
Q Consensus       828 ~  828 (833)
                      +
T Consensus       337 h  337 (438)
T KOG0666|consen  337 H  337 (438)
T ss_pred             c
Confidence            6

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=7.7e-37  Score=325.56  Aligned_cols=248  Identities=20%  Similarity=0.325  Sum_probs=200.2

Q ss_pred             ccccccCcccEEEEEEcC--CC--ceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          560 LNVELKTRFSTYYKAVMP--SG--MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       560 ~~~ig~g~~g~vy~~~~~--~~--~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      .++||+|.||.|++|.+.  .|  ..||||+++.. ...  ....+|.+|+.+|-+++|||+|++||...+ ....+|||
T Consensus       115 ~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d-~l~--~~mddflrEas~M~~L~H~hliRLyGvVl~-qp~mMV~E  190 (1039)
T KOG0199|consen  115 YELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDD-SLN--AIMDDFLREASHMLKLQHPHLIRLYGVVLD-QPAMMVFE  190 (1039)
T ss_pred             HHHhcCcceeeEeeccccCCCCcEEeEEEEeccCC-ccc--hhHHHHHHHHHHHHhccCcceeEEeeeecc-chhhHHhh
Confidence            468999999999999974  44  46899999532 221  256789999999999999999999999987 67899999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      .++.|+|.+.|++.....+--.....++.|||.|+.||.   ..+.||||+...|+|+-....+||+|||+.+.+...+.
T Consensus       191 LaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLe---skrlvHRDLAARNlllasprtVKI~DFGLmRaLg~ned  267 (1039)
T KOG0199|consen  191 LAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLE---SKRLVHRDLAARNLLLASPRTVKICDFGLMRALGENED  267 (1039)
T ss_pred             hcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHh---hhhhhhhhhhhhhheecccceeeeecccceeccCCCCc
Confidence            999999999999855667888888999999999999999   88999999999999999999999999999998865543


Q ss_pred             CCccc-cccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          716 TGSLS-TVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       716 ~~~~~-~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      .-.+. ...-...|.|||.+...+++.++|||+|||++|||+| |+.||.+.....  +.....+++.+        .+ 
T Consensus       268 ~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~q--IL~~iD~~erL--------pR-  336 (1039)
T KOG0199|consen  268 MYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRGIQ--ILKNIDAGERL--------PR-  336 (1039)
T ss_pred             ceEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCHHH--HHHhccccccC--------CC-
Confidence            21111 1122457999999999999999999999999999998 688997654432  11111121211        11 


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                         ...++.++.+++..||+..|++|||+..|.+.
T Consensus       337 ---Pk~csedIY~imk~cWah~paDRptFsair~~  368 (1039)
T KOG0199|consen  337 ---PKYCSEDIYQIMKNCWAHNPADRPTFSAIRED  368 (1039)
T ss_pred             ---CCCChHHHHHHHHHhccCCccccccHHHHHHh
Confidence               12456788999999999999999999999744

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=100.00  E-value=7.4e-36  Score=319.90  Aligned_cols=269  Identities=20%  Similarity=0.239  Sum_probs=201.3

Q ss_pred             HHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC--
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD--  628 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~--  628 (833)
                      ...++|+..+.+|+|+||.||+|... +|+.||||+++...  ........+.+|++++++++||||+++++++.+.+  
T Consensus         4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~--~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~   81 (302)
T cd07864           4 RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDN--EKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDA   81 (302)
T ss_pred             hhhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecc--cccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchh
Confidence            45678889999999999999999985 68999999985321  12223457889999999999999999999997655  


Q ss_pred             --------ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCce
Q 003296          629 --------SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQ  700 (833)
Q Consensus       629 --------~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~k  700 (833)
                              ..++|+||+++ ++.+.+... ...+++..+..++.|++.||+|||   ..+|+||||||+||++++++.+|
T Consensus        82 ~~~~~~~~~~~lv~e~~~~-~l~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH---~~~i~H~dl~p~nili~~~~~~k  156 (302)
T cd07864          82 LDFKKDKGAFYLVFEYMDH-DLMGLLESG-LVHFSEDHIKSFMKQLLEGLNYCH---KKNFLHRDIKCSNILLNNKGQIK  156 (302)
T ss_pred             hhccccCCcEEEEEcccCc-cHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCcEE
Confidence                    78999999986 777777653 346899999999999999999999   78999999999999999999999


Q ss_pred             eccceeeeeeCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccc
Q 003296          701 IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQ  779 (833)
Q Consensus       701 i~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~  779 (833)
                      ++|||++......... ......++..|+|||++.+ ..++.++|||||||++|||++|++||.................
T Consensus       157 l~dfg~~~~~~~~~~~-~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~  235 (302)
T cd07864         157 LADFGLARLYNSEESR-PYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRLCG  235 (302)
T ss_pred             eCcccccccccCCccc-ccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhC
Confidence            9999999876433211 1123456889999998764 3578999999999999999999999975543322211111000


Q ss_pred             cc----cccccccccc-----------CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          780 DK----LDHILDFNVS-----------RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       780 ~~----~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ..    ...+......           .........+..+.+++.+||+.||++||++.|++.+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  299 (302)
T cd07864         236 SPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRCTAEEALNS  299 (302)
T ss_pred             CCChhhcccccccccccccccccccccchhhhcCCCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            00    0000000000           0000011234578899999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=100.00  E-value=1.3e-35  Score=308.83  Aligned_cols=250  Identities=22%  Similarity=0.314  Sum_probs=203.7

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +|+..+.||+|++|.||+|... +|..||+|++.....    ...+.+.+|++++++++||||+++++++...+..++++
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~----~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~   76 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESK----EKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVM   76 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccch----hHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEE
Confidence            3667789999999999999985 789999999943221    24578999999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++++|.+++.... ..+++..+..++.|++.|++|||   ..+++||||+|+||++++++.+||+|||.+.......
T Consensus        77 e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lh---~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~  152 (253)
T cd05122          77 EFCSGGSLKDLLKSTN-QTLTESQIAYVCKELLKGLEYLH---SNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTK  152 (253)
T ss_pred             ecCCCCcHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhh---cCCEecCCCCHHHEEEccCCeEEEeeccccccccccc
Confidence            9999999999987632 46899999999999999999999   7899999999999999999999999999988765432


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCc
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS  794 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (833)
                      .   .....|+..|+|||++.+..++.++|||||||++|||++|+.||..............   .......+       
T Consensus       153 ~---~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~---~~~~~~~~-------  219 (253)
T cd05122         153 A---RNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPMKALFKIAT---NGPPGLRN-------  219 (253)
T ss_pred             c---ccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHh---cCCCCcCc-------
Confidence            1   2346789999999999888899999999999999999999999975433222111111   00011100       


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          795 LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       795 ~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        ......++.+++.+||+.||++|||+.|++++
T Consensus       220 --~~~~~~~~~~~i~~~l~~~p~~R~t~~~~l~~  251 (253)
T cd05122         220 --PEKWSDEFKDFLKKCLQKNPEKRPTAEQLLKH  251 (253)
T ss_pred             --ccccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence              00113568899999999999999999999875

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=100.00  E-value=3.5e-36  Score=320.35  Aligned_cols=252  Identities=18%  Similarity=0.199  Sum_probs=197.0

Q ss_pred             cCCccccccCcccEEEEEEc----CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceE
Q 003296          557 ANPLNVELKTRFSTYYKAVM----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~  631 (833)
                      |+..+.||+|+||.||+|..    .+|..||+|++............+++.+|+++++++ +||||+++++++..+...|
T Consensus         2 y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~   81 (290)
T cd05613           2 FELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKLH   81 (290)
T ss_pred             ceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeEE
Confidence            56778999999999999986    378999999985322222233456789999999999 5999999999999999999


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      +||||+++|+|.+++..  ...+++.+...++.|+++||+|||   +.+++||||||+||++++++.+|++|||+++...
T Consensus        82 lv~e~~~~~~L~~~l~~--~~~l~~~~~~~~~~qi~~al~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~  156 (290)
T cd05613          82 LILDYINGGELFTHLSQ--RERFKEQEVQIYSGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFH  156 (290)
T ss_pred             EEEecCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeEECCCCCEEEeeCccceecc
Confidence            99999999999999975  346889999999999999999999   7899999999999999999999999999998754


Q ss_pred             CCCCCCccccccccccccccccccCC--cccccCcchhhHHHHHHHHhCCCcccCCcc---HHHHHHHhhcccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTM--RVTMAGNVYSFGVILLELLTGKTAVNQGNE---LAKWVLRNSAQQDKLDHIL  786 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~---~~~~~~~~~~~~~~~~~~~  786 (833)
                      ..... ......|+..|+|||++.+.  .++.++|||||||++|||++|+.||.....   ...+........       
T Consensus       157 ~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~-------  228 (290)
T cd05613         157 EDEVE-RAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQAEISRRILKSE-------  228 (290)
T ss_pred             ccccc-ccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCccccHHHHHHHhhccC-------
Confidence            32211 22346789999999998753  467899999999999999999999963221   111111111100       


Q ss_pred             cccccCCchhHHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296          787 DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARP-----KMKSVLRM  828 (833)
Q Consensus       787 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~  828 (833)
                       +..      .......+.+++.+||+.||++||     ++++++.+
T Consensus       229 -~~~------~~~~~~~~~~ll~~~l~~~p~~R~~~~~~~~~~l~~~  268 (290)
T cd05613         229 -PPY------PQEMSALAKDIIQRLLMKDPKKRLGCGPSDADEIKKH  268 (290)
T ss_pred             -CCC------CccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHcC
Confidence             000      011234677899999999999997     77777664

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=8.9e-36  Score=311.87  Aligned_cols=244  Identities=16%  Similarity=0.161  Sum_probs=188.5

Q ss_pred             cccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHH-hcCCCCCcccceEEEecCCceEEEEeeCC
Q 003296          561 NVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVL-GKLSNSNVMTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l-~~l~H~niv~~~~~~~~~~~~~lv~ey~~  638 (833)
                      +.+|+|+||.||+|.. .+|+.||||.+..... ........+..|..++ ...+||||+++++++...+..|+||||++
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDM-IAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLN   80 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhh-hHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccC
Confidence            4689999999999997 4789999999842221 1112233455665554 45589999999999999999999999999


Q ss_pred             CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCc
Q 003296          639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS  718 (833)
Q Consensus       639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~  718 (833)
                      +|+|.+++..  ...+++..+..++.|++.||.|||   +.+++||||||+||++++++.+|++|||+++....      
T Consensus        81 ~~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~------  149 (260)
T cd05611          81 GGDCASLIKT--LGGLPEDWAKQYIAEVVLGVEDLH---QRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLE------  149 (260)
T ss_pred             CCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCcEEEeecccceeccc------
Confidence            9999999975  346889999999999999999999   78999999999999999999999999999876432      


Q ss_pred             cccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHH
Q 003296          719 LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVR  798 (833)
Q Consensus       719 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (833)
                      .....|++.|+|||+..+..++.++|||||||++|||++|+.||........+... .......          ......
T Consensus       150 ~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~-~~~~~~~----------~~~~~~  218 (260)
T cd05611         150 NKKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPDAVFDNI-LSRRINW----------PEEVKE  218 (260)
T ss_pred             cccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHH-HhcccCC----------CCcccc
Confidence            12356889999999998888899999999999999999999999754432222111 1100000          000011


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 003296          799 SQMLTVLKVAVACVSVSPEARPKMKSVLR  827 (833)
Q Consensus       799 ~~~~~~~~l~~~cl~~dP~~Rps~~evl~  827 (833)
                      ..+.++.+++.+||+.+|++||++.++.+
T Consensus       219 ~~~~~~~~~i~~~l~~~p~~R~~~~~~~~  247 (260)
T cd05611         219 FCSPEAVDLINRLLCMDPAKRLGANGYQE  247 (260)
T ss_pred             cCCHHHHHHHHHHccCCHHHccCCCcHHH
Confidence            23457889999999999999997754433

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-36  Score=328.33  Aligned_cols=197  Identities=23%  Similarity=0.303  Sum_probs=170.3

Q ss_pred             CccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC------CceE
Q 003296          559 PLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS------DSAY  631 (833)
Q Consensus       559 ~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~------~~~~  631 (833)
                      ..+.+|+|+||.||+|+. .+|..||||.++..   .....++...+|+++|++++|||||++++.-.+.      +...
T Consensus        17 ~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~---~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~v   93 (732)
T KOG4250|consen   17 MDERLGKGAFGNVYRGRNKETGRLVAVKTFNKE---SSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPV   93 (732)
T ss_pred             ehhhhcCCccceeeeecccccccchhHHhhhhh---cccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccce
Confidence            346899999999999995 68999999999522   2345567899999999999999999999876553      3579


Q ss_pred             EEEeeCCCCChhhhhhcCCC-CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC--CCCC--ceecccee
Q 003296          632 LFYEYAPKGTLFDVLHGCLE-NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK--SLKE--PQIGDIEL  706 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~--~~~~--~ki~dfgl  706 (833)
                      +|||||++|||+.+|.+... ..+++.+.+.+..+++.||.|||   .++||||||||.||++-  ++|+  -|++|||.
T Consensus        94 lvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~Lr---En~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~  170 (732)
T KOG4250|consen   94 LVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLR---ENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGA  170 (732)
T ss_pred             EEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHH---HcCceeccCCCCcEEEeecCCCceEEeeecccc
Confidence            99999999999999986432 37999999999999999999999   88999999999999984  3343  59999999


Q ss_pred             eeeeCCCCCCCcccccccccccccccccc-CCcccccCcchhhHHHHHHHHhCCCcccC
Q 003296          707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAY-TMRVTMAGNVYSFGVILLELLTGKTAVNQ  764 (833)
Q Consensus       707 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~Dv~S~Gvvl~elltg~~p~~~  764 (833)
                      ||..+++.   ...+++||+.|.|||++. ...|+.-+|.|||||++||.+||..||..
T Consensus       171 Arel~d~s---~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p  226 (732)
T KOG4250|consen  171 ARELDDNS---LFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIP  226 (732)
T ss_pred             cccCCCCC---eeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCc
Confidence            99886554   456789999999999998 47899999999999999999999999974

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-35  Score=315.18  Aligned_cols=263  Identities=18%  Similarity=0.206  Sum_probs=203.1

Q ss_pred             cCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      |+..+.||+|++|.||+|... +|+.+|+|++....  ........+.+|++++++++||||+++++++..++..++|||
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e   78 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRF--ESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFE   78 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEecccc--ccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEe
Confidence            456678999999999999974 78999999984322  122345678999999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      |+++ ++.+++... ...+++.++..++.|+++||+|||   ..+|+|+||||+||+++.++.+|++|||.+........
T Consensus        79 ~~~~-~l~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~  153 (283)
T cd05118          79 FMDT-DLYKLIKDR-QRGLPESLIKSYLYQLLQGLAFCH---SHGILHRDLKPENLLINTEGVLKLADFGLARSFGSPVR  153 (283)
T ss_pred             ccCC-CHHHHHHhh-cccCCHHHHHHHHHHHHHHHHHHH---HCCeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCcc
Confidence            9975 898888753 246899999999999999999999   78899999999999999999999999999987654321


Q ss_pred             CCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc----ccccccc---
Q 003296          716 TGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD----KLDHILD---  787 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~---  787 (833)
                        ......++..|+|||.+.+. .++.++||||+||++|||+||+.||..................    ......+   
T Consensus       154 --~~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (283)
T cd05118         154 --PYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSLAR  231 (283)
T ss_pred             --cccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCchHhcccchhhhh
Confidence              12335688899999998776 6899999999999999999999999765543332211110000    0000000   


Q ss_pred             --------ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          788 --------FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       788 --------~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                              ...............++.+++.+||+.||.+||+++|++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~~  280 (283)
T cd05118         232 NYKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALAH  280 (283)
T ss_pred             hhhhhhccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhhC
Confidence                    00000011122345688999999999999999999999875

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=1e-35  Score=315.65  Aligned_cols=262  Identities=19%  Similarity=0.253  Sum_probs=198.2

Q ss_pred             cCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCCceEEEE
Q 003296          557 ANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~~~~lv~  634 (833)
                      |...+.||+|+||.||+|+.. +++.||||++.....   ........+|+..+++++ ||||+++++++..++..++||
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~---~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~   77 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFY---SWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVF   77 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhcc---chhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEE
Confidence            456788999999999999985 688999999842211   112334567999999999 999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+ +|+|.+++.......++|.++..++.|+++||.|||   +.+++|+||||+||++++++.++++|||+++......
T Consensus        78 e~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh---~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~  153 (283)
T cd07830          78 EYM-EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIH---KHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSRP  153 (283)
T ss_pred             ecC-CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEEcCCCCEEEeecccceeccCCC
Confidence            999 889999998654457899999999999999999999   7899999999999999999999999999998764322


Q ss_pred             CCCcccccccccccccccccc-CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhh--cc--------ccccc
Q 003296          715 STGSLSTVAGSVGYIPPEYAY-TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNS--AQ--------QDKLD  783 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~--~~--------~~~~~  783 (833)
                      .   .....|+..|+|||++. ...++.++|||||||++|||++|+.||..............  ..        .....
T Consensus       154 ~---~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (283)
T cd07830         154 P---YTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLA  230 (283)
T ss_pred             C---cCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCChHHHHHHHHHhcCCCChhhhhhHhhhh
Confidence            1   13456889999999875 44578999999999999999999999975433222111000  00        00000


Q ss_pred             ccccccccCCc-----hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          784 HILDFNVSRTS-----LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       784 ~~~~~~~~~~~-----~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ...+.......     .........+.+++.+||+.||++|||++|++.+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~  280 (283)
T cd07830         231 SKLGFRFPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQH  280 (283)
T ss_pred             ccccccccccccccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHHhhC
Confidence            00010100000     0001123578899999999999999999999864

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=100.00  E-value=1.5e-35  Score=309.68  Aligned_cols=253  Identities=19%  Similarity=0.271  Sum_probs=205.0

Q ss_pred             cCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC--CceEEE
Q 003296          557 ANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS--DSAYLF  633 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~--~~~~lv  633 (833)
                      |...+.||+|++|.||+|+.. +|+.|++|++.....  .....+.+.+|++++++++||||+++++++...  +..++|
T Consensus         2 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv   79 (260)
T cd06606           2 WTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGD--SEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIF   79 (260)
T ss_pred             ceeeeEeeecCceEEEEEEECCCCcEEEEEEeecccc--chHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEE
Confidence            566789999999999999976 799999999853221  123457899999999999999999999999988  889999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++++|.+++...  ..++|..+..++.|++.|++|||   +.+++|+|++|+||+++.++.+|++|||.+......
T Consensus        80 ~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lh---~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~  154 (260)
T cd06606          80 LEYVSGGSLSSLLKKF--GKLPEPVIRKYTRQILEGLAYLH---SNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDI  154 (260)
T ss_pred             EEecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEcCCCCEEEcccccEEecccc
Confidence            9999999999999863  37999999999999999999999   789999999999999999999999999999877544


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      ..........++..|+|||...+..++.++|||||||++|||++|+.||............... ......     +   
T Consensus       155 ~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~~-----~---  225 (260)
T cd06606         155 ETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGNPMAALYKIGS-SGEPPE-----I---  225 (260)
T ss_pred             cccccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHhccc-cCCCcC-----C---
Confidence            3211123467899999999998888999999999999999999999999765422221111110 000000     0   


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                         .......+.+++.+|++.||++||++.|++++
T Consensus       226 ---~~~~~~~l~~~i~~~l~~~p~~Rp~~~~ll~~  257 (260)
T cd06606         226 ---PEHLSEEAKDFLRKCLRRDPKKRPTADELLQH  257 (260)
T ss_pred             ---CcccCHHHHHHHHHhCcCChhhCCCHHHHhhC
Confidence               11224578899999999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-38  Score=301.08  Aligned_cols=251  Identities=17%  Similarity=0.229  Sum_probs=196.2

Q ss_pred             ccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEEEEeeC
Q 003296          560 LNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYLFYEYA  637 (833)
Q Consensus       560 ~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~lv~ey~  637 (833)
                      ...||.|+||+|+|... +.|+..|||++....   ...+++++..|.++..+- +.||||++||++..++..|+.||.|
T Consensus        69 lg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n---~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELM  145 (361)
T KOG1006|consen   69 LGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNN---IEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELM  145 (361)
T ss_pred             HHHhcCCcchhhhhhhcCccCcEEEEEEeeecc---chHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHH
Confidence            45799999999999987 589999999995221   234568899999875554 6899999999999999999999999


Q ss_pred             CCCChhhhh---hcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          638 PKGTLFDVL---HGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       638 ~~g~L~~~l---~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      +- |+..+-   +...+..+++.-.-.|+.-.+.||.||-.  ...|||||+||+|||+|..|.+|++|||++..+..+-
T Consensus       146 d~-SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~--~lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~Si  222 (361)
T KOG1006|consen  146 DI-SLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKE--ELKIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDSI  222 (361)
T ss_pred             hh-hHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHH--HhhhhhccCChhheEEecCCCEeeecccchHhHHHHH
Confidence            65 665543   33334568888888899999999999986  5679999999999999999999999999997664332


Q ss_pred             CCCccccccccccccccccccC--CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          715 STGSLSTVAGSVGYIPPEYAYT--MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                         ..+.-+|...|||||.+..  ..|+-+|||||+|++|||+.||+.|+.+.++..+.+........   .++.     
T Consensus       223 ---AkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~svfeql~~Vv~gdp---p~l~-----  291 (361)
T KOG1006|consen  223 ---AKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWDSVFEQLCQVVIGDP---PILL-----  291 (361)
T ss_pred             ---HhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHHHHHHHHHHHHcCCC---Ceec-----
Confidence               1244678999999998863  34999999999999999999999999877665544433332211   1111     


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLR  827 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~  827 (833)
                      ......+....+..++..|+-+|-..||...++.+
T Consensus       292 ~~~~~~~~s~~~~~fintCl~Kd~~~Rpky~~Lk~  326 (361)
T KOG1006|consen  292 FDKECVHYSFSMVRFINTCLIKDRSDRPKYDDLKK  326 (361)
T ss_pred             CcccccccCHHHHHHHHHHhhcccccCcchhhhhc
Confidence            11111235567889999999999999999998765

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=100.00  E-value=1.5e-35  Score=318.00  Aligned_cols=251  Identities=22%  Similarity=0.287  Sum_probs=196.7

Q ss_pred             HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      .+.|+..+.+|+|+||.||+|... ++..||+|++..... ......+++.+|++++++++|||++++++++..++..++
T Consensus        14 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   92 (308)
T cd06634          14 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGK-QSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWL   92 (308)
T ss_pred             HHHHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccc-cChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEE
Confidence            344666788999999999999974 788999999842211 111234578899999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||||+. |++.+++... ...+++.++..++.|++.|+.|||   ..+++||||||+||+++.++.+|++|||++.....
T Consensus        93 v~e~~~-~~l~~~~~~~-~~~l~~~~~~~~~~~l~~~l~~LH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~  167 (308)
T cd06634          93 VMEYCL-GSASDLLEVH-KKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP  167 (308)
T ss_pred             EEEccC-CCHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHhEEECCCCcEEECCcccceeecC
Confidence            999996 6888877643 345899999999999999999999   78899999999999999999999999999876542


Q ss_pred             CCCCCcccccccccccccccccc---CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAY---TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      .      ....|++.|+|||++.   ...++.++|||||||++|||++|+.||....... ........ ..      +.
T Consensus       168 ~------~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~-~~~~~~~~-~~------~~  233 (308)
T cd06634         168 A------NXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS-ALYHIAQN-ES------PA  233 (308)
T ss_pred             c------ccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCccccHHH-HHHHHhhc-CC------CC
Confidence            2      2456899999999874   3467899999999999999999999986533211 11111100 00      00


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML  829 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L  829 (833)
                      .     ........+.+++.+||+.+|++||++.+++++-
T Consensus       234 ~-----~~~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~~~  268 (308)
T cd06634         234 L-----QSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHR  268 (308)
T ss_pred             c-----CcccccHHHHHHHHHHhhCCcccCCCHHHHhhCc
Confidence            0     0112345678999999999999999999998763

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=100.00  E-value=1.1e-35  Score=317.54  Aligned_cols=253  Identities=16%  Similarity=0.240  Sum_probs=195.1

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCCceEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~~~~l  632 (833)
                      ++|+..+.||+|+||.||+|... +|+.||||+++....   ....+++.+|++++.+.. ||||++++++|......|+
T Consensus        15 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~---~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~   91 (296)
T cd06618          15 NDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGN---KEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFI   91 (296)
T ss_pred             chheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCC---hHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEE
Confidence            45677899999999999999986 499999999953211   123456778888777775 9999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||||++ +++.++.... ...+++..+..++.|+++|++|||+  ..+|+||||||+||++++++.+||+|||++.....
T Consensus        92 v~e~~~-~~l~~l~~~~-~~~l~~~~~~~i~~~i~~~l~~lH~--~~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~  167 (296)
T cd06618          92 CMELMS-TCLDKLLKRI-QGPIPEDILGKMTVAIVKALHYLKE--KHGVIHRDVKPSNILLDASGNVKLCDFGISGRLVD  167 (296)
T ss_pred             EeeccC-cCHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHh--hCCEecCCCcHHHEEEcCCCCEEECccccchhccC
Confidence            999985 4777776543 3478999999999999999999993  25899999999999999999999999999876543


Q ss_pred             CCCCCccccccccccccccccccCCc----ccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMR----VTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ...   .....|+..|+|||++.+..    ++.++|||||||++|||++|+.||.......+........ . ..     
T Consensus       168 ~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~-~-~~-----  237 (296)
T cd06618         168 SKA---KTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTEFEVLTKILQE-E-PP-----  237 (296)
T ss_pred             CCc---ccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcchhHHHHHHHHhcC-C-CC-----
Confidence            221   12346888999999987553    7899999999999999999999997533222222111111 0 00     


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .....    .....++.+++.+||+.||++||++.+++++
T Consensus       238 ~~~~~----~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~  273 (296)
T cd06618         238 SLPPN----EGFSPDFCSFVDLCLTKDHRKRPKYRELLQH  273 (296)
T ss_pred             CCCCC----CCCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            00000    0234568899999999999999999999875

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9e-37  Score=306.63  Aligned_cols=245  Identities=25%  Similarity=0.260  Sum_probs=200.9

Q ss_pred             HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~  631 (833)
                      ..+|....+||+|+||.|..|..+ +...+|||+++ ++-..+..+.+--..|-++|+-- +-|.+|+++.+|+.-+.+|
T Consensus       348 ~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLk-KDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLy  426 (683)
T KOG0696|consen  348 ATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILK-KDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLY  426 (683)
T ss_pred             ecccceEEEeccCccceeeeecccCcchhhhhhhhc-cceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhhee
Confidence            347888999999999999999875 56889999995 44444444555667788888776 4688999999999999999


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      .||||+.||||.-+++.  -+.+.++.+..+|.+||-||-|||   +.+||.||+|.+|||+|.+|++||+|||+++.--
T Consensus       427 FVMEyvnGGDLMyhiQQ--~GkFKEp~AvFYAaEiaigLFFLh---~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni  501 (683)
T KOG0696|consen  427 FVMEYVNGGDLMYHIQQ--VGKFKEPVAVFYAAEIAIGLFFLH---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENI  501 (683)
T ss_pred             eEEEEecCchhhhHHHH--hcccCCchhhhhhHHHHHHhhhhh---cCCeeeeeccccceEeccCCceEeeecccccccc
Confidence            99999999999999886  345777888899999999999999   8999999999999999999999999999998654


Q ss_pred             CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      ....  .+.++||||.|+|||++...+|+.++|+|||||+||||+.|++||+++++.. ...          .+.+..+.
T Consensus       502 ~~~~--TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~e-lF~----------aI~ehnvs  568 (683)
T KOG0696|consen  502 FDGV--TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDE-LFQ----------AIMEHNVS  568 (683)
T ss_pred             cCCc--ceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCCCHHH-HHH----------HHHHccCc
Confidence            3332  3467999999999999999999999999999999999999999998655422 111          12222222


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCC
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPK  821 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps  821 (833)
                          .+...+.++.+++...+.+.|.+|..
T Consensus       569 ----yPKslSkEAv~ickg~ltK~P~kRLG  594 (683)
T KOG0696|consen  569 ----YPKSLSKEAVAICKGLLTKHPGKRLG  594 (683)
T ss_pred             ----CcccccHHHHHHHHHHhhcCCccccC
Confidence                12345667888899999999999953

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=6e-36  Score=325.30  Aligned_cols=264  Identities=18%  Similarity=0.204  Sum_probs=198.9

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC-----C
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS-----D  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~-----~  628 (833)
                      +.|...+.||+|+||.||+|.. .+|+.||||++....  ......+.+.+|+.++++++||||+++++++...     .
T Consensus         5 ~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~   82 (337)
T cd07858           5 TKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAF--DNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFN   82 (337)
T ss_pred             cceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccc--cccchhHHHHHHHHHHHhcCCCCccchHHheecccccccC
Confidence            4578889999999999999996 479999999984221  1222345678999999999999999999988754     3


Q ss_pred             ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeee
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK  708 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~  708 (833)
                      ..|+||||+. ++|.+++..  ...+++..+..++.|++.||.|||   ..+++||||||+||+++.++.+|++|||+++
T Consensus        83 ~~~lv~e~~~-~~L~~~~~~--~~~l~~~~~~~i~~qi~~aL~~LH---~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~  156 (337)
T cd07858          83 DVYIVYELMD-TDLHQIIRS--SQTLSDDHCQYFLYQLLRGLKYIH---SANVLHRDLKPSNLLLNANCDLKICDFGLAR  156 (337)
T ss_pred             cEEEEEeCCC-CCHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCEEECcCcccc
Confidence            4799999996 689998875  346899999999999999999999   7899999999999999999999999999998


Q ss_pred             eeCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccc----cccc
Q 003296          709 VIDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQ----DKLD  783 (833)
Q Consensus       709 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~----~~~~  783 (833)
                      ......  .......||..|+|||++.. ..++.++|||||||++|||++|+.||.+..............+    ....
T Consensus       157 ~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  234 (337)
T cd07858         157 TTSEKG--DFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDLG  234 (337)
T ss_pred             ccCCCc--ccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCChHHhh
Confidence            664322  12234578999999998764 4688999999999999999999999975432211110000000    0000


Q ss_pred             ccccccc-------c---CC--chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          784 HILDFNV-------S---RT--SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       784 ~~~~~~~-------~---~~--~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .+.+...       .   ..  .......+.++.+++.+||+.||++|||++|++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h  291 (337)
T cd07858         235 FIRNEKARRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEALAH  291 (337)
T ss_pred             hcCchhhhHHHHhcCcccccCHHHHcccCCHHHHHHHHHHhcCChhhccCHHHHHcC
Confidence            0000000       0   00  00011345678899999999999999999999987

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=100.00  E-value=4.1e-36  Score=319.43  Aligned_cols=254  Identities=18%  Similarity=0.175  Sum_probs=199.0

Q ss_pred             cCCccccccCcccEEEEEEc----CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceE
Q 003296          557 ANPLNVELKTRFSTYYKAVM----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~  631 (833)
                      |+..+.||+|+||.||+|+.    .++..||||.++...........+.+.+|++++.++ +||||+++++++..++..+
T Consensus         2 ~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~   81 (288)
T cd05583           2 FELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLH   81 (288)
T ss_pred             ceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEEE
Confidence            56678999999999999985    367899999985322222233456789999999999 5999999999999999999


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      +||||+++|+|.+++..  ...+++.....++.|+++||+|||   ..+++||||||+||+++.++.++++|||+++...
T Consensus        82 lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~ql~~~l~~lH---~~~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  156 (288)
T cd05583          82 LILDYVNGGELFTHLYQ--REHFTESEVRVYIAEIVLALDHLH---QLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFL  156 (288)
T ss_pred             EEEecCCCCcHHHHHhh--cCCcCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEEEECccccccc
Confidence            99999999999999875  346889999999999999999999   7899999999999999999999999999987654


Q ss_pred             CCCCCCccccccccccccccccccCCc--ccccCcchhhHHHHHHHHhCCCcccCCccHH---HHHHHhhcccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTMR--VTMAGNVYSFGVILLELLTGKTAVNQGNELA---KWVLRNSAQQDKLDHIL  786 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~---~~~~~~~~~~~~~~~~~  786 (833)
                      ..... ......|+..|+|||+..+..  ++.++||||||+++|||++|+.||.......   .........        
T Consensus       157 ~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~--------  227 (288)
T cd05583         157 AEEEE-RAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQSEISRRILKS--------  227 (288)
T ss_pred             ccccc-ccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCcccchHHHHHHHHHcc--------
Confidence            33211 123456899999999987655  7889999999999999999999996432211   111111100        


Q ss_pred             cccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 003296          787 DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLL  830 (833)
Q Consensus       787 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~  830 (833)
                      .+..+      ......+.+++.+||+.||++|||+++|.+.|+
T Consensus       228 ~~~~~------~~~~~~l~~li~~~l~~~p~~R~t~~~~~~~l~  265 (288)
T cd05583         228 KPPFP------KTMSAEARDFIQKLLEKDPKKRLGANGADEIKN  265 (288)
T ss_pred             CCCCC------cccCHHHHHHHHHHhcCCHhhccCcchHHHHhc
Confidence            00011      112346778999999999999999888866654

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.7e-35  Score=310.38  Aligned_cols=254  Identities=19%  Similarity=0.222  Sum_probs=198.6

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccch-hhhccChhHHHHHHHHHhcCCCCCcccceEEEecC--CceE
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDK-IFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS--DSAY  631 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~--~~~~  631 (833)
                      +|...+.||+|+||.||+|.. .+|..||+|.+..... .......+.|.+|++++++++||||+++++++.+.  ...+
T Consensus         3 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~   82 (264)
T cd06653           3 NWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKLS   82 (264)
T ss_pred             ceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEEE
Confidence            577889999999999999997 4799999998742211 11122346789999999999999999999998764  4588


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      +||||+++++|.+++..  ...+++.....++.|++.||.|||   +.+++||||||+||+++.++.++++|||+++...
T Consensus        83 ~v~e~~~~~~L~~~~~~--~~~l~~~~~~~~~~~i~~al~~LH---~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~  157 (264)
T cd06653          83 IFVEYMPGGSIKDQLKA--YGALTENVTRRYTRQILQGVSYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGASKRIQ  157 (264)
T ss_pred             EEEEeCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCEEECccccccccc
Confidence            99999999999999875  345889999999999999999999   7889999999999999999999999999998653


Q ss_pred             CCCC-CCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296          712 PSKS-TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       712 ~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                      .... ........|+..|+|||++.+..++.++|||||||++|||++|+.||.+......... .... . ....    +
T Consensus       158 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~-~~~~-~-~~~~----~  230 (264)
T cd06653         158 TICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYEAMAAIFK-IATQ-P-TKPM----L  230 (264)
T ss_pred             cccccCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCccCHHHHHHH-HHcC-C-CCCC----C
Confidence            2111 1112345689999999999888899999999999999999999999975433222111 1111 0 0000    1


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                            +.....++.+++.+|++ +|.+||++.+++.|
T Consensus       231 ------p~~~~~~~~~~i~~~l~-~~~~r~~~~~~~~~  261 (264)
T cd06653         231 ------PDGVSDACRDFLKQIFV-EEKRRPTAEFLLRH  261 (264)
T ss_pred             ------CcccCHHHHHHHHHHhc-CcccCccHHHHhcC
Confidence                  11234567899999999 57999999998875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=100.00  E-value=1.2e-35  Score=311.72  Aligned_cols=248  Identities=21%  Similarity=0.251  Sum_probs=196.0

Q ss_pred             cccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCCCCC
Q 003296          563 ELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGT  641 (833)
Q Consensus       563 ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~g~  641 (833)
                      +|+|+||.||+|+.. +|+.||+|.+... ........+.+.+|++++++++||||+++++.+..++..|+||||+++|+
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKA-DMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGD   79 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecch-hhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCc
Confidence            689999999999986 5999999998422 22222345789999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC------
Q 003296          642 LFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS------  715 (833)
Q Consensus       642 L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~------  715 (833)
                      |.++++..  ..+++..+..++.|+++||+|||   ..+++||||+|+||++++++.+|++|||++........      
T Consensus        80 L~~~l~~~--~~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~  154 (265)
T cd05579          80 LASLLENV--GSLDEDVARIYIAEIVLALEYLH---SNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDD  154 (265)
T ss_pred             HHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH---HcCeecCCCCHHHeEEcCCCCEEEEecccchhcccCcccccccc
Confidence            99999863  36899999999999999999999   78999999999999999999999999999876533211      


Q ss_pred             CCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCch
Q 003296          716 TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSL  795 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  795 (833)
                      ........++..|+|||+.....++.++|||||||++||+++|+.||..... .......... . .    .  ...   
T Consensus       155 ~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~-~~~~~~~~~~-~-~----~--~~~---  222 (265)
T cd05579         155 EKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETP-EEIFQNILNG-K-I----E--WPE---  222 (265)
T ss_pred             cccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHhcC-C-c----C--CCc---
Confidence            0122345688999999999888889999999999999999999999975432 2222111110 0 0    0  000   


Q ss_pred             hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Q 003296          796 AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML  829 (833)
Q Consensus       796 ~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L  829 (833)
                       ....+..+.+++.+|++.+|++|||+.+|.+.|
T Consensus       223 -~~~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l  255 (265)
T cd05579         223 -DVEVSDEAIDLISKLLVPDPEKRLGAKSIEEIK  255 (265)
T ss_pred             -cccCCHHHHHHHHHHhcCCHhhcCCCccHHHHh
Confidence             001245778999999999999999994444433

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=100.00  E-value=2.8e-35  Score=316.58  Aligned_cols=247  Identities=22%  Similarity=0.287  Sum_probs=194.9

Q ss_pred             cCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      |...+.+|+|+||+||+|+. .+|..||+|++..... ......+.+.+|++++++++|||++++++++.+.+..|+|||
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  101 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGK-QTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVME  101 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEecccc-CchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEe
Confidence            55667899999999999997 4789999999853221 111223578899999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      |+. |++.+++... ...++|.++..++.|++.|++|||   ..+|+||||||+||+++.++.+|++|||++.....   
T Consensus       102 ~~~-~~l~~~l~~~-~~~l~~~~~~~~~~qi~~al~~LH---~~gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~~---  173 (313)
T cd06633         102 YCL-GSASDLLEVH-KKPLQEVEIAAITHGALQGLAYLH---SHNMIHRDIKAGNILLTEPGQVKLADFGSASKSSP---  173 (313)
T ss_pred             cCC-CCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCChhhEEECCCCCEEEeecCCCcccCC---
Confidence            996 5888887643 346899999999999999999999   78899999999999999999999999998864321   


Q ss_pred             CCcccccccccccccccccc---CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          716 TGSLSTVAGSVGYIPPEYAY---TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                         .....|+..|+|||++.   ...++.++|||||||++|||++|+.||.......... ..... . ....     . 
T Consensus       174 ---~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~~~~~~~-~~~~~-~-~~~~-----~-  241 (313)
T cd06633         174 ---ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALY-HIAQN-D-SPTL-----Q-  241 (313)
T ss_pred             ---CCCccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCChHHHHH-HHHhc-C-CCCC-----C-
Confidence               13457899999999974   3568899999999999999999999997554322211 11111 0 0000     0 


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                          .......+.+++.+||+.+|.+||++.|++.+
T Consensus       242 ----~~~~~~~l~~li~~~l~~~P~~Rp~~~~~l~~  273 (313)
T cd06633         242 ----SNEWTDSFRGFVDYCLQKIPQERPASAELLRH  273 (313)
T ss_pred             ----ccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                01122357789999999999999999999875

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>PHA03210 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=6.7e-36  Score=339.75  Aligned_cols=272  Identities=13%  Similarity=0.169  Sum_probs=189.1

Q ss_pred             HHHHhcCCccccccCcccEEEEEEcC--CCceEEEEEcc-------------ccchhhhccChhHHHHHHHHHhcCCCCC
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVMP--SGMSYFIKKLN-------------WSDKIFQLGSHHKFDKELEVLGKLSNSN  616 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~~--~~~~vavK~~~-------------~~~~~~~~~~~~~~~~E~~~l~~l~H~n  616 (833)
                      ...+.|+..+.||+|+||+||+|..+  ++..+++|.+.             .+...........|.+|+++|++++|||
T Consensus       145 ~~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~Hpn  224 (501)
T PHA03210        145 EFLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHEN  224 (501)
T ss_pred             hhhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCC
Confidence            34578999999999999999998753  23333333110             0000001112456889999999999999


Q ss_pred             cccceEEEecCCceEEEEeeCCCCChhhhhhcCC---CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee
Q 003296          617 VMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCL---ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL  693 (833)
Q Consensus       617 iv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~---~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill  693 (833)
                      ||++++++..++..|+|+||+. ++|.+++....   .......+...|+.|++.||+|||   +.+||||||||+|||+
T Consensus       225 Iv~l~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH---~~gIiHrDLKP~NILl  300 (501)
T PHA03210        225 ILKIEEILRSEANTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIH---DKKLIHRDIKLENIFL  300 (501)
T ss_pred             cCcEeEEEEECCeeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEE
Confidence            9999999999999999999995 58888775421   112334567789999999999999   7899999999999999


Q ss_pred             CCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCc-ccCCc-c-HHH
Q 003296          694 KSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTA-VNQGN-E-LAK  770 (833)
Q Consensus       694 ~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p-~~~~~-~-~~~  770 (833)
                      +.++.+||+|||+++........ .....+||+.|+|||++.+..++.++|||||||++|||++|..+ +.... . ..+
T Consensus       301 ~~~~~vkL~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~~~  379 (501)
T PHA03210        301 NCDGKIVLGDFGTAMPFEKEREA-FDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQ  379 (501)
T ss_pred             CCCCCEEEEeCCCceecCccccc-ccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCCCCHHHH
Confidence            99999999999999876533221 22346799999999999998999999999999999999998854 43221 1 111


Q ss_pred             HHHHhhcc---ccccc-------ccccc-cccCCchhHH------HHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          771 WVLRNSAQ---QDKLD-------HILDF-NVSRTSLAVR------SQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       771 ~~~~~~~~---~~~~~-------~~~~~-~~~~~~~~~~------~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ........   .+...       ..++. .+........      .....+.+++.+|++.||++|||+.|++.+
T Consensus       380 ~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~~DP~~Rpsa~elL~h  454 (501)
T PHA03210        380 LLKIIDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLTFDWHLRPGAAELLAL  454 (501)
T ss_pred             HHHHHHhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhccCcccCcCHHHHhhC
Confidence            11110000   00000       00000 0000000000      112356778999999999999999999875

>PHA02882 putative serine/threonine kinase; Provisional

Probab=100.00  E-value=1.1e-35  Score=316.70  Aligned_cols=262  Identities=11%  Similarity=0.055  Sum_probs=186.5

Q ss_pred             HhcCCccccccCcccEEEEEEcCC----CceEEEEEccccchhhh-------ccChhHHHHHHHHHhcCCCCCcccceEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPS----GMSYFIKKLNWSDKIFQ-------LGSHHKFDKELEVLGKLSNSNVMTPLAY  623 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~----~~~vavK~~~~~~~~~~-------~~~~~~~~~E~~~l~~l~H~niv~~~~~  623 (833)
                      ..|...+.||+|+||.||+|...+    +..+|+|+.........       .........+...+..++|+||++++++
T Consensus        12 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~   91 (294)
T PHA02882         12 KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGC   91 (294)
T ss_pred             CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEe
Confidence            467888999999999999999753    45666665421111000       0011223445556777899999999998


Q ss_pred             EecCC----ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCc
Q 003296          624 VLASD----SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEP  699 (833)
Q Consensus       624 ~~~~~----~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~  699 (833)
                      +....    ..++++|++.. ++.+.+..  ....++..+..|+.|+++||+|||   +.+|+||||||+|||++.++.+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~i~~qi~~~l~~lH---~~~iiHrDiKp~Nill~~~~~~  165 (294)
T PHA02882         92 GSFKRCRMYYRFILLEKLVE-NTKEIFKR--IKCKNKKLIKNIMKDMLTTLEYIH---EHGISHGDIKPENIMVDGNNRG  165 (294)
T ss_pred             eeEecCCceEEEEEEehhcc-CHHHHHHh--hccCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCcE
Confidence            76543    34788888754 67666654  223578889999999999999999   7899999999999999999999


Q ss_pred             eeccceeeeeeCCCCCC-----CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHH
Q 003296          700 QIGDIELCKVIDPSKST-----GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLR  774 (833)
Q Consensus       700 ki~dfgl~~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~  774 (833)
                      |++|||+|+........     .......||+.|+|||+..+..++.++|||||||++|||++|+.||.+.......+..
T Consensus       166 ~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~~  245 (294)
T PHA02882        166 YIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIHA  245 (294)
T ss_pred             EEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHHHH
Confidence            99999999876432211     1112357999999999999989999999999999999999999999754322221111


Q ss_pred             hhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Q 003296          775 NSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML  829 (833)
Q Consensus       775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L  829 (833)
                      ...  +....+......     ....+.++.+++..|++.+|++||+++++.+.+
T Consensus       246 ~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~~~  293 (294)
T PHA02882        246 AKC--DFIKRLHEGKIK-----IKNANKFIYDFIECVTKLSYEEKPDYDALIKIF  293 (294)
T ss_pred             hHH--HHHHHhhhhhhc-----cCCCCHHHHHHHHHHHhCCCCCCCCHHHHHHhh
Confidence            100  001111111110     012245688999999999999999999999876

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=100.00  E-value=3.3e-35  Score=312.40  Aligned_cols=264  Identities=20%  Similarity=0.251  Sum_probs=199.6

Q ss_pred             cCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC--CceEEE
Q 003296          557 ANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS--DSAYLF  633 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~--~~~~lv  633 (833)
                      |+..+.||+|+||.||+|+.. +|+.||||++....  ......+.+.+|++++++++|||++++++++...  +..++|
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~--~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv   78 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMEN--EKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMV   78 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEeccc--ccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEE
Confidence            456788999999999999975 68999999995322  1223346789999999999999999999999988  889999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++ +|.+++... ...+++..+..++.|+++||+|||   ..+++|+||||+||++++++.+|++|||++......
T Consensus        79 ~e~~~~-~l~~~~~~~-~~~~~~~~~~~i~~~i~~al~~LH---~~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~  153 (287)
T cd07840          79 FEYMDH-DLTGLLDSP-EVKFTESQIKCYMKQLLEGLQYLH---SNGILHRDIKGSNILINNDGVLKLADFGLARPYTKR  153 (287)
T ss_pred             eccccc-cHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCcHHHeEEcCCCCEEEccccceeeccCC
Confidence            999975 999988753 246899999999999999999999   778999999999999999999999999999876543


Q ss_pred             CCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhh--cc--ccccccccc-
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNS--AQ--QDKLDHILD-  787 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~--~~--~~~~~~~~~-  787 (833)
                      ... ......++..|+|||.+.+ ..++.++|||||||++|||+||+.||..............  ..  ........+ 
T Consensus       154 ~~~-~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (287)
T cd07840         154 NSA-DYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTELEQLEKIFELCGSPTDENWPGVSKL  232 (287)
T ss_pred             Ccc-cccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchhhccccccc
Confidence            211 1233567889999997764 4578999999999999999999999976543322111100  00  000000000 


Q ss_pred             ---ccccC--C----c-hhHHH-HHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          788 ---FNVSR--T----S-LAVRS-QMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       788 ---~~~~~--~----~-~~~~~-~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                         .....  .    . ..... .+.++.+++.+||+.+|++||+++|++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~  284 (287)
T cd07840         233 PWFENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQH  284 (287)
T ss_pred             hhhhhccccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence               00000  0    0 00011 15678899999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.6e-35  Score=305.98  Aligned_cols=249  Identities=20%  Similarity=0.305  Sum_probs=203.1

Q ss_pred             cCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      |+..+.||+|++|.||+|... +++.||+|.+.....  .....+.+.+|++++++++|||++++++++..++..++|||
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e   79 (254)
T cd06627           2 YQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKI--KEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILE   79 (254)
T ss_pred             ceeeeEEcccCCeEEEEEEEcCCCcEEEEEEeccccc--CHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEe
Confidence            667789999999999999875 788999999953321  11235689999999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      |+++++|.+++...  ..++|..+..++.|++.|+.|||   +.+|+||||||+||+++.++.+|++|||++........
T Consensus        80 ~~~~~~L~~~~~~~--~~l~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~  154 (254)
T cd06627          80 YAENGSLRQIIKKF--GPFPESLVAVYVYQVLQGLAYLH---EQGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSK  154 (254)
T ss_pred             cCCCCcHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCHHHEEECCCCCEEEeccccceecCCCcc
Confidence            99999999999763  56899999999999999999999   78999999999999999999999999999987754332


Q ss_pred             CCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCch
Q 003296          716 TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSL  795 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  795 (833)
                      .  .....|+..|+|||+..+..++.++||||+|+++|||++|+.||................   ..     ...    
T Consensus       155 ~--~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~---~~-----~~~----  220 (254)
T cd06627         155 D--DASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNPMAALFRIVQDD---HP-----PLP----  220 (254)
T ss_pred             c--ccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHhccC---CC-----CCC----
Confidence            1  234578999999999887778999999999999999999999997544332222111100   00     010    


Q ss_pred             hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          796 AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       796 ~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        ...+..+.+++.+||+.+|++|||+.|++.+
T Consensus       221 --~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~~  251 (254)
T cd06627         221 --EGISPELKDFLMQCFQKDPNLRPTAKQLLKH  251 (254)
T ss_pred             --CCCCHHHHHHHHHHHhCChhhCcCHHHHhcC
Confidence              1224567799999999999999999999863

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=1e-36  Score=314.72  Aligned_cols=247  Identities=16%  Similarity=0.246  Sum_probs=208.7

Q ss_pred             ccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCC
Q 003296          560 LNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       560 ~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~  638 (833)
                      .+++|+|.||+||-|+. ++|+.||||.+. +.+ ...+.....++|++||++++||.||.+...|+..+..+.|||-+ 
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvId-Klr-Fp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl-  645 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVID-KLR-FPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKL-  645 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeee-ccc-CCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhh-
Confidence            47999999999999996 589999999994 322 23344578899999999999999999999999999999999999 


Q ss_pred             CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC---CCceeccceeeeeeCCCCC
Q 003296          639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL---KEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~---~~~ki~dfgl~~~~~~~~~  715 (833)
                      +||..+.+-...++.+++...+.++.||+.||.|||   ..+|+|+|+||+|||+.+.   -++|++|||+|+++.+...
T Consensus       646 ~GDMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH---~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEksF  722 (888)
T KOG4236|consen  646 HGDMLEMILSSEKGRLPERITKFLVTQILVALRYLH---FKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKSF  722 (888)
T ss_pred             cchHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhh---hcceeeccCCchheeeccCCCCCceeeccccceeecchhhh
Confidence            568888776655678999999999999999999999   7899999999999999643   3789999999999875543


Q ss_pred             CCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCch
Q 003296          716 TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSL  795 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  795 (833)
                      .   .+++|||.|.|||++....|...-|+||.|||+|--++|..||.++.++.+.+.             +..+..++.
T Consensus       723 R---rsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdEdIndQIQ-------------NAaFMyPp~  786 (888)
T KOG4236|consen  723 R---RSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDEDINDQIQ-------------NAAFMYPPN  786 (888)
T ss_pred             h---hhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCccchhHHhh-------------ccccccCCC
Confidence            2   468999999999999999999999999999999999999999987766544332             112223344


Q ss_pred             hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          796 AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       796 ~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .+.+....++++|...|+..=.+|-|....+.|
T Consensus       787 PW~eis~~AidlIn~LLqVkm~kRysvdk~lsh  819 (888)
T KOG4236|consen  787 PWSEISPEAIDLINNLLQVKMRKRYSVDKSLSH  819 (888)
T ss_pred             chhhcCHHHHHHHHHHHHHHHHHhcchHhhccc
Confidence            566778889999999999999999999887654

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=100.00  E-value=4.4e-35  Score=307.47  Aligned_cols=242  Identities=19%  Similarity=0.257  Sum_probs=189.7

Q ss_pred             HHHHhcCCcccc--ccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecC
Q 003296          552 AMEAVANPLNVE--LKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLAS  627 (833)
Q Consensus       552 ~~~~~~~~~~~i--g~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~  627 (833)
                      ...+.|+..+.+  |+|+||.||++.. .+|..+|+|.......       ...  |+.+...+ +||||++++++|..+
T Consensus        11 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~-------~~~--e~~~~~~~~~h~~iv~~~~~~~~~   81 (267)
T PHA03390         11 QFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNF-------NAI--EPMVHQLMKDNPNFIKLYYSVTTL   81 (267)
T ss_pred             HHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhc-------chh--hHHHHHHhhcCCCEEEEEEEEecC
Confidence            344667777776  9999999999997 4788999999842110       111  22222222 699999999999999


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC-Cceecccee
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK-EPQIGDIEL  706 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~-~~ki~dfgl  706 (833)
                      +..|+||||+++|+|.+++...  ..++|.++..++.|+++|+.|||   +.+++||||||+||+++.++ .++++|||+
T Consensus        82 ~~~~iv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~~l~dfg~  156 (267)
T PHA03390         82 KGHVLIMDYIKDGDLFDLLKKE--GKLSEAEVKKIIRQLVEALNDLH---KHNIIHNDIKLENVLYDRAKDRIYLCDYGL  156 (267)
T ss_pred             CeeEEEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEEeCCCCeEEEecCcc
Confidence            9999999999999999999863  37999999999999999999999   78899999999999999988 999999999


Q ss_pred             eeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccH----HHHHHHhhcccccc
Q 003296          707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNEL----AKWVLRNSAQQDKL  782 (833)
Q Consensus       707 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~----~~~~~~~~~~~~~~  782 (833)
                      ++.....      ....|+..|+|||++.+..++.++|||||||++|||++|+.||......    ..+....   ..  
T Consensus       157 ~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~---~~--  225 (267)
T PHA03390        157 CKIIGTP------SCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQ---QK--  225 (267)
T ss_pred             ceecCCC------ccCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcchhhHHHHHHhh---cc--
Confidence            8865422      2346899999999999888999999999999999999999999743221    1111111   00  


Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCC-HHHHHHH
Q 003296          783 DHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPK-MKSVLRM  828 (833)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps-~~evl~~  828 (833)
                            ..    .........+.+++.+||+.||.+||+ ++|+++|
T Consensus       226 ------~~----~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~l~h  262 (267)
T PHA03390        226 ------KL----PFIKNVSKNANDFVQSMLKYNINYRLTNYNEIIKH  262 (267)
T ss_pred             ------cC----CcccccCHHHHHHHHHHhccChhhCCchHHHHhcC
Confidence                  00    011134457889999999999999996 6998864

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=100.00  E-value=1.4e-35  Score=313.92  Aligned_cols=252  Identities=21%  Similarity=0.301  Sum_probs=202.5

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCCceEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~~~~lv  633 (833)
                      +|...+.||+|+||.||+|+.. +|+.||+|++... ........+.+.+|++++++++ ||||+++++++...+..++|
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv   80 (280)
T cd05581           2 DFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKR-QLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFV   80 (280)
T ss_pred             CceEeeeecCCCceEEEEEEEcCCCCEEEEEEechH-hccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEE
Confidence            5677889999999999999975 7999999998432 2222233467899999999999 99999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++.+  ...++|..+..++.|++.||+|||   +.+++|+||||+||+++.++.++++|||++......
T Consensus        81 ~e~~~~~~L~~~l~~--~~~l~~~~~~~i~~ql~~~l~~Lh---~~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~  155 (280)
T cd05581          81 LEYAPNGELLQYIRK--YGSLDEKCTRFYAAEILLALEYLH---SKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPN  155 (280)
T ss_pred             EcCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHeEECCCCCEEecCCccccccCCc
Confidence            999999999999986  346999999999999999999999   789999999999999999999999999998865432


Q ss_pred             CCC------------------CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHh
Q 003296          714 KST------------------GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRN  775 (833)
Q Consensus       714 ~~~------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~  775 (833)
                      ...                  .......|+..|+|||+.....++.++|||||||++||+++|+.||........ ....
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~-~~~~  234 (280)
T cd05581         156 SSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNEYLT-FQKI  234 (280)
T ss_pred             cccccCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCccHHHH-HHHH
Confidence            210                  112235688999999998888899999999999999999999999975442211 1111


Q ss_pred             hcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCH----HHHHHH
Q 003296          776 SAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKM----KSVLRM  828 (833)
Q Consensus       776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~----~evl~~  828 (833)
                      ...        ....+      ......+.+++.+||+.+|++||++    +|++++
T Consensus       235 ~~~--------~~~~~------~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~ll~~  277 (280)
T cd05581         235 LKL--------EYSFP------PNFPPDAKDLIEKLLVLDPQDRLGVNEGYDELKAH  277 (280)
T ss_pred             Hhc--------CCCCC------CccCHHHHHHHHHHhcCCHhhCCCcccCHHHHhcC
Confidence            100        00000      1124567899999999999999999    888764

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.2e-35  Score=323.52  Aligned_cols=260  Identities=18%  Similarity=0.188  Sum_probs=194.9

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC----
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD----  628 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~----  628 (833)
                      .+.|...+.||+|+||.||+|+. .+|+.||||++....  ......+.+.+|++++++++||||++++++|....    
T Consensus        14 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~   91 (342)
T cd07879          14 PERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPF--QSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDE   91 (342)
T ss_pred             ccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCcc--ccccchhHHHHHHHHHHhcCCCCccchhheecccccCCC
Confidence            35677889999999999999996 479999999984321  11223456889999999999999999999987543    


Q ss_pred             --ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceecccee
Q 003296          629 --SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIEL  706 (833)
Q Consensus       629 --~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl  706 (833)
                        ..++|+||+.. +|.++..    ..+++..+..++.|+++||+|||   ..+|+||||||+||+++.++.+|++|||+
T Consensus        92 ~~~~~lv~e~~~~-~l~~~~~----~~~~~~~~~~~~~qi~~aL~~LH---~~~i~H~dlkp~NIll~~~~~~kL~dfg~  163 (342)
T cd07879          92 FQDFYLVMPYMQT-DLQKIMG----HPLSEDKVQYLVYQMLCGLKYIH---SAGIIHRDLKPGNLAVNEDCELKILDFGL  163 (342)
T ss_pred             CceEEEEeccccc-CHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEeeCCC
Confidence              46999999964 7777653    35899999999999999999999   78899999999999999999999999999


Q ss_pred             eeeeCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccc---
Q 003296          707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL---  782 (833)
Q Consensus       707 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~---  782 (833)
                      ++.....     .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+......+.......+...   
T Consensus       164 ~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  238 (342)
T cd07879         164 ARHADAE-----MTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGPEF  238 (342)
T ss_pred             CcCCCCC-----CCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHH
Confidence            8764321     134578899999999876 4688999999999999999999999986543322211111000000   


Q ss_pred             ---------ccccc--ccccCCc--hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          783 ---------DHILD--FNVSRTS--LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       783 ---------~~~~~--~~~~~~~--~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                               .....  +......  ........++.+++.+||+.||++||+++|++.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~h  297 (342)
T cd07879         239 VQKLEDKAAKSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALEH  297 (342)
T ss_pred             HHHhcccchHHHHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence                     00000  0000000  0001123467899999999999999999999976

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=100.00  E-value=2.8e-35  Score=320.07  Aligned_cols=264  Identities=19%  Similarity=0.197  Sum_probs=196.2

Q ss_pred             CccccccCcccEEEEEEcC-CCceEEEEEccccchhhh----------ccChhHHHHHHHHHhcCCCCCcccceEEEecC
Q 003296          559 PLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQ----------LGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS  627 (833)
Q Consensus       559 ~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~----------~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~  627 (833)
                      ..+.||+|+||.||+|+.. +|+.||||++........          ......+.+|++++++++||||+++++++..+
T Consensus        13 ~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   92 (335)
T PTZ00024         13 KGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVEG   92 (335)
T ss_pred             hhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEecC
Confidence            3468999999999999974 799999999843211110          01123578999999999999999999999999


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                      +..++||||++ |+|.+++..  ...+++.....++.|++.||+|||   ..+|+||||||+||+++.++.+|++|||++
T Consensus        93 ~~~~lv~e~~~-~~l~~~l~~--~~~~~~~~~~~~~~ql~~aL~~LH---~~~i~H~dl~~~nill~~~~~~kl~dfg~~  166 (335)
T PTZ00024         93 DFINLVMDIMA-SDLKKVVDR--KIRLTESQVKCILLQILNGLNVLH---KWYFMHRDLSPANIFINSKGICKIADFGLA  166 (335)
T ss_pred             CcEEEEEeccc-cCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCeecccccHHHeEECCCCCEEECCccce
Confidence            99999999997 699999875  345889999999999999999999   789999999999999999999999999999


Q ss_pred             eeeCCCC------------CCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHH
Q 003296          708 KVIDPSK------------STGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLR  774 (833)
Q Consensus       708 ~~~~~~~------------~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~  774 (833)
                      +......            .........+++.|+|||++.+. .++.++|||||||++|||++|+.||............
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~i  246 (335)
T PTZ00024        167 RRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEIDQLGRI  246 (335)
T ss_pred             eecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence            8654111            01112234578899999998764 4789999999999999999999999865543322111


Q ss_pred             hhccccccc----ccc--------cccccCC-chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          775 NSAQQDKLD----HIL--------DFNVSRT-SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       775 ~~~~~~~~~----~~~--------~~~~~~~-~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .........    ...        ....... .........++.+++.+|++.||++|||++|++.+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~~  313 (335)
T PTZ00024        247 FELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALKH  313 (335)
T ss_pred             HHHhCCCchhhCcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhcC
Confidence            110000000    000        0000000 00011224568899999999999999999999875

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=100.00  E-value=2.2e-35  Score=317.70  Aligned_cols=268  Identities=20%  Similarity=0.225  Sum_probs=197.1

Q ss_pred             HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC----
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD----  628 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~----  628 (833)
                      .++|...+.||+|+||.||+|+.. +|+.||||++....  ........+.+|++++++++||||+++++++....    
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   84 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHN--EKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSK   84 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEecc--CCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccc
Confidence            457888899999999999999974 78999999984221  11222346789999999999999999999886543    


Q ss_pred             ----ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccc
Q 003296          629 ----SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDI  704 (833)
Q Consensus       629 ----~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~df  704 (833)
                          ..++||||+++ ++.+.+... ...+++.++..++.|+++||+|||   +.+|+||||||+||++++++.+|++||
T Consensus        85 ~~~~~~~lv~~~~~~-~l~~~~~~~-~~~~~~~~~~~i~~~l~~al~~lH---~~~i~H~dl~p~nil~~~~~~~~l~df  159 (311)
T cd07866          85 RKRGSVYMVTPYMDH-DLSGLLENP-SVKLTESQIKCYMLQLLEGINYLH---ENHILHRDIKAANILIDNQGILKIADF  159 (311)
T ss_pred             ccCceEEEEEecCCc-CHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEECcC
Confidence                46999999975 787777643 346999999999999999999999   789999999999999999999999999


Q ss_pred             eeeeeeCCCCCC---------CccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHH
Q 003296          705 ELCKVIDPSKST---------GSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLR  774 (833)
Q Consensus       705 gl~~~~~~~~~~---------~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~  774 (833)
                      |+++........         .......|++.|+|||++.+. .++.++|||||||++|||++|++||.+..........
T Consensus       160 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~~~~~~  239 (311)
T cd07866         160 GLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLI  239 (311)
T ss_pred             ccchhccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence            999765432211         111335678999999987654 5889999999999999999999999765443221110


Q ss_pred             hh--ccc--------ccccccc----cccccCC-chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          775 NS--AQQ--------DKLDHIL----DFNVSRT-SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       775 ~~--~~~--------~~~~~~~----~~~~~~~-~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ..  ...        .......    ....... ..........+.+++.+|++.||++|||+.|++.+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~~  308 (311)
T cd07866         240 FKLCGTPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALEH  308 (311)
T ss_pred             HHHhCCCChhhchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhcC
Confidence            00  000        0000000    0000000 00011223568899999999999999999999864

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=100.00  E-value=2.6e-35  Score=307.54  Aligned_cols=249  Identities=20%  Similarity=0.279  Sum_probs=202.3

Q ss_pred             cCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      |+..+.||+|+||.||++.. .+|+.+|+|++.....  ......++.+|++++++++||||+++++++......++|||
T Consensus         2 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e   79 (256)
T cd08530           2 FKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSM--SQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVME   79 (256)
T ss_pred             ceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhc--cHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEeh
Confidence            66778999999999999986 4789999999842211  12235678899999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCC--CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          636 YAPKGTLFDVLHGCL--ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       636 y~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |+++++|.+++....  ...+++..++.++.|++.||+|||   +.+++||||||+||+++.++.+|++|||+++.....
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh---~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~  156 (256)
T cd08530          80 YAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALH---EQKILHRDLKSANILLVANDLVKIGDLGISKVLKKN  156 (256)
T ss_pred             hcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCcceEEEecCCcEEEeeccchhhhccC
Confidence            999999999987522  246899999999999999999999   789999999999999999999999999999876543


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      .    .....|++.|+|||+..+..++.++|+||+|+++|||++|+.||...... ...... .. ...        ...
T Consensus       157 ~----~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~-~~~~~~-~~-~~~--------~~~  221 (256)
T cd08530         157 M----AKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQ-DLRYKV-QR-GKY--------PPI  221 (256)
T ss_pred             C----cccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHH-hc-CCC--------CCC
Confidence            1    12356889999999998888999999999999999999999999754321 111111 00 010        000


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                         ......++.+++.+|++.+|++||++.|++++
T Consensus       222 ---~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~  253 (256)
T cd08530         222 ---PPIYSQDLQNFIRSMLQVKPKLRPNCDKILAS  253 (256)
T ss_pred             ---chhhCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence               11345678899999999999999999999875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=100.00  E-value=1.8e-35  Score=319.75  Aligned_cols=263  Identities=17%  Similarity=0.222  Sum_probs=198.7

Q ss_pred             HHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec-CCc
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA-SDS  629 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~-~~~  629 (833)
                      .+++.|...+.||+|+||.||+|... +|..||||++....  ......+.+.+|++++++++|||||+++++|.. ...
T Consensus         7 ~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~   84 (328)
T cd07856           7 EITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPF--STPVLAKRTYRELKLLKHLRHENIISLSDIFISPLED   84 (328)
T ss_pred             ccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccc--cccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCc
Confidence            45677888999999999999999964 89999999984221  122335678899999999999999999999876 467


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                      .++||||+ +++|.++++.   ..+++.....++.|+++||+|||   ..+|+||||||+||++++++.+|++|||.+..
T Consensus        85 ~~lv~e~~-~~~L~~~~~~---~~~~~~~~~~~~~ql~~aL~~LH---~~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~  157 (328)
T cd07856          85 IYFVTELL-GTDLHRLLTS---RPLEKQFIQYFLYQILRGLKYVH---SAGVVHRDLKPSNILINENCDLKICDFGLARI  157 (328)
T ss_pred             EEEEeehh-ccCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEeECCCCCEEeCccccccc
Confidence            89999999 5699988874   35788888899999999999999   78899999999999999999999999999875


Q ss_pred             eCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccc----c
Q 003296          710 IDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLD----H  784 (833)
Q Consensus       710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~----~  784 (833)
                      ....     .....++..|+|||++.+ ..++.++|||||||++|||+||+.||........+.......+....    .
T Consensus       158 ~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (328)
T cd07856         158 QDPQ-----MTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINT  232 (328)
T ss_pred             cCCC-----cCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHh
Confidence            4322     134567899999998765 56899999999999999999999999754432211110000000000    0


Q ss_pred             ccc---------ccccCCch---hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          785 ILD---------FNVSRTSL---AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       785 ~~~---------~~~~~~~~---~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ..+         .......+   .......++.+++.+|++.+|++|||+.|++.+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~~  288 (328)
T cd07856         233 ICSENTLRFVQSLPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALAH  288 (328)
T ss_pred             ccchhhHHHHhhccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            000         00000000   001124578899999999999999999999875

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=100.00  E-value=3.2e-35  Score=319.11  Aligned_cols=264  Identities=21%  Similarity=0.233  Sum_probs=201.9

Q ss_pred             cCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC-----ce
Q 003296          557 ANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD-----SA  630 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~-----~~  630 (833)
                      |+..+.||+|+||.||+|... +|+.||||++....  ......+.+.+|++++++++||||+++++++...+     ..
T Consensus         2 y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~--~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~   79 (330)
T cd07834           2 YELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVF--DDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDV   79 (330)
T ss_pred             ceeeeeecCCCCeEEEEEEeCCCCcEEEEEeecccc--ccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccce
Confidence            667789999999999999975 59999999985321  11234568999999999999999999999998775     78


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      |+||||++ ++|.++++.  ...+++..+..++.|++.||+|||   ..+|+||||||+||+++.++.++++|||++...
T Consensus        80 ~lv~e~~~-~~l~~~l~~--~~~l~~~~~~~i~~~l~~~l~~LH---~~gi~H~dlkp~nili~~~~~~~L~dfg~~~~~  153 (330)
T cd07834          80 YIVTELME-TDLHKVIKS--PQPLTDDHIQYFLYQILRGLKYLH---SANVIHRDLKPSNILVNSNCDLKICDFGLARGV  153 (330)
T ss_pred             EEEecchh-hhHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEcccCceEee
Confidence            99999998 589999875  337999999999999999999999   789999999999999999999999999999876


Q ss_pred             CCCCCC-CccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccc----
Q 003296          711 DPSKST-GSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDH----  784 (833)
Q Consensus       711 ~~~~~~-~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~----  784 (833)
                      ...... .......||..|+|||++.+. .++.++|||||||++|||++|+.||.+..............+.....    
T Consensus       154 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~  233 (330)
T cd07834         154 DPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPSEEDLKF  233 (330)
T ss_pred             cccccccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHhcCCCChhHhhh
Confidence            543210 122345789999999999877 78999999999999999999999997554322111110000000000    


Q ss_pred             --------cccc-cccCC---chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          785 --------ILDF-NVSRT---SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       785 --------~~~~-~~~~~---~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                              .+.. .....   ..........+.+++.+||+.||++|||++|++.+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~  289 (330)
T cd07834         234 ITSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAH  289 (330)
T ss_pred             ccccchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence                    0000 00000   00011234578899999999999999999999985

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=100.00  E-value=2.6e-35  Score=321.04  Aligned_cols=263  Identities=17%  Similarity=0.220  Sum_probs=197.0

Q ss_pred             HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC---
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS---  627 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~---  627 (833)
                      .+++.|...+.||+|+||.||+|.. .+|+.||||++.....  .....+.+.+|++++++++|||||++++++...   
T Consensus        14 ~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~~~   91 (345)
T cd07877          14 EVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQ--SIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSL   91 (345)
T ss_pred             hccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcch--hhHHHHHHHHHHHHHHHcCCCcccceeeeeeecccc
Confidence            5667888899999999999999986 5799999999843211  112345788999999999999999999988643   


Q ss_pred             ---CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccc
Q 003296          628 ---DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDI  704 (833)
Q Consensus       628 ---~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~df  704 (833)
                         ...|+++|++ +++|.+++..   ..++|..+..++.|+++||+|||   +.+|+||||||+||++++++.+|++||
T Consensus        92 ~~~~~~~lv~~~~-~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIll~~~~~~kl~df  164 (345)
T cd07877          92 EEFNDVYLVTHLM-GADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDF  164 (345)
T ss_pred             cccccEEEEehhc-ccCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChHHEEEcCCCCEEEecc
Confidence               3478888887 7899988864   35899999999999999999999   788999999999999999999999999


Q ss_pred             eeeeeeCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccc
Q 003296          705 ELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLD  783 (833)
Q Consensus       705 gl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~  783 (833)
                      |+++.....     .....||..|+|||++.+ ..++.++|||||||++|||++|+.||.....................
T Consensus       165 g~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~  239 (345)
T cd07877         165 GLARHTDDE-----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGA  239 (345)
T ss_pred             ccccccccc-----ccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCH
Confidence            998764321     134578999999998765 46889999999999999999999999754332211110000000000


Q ss_pred             ccc----cc----------cccCCch--hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          784 HIL----DF----------NVSRTSL--AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       784 ~~~----~~----------~~~~~~~--~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .+.    +.          .......  .......++.+++.+|++.||++||++.|++.+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h  300 (345)
T cd07877         240 ELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH  300 (345)
T ss_pred             HHHhhcccHhHHHHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHHHHhcC
Confidence            000    00          0000000  000124467899999999999999999999865

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=100.00  E-value=5.3e-35  Score=305.38  Aligned_cols=251  Identities=22%  Similarity=0.311  Sum_probs=203.7

Q ss_pred             cCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      |+..+.||+|+||.||++... ++..||+|++....  ......+.+.+|++++++++|||++++++.+...+..++|+|
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e   79 (258)
T cd08215           2 YEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSN--MSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVME   79 (258)
T ss_pred             ceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeeccc--CChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEE
Confidence            667789999999999999975 78999999984321  112345678999999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCC--CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          636 YAPKGTLFDVLHGCL--ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       636 y~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |+++++|.+++....  ...+++.++..++.+++.|++|||   ..+++|+||+|+||+++.++.++++|||++......
T Consensus        80 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh---~~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~  156 (258)
T cd08215          80 YADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLH---SRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSST  156 (258)
T ss_pred             ecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHH---hCCEecccCChHHeEEcCCCcEEECCccceeecccC
Confidence            999999999998643  357999999999999999999999   779999999999999999999999999999876433


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      ..  ......|++.|+|||...+..++.++||||+|+++|||++|+.||.... ..+........  ....     +.  
T Consensus       157 ~~--~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~-~~~~~~~~~~~--~~~~-----~~--  224 (258)
T cd08215         157 VD--LAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGEN-LLELALKILKG--QYPP-----IP--  224 (258)
T ss_pred             cc--eecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCc-HHHHHHHHhcC--CCCC-----CC--
Confidence            21  2234578999999999888889999999999999999999999997543 22222111111  0110     11  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                          .....++.+++.+||..+|++|||+.|++++
T Consensus       225 ----~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~  255 (258)
T cd08215         225 ----SQYSSELRNLVSSLLQKDPEERPSIAQILQS  255 (258)
T ss_pred             ----CCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence                0223467899999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=100.00  E-value=2.2e-35  Score=321.39  Aligned_cols=262  Identities=19%  Similarity=0.179  Sum_probs=197.2

Q ss_pred             HHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC---
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD---  628 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~---  628 (833)
                      ..+.|+..+.||+|+||.||+|.. .+|..||||++....  ......+.+.+|++++++++||||+++++++....   
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   90 (343)
T cd07880          13 VPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPF--QSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLD   90 (343)
T ss_pred             cccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccc--cchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccc
Confidence            445688889999999999999986 579999999984221  11223457889999999999999999999987654   


Q ss_pred             ---ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccce
Q 003296          629 ---SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIE  705 (833)
Q Consensus       629 ---~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfg  705 (833)
                         ..++||||+ +++|.+++..   ..+++..+..++.|+++||+|||   ..+|+||||||+||+++.++.+|++|||
T Consensus        91 ~~~~~~lv~e~~-~~~l~~~~~~---~~l~~~~~~~i~~qi~~al~~LH---~~gi~H~dlkp~Nill~~~~~~kl~dfg  163 (343)
T cd07880          91 RFHDFYLVMPFM-GTDLGKLMKH---EKLSEDRIQFLVYQMLKGLKYIH---AAGIIHRDLKPGNLAVNEDCELKILDFG  163 (343)
T ss_pred             ccceEEEEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecc
Confidence               358999999 7799988864   35899999999999999999999   7899999999999999999999999999


Q ss_pred             eeeeeCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccc--
Q 003296          706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL--  782 (833)
Q Consensus       706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~--  782 (833)
                      +++......     ....+++.|+|||++.+ ..++.++||||+||++||+++|+.||.+..................  
T Consensus       164 ~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~  238 (343)
T cd07880         164 LARQTDSEM-----TGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMKVTGTPSKE  238 (343)
T ss_pred             cccccccCc-----cccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHH
Confidence            988653221     34568899999998875 4588999999999999999999999975543222111100000000  


Q ss_pred             -ccccc-----------ccccCCc--hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          783 -DHILD-----------FNVSRTS--LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       783 -~~~~~-----------~~~~~~~--~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                       ...+.           +......  ........++.+++.+|++.||++|||+.|++.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~~  298 (343)
T cd07880         239 FVQKLQSEDAKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEALAH  298 (343)
T ss_pred             HHHhhcchhHHHHHHhccccCcchHHHhccCCChHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence             00000           0000000  0001223467899999999999999999999854

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=100.00  E-value=5.3e-35  Score=306.01  Aligned_cols=252  Identities=21%  Similarity=0.213  Sum_probs=196.2

Q ss_pred             cCCccccccCcccEEEEEEcC-CCceEEEEEccccch-hhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          557 ANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDK-IFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      |...+.||+|+||.||++... .+..+++|.++.... ........++.+|+.++++++||||+++++++.+++..++||
T Consensus         2 y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (260)
T cd08222           2 YILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCIIT   81 (260)
T ss_pred             ceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEEE
Confidence            567789999999999999874 455566666532111 111223446788999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcC--CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          635 EYAPKGTLFDVLHGC--LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       635 ey~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||+++++|.+++...  ....++|.+++.++.|+++|+.|||   +.+++|+|+||+||+++. +.+|++|||+++....
T Consensus        82 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~h~~l~~~nili~~-~~~~l~d~g~~~~~~~  157 (260)
T cd08222          82 EYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMH---QRRILHRDLKAKNIFLKN-NLLKIGDFGVSRLLMG  157 (260)
T ss_pred             EeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHH---HcCccccCCChhheEeec-CCEeecccCceeecCC
Confidence            999999999988742  2346899999999999999999999   789999999999999975 5699999999987643


Q ss_pred             CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      ...  ......|++.|+|||+..+..++.++|||||||++|||++|+.||.+... ..........  .     .+..  
T Consensus       158 ~~~--~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~~-~~~~~~~~~~--~-----~~~~--  225 (260)
T cd08222         158 SCD--LATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQNF-LSVVLRIVEG--P-----TPSL--  225 (260)
T ss_pred             Ccc--cccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCccH-HHHHHHHHcC--C-----CCCC--
Confidence            321  12345689999999998888889999999999999999999999964432 2222111110  0     0000  


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                          ......++.+++.+||..+|++||++.|++++
T Consensus       226 ----~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  257 (260)
T cd08222         226 ----PETYSRQLNSIMQSMLNKDPSLRPSAAEILRN  257 (260)
T ss_pred             ----cchhcHHHHHHHHHHhcCChhhCcCHHHHhhC
Confidence                12334578899999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=100.00  E-value=2.6e-35  Score=321.04  Aligned_cols=262  Identities=19%  Similarity=0.206  Sum_probs=198.6

Q ss_pred             HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc--
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS--  629 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~--  629 (833)
                      ..++|.....||+|+||.||+|... +++.||||++....  ......+.+.+|++++++++||||+++++++...+.  
T Consensus        13 ~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   90 (343)
T cd07851          13 VPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPF--QSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLE   90 (343)
T ss_pred             ccCceEEEEEeccCCceEEEEEEECCCCcEEEEEeccccc--chhhHHHHHHHHHHHHHhccCCCHHHHHHHhhcccccc
Confidence            3456888899999999999999975 68999999984221  111234567889999999999999999998876654  


Q ss_pred             ----eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccce
Q 003296          630 ----AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIE  705 (833)
Q Consensus       630 ----~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfg  705 (833)
                          .++|+||+ +++|.+++..   ..+++..+..++.|+++||+|||   +.+|+||||||+||+++.++.+|++|||
T Consensus        91 ~~~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~~~~ql~~aL~~LH---~~gi~H~dlkp~Nill~~~~~~kL~dfg  163 (343)
T cd07851          91 DFQDVYLVTHLM-GADLNNIVKC---QKLSDDHIQFLVYQILRGLKYIH---SAGIIHRDLKPSNIAVNEDCELKILDFG  163 (343)
T ss_pred             ccccEEEEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCCEEEcccc
Confidence                89999999 6699999874   35899999999999999999999   7899999999999999999999999999


Q ss_pred             eeeeeCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccc
Q 003296          706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDH  784 (833)
Q Consensus       706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~  784 (833)
                      ++......     .....+|..|+|||++.+ ..++.++|||||||++|||++|+.||.+..............+...+.
T Consensus       164 ~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~  238 (343)
T cd07851         164 LARHTDDE-----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPDEE  238 (343)
T ss_pred             cccccccc-----ccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHhcCCCCHH
Confidence            99865322     234578899999998765 367899999999999999999999997554332211110000000000


Q ss_pred             ccc------------c-cccCC---chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          785 ILD------------F-NVSRT---SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       785 ~~~------------~-~~~~~---~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      +..            . .....   .........++.+++.+|++.||++|||+.||+++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~h  298 (343)
T cd07851         239 LLQKISSESARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEALAH  298 (343)
T ss_pred             HHhhccchhHHHHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHHhcC
Confidence            000            0 00000   00011235678899999999999999999999864

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-35  Score=322.64  Aligned_cols=253  Identities=19%  Similarity=0.268  Sum_probs=209.1

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEec-----
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLA-----  626 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~-----  626 (833)
                      ++.|++.++||.|.+|.|||++. ++|+.+|||++...     ....++...|.++++.. .|||++.++|+|..     
T Consensus        18 ~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~-----~d~deEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~   92 (953)
T KOG0587|consen   18 ADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPT-----EDEEEEIELEYNMLKKYSHHPNVATFYGAFIKKDPGN   92 (953)
T ss_pred             CCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCC-----ccccHHHHHHHHHHHhccCCCCcceEEEEEEEecCCC
Confidence            45577889999999999999995 68999999998422     22346788899999887 59999999999974     


Q ss_pred             CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceecccee
Q 003296          627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIEL  706 (833)
Q Consensus       627 ~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl  706 (833)
                      ++++|||||||.+||.-|++++..+..+.|..+..|+++++.|+.|||   ...++|||||-.|||+++++.+|+.|||+
T Consensus        93 ~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH---~nkviHRDikG~NiLLT~e~~VKLvDFGv  169 (953)
T KOG0587|consen   93 GDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLH---NNKVIHRDIKGQNVLLTENAEVKLVDFGV  169 (953)
T ss_pred             CCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHh---hcceeeecccCceEEEeccCcEEEeeeee
Confidence            578999999999999999999877778999999999999999999999   88999999999999999999999999999


Q ss_pred             eeeeCCCCCCCccccccccccccccccccCC-----cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccc
Q 003296          707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAYTM-----RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDK  781 (833)
Q Consensus       707 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~  781 (833)
                      +...+...  ....+.+|||.|||||++.+.     .|+..+|+||+|++..||.-|.+|+.+...+...+....     
T Consensus       170 SaQldsT~--grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHPmraLF~IpR-----  242 (953)
T KOG0587|consen  170 SAQLDSTV--GRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPR-----  242 (953)
T ss_pred             eeeeeccc--ccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCcchhhhhccCCC-----
Confidence            98775433  234678999999999998753     378899999999999999999999975544433322111     


Q ss_pred             ccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          782 LDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       782 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                             ..++....+.....++.++|..|+.+|-++||++.+.++|
T Consensus       243 -------NPPPkLkrp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~h  282 (953)
T KOG0587|consen  243 -------NPPPKLKRPKKWSKKFNDFISTCLVKDYEQRPSTEELLKH  282 (953)
T ss_pred             -------CCCccccchhhHHHHHHHHHHHHHhhccccCcchhhhccC
Confidence                   1111111234567789999999999999999999998865

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=100.00  E-value=4e-35  Score=319.35  Aligned_cols=263  Identities=22%  Similarity=0.247  Sum_probs=194.2

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC------
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS------  627 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~------  627 (833)
                      ..|...+.||.|+||.||+|.. .+|+.||+|++....    ....+.+.+|++++++++||||+++++++...      
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~----~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~   80 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTD----PQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTE   80 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCC----CchHHHHHHHHHHHHhcCCCcchhhHhhhccccccccc
Confidence            4677889999999999999997 478999999984322    23456789999999999999999999876654      


Q ss_pred             --------CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC-CCC
Q 003296          628 --------DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS-LKE  698 (833)
Q Consensus       628 --------~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~-~~~  698 (833)
                              ...|+||||++ ++|.+++..   ..+++..+..++.|+++||.|||   ..+|+||||||+||+++. ++.
T Consensus        81 ~~~~~~~~~~~~lv~e~~~-~~L~~~~~~---~~l~~~~~~~~~~qi~~aL~~LH---~~givH~dikp~Nili~~~~~~  153 (342)
T cd07854          81 DVGSLTELNSVYIVQEYME-TDLANVLEQ---GPLSEEHARLFMYQLLRGLKYIH---SANVLHRDLKPANVFINTEDLV  153 (342)
T ss_pred             ccccccccceEEEEeeccc-ccHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEcCCCce
Confidence                    35799999997 599988863   35889999999999999999999   788999999999999984 567


Q ss_pred             ceeccceeeeeeCCCCCC-CccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhh
Q 003296          699 PQIGDIELCKVIDPSKST-GSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNS  776 (833)
Q Consensus       699 ~ki~dfgl~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~  776 (833)
                      +|++|||.++........ .......|+..|+|||++.+ ..++.++|||||||++|||++|+.||.+............
T Consensus       154 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~~~~~~~  233 (342)
T cd07854         154 LKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQLILE  233 (342)
T ss_pred             EEECCcccceecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence            899999999865432111 11123468899999997654 4578999999999999999999999976544332211110


Q ss_pred             cccc----ccc-------cccc--ccccCCc--hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          777 AQQD----KLD-------HILD--FNVSRTS--LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       777 ~~~~----~~~-------~~~~--~~~~~~~--~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ....    ...       ....  ......+  ........++.+++.+|++.||++|||+.|++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~h  300 (342)
T cd07854         234 SVPVVREEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRLTAEEALMH  300 (342)
T ss_pred             hcCCCChHHhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCCchhccCHHHHhCC
Confidence            0000    000       0000  0000000  0001234567899999999999999999999864

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=100.00  E-value=1e-34  Score=315.00  Aligned_cols=264  Identities=18%  Similarity=0.199  Sum_probs=193.7

Q ss_pred             cCCccccccCcccEEEEEEcC-C--CceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecC----C
Q 003296          557 ANPLNVELKTRFSTYYKAVMP-S--GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLAS----D  628 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~-~--~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~----~  628 (833)
                      |+..+.||+|+||.||+|... +  +..||||++...  .......+.+.+|+++++++ +|||||++++++...    .
T Consensus         2 y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~--~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~   79 (332)
T cd07857           2 YELIKELGQGAYGIVCSARNAETSEEETVAIKKITNV--FSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFN   79 (332)
T ss_pred             ceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccc--cccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCC
Confidence            566789999999999999974 4  789999998421  11122346788999999999 599999999876432    4


Q ss_pred             ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeee
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK  708 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~  708 (833)
                      ..|+++||+. ++|.+++..  ...+++..+..++.|++.||+|||   ..+|+||||||+||++++++.+||+|||+++
T Consensus        80 ~~~~~~e~~~-~~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH---~~givH~dlkp~Nili~~~~~~kl~Dfg~a~  153 (332)
T cd07857          80 ELYLYEELME-ADLHQIIRS--GQPLTDAHFQSFIYQILCGLKYIH---SANVLHRDLKPGNLLVNADCELKICDFGLAR  153 (332)
T ss_pred             cEEEEEeccc-CCHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHeEEcCCCCEEeCcCCCce
Confidence            5789999986 699999875  446899999999999999999999   7899999999999999999999999999998


Q ss_pred             eeCCCCCC--CccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccc----cc
Q 003296          709 VIDPSKST--GSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQ----DK  781 (833)
Q Consensus       709 ~~~~~~~~--~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~----~~  781 (833)
                      ........  .......||+.|+|||+..+ ..++.++||||+||++|||++|+.||................+    +.
T Consensus       154 ~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  233 (332)
T cd07857         154 GFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGTPDEET  233 (332)
T ss_pred             ecccccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHHhCCCCHHH
Confidence            66432211  11234579999999998765 4689999999999999999999999975543221111000000    00


Q ss_pred             cccccccc----------ccCC--chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          782 LDHILDFN----------VSRT--SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       782 ~~~~~~~~----------~~~~--~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ...+.++.          ....  ..........+.+++.+|++.||++|||+.|++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~~  292 (332)
T cd07857         234 LSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEALEH  292 (332)
T ss_pred             HHhhhhhhHHHHHHhccccCCcchHhhCCCCCHHHHHHHHHHccCCcccCCCHHHHhcC
Confidence            00000000          0000  00001123578899999999999999999999764

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=1e-34  Score=307.78  Aligned_cols=263  Identities=19%  Similarity=0.244  Sum_probs=200.4

Q ss_pred             cCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      |+..+.||+|+||.||+|+.. +++.||+|++....  ......+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~--~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e   78 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDN--EEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFE   78 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEecccc--ccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEec
Confidence            445678999999999999975 69999999995322  223345678899999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      |++ ++|.+++.... ..+++..+..++.|++.||+|||   ..+|+||||||+||++++++.+|++|||.++.......
T Consensus        79 ~~~-~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~  153 (282)
T cd07829          79 YCD-MDLKKYLDKRP-GPLSPNLIKSIMYQLLRGLAYCH---SHRILHRDLKPQNILINRDGVLKLADFGLARAFGIPLR  153 (282)
T ss_pred             CcC-cCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChheEEEcCCCCEEEecCCcccccCCCcc
Confidence            998 59999998632 46899999999999999999999   78899999999999999999999999999987643321


Q ss_pred             CCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHh--hccc--cc---cccc--
Q 003296          716 TGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRN--SAQQ--DK---LDHI--  785 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~--~~~~--~~---~~~~--  785 (833)
                        ......++..|+|||++.+. .++.++|||||||++|||++|+.||.............  ....  ..   ....  
T Consensus       154 --~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (282)
T cd07829         154 --TYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLPD  231 (282)
T ss_pred             --ccCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCcHHHHHhhccccc
Confidence              12334567889999998766 78999999999999999999999997544322211110  0000  00   0000  


Q ss_pred             ccccccC---Cc--hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          786 LDFNVSR---TS--LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       786 ~~~~~~~---~~--~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .+.....   ..  .........+.+++.+||+.||++||++.|++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~  279 (282)
T cd07829         232 YKPTFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALKH  279 (282)
T ss_pred             ccccccccCccchHHhcccccHHHHHHHHHhhccCcccCCCHHHHhhC
Confidence            0000000   00  0011224578999999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=100.00  E-value=4.8e-35  Score=342.88  Aligned_cols=148  Identities=18%  Similarity=0.220  Sum_probs=130.3

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +.|...+.||+|+||.||+|+.. +++.||||+++.. ........+.+.+|+++++.++|||||++++++...+..|+|
T Consensus         4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~-~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lV   82 (669)
T cd05610           4 EEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKA-DMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLV   82 (669)
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehh-hccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEE
Confidence            45777899999999999999975 7899999999422 211222346789999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeee
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK  708 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~  708 (833)
                      |||+++|+|.++++.  ...+++..++.|+.||+.||+|||   ..+||||||||+|||++.++.+||+|||+++
T Consensus        83 mEy~~g~~L~~li~~--~~~l~~~~~~~i~~qil~aL~yLH---~~gIiHrDLKP~NILl~~~g~vkL~DFGls~  152 (669)
T cd05610          83 MEYLIGGDVKSLLHI--YGYFDEEMAVKYISEVALALDYLH---RHGIIHRDLKPDNMLISNEGHIKLTDFGLSK  152 (669)
T ss_pred             EeCCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCccHHHEEEcCCCCEEEEeCCCCc
Confidence            999999999999975  345889999999999999999999   7799999999999999999999999999986

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-35  Score=264.48  Aligned_cols=263  Identities=17%  Similarity=0.231  Sum_probs=200.2

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      .|+..+.||+|.||+||||+. .+++.||.|+++-.+  .+++......+||.+++.++|.|||++++....+...-+|+
T Consensus         3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrldd--ddegvpssalreicllkelkhknivrl~dvlhsdkkltlvf   80 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDD--DDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVF   80 (292)
T ss_pred             chHHHHhhcCCcceeeEecccCCccceEEEEEEeccC--CCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeH
Confidence            355567899999999999996 578999999984322  23455678899999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      |||.. +|..+.... .+.++......++.|+.+||.|+|   ++.+.|||+||.|.|++.+|+.|++|||+++...-.-
T Consensus        81 e~cdq-dlkkyfdsl-ng~~d~~~~rsfmlqllrgl~fch---shnvlhrdlkpqnllin~ngelkladfglarafgipv  155 (292)
T KOG0662|consen   81 EFCDQ-DLKKYFDSL-NGDLDPEIVRSFMLQLLRGLGFCH---SHNVLHRDLKPQNLLINRNGELKLADFGLARAFGIPV  155 (292)
T ss_pred             HHhhH-HHHHHHHhc-CCcCCHHHHHHHHHHHHhhhhhhh---hhhhhhccCCcceEEeccCCcEEecccchhhhcCCce
Confidence            99975 888887754 456899999999999999999999   7889999999999999999999999999998764322


Q ss_pred             CCCccccccccccccccccccCCc-ccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccc--------cccc
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMR-VTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQD--------KLDH  784 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~--------~~~~  784 (833)
                        ...+..+-|..|.+|.++.+.+ |++..|+||-||++.|+.. |++.|.+ .+......+....-+        .+..
T Consensus       156 --rcysaevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg-~dvddqlkrif~~lg~p~ed~wps~t~  232 (292)
T KOG0662|consen  156 --RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPG-NDVDDQLKRIFRLLGTPTEDQWPSMTK  232 (292)
T ss_pred             --EeeeceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCC-CcHHHHHHHHHHHhCCCccccCCcccc
Confidence              1234456799999999998765 8999999999999999986 5555554 443332222211111        1112


Q ss_pred             ccccccc---CCchhHHH----HHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          785 ILDFNVS---RTSLAVRS----QMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       785 ~~~~~~~---~~~~~~~~----~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .-|....   .....+..    ....-.++..+.+.-+|.+|.++++.+++
T Consensus       233 lpdyk~yp~ypattswsqivp~lns~grdllqkll~cnp~qrisaeaalqh  283 (292)
T KOG0662|consen  233 LPDYKPYPIYPATTSWSQIVPKLNSTGRDLLQKLLKCNPAQRISAEAALQH  283 (292)
T ss_pred             CCCCcccCCccccchHHHHhhhhcchhHHHHHHHhccCcccccCHHHHhcC
Confidence            2221111   11111222    22345678888899999999999998875

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.2e-36  Score=285.74  Aligned_cols=265  Identities=17%  Similarity=0.233  Sum_probs=200.7

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC-------
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS-------  627 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~-------  627 (833)
                      .|+....||+|.||.||+|+.+ +|+.||+|++-.  .....+......+|+++|..++|+|++.+++.|...       
T Consensus        18 ~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlm--eneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~   95 (376)
T KOG0669|consen   18 KYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLM--ENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRD   95 (376)
T ss_pred             HHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHH--hccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccc
Confidence            4555678999999999999975 688899988732  112234456678999999999999999999988642       


Q ss_pred             -CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceecccee
Q 003296          628 -DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIEL  706 (833)
Q Consensus       628 -~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl  706 (833)
                       ..+|+|+++|+. ||+.+|... ...++..++.+++.++..||.|+|   +..|+|||+||+|+||+.++..|++|||+
T Consensus        96 r~t~ylVf~~ceh-DLaGlLsn~-~vr~sls~Ikk~Mk~Lm~GL~~iH---r~kilHRDmKaaNvLIt~dgilklADFGl  170 (376)
T KOG0669|consen   96 RATFYLVFDFCEH-DLAGLLSNR-KVRFSLSEIKKVMKGLMNGLYYIH---RNKILHRDMKAANVLITKDGILKLADFGL  170 (376)
T ss_pred             cceeeeeHHHhhh-hHHHHhcCc-cccccHHHHHHHHHHHHHHHHHHH---HhhHHhhcccHhhEEEcCCceEEeecccc
Confidence             358999999987 999998764 346888999999999999999999   88999999999999999999999999999


Q ss_pred             eeeeCCCCC--CCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccc
Q 003296          707 CKVIDPSKS--TGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLD  783 (833)
Q Consensus       707 ~~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~  783 (833)
                      ++.+.....  ....+..+-|..|.+||.+.+. .|+++.|||.-|||+.||.||.+-+.+..+..+........+. ..
T Consensus       171 ar~fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~LcGs-~t  249 (376)
T KOG0669|consen  171 ARAFSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQLCGS-IT  249 (376)
T ss_pred             ccceecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHHhcc-CC
Confidence            987643322  1122344569999999998865 5999999999999999999999998866655443322222111 11


Q ss_pred             cccccc--------------cc-CCchhHHHHH------HHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          784 HILDFN--------------VS-RTSLAVRSQM------LTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       784 ~~~~~~--------------~~-~~~~~~~~~~------~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .-+.|.              ++ .......+..      .+.++++.+++..||.+||++.|++.|
T Consensus       250 kevWP~~d~lpL~~sie~ePl~~~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~alnh  315 (376)
T KOG0669|consen  250 KEVWPNVDNLPLYQSIELEPLPKGQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRIDADQALNH  315 (376)
T ss_pred             cccCCCcccchHHHhccCCCCCcchhhhhhhhcccccCChhHHHHHHHHhccCcccCcchHhhhch
Confidence            111111              00 0001111222      268899999999999999999999876

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.2e-34  Score=299.43  Aligned_cols=242  Identities=22%  Similarity=0.259  Sum_probs=195.1

Q ss_pred             cccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCCCCC
Q 003296          563 ELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGT  641 (833)
Q Consensus       563 ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~g~  641 (833)
                      ||+|+||.||++... +|+.||+|.+... ..........+..|++++++++||||+++++.+..++..++||||+++++
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~   79 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKK-KIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGE   79 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehh-hhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCc
Confidence            689999999999975 6899999998432 22222245689999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCcccc
Q 003296          642 LFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST  721 (833)
Q Consensus       642 L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~  721 (833)
                      |.+++..  ...+++.....++.|+++|+.|+|   ..+++|+||||+||+++.++.++++|||.+........  ....
T Consensus        80 L~~~l~~--~~~l~~~~~~~~~~qi~~~l~~lh---~~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~--~~~~  152 (250)
T cd05123          80 LFSHLSK--EGRFSEERARFYAAEIVLALEYLH---SLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGS--RTNT  152 (250)
T ss_pred             HHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcceEEEcCCCcEEEeecCcceecccCCC--cccC
Confidence            9999976  336899999999999999999999   78999999999999999999999999999887643321  2245


Q ss_pred             ccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHH
Q 003296          722 VAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQM  801 (833)
Q Consensus       722 ~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  801 (833)
                      ..|+..|+|||...+...+.++|+||||+++||+++|+.||..... ............        .++.      ...
T Consensus       153 ~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~-~~~~~~~~~~~~--------~~~~------~~~  217 (250)
T cd05123         153 FCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDR-KEIYEKILKDPL--------RFPE------FLS  217 (250)
T ss_pred             CcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHhcCCC--------CCCC------CCC
Confidence            6789999999999888889999999999999999999999975432 222211111100        0110      113


Q ss_pred             HHHHHHHHhccCCCCCCCCCH---HHHHH
Q 003296          802 LTVLKVAVACVSVSPEARPKM---KSVLR  827 (833)
Q Consensus       802 ~~~~~l~~~cl~~dP~~Rps~---~evl~  827 (833)
                      .++.+++.+||..||++||++   ++++.
T Consensus       218 ~~l~~~i~~~l~~~p~~R~~~~~~~~l~~  246 (250)
T cd05123         218 PEARDLISGLLQKDPTKRLGSGGAEEIKA  246 (250)
T ss_pred             HHHHHHHHHHhcCCHhhCCCcccHHHHHh
Confidence            467789999999999999999   56554

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.2e-38  Score=319.82  Aligned_cols=419  Identities=31%  Similarity=0.433  Sum_probs=261.9

Q ss_pred             CCEEECCCCCCCCc-ccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCC
Q 003296           10 LKLLNFSKNELVSL-PTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGN   88 (833)
Q Consensus        10 L~~L~ls~N~l~~i-~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N   88 (833)
                      ++.|.+++|.+..+ +....+..|++|++.+|++... |.+++.+..++.|+.|+|+++ .+|..++.+.+|..|+.++|
T Consensus        47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~l-p~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n  124 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQL-PAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSN  124 (565)
T ss_pred             hhhhhhccCchhhccHhhhcccceeEEEeccchhhhC-CHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccc
Confidence            45566666666654 4455666666666666666533 335566666666666666665 35556666666666666666


Q ss_pred             cCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCCh
Q 003296           89 AFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPG  168 (833)
Q Consensus        89 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~  168 (833)
                      .+. .+|++++.+..|..|+..+|+++ ..|+++.++.+|..|++.+|+++...|..+. ++.|+++++..|-+. .+|.
T Consensus       125 ~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~  200 (565)
T KOG0472|consen  125 ELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPP  200 (565)
T ss_pred             cee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCCh
Confidence            665 45555666666666666666665 3455566666666666666666644444444 666666666666554 3444


Q ss_pred             hh--hhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCC---cCCcEEEcCCccccCCCCccccCCCC
Q 003296          169 GI--TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS---PNLVRLRLGTNLLIGEIPSATFTSLE  243 (833)
Q Consensus       169 ~~--~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~---~~L~~L~l~~n~l~~~~~~~~f~~l~  243 (833)
                      .+  +..|.-|+|..|++.. .| .|..+..|..|.++.|++. .+|....   +++..|++.+|++.. +|. ...-+.
T Consensus       201 ~lg~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pd-e~clLr  275 (565)
T KOG0472|consen  201 ELGGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPD-EICLLR  275 (565)
T ss_pred             hhcchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-Cch-HHHHhh
Confidence            33  3445556666666653 33 5555666666666666654 3444333   455556666666542 332 344556


Q ss_pred             CCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCC------------------------------------------
Q 003296          244 KLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNG------------------------------------------  281 (833)
Q Consensus       244 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------------------------  281 (833)
                      +|++||+|+|.|++ .|.+++++ .|+.|-+.+|.+..                                          
T Consensus       276 sL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~  353 (565)
T KOG0472|consen  276 SLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSE  353 (565)
T ss_pred             hhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCC
Confidence            66666666666663 34456666 56666666665420                                          


Q ss_pred             ----------------------CChhhhCCCC---CCcEEEccCCcCCCcCchhhcCCCcCcee-eccCCcCcccCcccc
Q 003296          282 ----------------------SLPIQLGSLG---ILQVMNLQLNKLSGEIPSQFSQLKLLSTM-NISWNSLSGSIPSFL  335 (833)
Q Consensus       282 ----------------------~~p~~~~~l~---~L~~L~L~~N~l~~~~p~~~~~l~~L~~L-~Ls~N~l~~~~~~~~  335 (833)
                                            .+|.......   -....+++.|++. .+|..+..++.+.+. .+++|.+ +.+|..+
T Consensus       354 ~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l  431 (565)
T KOG0472|consen  354 SFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLEL  431 (565)
T ss_pred             cccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHH
Confidence                                  1111111111   1344555555554 345444444444333 3344444 4677888


Q ss_pred             ccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCccCCCCccccc--ceeeccccccccchhhhhccCCCCCE
Q 003296          336 SNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQ--IALNLSSNLFEGPIPTTFARLNGLEV  413 (833)
Q Consensus       336 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~--~~L~Ls~N~l~~~~p~~~~~l~~L~~  413 (833)
                      +.+++|..|+|++|-+. .+|..++.+..|+.|+++.|+|. .+|......+  ..+-.+.|++....|..+.++.+|+.
T Consensus       432 ~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t  509 (565)
T KOG0472|consen  432 SQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT  509 (565)
T ss_pred             Hhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence            89999999999999987 78999999999999999999876 3343322222  33445568888777778999999999


Q ss_pred             EecccCcCccccchhccCCCCCCeeeCcCCccc
Q 003296          414 LDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLS  446 (833)
Q Consensus       414 L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  446 (833)
                      |||.+|.+. .+|..+++|.+|+.|++++|+|+
T Consensus       510 LDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  510 LDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             eccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            999999997 67788999999999999999998

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=100.00  E-value=2.6e-34  Score=296.06  Aligned_cols=219  Identities=21%  Similarity=0.202  Sum_probs=177.2

Q ss_pred             CcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCCCCChhh
Q 003296          566 TRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFD  644 (833)
Q Consensus       566 g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~g~L~~  644 (833)
                      |.||.||++++ .+|+.||+|++...         ..+.+|...+....||||+++++++...+..++||||+++|+|.+
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~   74 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKS---------SEYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWS   74 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecch---------hhhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHH
Confidence            88999999997 47899999999421         134456666666779999999999999999999999999999999


Q ss_pred             hhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCccccccc
Q 003296          645 VLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAG  724 (833)
Q Consensus       645 ~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~g  724 (833)
                      ++..  ...+++..+..++.|+++||+|||   +.+|+||||||+||+++.++.++++|||.+......     .....+
T Consensus        75 ~l~~--~~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~-----~~~~~~  144 (237)
T cd05576          75 HISK--FLNIPEECVKRWAAEMVVALDALH---REGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDS-----CDGEAV  144 (237)
T ss_pred             HHHH--hcCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEEcCCCCEEEecccchhccccc-----cccCCc
Confidence            9875  345899999999999999999999   789999999999999999999999999987655322     123456


Q ss_pred             cccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHH
Q 003296          725 SVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTV  804 (833)
Q Consensus       725 t~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  804 (833)
                      +..|+|||+..+..++.++||||+||++|||++|+.|+.......             .......++      .....++
T Consensus       145 ~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~~-------------~~~~~~~~~------~~~~~~~  205 (237)
T cd05576         145 ENMYCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECHPSGI-------------NTHTTLNIP------EWVSEEA  205 (237)
T ss_pred             CccccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhcCchhc-------------ccccccCCc------ccCCHHH
Confidence            788999999988889999999999999999999998875321100             000000111      1223567


Q ss_pred             HHHHHhccCCCCCCCCCH
Q 003296          805 LKVAVACVSVSPEARPKM  822 (833)
Q Consensus       805 ~~l~~~cl~~dP~~Rps~  822 (833)
                      .+++.+|++.||++||++
T Consensus       206 ~~li~~~l~~dp~~R~~~  223 (237)
T cd05576         206 RSLLQQLLQFNPTERLGA  223 (237)
T ss_pred             HHHHHHHccCCHHHhcCC
Confidence            889999999999999997

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=9.4e-34  Score=326.65  Aligned_cols=256  Identities=22%  Similarity=0.318  Sum_probs=201.7

Q ss_pred             hcCCccccccCcccEEEEEEcC----C----CceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEec
Q 003296          556 VANPLNVELKTRFSTYYKAVMP----S----GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLA  626 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~----~----~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~  626 (833)
                      +.+..+.+|+|.||.|++|...    .    ...||||.++...   ...+.+.+..|+++|+.+ +|||||.++|+|..
T Consensus       297 ~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~---~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~  373 (609)
T KOG0200|consen  297 NLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENA---SSSEKKDLMSELNVLKELGKHPNIVNLLGACTQ  373 (609)
T ss_pred             hccccceeecccccceEeEEEeecccccccceEEEEEEeccccc---CcHHHHHHHHHHHHHHHhcCCcchhhheeeecc
Confidence            3345569999999999999842    2    4679999995222   224568899999999999 59999999999999


Q ss_pred             CCceEEEEeeCCCCChhhhhhcCC-------C-------CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCcccee
Q 003296          627 SDSAYLFYEYAPKGTLFDVLHGCL-------E-------NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIF  692 (833)
Q Consensus       627 ~~~~~lv~ey~~~g~L~~~l~~~~-------~-------~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nil  692 (833)
                      ++..++|+||+..|+|.++++..+       .       ..++....+.++.|||.|++||+   +.++||||+-.+|||
T Consensus       374 ~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~---~~~~vHRDLAaRNVL  450 (609)
T KOG0200|consen  374 DGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLA---SVPCVHRDLAARNVL  450 (609)
T ss_pred             CCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHh---hCCccchhhhhhhEE
Confidence            999999999999999999998754       0       13888899999999999999999   788999999999999


Q ss_pred             eCCCCCceeccceeeeeeCCCCCCCccccccc--cccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHH
Q 003296          693 LKSLKEPQIGDIELCKVIDPSKSTGSLSTVAG--SVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELA  769 (833)
Q Consensus       693 l~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~g--t~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~  769 (833)
                      +.++..+||+|||+|+......... .....|  ...|||||.+....|+.|+|||||||+|||++| |..||.+-....
T Consensus       451 i~~~~~~kIaDFGlar~~~~~~~y~-~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~~~~  529 (609)
T KOG0200|consen  451 ITKNKVIKIADFGLARDHYNKDYYR-TKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIPPTE  529 (609)
T ss_pred             ecCCCEEEEccccceeccCCCCceE-ecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCCcHH
Confidence            9999999999999999654433221 111222  235999999999999999999999999999998 788887522122


Q ss_pred             HHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          770 KWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                      .. ......+.+++.            +..+..++.+++..||+.+|++||+..|+++.++.
T Consensus       530 ~l-~~~l~~G~r~~~------------P~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~~~~~  578 (609)
T KOG0200|consen  530 EL-LEFLKEGNRMEQ------------PEHCSDEIYDLMKSCWNADPEDRPTFSECVEFFEK  578 (609)
T ss_pred             HH-HHHHhcCCCCCC------------CCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHHHH
Confidence            22 222223222111            11235577899999999999999999999998875

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-34  Score=309.28  Aligned_cols=241  Identities=17%  Similarity=0.148  Sum_probs=194.5

Q ss_pred             HHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCce
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~  630 (833)
                      +++.|+....+|.|+|+.|-++.. ++++..|||++...        ..+-.+|+.++.+. +|||||++.+.|.+..+.
T Consensus       320 ~~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~--------~~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~  391 (612)
T KOG0603|consen  320 FTESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKR--------ADDNQDEIPISLLVRDHPNIVKSHDVYEDGKEI  391 (612)
T ss_pred             cchhhccccccCCCCccceeeeeccccccchhheecccc--------ccccccccchhhhhcCCCcceeecceecCCcee
Confidence            456777888899999999999986 68999999999422        12345688777766 599999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee-CCCCCceeccceeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL-KSLKEPQIGDIELCKV  709 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill-~~~~~~ki~dfgl~~~  709 (833)
                      |+|||++.+|-+.+.+...   .....++..|+.+++.|+.|||   ..+|||||+||+|||+ ++.++++++|||.++.
T Consensus       392 ~~v~e~l~g~ell~ri~~~---~~~~~e~~~w~~~lv~Av~~LH---~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~  465 (612)
T KOG0603|consen  392 YLVMELLDGGELLRRIRSK---PEFCSEASQWAAELVSAVDYLH---EQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSE  465 (612)
T ss_pred             eeeehhccccHHHHHHHhc---chhHHHHHHHHHHHHHHHHHHH---hcCeeecCCChhheeecCCCCcEEEEEechhhh
Confidence            9999999999888877642   2222677789999999999999   7899999999999999 5889999999999987


Q ss_pred             eCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      ....     ..+.+=|..|.|||+.....|++++|||||||+||||++|+.||.....-.+.... ..         .+.
T Consensus       466 ~~~~-----~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~~ei~~~-i~---------~~~  530 (612)
T KOG0603|consen  466 LERS-----CDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAGIEIHTR-IQ---------MPK  530 (612)
T ss_pred             Cchh-----hcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCchHHHHHh-hc---------CCc
Confidence            6543     23456688999999999999999999999999999999999999854332111111 11         111


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .      ....+..+.+|+..||+.||.+||+|.|+..+
T Consensus       531 ~------s~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~h  563 (612)
T KOG0603|consen  531 F------SECVSDEAKDLLQQLLQVDPALRLGADEIGAH  563 (612)
T ss_pred             c------ccccCHHHHHHHHHhccCChhhCcChhhhccC
Confidence            1      13456678899999999999999999998754

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-34  Score=293.74  Aligned_cols=260  Identities=20%  Similarity=0.259  Sum_probs=198.1

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEcc----ccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEe-cCC
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLN----WSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVL-ASD  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~----~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~-~~~  628 (833)
                      +.|-..+++|+|+|+.||||.+ ...+-||||+-.    |++ .......+...+|.+|.+.++||.||++|+||. +.+
T Consensus       463 ~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~Wrd-EKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtd  541 (775)
T KOG1151|consen  463 DRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRD-EKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTD  541 (775)
T ss_pred             HHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhh-HhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccc
Confidence            3444568999999999999996 456778888642    221 122334567899999999999999999999996 567


Q ss_pred             ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC---CCCCceeccce
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK---SLKEPQIGDIE  705 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~---~~~~~ki~dfg  705 (833)
                      .+|-|+|||+|.||.-+|+.  ...+++.++..|+.||+.||.||.+- ++||||-|+||.|||+.   ..|.+||.|||
T Consensus       542 sFCTVLEYceGNDLDFYLKQ--hklmSEKEARSIiMQiVnAL~YLNEi-kpPIIHYDLKPgNILLv~GtacGeIKITDFG  618 (775)
T KOG1151|consen  542 SFCTVLEYCEGNDLDFYLKQ--HKLMSEKEARSIIMQIVNALKYLNEI-KPPIIHYDLKPGNILLVNGTACGEIKITDFG  618 (775)
T ss_pred             cceeeeeecCCCchhHHHHh--hhhhhHHHHHHHHHHHHHHHHHHhcc-CCCeeeeccCCccEEEecCcccceeEeeecc
Confidence            89999999999999999986  44689999999999999999999865 68999999999999995   45789999999


Q ss_pred             eeeeeCCCCCC-----CccccccccccccccccccCC----cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhh
Q 003296          706 LCKVIDPSKST-----GSLSTVAGSVGYIPPEYAYTM----RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNS  776 (833)
Q Consensus       706 l~~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~----~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~  776 (833)
                      ++++++.....     ..++..+||.+|++||.+.-+    +.+.|+||||.|||+|..+.|+.||.....-......  
T Consensus       619 LSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQQdILqe--  696 (775)
T KOG1151|consen  619 LSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQQDILQE--  696 (775)
T ss_pred             hhhhccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchhHHHHHhh--
Confidence            99998754332     123457899999999987533    4789999999999999999999999744332221111  


Q ss_pred             cccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 003296          777 AQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLR  827 (833)
Q Consensus       777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~  827 (833)
                         ..+-..-...++.    .+....++.++|.+||+..-++|....|+..
T Consensus       697 ---NTIlkAtEVqFP~----KPvVsseAkaFIRRCLaYRKeDR~DV~qLA~  740 (775)
T KOG1151|consen  697 ---NTILKATEVQFPP----KPVVSSEAKAFIRRCLAYRKEDRIDVQQLAC  740 (775)
T ss_pred             ---hchhcceeccCCC----CCccCHHHHHHHHHHHHhhhhhhhhHHHHcc
Confidence               1111110111111    1234557788999999999888888777653

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=100.00  E-value=9.9e-35  Score=291.73  Aligned_cols=263  Identities=16%  Similarity=0.172  Sum_probs=204.7

Q ss_pred             HHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCC--C----CcccceEEE
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSN--S----NVMTPLAYV  624 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H--~----niv~~~~~~  624 (833)
                      ..++.|.....+|+|.||.|-++.+. .+..||||+++...     ..++...-|++++.++.+  |    -+|++.+||
T Consensus        86 ~l~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~-----kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wF  160 (415)
T KOG0671|consen   86 ILTNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVD-----KYREAALIEIEVLQKINESDPNGKFRCVQMRDWF  160 (415)
T ss_pred             ccccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHH-----HHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhh
Confidence            34677888899999999999999974 68999999995222     245677889999999942  3    378899999


Q ss_pred             ecCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC--------
Q 003296          625 LASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL--------  696 (833)
Q Consensus       625 ~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~--------  696 (833)
                      .-.++.|+|+|.+ |-|+++++.+....+.+...+..|+.|++++++|||   +.+++|-|+||+|||+.+.        
T Consensus       161 dyrghiCivfell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh---~~kl~HTDLKPENILfvss~~~~~~~~  236 (415)
T KOG0671|consen  161 DYRGHICIVFELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLH---DLKLTHTDLKPENILFVSSEYFKTYNP  236 (415)
T ss_pred             hccCceEEEEecc-ChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHH---hcceeecCCChheEEEeccceEEEecc
Confidence            9999999999988 559999999866668899999999999999999999   8899999999999998322        


Q ss_pred             ------------CCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccC
Q 003296          697 ------------KEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQ  764 (833)
Q Consensus       697 ------------~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~  764 (833)
                                  ..+||.|||-|.......     ++++.|..|.|||++.+-.++.++||||+||||+|+.||...|..
T Consensus       237 k~~~~~~r~~ks~~I~vIDFGsAtf~~e~h-----s~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqt  311 (415)
T KOG0671|consen  237 KKKVCFIRPLKSTAIKVIDFGSATFDHEHH-----STIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQT  311 (415)
T ss_pred             CCccceeccCCCcceEEEecCCcceeccCc-----ceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceeccc
Confidence                        247899999998754332     567899999999999999999999999999999999999999986


Q ss_pred             CccHHHHHHHhhccccccccccccc------------------------ccCCchh-------HHHHHHHHHHHHHhccC
Q 003296          765 GNELAKWVLRNSAQQDKLDHILDFN------------------------VSRTSLA-------VRSQMLTVLKVAVACVS  813 (833)
Q Consensus       765 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~-------~~~~~~~~~~l~~~cl~  813 (833)
                      ..+....++...--++....++...                        ....+..       ...+..++++|+.+||.
T Consensus       312 Hen~EHLaMMerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~  391 (415)
T KOG0671|consen  312 HENLEHLAMMERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLE  391 (415)
T ss_pred             CCcHHHHHHHHHhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHc
Confidence            6554433222111111111111111                        0000111       11234579999999999


Q ss_pred             CCCCCCCCHHHHHHH
Q 003296          814 VSPEARPKMKSVLRM  828 (833)
Q Consensus       814 ~dP~~Rps~~evl~~  828 (833)
                      .||.+|+|++|+++|
T Consensus       392 fDP~~RiTl~EAL~H  406 (415)
T KOG0671|consen  392 FDPARRITLREALSH  406 (415)
T ss_pred             cCccccccHHHHhcC
Confidence            999999999999875

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-34  Score=281.07  Aligned_cols=246  Identities=17%  Similarity=0.246  Sum_probs=198.5

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~l  632 (833)
                      ++|+...+||+|+|++|..+.+ ++.+.+|+|+++ +.-..+..+..-...|-.+..+. +||.+|.++.+|+.+..++.
T Consensus       250 ~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvk-kel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlff  328 (593)
T KOG0695|consen  250 QDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVK-KELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLFF  328 (593)
T ss_pred             ccceeeeeecCcchhhhhheehcccceeeehhhHH-HHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEEE
Confidence            4678889999999999999997 478999999994 33333344555677788888776 69999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      |.||++||+|.-+++.  .+.+++..+..+..+|+-||.|||   +.+||.||+|..|||+|..|++|+.|+|+++.--.
T Consensus       329 vieyv~ggdlmfhmqr--qrklpeeharfys~ei~lal~flh---~rgiiyrdlkldnvlldaeghikltdygmcke~l~  403 (593)
T KOG0695|consen  329 VIEYVNGGDLMFHMQR--QRKLPEEHARFYSAEICLALNFLH---ERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGLG  403 (593)
T ss_pred             EEEEecCcceeeehhh--hhcCcHHHhhhhhHHHHHHHHHHh---hcCeeeeeccccceEEccCCceeecccchhhcCCC
Confidence            9999999999988876  567999999999999999999999   88999999999999999999999999999986533


Q ss_pred             CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCccc--CC----ccHHHHHHHhhcccccccccc
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVN--QG----NELAKWVLRNSAQQDKLDHIL  786 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~--~~----~~~~~~~~~~~~~~~~~~~~~  786 (833)
                      ..  ..++++||||.|.|||++.+..|...+|+|++||+++||+.|+.||+  +.    ..-..+....         ++
T Consensus       404 ~g--d~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d~ntedylfqv---------il  472 (593)
T KOG0695|consen  404 PG--DTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTEDYLFQV---------IL  472 (593)
T ss_pred             CC--cccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCcccchhHHHHHH---------Hh
Confidence            22  24478999999999999999999999999999999999999999997  11    1112222111         12


Q ss_pred             cccccCCchhHHHHHHHHHHHHHhccCCCCCCCCC
Q 003296          787 DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPK  821 (833)
Q Consensus       787 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps  821 (833)
                      ...++.    ++..+.++..++..-+.+||.+|..
T Consensus       473 ekqiri----prslsvkas~vlkgflnkdp~erlg  503 (593)
T KOG0695|consen  473 EKQIRI----PRSLSVKASHVLKGFLNKDPKERLG  503 (593)
T ss_pred             hhcccc----cceeehhhHHHHHHhhcCCcHHhcC
Confidence            222221    1233445567778889999999953

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.1e-35  Score=300.00  Aligned_cols=251  Identities=17%  Similarity=0.229  Sum_probs=209.9

Q ss_pred             hcCCccccccCcccEEEEEEcCC-CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMPS-GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +++....+|-|+||.|=.+.... ...+|+|+++ +....+....+....|-.||...+.|.||++|-.|.++..+|+.|
T Consensus       421 dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilk-K~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLm  499 (732)
T KOG0614|consen  421 DLKRIATLGVGGFGRVELVKVNSQKATFALKILK-KKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYMLM  499 (732)
T ss_pred             hhhhhhhcccCccceEEEEEecccchHHHHHHHh-HhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhhH
Confidence            44556779999999998888643 3459999994 445555666788999999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      |-|-||.+...|++  .+.++..+...++..+.+|++|||   +.+||.||+||+|.++|.+|.+|+.|||+|+.+..+.
T Consensus       500 EaClGGElWTiLrd--Rg~Fdd~tarF~~acv~EAfeYLH---~k~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~  574 (732)
T KOG0614|consen  500 EACLGGELWTILRD--RGSFDDYTARFYVACVLEAFEYLH---RKGIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGR  574 (732)
T ss_pred             HhhcCchhhhhhhh--cCCcccchhhhhHHHHHHHHHHHH---hcCceeccCChhheeeccCCceEEeehhhHHHhccCC
Confidence            99999999999987  456888899999999999999999   8999999999999999999999999999999987666


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCc
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS  794 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (833)
                      .   +.++||||.|.|||++.....+.++|.||+|+++||+++|.+||.+.+.+..+-.....    ++.+-        
T Consensus       575 K---TwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpmktYn~ILkG----id~i~--------  639 (732)
T KOG0614|consen  575 K---TWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDPMKTYNLILKG----IDKIE--------  639 (732)
T ss_pred             c---eeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHhh----hhhhh--------
Confidence            4   36899999999999999999999999999999999999999999987776655433221    11110        


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCCCCC-----HHHHHHH
Q 003296          795 LAVRSQMLTVLKVAVACVSVSPEARPK-----MKSVLRM  828 (833)
Q Consensus       795 ~~~~~~~~~~~~l~~~cl~~dP~~Rps-----~~evl~~  828 (833)
                       .++.......+++.+.+..+|.+|..     +.||-+|
T Consensus       640 -~Pr~I~k~a~~Lik~LCr~~P~ERLG~~~~gI~DIkkH  677 (732)
T KOG0614|consen  640 -FPRRITKTATDLIKKLCRDNPTERLGYQKGGINDIKKH  677 (732)
T ss_pred             -cccccchhHHHHHHHHHhcCcHhhhccccCChHHHHhh
Confidence             11234456778999999999999975     5565544

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.6e-34  Score=300.99  Aligned_cols=204  Identities=17%  Similarity=0.225  Sum_probs=174.1

Q ss_pred             cCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      |...+.||-|+||.|..+.. ++...||+|.+.++ .............|-.||+..+.+.||++|-.|++.+.+|+|||
T Consensus       631 Fvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKa-DVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFVMd  709 (1034)
T KOG0608|consen  631 FVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKA-DVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD  709 (1034)
T ss_pred             eEEEeeecccccceeEEEeecchhhHHHHhhhHHH-HHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEEEe
Confidence            55678899999999999874 67889999999533 33334445678899999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC----
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID----  711 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~----  711 (833)
                      |++|||+..+|-+  .+.+++..+..++.+++.|+++.|   .+++|||||||+|||||.+|++|+.|||+|.-+.    
T Consensus       710 YIPGGDmMSLLIr--mgIFeE~LARFYIAEltcAiesVH---kmGFIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWTHd  784 (1034)
T KOG0608|consen  710 YIPGGDMMSLLIR--MGIFEEDLARFYIAELTCAIESVH---KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHD  784 (1034)
T ss_pred             ccCCccHHHHHHH--hccCHHHHHHHHHHHHHHHHHHHH---hccceecccCccceEEccCCceeeeeccccccceeccc
Confidence            9999999999876  567888889999999999999999   9999999999999999999999999999985321    


Q ss_pred             -----CCCC-----------------------------C--CccccccccccccccccccCCcccccCcchhhHHHHHHH
Q 003296          712 -----PSKS-----------------------------T--GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLEL  755 (833)
Q Consensus       712 -----~~~~-----------------------------~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~el  755 (833)
                           .+..                             .  -.....+||+.|+|||++....|+..+|+||.|||||||
T Consensus       785 skYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~em  864 (1034)
T KOG0608|consen  785 SKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILYEM  864 (1034)
T ss_pred             cccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhhHHHHHH
Confidence                 0000                             0  001135799999999999999999999999999999999


Q ss_pred             HhCCCcccCCc
Q 003296          756 LTGKTAVNQGN  766 (833)
Q Consensus       756 ltg~~p~~~~~  766 (833)
                      +.|+.||.+..
T Consensus       865 ~~g~~pf~~~t  875 (1034)
T KOG0608|consen  865 LVGQPPFLADT  875 (1034)
T ss_pred             hhCCCCccCCC
Confidence            99999997543

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=100.00  E-value=3.1e-33  Score=310.33  Aligned_cols=269  Identities=15%  Similarity=0.113  Sum_probs=184.6

Q ss_pred             HHhcCCccccccCcccEEEEEEc-----------------CCCceEEEEEccccchhh----------hccChhHHHHHH
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-----------------PSGMSYFIKKLNWSDKIF----------QLGSHHKFDKEL  606 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-----------------~~~~~vavK~~~~~~~~~----------~~~~~~~~~~E~  606 (833)
                      .++|+..+.||+|+||.||+|..                 .+++.||||++.......          .....+.+..|+
T Consensus       144 ~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE~  223 (507)
T PLN03224        144 SDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVEA  223 (507)
T ss_pred             ccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHHH
Confidence            45788899999999999999964                 245789999985321110          011234466788


Q ss_pred             HHHhcCCCCCc-----ccceEEEec--------CCceEEEEeeCCCCChhhhhhcCC----------------------C
Q 003296          607 EVLGKLSNSNV-----MTPLAYVLA--------SDSAYLFYEYAPKGTLFDVLHGCL----------------------E  651 (833)
Q Consensus       607 ~~l~~l~H~ni-----v~~~~~~~~--------~~~~~lv~ey~~~g~L~~~l~~~~----------------------~  651 (833)
                      .++.+++|.++     +++++||..        ++..+|||||+++|+|.++++...                      .
T Consensus       224 ~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~  303 (507)
T PLN03224        224 YMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQ  303 (507)
T ss_pred             HHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhccc
Confidence            88888877665     677888764        356899999999999999997421                      1


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCcccccccccccccc
Q 003296          652 NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPP  731 (833)
Q Consensus       652 ~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aP  731 (833)
                      ..++|..+..++.|+++||+|+|   ..+|+||||||+||+++.++.+|++|||+++........ ......+|+.|+||
T Consensus       304 ~~~~~~~~~~i~~ql~~aL~~lH---~~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~-~~~~g~~tp~Y~aP  379 (507)
T PLN03224        304 DKRDINVIKGVMRQVLTGLRKLH---RIGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINF-NPLYGMLDPRYSPP  379 (507)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCchHhEEECCCCcEEEEeCcCccccccCCcc-CccccCCCcceeCh
Confidence            13578889999999999999999   778999999999999999999999999999765432211 11223458999999


Q ss_pred             ccccCCc--------------------cc--ccCcchhhHHHHHHHHhCCC-cccCCccHHHHHHHhhcccccccccccc
Q 003296          732 EYAYTMR--------------------VT--MAGNVYSFGVILLELLTGKT-AVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       732 E~~~~~~--------------------~~--~~~Dv~S~Gvvl~elltg~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      |.+....                    |.  .+.||||+||++|||++|.. ||.+........................
T Consensus       380 E~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r~~~~~  459 (507)
T PLN03224        380 EELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWRMYKGQ  459 (507)
T ss_pred             hhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHHhhccc
Confidence            9875322                    12  35799999999999999975 6643211111000000000000000000


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCC---CCCCCHHHHHHH
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSP---EARPKMKSVLRM  828 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP---~~Rps~~evl~~  828 (833)
                      ..  .............+++.+++..+|   .+|+|++|+++|
T Consensus       460 ~~--~~~~~d~~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~H  500 (507)
T PLN03224        460 KY--DFSLLDRNKEAGWDLACKLITKRDQANRGRLSVGQALSH  500 (507)
T ss_pred             CC--CcccccccChHHHHHHHHHhccCCCCcccCCCHHHHhCC
Confidence            00  001122335678899999999876   689999999976

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-33  Score=257.74  Aligned_cols=211  Identities=14%  Similarity=0.171  Sum_probs=171.1

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhc-CCCCCcccceEEEecCCceEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGK-LSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~-l~H~niv~~~~~~~~~~~~~l  632 (833)
                      ++......||+|+||.|-+-++ .+|+..|||++...-   ..+.+++..+|+.+..+ ...|.+|.+||.+..+...++
T Consensus        46 d~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tv---n~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwI  122 (282)
T KOG0984|consen   46 DDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATV---NSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWI  122 (282)
T ss_pred             hhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhc---ChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEE
Confidence            3444567899999999988886 689999999995221   23345778889988655 479999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcC--CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          633 FYEYAPKGTLFDVLHGC--LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      .||.|+- ||..+-++.  .+..+++...-+||..|.+||.|||+  ...|||||+||+|||++.+|++|+||||++..+
T Consensus       123 cME~M~t-Sldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~--kL~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L  199 (282)
T KOG0984|consen  123 CMELMDT-SLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHS--KLSVIHRDVKPSNILINYDGQVKICDFGISGYL  199 (282)
T ss_pred             eHHHhhh-hHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHH--HhhhhhccCCcceEEEccCCcEEEcccccceee
Confidence            9999975 777654431  24578999999999999999999997  668999999999999999999999999999887


Q ss_pred             CCCCCCCccccccccccccccccccC----CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHH
Q 003296          711 DPSKSTGSLSTVAGSVGYIPPEYAYT----MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLR  774 (833)
Q Consensus       711 ~~~~~~~~~~~~~gt~~y~aPE~~~~----~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~  774 (833)
                      ..+-.   .+..+|.-.|||||.+..    ..|+-|+||||+|+.+.||.+++.||+.+....+...+
T Consensus       200 ~dSiA---kt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~w~tpF~qLkq  264 (282)
T KOG0984|consen  200 VDSIA---KTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYESWGTPFQQLKQ  264 (282)
T ss_pred             hhhhH---HHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhccccccccCCHHHHHHH
Confidence            54321   123568889999998752    36999999999999999999999999866554444433

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=100.00  E-value=1e-32  Score=314.91  Aligned_cols=262  Identities=15%  Similarity=0.092  Sum_probs=171.1

Q ss_pred             HHHhcCCccccccCcccEEEEEEcC-C----CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEE----
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVMP-S----GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAY----  623 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~----~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~----  623 (833)
                      ..++|+..+.||+|+||.||+|++. +    +..||||++....      ..+.+..|  .+.+..+.+++.+...    
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~------~~e~~~~e--~l~~~~~~~~~~~~~~~~~~  201 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYG------AVEIWMNE--RVRRACPNSCADFVYGFLEP  201 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccc------hhHHHHHH--HHHhhchhhHHHHHHhhhcc
Confidence            3457888899999999999999974 5    7899999984211      11112222  1222223333333222    


Q ss_pred             --EecCCceEEEEeeCCCCChhhhhhcCCCC------------------CCCHHHHHHHHHHHHHHHHhhhcCCCCCeee
Q 003296          624 --VLASDSAYLFYEYAPKGTLFDVLHGCLEN------------------ALDWASRYSIAVGVAQGLAFLHGFTSNPILL  683 (833)
Q Consensus       624 --~~~~~~~~lv~ey~~~g~L~~~l~~~~~~------------------~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiH  683 (833)
                        +..++..++||||+++|+|.++++.....                  ...+..+..++.|++.||+|||   +.+|+|
T Consensus       202 ~~~~~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH---~~gIiH  278 (566)
T PLN03225        202 VSSKKEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLH---STGIVH  278 (566)
T ss_pred             cccccCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHH---HCCEEe
Confidence              23456799999999999999998753110                  0122345678999999999999   789999


Q ss_pred             cCCCccceeeCC-CCCceeccceeeeeeCCCCCCCccccccccccccccccccCC----------------------ccc
Q 003296          684 LDLSTRNIFLKS-LKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTM----------------------RVT  740 (833)
Q Consensus       684 rdlk~~Nill~~-~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~----------------------~~~  740 (833)
                      |||||+|||++. ++.+||+|||+|+....... .......||+.|||||.+...                      .++
T Consensus       279 RDLKP~NILl~~~~~~~KL~DFGlA~~l~~~~~-~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~  357 (566)
T PLN03225        279 RDVKPQNIIFSEGSGSFKIIDLGAAADLRVGIN-YIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLP  357 (566)
T ss_pred             CcCCHHHEEEeCCCCcEEEEeCCCccccccccc-cCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCC
Confidence            999999999985 57899999999986543321 122457899999999965321                      244


Q ss_pred             ccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccc---ccccccccc----CCchhHHHHHHHHHHHHHhccC
Q 003296          741 MAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL---DHILDFNVS----RTSLAVRSQMLTVLKVAVACVS  813 (833)
Q Consensus       741 ~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~l~~~cl~  813 (833)
                      .++|||||||++|||+++..|++.  ....+...........   .....+...    ..............+++.+|++
T Consensus       358 ~k~DVwSlGviL~el~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dLi~~mL~  435 (566)
T PLN03225        358 DRFDIYSAGLIFLQMAFPNLRSDS--NLIQFNRQLKRNDYDLVAWRKLVEPRASPDLRRGFEVLDLDGGAGWELLKSMMR  435 (566)
T ss_pred             CCcccHHHHHHHHHHHhCcCCCch--HHHHHHHHHHhcCCcHHHHHHhhccccchhhhhhhhhccccchHHHHHHHHHcc
Confidence            577999999999999998766542  2222211111110000   011111100    0000000112345689999999


Q ss_pred             CCCCCCCCHHHHHHH
Q 003296          814 VSPEARPKMKSVLRM  828 (833)
Q Consensus       814 ~dP~~Rps~~evl~~  828 (833)
                      .||++|||++|+++|
T Consensus       436 ~dP~kR~ta~e~L~H  450 (566)
T PLN03225        436 FKGRQRISAKAALAH  450 (566)
T ss_pred             CCcccCCCHHHHhCC
Confidence            999999999999986

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.98  E-value=1.3e-33  Score=308.79  Aligned_cols=246  Identities=23%  Similarity=0.277  Sum_probs=188.8

Q ss_pred             cCCccccccCcccE-EEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCCceEEEE
Q 003296          557 ANPLNVELKTRFST-YYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       557 ~~~~~~ig~g~~g~-vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~~~~lv~  634 (833)
                      |...+++|.|+-|+ ||+|.. .|+.||||++-.       .......+||..|+.-+ |||||++++.-.+++..||+.
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~-------e~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIal  582 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVY-EGREVAVKRLLE-------EFFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIAL  582 (903)
T ss_pred             eccHHHcccCCCCcEEEEEee-CCceehHHHHhh-------HhHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEe
Confidence            55678899998884 699998 688999999931       12234679999999884 999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCC-CCC-CCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC---C--CCceeccceee
Q 003296          635 EYAPKGTLFDVLHGCL-ENA-LDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS---L--KEPQIGDIELC  707 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~-~~~-l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~---~--~~~ki~dfgl~  707 (833)
                      |.|.. +|.+++.... ... ..-.....+..|+++||+|||   +.+|||||+||.||||+.   +  ..++|+|||++
T Consensus       583 ELC~~-sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLH---sl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfgls  658 (903)
T KOG1027|consen  583 ELCAC-SLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLH---SLKIVHRDLKPQNILISVPSADGTLRAKISDFGLS  658 (903)
T ss_pred             hHhhh-hHHHHHhccccchhhcccccHHHHHHHHHHHHHHHH---hcccccccCCCceEEEEccCCCcceeEEecccccc
Confidence            99966 9999998631 111 111234667899999999999   789999999999999975   3  47899999999


Q ss_pred             eeeCCCCCC-CccccccccccccccccccCCcccccCcchhhHHHHHHHHhC-CCcccCCccHHHHHHHhhccccccccc
Q 003296          708 KVIDPSKST-GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTG-KTAVNQGNELAKWVLRNSAQQDKLDHI  785 (833)
Q Consensus       708 ~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg-~~p~~~~~~~~~~~~~~~~~~~~~~~~  785 (833)
                      +.+..+... ....+..||-||+|||++...+-+.++||||+|||+|..++| ..||.+......-+..   ....+..+
T Consensus       659 Kkl~~~~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~R~~NIl~---~~~~L~~L  735 (903)
T KOG1027|consen  659 KKLAGGKSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLERQANILT---GNYTLVHL  735 (903)
T ss_pred             cccCCCcchhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchHHhhhhhhc---Cccceeee
Confidence            998765433 234568899999999999988888899999999999999997 8999743322111111   11111111


Q ss_pred             ccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          786 LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       786 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                           ..    ..++  ++.+||.+|+.+||..||++.+|+.|
T Consensus       736 -----~~----~~d~--eA~dLI~~ml~~dP~~RPsa~~VL~H  767 (903)
T KOG1027|consen  736 -----EP----LPDC--EAKDLISRMLNPDPQLRPSATDVLNH  767 (903)
T ss_pred             -----cc----CchH--HHHHHHHHhcCCCcccCCCHHHHhCC
Confidence                 00    0111  77899999999999999999999865

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.98  E-value=6.7e-32  Score=278.96  Aligned_cols=240  Identities=26%  Similarity=0.336  Sum_probs=193.7

Q ss_pred             cccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCCCCChhhh
Q 003296          567 RFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDV  645 (833)
Q Consensus       567 ~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~g~L~~~  645 (833)
                      +||.||+|+.. +|+.+|+|++......   ...+.|.+|++.+++++|+||+++++++......++||||+++++|.++
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~---~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~   77 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIK---KKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDL   77 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccc---cHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHH
Confidence            58999999986 5899999999532211   1157899999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCcccccccc
Q 003296          646 LHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGS  725 (833)
Q Consensus       646 l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt  725 (833)
                      +...  ..+++..+..++.++++|++|||   ..+++|+||+|+||++++++.++++|||.+.......   ......|+
T Consensus        78 ~~~~--~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~---~~~~~~~~  149 (244)
T smart00220       78 LKKR--GRLSEDEARFYARQILSALEYLH---SNGIIHRDLKPENILLDEDGHVKLADFGLARQLDPGG---LLTTFVGT  149 (244)
T ss_pred             HHhc--cCCCHHHHHHHHHHHHHHHHHHH---HcCeecCCcCHHHeEECCCCcEEEccccceeeecccc---ccccccCC
Confidence            9763  23899999999999999999999   7799999999999999999999999999998775432   22346788


Q ss_pred             ccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHH
Q 003296          726 VGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVL  805 (833)
Q Consensus       726 ~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  805 (833)
                      ..|+|||...+..++.++||||||+++||+++|..||...................           ..........++.
T Consensus       150 ~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~  218 (244)
T smart00220      150 PEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGDDQLLELFKKIGKPKPP-----------FPPPEWKISPEAK  218 (244)
T ss_pred             cCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhccCCC-----------CccccccCCHHHH
Confidence            99999999988888999999999999999999999997533333322221111000           0000000345788


Q ss_pred             HHHHhccCCCCCCCCCHHHHHHH
Q 003296          806 KVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       806 ~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      +++.+|+..+|++||++.|++++
T Consensus       219 ~~i~~~l~~~p~~Rp~~~~~~~~  241 (244)
T smart00220      219 DLIRKLLVKDPEKRLTAEEALQH  241 (244)
T ss_pred             HHHHHHccCCchhccCHHHHhhC
Confidence            99999999999999999999873

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.98  E-value=1.1e-36  Score=305.86  Aligned_cols=411  Identities=27%  Similarity=0.429  Sum_probs=240.6

Q ss_pred             CCCCCCCCEEECCCCCCCCcc-cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCE
Q 003296            4 CGGIDGLKLLNFSKNELVSLP-TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEE   82 (833)
Q Consensus         4 ~~~l~~L~~L~ls~N~l~~i~-~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~   82 (833)
                      +.++..|.+|++++|+++++| ++..+..++.|+.++|+++ ..|..+..+.+|+.|+.++|.+.. .|..++.+..|+.
T Consensus        64 l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~e-l~~~i~~~~~l~d  141 (565)
T KOG0472|consen   64 LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKE-LPDSIGRLLDLED  141 (565)
T ss_pred             hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceee-cCchHHHHhhhhh
Confidence            345566666677777666653 4555566666666666665 334455555666666666666552 3444555555555


Q ss_pred             EEccCCcCcccCCccccCCCCCCEEeccCCcCCc----------------------cCCccccCCCCCcEEECcCCcCCC
Q 003296           83 LVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSG----------------------SVPDRIGELSKLEVLILSANNLDG  140 (833)
Q Consensus        83 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~----------------------~~~~~~~~l~~L~~L~Ls~N~l~~  140 (833)
                      |+..+|+++ ..|.++.++.+|..|++.+|++..                      .+|..++.|.+|+.|+|..|+|. 
T Consensus       142 l~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-  219 (565)
T KOG0472|consen  142 LDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-  219 (565)
T ss_pred             hhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-
Confidence            555555555 344444444444444444444443                      34444555555555555555554 


Q ss_pred             CCCcccccCCccCccccccccccccCChhhh---hcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCC
Q 003296          141 RLPTSLASITTLSRFAANQNKFSGSVPGGIT---RFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS  217 (833)
Q Consensus       141 ~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~---~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~  217 (833)
                      ..| +|.++..|.+++++.|.+. .+|....   .++..|||.+|++. ..|+.++-+.+|++||+|+|.+++. |...+
T Consensus       220 ~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~L-p~sLg  295 (565)
T KOG0472|consen  220 FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSL-PYSLG  295 (565)
T ss_pred             cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccC-Ccccc
Confidence            233 4555555555555555443 3444443   23567778888776 4577777777788888888877754 33332


Q ss_pred             -cCCcEEEcCCccccC-------------------------------------CCCccccC---CCCCCCEEECCCCCCC
Q 003296          218 -PNLVRLRLGTNLLIG-------------------------------------EIPSATFT---SLEKLTYLELDNNSFT  256 (833)
Q Consensus       218 -~~L~~L~l~~n~l~~-------------------------------------~~~~~~f~---~l~~L~~L~L~~N~l~  256 (833)
                       -.|+.|.+.+|.+..                                     ..++..|.   .+.+.+.|+++.-+++
T Consensus       296 nlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt  375 (565)
T KOG0472|consen  296 NLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT  375 (565)
T ss_pred             cceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence             356666666665410                                     00111111   1335566777776666


Q ss_pred             CCCCccccCCC--CCcEEEccCCccCCCChhhhCCCCCCcE-EEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCcc
Q 003296          257 GMIPQQLGSCR--SLTLLNLAQNELNGSLPIQLGSLGILQV-MNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPS  333 (833)
Q Consensus       257 ~~~~~~~~~l~--~L~~L~L~~N~l~~~~p~~~~~l~~L~~-L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~  333 (833)
                      .++...|..-.  -.+..+++.|++. .+|..+..++.++. +.+++|.+ +.+|..++.+++|..|+|++|-+. .+|.
T Consensus       376 ~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~  452 (565)
T KOG0472|consen  376 LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPE  452 (565)
T ss_pred             cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcch
Confidence            44333333221  2667777888776 56666666655544 33444443 356666777777777777777776 5666


Q ss_pred             ccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCccCCCCccccc--ceeeccccccccchhhhhccCCCC
Q 003296          334 FLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQ--IALNLSSNLFEGPIPTTFARLNGL  411 (833)
Q Consensus       334 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~--~~L~Ls~N~l~~~~p~~~~~l~~L  411 (833)
                      .++.+..|+.|+++.|+|. .+|.....+..|+.+-.++|++....|.-...+.  ..|||.+|.+. .+|..++++++|
T Consensus       453 e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL  530 (565)
T KOG0472|consen  453 EMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNL  530 (565)
T ss_pred             hhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccce
Confidence            6777777777777777775 5666666666666666666777544333222222  46777777776 577889999999


Q ss_pred             CEEecccCcCccccchh
Q 003296          412 EVLDLSNNRFSGEIPQL  428 (833)
Q Consensus       412 ~~L~Ls~N~l~~~~p~~  428 (833)
                      ++|++++|.|. .++..
T Consensus       531 ~hLeL~gNpfr-~Pr~~  546 (565)
T KOG0472|consen  531 RHLELDGNPFR-QPRHQ  546 (565)
T ss_pred             eEEEecCCccC-CCHHH
Confidence            99999999998 44433

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.97  E-value=5.4e-32  Score=271.10  Aligned_cols=258  Identities=17%  Similarity=0.234  Sum_probs=202.8

Q ss_pred             HHhcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS  627 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~  627 (833)
                      ...+....++-+|.||.||+|.+.      +.+.|-||.++....   +-....|.+|.-.+..+.|||+.++.+.+.++
T Consensus       283 r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS---~iQv~~~L~es~lly~~sH~nll~V~~V~ie~  359 (563)
T KOG1024|consen  283 RCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHAS---QIQVNLLLQESMLLYGASHPNLLSVLGVSIED  359 (563)
T ss_pred             hhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhccc---HHHHHHHHHHHHHHhcCcCCCccceeEEEeec
Confidence            445667788899999999999763      346677887742221   22346789999999999999999999999765


Q ss_pred             -CceEEEEeeCCCCChhhhhhcCC------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCce
Q 003296          628 -DSAYLFYEYAPKGTLFDVLHGCL------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQ  700 (833)
Q Consensus       628 -~~~~lv~ey~~~g~L~~~l~~~~------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~k  700 (833)
                       +..+.+|.|+.-|+|..+|.-++      .+.++-.+...++.|++.|++|||   +.+|||.||..+|++||+..++|
T Consensus       360 ~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh---~~~ViHkDiAaRNCvIdd~LqVk  436 (563)
T KOG1024|consen  360 YATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLH---NHGVIHKDIAARNCVIDDQLQVK  436 (563)
T ss_pred             cCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHH---hcCcccchhhhhcceehhheeEE
Confidence             56889999999999999998432      235777788899999999999999   88999999999999999999999


Q ss_pred             eccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccc
Q 003296          701 IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQ  779 (833)
Q Consensus       701 i~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~  779 (833)
                      ++|-.+++-+-+.+..-.....-....||+||.+....|+.++|||||||++|||+| |+.|+.+-+..  .+.....++
T Consensus       437 ltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeIDPf--Em~~ylkdG  514 (563)
T KOG1024|consen  437 LTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDPF--EMEHYLKDG  514 (563)
T ss_pred             eccchhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccCHH--HHHHHHhcc
Confidence            999999987755443211112334678999999999999999999999999999998 89998754332  122333333


Q ss_pred             ccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          780 DKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                      .++.+            +..++.++..++.-||+.+|++||+.+|++.-|.+
T Consensus       515 yRlaQ------------P~NCPDeLf~vMacCWallpeeRPsf~Qlv~cLse  554 (563)
T KOG1024|consen  515 YRLAQ------------PFNCPDELFTVMACCWALLPEERPSFSQLVICLSE  554 (563)
T ss_pred             ceecC------------CCCCcHHHHHHHHHHHhcCcccCCCHHHHHHHHHH
Confidence            33222            12456688999999999999999999999988865

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.97  E-value=2.6e-32  Score=267.95  Aligned_cols=258  Identities=19%  Similarity=0.184  Sum_probs=201.3

Q ss_pred             cCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC------Cc
Q 003296          557 ANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS------DS  629 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~------~~  629 (833)
                      |.....+|.|+- .|.-|.+. .++.||+|++...  .......++..+|..++..++|+|||+++.+|...      ..
T Consensus        19 y~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~p--f~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e   95 (369)
T KOG0665|consen   19 YVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRP--FQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQE   95 (369)
T ss_pred             eeeecccCCCCc-eEEecchhhccCceehhhhcCc--cccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHh
Confidence            334556777776 55555543 7899999999533  23344567889999999999999999999999754      35


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                      .|+|||||.. +|.+.++-    .++-.+...|..|++.|+.|+|   +.+|+|||+||+||++..+..+||.|||+|+.
T Consensus        96 ~y~v~e~m~~-nl~~vi~~----elDH~tis~i~yq~~~~ik~lh---s~~IihRdLkPsnivv~~~~~lKi~dfg~ar~  167 (369)
T KOG0665|consen   96 VYLVMELMDA-NLCQVILM----ELDHETISYILYQMLCGIKHLH---SAGIIHRDLKPSNIVVNSDCTLKILDFGLART  167 (369)
T ss_pred             HHHHHHhhhh-HHHHHHHH----hcchHHHHHHHHHHHHHHHHHH---hcceeecccCcccceecchhheeeccchhhcc
Confidence            8999999965 99988873    4788888999999999999999   89999999999999999999999999999986


Q ss_pred             eCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc---
Q 003296          710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL---  786 (833)
Q Consensus       710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~---  786 (833)
                      ....   ..++..+.|..|.|||++.+..|.+.+||||.||++.||++|+.-|.+...+.+|......-+..-....   
T Consensus       168 e~~~---~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g~d~idQ~~ki~~~lgtpd~~F~~qL  244 (369)
T KOG0665|consen  168 EDTD---FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFPGKDHIDQWNKIIEQLGTPDPSFMKQL  244 (369)
T ss_pred             cCcc---cccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEecCchHHHHHHHHHHHhcCCCHHHHHHh
Confidence            5433   3557788999999999999988999999999999999999999999988888888654333211111110   


Q ss_pred             ------------------------cccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          787 ------------------------DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       787 ------------------------~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                                              |..+.......+.....+.+++.+||..||++|.+++++++|
T Consensus       245 ~~~~r~yv~~~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~H  310 (369)
T KOG0665|consen  245 QPTVRNYVENRPQYQAISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALRH  310 (369)
T ss_pred             hHHHHHHhhcChHhhccchhhhCCcccccccccCCccchHHHHHHHHHhhccChhhcccHHHHhcC
Confidence                                    000000001111223457889999999999999999999976

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=4.5e-34  Score=315.03  Aligned_cols=416  Identities=30%  Similarity=0.386  Sum_probs=247.4

Q ss_pred             CCEEECCCCCCCCcc--cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccC
Q 003296           10 LKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSG   87 (833)
Q Consensus        10 L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~   87 (833)
                      ++.|+++.|.+...|  .....-+|+.|||++|++. ..|..+..+.+|+.|+++.|.|.. .|.+..++.+|++|.|.+
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~-vp~s~~~~~~l~~lnL~~  100 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRS-VPSSCSNMRNLQYLNLKN  100 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHhh-Cchhhhhhhcchhheecc
Confidence            566777777776643  2334444777777777775 456666777777777777777773 556777777777777777


Q ss_pred             CcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCC
Q 003296           88 NAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVP  167 (833)
Q Consensus        88 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p  167 (833)
                      |.+. ..|.++..+.+|+.||+|+|++. .+|..+..++.++.+..++|......+.    .. .+.+++..|.+.+.++
T Consensus       101 n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~~-ik~~~l~~n~l~~~~~  173 (1081)
T KOG0618|consen  101 NRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ----TS-IKKLDLRLNVLGGSFL  173 (1081)
T ss_pred             chhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc----cc-chhhhhhhhhcccchh
Confidence            7776 66777777777777777777775 5666666666666666666621111111    11 4455555555555555


Q ss_pred             hhhhhcCCEEecccccccccCCccCCC--------------------CCCCCEEecccccCcccCCCCCCcCCcEEEcCC
Q 003296          168 GGITRFLRNLDLSYNKLLGVIPIDLLS--------------------HPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGT  227 (833)
Q Consensus       168 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~--------------------~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~  227 (833)
                      .++......|||.+|.+..   .++.+                    .++|+.|+.++|.++...+.....++++++++.
T Consensus       174 ~~i~~l~~~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~  250 (1081)
T KOG0618|consen  174 IDIYNLTHQLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISH  250 (1081)
T ss_pred             cchhhhheeeecccchhhh---hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecch
Confidence            4442222245555555541   11222                    244555555555555333333334566666666


Q ss_pred             ccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcC
Q 003296          228 NLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEI  307 (833)
Q Consensus       228 n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  307 (833)
                      |++++ +| .....+.+|+.++..+|+++ .+|..+....+|+.|...+|.++ -+|.....++.|+.|+|..|+|....
T Consensus       251 n~l~~-lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp  326 (1081)
T KOG0618|consen  251 NNLSN-LP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLP  326 (1081)
T ss_pred             hhhhc-ch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccc
Confidence            66654 44 45556666666666666664 33444444455555555555554 34444555666666666666665332


Q ss_pred             chhhc-------------------------CCCcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccCccccCC
Q 003296          308 PSQFS-------------------------QLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNM  362 (833)
Q Consensus       308 p~~~~-------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  362 (833)
                      +..|.                         .++.|+.|.+.+|.++...-..+.+..+|+.|+|++|++.......+.++
T Consensus       327 ~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kl  406 (1081)
T KOG0618|consen  327 DNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKL  406 (1081)
T ss_pred             hHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhch
Confidence            22221                         23446666666777766555566667777777777777764444456677


Q ss_pred             CCCCEEEccCCcCCccCCCCccccc--ceeeccccccccchhhhhccCCCCCEEecccCcCccccchhccCCCCCCeeeC
Q 003296          363 RSLIELQLGGNQLSGTIPMMPPRLQ--IALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLL  440 (833)
Q Consensus       363 ~~L~~L~L~~N~l~~~~p~~~~~~~--~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  440 (833)
                      ..|++|+||+|+++ .+|.....+.  .+|...+|++. ..| .+..++.|+++|+|.|+++...-..-...++|++||+
T Consensus       407 e~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdl  483 (1081)
T KOG0618|consen  407 EELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDL  483 (1081)
T ss_pred             HHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeec
Confidence            77777777777776 3443322222  45666677776 455 6777788888888888776543222222367888888


Q ss_pred             cCCc
Q 003296          441 TNNQ  444 (833)
Q Consensus       441 s~N~  444 (833)
                      ++|.
T Consensus       484 SGN~  487 (1081)
T KOG0618|consen  484 SGNT  487 (1081)
T ss_pred             cCCc
Confidence            8876

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=2.8e-32  Score=254.45  Aligned_cols=256  Identities=15%  Similarity=0.181  Sum_probs=196.2

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecC--Cce
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLAS--DSA  630 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~--~~~  630 (833)
                      ++|+..+.+|+|.|+.||.|.. .+.+.++||.++..+       .+...+|++||..++ |||||++++...++  ...
T Consensus        38 ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVk-------kkKIkREikIL~nL~gg~NIi~L~DiV~Dp~Sktp  110 (338)
T KOG0668|consen   38 DDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPVK-------KKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTP  110 (338)
T ss_pred             chHHHHHHHcCccHhhHhcccccCCCceEEEeeechHH-------HHHHHHHHHHHHhccCCCCeeehhhhhcCccccCc
Confidence            3566678899999999999984 678999999995332       367899999999998 99999999999876  457


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC-CCCceeccceeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS-LKEPQIGDIELCKV  709 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~-~~~~ki~dfgl~~~  709 (833)
                      .||+||+.+-|...+-.     .++...+..++.++++||.|+|   ++||+|||+||.|+++|. ....+++|+|+|.+
T Consensus       111 aLiFE~v~n~Dfk~ly~-----tl~d~dIryY~~elLkALdyCH---S~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEF  182 (338)
T KOG0668|consen  111 SLIFEYVNNTDFKQLYP-----TLTDYDIRYYIYELLKALDYCH---SMGIMHRDVKPHNVMIDHELRKLRLIDWGLAEF  182 (338)
T ss_pred             hhHhhhhccccHHHHhh-----hhchhhHHHHHHHHHHHHhHHH---hcCcccccCCcceeeechhhceeeeeecchHhh
Confidence            89999999988776654     3777788889999999999999   899999999999999995 46789999999998


Q ss_pred             eCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCccc-CCccHHHHHHHhhcccc-------
Q 003296          710 IDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVN-QGNELAKWVLRNSAQQD-------  780 (833)
Q Consensus       710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~-~~~~~~~~~~~~~~~~~-------  780 (833)
                      ..++...   ...+.+..|.-||.+.. ..|+..-|+|||||++.+|+..+.||. +.....+.+.....-+.       
T Consensus       183 YHp~~eY---nVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl  259 (338)
T KOG0668|consen  183 YHPGKEY---NVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYL  259 (338)
T ss_pred             cCCCcee---eeeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHH
Confidence            7665432   44567888999998765 458999999999999999999999986 33444444332211100       


Q ss_pred             -cccccccccc--------cCCc------hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          781 -KLDHILDFNV--------SRTS------LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       781 -~~~~~~~~~~--------~~~~------~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                       ...-.+|+..        +...      ....-..+++++++.+.+..|.++|||++|++.|
T Consensus       260 ~KY~i~Ldp~~~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqeRlTakEam~H  322 (338)
T KOG0668|consen  260 NKYQIDLDPQFEDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQERLTAKEAMAH  322 (338)
T ss_pred             HHHccCCChhHhhHhhccccccHHHhCCccccccCChHHHHHHHHHHhhccccccchHHHhcC
Confidence             0000122211        1000      0001124688999999999999999999998865

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=9.3e-34  Score=298.13  Aligned_cols=341  Identities=25%  Similarity=0.374  Sum_probs=195.0

Q ss_pred             CCCCCCCCEEECCCCCCCC--ccc-ccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCC
Q 003296            4 CGGIDGLKLLNFSKNELVS--LPT-FNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKAL   80 (833)
Q Consensus         4 ~~~l~~L~~L~ls~N~l~~--i~~-f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L   80 (833)
                      -|-|+-.+-.|+|+|.+++  .|. ...+++++.|-|...++.. .|+.++.|.+|+.|.+++|++.. +-+.++.++.|
T Consensus         3 tgVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~L   80 (1255)
T KOG0444|consen    3 TGVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRL   80 (1255)
T ss_pred             ccccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhh
Confidence            4556777788899999885  563 6678888888888888874 56778888899999999998874 45677888888


Q ss_pred             CEEEccCCcCcc-cCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCcccccc
Q 003296           81 EELVLSGNAFHG-EIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQ  159 (833)
Q Consensus        81 ~~L~L~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~  159 (833)
                      +.+++..|++.. -+|..+..|..|++||||+|+++ ..|..+..-+++-+|+||+|+|..+...-|.+++.|-.|++++
T Consensus        81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~  159 (1255)
T KOG0444|consen   81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN  159 (1255)
T ss_pred             HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence            899998888754 46777888888999999999887 6788888888888899999988866555666776666666665


Q ss_pred             ccccccCChhh--hhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCcc
Q 003296          160 NKFSGSVPGGI--TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSA  237 (833)
Q Consensus       160 n~l~~~~p~~~--~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~  237 (833)
                      |++. .+|+.+  +.+|++|+|++|.+....-..+..++.|+.|.+++.+=+-                     ..+ +.
T Consensus       160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl---------------------~N~-Pt  216 (1255)
T KOG0444|consen  160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL---------------------DNI-PT  216 (1255)
T ss_pred             chhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh---------------------hcC-CC
Confidence            5554 223222  2234444444444332221222223333333333322110                     011 12


Q ss_pred             ccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcC
Q 003296          238 TFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLL  317 (833)
Q Consensus       238 ~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  317 (833)
                      ++.++.+|..+|||.|.+. ..|..+-++++|+.|+||+|+|+ .+....+.-.+|+.|+||.|+++ ..|+.+..++.|
T Consensus       217 sld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL  293 (1255)
T KOG0444|consen  217 SLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKL  293 (1255)
T ss_pred             chhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHH
Confidence            3334444444444444444 33444444444444444444443 22222222334444444444444 334444444444


Q ss_pred             ceeeccCCcCc-ccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCc
Q 003296          318 STMNISWNSLS-GSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQ  374 (833)
Q Consensus       318 ~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~  374 (833)
                      +.|.+.+|+++ .-+|+.++.+.+|+.+..++|++. ..|+.++.+..|+.|.|+.|+
T Consensus       294 ~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~Nr  350 (1255)
T KOG0444|consen  294 TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNR  350 (1255)
T ss_pred             HHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccc
Confidence            44444444443 123444444444444444444443 344444444444444444443

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=5.9e-33  Score=265.19  Aligned_cols=262  Identities=19%  Similarity=0.256  Sum_probs=199.4

Q ss_pred             CccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC-----CceEE
Q 003296          559 PLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS-----DSAYL  632 (833)
Q Consensus       559 ~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~-----~~~~l  632 (833)
                      ..+-||-|+||.||..+++ +|+.||.|++..  -.......+.+.+|+++|.-++|.|+...++..+..     ++.|.
T Consensus        57 PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pn--vfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV  134 (449)
T KOG0664|consen   57 PDRPIGYGAFGVVWSVTDPRSGKRVALKKMPN--VFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYV  134 (449)
T ss_pred             CCCcccccceeEEEeccCCCCccchhHhhcch--HHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHH
Confidence            4578999999999999985 899999999842  222334567899999999999999999999887754     36789


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      |.|.|.. ||...+-.  ...++-...+-+..||.+||.|||   +.+|.||||||.|.|++++...||+|||+|+..+.
T Consensus       135 ~TELmQS-DLHKIIVS--PQ~Ls~DHvKVFlYQILRGLKYLH---sA~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~  208 (449)
T KOG0664|consen  135 LTELMQS-DLHKIIVS--PQALTPDHVKVFVYQILRGLKYLH---TANILHRDIKPGNLLVNSNCILKICDFGLARTWDQ  208 (449)
T ss_pred             HHHHHHh-hhhheecc--CCCCCcchhhhhHHHHHhhhHHHh---hcchhhccCCCccEEeccCceEEecccccccccch
Confidence            9999965 88888765  456888888889999999999999   88999999999999999999999999999998765


Q ss_pred             CCCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHh--hc----------cc
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRN--SA----------QQ  779 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~--~~----------~~  779 (833)
                      .+.. .++..+-|.+|.|||++.+. .|+.+.||||.|||+.|++-++.-|...+.+.+.-...  ..          .+
T Consensus       209 d~~~-hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq~PiqQL~lItdLLGTPs~EaMr~ACE  287 (449)
T KOG0664|consen  209 RDRL-NMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAAGPIEQLQMIIDLLGTPSQEAMKYACE  287 (449)
T ss_pred             hhhh-hhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhccChHHHHHHHHHHhCCCcHHHHHHHhh
Confidence            5543 45566779999999999875 59999999999999999999988887655544321111  00          00


Q ss_pred             ccccccccccccCCch-------hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Q 003296          780 DKLDHILDFNVSRTSL-------AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML  829 (833)
Q Consensus       780 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L  829 (833)
                      +....++....+.+..       .....-.+...+...++..||++|.+..+.+.++
T Consensus       288 GAk~H~LR~~~k~Ps~~vLYtlsS~~~~~heav~~~~~~l~~d~dkris~~~A~~~~  344 (449)
T KOG0664|consen  288 GAKNHVLRAGLRAPDTQRLYKIASPDDKNHEAVDLLQKLLHFDPDKRISVEEALQHR  344 (449)
T ss_pred             hhHHHhhccCCCCCCccceeeecCCcccchHHHHHHHHHhCCCCcccccHhhhcccc
Confidence            1111122111111100       0011123566788899999999999999988764

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.4e-33  Score=295.05  Aligned_cols=367  Identities=27%  Similarity=0.379  Sum_probs=276.7

Q ss_pred             CCCCCEEECCCCCCC-CcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 003296           29 FAGLEVLDFSSNNLN-GNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLI  107 (833)
Q Consensus        29 l~~L~~L~Ls~N~l~-~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  107 (833)
                      ++-.+-.|+++|.++ +-.|.....+++++.|.|...++. .+|+.++.+.+|+.|.+++|++. .+...++.|+.|+.+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV   83 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence            344566889999998 567888888999999999999987 57889999999999999999988 556778889999999


Q ss_pred             eccCCcCC-ccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhc---CCEEeccccc
Q 003296          108 DLSANNLS-GSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRF---LRNLDLSYNK  183 (833)
Q Consensus       108 ~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~---L~~L~Ls~N~  183 (833)
                      ++.+|++. +-+|..+-.|..|..||||+|+++ ..|..+..-+++-.|++++|+|. .+|..++.+   |-.||||+|+
T Consensus        84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence            99999985 235666778999999999999998 57777777777777777777765 455555333   4456677776


Q ss_pred             ccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCC-CCCCcc
Q 003296          184 LLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFT-GMIPQQ  262 (833)
Q Consensus       184 l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~-~~~~~~  262 (833)
                      +.. +|.....+.+|++|+|++|.+..                       ..-..+.++++|+.|.+++.+-+ ..+|.+
T Consensus       162 Le~-LPPQ~RRL~~LqtL~Ls~NPL~h-----------------------fQLrQLPsmtsL~vLhms~TqRTl~N~Pts  217 (1255)
T KOG0444|consen  162 LEM-LPPQIRRLSMLQTLKLSNNPLNH-----------------------FQLRQLPSMTSLSVLHMSNTQRTLDNIPTS  217 (1255)
T ss_pred             hhh-cCHHHHHHhhhhhhhcCCChhhH-----------------------HHHhcCccchhhhhhhcccccchhhcCCCc
Confidence            653 34455566666677776665531                       11112335778888888876643 357888


Q ss_pred             ccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCC
Q 003296          263 LGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLV  342 (833)
Q Consensus       263 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  342 (833)
                      +.++.+|..+|||.|.+. .+|..+..+.+|+.|+||+|+|+.. ........+|++|+||.|+++ .+|+.+..+++|+
T Consensus       218 ld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~  294 (1255)
T KOG0444|consen  218 LDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLT  294 (1255)
T ss_pred             hhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHH
Confidence            888999999999999987 7888888899999999999998843 344556678889999999988 6888888899999


Q ss_pred             EEEccCCcccc-ccCccccCCCCCCEEEccCCcCCccCCCCcccccceeeccccccccchhhhhccCCCCCEEecccCcC
Q 003296          343 NLNLRQNNLNG-SIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRF  421 (833)
Q Consensus       343 ~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  421 (833)
                      .|.+.+|+++- -+|..++.+.+|+.+..++|.+.                       ..|..+..+..|+.|.|+.|++
T Consensus       295 kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-----------------------lVPEglcRC~kL~kL~L~~NrL  351 (1255)
T KOG0444|consen  295 KLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-----------------------LVPEGLCRCVKLQKLKLDHNRL  351 (1255)
T ss_pred             HHHhccCcccccCCccchhhhhhhHHHHhhccccc-----------------------cCchhhhhhHHHHHhcccccce
Confidence            99999988863 46888888888888888888775                       4566666777777777777777


Q ss_pred             ccccchhccCCCCCCeeeCcCCcccccCC
Q 003296          422 SGEIPQLLAQMPTLTQLLLTNNQLSGVVP  450 (833)
Q Consensus       422 ~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  450 (833)
                      . ..|+.+--++.|..||+..|+=-..+|
T Consensus       352 i-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  352 I-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             e-echhhhhhcCCcceeeccCCcCccCCC
Confidence            5 467777777777777777776443333

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.96  E-value=3.8e-31  Score=281.92  Aligned_cols=252  Identities=17%  Similarity=0.218  Sum_probs=198.9

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+....+|.|+||.|||+++ .+|...|||.++    .....+.+-..+|+-+++..+|||||.++|.|...+..|++
T Consensus        15 ddyellqrvgsgTygdvyKaRd~~s~elaavkvVk----Lep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwic   90 (829)
T KOG0576|consen   15 DDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVK----LEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWIC   90 (829)
T ss_pred             cchhheeeecCCcccchhhhcccccCchhhheeee----ccCCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEE
Confidence            4566778999999999999997 589999999994    22223445677899999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||||.+|+|++.-+.  .+++++.++..+++...+|++|||   +.+-+|||||-.|||+++.|.+|++|||.+..+...
T Consensus        91 MEycgggslQdiy~~--TgplselqiayvcRetl~gl~ylh---s~gk~hRdiKGanilltd~gDvklaDfgvsaqitat  165 (829)
T KOG0576|consen   91 MEYCGGGSLQDIYHV--TGPLSELQIAYVCRETLQGLKYLH---SQGKIHRDIKGANILLTDEGDVKLADFGVSAQITAT  165 (829)
T ss_pred             EEecCCCcccceeee--cccchhHHHHHHHhhhhccchhhh---cCCcccccccccceeecccCceeecccCchhhhhhh
Confidence            999999999998876  567999999999999999999999   778899999999999999999999999998765432


Q ss_pred             CCCCcccccccccccccccccc---CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAY---TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                      -.  ....+.||++|||||+..   .+.|..++|||+.|+...|+-.-++|-.+-..+........ ........-|   
T Consensus       166 i~--KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfdlhpmr~l~LmTk-S~~qpp~lkD---  239 (829)
T KOG0576|consen  166 IA--KRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDLHPMRALFLMTK-SGFQPPTLKD---  239 (829)
T ss_pred             hh--hhhcccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCcccccchHHHHHHhhc-cCCCCCcccC---
Confidence            21  224688999999999864   45699999999999999999888888543332222221111 1011111111   


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLR  827 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~  827 (833)
                            .......+-+++..|+-++|++||+++..++
T Consensus       240 ------k~kws~~fh~fvK~altknpKkRptaeklL~  270 (829)
T KOG0576|consen  240 ------KTKWSEFFHNFVKGALTKNPKKRPTAEKLLQ  270 (829)
T ss_pred             ------CccchHHHHHHHHHHhcCCCccCCChhhhee
Confidence                  1123445668899999999999999987765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=1.8e-32  Score=302.49  Aligned_cols=420  Identities=28%  Similarity=0.328  Sum_probs=296.9

Q ss_pred             CCCEEECCCCCCCCcc-cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccC
Q 003296            9 GLKLLNFSKNELVSLP-TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSG   87 (833)
Q Consensus         9 ~L~~L~ls~N~l~~i~-~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~   87 (833)
                      +|+.||+|+|++...| .+..+.+|+.|+++.|.|... |.+..++.+|++|+|.+|.+. ..|..+..+++|+.|++++
T Consensus        46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~v-p~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~  123 (1081)
T KOG0618|consen   46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSV-PSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSF  123 (1081)
T ss_pred             eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhC-chhhhhhhcchhheeccchhh-cCchhHHhhhcccccccch
Confidence            3999999999999987 478889999999999999854 578899999999999999998 6899999999999999999


Q ss_pred             CcCcccCCccccCCCCCCEEeccCC-------------------cCCccCCccccCCCCCcEEECcCCcCCCCCCccccc
Q 003296           88 NAFHGEIPKGIADYRNLTLIDLSAN-------------------NLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLAS  148 (833)
Q Consensus        88 N~l~~~~p~~~~~l~~L~~L~Ls~N-------------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  148 (833)
                      |.+. .+|..+..++.+..++.++|                   .+.+.++.++..+..  .|+|.+|.+...   .+.+
T Consensus       124 N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~---dls~  197 (1081)
T KOG0618|consen  124 NHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL---DLSN  197 (1081)
T ss_pred             hccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhh---hhhh
Confidence            9997 66766666655555555555                   444444444444444  577777776521   2233


Q ss_pred             CCccCc--------------------cccccccccccCChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccC
Q 003296          149 ITTLSR--------------------FAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNML  208 (833)
Q Consensus       149 l~~L~~--------------------l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l  208 (833)
                      +.+|+.                    |+...|.++...+......|+++|+++|++++. |.++..+.+|+.|+..+|++
T Consensus       198 ~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~l  276 (1081)
T KOG0618|consen  198 LANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNL-PEWIGACANLEALNANHNRL  276 (1081)
T ss_pred             ccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcc-hHHHHhcccceEecccchhH
Confidence            333333                    333444444333333334566666666666643 36666666666666666666


Q ss_pred             cccCCCCCC--cCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCC-CcEEEccCCccCCCChh
Q 003296          209 EGSLPQNMS--PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRS-LTLLNLAQNELNGSLPI  285 (833)
Q Consensus       209 ~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~p~  285 (833)
                      + .+|..+.  .+|+.|.+..|.+.- +|+ ....++.|+.|||..|+|....+..|..+.. |+.|+.+.|++......
T Consensus       277 ~-~lp~ri~~~~~L~~l~~~~nel~y-ip~-~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~  353 (1081)
T KOG0618|consen  277 V-ALPLRISRITSLVSLSAAYNELEY-IPP-FLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY  353 (1081)
T ss_pred             H-hhHHHHhhhhhHHHHHhhhhhhhh-CCC-cccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccc
Confidence            4 3333332  456666666666542 332 3344667777777777776555544444443 66666666766533322


Q ss_pred             hhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccCccccCCCCC
Q 003296          286 QLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSL  365 (833)
Q Consensus       286 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  365 (833)
                      .=.....|+.|++.+|.++...-+.+.+.++|+.|+|++|++.......+.++..|+.|+||+|+++ .+|+++.+++.|
T Consensus       354 ~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L  432 (1081)
T KOG0618|consen  354 EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRL  432 (1081)
T ss_pred             cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhh
Confidence            2234567899999999999888888999999999999999999665567889999999999999998 788999999999


Q ss_pred             CEEEccCCcCCccCCCCc-ccccceeeccccccccch-hhhhccCCCCCEEecccCcCccccchhccCCCCCCeeeCcCC
Q 003296          366 IELQLGGNQLSGTIPMMP-PRLQIALNLSSNLFEGPI-PTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNN  443 (833)
Q Consensus       366 ~~L~L~~N~l~~~~p~~~-~~~~~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N  443 (833)
                      ++|...+|++. .+|... ....+.+|+|.|+++... |... .-++|++|||++|.=....-..|..+.++...+++-|
T Consensus       433 ~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  433 HTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             HHHhhcCCcee-echhhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            99999999997 445322 223378999999998653 3333 3379999999999744345566777777777777766

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.96  E-value=1.5e-28  Score=247.87  Aligned_cols=212  Identities=29%  Similarity=0.414  Sum_probs=183.0

Q ss_pred             cccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCCCCC
Q 003296          563 ELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGT  641 (833)
Q Consensus       563 ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~g~  641 (833)
                      ||+|++|.||++... +|+.+++|+........   ..+.+.+|++.+++++|++|+++++++...+..++||||+++++
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~---~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~   77 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSS---LLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGS   77 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchh---HHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCc
Confidence            689999999999985 49999999995322110   24679999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC-CCCceeccceeeeeeCCCCCCCccc
Q 003296          642 LFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS-LKEPQIGDIELCKVIDPSKSTGSLS  720 (833)
Q Consensus       642 L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~-~~~~ki~dfgl~~~~~~~~~~~~~~  720 (833)
                      |.+++.... ..+++..+..++.+++++++|||   ..+++|+||+|.||+++. ++.++++|||.+........  ...
T Consensus        78 l~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lh---~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~--~~~  151 (215)
T cd00180          78 LKDLLKENE-GKLSEDEILRILLQILEGLEYLH---SNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKS--LLK  151 (215)
T ss_pred             HHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcc--hhh
Confidence            999997532 46899999999999999999999   779999999999999998 89999999999987643321  123


Q ss_pred             cccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHH
Q 003296          721 TVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRS  799 (833)
Q Consensus       721 ~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  799 (833)
                      ...+...|++||..... .++.++|+|++|++++|+                                            
T Consensus       152 ~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l--------------------------------------------  187 (215)
T cd00180         152 TIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL--------------------------------------------  187 (215)
T ss_pred             cccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH--------------------------------------------
Confidence            45678899999998876 788999999999999999                                            


Q ss_pred             HHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Q 003296          800 QMLTVLKVAVACVSVSPEARPKMKSVLRML  829 (833)
Q Consensus       800 ~~~~~~~l~~~cl~~dP~~Rps~~evl~~L  829 (833)
                        .++.+++.+|++.+|++||++.|+++++
T Consensus       188 --~~~~~~l~~~l~~~p~~R~~~~~l~~~~  215 (215)
T cd00180         188 --PELKDLIRKMLQKDPEKRPSAKEILEHL  215 (215)
T ss_pred             --HHHHHHHHHHhhCCcccCcCHHHHhhCC
Confidence              3567889999999999999999998764

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.96  E-value=5e-30  Score=268.87  Aligned_cols=199  Identities=18%  Similarity=0.239  Sum_probs=170.2

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhc-----cChhHHHHHHHHHhcCC---CCCcccceEEEe
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQL-----GSHHKFDKELEVLGKLS---NSNVMTPLAYVL  625 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~-----~~~~~~~~E~~~l~~l~---H~niv~~~~~~~  625 (833)
                      .+|.....+|+|+||.|..|.++ +...|+||.+. +.+....     ...-..-.||+||+.++   |+||++++++|+
T Consensus       561 s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~-KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFE  639 (772)
T KOG1152|consen  561 SDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIF-KERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFE  639 (772)
T ss_pred             ccceeeeeccccccceEEEeeecccceEEEeeehh-hhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheee
Confidence            35778899999999999999985 57889999984 3333211     11123567999999998   999999999999


Q ss_pred             cCCceEEEEeeC-CCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccc
Q 003296          626 ASDSAYLFYEYA-PKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDI  704 (833)
Q Consensus       626 ~~~~~~lv~ey~-~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~df  704 (833)
                      +++.+||+||-- ++-||++++.-  +..+++.++.-|+.||+.|+++||   +.+|||||||-+||.+|.+|-+|++||
T Consensus       640 ddd~yyl~te~hg~gIDLFd~IE~--kp~m~E~eAk~IFkQV~agi~hlh---~~~ivhrdikdenvivd~~g~~klidf  714 (772)
T KOG1152|consen  640 DDDYYYLETEVHGEGIDLFDFIEF--KPRMDEPEAKLIFKQVVAGIKHLH---DQGIVHRDIKDENVIVDSNGFVKLIDF  714 (772)
T ss_pred             cCCeeEEEecCCCCCcchhhhhhc--cCccchHHHHHHHHHHHhcccccc---ccCceecccccccEEEecCCeEEEeec
Confidence            999999999964 46699999986  456999999999999999999999   889999999999999999999999999


Q ss_pred             eeeeeeCCCCCCCccccccccccccccccccCCccc-ccCcchhhHHHHHHHHhCCCccc
Q 003296          705 ELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVT-MAGNVYSFGVILLELLTGKTAVN  763 (833)
Q Consensus       705 gl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~S~Gvvl~elltg~~p~~  763 (833)
                      |-|.....+    ...+++||.+|.|||++.+.+|- ..-|||++||+||.++....||.
T Consensus       715 gsaa~~ksg----pfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyy  770 (772)
T KOG1152|consen  715 GSAAYTKSG----PFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYY  770 (772)
T ss_pred             cchhhhcCC----CcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCc
Confidence            988765332    33578999999999999999985 67999999999999999999985

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.96  E-value=2.2e-29  Score=260.71  Aligned_cols=268  Identities=19%  Similarity=0.177  Sum_probs=204.4

Q ss_pred             hHHHHHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCC------CCcccc
Q 003296          548 DFTKAMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSN------SNVMTP  620 (833)
Q Consensus       548 ~~~~~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H------~niv~~  620 (833)
                      .+.+.....|......|+|-|++|.+|.+. .|+.||||++... ..    ..+.=.+|++||++|+.      -|++++
T Consensus       425 ~igE~LD~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnN-E~----M~KtGl~EleiLkKL~~AD~Edk~Hclrl  499 (752)
T KOG0670|consen  425 RIGELLDSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNN-EV----MHKTGLKELEILKKLNDADPEDKFHCLRL  499 (752)
T ss_pred             ehhhhhcceeEEEeccccceeeeeeeccccCCCCeeEEEEeecc-hH----HhhhhhHHHHHHHHhhccCchhhhHHHHH
Confidence            344455677888889999999999999974 6889999999432 21    23445789999999952      489999


Q ss_pred             eEEEecCCceEEEEeeCCCCChhhhhhcCCC-CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC-C
Q 003296          621 LAYVLASDSAYLFYEYAPKGTLFDVLHGCLE-NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK-E  698 (833)
Q Consensus       621 ~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~-~  698 (833)
                      +-.|...+++|||+|-+.- +|.++|++.+. ..|.......++.|+.-||..|-   ..+|+|.||||.|||+.+.. .
T Consensus       500 ~r~F~hknHLClVFE~Lsl-NLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK---~c~vlHaDIKPDNiLVNE~k~i  575 (752)
T KOG0670|consen  500 FRHFKHKNHLCLVFEPLSL-NLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLK---KCGVLHADIKPDNILVNESKNI  575 (752)
T ss_pred             HHHhhhcceeEEEehhhhc-hHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHH---hcCeeecccCccceEeccCcce
Confidence            9999999999999998754 99999987543 36788888999999999999999   88999999999999998654 5


Q ss_pred             ceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc--HHHHHHHhh
Q 003296          699 PQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE--LAKWVLRNS  776 (833)
Q Consensus       699 ~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~--~~~~~~~~~  776 (833)
                      .|+||||-|......+.    +.+.-+..|.|||++.+-+|+...|+||.||.|||+.||+..|.+...  +..+.+...
T Consensus       576 LKLCDfGSA~~~~enei----tPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~TNN~MLrl~me~K  651 (752)
T KOG0670|consen  576 LKLCDFGSASFASENEI----TPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGRTNNQMLRLFMELK  651 (752)
T ss_pred             eeeccCccccccccccc----cHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCCCcHHHHHHHHHhc
Confidence            79999999987765543    234456789999999999999999999999999999999999985432  222221111


Q ss_pred             c--------ccccccccccccc----------------------cC-------------CchhHHHHHHHHHHHHHhccC
Q 003296          777 A--------QQDKLDHILDFNV----------------------SR-------------TSLAVRSQMLTVLKVAVACVS  813 (833)
Q Consensus       777 ~--------~~~~~~~~~~~~~----------------------~~-------------~~~~~~~~~~~~~~l~~~cl~  813 (833)
                      .        .+...+..+|..+                      .+             .+........++.+|+.+|+.
T Consensus       652 Gk~p~KmlRKgqF~dqHFD~d~nf~~~e~D~vT~r~~~~vm~~vkPtkdl~s~l~~~q~~~deq~~~~~~~rdLLdkml~  731 (752)
T KOG0670|consen  652 GKFPNKMLRKGQFKDQHFDQDLNFLYIEVDKVTEREKRTVMVNVKPTKDLGSELIAVQRLPDEQPKIVQQLRDLLDKMLI  731 (752)
T ss_pred             CCCcHHHhhhcchhhhhcccccceEEEeccccccceeEEEecccCcchhHHHHHhccCCCCchhHHHHHHHHHHHHHHhc
Confidence            0        0111111111110                      00             111223456788999999999


Q ss_pred             CCCCCCCCHHHHHHH
Q 003296          814 VSPEARPKMKSVLRM  828 (833)
Q Consensus       814 ~dP~~Rps~~evl~~  828 (833)
                      .||++|.|..|+++|
T Consensus       732 LdP~KRit~nqAL~H  746 (752)
T KOG0670|consen  732 LDPEKRITVNQALKH  746 (752)
T ss_pred             cChhhcCCHHHHhcC
Confidence            999999999999876

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.95  E-value=1.8e-30  Score=261.16  Aligned_cols=415  Identities=22%  Similarity=0.262  Sum_probs=303.2

Q ss_pred             CEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccC-Cc
Q 003296           11 KLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSG-NA   89 (833)
Q Consensus        11 ~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~   89 (833)
                      ...++++-.|++||+ .-.+....++|..|+|+.+.+.+|+.+++|+.||||+|+|+.+-|.+|.++++|.+|-+.+ |+
T Consensus        49 ~~VdCr~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk  127 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK  127 (498)
T ss_pred             ceEEccCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence            467999999999996 4456788899999999999999999999999999999999999999999999999888888 99


Q ss_pred             CcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChh
Q 003296           90 FHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGG  169 (833)
Q Consensus        90 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~  169 (833)
                      |+.+..+.|.+|..|+.|.+.-|++.-+..+.|..|++|..|.|..|.+..+.-.+|..+..++.+.+..|.+...    
T Consensus       128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd----  203 (498)
T KOG4237|consen  128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD----  203 (498)
T ss_pred             hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc----
Confidence            9988888999999999999999999999999999999999999999999987777999999999999988875321    


Q ss_pred             hhhcCCEE--ecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEE---EcCCccccCCCCccccCCCCC
Q 003296          170 ITRFLRNL--DLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRL---RLGTNLLIGEIPSATFTSLEK  244 (833)
Q Consensus       170 ~~~~L~~L--~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L---~l~~n~l~~~~~~~~f~~l~~  244 (833)
                        .+|+.+  ++..      .|..+....-..-..+.++++..+-+..+.-.++.+   ..+.......-|...|..+++
T Consensus       204 --CnL~wla~~~a~------~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~  275 (498)
T KOG4237|consen  204 --CNLPWLADDLAM------NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPN  275 (498)
T ss_pred             --cccchhhhHHhh------chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhccc
Confidence              112221  1111      122233333333333444444333222222122111   112222344556678999999


Q ss_pred             CCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccC
Q 003296          245 LTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISW  324 (833)
Q Consensus       245 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  324 (833)
                      |+.|+|++|+|+.+.+.+|.++..++.|.|..|+|...-...|.++..|+.|+|.+|+|+...|..|..+.+|.+|+|-.
T Consensus       276 L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  276 LRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLS  355 (498)
T ss_pred             ceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehcc
Confidence            99999999999999999999999999999999999877778899999999999999999999999999999999999988


Q ss_pred             CcCccc-----Ccccc-----------ccCCCCCEEEccCCcccc---ccCcccc---------CCCCCCE-EEccCCcC
Q 003296          325 NSLSGS-----IPSFL-----------SNLTNLVNLNLRQNNLNG---SIPNSIT---------NMRSLIE-LQLGGNQL  375 (833)
Q Consensus       325 N~l~~~-----~~~~~-----------~~l~~L~~L~L~~N~l~~---~~p~~~~---------~l~~L~~-L~L~~N~l  375 (833)
                      |.+.--     +-+++           ..-..++.+.++++.+..   ..|+..+         .++-+.+ ...|++.+
T Consensus       356 Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~l  435 (498)
T KOG4237|consen  356 NPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLL  435 (498)
T ss_pred             CcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccch
Confidence            876410     00000           111245566666655432   1222221         1112222 22333333


Q ss_pred             CccCCCCcccccceeeccccccccchhhhhccCCCCCEEecccCcCccccchhccCCCCCCeeeCcCC
Q 003296          376 SGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNN  443 (833)
Q Consensus       376 ~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N  443 (833)
                      . .+|.-.+.-...+++.+|.++. +|..  .+.+| .+|+++|+++...-..|.+++.|.+|-+|+|
T Consensus       436 k-~lp~~iP~d~telyl~gn~~~~-vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  436 K-LLPRGIPVDVTELYLDGNAITS-VPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             h-hcCCCCCchhHHHhcccchhcc-cCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            2 3333333333568889999884 4544  55677 8999999998777778888999988888876

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.95  E-value=2.6e-27  Score=241.71  Aligned_cols=200  Identities=26%  Similarity=0.291  Sum_probs=171.0

Q ss_pred             cCCccccccCcccEEEEEEcCC-CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVMPS-GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      |+..+.||+|++|.||+|...+ ++.+|+|.+......   ...+.+.+|++.+++++|+|++++++++...+..++|+|
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e   77 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTE---KQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVME   77 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccch---HHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEe
Confidence            4556789999999999999864 899999999532211   135789999999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      |+++++|.+++..... .+++.....++.+++.++.|+|   ..+++|+|++|+||+++.++.++++|||.+........
T Consensus        78 ~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~  153 (225)
T smart00221       78 YCEGGDLFDYLRKKGG-KLSEEEARFYLRQILEALEYLH---SLGIVHRDLKPENILLGMDGLVKLADFGLARFIHRDLA  153 (225)
T ss_pred             ccCCCCHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeeCceeeEecCccc
Confidence            9999999999986322 1899999999999999999999   77999999999999999999999999999987754321


Q ss_pred             CCccccccccccccccccc-cCCcccccCcchhhHHHHHHHHhCCCcccC
Q 003296          716 TGSLSTVAGSVGYIPPEYA-YTMRVTMAGNVYSFGVILLELLTGKTAVNQ  764 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~  764 (833)
                       .......++..|++||.. ....++.++||||||++++||++|+.||..
T Consensus       154 -~~~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      154 -ALLKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             -ccccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence             112345788899999998 666788899999999999999999999965

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.95  E-value=5.5e-28  Score=231.55  Aligned_cols=251  Identities=18%  Similarity=0.230  Sum_probs=188.5

Q ss_pred             HHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEE-EecCC
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAY-VLASD  628 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~-~~~~~  628 (833)
                      ...+.|++.+.+|+|.||.+-.|.++ +.+.+|+|.+...     ....++|.+|...--.+ .|.|||.-|+. |+..+
T Consensus        21 ~l~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p-----~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d   95 (378)
T KOG1345|consen   21 DLEDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRP-----QTTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSD   95 (378)
T ss_pred             chhhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcc-----hhhHHHHHHHhccceeeccchhhhHHHHHHhhcCc
Confidence            34567888899999999999999974 7889999998422     22467899999876566 48999998755 67778


Q ss_pred             ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC--CCCCceecccee
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK--SLKEPQIGDIEL  706 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~--~~~~~ki~dfgl  706 (833)
                      .++.++||+|.|||.+-+..   ..+.+...+.++.|+++|+.|+|   +..+||||||.+|||+-  +...+|++|||.
T Consensus        96 ~YvF~qE~aP~gdL~snv~~---~GigE~~~K~v~~ql~SAi~fMH---sknlVHRdlK~eNiLif~~df~rvKlcDFG~  169 (378)
T KOG1345|consen   96 AYVFVQEFAPRGDLRSNVEA---AGIGEANTKKVFAQLLSAIEFMH---SKNLVHRDLKAENILIFDADFYRVKLCDFGL  169 (378)
T ss_pred             eEEEeeccCccchhhhhcCc---ccccHHHHHHHHHHHHHHHHHhh---ccchhhcccccceEEEecCCccEEEeeeccc
Confidence            89999999999999988764   45888889999999999999999   88999999999999993  345899999998


Q ss_pred             eeeeCCCCCCCccccccccccccccccccC---Cc--ccccCcchhhHHHHHHHHhCCCcccCC----ccHHHHHHHhhc
Q 003296          707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAYT---MR--VTMAGNVYSFGVILLELLTGKTAVNQG----NELAKWVLRNSA  777 (833)
Q Consensus       707 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~--~~~~~Dv~S~Gvvl~elltg~~p~~~~----~~~~~~~~~~~~  777 (833)
                      .+..+..-     ...--+..|-|||....   ++  ..+.+|||.||+++|.++||+.||...    .....|......
T Consensus       170 t~k~g~tV-----~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d~~Y~~~~~w~~r  244 (378)
T KOG1345|consen  170 TRKVGTTV-----KYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIMDKPYWEWEQWLKR  244 (378)
T ss_pred             ccccCcee-----hhhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhhhccCchHHHHHHHhcc
Confidence            87543211     12234567899997642   33  468899999999999999999999732    233344333222


Q ss_pred             ccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Q 003296          778 QQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML  829 (833)
Q Consensus       778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L  829 (833)
                      ...           ..+..+......++++..+-+.++|++|-...++.++-
T Consensus       245 k~~-----------~~P~~F~~fs~~a~r~Fkk~lt~~~~drcki~~~kk~r  285 (378)
T KOG1345|consen  245 KNP-----------ALPKKFNPFSEKALRLFKKSLTPRFKDRCKIWTAKKMR  285 (378)
T ss_pred             cCc-----------cCchhhcccCHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence            211           11112233455677888899999999997766666543

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.95  E-value=6.6e-28  Score=246.35  Aligned_cols=263  Identities=22%  Similarity=0.273  Sum_probs=194.6

Q ss_pred             HHHHhcCCccccccCcccEEEEEEcC----CCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEec
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVMP----SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLA  626 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~  626 (833)
                      ...+.|...+.||+|.|++||+|.+.    ....||+|.+...      ........|++.|..+. |.||+++.+++..
T Consensus        33 ~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~t------s~p~ri~~El~~L~~~gG~~ni~~~~~~~rn  106 (418)
T KOG1167|consen   33 FISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRT------SSPSRILNELEMLYRLGGSDNIIKLNGCFRN  106 (418)
T ss_pred             hhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccc------cCchHHHHHHHHHHHhccchhhhcchhhhcc
Confidence            55677889999999999999999963    4688999999422      23467899999999996 8999999999999


Q ss_pred             CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC-CCCceeccce
Q 003296          627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS-LKEPQIGDIE  705 (833)
Q Consensus       627 ~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~-~~~~ki~dfg  705 (833)
                      ++..++|+||++.-+..++..+     ++...+..++..+..||+|+|   ..+||||||||+|+|.+. .+.-.+.|||
T Consensus       107 nd~v~ivlp~~~H~~f~~l~~~-----l~~~~i~~Yl~~ll~Al~~~h---~~GIvHRDiKpsNFL~n~~t~rg~LvDFg  178 (418)
T KOG1167|consen  107 NDQVAIVLPYFEHDRFRDLYRS-----LSLAEIRWYLRNLLKALAHLH---KNGIVHRDIKPSNFLYNRRTQRGVLVDFG  178 (418)
T ss_pred             CCeeEEEecccCccCHHHHHhc-----CCHHHHHHHHHHHHHHhhhhh---ccCccccCCCccccccccccCCceEEech
Confidence            9999999999999888888764     778888999999999999999   899999999999999984 4567899999


Q ss_pred             eeeeeC-----------------C-CC-------------CC-----------CccccccccccccccccccC-Cccccc
Q 003296          706 LCKVID-----------------P-SK-------------ST-----------GSLSTVAGSVGYIPPEYAYT-MRVTMA  742 (833)
Q Consensus       706 l~~~~~-----------------~-~~-------------~~-----------~~~~~~~gt~~y~aPE~~~~-~~~~~~  742 (833)
                      +|...+                 + ..             ..           ..-...+||+||.|||++.. ..-+++
T Consensus       179 LA~~~d~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~Qtta  258 (418)
T KOG1167|consen  179 LAQRYDGYQQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTA  258 (418)
T ss_pred             hHHHHHhhhhhhhhhhhhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCCc
Confidence            986211                 0 00             00           00012479999999999864 457899


Q ss_pred             CcchhhHHHHHHHHhCCCcccCCc----cHHHHHH--------Hhhccccc--ccc------c---------cc-ccccC
Q 003296          743 GNVYSFGVILLELLTGKTAVNQGN----ELAKWVL--------RNSAQQDK--LDH------I---------LD-FNVSR  792 (833)
Q Consensus       743 ~Dv~S~Gvvl~elltg~~p~~~~~----~~~~~~~--------~~~~~~~~--~~~------~---------~~-~~~~~  792 (833)
                      +||||.|||++-+++++.||....    .+.+.+.        ......+.  +.+      +         ++ ..+..
T Consensus       259 iDiws~GVI~Lslls~~~PFf~a~dd~~al~ei~tifG~~~mrk~A~l~g~~~l~~ksn~~~~~e~~~~f~s~~~~~~~~  338 (418)
T KOG1167|consen  259 IDIWSAGVILLSLLSRRYPFFKAKDDADALAEIATIFGSAEMRKCAALPGRILLWQKSNIPTIPELRVNFETLHIESIYK  338 (418)
T ss_pred             cceeeccceeehhhccccccccCccccchHHHHHHHhChHHHHHHhhcCCceeeeccccccccHHHHhchhccChhhccc
Confidence            999999999999999999986221    1111111        11111111  000      0         00 00000


Q ss_pred             ------CchhHH-HHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          793 ------TSLAVR-SQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       793 ------~~~~~~-~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                            ...... ..+..+.+++.+|++.||.+|.|++|.++|
T Consensus       339 ~~q~n~~~~~~~d~~~~~~~dlLdk~le~np~kRitAEeALkH  381 (418)
T KOG1167|consen  339 SRQPNTEREIGSDVFPALLLDLLDKCLELNPQKRITAEDALKH  381 (418)
T ss_pred             ccccceeeccccccccHHHHHHHHHHccCChhhcccHHHHhcC
Confidence                  000011 123368899999999999999999999876

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=2.8e-28  Score=293.35  Aligned_cols=197  Identities=17%  Similarity=0.165  Sum_probs=144.6

Q ss_pred             cCCC-CCcccceEEE-------ecCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCee
Q 003296          611 KLSN-SNVMTPLAYV-------LASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPIL  682 (833)
Q Consensus       611 ~l~H-~niv~~~~~~-------~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~ii  682 (833)
                      .++| +||++++++|       ...+.++.++||+ +++|+++++.. ...+++.+++.++.||++||+|||   +.+||
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH---~~gIv  102 (793)
T PLN00181         28 SLSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDNP-DRSVDAFECFHVFRQIVEIVNAAH---SQGIV  102 (793)
T ss_pred             hhhHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhcc-cccccHHHHHHHHHHHHHHHHHHH---hCCee
Confidence            4456 6888999988       3335678889988 55999999753 346999999999999999999999   78999


Q ss_pred             ecCCCccceeeCC-------------------CCCceeccceeeeeeCCCCC--------------CCcccccccccccc
Q 003296          683 LLDLSTRNIFLKS-------------------LKEPQIGDIELCKVIDPSKS--------------TGSLSTVAGSVGYI  729 (833)
Q Consensus       683 Hrdlk~~Nill~~-------------------~~~~ki~dfgl~~~~~~~~~--------------~~~~~~~~gt~~y~  729 (833)
                      ||||||+|||++.                   ++.+|++|||+++.......              .......+||+.||
T Consensus       103 HrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  182 (793)
T PLN00181        103 VHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYT  182 (793)
T ss_pred             eccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcceE
Confidence            9999999999953                   45677888888764321000              00012246899999


Q ss_pred             ccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHH
Q 003296          730 PPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAV  809 (833)
Q Consensus       730 aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  809 (833)
                      |||++.+..|+.++|||||||++|||++|.+|+...........    .     ....+.       ......+..+++.
T Consensus       183 APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~~~~~~~~----~-----~~~~~~-------~~~~~~~~~~~~~  246 (793)
T PLN00181        183 SPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKSRTMSSLR----H-----RVLPPQ-------ILLNWPKEASFCL  246 (793)
T ss_pred             ChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHHHHHHHHH----H-----hhcChh-------hhhcCHHHHHHHH
Confidence            99999999999999999999999999999988753221111000    0     001100       0112234567888


Q ss_pred             hccCCCCCCCCCHHHHHHH
Q 003296          810 ACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       810 ~cl~~dP~~Rps~~evl~~  828 (833)
                      +||++||.+||+|.||+++
T Consensus       247 ~~L~~~P~~Rps~~eil~h  265 (793)
T PLN00181        247 WLLHPEPSCRPSMSELLQS  265 (793)
T ss_pred             HhCCCChhhCcChHHHhhc
Confidence            9999999999999999875

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=4.3e-27  Score=242.92  Aligned_cols=132  Identities=19%  Similarity=0.156  Sum_probs=112.0

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-----C---CCcccceEEEe
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-----N---SNVMTPLAYVL  625 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-----H---~niv~~~~~~~  625 (833)
                      ..|...+.+|-|.|++||.|++ ...+.||+|+.+ ...    ...+....||++|++++     |   ..||+++++|.
T Consensus        78 gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvK-SAq----hYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~Fk  152 (590)
T KOG1290|consen   78 GRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVK-SAQ----HYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFK  152 (590)
T ss_pred             ceEEEEEeccccccceeEEEeeccCCeEEEEEEEe-hhh----HHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccce
Confidence            5567789999999999999997 467889999994 221    23466788999999984     3   36999999998


Q ss_pred             cC----CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC
Q 003296          626 AS----DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK  694 (833)
Q Consensus       626 ~~----~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~  694 (833)
                      ..    .++|+|+||+ |-+|..++.....+.++....++|+.||+.||.|||..|  +|||-||||+|||+.
T Consensus       153 hsGpNG~HVCMVfEvL-GdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ec--gIIHTDlKPENvLl~  222 (590)
T KOG1290|consen  153 HSGPNGQHVCMVFEVL-GDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHREC--GIIHTDLKPENVLLC  222 (590)
T ss_pred             ecCCCCcEEEEEehhh-hhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhc--CccccCCCcceeeee
Confidence            53    5799999999 669999998876778999999999999999999999854  899999999999984

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.94  E-value=1.4e-26  Score=226.72  Aligned_cols=166  Identities=18%  Similarity=0.149  Sum_probs=127.0

Q ss_pred             CChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCcc
Q 003296          640 GTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL  719 (833)
Q Consensus       640 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~  719 (833)
                      |+|.++++.. +..++|.++..|+.|+++||+|||   +.+      ||+||+++.++.+|+  ||+++.....      
T Consensus         1 GsL~~~l~~~-~~~l~~~~~~~i~~qi~~~L~~lH---~~~------kp~Nil~~~~~~~~~--fG~~~~~~~~------   62 (176)
T smart00750        1 VSLADILEVR-GRPLNEEEIWAVCLQCLRALRELH---RQA------KSGNILLTWDGLLKL--DGSVAFKTPE------   62 (176)
T ss_pred             CcHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHH---hcC------CcccEeEcCccceee--ccceEeeccc------
Confidence            7999999853 346999999999999999999999   433      999999999999999  9999876432      


Q ss_pred             ccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHH
Q 003296          720 STVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRS  799 (833)
Q Consensus       720 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  799 (833)
                       ...||+.|||||++.+..|+.++|||||||++|||+||+.||....................    ++...   .....
T Consensus        63 -~~~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~  134 (176)
T smart00750       63 -QSRVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERELSAILEILLNGMPAD----DPRDR---SNLES  134 (176)
T ss_pred             -cCCCcccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchhcHHHHHHHHHhccC----Ccccc---ccHHH
Confidence             12689999999999999999999999999999999999999975444333222211110000    00000   01112


Q ss_pred             HH--HHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          800 QM--LTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       800 ~~--~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                      ..  .++.+++.+||+.||++||++.|+++++..
T Consensus       135 ~~~~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~  168 (176)
T smart00750      135 VSAARSFADFMRVCASRLPQRREAANHYLAHCRA  168 (176)
T ss_pred             HHhhhhHHHHHHHHHhcccccccCHHHHHHHHHH
Confidence            22  268899999999999999999999999764

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.93  E-value=4.8e-28  Score=243.76  Aligned_cols=397  Identities=25%  Similarity=0.277  Sum_probs=256.2

Q ss_pred             CCCEEECCCCCCCCcc--cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcC-CcCCCCCCcccCCCCCCCEEEc
Q 003296            9 GLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSK-NKFNGFLPINLGKTKALEELVL   85 (833)
Q Consensus         9 ~L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L   85 (833)
                      +...++|..|+|+.||  +|..+++|+.||||+|+|+.|.|++|.++.+|..|-+-+ |+|+.+....|++|..|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            4567999999999997  599999999999999999999999999999998887766 9999998999999999999999


Q ss_pred             cCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCC------------CCCCcccccCCccC
Q 003296           86 SGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLD------------GRLPTSLASITTLS  153 (833)
Q Consensus        86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~------------~~~p~~~~~l~~L~  153 (833)
                      .-|++.-+..+.|..+++|..|.|..|.+..+...+|..+..++.+.+..|.+-            ...|..++......
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence            999999999999999999999999999999777779999999999999999842            22334444444444


Q ss_pred             ccccccccccccCChhhhhcCCEE--ec-ccccccccCC-ccCCCCCCCCEEecccccCcccCCCCCC--cCCcEEEcCC
Q 003296          154 RFAANQNKFSGSVPGGITRFLRNL--DL-SYNKLLGVIP-IDLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGT  227 (833)
Q Consensus       154 ~l~l~~n~l~~~~p~~~~~~L~~L--~L-s~N~l~~~~~-~~~~~~~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~l~~  227 (833)
                      ...+.++++...-+..+...++.+  .+ +.+...+..| ..|..+++|+.|+|++|+++++-+.+|.  ..++.|.+..
T Consensus       228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~  307 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR  307 (498)
T ss_pred             hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence            444444444433333332222222  11 1222223333 3367788888888888888765555553  4556666666


Q ss_pred             ccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChh-hhCCCCCCcEEEccCCcCCCc
Q 003296          228 NLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPI-QLGSLGILQVMNLQLNKLSGE  306 (833)
Q Consensus       228 n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~  306 (833)
                      |++. .+....|.++..|+.|+|.+|+|+...|.+|..+.+|.+|+|-.|.+.-.-.. +++.       .|..+.-.|.
T Consensus       308 N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~-------Wlr~~~~~~~  379 (498)
T KOG4237|consen  308 NKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE-------WLRKKSVVGN  379 (498)
T ss_pred             chHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH-------HHhhCCCCCC
Confidence            6543 35555666666666666666666666666666666666666666655311000 0000       0111111111


Q ss_pred             CchhhcCCCcCceeeccCCcCcc---cCcccc---------ccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCc
Q 003296          307 IPSQFSQLKLLSTMNISWNSLSG---SIPSFL---------SNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQ  374 (833)
Q Consensus       307 ~p~~~~~l~~L~~L~Ls~N~l~~---~~~~~~---------~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~  374 (833)
                      .|  ...-..++.+.++++.+..   ..|+..         ..++-+.+..=-.|+....+|..+  ...-.+|++.+|.
T Consensus       380 ~~--Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i--P~d~telyl~gn~  455 (498)
T KOG4237|consen  380 PR--CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI--PVDVTELYLDGNA  455 (498)
T ss_pred             CC--CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCC--CchhHHHhcccch
Confidence            11  1122234455555544321   111111         112223322222222222444322  1234578888888


Q ss_pred             CCccCCCCcccccceeeccccccccchhhhhccCCCCCEEecccC
Q 003296          375 LSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNN  419 (833)
Q Consensus       375 l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  419 (833)
                      ++ .+|....... .+|+|+|.++..--.+|.+++.|.+|-+|+|
T Consensus       456 ~~-~vp~~~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  456 IT-SVPDELLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hc-ccCHHHHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            86 3444322222 6888999988777788999999999999886

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.92  E-value=7.9e-26  Score=216.49  Aligned_cols=247  Identities=19%  Similarity=0.283  Sum_probs=186.8

Q ss_pred             cccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCCCC
Q 003296          561 NVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKG  640 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~g  640 (833)
                      ..+.+...|..|+|++. |..+++|+++...  ......++|..|.-.|+-+.||||..++|.|..+....++..|||-|
T Consensus       196 tkl~e~hsgelwrgrwq-gndivakil~vr~--~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~g  272 (448)
T KOG0195|consen  196 TKLAESHSGELWRGRWQ-GNDIVAKILNVRE--VTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFG  272 (448)
T ss_pred             hhhccCCCccccccccc-Ccchhhhhhhhhh--cchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccch
Confidence            35667788999999984 4556667774221  12223468999999999999999999999999999999999999999


Q ss_pred             ChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceec--cceeeeeeCCCCCCCc
Q 003296          641 TLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIG--DIELCKVIDPSKSTGS  718 (833)
Q Consensus       641 ~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~--dfgl~~~~~~~~~~~~  718 (833)
                      +|+.+||+.....++..++.++|.++|+|++|||+.. +-|.---+.+..|++|++.++||+  |-.++-    .+    
T Consensus       273 slynvlhe~t~vvvd~sqav~faldiargmaflhsle-p~ipr~~lns~hvmidedltarismad~kfsf----qe----  343 (448)
T KOG0195|consen  273 SLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSLE-PMIPRFYLNSKHVMIDEDLTARISMADTKFSF----QE----  343 (448)
T ss_pred             HHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhcc-hhhhhhhcccceEEecchhhhheecccceeee----ec----
Confidence            9999999877777899999999999999999999752 224444788999999999999875  322211    11    


Q ss_pred             cccccccccccccccccCCccc---ccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCch
Q 003296          719 LSTVAGSVGYIPPEYAYTMRVT---MAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSL  795 (833)
Q Consensus       719 ~~~~~gt~~y~aPE~~~~~~~~---~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  795 (833)
                       .+..-.|.||+||.+...+-+   .++|+|||.|++||+.|...||.+-..+..=.....   +.++.-+.+       
T Consensus       344 -~gr~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfadlspmecgmkial---eglrv~ipp-------  412 (448)
T KOG0195|consen  344 -VGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSPMECGMKIAL---EGLRVHIPP-------  412 (448)
T ss_pred             -cccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCchhhhhhhhh---ccccccCCC-------
Confidence             123447899999998765533   689999999999999999999986544332111111   111111111       


Q ss_pred             hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296          796 AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR  833 (833)
Q Consensus       796 ~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r  833 (833)
                         ..+..+.+++.-|...||.+||.+..|+-.|+.++
T Consensus       413 ---gis~hm~klm~icmnedpgkrpkfdmivpilekm~  447 (448)
T KOG0195|consen  413 ---GISRHMNKLMNICMNEDPGKRPKFDMIVPILEKMI  447 (448)
T ss_pred             ---CccHHHHHHHHHHhcCCCCcCCCcceehhhHHHhc
Confidence               23456778889999999999999999999998764

>PLN03210 Resistant to P

Probab=99.92  E-value=1.8e-23  Score=259.29  Aligned_cols=353  Identities=21%  Similarity=0.281  Sum_probs=263.1

Q ss_pred             CCCEEECCCCCCCCc----ccccCCCCCCEEECCCCC------CCCcccccccCCC-CCCEEeCcCCcCCCCCCcccCCC
Q 003296            9 GLKLLNFSKNELVSL----PTFNGFAGLEVLDFSSNN------LNGNINLQFDELV-SLKSLNLSKNKFNGFLPINLGKT   77 (833)
Q Consensus         9 ~L~~L~ls~N~l~~i----~~f~~l~~L~~L~Ls~N~------l~~~~~~~f~~l~-~L~~L~Ls~N~l~~~~p~~~~~l   77 (833)
                      ..+-+.+.-..+..+    .+|.++.+|+.|.+..+.      +....|..|..++ +|+.|++.+|.++. +|..| ..
T Consensus       533 ~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-lP~~f-~~  610 (1153)
T PLN03210        533 KVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC-MPSNF-RP  610 (1153)
T ss_pred             eeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC-CCCcC-Cc
Confidence            344444444444443    258899999999997664      3334566777775 69999999999874 56667 46


Q ss_pred             CCCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCcccc
Q 003296           78 KALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAA  157 (833)
Q Consensus        78 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l  157 (833)
                      .+|++|+|++|++. .++..+..+++|+.|+|++|.....+| .++.+++|++|+|++|.....+|.++..+++|+.|++
T Consensus       611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L  688 (1153)
T PLN03210        611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM  688 (1153)
T ss_pred             cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence            88999999999988 567888899999999999876544566 4888999999999998777788999999999999999


Q ss_pred             ccccccccCChhh-hhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCC-cCCcEEEcCCcccc----
Q 003296          158 NQNKFSGSVPGGI-TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS-PNLVRLRLGTNLLI----  231 (833)
Q Consensus       158 ~~n~l~~~~p~~~-~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~-~~L~~L~l~~n~l~----  231 (833)
                      ++|.....+|..+ .+.|+.|+|++|.....+|..   ..+|+.|+|++|.+. .+|..+. ++|..|.+..+...    
T Consensus       689 ~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~  764 (1153)
T PLN03210        689 SRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWE  764 (1153)
T ss_pred             CCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccc
Confidence            9876666777654 567899999988766555532   467889999999886 4555443 67777777653211    


Q ss_pred             --CCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCch
Q 003296          232 --GEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPS  309 (833)
Q Consensus       232 --~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  309 (833)
                        ..+++..+...++|+.|+|++|...+.+|..++++++|+.|+|++|...+.+|..+ .+++|+.|++++|.....+|.
T Consensus       765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~  843 (1153)
T PLN03210        765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD  843 (1153)
T ss_pred             cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc
Confidence              11122223345688889999888777888888889999999998876555677655 678888899888765555554


Q ss_pred             hhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCc
Q 003296          310 QFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQ  374 (833)
Q Consensus       310 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~  374 (833)
                      .   ..+|+.|+|++|.++ .+|..+..+++|+.|+|++|+--..+|..+..+++|+.+++++|.
T Consensus       844 ~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        844 I---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             c---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            3   357888889888887 577788888889999988844334567777888888888888885

syringae 6; Provisional

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.92  E-value=7.8e-25  Score=233.21  Aligned_cols=170  Identities=16%  Similarity=0.093  Sum_probs=130.0

Q ss_pred             HHHHhcCCccccccCcccEEEEEEcC--CCceEEEEEccccchh-hhccChhHHHHHHHHHhcCCCCCcccceEEEecCC
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVMP--SGMSYFIKKLNWSDKI-FQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD  628 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~~--~~~~vavK~~~~~~~~-~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~  628 (833)
                      .....|...+.||+|+||+||+|...  +|+.||||++...... ......+.|.+|+++|++++|+|||+.+..   .+
T Consensus        15 ~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~---~~   91 (365)
T PRK09188         15 ALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLA---TG   91 (365)
T ss_pred             cccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEE---cC
Confidence            45567888999999999999999864  6788899987311000 011234679999999999999999963322   24


Q ss_pred             ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCC-CccceeeCCCCCceeccceee
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL-STRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdl-k~~Nill~~~~~~ki~dfgl~  707 (833)
                      ..|+|||||++++|... ..  ..      ...++.|+++||+|||   +.+|+|||| ||+|||++.++.+||+|||+|
T Consensus        92 ~~~LVmE~~~G~~L~~~-~~--~~------~~~~~~~i~~aL~~lH---~~gIiHrDL~KP~NILv~~~~~ikLiDFGlA  159 (365)
T PRK09188         92 KDGLVRGWTEGVPLHLA-RP--HG------DPAWFRSAHRALRDLH---RAGITHNDLAKPQNWLMGPDGEAAVIDFQLA  159 (365)
T ss_pred             CcEEEEEccCCCCHHHh-Cc--cc------hHHHHHHHHHHHHHHH---HCCCeeCCCCCcceEEEcCCCCEEEEECccc
Confidence            68999999999999732 11  11      1457889999999999   789999999 999999999999999999999


Q ss_pred             eeeCCCCCCC------ccccccccccccccccccC
Q 003296          708 KVIDPSKSTG------SLSTVAGSVGYIPPEYAYT  736 (833)
Q Consensus       708 ~~~~~~~~~~------~~~~~~gt~~y~aPE~~~~  736 (833)
                      +.........      ..+...|++.|+|||++..
T Consensus       160 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~pe~~~~  194 (365)
T PRK09188        160 SVFRRRGALYRIAAYEDLRHLLKHKRTYAPDALTP  194 (365)
T ss_pred             eecccCcchhhhhhhhhhhhhhccCccCCcccCCh
Confidence            9775432111      1245778999999998753

>PLN03210 Resistant to P

Probab=99.91  E-value=8.3e-23  Score=253.30  Aligned_cols=347  Identities=21%  Similarity=0.262  Sum_probs=201.3

Q ss_pred             cccccccCCCCCCEEeCcCCcC------CCCCCcccCCCC-CCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCcc
Q 003296           45 NINLQFDELVSLKSLNLSKNKF------NGFLPINLGKTK-ALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGS  117 (833)
Q Consensus        45 ~~~~~f~~l~~L~~L~Ls~N~l------~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  117 (833)
                      +.+.+|.++.+|+.|.+.++.+      ...+|..|..++ +|+.|++.+|.++ .+|..| ...+|+.|+|++|++. .
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~  625 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-K  625 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-c
Confidence            4566788999999999876643      334566666654 5888999888887 567666 4688889999988887 4


Q ss_pred             CCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCccCCCCCC
Q 003296          118 VPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPN  197 (833)
Q Consensus       118 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~  197 (833)
                      ++..+..+++|+.|+|++|...+.+|. +..+++|                      +.|+|++|.....+|..+..+++
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~L----------------------e~L~L~~c~~L~~lp~si~~L~~  682 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNL----------------------ETLKLSDCSSLVELPSSIQYLNK  682 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcCcCCc-cccCCcc----------------------cEEEecCCCCccccchhhhccCC
Confidence            667778888899999888764445553 4455554                      44455444444445555555556


Q ss_pred             CCEEecccccCcccCCCCCC-cCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccC
Q 003296          198 LQTIDLSVNMLEGSLPQNMS-PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQ  276 (833)
Q Consensus       198 L~~L~Ls~N~l~~~~p~~~~-~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  276 (833)
                      |+.|++++|..-..+|..+. ++|+.|++++|...+.+|.    ..++|+.|+|++|.+.. +|..+ .+++|+.|++.+
T Consensus       683 L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~  756 (1153)
T PLN03210        683 LEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCE  756 (1153)
T ss_pred             CCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcccc-ccccc-cccccccccccc
Confidence            66666655432222332211 2333333333322221211    12344444454444432 22222 234444444433


Q ss_pred             CccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccC
Q 003296          277 NELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIP  356 (833)
Q Consensus       277 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p  356 (833)
                      +.... ++                +.+....+..+...++|+.|+|++|...+.+|..++++++|+.|+|++|...+.+|
T Consensus       757 ~~~~~-l~----------------~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP  819 (1153)
T PLN03210        757 MKSEK-LW----------------ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP  819 (1153)
T ss_pred             cchhh-cc----------------ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence            22110 00                01111112222334566677777766666666667777777777777665444555


Q ss_pred             ccccCCCCCCEEEccCCcCCccCCCCcccccceeeccccccccchhhhhccCCCCCEEecccC-cCccccchhccCCCCC
Q 003296          357 NSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNN-RFSGEIPQLLAQMPTL  435 (833)
Q Consensus       357 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L  435 (833)
                      ..+ ++++|+.|++++|.....+|..+.. ...|+|++|.++ .+|.++..+++|+.|++++| ++. .+|..+..+++|
T Consensus       820 ~~~-~L~sL~~L~Ls~c~~L~~~p~~~~n-L~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L  895 (1153)
T PLN03210        820 TGI-NLESLESLDLSGCSRLRTFPDISTN-ISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHL  895 (1153)
T ss_pred             CCC-CccccCEEECCCCCccccccccccc-cCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCC
Confidence            554 5667777777776554445543322 245677777776 46777888888888888874 444 466667778888


Q ss_pred             CeeeCcCCc
Q 003296          436 TQLLLTNNQ  444 (833)
Q Consensus       436 ~~L~ls~N~  444 (833)
                      +.++++++.
T Consensus       896 ~~L~l~~C~  904 (1153)
T PLN03210        896 ETVDFSDCG  904 (1153)
T ss_pred             CeeecCCCc
Confidence            888887764

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.90  E-value=7.6e-23  Score=234.95  Aligned_cols=268  Identities=26%  Similarity=0.340  Sum_probs=184.0

Q ss_pred             CCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccC
Q 003296            8 DGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSG   87 (833)
Q Consensus         8 ~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~   87 (833)
                      .+-..|+|++|.|+++|. .-.++|+.|++++|+|+.+..    ..++|++|+|++|+|+.+ |..   .++|+.|+|++
T Consensus       201 ~~~~~LdLs~~~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~Ls~  271 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSL-PVL---PPGLLELSIFS  271 (788)
T ss_pred             CCCcEEEcCCCCCCcCCc-chhcCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcc-cCc---ccccceeeccC
Confidence            557789999999999985 123589999999999997543    258999999999999965 432   46899999999


Q ss_pred             CcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCC
Q 003296           88 NAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVP  167 (833)
Q Consensus        88 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p  167 (833)
                      |.|+. +|..   ..+|+.|+|++|+|+. +|.   .+++|+.|+|++|+|++. |...   ..|..|++++|++++ +|
T Consensus       272 N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~lp---~~L~~L~Ls~N~L~~-LP  338 (788)
T PRK15387        272 NPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PALP---SELCKLWAYNNQLTS-LP  338 (788)
T ss_pred             Cchhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CCCc---ccccccccccCcccc-cc
Confidence            99884 4443   3568899999999985 443   257899999999999863 3322   234445555555542 33


Q ss_pred             hhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCE
Q 003296          168 GGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTY  247 (833)
Q Consensus       168 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~  247 (833)
                      . +..                        +|+.|+|++|+|++ +|. ...+|..|++++|.+.. +|.    ...+|+.
T Consensus       339 ~-lp~------------------------~Lq~LdLS~N~Ls~-LP~-lp~~L~~L~Ls~N~L~~-LP~----l~~~L~~  386 (788)
T PRK15387        339 T-LPS------------------------GLQELSVSDNQLAS-LPT-LPSELYKLWAYNNRLTS-LPA----LPSGLKE  386 (788)
T ss_pred             c-ccc------------------------ccceEecCCCccCC-CCC-CCcccceehhhcccccc-Ccc----cccccce
Confidence            1 222                        44455555555442 221 22345555555555432 332    1346888


Q ss_pred             EECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcC
Q 003296          248 LELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSL  327 (833)
Q Consensus       248 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  327 (833)
                      |+|++|+|++. |..   .++|+.|++++|++++ +|..+   ..|+.|++++|+|+ .+|..+..+++|+.|+|++|.+
T Consensus       387 LdLs~N~Lt~L-P~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        387 LIVSGNRLTSL-PVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             EEecCCcccCC-CCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCC
Confidence            88888888853 432   3578888888888874 55432   45778889999988 5788888899999999999999


Q ss_pred             cccCccccccC
Q 003296          328 SGSIPSFLSNL  338 (833)
Q Consensus       328 ~~~~~~~~~~l  338 (833)
                      ++..+..+..+
T Consensus       458 s~~~~~~L~~l  468 (788)
T PRK15387        458 SERTLQALREI  468 (788)
T ss_pred             CchHHHHHHHH
Confidence            98877766443

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.89  E-value=1.7e-22  Score=219.46  Aligned_cols=260  Identities=22%  Similarity=0.247  Sum_probs=196.7

Q ss_pred             cCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCC-CcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS-NVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~-niv~~~~~~~~~~~~~lv~e  635 (833)
                      |.....+|.|+||.||++...  ..+|+|.+..... ........|.+|+.+++++.|+ +|+++++++......++++|
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   78 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLE-SKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVME   78 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhc-cchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEe
Confidence            445678999999999999987  8899999942221 1112467899999999999988 79999999987777899999


Q ss_pred             eCCCCChhhhhhcCCC-CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC-CceeccceeeeeeCCC
Q 003296          636 YAPKGTLFDVLHGCLE-NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK-EPQIGDIELCKVIDPS  713 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~-~~ki~dfgl~~~~~~~  713 (833)
                      |+.++++.+++..... ..++......++.|++.++.|+|   ..+++|||+||+||+++... .++++|||.++.....
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H---~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~  155 (384)
T COG0515          79 YVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLH---SKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDP  155 (384)
T ss_pred             cCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeeecCCCCeEEEeccCcceecCCC
Confidence            9999999977765321 26888899999999999999999   77899999999999999888 7999999999866443


Q ss_pred             CCCC----ccccccccccccccccccC---CcccccCcchhhHHHHHHHHhCCCcccCCcc---HHHHHHHhhccccc-c
Q 003296          714 KSTG----SLSTVAGSVGYIPPEYAYT---MRVTMAGNVYSFGVILLELLTGKTAVNQGNE---LAKWVLRNSAQQDK-L  782 (833)
Q Consensus       714 ~~~~----~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~---~~~~~~~~~~~~~~-~  782 (833)
                      ....    ......||..|+|||...+   ..++...|+||+|++++++++|..||.....   .............. .
T Consensus       156 ~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  235 (384)
T COG0515         156 GSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSL  235 (384)
T ss_pred             CccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCccccHHHHHHHHHhcCCccc
Confidence            3221    2356789999999999887   5788999999999999999999999875443   11111111111100 0


Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          783 DHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .........      ......+.+++.+|+..+|..|.++.+....
T Consensus       236 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  275 (384)
T COG0515         236 ASPLSPSNP------ELISKAASDLLKKLLAKDPKNRLSSSSDLSH  275 (384)
T ss_pred             ccccCcccc------chhhHHHHHHHHHHHhcCchhcCCHHHHhhc
Confidence            000000000      1223467789999999999999999877653

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=2.5e-24  Score=244.67  Aligned_cols=258  Identities=17%  Similarity=0.158  Sum_probs=191.1

Q ss_pred             CCccccccCcccEEEEEEcC-CCceEEEEEcccc--chhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          558 NPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWS--DKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       558 ~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~--~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      ...+++|.|++|.|+.+... .....+.|....+  ...........+..|..+-.+++|||++..+..+++....+-+|
T Consensus       321 ~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~m  400 (601)
T KOG0590|consen  321 KPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQSM  400 (601)
T ss_pred             CccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchhhh
Confidence            45689999999988888753 4444555543210  11111111223667888889999999999988888877776679


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      |||++ ||+..+..  ...+...++..++.|+..|+.|+|   ..+|.|||+|++|++++..+.+||+|||.+.......
T Consensus       401 E~~~~-Dlf~~~~~--~~~~~~~e~~c~fKqL~~Gv~y~h---~~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~  474 (601)
T KOG0590|consen  401 EYCPY-DLFSLVMS--NGKLTPLEADCFFKQLLRGVKYLH---SMGLAHRDLKLENLLVTENGILKIIDFGAASVFRYPW  474 (601)
T ss_pred             hcccH-HHHHHHhc--ccccchhhhhHHHHHHHHHHHHHH---hcCceeccCccccEEEecCCceEEeecCcceeeccCc
Confidence            99999 99999986  235788888999999999999999   8899999999999999999999999999987764333


Q ss_pred             CC--CccccccccccccccccccCCccc-ccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296          715 ST--GSLSTVAGSVGYIPPEYAYTMRVT-MAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       715 ~~--~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      ..  .....++|+..|+|||++.+..|+ ...||||.||++..|++|+.||...........  ...  .... . ....
T Consensus       475 e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~~--~~~--~~~~-~-~~~~  548 (601)
T KOG0590|consen  475 EKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSFK--TNN--YSDQ-R-NIFE  548 (601)
T ss_pred             chhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccccccccccchh--hhc--cccc-c-cccc
Confidence            22  345678999999999999999998 469999999999999999999973222111000  000  0000 0 0011


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLR  827 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~  827 (833)
                      .........+.+...++.++++.||.+|.||++|++
T Consensus       549 ~~~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~  584 (601)
T KOG0590|consen  549 GPNRLLSLLPRETRIIIYRMLQLDPTKRITIEQILN  584 (601)
T ss_pred             ChHHHHHhchhhHHHHHHHHccCChhheecHHHHhh
Confidence            222234456677889999999999999999999986

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=3.5e-22  Score=229.56  Aligned_cols=268  Identities=24%  Similarity=0.311  Sum_probs=195.5

Q ss_pred             CCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEec
Q 003296           30 AGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDL  109 (833)
Q Consensus        30 ~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  109 (833)
                      .+-..|||++|+|+.+ |..+.  .+|+.|++++|+|+.+ |.   .+++|++|+|++|+|+.+ |..   .++|+.|+|
T Consensus       201 ~~~~~LdLs~~~LtsL-P~~l~--~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~L  269 (788)
T PRK15387        201 NGNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSL-PVL---PPGLLELSI  269 (788)
T ss_pred             CCCcEEEcCCCCCCcC-Ccchh--cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccCcc-cCc---ccccceeec
Confidence            3456788888888754 44443  3788888888888753 33   246778888888887743 432   356777788


Q ss_pred             cCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCC
Q 003296          110 SANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIP  189 (833)
Q Consensus       110 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~  189 (833)
                      ++|.|+. +|..   .++|+.|+|++|+|+.. |.                         ....|+.|+|++|++.++ |
T Consensus       270 s~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~L-P~-------------------------~p~~L~~LdLS~N~L~~L-p  318 (788)
T PRK15387        270 FSNPLTH-LPAL---PSGLCKLWIFGNQLTSL-PV-------------------------LPPGLQELSVSDNQLASL-P  318 (788)
T ss_pred             cCCchhh-hhhc---hhhcCEEECcCCccccc-cc-------------------------cccccceeECCCCccccC-C
Confidence            8877764 3332   24577777777777632 22                         123477888888888764 3


Q ss_pred             ccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCC
Q 003296          190 IDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSL  269 (833)
Q Consensus       190 ~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  269 (833)
                      ..   ..+|+.|++++|.+++ +|. +..+|+.|++++|++.. +|..    ..+|+.|++++|+|++ +|..   ..+|
T Consensus       319 ~l---p~~L~~L~Ls~N~L~~-LP~-lp~~Lq~LdLS~N~Ls~-LP~l----p~~L~~L~Ls~N~L~~-LP~l---~~~L  384 (788)
T PRK15387        319 AL---PSELCKLWAYNNQLTS-LPT-LPSGLQELSVSDNQLAS-LPTL----PSELYKLWAYNNRLTS-LPAL---PSGL  384 (788)
T ss_pred             CC---cccccccccccCcccc-ccc-cccccceEecCCCccCC-CCCC----Ccccceehhhcccccc-Cccc---cccc
Confidence            22   2468889999999975 553 44689999999999875 5542    3678999999999996 4543   3579


Q ss_pred             cEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCC
Q 003296          270 TLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQN  349 (833)
Q Consensus       270 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  349 (833)
                      +.|+|++|+|++ +|..   .++|+.|++++|++++ +|..+   .+|+.|++++|+|+ .+|..+..+++|+.|+|++|
T Consensus       385 ~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N  455 (788)
T PRK15387        385 KELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN  455 (788)
T ss_pred             ceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCC
Confidence            999999999985 5543   3579999999999996 56533   46788999999998 68999999999999999999


Q ss_pred             ccccccCccccCC
Q 003296          350 NLNGSIPNSITNM  362 (833)
Q Consensus       350 ~l~~~~p~~~~~l  362 (833)
                      +|++..+..+..+
T Consensus       456 ~Ls~~~~~~L~~l  468 (788)
T PRK15387        456 PLSERTLQALREI  468 (788)
T ss_pred             CCCchHHHHHHHH
Confidence            9999888777544

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.86  E-value=4.3e-21  Score=206.05  Aligned_cols=258  Identities=16%  Similarity=0.089  Sum_probs=187.2

Q ss_pred             hcCCccccccCcccEEEEEEcCCC--ceEEEEEccccchhhhccChhHHHHHHHHHhcCCC----CCcccceEEE-ecCC
Q 003296          556 VANPLNVELKTRFSTYYKAVMPSG--MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSN----SNVMTPLAYV-LASD  628 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H----~niv~~~~~~-~~~~  628 (833)
                      .|.....||+|+||.||.|.....  ..+|+|.-.....    .....+..|+.++..+.+    +++..+++.. ..++
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~----~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~   94 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELG----SKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTED   94 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEeccc----CCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCc
Confidence            688899999999999999997543  4788887632111    111268889999999873    5888888888 4777


Q ss_pred             ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC-----CCceecc
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL-----KEPQIGD  703 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~-----~~~ki~d  703 (833)
                      ..|+||+.+ |.+|.++......+.++-.+...|+.|++.+|.++|   +.+++||||||+|+++...     ..+.+.|
T Consensus        95 ~~~iVM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH---~~G~iHRDiKp~N~~~g~~~~~~~~~~~llD  170 (322)
T KOG1164|consen   95 FNFIVMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLH---SKGFIHRDIKPENFVVGQSSRSEVRTLYLLD  170 (322)
T ss_pred             eeEEEEecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHH---hcCcccCCcCHHHeeecCCCCcccceEEEEe
Confidence            899999987 779999886554567999999999999999999999   8899999999999999854     4589999


Q ss_pred             ceeee--eeCCCC----CCCc--cccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHh
Q 003296          704 IELCK--VIDPSK----STGS--LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRN  775 (833)
Q Consensus       704 fgl~~--~~~~~~----~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~  775 (833)
                      ||+|+  ......    ....  .....||..|+++....+...+.+-|+||++-++.|+..|..||.............
T Consensus       171 fGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~~~~~~~  250 (322)
T KOG1164|consen  171 FGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTDLKSKFE  250 (322)
T ss_pred             cCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccccchHHHHH
Confidence            99998  321111    0111  134669999999999999999999999999999999999999996433221111000


Q ss_pred             hcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          776 SAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                      .   ......... ..      ...+.++.++...+-+.+..++|....+...+++
T Consensus       251 ~---~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~Pdy~~~~~~l~~  296 (322)
T KOG1164|consen  251 K---DPRKLLTDR-FG------DLKPEEFAKILEYIDSLDYEDKPDYEKLAELLKD  296 (322)
T ss_pred             H---Hhhhhcccc-cc------CCChHHHHHHHHHhhccCCcCCCCHHHHHHHHHH
Confidence            0   000000000 00      0112334445555555788999999988877654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.86  E-value=1e-21  Score=227.53  Aligned_cols=247  Identities=24%  Similarity=0.383  Sum_probs=163.6

Q ss_pred             CCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccC
Q 003296            8 DGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSG   87 (833)
Q Consensus         8 ~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~   87 (833)
                      .+.+.|+++++.++.+|.. -.++|+.|+|++|+|+.+....+   .+|++|+|++|+|+.+ |..+.  .+|+.|+|++
T Consensus       178 ~~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsL-P~~l~--~~L~~L~Ls~  250 (754)
T PRK15370        178 NNKTELRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSI-PATLP--DTIQEMELSI  250 (754)
T ss_pred             cCceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccC-Chhhh--ccccEEECcC
Confidence            5678999999999999851 24689999999999997655433   5899999999999864 55443  4799999999


Q ss_pred             CcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCC
Q 003296           88 NAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVP  167 (833)
Q Consensus        88 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p  167 (833)
                      |.+. .+|..+.  .+|+.|+|++|+|+. +|..+.  ++|+.|+|++|+|++ +|..+.  .+|+.|++++|+++. +|
T Consensus       251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP  320 (754)
T PRK15370        251 NRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LP  320 (754)
T ss_pred             CccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CC
Confidence            9998 5566654  479999999999984 566553  589999999999885 344332  345566666666653 34


Q ss_pred             hhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCE
Q 003296          168 GGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTY  247 (833)
Q Consensus       168 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~  247 (833)
                      ..+...|+.|++++|.+++ +|..+.  ++|+.|+|++|+++                       .+|. .+  .++|+.
T Consensus       321 ~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-----------------------~LP~-~l--p~~L~~  371 (754)
T PRK15370        321 ETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-----------------------VLPE-TL--PPTITT  371 (754)
T ss_pred             ccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-----------------------cCCh-hh--cCCcCE
Confidence            3344445555555555543 232221  34555555555443                       2332 12  246777


Q ss_pred             EECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChh----hhCCCCCCcEEEccCCcCC
Q 003296          248 LELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPI----QLGSLGILQVMNLQLNKLS  304 (833)
Q Consensus       248 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~  304 (833)
                      |+|++|+++.. |..+.  .+|+.|++++|++. .+|.    .+..++.+..+++.+|.+.
T Consensus       372 LdLs~N~Lt~L-P~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        372 LDVSRNALTNL-PENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             EECCCCcCCCC-CHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            77777777743 43332  35777778888776 3343    3344567788888888876

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.86  E-value=1.5e-21  Score=191.70  Aligned_cols=144  Identities=18%  Similarity=0.142  Sum_probs=109.7

Q ss_pred             ccccccCcccEEEEEEcCCCceEEEEEccccchhhhc-----cChhH-----------------HHHHHHHHhcCCCCCc
Q 003296          560 LNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQL-----GSHHK-----------------FDKELEVLGKLSNSNV  617 (833)
Q Consensus       560 ~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~-----~~~~~-----------------~~~E~~~l~~l~H~ni  617 (833)
                      ...||+|+||.||+|..++|+.||||+++........     .....                 ..+|++++.++.|+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v   81 (190)
T cd05147           2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI   81 (190)
T ss_pred             CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            3579999999999999889999999999532111000     00112                 2459999999998887


Q ss_pred             ccceEEEecCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC
Q 003296          618 MTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK  697 (833)
Q Consensus       618 v~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~  697 (833)
                      .....+..  ...++||||++++++......  ...+++.+...++.|++.+|.|+|+  ..+|+||||||+||+++ ++
T Consensus        82 ~~p~~~~~--~~~~iVmE~i~g~~l~~~~~~--~~~~~~~~~~~i~~qi~~~L~~l~H--~~giiHrDlkP~NIli~-~~  154 (190)
T cd05147          82 PCPEPILL--KSHVLVMEFIGDDGWAAPRLK--DAPLSESKARELYLQVIQIMRILYQ--DCRLVHADLSEYNLLYH-DG  154 (190)
T ss_pred             CCCcEEEe--cCCEEEEEEeCCCCCcchhhh--cCCCCHHHHHHHHHHHHHHHHHHHH--hCCcccCCCCHHHEEEE-CC
Confidence            55444332  234899999999877654322  3468899999999999999999932  67899999999999998 47


Q ss_pred             Cceeccceeeeee
Q 003296          698 EPQIGDIELCKVI  710 (833)
Q Consensus       698 ~~ki~dfgl~~~~  710 (833)
                      .++++|||+|...
T Consensus       155 ~v~LiDFG~a~~~  167 (190)
T cd05147         155 KLYIIDVSQSVEH  167 (190)
T ss_pred             cEEEEEccccccC
Confidence            8999999998754

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.85  E-value=2.6e-21  Score=209.24  Aligned_cols=213  Identities=22%  Similarity=0.363  Sum_probs=159.7

Q ss_pred             HhcCCCCCcccceEEEecCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCe-eecCCC
Q 003296          609 LGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPI-LLLDLS  687 (833)
Q Consensus       609 l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~i-iHrdlk  687 (833)
                      |+.+.|.|+.+++|.+.++...+.|.+||+.|+|.|.+... ...++|.-....+.++++||+|+|+   .+| .|+.++
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~-~~~~d~~F~~s~~rdi~~Gl~ylh~---s~i~~hg~l~   76 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNE-DIKLDYFFILSFIRDISKGLAYLHN---SPIGYHGALK   76 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhcc-ccCccHHHHHHHHHHHHHHHHHHhc---Ccceeeeeec
Confidence            46789999999999999999999999999999999999863 4579999999999999999999994   444 999999


Q ss_pred             ccceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCc-------ccccCcchhhHHHHHHHHhCCC
Q 003296          688 TRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMR-------VTMAGNVYSFGVILLELLTGKT  760 (833)
Q Consensus       688 ~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-------~~~~~Dv~S~Gvvl~elltg~~  760 (833)
                      ++|+++|..+.+|++|||+.................-..-|.|||.+....       .+.++||||||++++|+++.+.
T Consensus        77 s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~  156 (484)
T KOG1023|consen   77 SSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSG  156 (484)
T ss_pred             cccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccC
Confidence            999999999999999999987764211111111222345699999887531       4678999999999999999999


Q ss_pred             cccCCccH---HHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          761 AVNQGNEL---AKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       761 p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ||+.....   .+.+.....   .......|.+.    ...+...++..++.+||..+|++||++++|-..++.+
T Consensus       157 ~~~~~~~~~~~~eii~~~~~---~~~~~~rP~i~----~~~e~~~~l~~l~~~cw~e~P~~rPs~~~i~~~~~~~  224 (484)
T KOG1023|consen  157 PFDLRNLVEDPDEIILRVKK---GGSNPFRPSIE----LLNELPPELLLLVARCWEEIPEKRPSIEQIRSKLLTI  224 (484)
T ss_pred             ccccccccCChHHHHHHHHh---cCCCCcCcchh----hhhhcchHHHHHHHHhcccChhhCccHHHHHhhhhhh
Confidence            99843221   122222111   01111111111    1113334688999999999999999999998877654

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.85  E-value=1.6e-22  Score=217.63  Aligned_cols=227  Identities=20%  Similarity=0.197  Sum_probs=178.2

Q ss_pred             ccccCcccEEEEEEc----CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCCceEEEEee
Q 003296          562 VELKTRFSTYYKAVM----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASDSAYLFYEY  636 (833)
Q Consensus       562 ~ig~g~~g~vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~~~~lv~ey  636 (833)
                      ++|+|+||.|+.+.-    +.|..+|.|..+++.....  .......|..++..++ ||.+|++...++.+...+++++|
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~--~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~   78 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVR--DRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDF   78 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhhhhcccccccccc--cccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhh
Confidence            478999999987652    4678899999854332222  2226677889999997 99999999999999999999999


Q ss_pred             CCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCC
Q 003296          637 APKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST  716 (833)
Q Consensus       637 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~  716 (833)
                      ..+|+|...+..  ....+......+...+|-|++++|   +.+|+|||+|++||+++.+|++|+.|||+++..-..+  
T Consensus        79 ~rgg~lft~l~~--~~~f~~~~~~~~~aelaLald~lh---~l~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~--  151 (612)
T KOG0603|consen   79 LRGGDLFTRLSK--EVMFDELDVAFYLAELALALDHLH---KLGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEK--  151 (612)
T ss_pred             cccchhhhcccc--CCchHHHHHHHHHHHHHHHHhhcc---hhHHHHhcccccceeecccCccccCCchhhhHhHhhh--
Confidence            999999998876  344666677778888999999999   8899999999999999999999999999998764333  


Q ss_pred             CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchh
Q 003296          717 GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLA  796 (833)
Q Consensus       717 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  796 (833)
                          ..|||..|||||++.  ....++|+|||||+++||+||..||..  +.   .......          .    ...
T Consensus       152 ----~~cgt~eymApEI~~--gh~~a~D~ws~gvl~felltg~~pf~~--~~---~~~Il~~----------~----~~~  206 (612)
T KOG0603|consen  152 ----IACGTYEYRAPEIIN--GHLSAADWWSFGVLAFELLTGTLPFGG--DT---MKRILKA----------E----LEM  206 (612)
T ss_pred             ----hcccchhhhhhHhhh--ccCCcccchhhhhhHHHHhhCCCCCch--HH---HHHHhhh----------c----cCC
Confidence                228999999999988  467899999999999999999999975  11   1111110          0    111


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCH
Q 003296          797 VRSQMLTVLKVAVACVSVSPEARPKM  822 (833)
Q Consensus       797 ~~~~~~~~~~l~~~cl~~dP~~Rps~  822 (833)
                      +......+.+++..+...+|..|.-.
T Consensus       207 p~~l~~~a~~~~~~l~~r~p~nrLg~  232 (612)
T KOG0603|consen  207 PRELSAEARSLFRQLFKRNPENRLGA  232 (612)
T ss_pred             chhhhHHHHHHHHHHHhhCHHHHhcc
Confidence            22344556677778888888888644

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.84  E-value=2.3e-21  Score=191.54  Aligned_cols=176  Identities=11%  Similarity=0.070  Sum_probs=134.1

Q ss_pred             HHHHHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccCh------hHHHHHHHHHhcCCCCCcccceEEE
Q 003296          551 KAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSH------HKFDKELEVLGKLSNSNVMTPLAYV  624 (833)
Q Consensus       551 ~~~~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~------~~~~~E~~~l~~l~H~niv~~~~~~  624 (833)
                      +.....|...+++|.|+||.||.... ++..+|||.+..... ......      +.|.+|++.+.+++||+|..+.+++
T Consensus        27 ~~l~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~-~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~  104 (232)
T PRK10359         27 DFLSYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVK-RTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFY  104 (232)
T ss_pred             HHhhCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcC-chHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEee
Confidence            34567889999999999999999765 677899999953221 111111      2268999999999999999999986


Q ss_pred             ecC--------CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC
Q 003296          625 LAS--------DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL  696 (833)
Q Consensus       625 ~~~--------~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~  696 (833)
                      ...        +..++||||++|.+|.++..      ++.    ....+++.++..+|   ..+++|||+||+||+++.+
T Consensus       105 ~~~~~~~~~~~~~~~lvmEyi~G~tL~~~~~------~~~----~~~~~i~~~l~~lH---~~gi~H~Dikp~Nili~~~  171 (232)
T PRK10359        105 LLAERKTLRYAHTYIMLIEYIEGVELNDMPE------ISE----DVKAKIKASIESLH---QHGMVSGDPHKGNFIVSKN  171 (232)
T ss_pred             eecccccccccCCeEEEEEEECCccHHHhhh------ccH----HHHHHHHHHHHHHH---HcCCccCCCChHHEEEeCC
Confidence            643        35899999999999988732      222    24568999999999   8899999999999999988


Q ss_pred             CCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHH
Q 003296          697 KEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELL  756 (833)
Q Consensus       697 ~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ell  756 (833)
                      + ++++|||..+........              ..++....|..++|+|||||.+.-..
T Consensus       172 g-i~liDfg~~~~~~e~~a~--------------d~~vler~y~~~~di~~lg~~~~~~~  216 (232)
T PRK10359        172 G-LRIIDLSGKRCTAQRKAK--------------DRIDLERHYGIKNEIKDLGYYLLIYK  216 (232)
T ss_pred             C-EEEEECCCcccccchhhH--------------HHHHHHhHhcccccccceeEeehHHH
Confidence            8 999999987654221100              11444556778999999999876543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.83  E-value=1.2e-20  Score=218.70  Aligned_cols=278  Identities=23%  Similarity=0.387  Sum_probs=164.4

Q ss_pred             CCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecc
Q 003296           31 GLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLS  110 (833)
Q Consensus        31 ~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  110 (833)
                      +...|+++++.++.++ ..+  .++|+.|+|++|+|+.+ |..+.  ++|++|+|++|+|+. +|..+.  .+|+.|+|+
T Consensus       179 ~~~~L~L~~~~LtsLP-~~I--p~~L~~L~Ls~N~LtsL-P~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLTTIP-ACI--PEQITTLILDNNELKSL-PENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcCcCC-ccc--ccCCcEEEecCCCCCcC-Chhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECc
Confidence            3455666666655432 222  13556666666666543 32222  356666666666552 343332  245566666


Q ss_pred             CCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCc
Q 003296          111 ANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPI  190 (833)
Q Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~  190 (833)
                      +|++. .+|..+.  ++|+.|+|++|+|+. +|.                        .+...|+.|+|++|+++++ |.
T Consensus       250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~------------------------~l~~sL~~L~Ls~N~Lt~L-P~  300 (754)
T PRK15370        250 INRIT-ELPERLP--SALQSLDLFHNKISC-LPE------------------------NLPEELRYLSVYDNSIRTL-PA  300 (754)
T ss_pred             CCccC-cCChhHh--CCCCEEECcCCccCc-ccc------------------------ccCCCCcEEECCCCccccC-cc
Confidence            66655 3343332  355556665555552 333                        3333466666666666542 33


Q ss_pred             cCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCc
Q 003296          191 DLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLT  270 (833)
Q Consensus       191 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  270 (833)
                      .+.  ++|+.|++++|.++. +|..+.++|+.|++++|.+.+ +|.. +  .++|+.|+|++|+|+. +|..+  .++|+
T Consensus       301 ~lp--~sL~~L~Ls~N~Lt~-LP~~l~~sL~~L~Ls~N~Lt~-LP~~-l--~~sL~~L~Ls~N~L~~-LP~~l--p~~L~  370 (754)
T PRK15370        301 HLP--SGITHLNVQSNSLTA-LPETLPPGLKTLEAGENALTS-LPAS-L--PPELQVLDVSKNQITV-LPETL--PPTIT  370 (754)
T ss_pred             cch--hhHHHHHhcCCcccc-CCccccccceeccccCCcccc-CChh-h--cCcccEEECCCCCCCc-CChhh--cCCcC
Confidence            222  356667777777663 454455677777777777654 4432 2  2689999999999984 56555  36899


Q ss_pred             EEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCch----hhcCCCcCceeeccCCcCcccCccccccCCCCCEEEc
Q 003296          271 LLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPS----QFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNL  346 (833)
Q Consensus       271 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  346 (833)
                      .|+|++|+++. +|..+.  ..|+.|++++|++.. +|.    .+..++.+..|++.+|.++.      ..+.+|+.| +
T Consensus       371 ~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~L-l  439 (754)
T PRK15370        371 TLDVSRNALTN-LPENLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQRL-M  439 (754)
T ss_pred             EEECCCCcCCC-CCHhHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHHh-h
Confidence            99999999984 555554  368999999999984 444    34456888999999999873      334455555 4


Q ss_pred             cCCccccc-cCccccCCCCCCE
Q 003296          347 RQNNLNGS-IPNSITNMRSLIE  367 (833)
Q Consensus       347 ~~N~l~~~-~p~~~~~l~~L~~  367 (833)
                      +.+.+.|. ++...+....++.
T Consensus       440 ~s~~~~gp~i~~~~~~~~~l~~  461 (754)
T PRK15370        440 SSVGYQGPRVLFAMGDFSIVRV  461 (754)
T ss_pred             hcccccCCcccccccccccccc
Confidence            45555443 3333344444443

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.83  E-value=1.8e-20  Score=184.96  Aligned_cols=143  Identities=20%  Similarity=0.152  Sum_probs=112.1

Q ss_pred             ccccccCcccEEEEEEcCCCceEEEEEccccchhhhc-----------------c-----ChhHHHHHHHHHhcCCCCCc
Q 003296          560 LNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQL-----------------G-----SHHKFDKELEVLGKLSNSNV  617 (833)
Q Consensus       560 ~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~-----------------~-----~~~~~~~E~~~l~~l~H~ni  617 (833)
                      ...||+|+||.||+|...+|+.||||+++........                 .     ....+.+|.+.+.+++|++|
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4579999999999999889999999998533110000                 0     01234689999999999998


Q ss_pred             ccceEEEecCCceEEEEeeCCCCChhhh-hhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCC-CCeeecCCCccceeeCC
Q 003296          618 MTPLAYVLASDSAYLFYEYAPKGTLFDV-LHGCLENALDWASRYSIAVGVAQGLAFLHGFTS-NPILLLDLSTRNIFLKS  695 (833)
Q Consensus       618 v~~~~~~~~~~~~~lv~ey~~~g~L~~~-l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~-~~iiHrdlk~~Nill~~  695 (833)
                      .....+...  ..++||||++++++... +.   ...++..+...++.|++.++.|+|   . .+|+||||||+||+++ 
T Consensus        82 ~~p~~~~~~--~~~lVmE~~~g~~~~~~~l~---~~~~~~~~~~~i~~~l~~~l~~lH---~~~givHrDlkP~NIll~-  152 (190)
T cd05145          82 PVPEPILLK--KNVLVMEFIGDDGSPAPRLK---DVPLEEEEAEELYEQVVEQMRRLY---QEAGLVHGDLSEYNILYH-  152 (190)
T ss_pred             CCceEEEec--CCEEEEEEecCCCchhhhhh---hccCCHHHHHHHHHHHHHHHHHHH---HhCCEecCCCChhhEEEE-
Confidence            665555443  24899999998865443 43   235778888999999999999999   6 7999999999999998 


Q ss_pred             CCCceeccceeeeeeC
Q 003296          696 LKEPQIGDIELCKVID  711 (833)
Q Consensus       696 ~~~~ki~dfgl~~~~~  711 (833)
                      ++.++++|||+++...
T Consensus       153 ~~~~~liDFG~a~~~~  168 (190)
T cd05145         153 DGKPYIIDVSQAVELD  168 (190)
T ss_pred             CCCEEEEEcccceecC
Confidence            7899999999998764

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.83  E-value=2e-20  Score=180.39  Aligned_cols=190  Identities=12%  Similarity=0.058  Sum_probs=139.5

Q ss_pred             CCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCCceEEEEee
Q 003296          558 NPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASDSAYLFYEY  636 (833)
Q Consensus       558 ~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~~~~lv~ey  636 (833)
                      .....+++|+||+||.+.. .+..++.+.+.....-........|.+|+++|++++ |++|++++++    +..+++|||
T Consensus         5 ~~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvmey   79 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDRSY   79 (218)
T ss_pred             ccceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEee
Confidence            3457899999999997766 788888887742211111111236899999999995 5889999886    457999999


Q ss_pred             CCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCC-CccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          637 APKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL-STRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       637 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdl-k~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      ++|++|.+.+..         ....++.|+++++.|+|   ..+|+|||| ||+|||++.++.++|+|||+|........
T Consensus        80 I~G~~L~~~~~~---------~~~~~~~qi~~~L~~lH---~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~~~  147 (218)
T PRK12274         80 LAGAAMYQRPPR---------GDLAYFRAARRLLQQLH---RCGVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRAR  147 (218)
T ss_pred             ecCccHHhhhhh---------hhHHHHHHHHHHHHHHH---HCcCccCCCCCcceEEEcCCCCEEEEECCCceecCCcch
Confidence            999999765421         11346789999999999   889999999 79999999999999999999986543221


Q ss_pred             C----C--c-----cccccccccccccccccCC-ccc-ccCcchhhHHHHHHHHhCCCcccC
Q 003296          716 T----G--S-----LSTVAGSVGYIPPEYAYTM-RVT-MAGNVYSFGVILLELLTGKTAVNQ  764 (833)
Q Consensus       716 ~----~--~-----~~~~~gt~~y~aPE~~~~~-~~~-~~~Dv~S~Gvvl~elltg~~p~~~  764 (833)
                      .    .  .     ..-...++.|++|+...-. ..+ ...++++-|.-+|.++||+.++.+
T Consensus       148 ~~r~L~~rDl~~llk~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~~  209 (218)
T PRK12274        148 WMRLLAREDLRHLLKHKRMYCPAALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHWE  209 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCccc
Confidence            0    0  0     0012367888888754321 223 567888999999999999998753

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.83  E-value=9e-22  Score=221.53  Aligned_cols=250  Identities=20%  Similarity=0.271  Sum_probs=178.8

Q ss_pred             hcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHH--HhcCCCCCcccceEEEecCCceEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEV--LGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~--l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      .+...+.+|.+.|=+|.||+++.|. |+||++-+++..   -..+.|.++++-  ..-.+|||.+++..+-..+...|||
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~---~sL~~~~qrL~~ik~~l~~~pn~lPfqk~~~t~kAAylv   99 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPT---ISLRPFKQRLEEIKFALMKAPNCLPFQKVLVTDKAAYLV   99 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCce-EEEEEEeccCCC---CCchHHHHHHHHHHHHhhcCCcccchHHHHHhhHHHHHH
Confidence            4566789999999999999998888 899998543322   233445443333  5556899999998888888889999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC-C
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID-P  712 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~-~  712 (833)
                      =+|..+ +|+|.+..  ..-+...+.+-||.|+..|+.-+|   ..+|+|+|||.+|||++.-.-+-++||.--|... +
T Consensus       100 Rqyvkh-nLyDRlST--RPFL~~iEKkWiaFQLL~al~qcH---~~gVcHGDIKsENILiTSWNW~~LtDFAsFKPtYLP  173 (1431)
T KOG1240|consen  100 RQYVKH-NLYDRLST--RPFLVLIEKKWIAFQLLKALSQCH---KLGVCHGDIKSENILITSWNWLYLTDFASFKPTYLP  173 (1431)
T ss_pred             HHHHhh-hhhhhhcc--chHHHHHHHHHHHHHHHHHHHHHH---HcCccccccccceEEEeeechhhhhcccccCCccCC
Confidence            999976 99999975  334777888889999999999999   8899999999999999998889999997655432 1


Q ss_pred             CCCCCccc----cccccccccccccccCC----------c-ccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhh
Q 003296          713 SKSTGSLS----TVAGSVGYIPPEYAYTM----------R-VTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNS  776 (833)
Q Consensus       713 ~~~~~~~~----~~~gt~~y~aPE~~~~~----------~-~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~  776 (833)
                      .+.....+    +...-.+|.|||.+...          . .+++.||||.|||+.|+++ |++||.    +.+...-..
T Consensus       174 eDNPadf~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~----LSQL~aYr~  249 (1431)
T KOG1240|consen  174 EDNPADFTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFT----LSQLLAYRS  249 (1431)
T ss_pred             CCCcccceEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCccc----HHHHHhHhc
Confidence            11111111    11223479999987531          1 5788999999999999977 688885    222211111


Q ss_pred             cccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Q 003296          777 AQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML  829 (833)
Q Consensus       777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L  829 (833)
                      ......+..+. .         -+...+++++..|++.||++|.++++.++.-
T Consensus       250 ~~~~~~e~~Le-~---------Ied~~~Rnlil~Mi~rdPs~RlSAedyL~~y  292 (1431)
T KOG1240|consen  250 GNADDPEQLLE-K---------IEDVSLRNLILSMIQRDPSKRLSAEDYLQKY  292 (1431)
T ss_pred             cCccCHHHHHH-h---------CcCccHHHHHHHHHccCchhccCHHHHHHhh
Confidence            10011111100 0         0112467899999999999999999998863

>PRK10345 hypothetical protein; Provisional

Probab=99.79  E-value=3.3e-19  Score=176.34  Aligned_cols=136  Identities=18%  Similarity=0.172  Sum_probs=105.2

Q ss_pred             CCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-----CCCCcccceEEEecCC---c
Q 003296          558 NPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-----SNSNVMTPLAYVLASD---S  629 (833)
Q Consensus       558 ~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-----~H~niv~~~~~~~~~~---~  629 (833)
                      +....||+|+||.||.  .+.....+||++....    ....+.+.+|+++++++     +||||++++|++.++.   .
T Consensus         5 ~~~~~LG~G~~~~Vy~--hp~~~~k~IKv~~~~~----~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~   78 (210)
T PRK10345          5 SEQSPLGTGRHRKCYA--HPEDAQRCIKIVYHRG----DGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGY   78 (210)
T ss_pred             CCcceecCCCceEEEE--CCCCcCeEEEEEeccc----cchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeE
Confidence            4567899999999996  5433334799884221    22356799999999999     6799999999999863   4


Q ss_pred             -eEEEEee--CCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHH-HhhhcCCCCCeeecCCCccceeeCC----CCCcee
Q 003296          630 -AYLFYEY--APKGTLFDVLHGCLENALDWASRYSIAVGVAQGL-AFLHGFTSNPILLLDLSTRNIFLKS----LKEPQI  701 (833)
Q Consensus       630 -~~lv~ey--~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l-~ylH~~~~~~iiHrdlk~~Nill~~----~~~~ki  701 (833)
                       +.+|+||  +++|+|.+++.+.   .+++.  ..++.+++.++ +|||   +.+||||||||+|||++.    +..++|
T Consensus        79 v~~~I~e~~G~~~~tL~~~l~~~---~~~e~--~~~~~~~L~~l~~yLh---~~~IvhrDlKp~NILl~~~~~~~~~~~L  150 (210)
T PRK10345         79 VYDVIADFDGKPSITLTEFAEQC---RYEED--VAQLRQLLKKLKRYLL---DNRIVTMELKPQNILCQRISESEVIPVV  150 (210)
T ss_pred             EEEEEecCCCCcchhHHHHHHcc---cccHh--HHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEeccCCCCCcEEE
Confidence             3479999  6689999999752   35555  35678888888 9999   889999999999999974    347999


Q ss_pred             ccceee
Q 003296          702 GDIELC  707 (833)
Q Consensus       702 ~dfgl~  707 (833)
                      +||+-+
T Consensus       151 iDg~G~  156 (210)
T PRK10345        151 CDNIGE  156 (210)
T ss_pred             EECCCC
Confidence            995433

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.79  E-value=3.5e-19  Score=181.51  Aligned_cols=232  Identities=19%  Similarity=0.240  Sum_probs=149.4

Q ss_pred             CccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCC----------CCcccceEEEec-
Q 003296          559 PLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSN----------SNVMTPLAYVLA-  626 (833)
Q Consensus       559 ~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H----------~niv~~~~~~~~-  626 (833)
                      ..+.||.|+++.||.+++. +|+.+|||+..... .......+++.+|.-....+.+          -.++..++...- 
T Consensus        16 ~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~-~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~i~   94 (288)
T PF14531_consen   16 RGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPA-DASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLRIP   94 (288)
T ss_dssp             EEEEEEEETTEEEEEEEETTTTEEEEEEEEEESS-TTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEEET
T ss_pred             EccccccCCceEEEEEEEccCCceEEEEEEeccc-ccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEEEc
Confidence            4578999999999999984 79999999985333 2333456778888766655433          122222332221 


Q ss_pred             --------CC--------ceEEEEeeCCCCChhhhhhc---CCC--CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecC
Q 003296          627 --------SD--------SAYLFYEYAPKGTLFDVLHG---CLE--NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLD  685 (833)
Q Consensus       627 --------~~--------~~~lv~ey~~~g~L~~~l~~---~~~--~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrd  685 (833)
                              ..        ..+++|+-+ .+||.+++..   ...  ..+....++.+..|+++.+++||   ..++||+|
T Consensus        95 ~~~~~~~~~~~~~~~~v~n~~~l~P~~-~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh---~~GlVHgd  170 (288)
T PF14531_consen   95 GKPPFFERGPGQSIYWVLNRFLLMPRA-QGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLH---SYGLVHGD  170 (288)
T ss_dssp             TS-SEEEECETTEEEEEESEEEEEE---SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH---HTTEEEST
T ss_pred             CCCcceecCCCCccceeehhhhccchh-hhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHh---hcceEecc
Confidence                    11        236778877 4599887642   111  23456667888899999999999   78899999


Q ss_pred             CCccceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccC--------CcccccCcchhhHHHHHHHHh
Q 003296          686 LSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT--------MRVTMAGNVYSFGVILLELLT  757 (833)
Q Consensus       686 lk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~~Dv~S~Gvvl~ellt  757 (833)
                      |||+|++++.+|.+.++||+-........     .....+..|.|||....        -.++.+.|.|++|+++|.|.+
T Consensus       171 i~~~nfll~~~G~v~Lg~F~~~~r~g~~~-----~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC  245 (288)
T PF14531_consen  171 IKPENFLLDQDGGVFLGDFSSLVRAGTRY-----RCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWC  245 (288)
T ss_dssp             -SGGGEEE-TTS-EEE--GGGEEETTEEE-----EGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHH
T ss_pred             cceeeEEEcCCCCEEEcChHHHeecCcee-----eccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHH
Confidence            99999999999999999998776543211     11344578999997643        257899999999999999999


Q ss_pred             CCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCC
Q 003296          758 GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEAR  819 (833)
Q Consensus       758 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~R  819 (833)
                      |+.||+......            ..   +..+.. +.   +.+..+.+++..+|+.+|.+|
T Consensus       246 ~~lPf~~~~~~~------------~~---~~~f~~-C~---~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  246 GRLPFGLSSPEA------------DP---EWDFSR-CR---DMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             SS-STCCCGGGS------------TS---GGGGTT-SS------HHHHHHHHHHT-SSGGGS
T ss_pred             ccCCCCCCCccc------------cc---cccchh-cC---CcCHHHHHHHHHHccCCcccC
Confidence            999997432110            00   001111 11   455678899999999999988

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.79  E-value=1.4e-19  Score=171.18  Aligned_cols=200  Identities=15%  Similarity=0.149  Sum_probs=161.4

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCC-CCcccceEEEecCCceE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSN-SNVMTPLAYVLASDSAY  631 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H-~niv~~~~~~~~~~~~~  631 (833)
                      ...|...+.||.|+||.+|.|.. .+|..||||.=..+.      .......|.++.+.++| ..|-.+..|..+...-.
T Consensus        14 ~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a------~hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynv   87 (341)
T KOG1163|consen   14 GGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKA------KHPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNV   87 (341)
T ss_pred             ccceEEEEeecCCchhheeeeeeccCCceEEEEeecccC------CCcchhHHHHHHHHhccCCCCchhhhhccccccce
Confidence            45678889999999999999994 789999999863221      23467789999999986 45666667777888899


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC---CCceeccceeee
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL---KEPQIGDIELCK  708 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~---~~~ki~dfgl~~  708 (833)
                      +|||.. |.+|.++..-+ .+.++..+.+-.|-|++.-++|+|   ..+.|||||||+|.|..-.   ..+.++|||+|+
T Consensus        88 lVMdLL-GPsLEdLfnfC-~R~ftmkTvLMLaDQml~RiEyvH---~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaK  162 (341)
T KOG1163|consen   88 LVMDLL-GPSLEDLFNFC-SRRFTMKTVLMLADQMLSRIEYVH---LRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAK  162 (341)
T ss_pred             eeeecc-CccHHHHHHHH-hhhhhHHhHHHHHHHHHHHHHHHH---hhccccccCCccceeeccccccceEEEEeccchh
Confidence            999988 88999988754 345888899999999999999999   7889999999999998643   456799999998


Q ss_pred             eeCCCCCCC-----ccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccC
Q 003296          709 VIDPSKSTG-----SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQ  764 (833)
Q Consensus       709 ~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~  764 (833)
                      ...+.....     ......||..|.+--...+..-+.+-|+=|+|-++...--|..||.+
T Consensus       163 ky~d~~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQg  223 (341)
T KOG1163|consen  163 KYRDIRTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQG  223 (341)
T ss_pred             hhccccccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccc
Confidence            775432211     11346799999887766666677889999999999999999999975

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.75  E-value=5e-19  Score=187.28  Aligned_cols=176  Identities=23%  Similarity=0.282  Sum_probs=132.2

Q ss_pred             ceEEEEeeCCCCChhhhhhcC-CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          629 SAYLFYEYAPKGTLFDVLHGC-LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~-~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                      ..|+.|++|...+|.+|+.+. .....+|...+.++.|++.|+.|      .+.+|||+||.||....+..+||+|||+.
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y------k~~ihrdlkp~nif~~~d~q~kIgDFgl~  403 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY------KGLIHRDLKPSNIFFSDDDQLKIGDFGLV  403 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh------ccchhhhccccccccccchhhhhhhhhhe
Confidence            578999999999999999743 34468899999999999999999      46899999999999999999999999998


Q ss_pred             eeeCCCC----CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccc
Q 003296          708 KVIDPSK----STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKL  782 (833)
Q Consensus       708 ~~~~~~~----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~  782 (833)
                      .......    .....+.-+||..||+||.+.+..|+.|+||||+|++++|+++ -..+++..              ...
T Consensus       404 ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~er~--------------~t~  469 (516)
T KOG1033|consen  404 TSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFERI--------------ATL  469 (516)
T ss_pred             eecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHHHH--------------Hhh
Confidence            7665433    1223456789999999999999999999999999999999997 34443211              011


Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 003296          783 DHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLR  827 (833)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~  827 (833)
                      ..+-|..+++.  .. ...++-..++.+++.+.|.+||++.++..
T Consensus       470 ~d~r~g~ip~~--~~-~d~p~e~~ll~~lls~~p~~RP~~~~~~~  511 (516)
T KOG1033|consen  470 TDIRDGIIPPE--FL-QDYPEEYTLLQQLLSPSPEERPSAIEVAL  511 (516)
T ss_pred             hhhhcCCCChH--Hh-hcCcHHHHHHHHhcCCCcccCchHHHHhh
Confidence            11111112111  11 11223347888999999999996665543

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.74  E-value=6.5e-18  Score=167.39  Aligned_cols=198  Identities=12%  Similarity=0.131  Sum_probs=161.6

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCCceEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~~~~lv  633 (833)
                      .|...+.||+|+||..+.|+. -+++.||||.=..+.      ...+..-|.+..+.+. .+.|-..|-+..+.-+-.||
T Consensus        29 hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS------~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLV  102 (449)
T KOG1165|consen   29 HYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKS------EAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILV  102 (449)
T ss_pred             cceeccccccCcceeeecccccccCceEEEEeccccC------CcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhh
Confidence            577889999999999999984 689999999763222      2234566777666664 58888887777777778899


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC-----Cceeccceeee
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK-----EPQIGDIELCK  708 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~-----~~ki~dfgl~~  708 (833)
                      +|.+ |.||+|+..-+ ++.++..+..-||.|++.-++|+|   ....|.|||||+|.||..-+     .+.+.|||+|+
T Consensus       103 idLL-GPSLEDLFD~C-gR~FSvKTV~miA~Qmi~rie~vH---~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK  177 (449)
T KOG1165|consen  103 IDLL-GPSLEDLFDLC-GRRFSVKTVAMIAKQMITRIEYVH---EKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAK  177 (449)
T ss_pred             hhhh-CcCHHHHHHHh-cCcccHHhHHHHHHHHHHHHHHHH---hcceeecccCccceeecCCCCCCCceEEEEeccchh
Confidence            9988 78999988765 456899999999999999999999   78899999999999997443     46899999999


Q ss_pred             eeCCCCCCC-----ccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccC
Q 003296          709 VIDPSKSTG-----SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQ  764 (833)
Q Consensus       709 ~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~  764 (833)
                      ...+.....     ......||.+||+--...+..-+.+-|.=|+|-|++..+-|..||.+
T Consensus       178 ~YrDp~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQG  238 (449)
T KOG1165|consen  178 EYRDPKTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQG  238 (449)
T ss_pred             hhcCccccccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCcccc
Confidence            875443221     11346799999999888888889999999999999999999999974

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.74  E-value=6.5e-19  Score=198.89  Aligned_cols=211  Identities=18%  Similarity=0.195  Sum_probs=148.1

Q ss_pred             HHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      ....+|+..+.|-.|+||.||...++ +.+.+|+ +++++..         +.|-  ++.....|.+|            
T Consensus        80 p~e~df~~IklisngAygavylvrh~~trqrfa~-kiNkq~l---------ilRn--ilt~a~npfvv------------  135 (1205)
T KOG0606|consen   80 PSESDFNTIKLISNGAYGAVYLVRHKETRQRFAM-KINKQNL---------ILRN--ILTFAGNPFVV------------  135 (1205)
T ss_pred             CCccccceeEeeccCCCCceeeeeccccccchhh-cccccch---------hhhc--cccccCCccee------------
Confidence            34567888999999999999999875 6788888 4432211         1111  44444455554            


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                               ||=.+.++..  +.++-.        .+.+++|+|   ..+|+|||+||+|.+|+.-|++|+.|||+.+..
T Consensus       136 ---------gDc~tllk~~--g~lPvd--------mvla~Eylh---~ygivhrdlkpdnllIT~mGhiKlTDfgLsk~G  193 (1205)
T KOG0606|consen  136 ---------GDCATLLKNI--GPLPVD--------MVLAVEYLH---SYGIVHRDLKPDNLLITSMGHIKLTDFGLSKKG  193 (1205)
T ss_pred             ---------chhhhhcccC--CCCcch--------hhHHhHhhc---cCCeecCCCCCCcceeeecccccccchhhhhhh
Confidence                     5666666642  233322        277899999   889999999999999999999999999998754


Q ss_pred             CCCCCC-------------CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhc
Q 003296          711 DPSKST-------------GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSA  777 (833)
Q Consensus       711 ~~~~~~-------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~  777 (833)
                      .....+             .....++||+.|.||||+....|...+|+|++|+|+||.+.|+.||.++.. .+.+.....
T Consensus       194 Lms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVilrqgygkpvdwwamGiIlyeFLVgcvpffGdtp-eelfg~vis  272 (1205)
T KOG0606|consen  194 LMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTP-EELFGQVIS  272 (1205)
T ss_pred             hhhccchhhhcchHHHHHHhhhccccCCccccChhhhhhhccCCCccHHHHHHHHHHHheeeeeccCCCH-HHHHhhhhh
Confidence            221110             112357999999999999999999999999999999999999999986532 222222222


Q ss_pred             ccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCC
Q 003296          778 QQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARP  820 (833)
Q Consensus       778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rp  820 (833)
                      +.....+           .......++.+++.+.++.+|..|-
T Consensus       273 d~i~wpE-----------~dea~p~Ea~dli~~LL~qnp~~Rl  304 (1205)
T KOG0606|consen  273 DDIEWPE-----------EDEALPPEAQDLIEQLLRQNPLCRL  304 (1205)
T ss_pred             hhccccc-----------cCcCCCHHHHHHHHHHHHhChHhhc
Confidence            1111111           0112345778999999999999994

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.74  E-value=4.4e-18  Score=172.15  Aligned_cols=197  Identities=16%  Similarity=0.202  Sum_probs=136.1

Q ss_pred             CCCCcccceEEEecC---------------------------CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHH
Q 003296          613 SNSNVMTPLAYVLAS---------------------------DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVG  665 (833)
Q Consensus       613 ~H~niv~~~~~~~~~---------------------------~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~  665 (833)
                      +|||||++.++|.+.                           ...|+||.-.+. +|.+++..   ...+...+.-+..|
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~-tLr~yl~~---~~~s~r~~~~~laQ  349 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQ-TLREYLWT---RHRSYRTGRVILAQ  349 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchh-hHHHHHhc---CCCchHHHHHHHHH
Confidence            699999999888652                           147999988766 99999975   23455556668899


Q ss_pred             HHHHHHhhhcCCCCCeeecCCCccceeeC--CCC--CceeccceeeeeeCCCCC---CC-ccccccccccccccccccCC
Q 003296          666 VAQGLAFLHGFTSNPILLLDLSTRNIFLK--SLK--EPQIGDIELCKVIDPSKS---TG-SLSTVAGSVGYIPPEYAYTM  737 (833)
Q Consensus       666 i~~~l~ylH~~~~~~iiHrdlk~~Nill~--~~~--~~ki~dfgl~~~~~~~~~---~~-~~~~~~gt~~y~aPE~~~~~  737 (833)
                      +.+|+.|||   .++|.|||+|++|||+.  +|.  ...|+|||.|-.-+...-   .. ..-...|...-||||+....
T Consensus       350 lLEav~hL~---~hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~ta~  426 (598)
T KOG4158|consen  350 LLEAVTHLH---KHGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIATAV  426 (598)
T ss_pred             HHHHHHHHH---HccchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhhhcC
Confidence            999999999   88999999999999984  444  357999998743221100   00 01124577789999987633


Q ss_pred             c-----cc-ccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhc
Q 003296          738 R-----VT-MAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVAC  811 (833)
Q Consensus       738 ~-----~~-~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c  811 (833)
                      +     .+ .|+|.|+.|.+.||+++...||....++.--... . ++..+..           -...++..+.+++...
T Consensus       427 PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~L~~r~-Y-qe~qLPa-----------lp~~vpp~~rqlV~~l  493 (598)
T KOG4158|consen  427 PGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEMLLDTRT-Y-QESQLPA-----------LPSRVPPVARQLVFDL  493 (598)
T ss_pred             CCCceeeccchhhhhhhhhhHHHHhccCCcccccchheechhh-h-hhhhCCC-----------CcccCChHHHHHHHHH
Confidence            2     22 6899999999999999999999863332110110 0 1011111           1123445677899999


Q ss_pred             cCCCCCCCCCHHHHHHHH
Q 003296          812 VSVSPEARPKMKSVLRML  829 (833)
Q Consensus       812 l~~dP~~Rps~~evl~~L  829 (833)
                      ++.||++||+..-....|
T Consensus       494 L~r~pskRvsp~iAANvl  511 (598)
T KOG4158|consen  494 LKRDPSKRVSPNIAANVL  511 (598)
T ss_pred             hcCCccccCCccHHHhHH
Confidence            999999999876554433

>smart00090 RIO RIO-like kinase

Probab=99.74  E-value=7.2e-18  Score=171.30  Aligned_cols=146  Identities=14%  Similarity=0.052  Sum_probs=109.2

Q ss_pred             cCCccccccCcccEEEEEE--cCCCceEEEEEccccchhhhc--------------------cChhHHHHHHHHHhcCCC
Q 003296          557 ANPLNVELKTRFSTYYKAV--MPSGMSYFIKKLNWSDKIFQL--------------------GSHHKFDKELEVLGKLSN  614 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~--~~~~~~vavK~~~~~~~~~~~--------------------~~~~~~~~E~~~l~~l~H  614 (833)
                      |+..+.||+|+||.||+|.  ..+|+.||||+++........                    .....+.+|++++.++.|
T Consensus        30 ~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~~  109 (237)
T smart00090       30 SAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLYE  109 (237)
T ss_pred             HHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            5677899999999999998  568999999998532110000                    011246789999999976


Q ss_pred             CCcccceEEEecCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCC-eeecCCCccceee
Q 003296          615 SNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNP-ILLLDLSTRNIFL  693 (833)
Q Consensus       615 ~niv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~-iiHrdlk~~Nill  693 (833)
                      .. +.....+.. ...++||||+++++|......  .......+...++.|++.+++|||   ..+ |+||||||+||++
T Consensus       110 ~~-i~~p~~~~~-~~~~lV~E~~~g~~L~~~~~~--~~~~~~~~~~~i~~qi~~~l~~LH---~~g~iiH~Dikp~NIli  182 (237)
T smart00090      110 AG-VPVPKPIAW-RRNVLVMEFIGGDGLPAPRLK--DVEPEEEEEFELYDDILEEMRKLY---KEGELVHGDLSEYNILV  182 (237)
T ss_pred             cC-CCCCeeeEe-cCceEEEEEecCCcccccccc--cCCcchHHHHHHHHHHHHHHHHHH---hcCCEEeCCCChhhEEE
Confidence            43 222222222 245899999999888776532  223555667789999999999999   778 9999999999999


Q ss_pred             CCCCCceeccceeeeee
Q 003296          694 KSLKEPQIGDIELCKVI  710 (833)
Q Consensus       694 ~~~~~~ki~dfgl~~~~  710 (833)
                      + ++.++++|||.+...
T Consensus       183 ~-~~~i~LiDFg~a~~~  198 (237)
T smart00090      183 H-DGKVVIIDVSQSVEL  198 (237)
T ss_pred             E-CCCEEEEEChhhhcc
Confidence            9 889999999988754

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.74  E-value=9.5e-18  Score=169.32  Aligned_cols=138  Identities=17%  Similarity=0.197  Sum_probs=115.5

Q ss_pred             cccccCcccEEEEEEcCCCceEEEEEccccch----hhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEee
Q 003296          561 NVELKTRFSTYYKAVMPSGMSYFIKKLNWSDK----IFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEY  636 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~----~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey  636 (833)
                      +.||+|++|.||+|.. .|..|+||+......    .........+.+|++++.+++|++|.....++...+..++||||
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~   80 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEY   80 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEE
Confidence            5789999999999987 778899998642211    01111235688999999999999999888888888889999999


Q ss_pred             CCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          637 APKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       637 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                      ++|++|.+++...     .+ ++..++.+++.+|.++|   ..+++|||++|+||+++ ++.++++|||.++.
T Consensus        81 ~~G~~L~~~~~~~-----~~-~~~~i~~~i~~~l~~lH---~~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879         81 IEGEPLKDLINSN-----GM-EELELSREIGRLVGKLH---SAGIIHGDLTTSNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             eCCcCHHHHHHhc-----cH-HHHHHHHHHHHHHHHHH---hCCcccCCCCcccEEEE-CCCEEEEECCcccC
Confidence            9999999998742     22 78899999999999999   78999999999999999 78899999998764

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=3e-19  Score=192.80  Aligned_cols=128  Identities=27%  Similarity=0.287  Sum_probs=63.8

Q ss_pred             EEECCCCCCCC--c-ccccCCCCCCEEECCCCCCCCc----ccccccCCCCCCEEeCcCCcCCC------CCCcccCCCC
Q 003296           12 LLNFSKNELVS--L-PTFNGFAGLEVLDFSSNNLNGN----INLQFDELVSLKSLNLSKNKFNG------FLPINLGKTK   78 (833)
Q Consensus        12 ~L~ls~N~l~~--i-~~f~~l~~L~~L~Ls~N~l~~~----~~~~f~~l~~L~~L~Ls~N~l~~------~~p~~~~~l~   78 (833)
                      .|+|+.+.++.  . ..|..+.+|+.|+++++.++..    ++..+...++|+.|++++|.+.+      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            45666666653  2 2345566677777777776432    23334455666777777666652      1122344455


Q ss_pred             CCCEEEccCCcCcccCCccccCCCC---CCEEeccCCcCCc----cCCccccCC-CCCcEEECcCCcCC
Q 003296           79 ALEELVLSGNAFHGEIPKGIADYRN---LTLIDLSANNLSG----SVPDRIGEL-SKLEVLILSANNLD  139 (833)
Q Consensus        79 ~L~~L~L~~N~l~~~~p~~~~~l~~---L~~L~Ls~N~l~~----~~~~~~~~l-~~L~~L~Ls~N~l~  139 (833)
                      +|+.|+|++|.+....+..+..+.+   |+.|++++|+++.    .+...+..+ ++|+.|+|++|.++
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  150 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE  150 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence            5555555555554433333333333   5555555555441    112223333 44555555555444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.72  E-value=1.9e-17  Score=165.44  Aligned_cols=134  Identities=21%  Similarity=0.197  Sum_probs=109.7

Q ss_pred             ccccCcccEEEEEEcCCCceEEEEEccccchh----hhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeC
Q 003296          562 VELKTRFSTYYKAVMPSGMSYFIKKLNWSDKI----FQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYA  637 (833)
Q Consensus       562 ~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~----~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~  637 (833)
                      .||+|+||.||+|.. +|..|+||+.......    .......++.+|++++++++|+++.....++...+..++||||+
T Consensus         1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~   79 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYI   79 (199)
T ss_pred             CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEE
Confidence            489999999999985 6788999986322110    01112356889999999999998877777777778889999999


Q ss_pred             CCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          638 PKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       638 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                      +|++|.+++....  .       .++.+++++|.++|   ..+++|||+||.||+++ ++.+++.|||.++.
T Consensus        80 ~g~~l~~~~~~~~--~-------~~~~~i~~~l~~lH---~~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~  138 (199)
T TIGR03724        80 EGKPLKDVIEEGN--D-------ELLREIGRLVGKLH---KAGIVHGDLTTSNIIVR-DDKLYLIDFGLGKY  138 (199)
T ss_pred             CCccHHHHHhhcH--H-------HHHHHHHHHHHHHH---HCCeecCCCCcceEEEE-CCcEEEEECCCCcC
Confidence            9999999876421  1       78999999999999   88999999999999999 78999999998865

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=4e-19  Score=191.80  Aligned_cols=106  Identities=26%  Similarity=0.282  Sum_probs=55.6

Q ss_pred             EEECCCCCCC-CcccccccCCCCCCEEeCcCCcCCCC----CCcccCCCCCCCEEEccCCcCcc------cCCccccCCC
Q 003296           34 VLDFSSNNLN-GNINLQFDELVSLKSLNLSKNKFNGF----LPINLGKTKALEELVLSGNAFHG------EIPKGIADYR  102 (833)
Q Consensus        34 ~L~Ls~N~l~-~~~~~~f~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~------~~p~~~~~l~  102 (833)
                      .|+|..+.++ .-....|..+.+|+.|+++++.++..    ++..+...++|++|++++|.+.+      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4667777776 23334456666777777777776432    23344455566666666665542      1223344445


Q ss_pred             CCCEEeccCCcCCccCCccccCCCC---CcEEECcCCcCC
Q 003296          103 NLTLIDLSANNLSGSVPDRIGELSK---LEVLILSANNLD  139 (833)
Q Consensus       103 ~L~~L~Ls~N~l~~~~~~~~~~l~~---L~~L~Ls~N~l~  139 (833)
                      +|+.|++++|.+.+..+..|..+.+   |++|++++|+++
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~  121 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG  121 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence            5555555555554333333333333   555555554443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.71  E-value=2.5e-17  Score=189.07  Aligned_cols=140  Identities=21%  Similarity=0.138  Sum_probs=112.6

Q ss_pred             hcCCccccccCcccEEEEEEcCCCceEEEEEccccc-h---hhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296          556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSD-K---IFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~-~---~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~  631 (833)
                      .|...+.||+|+||+||+|...... +++|+...+. +   .......+++.+|++++++++|++++....++..++..+
T Consensus       334 ~~~~~~~iG~G~~g~Vy~~~~~~~~-~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~  412 (535)
T PRK09605        334 RKIPDHLIGKGAEADIKKGEYLGRD-AVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEEKT  412 (535)
T ss_pred             ccCccceeccCCcEEEEEEeecCcc-ceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCCCE
Confidence            3456789999999999999875443 4444321111 1   011112357899999999999999999888888888899


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      +||||+++++|.+++.          .+..++.+++++|.|||   ..+|+|||+||+|||+ +++.++++|||+++..
T Consensus       413 lv~E~~~g~~L~~~l~----------~~~~~~~~i~~~L~~lH---~~giiHrDlkp~NILl-~~~~~~liDFGla~~~  477 (535)
T PRK09605        413 IVMEYIGGKDLKDVLE----------GNPELVRKVGEIVAKLH---KAGIVHGDLTTSNFIV-RDDRLYLIDFGLGKYS  477 (535)
T ss_pred             EEEEecCCCcHHHHHH----------HHHHHHHHHHHHHHHHH---hCCCccCCCChHHEEE-ECCcEEEEeCcccccC
Confidence            9999999999998875          35678999999999999   7899999999999999 5788999999999764

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.71  E-value=2.8e-17  Score=163.77  Aligned_cols=140  Identities=20%  Similarity=0.114  Sum_probs=108.7

Q ss_pred             cCCccccccCcccEEEEEEcCCCceEEEEEccccchhhh------------------ccChhHHHHHHHHHhcCCCCC--
Q 003296          557 ANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQ------------------LGSHHKFDKELEVLGKLSNSN--  616 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~------------------~~~~~~~~~E~~~l~~l~H~n--  616 (833)
                      |...+.||+|+||.||+|..++|+.||||++........                  ......+.+|+.++.++.|++  
T Consensus        17 ~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~   96 (198)
T cd05144          17 ESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGFP   96 (198)
T ss_pred             hhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCCC
Confidence            566789999999999999998999999998742210000                  001224778999999998874  


Q ss_pred             cccceEEEecCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC
Q 003296          617 VMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL  696 (833)
Q Consensus       617 iv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~  696 (833)
                      +.+.++    ....++||||+++++|.+....        .....++.++++++.++|   ..+|+||||||+||+++++
T Consensus        97 v~~~~~----~~~~~lv~e~~~g~~L~~~~~~--------~~~~~~~~~i~~~l~~lh---~~gi~H~Dl~p~Nill~~~  161 (198)
T cd05144          97 VPKPID----WNRHAVVMEYIDGVELYRVRVL--------EDPEEVLDEILEEIVKAY---KHGIIHGDLSEFNILVDDD  161 (198)
T ss_pred             CCceee----cCCceEEEEEeCCcchhhcccc--------ccHHHHHHHHHHHHHHHH---HCCCCcCCCCcccEEEcCC
Confidence            444433    3456999999999999775431        234568899999999999   7899999999999999999


Q ss_pred             CCceeccceeeeeeC
Q 003296          697 KEPQIGDIELCKVID  711 (833)
Q Consensus       697 ~~~ki~dfgl~~~~~  711 (833)
                      +.++++|||.+....
T Consensus       162 ~~~~liDfg~~~~~~  176 (198)
T cd05144         162 EKIYIIDWPQMVSTD  176 (198)
T ss_pred             CcEEEEECCccccCC
Confidence            999999999986554

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=2.7e-17  Score=190.37  Aligned_cols=196  Identities=16%  Similarity=0.115  Sum_probs=160.2

Q ss_pred             HHHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC---CCCcccceEEEecCCc
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS---NSNVMTPLAYVLASDS  629 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~---H~niv~~~~~~~~~~~  629 (833)
                      -...|.+...+|+|+||.||+|...+|+.||+|+=+...       .=+|.-=.+++.||+   -+-|..+..++...+.
T Consensus       696 ~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~-------~WEfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~  768 (974)
T KOG1166|consen  696 GGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPN-------PWEFYICLQVMERLKPQMLPSIMHISSAHVFQNA  768 (974)
T ss_pred             cceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCC-------ceeeeehHHHHHhhchhhhcchHHHHHHHccCCc
Confidence            345677889999999999999998889999999874221       112433445566665   2456677777778899


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC-------CCCceec
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS-------LKEPQIG  702 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~-------~~~~ki~  702 (833)
                      -++|+||.+.|+|.+++..  ...++|...+.++.|+++-+++||   ..+|||+||||+|.||..       ...++|+
T Consensus       769 S~lv~ey~~~Gtlld~~N~--~~~m~e~lv~~~~~qml~ive~lH---~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lI  843 (974)
T KOG1166|consen  769 SVLVSEYSPYGTLLDLINT--NKVMDEYLVMFFSCQMLRIVEHLH---AMGIIHGDIKPDNFLLRREICADSDSKGLYLI  843 (974)
T ss_pred             ceeeeeccccccHHHhhcc--CCCCCchhhhHHHHHHHHHHHHHH---hcceecccCCcceeEeecccCCCCcccceEEE
Confidence            9999999999999999984  567999999999999999999999   889999999999999942       2457999


Q ss_pred             cceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCC
Q 003296          703 DIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKT  760 (833)
Q Consensus       703 dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~  760 (833)
                      |||-+--+.--.........++|-++-.+|+..+..++..+|-|.+.-+++-|+.|+.
T Consensus       844 DfG~siDm~lfp~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y  901 (974)
T KOG1166|consen  844 DFGRSIDMKLFPDGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKY  901 (974)
T ss_pred             ecccceeeeEcCCCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHH
Confidence            9998865542222234467889999999999999999999999999999999999975

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=3.6e-19  Score=159.75  Aligned_cols=157  Identities=29%  Similarity=0.446  Sum_probs=85.1

Q ss_pred             ccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCC
Q 003296           24 PTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRN  103 (833)
Q Consensus        24 ~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  103 (833)
                      |.+..+++++.|.||+|+++.+. ..++.+.+|+.|++++|+|+ ..|..++.++.|+.|+++-|++. +.|..|+.++.
T Consensus        27 ~gLf~~s~ITrLtLSHNKl~~vp-pnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~  103 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNKLTVVP-PNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA  103 (264)
T ss_pred             ccccchhhhhhhhcccCceeecC-CcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence            33344455555555555555332 24555555555555555555 24555555555555555555554 55555555555


Q ss_pred             CCEEeccCCcCCc-cCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhh--hhcCCEEecc
Q 003296          104 LTLIDLSANNLSG-SVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGI--TRFLRNLDLS  180 (833)
Q Consensus       104 L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~--~~~L~~L~Ls  180 (833)
                      |+.|||++|++.. .+|+.|-.|+.|+-|+|++|.+. .+|..++.+++|+.|.+..|.+. .+|..+  +..|+.|.+.
T Consensus       104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiq  181 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQ  181 (264)
T ss_pred             hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcc
Confidence            5555555555542 44555555555555555555554 45555555555555555555554 344433  3345555666


Q ss_pred             ccccc
Q 003296          181 YNKLL  185 (833)
Q Consensus       181 ~N~l~  185 (833)
                      +|+++
T Consensus       182 gnrl~  186 (264)
T KOG0617|consen  182 GNRLT  186 (264)
T ss_pred             cceee
Confidence            66655

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=2.1e-18  Score=154.89  Aligned_cols=154  Identities=28%  Similarity=0.492  Sum_probs=97.8

Q ss_pred             CCCCCCEEECCCCCCCCc-ccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEE
Q 003296            6 GIDGLKLLNFSKNELVSL-PTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELV   84 (833)
Q Consensus         6 ~l~~L~~L~ls~N~l~~i-~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~   84 (833)
                      ++++++.|.||+|+++.+ |.+..+.+|++|++++|+|+. .|.++++++.|+.|+++-|++. +.|..|+.++.|+.||
T Consensus        31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            445556666666666665 345666666666666666653 3445666666666666666665 4566666666666666


Q ss_pred             ccCCcCcc-cCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCcccccccccc
Q 003296           85 LSGNAFHG-EIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFS  163 (833)
Q Consensus        85 L~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~  163 (833)
                      |.+|++.. .+|..|..++-|+-|+|+.|.+. ++|.+++++++|+.|.+..|.+- .+|..++.++.|+.|.+.+|+++
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence            66666643 45666666666666666666665 55666666666666666666665 45666666666666666666665

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=3.3e-17  Score=186.68  Aligned_cols=257  Identities=20%  Similarity=0.173  Sum_probs=188.0

Q ss_pred             hcCCccccccCcccEEEEEEcC--CCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCCceEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP--SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~~~~l  632 (833)
                      .|...+-||+|+|+.|-.....  ....+|+|.+....  ...........|..+-..+. |+|++++++.....+..++
T Consensus        21 ~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~--~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~~   98 (601)
T KOG0590|consen   21 QYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPP--KSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYLL   98 (601)
T ss_pred             cccccccccccccchhhhhhhcCCCcceeeccCCCCCC--CccchhhhcCccccccccccccccccccCCccCCCccccc
Confidence            3555667999999999888764  45567777774332  11122334455888777777 9999999999999999999


Q ss_pred             EEeeCCCCChhhhh-hcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC-Cceeccceeeeee
Q 003296          633 FYEYAPKGTLFDVL-HGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK-EPQIGDIELCKVI  710 (833)
Q Consensus       633 v~ey~~~g~L~~~l-~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~-~~ki~dfgl~~~~  710 (833)
                      ++||.++|++++.+ +... ...+......+..|+..|+.|+|.  ..++.|||+||+|.+++..+ ..|++|||+|...
T Consensus        99 ~~~~s~g~~~f~~i~~~~~-~~~~~~~~~~~~~ql~s~l~~~H~--~~~~~h~~ikP~n~~l~~s~~~l~~~df~~At~~  175 (601)
T KOG0590|consen   99 SLSYSDGGSLFSKISHPDS-TGTSSSSASRYLPQLNSGLSYLHP--ENGVTHRDIKPSNSLLDESGSALKIADFGLATAY  175 (601)
T ss_pred             ccCcccccccccccccCCc-cCCCCcchhhhhhhhccCccccCc--ccccccCCCCCccchhccCCCcccCCCchhhccc
Confidence            99999999999998 5421 134555666789999999999995  45799999999999999999 9999999999877


Q ss_pred             CC-CCCCCccccccc-cccccccccccCCcc-cccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc
Q 003296          711 DP-SKSTGSLSTVAG-SVGYIPPEYAYTMRV-TMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       711 ~~-~~~~~~~~~~~g-t~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (833)
                      .. ..........+| ++.|+|||...+..| ....|+||.|+++.-+++|..|+.......          ........
T Consensus       176 ~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~----------~~~~~~~~  245 (601)
T KOG0590|consen  176 RNKNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKD----------GRYSSWKS  245 (601)
T ss_pred             cccCCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCcccccccc----------ccceeecc
Confidence            65 333333455788 999999999887544 578999999999999999999987332211          01111111


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLR  827 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~  827 (833)
                      .........+........++..+++..+|..|.+.+++..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~l~k~l~~~~~~r~s~~~~~~  285 (601)
T KOG0590|consen  246 NKGRFTQLPWNSISDQAHDLLHKILKENPSNRLSIEELKL  285 (601)
T ss_pred             cccccccCccccCChhhhhcccccccCCchhccccccccc
Confidence            1101011112234456678888999999999999888643

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.64  E-value=6.3e-16  Score=147.02  Aligned_cols=135  Identities=23%  Similarity=0.139  Sum_probs=114.1

Q ss_pred             ccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCC--CCcccceEEEecCCceEEEEeeC
Q 003296          560 LNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSN--SNVMTPLAYVLASDSAYLFYEYA  637 (833)
Q Consensus       560 ~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H--~niv~~~~~~~~~~~~~lv~ey~  637 (833)
                      .+.+|+|.++.||++...+ ..++||.......      ...+.+|+.++++++|  +++.++++++..++..+++|||+
T Consensus         3 ~~~i~~g~~~~v~~~~~~~-~~~~iK~~~~~~~------~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~   75 (155)
T cd05120           3 IKLLKGGLTNRVYLLGTKD-EDYVLKINPSREK------GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWI   75 (155)
T ss_pred             ceecccccccceEEEEecC-CeEEEEecCCCCc------hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEec
Confidence            4679999999999999854 7899999842211      4579999999999987  58999999888888999999999


Q ss_pred             CCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          638 PKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       638 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      +++.+..+         ++.....++.+++++++++|.....+++|+|+||+||++++.+.+++.|||.++..
T Consensus        76 ~g~~~~~~---------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~~  139 (155)
T cd05120          76 EGETLDEV---------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGYG  139 (155)
T ss_pred             CCeecccC---------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccCC
Confidence            98877643         56677788999999999999654468999999999999999899999999988753

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.62  E-value=1.4e-15  Score=150.29  Aligned_cols=140  Identities=18%  Similarity=0.108  Sum_probs=98.8

Q ss_pred             ccccccCcccEEEEEEcCCCceEEEEEccccchhhhccC--------------------hhHHHHHHHHHhcCCCCC--c
Q 003296          560 LNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGS--------------------HHKFDKELEVLGKLSNSN--V  617 (833)
Q Consensus       560 ~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~--------------------~~~~~~E~~~l~~l~H~n--i  617 (833)
                      .+.||+|+||.||+|...+|+.||||++...........                    ......|.+.+.++++..  +
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            367999999999999988899999998843211110000                    001145677777775543  3


Q ss_pred             ccceEEEecCCceEEEEeeCCCCChhh-hhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCC-CCeeecCCCccceeeCC
Q 003296          618 MTPLAYVLASDSAYLFYEYAPKGTLFD-VLHGCLENALDWASRYSIAVGVAQGLAFLHGFTS-NPILLLDLSTRNIFLKS  695 (833)
Q Consensus       618 v~~~~~~~~~~~~~lv~ey~~~g~L~~-~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~-~~iiHrdlk~~Nill~~  695 (833)
                      .+.+++    ...++||||+++|++.. .+...   ... .+...++.+++.++.++|   . .+|+|||+||+||+++ 
T Consensus        82 ~~~~~~----~~~~lv~e~~~g~~~~~~~l~~~---~~~-~~~~~~~~~~~~~l~~lh---~~~~ivH~Dl~p~Nili~-  149 (187)
T cd05119          82 PKPIDL----NRHVLVMEFIGGDGIPAPRLKDV---RLL-EDPEELYDQILELMRKLY---REAGLVHGDLSEYNILVD-  149 (187)
T ss_pred             CceEec----CCCEEEEEEeCCCCccChhhhhh---hhc-ccHHHHHHHHHHHHHHHh---hccCcCcCCCChhhEEEE-
Confidence            333332    34699999999965432 12211   011 556788999999999999   6 8899999999999999 


Q ss_pred             CCCceeccceeeeeeC
Q 003296          696 LKEPQIGDIELCKVID  711 (833)
Q Consensus       696 ~~~~ki~dfgl~~~~~  711 (833)
                      ++.++++|||.+....
T Consensus       150 ~~~~~liDfg~a~~~~  165 (187)
T cd05119         150 DGKVYIIDVPQAVEID  165 (187)
T ss_pred             CCcEEEEECccccccc
Confidence            8999999999987553

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.58  E-value=6.5e-15  Score=150.05  Aligned_cols=140  Identities=16%  Similarity=0.159  Sum_probs=107.7

Q ss_pred             ccccc-cCcccEEEEEEcCCCceEEEEEccccch---hh------hccChhHHHHHHHHHhcCCCCCc--ccceEEEecC
Q 003296          560 LNVEL-KTRFSTYYKAVMPSGMSYFIKKLNWSDK---IF------QLGSHHKFDKELEVLGKLSNSNV--MTPLAYVLAS  627 (833)
Q Consensus       560 ~~~ig-~g~~g~vy~~~~~~~~~vavK~~~~~~~---~~------~~~~~~~~~~E~~~l~~l~H~ni--v~~~~~~~~~  627 (833)
                      ..++| .|+.|+||++... |..+|||+......   ..      .......+.+|++++.+++|++|  ++.+++...+
T Consensus        36 ~~~lg~~~g~gtv~~v~~~-~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~  114 (239)
T PRK01723         36 ARVVGSAKGRGTTWFVQTP-GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVR  114 (239)
T ss_pred             CceeecCCCCccEEEEEeC-CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeee
Confidence            46788 8999999999884 77899998843211   00      11234578999999999998885  6677775543


Q ss_pred             Cc----eEEEEeeCCC-CChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceec
Q 003296          628 DS----AYLFYEYAPK-GTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIG  702 (833)
Q Consensus       628 ~~----~~lv~ey~~~-g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~  702 (833)
                      ..    .++||||+++ ++|.+++..   ..++..    .+.+++.++.++|   ..+|+||||||+|||++.++.++++
T Consensus       115 ~~~~~~~~lV~e~l~G~~~L~~~l~~---~~l~~~----~~~~i~~~l~~lH---~~GI~HrDlkp~NILv~~~~~v~LI  184 (239)
T PRK01723        115 HGLFYRADILIERIEGARDLVALLQE---APLSEE----QWQAIGQLIARFH---DAGVYHADLNAHNILLDPDGKFWLI  184 (239)
T ss_pred             cCcceeeeEEEEecCCCCCHHHHHhc---CCCCHH----HHHHHHHHHHHHH---HCCCCCCCCCchhEEEcCCCCEEEE
Confidence            22    3599999997 699998864   234443    3578999999999   8899999999999999988899999


Q ss_pred             cceeeeee
Q 003296          703 DIELCKVI  710 (833)
Q Consensus       703 dfgl~~~~  710 (833)
                      |||.+...
T Consensus       185 Dfg~~~~~  192 (239)
T PRK01723        185 DFDRGELR  192 (239)
T ss_pred             ECCCcccC
Confidence            99988653

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.52  E-value=2.4e-15  Score=149.18  Aligned_cols=204  Identities=19%  Similarity=0.258  Sum_probs=140.8

Q ss_pred             HHHhcCCCCCcccceEEEecC-----CceEEEEeeCCCCChhhhhhcCCC--CCCCHHHHHHHHHHHHHHHHhhhcCCCC
Q 003296          607 EVLGKLSNSNVMTPLAYVLAS-----DSAYLFYEYAPKGTLFDVLHGCLE--NALDWASRYSIAVGVAQGLAFLHGFTSN  679 (833)
Q Consensus       607 ~~l~~l~H~niv~~~~~~~~~-----~~~~lv~ey~~~g~L~~~l~~~~~--~~l~~~~~~~i~~~i~~~l~ylH~~~~~  679 (833)
                      .-+-++-|.|||+++.|+.+.     .+..++.|||+.|++.++|++...  ..+....-.+|+.||..||.|||+. .+
T Consensus       119 dnllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~-~P  197 (458)
T KOG1266|consen  119 DNLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSC-DP  197 (458)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhcc-CC
Confidence            345556799999999998753     457899999999999999986433  2466666678999999999999975 78


Q ss_pred             CeeecCCCccceeeCCCCCceeccceeeeeeCCCC--CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh
Q 003296          680 PILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK--STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT  757 (833)
Q Consensus       680 ~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt  757 (833)
                      +|+|+++...-|.+..++-+|++---.........  .+.......|-++|.|||+-.....+.++|||+||...+||..
T Consensus       198 piihgnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlemai  277 (458)
T KOG1266|consen  198 PIIHGNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMAI  277 (458)
T ss_pred             ccccCCcchhheeecCCceEEecccCccccchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHHH
Confidence            99999999999999999888875321111000000  0011123457889999999887788899999999999999998


Q ss_pred             CCCccc-CCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Q 003296          758 GKTAVN-QGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML  829 (833)
Q Consensus       758 g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L  829 (833)
                      |..--. ........        ..+...+   +. ...      ..=++.+.+|++..|..||+|++.+.|.
T Consensus       278 lEiq~tnseS~~~~e--------e~ia~~i---~~-len------~lqr~~i~kcl~~eP~~rp~ar~llfHp  332 (458)
T KOG1266|consen  278 LEIQSTNSESKVEVE--------ENIANVI---IG-LEN------GLQRGSITKCLEGEPNGRPDARLLLFHP  332 (458)
T ss_pred             heeccCCCcceeehh--------hhhhhhe---ee-ccC------ccccCcCcccccCCCCCCcchhhhhcCc
Confidence            865322 11111000        0000000   00 000      0113567799999999999999988764

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.48  E-value=1.4e-13  Score=152.51  Aligned_cols=146  Identities=16%  Similarity=0.094  Sum_probs=103.9

Q ss_pred             ccccccCcccEEEEEEcCCCceEEEEEccccchhhhc------------------------------------cChhHHH
Q 003296          560 LNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQL------------------------------------GSHHKFD  603 (833)
Q Consensus       560 ~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~------------------------------------~~~~~~~  603 (833)
                      .+.+|.|++|.||+|++.+|+.||||+.+..-...-.                                    ..+-+|.
T Consensus       122 ~~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~  201 (437)
T TIGR01982       122 EKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR  201 (437)
T ss_pred             CcceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence            3679999999999999999999999998532100000                                    0011477


Q ss_pred             HHHHHHhcCC-----CCCcccceEEEecCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHH-HHHhhhcCC
Q 003296          604 KELEVLGKLS-----NSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQ-GLAFLHGFT  677 (833)
Q Consensus       604 ~E~~~l~~l~-----H~niv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~-~l~ylH~~~  677 (833)
                      +|++.+.+++     +++|.-..-|.......+|||||++|++|.++...... ..   .+..++..++. .+..+|   
T Consensus       202 ~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~-~~---~~~~ia~~~~~~~l~ql~---  274 (437)
T TIGR01982       202 REAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEA-GL---DRKALAENLARSFLNQVL---  274 (437)
T ss_pred             HHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhc-CC---CHHHHHHHHHHHHHHHHH---
Confidence            7887777763     34443333333334567999999999999987653211 12   23456666665 467788   


Q ss_pred             CCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          678 SNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       678 ~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ..+++|+|+||.||+++.++.+++.|||++..+.+
T Consensus       275 ~~g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~~  309 (437)
T TIGR01982       275 RDGFFHADLHPGNIFVLKDGKIIALDFGIVGRLSE  309 (437)
T ss_pred             hCCceeCCCCcccEEECCCCcEEEEeCCCeeECCH
Confidence            77899999999999999999999999999987753

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.39  E-value=7e-15  Score=155.87  Aligned_cols=195  Identities=30%  Similarity=0.436  Sum_probs=138.9

Q ss_pred             EEECCCCCCCCcc--cc-cCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCC
Q 003296           12 LLNFSKNELVSLP--TF-NGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGN   88 (833)
Q Consensus        12 ~L~ls~N~l~~i~--~f-~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N   88 (833)
                      .|.|++.++...|  ++ -++..-...||+.|++. ..|..+..+..|..|.|.+|.|. .+|..+.++..|.+|||+.|
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~N  131 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSN  131 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccc
Confidence            3556666666653  22 23555566777777776 34556666677777777777776 46677777777777777777


Q ss_pred             cCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCCh
Q 003296           89 AFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPG  168 (833)
Q Consensus        89 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~  168 (833)
                      +++ .+|..+..|+ |+.|-+++|+++ .+|..++.+..|..||.+.|.+. .+|..++.+.+|+.|.+..|++.. +|.
T Consensus       132 qlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~  206 (722)
T KOG0532|consen  132 QLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPE  206 (722)
T ss_pred             hhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCH
Confidence            776 5666666665 777777777776 56666777777777777777776 466677777777777777777763 444


Q ss_pred             hhh-hcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCC
Q 003296          169 GIT-RFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQN  215 (833)
Q Consensus       169 ~~~-~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~  215 (833)
                      .+. --|..||+|.|++. .+|..|..|.+|++|.|.+|.++. .|..
T Consensus       207 El~~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PPAq  252 (722)
T KOG0532|consen  207 ELCSLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PPAQ  252 (722)
T ss_pred             HHhCCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC-ChHH
Confidence            443 22889999999998 679999999999999999999983 4443

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.37  E-value=1.1e-12  Score=142.39  Aligned_cols=252  Identities=17%  Similarity=0.120  Sum_probs=180.5

Q ss_pred             HHhcCCcccccc--CcccEEEEEEc---CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecC
Q 003296          554 EAVANPLNVELK--TRFSTYYKAVM---PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLAS  627 (833)
Q Consensus       554 ~~~~~~~~~ig~--g~~g~vy~~~~---~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~  627 (833)
                      ...|....-+|.  |.+|.||++..   .++..+|+|+-+...  ........=.+|+....+++ |+|.|+.+..+.+.
T Consensus       113 ~~~~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~--s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~  190 (524)
T KOG0601|consen  113 DQRFPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPF--SPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGS  190 (524)
T ss_pred             hhhcccccccccCCCCCceeecccCCcccCCcccccccccCCC--CCccccccccchhhcccccCccccccccCcccccC
Confidence            345667788999  99999999987   378999999853211  11122233456777777775 99999999999999


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHH----HHHhhhcCCCCCeeecCCCccceeeCCC-CCceec
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQ----GLAFLHGFTSNPILLLDLSTRNIFLKSL-KEPQIG  702 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~----~l~ylH~~~~~~iiHrdlk~~Nill~~~-~~~ki~  702 (833)
                      +..++-+|+|. .+|.++.+.. ...++....+.+..+..+    |+.++|   ...++|-|+||+||.+..+ ...+.+
T Consensus       191 ~~lfiqtE~~~-~sl~~~~~~~-~~~~p~~~l~~~~~~~~~~~~~al~~~h---s~~~~~~~~kp~~i~~~~~~~s~~~~  265 (524)
T KOG0601|consen  191 GILFIQTELCG-ESLQSYCHTP-CNFLPDNLLWNSLRDWLSRDVTALSHLH---SNNIVHDDLKPANIFTTSDWTSCKLT  265 (524)
T ss_pred             Ccceeeecccc-chhHHhhhcc-cccCCchhhhhHHhhhhhcccccccccC---CCcccccccchhheecccccceeecC
Confidence            99999999995 6888888753 223566666677777777    999999   8899999999999999998 889999


Q ss_pred             cceeeeeeCCCCCCCc---cccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccc
Q 003296          703 DIELCKVIDPSKSTGS---LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQ  779 (833)
Q Consensus       703 dfgl~~~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~  779 (833)
                      |||+...+........   ....-|...|++||... ..++.+.|+||+|.+..|..++..+...+.. ..|..      
T Consensus       266 df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~-~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~-~~W~~------  337 (524)
T KOG0601|consen  266 DFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLN-GLATFASDIFSLGEVILEAILGSHLPSVGKN-SSWSQ------  337 (524)
T ss_pred             CcceeEEccCCccccceeeeecCCCCceEeChhhhc-cccchHhhhcchhhhhHhhHhhcccccCCCC-CCccc------
Confidence            9999988765432111   11125677899999765 4688999999999999999999877653311 11211      


Q ss_pred             ccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 003296          780 DKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLR  827 (833)
Q Consensus       780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~  827 (833)
                        .+....+     .+.......++...+..+++.+|..|++.+++..
T Consensus       338 --~r~~~ip-----~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~  378 (524)
T KOG0601|consen  338 --LRQGYIP-----LEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTA  378 (524)
T ss_pred             --cccccCc-----hhhhcCcchhhhhHHHHhcCcchhhhhHHHHHhc
Confidence              1111100     0111112234445788999999999999988754

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.32  E-value=4.4e-12  Score=141.85  Aligned_cols=148  Identities=12%  Similarity=0.010  Sum_probs=95.6

Q ss_pred             HHhcCCccccccCcccEEEEEEcCC-CceEEEEEccccchhh-------------------hc-----------c-----
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMPS-GMSYFIKKLNWSDKIF-------------------QL-----------G-----  597 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~~-~~~vavK~~~~~~~~~-------------------~~-----------~-----  597 (833)
                      -+.|+. +.+|+|++|.||+|++++ |+.||||++.+.-...                   ..           .     
T Consensus       119 F~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l  197 (537)
T PRK04750        119 FDDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTL  197 (537)
T ss_pred             HHhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHH
Confidence            345666 789999999999999976 9999999995321100                   00           0     


Q ss_pred             -ChhHHHHHHHHHhcCC----CCCcccceEEEec-CCceEEEEeeCCCCChhhh--hhcCCCC--CCCHHHHHHHHHHHH
Q 003296          598 -SHHKFDKELEVLGKLS----NSNVMTPLAYVLA-SDSAYLFYEYAPKGTLFDV--LHGCLEN--ALDWASRYSIAVGVA  667 (833)
Q Consensus       598 -~~~~~~~E~~~l~~l~----H~niv~~~~~~~~-~~~~~lv~ey~~~g~L~~~--l~~~~~~--~l~~~~~~~i~~~i~  667 (833)
                       .+-+|.+|++.+.+++    +.+.|.+-.+|.+ ....+|||||++|+++.++  +......  .+.......++.|+ 
T Consensus       198 ~~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qi-  276 (537)
T PRK04750        198 HDELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQV-  276 (537)
T ss_pred             HHhhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHH-
Confidence             0123555665555553    3333443333333 4567899999999999874  2221100  12222222223333 


Q ss_pred             HHHHhhhcCCCCCeeecCCCccceeeCCCC----CceeccceeeeeeCC
Q 003296          668 QGLAFLHGFTSNPILLLDLSTRNIFLKSLK----EPQIGDIELCKVIDP  712 (833)
Q Consensus       668 ~~l~ylH~~~~~~iiHrdlk~~Nill~~~~----~~ki~dfgl~~~~~~  712 (833)
                            +   ..+++|+|+||.||+++.++    .+++.|||++..++.
T Consensus       277 ------f---~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~~  316 (537)
T PRK04750        277 ------F---RDGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLNK  316 (537)
T ss_pred             ------H---hCCeeeCCCChHHeEEecCCCCCCeEEEEecceEEECCH
Confidence                  2   46899999999999999888    899999999988754

>PLN03150 hypothetical protein; Provisional

Probab=99.31  E-value=7.3e-12  Score=145.50  Aligned_cols=90  Identities=37%  Similarity=0.662  Sum_probs=43.1

Q ss_pred             CCEEEccCCccccccCccccCCCCCCEEEccCCcCCccCCCCccccc--ceeeccccccccchhhhhccCCCCCEEeccc
Q 003296          341 LVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQ--IALNLSSNLFEGPIPTTFARLNGLEVLDLSN  418 (833)
Q Consensus       341 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~--~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  418 (833)
                      ++.|+|++|.++|.+|..+..+++|+.|+|++|.+.|.+|.....+.  +.|+|++|.++|.+|..++.+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            45566666666666666666666666666665555544332111111  1222222223333344444455555555555


Q ss_pred             CcCccccchhcc
Q 003296          419 NRFSGEIPQLLA  430 (833)
Q Consensus       419 N~l~~~~p~~~~  430 (833)
                      |+++|.+|..+.
T Consensus       500 N~l~g~iP~~l~  511 (623)
T PLN03150        500 NSLSGRVPAALG  511 (623)
T ss_pred             CcccccCChHHh
Confidence            555555554443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.30  E-value=1e-12  Score=124.82  Aligned_cols=122  Identities=26%  Similarity=0.344  Sum_probs=41.6

Q ss_pred             ECCCCCCCCcccccCCCCCCEEECCCCCCCCccccccc-CCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcc
Q 003296           14 NFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFD-ELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHG   92 (833)
Q Consensus        14 ~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~   92 (833)
                      .|+.+.|..++.+.+..+++.|+|++|.|+.+..  ++ .+.+|+.||||+|.|+.+.  .+..++.|++|+|++|+|+.
T Consensus         3 ~lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~   78 (175)
T PF14580_consen    3 RLTANMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISS   78 (175)
T ss_dssp             ---------------------------------S----TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S
T ss_pred             cccccccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCc
Confidence            4567777888888888899999999999987653  44 5789999999999998653  57789999999999999985


Q ss_pred             cCCccc-cCCCCCCEEeccCCcCCccCC-ccccCCCCCcEEECcCCcCCC
Q 003296           93 EIPKGI-ADYRNLTLIDLSANNLSGSVP-DRIGELSKLEVLILSANNLDG  140 (833)
Q Consensus        93 ~~p~~~-~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~  140 (833)
                      + +..+ ..+++|+.|+|++|+|..... ..+..+++|++|+|.+|.++.
T Consensus        79 i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   79 I-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             --CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             c-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            4 3344 468999999999999975322 356778999999999998863

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.29  E-value=4e-12  Score=141.32  Aligned_cols=195  Identities=35%  Similarity=0.454  Sum_probs=103.4

Q ss_pred             EEECCCCCCC-CcccccCCCCCCEEECCCCCCCCcccccccCCC-CCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCc
Q 003296           12 LLNFSKNELV-SLPTFNGFAGLEVLDFSSNNLNGNINLQFDELV-SLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNA   89 (833)
Q Consensus        12 ~L~ls~N~l~-~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~   89 (833)
                      .++++.|.+. .+.....++.++.|++.+|+++.+.+. ...+. +|+.|++++|++.. +|..+..+++|+.|++++|+
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhcccccccccchhh-hhhhhhccccccccccCCch
Confidence            3555566552 233344445666666666666644432 23332 66666666666653 33455566666666666666


Q ss_pred             CcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccc-cCCh
Q 003296           90 FHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSG-SVPG  168 (833)
Q Consensus        90 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~-~~p~  168 (833)
                      ++ .+|...+.+++|+.|++++|+++ .+|.....+..|++|.+++|++. ..+..+.++.++..+.+..|++.. ..+.
T Consensus       175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~  251 (394)
T COG4886         175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESI  251 (394)
T ss_pred             hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchh
Confidence            65 34444445666666666666665 34444444455666666666432 344455555555555555555543 1111


Q ss_pred             hhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCC
Q 003296          169 GITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLP  213 (833)
Q Consensus       169 ~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p  213 (833)
                      .....+++|++++|+++...+  +....+++.|++++|.+...+|
T Consensus       252 ~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         252 GNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             ccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence            122335556666665554333  5555556666666655554433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.28  E-value=7.6e-12  Score=139.10  Aligned_cols=178  Identities=34%  Similarity=0.490  Sum_probs=88.2

Q ss_pred             CCCCEEEccCCcCcccCCccccCCC-CCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccc
Q 003296           78 KALEELVLSGNAFHGEIPKGIADYR-NLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFA  156 (833)
Q Consensus        78 ~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~  156 (833)
                      +.++.|++.+|.++ .+|.....+. +|+.|++++|++. .+|..++.+++|+.|++++|+++ .+|.....++.|+.|+
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence            44444444444444 2333333332 4444444444444 22233444444444444444444 2222222344444444


Q ss_pred             cccccccccCChh--hhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCC
Q 003296          157 ANQNKFSGSVPGG--ITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEI  234 (833)
Q Consensus       157 l~~n~l~~~~p~~--~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~  234 (833)
                      +++|+++ .+|..  ....|+.|++++|.+. ..+..+..+.++..+.+++|++...                       
T Consensus       193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-----------------------  247 (394)
T COG4886         193 LSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-----------------------  247 (394)
T ss_pred             ccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-----------------------
Confidence            4444444 22322  3344666777776432 2344556666777777777765421                       


Q ss_pred             CccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhh
Q 003296          235 PSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQ  286 (833)
Q Consensus       235 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~  286 (833)
                       ...+..+++++.|++++|.++....  ++.+.+|+.|++++|.+....|..
T Consensus       248 -~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         248 -PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             -cchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence             1223445556666666666664433  666666677777666666554443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.27  E-value=1.3e-12  Score=124.03  Aligned_cols=127  Identities=25%  Similarity=0.266  Sum_probs=53.6

Q ss_pred             CCCCCCCEEECCCCCCCCccccc-CCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEE
Q 003296            5 GGIDGLKLLNFSKNELVSLPTFN-GFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEEL   83 (833)
Q Consensus         5 ~~l~~L~~L~ls~N~l~~i~~f~-~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L   83 (833)
                      .+..+++.|+|++|.|+.|..++ .+.+|+.|||++|.|+.+.  .|..+++|++|+|++|+|+.+.+.....+++|++|
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             ccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            35567899999999999997776 5899999999999999765  48889999999999999997543323468999999


Q ss_pred             EccCCcCcccCC-ccccCCCCCCEEeccCCcCCccC---CccccCCCCCcEEEC
Q 003296           84 VLSGNAFHGEIP-KGIADYRNLTLIDLSANNLSGSV---PDRIGELSKLEVLIL  133 (833)
Q Consensus        84 ~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~L  133 (833)
                      +|++|+|..... ..+..+++|+.|+|.+|.++...   ...+..+|+|+.||-
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            999999986432 45778999999999999997432   124567889998864

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.27  E-value=2.5e-12  Score=139.81  Aligned_cols=249  Identities=14%  Similarity=0.066  Sum_probs=174.3

Q ss_pred             HHHhcCCccccccCcccEEEEEEc--CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCc
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVM--PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDS  629 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~--~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~  629 (833)
                      ...+|.....||.|.|+.||+...  .++..||+|.+.... ... .+...-..|+-+...+ .|.++|+.+..|..-+.
T Consensus       263 ~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l-~~~-~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~  340 (524)
T KOG0601|consen  263 KLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGL-ATF-ASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQ  340 (524)
T ss_pred             ecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccc-cch-HhhhcchhhhhHhhHhhcccccCCCCCCcccccc
Confidence            345677788999999999999874  478999999884221 111 1111223455555555 48899998888887788


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC-CCceeccceeee
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL-KEPQIGDIELCK  708 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~-~~~ki~dfgl~~  708 (833)
                      .|+=-|||+++++.....-  ...++...++++..|++.|+.++|   ++.++|+|+||+||++..+ +..+++|||.+.
T Consensus       341 ~~ip~e~~~~~s~~l~~~~--~~~~d~~~~~~~~~q~~~~l~~i~---s~~~~~~d~~psni~i~~~~~~~~~~~~~~~t  415 (524)
T KOG0601|consen  341 GYIPLEFCEGGSSSLRSVT--SQMLDEDPRLRLTAQILTALNVIH---SKLFVHLDVKPSNILISNDGFFSKLGDFGCWT  415 (524)
T ss_pred             ccCchhhhcCcchhhhhHH--HHhcCcchhhhhHHHHHhcccccc---chhhhcccccccceeeccchhhhhcccccccc
Confidence            8899999999988776522  335778888999999999999999   8899999999999999876 788999999886


Q ss_pred             eeCCCCCCCcccccccccccc--ccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc
Q 003296          709 VIDPSKSTGSLSTVAGSVGYI--PPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL  786 (833)
Q Consensus       709 ~~~~~~~~~~~~~~~gt~~y~--aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  786 (833)
                      .+....     ....++-+++  +|+......+-.++|+||||.-+.|.++|..--..+.   +|.....          
T Consensus       416 ~~~~~~-----~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~~~---~~~~i~~----------  477 (524)
T KOG0601|consen  416 RLAFSS-----GVFHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSESGV---QSLTIRS----------  477 (524)
T ss_pred             ccceec-----ccccccccccccchhhccccccccccccccccccccccccCcccCcccc---cceeeec----------
Confidence            432221     2233344455  4444456667899999999999999999875433221   1211110          


Q ss_pred             cccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          787 DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       787 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                       ......    .....++..++..+..+|+..||.+.+...+.+-
T Consensus       478 -~~~p~~----~~~~~~~q~~~kv~~~~~~~~~~l~~~l~~~~~~  517 (524)
T KOG0601|consen  478 -GDTPNL----PGLKLQLQVLLKVMINPDRKRRPSAVELSLHSEF  517 (524)
T ss_pred             -ccccCC----CchHHhhhhhhhhhcCCccccchhhhhhcccchh
Confidence             001111    1112455667778889999999999988766543

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.26  E-value=1.4e-11  Score=119.60  Aligned_cols=131  Identities=15%  Similarity=0.078  Sum_probs=95.4

Q ss_pred             cccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCCCC
Q 003296          561 NVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKG  640 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~g  640 (833)
                      +.++.|.++.||++..+ |..|++|......     .....+.+|+++++.+.+.++++-+-++ ..+..++||||++|.
T Consensus         4 ~~l~~G~~~~vy~~~~~-~~~~~lK~~~~~~-----~~~~~~~~E~~~l~~l~~~~~~P~~~~~-~~~~~~lv~e~i~G~   76 (170)
T cd05151           4 SPLKGGMTNKNYRVEVA-NKKYVVRIPGNGT-----ELLINRENEAENSKLAAEAGIGPKLYYF-DPETGVLITEFIEGS   76 (170)
T ss_pred             eecCCcccCceEEEEEC-CeEEEEEeCCCCc-----ccccCHHHHHHHHHHHHHhCCCCceEEE-eCCCCeEEEEecCCC
Confidence            46788999999999874 7889999974221     1124578999999999776665433222 334468999999998


Q ss_pred             ChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCC--CCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          641 TLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFT--SNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       641 ~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~--~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                      ++.+. .      .   ....++.+++++++.||...  ...++|+|+||.||+++ ++.+++.|||.+..
T Consensus        77 ~l~~~-~------~---~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~  136 (170)
T cd05151          77 ELLTE-D------F---SDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGM  136 (170)
T ss_pred             ccccc-c------c---cCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccC
Confidence            87643 0      0   11235678999999999532  22369999999999998 66899999998753

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.22  E-value=3.6e-12  Score=145.12  Aligned_cols=250  Identities=18%  Similarity=0.145  Sum_probs=169.0

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      ++...+-+-+|+++.++-+.- ..|...++|......+... ...+...++-.++-..+||-+|....-+......+||+
T Consensus       805 ~~~i~~p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~-~~~~s~r~~s~~~i~p~~P~v~~~~~s~~~rsP~~L~~  883 (1205)
T KOG0606|consen  805 GFEITKPSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIRT-NDYESIRSKSNILITPRSPAVVRSFPSFPCRSPLPLVG  883 (1205)
T ss_pred             cceecccccCCCCcccccCCccccccccchhhhccchhhcc-ccccccCCccCccccCCCCceecccCCCCCCCCcchhh
Confidence            344455667888998887764 3455555555532222211 12233444444444456677776665566678899999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC-
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS-  713 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~-  713 (833)
                      +|..+|+|...++...  ..+..-.......+..+++|||   ...++|||+||.|++...++..+++|||........ 
T Consensus       884 ~~~~~~~~~Skl~~~~--~~saepaRs~i~~~vqs~e~L~---s~~r~h~~~~p~~~l~~~~gh~~l~~~~t~~~vg~~~  958 (1205)
T KOG0606|consen  884 HYLNGGDLPSKLHNSG--CLSAEPARSPILERVQSLESLH---SSLRKHRDLKPDSLLIAYDGHRPLTDFGTLSKVGLIP  958 (1205)
T ss_pred             HHhccCCchhhhhcCC--CcccccccchhHHHHhhhhccc---cchhhcccccccchhhcccCCcccCcccccccccccc
Confidence            9999999999998743  3444444455666788999999   666999999999999999999999999844322100 


Q ss_pred             --------------------CC-----C---CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCC
Q 003296          714 --------------------KS-----T---GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQG  765 (833)
Q Consensus       714 --------------------~~-----~---~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~  765 (833)
                                          ..     .   ..-....||+.|.|||...+......+|+|++|++++|.++|.+||...
T Consensus       959 p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~na~ 1038 (1205)
T KOG0606|consen  959 PTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIPPFNAE 1038 (1205)
T ss_pred             CcCCcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCCCCCCCc
Confidence                                00     0   0012357999999999999999999999999999999999999999754


Q ss_pred             ccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHH
Q 003296          766 NELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMK  823 (833)
Q Consensus       766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~  823 (833)
                      ..-           ..++.+....++ ++........++.+++.+.+..+|.+|-.|.
T Consensus      1039 tpq-----------~~f~ni~~~~~~-~p~g~~~~s~~aq~~~~~ll~~~~~qr~~a~ 1084 (1205)
T KOG0606|consen 1039 TPQ-----------QIFENILNRDIP-WPEGPEEGSYEAQDLINRLLTEEPTQRLGAK 1084 (1205)
T ss_pred             chh-----------hhhhccccCCCC-CCCCccccChhhhhhhhhhhccCchhccCcc
Confidence            321           111222222221 1222234455677888889999999997665

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.21  E-value=5e-13  Score=141.99  Aligned_cols=182  Identities=27%  Similarity=0.447  Sum_probs=136.0

Q ss_pred             CCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCcee
Q 003296          241 SLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTM  320 (833)
Q Consensus       241 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  320 (833)
                      .+.--...||+.|++. .+|..+..+..|+.+.|.+|.+. .+|..+.++..|+++||+.|+++ ..|..+..|+ |+.|
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            3444566888888888 56777888888888889998887 77888888888899999999888 5566666665 7888


Q ss_pred             eccCCcCcccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCccCCCCcccccceeeccccccccc
Q 003296          321 NISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGP  400 (833)
Q Consensus       321 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~  400 (833)
                      -+++|+++ .+|..++.+..|..||.+.|.+. .+|..++++.+|+.|.+..|++....+....-....||+|.|+++ .
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis-~  225 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKIS-Y  225 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCcee-e
Confidence            88998887 67777888888888999999887 677788888888888888888874433322111255677777766 5


Q ss_pred             hhhhhccCCCCCEEecccCcCccccchhcc
Q 003296          401 IPTTFARLNGLEVLDLSNNRFSGEIPQLLA  430 (833)
Q Consensus       401 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  430 (833)
                      +|-.|..++.|++|-|.+|.+. ..|..+.
T Consensus       226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC  254 (722)
T KOG0532|consen  226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQIC  254 (722)
T ss_pred             cchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence            6677777777777777777775 3444443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.19  E-value=2.7e-12  Score=142.76  Aligned_cols=244  Identities=29%  Similarity=0.334  Sum_probs=142.4

Q ss_pred             CCCCCEEECCCCCCCCc-ccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296            7 IDGLKLLNFSKNELVSL-PTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL   85 (833)
Q Consensus         7 l~~L~~L~ls~N~l~~i-~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   85 (833)
                      +..++.+++..|.+..+ .....+.+|+.|++.+|+|..+... +..+++|++|+|++|.|+.+.+  +..++.|+.|++
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l  147 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNL  147 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheeccccccccccc--hhhccchhhhee
Confidence            45566666777777763 4466777777777777777765442 5667777777777777776543  444555777777


Q ss_pred             cCCcCcccCCccccCCCCCCEEeccCCcCCccCC-ccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccc
Q 003296           86 SGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVP-DRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSG  164 (833)
Q Consensus        86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~  164 (833)
                      ++|.|+.+  ..+..+.+|+.+++++|++..+.+ . ...+.+|+.+++++|.+...  ..+..+..+..+++..|.++.
T Consensus       148 ~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~  222 (414)
T KOG0531|consen  148 SGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISK  222 (414)
T ss_pred             ccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccccee
Confidence            77777643  345557777777777777765444 2 46677777777777776532  233334444444555566554


Q ss_pred             cCChhhhh--cCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCC
Q 003296          165 SVPGGITR--FLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSL  242 (833)
Q Consensus       165 ~~p~~~~~--~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l  242 (833)
                      ..+.....  +|+.+++++|.+... +..+..+.++..|++..|.+...-                         .+...
T Consensus       223 ~~~l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~~-------------------------~~~~~  276 (414)
T KOG0531|consen  223 LEGLNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNLE-------------------------GLERL  276 (414)
T ss_pred             ccCcccchhHHHHHHhcccCccccc-cccccccccccccchhhccccccc-------------------------ccccc
Confidence            33322222  255666666655432 133444555555666655554221                         12234


Q ss_pred             CCCCEEECCCCCCCCC---CCc-cccCCCCCcEEEccCCccCCCCh
Q 003296          243 EKLTYLELDNNSFTGM---IPQ-QLGSCRSLTLLNLAQNELNGSLP  284 (833)
Q Consensus       243 ~~L~~L~L~~N~l~~~---~~~-~~~~l~~L~~L~L~~N~l~~~~p  284 (833)
                      ..+..+.+..|.+...   ... .....++++...+..|.+....+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  277 PKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             chHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            4555555666655421   111 14556777788888887765444

>PLN03150 hypothetical protein; Provisional

Probab=99.18  E-value=3.7e-11  Score=139.66  Aligned_cols=108  Identities=32%  Similarity=0.633  Sum_probs=70.6

Q ss_pred             CCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcC
Q 003296           56 LKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSA  135 (833)
Q Consensus        56 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  135 (833)
                      ++.|+|++|.+++.+|..++.+++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|..++++++|++|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            56666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CcCCCCCCcccccC-CccCcccccccccc
Q 003296          136 NNLDGRLPTSLASI-TTLSRFAANQNKFS  163 (833)
Q Consensus       136 N~l~~~~p~~~~~l-~~L~~l~l~~n~l~  163 (833)
                      |+++|.+|..+..+ .++..+++.+|...
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccc
Confidence            66666666666543 34445555555543

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.14  E-value=3.5e-10  Score=109.81  Aligned_cols=139  Identities=14%  Similarity=0.027  Sum_probs=98.0

Q ss_pred             cccccCcccEEEEEEcCC-------CceEEEEEccccc-----hhh----h---------ccChhHHH----HHHHHHhc
Q 003296          561 NVELKTRFSTYYKAVMPS-------GMSYFIKKLNWSD-----KIF----Q---------LGSHHKFD----KELEVLGK  611 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~~-------~~~vavK~~~~~~-----~~~----~---------~~~~~~~~----~E~~~l~~  611 (833)
                      ..||.|.=+.||.|...+       +..+|||..+...     +..    +         ....+.+.    +|.+.|++
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            478999999999998653       5799999764211     000    0         01122344    89999999


Q ss_pred             CCC--CCcccceEEEecCCceEEEEeeCCCCChhh-hhhcCCCCCCCHHHHHHHHHHHHHHHHhh-hcCCCCCeeecCCC
Q 003296          612 LSN--SNVMTPLAYVLASDSAYLFYEYAPKGTLFD-VLHGCLENALDWASRYSIAVGVAQGLAFL-HGFTSNPILLLDLS  687 (833)
Q Consensus       612 l~H--~niv~~~~~~~~~~~~~lv~ey~~~g~L~~-~l~~~~~~~l~~~~~~~i~~~i~~~l~yl-H~~~~~~iiHrdlk  687 (833)
                      +..  -++-+.+++    ..-++||||+.++.+.. .+++   ..++..+...+..+++.++.++ |   ..+|||+|++
T Consensus        83 l~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~~~~~Lkd---~~~~~~~~~~i~~~i~~~l~~l~H---~~glVHGDLs  152 (197)
T cd05146          83 MQKAGIPCPEVVVL----KKHVLVMSFIGDDQVPAPKLKD---AKLNDEEMKNAYYQVLSMMKQLYK---ECNLVHADLS  152 (197)
T ss_pred             HHHcCCCCCeEEEe----cCCEEEEEEcCCCCccchhhhc---cccCHHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence            864  345555543    56789999997654422 2322   2344455667789999999999 7   7799999999


Q ss_pred             ccceeeCCCCCceeccceeeeee
Q 003296          688 TRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       688 ~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      +.||+++ ++.+.++|||.+...
T Consensus       153 ~~NIL~~-~~~v~iIDF~qav~~  174 (197)
T cd05146         153 EYNMLWH-DGKVWFIDVSQSVEP  174 (197)
T ss_pred             HHHEEEE-CCcEEEEECCCceeC
Confidence            9999996 467999999987654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.13  E-value=4.2e-12  Score=124.55  Aligned_cols=129  Identities=28%  Similarity=0.286  Sum_probs=77.7

Q ss_pred             CCCCCEEECCCCCCCCcc-cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296            7 IDGLKLLNFSKNELVSLP-TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL   85 (833)
Q Consensus         7 l~~L~~L~ls~N~l~~i~-~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   85 (833)
                      +..|+.+|||+|.|+.+. +..-.+.++.|++|+|.|..+..  +..|++|+.||||+|.++. +.++-..+.+.++|.|
T Consensus       283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKL  359 (490)
T ss_pred             HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHh-hhhhHhhhcCEeeeeh
Confidence            345666677777776663 34556667777777776665443  5556677777777776663 3444455666666777


Q ss_pred             cCCcCcccCCccccCCCCCCEEeccCCcCCccC-CccccCCCCCcEEECcCCcCCC
Q 003296           86 SGNAFHGEIPKGIADYRNLTLIDLSANNLSGSV-PDRIGELSKLEVLILSANNLDG  140 (833)
Q Consensus        86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~  140 (833)
                      ++|.|...  ..++.+-+|..||+++|+|.... -..+++|+-|++|.|.+|.+.+
T Consensus       360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            76666532  34555556666666666665321 1345666666666666666653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.13  E-value=8e-12  Score=139.02  Aligned_cols=220  Identities=25%  Similarity=0.261  Sum_probs=116.0

Q ss_pred             CCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 003296           28 GFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLI  107 (833)
Q Consensus        28 ~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  107 (833)
                      .+..++.+++..|.|.. .......+++|..|+|.+|+|..+.. .+..+++|++|+|++|.|+.+  ..+..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhh
Confidence            45566666677777664 22235566777777777777765332 255667777777777777644  234555567777


Q ss_pred             eccCCcCCccCCccccCCCCCcEEECcCCcCCCCCC-cccccCCccCccccccccccccCChhhhhcCCEEecccccccc
Q 003296          108 DLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLP-TSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLG  186 (833)
Q Consensus       108 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~  186 (833)
                      ++++|.|+.+  ..|..+++|+.+++++|.++...+ . ...+.+++.+++..|.+...........+..+++..|.++.
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~  222 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISK  222 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhccccccee
Confidence            7777777632  345556677777777777665444 2 34555555666666655433332223333334555554443


Q ss_pred             cCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCC
Q 003296          187 VIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSC  266 (833)
Q Consensus       187 ~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l  266 (833)
                      ..+.....+.+|+.+++++|.+..                       ++ ..+..+.++..|++.+|++....  .+...
T Consensus       223 ~~~l~~~~~~~L~~l~l~~n~i~~-----------------------~~-~~~~~~~~l~~l~~~~n~~~~~~--~~~~~  276 (414)
T KOG0531|consen  223 LEGLNELVMLHLRELYLSGNRISR-----------------------SP-EGLENLKNLPVLDLSSNRISNLE--GLERL  276 (414)
T ss_pred             ccCcccchhHHHHHHhcccCcccc-----------------------cc-ccccccccccccchhhccccccc--ccccc
Confidence            322111111124444444444331                       10 12334556666666666665432  23334


Q ss_pred             CCCcEEEccCCccC
Q 003296          267 RSLTLLNLAQNELN  280 (833)
Q Consensus       267 ~~L~~L~L~~N~l~  280 (833)
                      +.+..+.+..|.+.
T Consensus       277 ~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  277 PKLSELWLNDNKLA  290 (414)
T ss_pred             chHHHhccCcchhc
Confidence            44555555555543

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=99.12  E-value=4.2e-10  Score=114.42  Aligned_cols=143  Identities=20%  Similarity=0.186  Sum_probs=111.1

Q ss_pred             cccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCC--CcccceEEEecC---CceEEEEe
Q 003296          561 NVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS--NVMTPLAYVLAS---DSAYLFYE  635 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~--niv~~~~~~~~~---~~~~lv~e  635 (833)
                      +.++.|.++.||++...+|..+++|.......   ......+.+|+++++.+++.  .+.+++.++...   +..++|||
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~---~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e   80 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGAL---LPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVME   80 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCccc---CcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEE
Confidence            56889999999999987778999999842211   11345789999999999764  456677776654   36789999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCC--------------------------------------
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFT--------------------------------------  677 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~--------------------------------------  677 (833)
                      |++|+++.+.+..   ..++..++..++.+++++|++||+..                                      
T Consensus        81 ~i~G~~l~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (223)
T cd05154          81 RVDGRVLRDRLLR---PELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAM  157 (223)
T ss_pred             EeCCEecCCCCCC---CCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHHH
Confidence            9999988876542   34778888888999999999998531                                      


Q ss_pred             ---------------CCCeeecCCCccceeeCC--CCCceeccceeeee
Q 003296          678 ---------------SNPILLLDLSTRNIFLKS--LKEPQIGDIELCKV  709 (833)
Q Consensus       678 ---------------~~~iiHrdlk~~Nill~~--~~~~ki~dfgl~~~  709 (833)
                                     ...++|+|+.|.||+++.  ++.+.+.||+.+..
T Consensus       158 ~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~  206 (223)
T cd05154         158 ERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATL  206 (223)
T ss_pred             HHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEecccccc
Confidence                           245799999999999998  56678999987764

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.03  E-value=1.6e-09  Score=118.95  Aligned_cols=166  Identities=16%  Similarity=0.180  Sum_probs=122.3

Q ss_pred             cCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCCCCChhhhhhcCCCCCCC
Q 003296          576 MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALD  655 (833)
Q Consensus       576 ~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~  655 (833)
                      ..+|.+|.|...++...    .......+-++.|+.+|||||++++..++.++..|||+|-+.  -|..++++.     .
T Consensus        34 k~~~~~vsVF~~~~~~~----~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~--Pl~~~lk~l-----~  102 (690)
T KOG1243|consen   34 KADGGPVSVFVYKRSNG----EVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVR--PLETVLKEL-----G  102 (690)
T ss_pred             eccCCceEEEEEeCCCc----hhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeeccc--cHHHHHHHh-----H
Confidence            35788999988853322    223456778889999999999999999999999999999875  677777753     2


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCcccccccccccccccccc
Q 003296          656 WASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY  735 (833)
Q Consensus       656 ~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~  735 (833)
                      .....-.+.||+.||.|||+  ..+++|++|--+.|+++..|+-|+++|-++.........  .....--..|..|+.+.
T Consensus       103 ~~~v~~Gl~qIl~AL~FL~~--d~~lvHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~~--~~~~~~~~s~~~P~~~~  178 (690)
T KOG1243|consen  103 KEEVCLGLFQILAALSFLND--DCNLVHGNVCKDSVFVNESGEWKLGGLELVSKASGFNAP--AKSLYLIESFDDPEEID  178 (690)
T ss_pred             HHHHHHHHHHHHHHHHHHhc--cCCeeeccEeeeeEEEcCCCcEEEeeeEEEeccccCCcc--cccchhhhcccChhhcC
Confidence            33344457899999999997  457999999999999999999999999887654322110  00111112355666443


Q ss_pred             CCcccccCcchhhHHHHHHHHhC
Q 003296          736 TMRVTMAGNVYSFGVILLELLTG  758 (833)
Q Consensus       736 ~~~~~~~~Dv~S~Gvvl~elltg  758 (833)
                      ...  ...|.|-|||+++|++.|
T Consensus       179 ~s~--~s~D~~~Lg~li~el~ng  199 (690)
T KOG1243|consen  179 PSE--WSIDSWGLGCLIEELFNG  199 (690)
T ss_pred             ccc--cchhhhhHHHHHHHHhCc
Confidence            222  456999999999999999

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.00  E-value=2e-10  Score=89.76  Aligned_cols=59  Identities=34%  Similarity=0.419  Sum_probs=33.0

Q ss_pred             CCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCc
Q 003296           31 GLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNA   89 (833)
Q Consensus        31 ~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~   89 (833)
                      +|++|++++|+|+.+.+..|.++++|++|++++|+|+.+.|..|.++++|++|+|++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555555555555555555555555555555555555555555555555554

...

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.96  E-value=3.6e-09  Score=98.64  Aligned_cols=135  Identities=21%  Similarity=0.230  Sum_probs=101.9

Q ss_pred             cccccCcccEEEEEEcCCCceEEEEEccccc----hhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEee
Q 003296          561 NVELKTRFSTYYKAVMPSGMSYFIKKLNWSD----KIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEY  636 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~----~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey  636 (833)
                      ..+++|+=+.+|.+.+ -|..+++|.-.++.    .....-...+-.+|++++++++--.|-..+=|..+++...|+|||
T Consensus         2 ~~i~~GAEa~i~~~~~-~g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me~   80 (204)
T COG3642           2 DLIKQGAEAIIYLTDF-LGLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVMEY   80 (204)
T ss_pred             chhhCCcceeEEeeec-cCcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEEE
Confidence            3578899999999976 34456666432221    111111235678899999999766776667778888999999999


Q ss_pred             CCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          637 APKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       637 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                      .+|-.|.+.+...         +..++..+-.-+.-||   ..+|||+|+.++||.+..+. +.++|||++..
T Consensus        81 I~G~~lkd~l~~~---------~~~~~r~vG~~vg~lH---~~givHGDLTtsNiIl~~~~-i~~IDfGLg~~  140 (204)
T COG3642          81 IEGELLKDALEEA---------RPDLLREVGRLVGKLH---KAGIVHGDLTTSNIILSGGR-IYFIDFGLGEF  140 (204)
T ss_pred             eCChhHHHHHHhc---------chHHHHHHHHHHHHHH---hcCeecCCCccceEEEeCCc-EEEEECCcccc
Confidence            9999999888752         2456666777778899   88999999999999997654 88999999874

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.95  E-value=4.7e-10  Score=87.71  Aligned_cols=59  Identities=37%  Similarity=0.513  Sum_probs=31.2

Q ss_pred             CCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccCCc
Q 003296           55 SLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANN  113 (833)
Q Consensus        55 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~  113 (833)
                      +|++|++++|+|+.+.+..|.++++|++|+|++|.++.+.|.+|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555555544555555555555555555555545555555555555555554

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.95  E-value=9.3e-11  Score=115.26  Aligned_cols=130  Identities=25%  Similarity=0.274  Sum_probs=94.1

Q ss_pred             CCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEec
Q 003296           30 AGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDL  109 (833)
Q Consensus        30 ~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  109 (833)
                      ..|+.||||+|.|+.+ ..+..-++.++.|++|+|.|..+.  .+..+++|+.||||+|.++ .+...=..+.|.+.|.|
T Consensus       284 q~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchhhh-hhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            4578888888888754 345666788888888888887543  3777888888888888877 44445556778888888


Q ss_pred             cCCcCCccCCccccCCCCCcEEECcCCcCCCCC-CcccccCCccCcccccccccccc
Q 003296          110 SANNLSGSVPDRIGELSKLEVLILSANNLDGRL-PTSLASITTLSRFAANQNKFSGS  165 (833)
Q Consensus       110 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~l~l~~n~l~~~  165 (833)
                      +.|.|...  ..++.|-+|..||+++|+|.... -..+++++.|+.+.+.+|.+.+.
T Consensus       360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            88887633  34677778888888888886432 24677777777777777777643

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.93  E-value=7.8e-09  Score=95.72  Aligned_cols=147  Identities=20%  Similarity=0.226  Sum_probs=108.2

Q ss_pred             CccccccCcccEEEEEEcCCCceEEEEEccccc----hhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          559 PLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSD----KIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       559 ~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~----~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      ...++-+|+-+.|+++.. .|+...||.-..+.    .....-..++-.+|++++.+++--.|....-++.+...-.|+|
T Consensus        11 ~l~likQGAEArv~~~~~-~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~M   89 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSF-SGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIYM   89 (229)
T ss_pred             cceeeeccceeeEeeecc-CCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEEE
Confidence            456788999999999987 67777777542221    1111223567889999999997666666666777777788999


Q ss_pred             eeCCC-CChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC---Cceeccceeeee
Q 003296          635 EYAPK-GTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK---EPQIGDIELCKV  709 (833)
Q Consensus       635 ey~~~-g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~---~~ki~dfgl~~~  709 (833)
                      ||.++ .++.+++................+..+-+.+.-||   ...|||+|+..+||++..++   .+.+.|||++..
T Consensus        90 E~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH---~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~~  165 (229)
T KOG3087|consen   90 EFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLH---DNDIIHGDLTTSNILLRSDGNQITPILIDFGLSSV  165 (229)
T ss_pred             EeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhh---hCCeecccccccceEEecCCCcCceEEEeecchhc
Confidence            99977 47888876543332333333667888888899999   88999999999999997654   347899998754

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.93  E-value=5e-10  Score=132.80  Aligned_cols=202  Identities=20%  Similarity=0.221  Sum_probs=141.2

Q ss_pred             CCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCC--CCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEE
Q 003296            6 GIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNN--LNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEEL   83 (833)
Q Consensus         6 ~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~--l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L   83 (833)
                      +....+.+.+-+|.+..++.-...+.|+.|-+..|.  +..+....|..++.|++||||+|.=-+.+|..++.+-+|++|
T Consensus       521 ~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             chhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            345667888888888887654566689999999996  666667779999999999999987556789999999999999


Q ss_pred             EccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCc--CCCCCCcccccCCccCcccccccc
Q 003296           84 VLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANN--LDGRLPTSLASITTLSRFAANQNK  161 (833)
Q Consensus        84 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~~~~l~~L~~l~l~~n~  161 (833)
                      +|++..++ .+|..+.+|..|.+||+..+.-...+|.....|++|++|.+-...  .+...-..+..+.+|+.+......
T Consensus       601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s  679 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS  679 (889)
T ss_pred             cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence            99999998 889999999999999999988666678888889999999986654  222333344455555555443222


Q ss_pred             ccccCChh----hhhcCCEEecccccccccCCccCCCCCCCCEEecccccCc
Q 003296          162 FSGSVPGG----ITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLE  209 (833)
Q Consensus       162 l~~~~p~~----~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~  209 (833)
                      .....+-.    +....+.+.+..+... ..+..+..+.+|+.|.+.++.+.
T Consensus       680 ~~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  680 VLLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             hHhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCc
Confidence            20000100    0111223333222222 23345666778888888887765

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=1.7e-10  Score=119.64  Aligned_cols=210  Identities=23%  Similarity=0.254  Sum_probs=114.2

Q ss_pred             cCCCCCCEEECCCCCCCCccc-ccccCCCCCCEEeCcCCcCCCCCCc--ccCCCCCCCEEEccCCcCcccCCcc-ccCCC
Q 003296           27 NGFAGLEVLDFSSNNLNGNIN-LQFDELVSLKSLNLSKNKFNGFLPI--NLGKTKALEELVLSGNAFHGEIPKG-IADYR  102 (833)
Q Consensus        27 ~~l~~L~~L~Ls~N~l~~~~~-~~f~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~  102 (833)
                      .++.+|+...|.+..+..... .....|++++.||||+|-|..+.|.  ....+++|+.|+|+.|++....... -..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            356667777777766653221 3455677777777777776654432  2456777777777777765332221 12455


Q ss_pred             CCCEEeccCCcCCc-cCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEeccc
Q 003296          103 NLTLIDLSANNLSG-SVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSY  181 (833)
Q Consensus       103 ~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~  181 (833)
                      .|+.|.|+.|.++. .+-.....+++|+.|+|..|.......                      .+..++..|+.|||++
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~----------------------~~~~i~~~L~~LdLs~  255 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKA----------------------TSTKILQTLQELDLSN  255 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceec----------------------chhhhhhHHhhccccC
Confidence            66666666666652 111223345666666666664222222                      2233344455666666


Q ss_pred             ccccccCC-ccCCCCCCCCEEecccccCccc-CCC-------CCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCC
Q 003296          182 NKLLGVIP-IDLLSHPNLQTIDLSVNMLEGS-LPQ-------NMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDN  252 (833)
Q Consensus       182 N~l~~~~~-~~~~~~~~L~~L~Ls~N~l~~~-~p~-------~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~  252 (833)
                      |++..... ...+.++.|+.|.++.+.+... .|.       ...+.|+.|++..|++...-.-.....+++|+.|.+..
T Consensus       256 N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~  335 (505)
T KOG3207|consen  256 NNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL  335 (505)
T ss_pred             CcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence            65543221 2234556666666666666532 111       12256777777777652211112334467788888888


Q ss_pred             CCCCCC
Q 003296          253 NSFTGM  258 (833)
Q Consensus       253 N~l~~~  258 (833)
                      |.++..
T Consensus       336 n~ln~e  341 (505)
T KOG3207|consen  336 NYLNKE  341 (505)
T ss_pred             cccccc
Confidence            888643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=2.2e-10  Score=118.75  Aligned_cols=159  Identities=20%  Similarity=0.223  Sum_probs=111.3

Q ss_pred             CCCCCCCEEECCCCCCCCcc---cccCCCCCCEEECCCCCCCCccc--ccccCCCCCCEEeCcCCcCCCCCCcc-cCCCC
Q 003296            5 GGIDGLKLLNFSKNELVSLP---TFNGFAGLEVLDFSSNNLNGNIN--LQFDELVSLKSLNLSKNKFNGFLPIN-LGKTK   78 (833)
Q Consensus         5 ~~l~~L~~L~ls~N~l~~i~---~f~~l~~L~~L~Ls~N~l~~~~~--~~f~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~   78 (833)
                      .++.+|+.+.|.+......+   ....|++++.||||.|-+....+  .-...|++|+.|+||.|++....... -..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            35778888888888777654   35678899999999998875433  23567899999999999987433322 23678


Q ss_pred             CCCEEEccCCcCccc-CCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCC-cccccCCccCccc
Q 003296           79 ALEELVLSGNAFHGE-IPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLP-TSLASITTLSRFA  156 (833)
Q Consensus        79 ~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~l~  156 (833)
                      +|+.|.|+.|.++.- +-.....+++|+.|+|..|....+-......+..|+.|||++|++-.... ...+.++.|..|.
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            899999999988731 22234567899999999996444555566778889999999998864321 2344555555555


Q ss_pred             ccccccc
Q 003296          157 ANQNKFS  163 (833)
Q Consensus       157 l~~n~l~  163 (833)
                      ++.+.+.
T Consensus       278 ls~tgi~  284 (505)
T KOG3207|consen  278 LSSTGIA  284 (505)
T ss_pred             ccccCcc
Confidence            5555543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.82  E-value=3.3e-10  Score=114.43  Aligned_cols=41  Identities=27%  Similarity=0.207  Sum_probs=22.2

Q ss_pred             ccCCCCCcEEECcCCcCCCCCCccc----ccCCccCccccccccc
Q 003296          122 IGELSKLEVLILSANNLDGRLPTSL----ASITTLSRFAANQNKF  162 (833)
Q Consensus       122 ~~~l~~L~~L~Ls~N~l~~~~p~~~----~~l~~L~~l~l~~n~l  162 (833)
                      +-..++|++|+||.|.|.-.-+..|    .+++.|++|.+.+|-+
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl  132 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL  132 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence            3345567777777776654333322    3345555555555544

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.79  E-value=1.5e-07  Score=100.44  Aligned_cols=167  Identities=23%  Similarity=0.289  Sum_probs=125.9

Q ss_pred             ccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec----CCceEEEEeeCCC-CC
Q 003296          568 FSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA----SDSAYLFYEYAPK-GT  641 (833)
Q Consensus       568 ~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~----~~~~~lv~ey~~~-g~  641 (833)
                      -.+.||+.. .||..|+.||++ ..+....   ..-..=++.++++.|+|||++.+++..    +..+++||+|.|+ ++
T Consensus       289 ~~Ttyk~~s~~DG~~YvLkRlh-g~r~~~~---nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~T  364 (655)
T KOG3741|consen  289 SITTYKATSNVDGNAYVLKRLH-GDRDQST---NKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPT  364 (655)
T ss_pred             cceeEeeeeccCCceeeeeeec-cccccCc---ccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCch
Confidence            457899986 589999999993 3222221   122345788999999999999998873    4568999999985 68


Q ss_pred             hhhhhhcCC-------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeee
Q 003296          642 LFDVLHGCL-------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK  708 (833)
Q Consensus       642 L~~~l~~~~-------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~  708 (833)
                      |.++-....             ....++...+.++.|++.||.++|   +.|..-+-+.|.+|+++.+.+++|+..|+..
T Consensus       365 L~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIH---ssGLAck~L~~~kIlv~G~~RIriS~C~i~D  441 (655)
T KOG3741|consen  365 LYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIH---SSGLACKTLDLKKILVTGKMRIRISGCGIMD  441 (655)
T ss_pred             HHHHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHH---hcCceeecccHhHeEeeCcceEEEeccccee
Confidence            887643211             124778899999999999999999   6788889999999999999899998888777


Q ss_pred             eeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCC
Q 003296          709 VIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKT  760 (833)
Q Consensus       709 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~  760 (833)
                      ...++.         +       |-+.+   -.+-|.=.||.+++.+.||..
T Consensus       442 vl~~d~---------~-------~~le~---~Qq~D~~~lG~ll~aLAt~~~  474 (655)
T KOG3741|consen  442 VLQEDP---------T-------EPLES---QQQNDLRDLGLLLLALATGTE  474 (655)
T ss_pred             eecCCC---------C-------cchhH---HhhhhHHHHHHHHHHHhhccc
Confidence            664332         0       11111   235688889999999999964

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.78  E-value=5.1e-08  Score=100.44  Aligned_cols=145  Identities=17%  Similarity=0.110  Sum_probs=101.2

Q ss_pred             cccccCcccEEEEEEcCCCceEEEEEccccchh--hhc-----cChhHHHHHHHHHhcCCCCC--cccceEEEec-----
Q 003296          561 NVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKI--FQL-----GSHHKFDKELEVLGKLSNSN--VMTPLAYVLA-----  626 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~--~~~-----~~~~~~~~E~~~l~~l~H~n--iv~~~~~~~~-----  626 (833)
                      +++-......|++... +|+.|.||+.......  ...     .....+.+|.+.+.++..-+  +.+.+++...     
T Consensus        28 e~v~~~~~rrvvr~~~-~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~  106 (268)
T PRK15123         28 EVFRELEGRRTLRFEL-AGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGSNPA  106 (268)
T ss_pred             cEEecCCCceEEEEEE-CCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCc
Confidence            3333344455777766 6788999977322110  000     11225889999998885433  3444566543     


Q ss_pred             CCceEEEEeeCCCC-ChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC-------CCC
Q 003296          627 SDSAYLFYEYAPKG-TLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS-------LKE  698 (833)
Q Consensus       627 ~~~~~lv~ey~~~g-~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~-------~~~  698 (833)
                      ...-++||||+++- +|.+++........+...+..++.+++..++-||   ..+|+|+|++++|||++.       ++.
T Consensus       107 ~~~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH---~~Gi~HgDL~~~NiLl~~~~~~~~~~~~  183 (268)
T PRK15123        107 TRTSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMH---AAGINHRDCYICHFLLHLPFPGREEDLK  183 (268)
T ss_pred             cceeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHH---HCcCccCCCChhhEEEeccccCCCCCce
Confidence            23478999999876 8999886422234556677789999999999999   889999999999999985       467


Q ss_pred             ceeccceeeee
Q 003296          699 PQIGDIELCKV  709 (833)
Q Consensus       699 ~ki~dfgl~~~  709 (833)
                      +.++||+.++.
T Consensus       184 ~~LIDl~r~~~  194 (268)
T PRK15123        184 LSVIDLHRAQI  194 (268)
T ss_pred             EEEEECCcccc
Confidence            88999997753

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.78  E-value=1.1e-09  Score=110.72  Aligned_cols=191  Identities=25%  Similarity=0.338  Sum_probs=130.3

Q ss_pred             ccCCCCCCCEEECCCCCCCCCCCcc----ccCCCCCcEEEccCCccCCCCh-------------hhhCCCCCCcEEEccC
Q 003296          238 TFTSLEKLTYLELDNNSFTGMIPQQ----LGSCRSLTLLNLAQNELNGSLP-------------IQLGSLGILQVMNLQL  300 (833)
Q Consensus       238 ~f~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~p-------------~~~~~l~~L~~L~L~~  300 (833)
                      .+...++|++||||.|-+...-+..    +.++..|++|+|.+|.+...--             ...++-+.|+++...+
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence            3445678888888888876443333    4567888888888887752211             1234456788888888


Q ss_pred             CcCCCc----CchhhcCCCcCceeeccCCcCccc----CccccccCCCCCEEEccCCcccc----ccCccccCCCCCCEE
Q 003296          301 NKLSGE----IPSQFSQLKLLSTMNISWNSLSGS----IPSFLSNLTNLVNLNLRQNNLNG----SIPNSITNMRSLIEL  368 (833)
Q Consensus       301 N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L  368 (833)
                      |++...    +...|...+.|+.+.++.|.|...    +...|..+++|+.|||.+|-++.    .+...+..+++|++|
T Consensus       167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El  246 (382)
T KOG1909|consen  167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL  246 (382)
T ss_pred             cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence            887643    234566778888888888887521    23456778889999999988863    234566778888888


Q ss_pred             EccCCcCCccCCCCcccccceeeccccccccchhhhh-ccCCCCCEEecccCcCccc----cchhccCCCCCCeeeCcCC
Q 003296          369 QLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTF-ARLNGLEVLDLSNNRFSGE----IPQLLAQMPTLTQLLLTNN  443 (833)
Q Consensus       369 ~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~ls~N  443 (833)
                      ++++|.+...-..                  .+-..| ...++|++|.+.+|.|+..    +..+....+.|..|+|++|
T Consensus       247 ~l~dcll~~~Ga~------------------a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN  308 (382)
T KOG1909|consen  247 NLGDCLLENEGAI------------------AFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN  308 (382)
T ss_pred             cccccccccccHH------------------HHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence            8888877522100                  011122 2357899999999998743    3344567889999999999


Q ss_pred             ccc
Q 003296          444 QLS  446 (833)
Q Consensus       444 ~l~  446 (833)
                      .+.
T Consensus       309 ~l~  311 (382)
T KOG1909|consen  309 RLG  311 (382)
T ss_pred             ccc
Confidence            884

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.70  E-value=5.5e-08  Score=94.30  Aligned_cols=129  Identities=22%  Similarity=0.206  Sum_probs=81.4

Q ss_pred             EEEEEEcCCCceEEEEEccccchhh----------------------hccChhHHHHHHHHHhcCCCCC--cccceEEEe
Q 003296          570 TYYKAVMPSGMSYFIKKLNWSDKIF----------------------QLGSHHKFDKELEVLGKLSNSN--VMTPLAYVL  625 (833)
Q Consensus       570 ~vy~~~~~~~~~vavK~~~~~~~~~----------------------~~~~~~~~~~E~~~l~~l~H~n--iv~~~~~~~  625 (833)
                      .||.|..++|..+|||.-+......                      .........+|.+.|.++..-.  +-+.+++  
T Consensus         1 ~Vy~~~~~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~~--   78 (188)
T PF01163_consen    1 DVYHAIDPDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYDY--   78 (188)
T ss_dssp             EEEEEEECTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEEE--
T ss_pred             CEEEEECCCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEEE--
Confidence            4999999999999999764211000                      0001245778999999998664  4444433  


Q ss_pred             cCCceEEEEeeCC--CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHh-hhcCCCCCeeecCCCccceeeCCCCCceec
Q 003296          626 ASDSAYLFYEYAP--KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAF-LHGFTSNPILLLDLSTRNIFLKSLKEPQIG  702 (833)
Q Consensus       626 ~~~~~~lv~ey~~--~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~y-lH~~~~~~iiHrdlk~~Nill~~~~~~ki~  702 (833)
                        +.-+|||||++  |..+.. +...   .++......++.+++..+.. +|   ..+|||+|+.+.||+++++ .+.++
T Consensus        79 --~~~~ivME~I~~~G~~~~~-l~~~---~~~~~~~~~~~~~il~~~~~~~~---~~givHGDLs~~NIlv~~~-~~~iI  148 (188)
T PF01163_consen   79 --NRNVIVMEYIGEDGVPLPR-LKDV---DLSPEEPKELLEEILEEIIKMLH---KAGIVHGDLSEYNILVDDG-KVYII  148 (188)
T ss_dssp             --ETTEEEEE--EETTEEGGC-HHHC---GGGGSTHHHHHHHHHHHHHHHHH---CTTEEESS-STTSEEEETT-CEEE-
T ss_pred             --eCCEEEEEecCCCccchhh-HHhc---cccchhHHHHHHHHHHHHHHHHH---hcCceecCCChhhEEeecc-eEEEE
Confidence              24589999998  544443 3321   11133445567777776655 46   7799999999999999877 89999


Q ss_pred             cceeeeee
Q 003296          703 DIELCKVI  710 (833)
Q Consensus       703 dfgl~~~~  710 (833)
                      |||-+...
T Consensus       149 Df~qav~~  156 (188)
T PF01163_consen  149 DFGQAVDS  156 (188)
T ss_dssp             -GTTEEET
T ss_pred             ecCcceec
Confidence            99987654

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=98.70  E-value=3.9e-09  Score=114.88  Aligned_cols=183  Identities=17%  Similarity=0.074  Sum_probs=136.9

Q ss_pred             ccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCC-cccceEEEecCCceEEEEeeCC
Q 003296          560 LNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSN-VMTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       560 ~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~n-iv~~~~~~~~~~~~~lv~ey~~  638 (833)
                      .+-.++|+++++||.+-...+...++.+..         .....-++++|.+++||| .|..++-+..++..+++|+|+.
T Consensus       247 fh~fvK~altknpKkRptaeklL~h~fvs~---------~l~~rl~~eLLdK~n~P~~~v~~~~d~~~E~~~~i~~~i~s  317 (829)
T KOG0576|consen  247 FHNFVKGALTKNPKKRPTAEKLLQHPFVSQ---------TLSRRLAIELLDKVNNPNPVVRYLEDYDGEDYLWIPMRICS  317 (829)
T ss_pred             HHHHHHHHhcCCCccCCChhhheeceeecc---------chhhHHHHHHHHHccCCCCcccccccCCcccccchhhhhhc
Confidence            355678999999999864444444666621         134556899999999999 8888888888899999999999


Q ss_pred             CC-ChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCC
Q 003296          639 KG-TLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG  717 (833)
Q Consensus       639 ~g-~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~  717 (833)
                      +| +-..-... ....+...+...+...-+++++|+|   +-.=+|||    ||+..+ ...|.+||+....+....   
T Consensus       318 ~~rs~~~~~~~-se~~~~~~~~~~~~r~et~~l~~l~---~~~~~~~d----~~l~s~-~~~~~~~~~v~~~L~~~~---  385 (829)
T KOG0576|consen  318 TGRSSALEMTV-SEIALEQYQFAYPLRKETRPLAELH---SSYKVHRD----NILGSE-EEVKLLDFAVPPQLTRTM---  385 (829)
T ss_pred             CCccccccCCh-hhHhhhhhhhhhhhhhhcccccccc---cccccCcc----cccccc-cccccccccCCcccCccc---
Confidence            87 32222111 1123444555566777889999999   43358998    887754 778999999887765443   


Q ss_pred             ccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCccc
Q 003296          718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVN  763 (833)
Q Consensus       718 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~  763 (833)
                      ...+..+|+.++|||+.....+..+.|+||.|+-..+|.-|-+|-.
T Consensus       386 ~~~t~~~~~~~~~pev~~~~~~~~~p~~~~~~~~~~~~ap~~pPr~  431 (829)
T KOG0576|consen  386 KPRTAIGTPEPLAPEVIQENTIDGCPDSGSLAVSAIQMAPGLPPRS  431 (829)
T ss_pred             ccccCCCCCCCCCchhhcccccccCCCccCCCcchhhcCCCCCCCC
Confidence            2356789999999999999999999999999998888888877653

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.66  E-value=2.2e-08  Score=118.94  Aligned_cols=138  Identities=22%  Similarity=0.319  Sum_probs=106.9

Q ss_pred             CCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCc--CCCCCCcccCCCCCCCEEEccCCcCcccCCcc
Q 003296           20 LVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNK--FNGFLPINLGKTKALEELVLSGNAFHGEIPKG   97 (833)
Q Consensus        20 l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~--l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~   97 (833)
                      +..+|........+...+-+|.+..+... . ..+.|++|-+..|.  +..+.++.|..++.|..|||++|.=-+.+|..
T Consensus       513 ~~~~~~~~~~~~~rr~s~~~~~~~~~~~~-~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~  590 (889)
T KOG4658|consen  513 LSEIPQVKSWNSVRRMSLMNNKIEHIAGS-S-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS  590 (889)
T ss_pred             ccccccccchhheeEEEEeccchhhccCC-C-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH
Confidence            33455556667788888888888754432 2 34479999999986  55555666888999999999988766788999


Q ss_pred             ccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccc
Q 003296           98 IADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQN  160 (833)
Q Consensus        98 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n  160 (833)
                      ++.|-+|++|+|++..++ .+|..+++|.+|.+|++..+.-...+|.....+++|+.|.+..-
T Consensus       591 I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  591 IGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             HhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            999999999999999988 68888999999999999887765556777777888777766543

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.64  E-value=1e-08  Score=113.27  Aligned_cols=151  Identities=19%  Similarity=0.310  Sum_probs=102.9

Q ss_pred             HHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC------CCcc-ccccccccccccccccC
Q 003296          664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS------TGSL-STVAGSVGYIPPEYAYT  736 (833)
Q Consensus       664 ~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~------~~~~-~~~~gt~~y~aPE~~~~  736 (833)
                      .+++.|+.|+|.  +.++||++|.|++|.++..+..|++.|+++........      .... ....-...|.|||++..
T Consensus       106 ~~v~dgl~flh~--sAk~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~~  183 (700)
T KOG2137|consen  106 GNVADGLAFLHR--SAKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLLG  183 (700)
T ss_pred             hcccchhhhhcc--CcceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhcc
Confidence            455699999997  67899999999999999999999999998865543110      0000 11234567999999998


Q ss_pred             CcccccCcchhhHHHHHHHH-hCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCC
Q 003296          737 MRVTMAGNVYSFGVILLELL-TGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVS  815 (833)
Q Consensus       737 ~~~~~~~Dv~S~Gvvl~ell-tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~d  815 (833)
                      ...+.++|+||+||++|-+. .|+.-+...+............        +.......   ...+.++.+-+.+.+..+
T Consensus       184 ~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~~~~~~~~~~--------~~~~~~~s---~~~p~el~~~l~k~l~~~  252 (700)
T KOG2137|consen  184 TTNTPASDVFSLGVLIYTIYNGGKSIIAANGGLLSYSFSRNLL--------NAGAFGYS---NNLPSELRESLKKLLNGD  252 (700)
T ss_pred             ccccccccceeeeeEEEEEecCCcchhhccCCcchhhhhhccc--------cccccccc---ccCcHHHHHHHHHHhcCC
Confidence            88889999999999999998 5555555433222211111111        00000000   234456777788999999


Q ss_pred             CCCCCCHHHHHH
Q 003296          816 PEARPKMKSVLR  827 (833)
Q Consensus       816 P~~Rps~~evl~  827 (833)
                      +..||++.++..
T Consensus       253 ~~~rp~~~~l~~  264 (700)
T KOG2137|consen  253 SAVRPTLDLLLS  264 (700)
T ss_pred             cccCcchhhhhc
Confidence            999998887653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.61  E-value=5.6e-10  Score=122.11  Aligned_cols=128  Identities=32%  Similarity=0.351  Sum_probs=104.1

Q ss_pred             CCCCCEEECCCCCCCCcc-cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296            7 IDGLKLLNFSKNELVSLP-TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL   85 (833)
Q Consensus         7 l~~L~~L~ls~N~l~~i~-~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   85 (833)
                      +..|...++++|.|+.+. ++.-++.|+.|||++|+++...  .+..|++|++|||++|.++.++--...++. |+.|.|
T Consensus       163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence            356888999999999884 5788899999999999998654  788999999999999999866555555666 999999


Q ss_pred             cCCcCcccCCccccCCCCCCEEeccCCcCCccCC-ccccCCCCCcEEECcCCcCC
Q 003296           86 SGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVP-DRIGELSKLEVLILSANNLD  139 (833)
Q Consensus        86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~  139 (833)
                      ++|.++..  ..+.+|.+|+.|||++|-|.+.-. .-++.|..|+.|+|.+|.+-
T Consensus       240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            99998754  467889999999999998875322 22566788899999999874

>PRK09902 hypothetical protein; Provisional

Probab=98.52  E-value=8.6e-07  Score=86.25  Aligned_cols=141  Identities=15%  Similarity=0.075  Sum_probs=103.5

Q ss_pred             ccCcccEEEEEEcCCCceEEEEEcc-ccchhhh-ccChhHHHHHHHHHhcCCCCC--cccceEEEe-cC----CceEEEE
Q 003296          564 LKTRFSTYYKAVMPSGMSYFIKKLN-WSDKIFQ-LGSHHKFDKELEVLGKLSNSN--VMTPLAYVL-AS----DSAYLFY  634 (833)
Q Consensus       564 g~g~~g~vy~~~~~~~~~vavK~~~-~~~~~~~-~~~~~~~~~E~~~l~~l~H~n--iv~~~~~~~-~~----~~~~lv~  634 (833)
                      |+||-+-||+-.. +|+.+-+|+-. .-..... .-.+..|.+|...+.++..-+  +.+.. ++. ..    -.-+||+
T Consensus        27 ~rgG~SgV~r~~~-~g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pv-f~~~~k~~~~~rA~LVT  104 (216)
T PRK09902         27 RRNGMSGVQCVER-NGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIV-FGEAVKIEGEWRALLVT  104 (216)
T ss_pred             CCCCcceEEEEEe-CCcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccc-eeeeeccCCceEEEEEE
Confidence            5688889999876 44479999874 1111111 346788999999999986432  44444 332 21    2368999


Q ss_pred             eeCCC-CChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC--ceeccceeeee
Q 003296          635 EYAPK-GTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE--PQIGDIELCKV  709 (833)
Q Consensus       635 ey~~~-g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~--~ki~dfgl~~~  709 (833)
                      |-+++ -||.+++.+......+...+..+..++++.++-||   ..++.|+|+-+.||+++.++.  ++++||.-++.
T Consensus       105 e~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH---~~Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r~  179 (216)
T PRK09902        105 EDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMH---SVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRR  179 (216)
T ss_pred             EeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHhheeecCCCCeeEEEEEhhccch
Confidence            97764 49999987543345677888899999999999999   889999999999999986666  88888876543

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.46  E-value=6.4e-07  Score=88.93  Aligned_cols=134  Identities=19%  Similarity=0.136  Sum_probs=89.9

Q ss_pred             CccccccCcccEEEEEEcCCCceEEEEEccccc---------hhh---------hccChhHHHHHHHHHhcCCCC--Ccc
Q 003296          559 PLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSD---------KIF---------QLGSHHKFDKELEVLGKLSNS--NVM  618 (833)
Q Consensus       559 ~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~---------~~~---------~~~~~~~~~~E~~~l~~l~H~--niv  618 (833)
                      ..+.||.|.=+.||.|..++|.++|||.=+...         +..         ....+....+|.++|.++.-.  .|-
T Consensus        95 iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~VP  174 (304)
T COG0478          95 IGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVKVP  174 (304)
T ss_pred             hccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCCCC
Confidence            458899999999999999999999999432100         000         011234678899999999533  454


Q ss_pred             cceEEEecCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHH-HHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC
Q 003296          619 TPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY-SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK  697 (833)
Q Consensus       619 ~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~-~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~  697 (833)
                      +.++    .+.-++||||.+|-.|...=-    ..-.....+ .|+..+..+.       ..+|||+|+.+=||+++++|
T Consensus       175 ~P~~----~nRHaVvMe~ieG~eL~~~r~----~~en~~~il~~il~~~~~~~-------~~GiVHGDlSefNIlV~~dg  239 (304)
T COG0478         175 KPIA----WNRHAVVMEYIEGVELYRLRL----DVENPDEILDKILEEVRKAY-------RRGIVHGDLSEFNILVTEDG  239 (304)
T ss_pred             Cccc----cccceeeeehcccceeecccC----cccCHHHHHHHHHHHHHHHH-------HcCccccCCchheEEEecCC
Confidence            4444    356789999999866654310    011222332 2333333322       35799999999999999999


Q ss_pred             Cceeccceee
Q 003296          698 EPQIGDIELC  707 (833)
Q Consensus       698 ~~ki~dfgl~  707 (833)
                      .+.++||--+
T Consensus       240 ~~~vIDwPQ~  249 (304)
T COG0478         240 DIVVIDWPQA  249 (304)
T ss_pred             CEEEEeCccc
Confidence            9999998544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=5.3e-08  Score=96.29  Aligned_cols=188  Identities=25%  Similarity=0.292  Sum_probs=91.2

Q ss_pred             CCCCCEEEccCCcCcc--cCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCC-CcccccCCccC
Q 003296           77 TKALEELVLSGNAFHG--EIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRL-PTSLASITTLS  153 (833)
Q Consensus        77 l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~  153 (833)
                      .+.+++|||.+|.|+.  .+-.-+.+|+.|++|+|+.|.+...+...-..+.+|++|-|.+..+.-.. ...+..++.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            3445555555555542  12222445556666666666555332221133455666666555443222 12334455555


Q ss_pred             ccccccccccccCChhhhhcCCEEecccccccccCCc--cCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCcccc
Q 003296          154 RFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPI--DLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLI  231 (833)
Q Consensus       154 ~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~--~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~  231 (833)
                      .|.++.|.            ++.+++..|.+....|.  ++...+.+..++++-|++...     .|++..+.+..|.+.
T Consensus       150 elHmS~N~------------~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~-----Fpnv~sv~v~e~PlK  212 (418)
T KOG2982|consen  150 ELHMSDNS------------LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI-----FPNVNSVFVCEGPLK  212 (418)
T ss_pred             hhhhccch------------hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh-----cccchheeeecCccc
Confidence            55555543            23344444443321110  111123333334444444322     234555555555444


Q ss_pred             CCCCccccCCCCCCCEEECCCCCCCCC-CCccccCCCCCcEEEccCCccCC
Q 003296          232 GEIPSATFTSLEKLTYLELDNNSFTGM-IPQQLGSCRSLTLLNLAQNELNG  281 (833)
Q Consensus       232 ~~~~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~  281 (833)
                      ..-....+..++.+..|+|+.|+|..- .-+++.++++|..|.+++|.+..
T Consensus       213 ~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  213 TESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             chhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            333334455566667777877777532 12356677777777777777653

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.35  E-value=2.4e-06  Score=85.29  Aligned_cols=128  Identities=24%  Similarity=0.273  Sum_probs=92.5

Q ss_pred             CCceEEEEEcccc---chhhhccChhHHHHHHHHHhcCCCC--CcccceEEEecCC----ceEEEEeeCCCC-Chhhhhh
Q 003296          578 SGMSYFIKKLNWS---DKIFQLGSHHKFDKELEVLGKLSNS--NVMTPLAYVLASD----SAYLFYEYAPKG-TLFDVLH  647 (833)
Q Consensus       578 ~~~~vavK~~~~~---~~~~~~~~~~~~~~E~~~l~~l~H~--niv~~~~~~~~~~----~~~lv~ey~~~g-~L~~~l~  647 (833)
                      .++.+.+|.....   ......-....+.+|...+.++..-  .+.+.+++.+...    ..++|+|++++- +|.+++.
T Consensus        31 ~~~~y~~k~~~~~~~~~~~~~~~~~~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~  110 (206)
T PF06293_consen   31 VGRRYYRKRLWNKLRRDRLRFPLRRSRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQ  110 (206)
T ss_pred             cceEEEECCeechhccchhhhcccchHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHH
Confidence            4566666654211   1011112345788999988888543  3455666666532    358999999984 8999987


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC---Cceeccceeeeee
Q 003296          648 GCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK---EPQIGDIELCKVI  710 (833)
Q Consensus       648 ~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~---~~ki~dfgl~~~~  710 (833)
                      ...  ..+...+..++.++++.++-||   ..+|+|+|+++.|||++.+.   .+.++||+-++..
T Consensus       111 ~~~--~~~~~~~~~ll~~l~~~i~~lH---~~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~  171 (206)
T PF06293_consen  111 QWE--QLDPSQRRELLRALARLIAKLH---DAGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFR  171 (206)
T ss_pred             hhc--ccchhhHHHHHHHHHHHHHHHH---HCcCCCCCCCcccEEEeCCCCceeEEEEcchhceeC
Confidence            522  2566677889999999999999   88999999999999999876   7889999877654

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.34  E-value=5e-06  Score=86.70  Aligned_cols=254  Identities=13%  Similarity=0.101  Sum_probs=145.8

Q ss_pred             CccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEe------cCCc-e
Q 003296          559 PLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVL------ASDS-A  630 (833)
Q Consensus       559 ~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~------~~~~-~  630 (833)
                      ...-+|+|+-+.+|-.--  -...+.|+......       ..-.+-++.|.+. .||-+-.=+.|=.      +++. .
T Consensus        15 ~gr~LgqGgea~ly~l~e--~~d~VAKIYh~Ppp-------a~~aqk~a~la~~p~~p~~~~rvaWPqa~L~G~~~~~~i   85 (637)
T COG4248          15 PGRPLGQGGEADLYTLGE--VRDQVAKIYHAPPP-------AAQAQKVAELAATPDAPLLNYRVAWPQATLHGGRRGKVI   85 (637)
T ss_pred             CCccccCCccceeeecch--hhchhheeecCCCc-------hHHHHHHHHhccCCCCcchhhhhcccHHHhhCCCcccee
Confidence            346789999999996432  11223454421111       1112233344444 4664432122211      1222 4


Q ss_pred             EEEEeeCCCC-ChhhhhhcC----CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccce
Q 003296          631 YLFYEYAPKG-TLFDVLHGC----LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIE  705 (833)
Q Consensus       631 ~lv~ey~~~g-~L~~~l~~~----~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfg  705 (833)
                      -+.|..+++. -..+++...    .-...+|.-.++.++.+|.+.+-||   ..+-+-+|+.++|+|+.+++.+.+.|-.
T Consensus        86 GflmP~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH---~~Gh~vGDVn~~~~lVsd~~~V~LVdsD  162 (637)
T COG4248          86 GFLMPKVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLH---EHGHVVGDVNQNSFLVSDDSKVVLVDSD  162 (637)
T ss_pred             EEecccCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHH---hcCCcccccCccceeeecCceEEEEccc
Confidence            5666666653 222232211    1125789999999999999999999   6677789999999999999999888743


Q ss_pred             eeeeeCCCCCCCcccccccccccccccccc-----CCcccccCcchhhHHHHHHHHhC-CCcccCC-------ccHHHHH
Q 003296          706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAY-----TMRVTMAGNVYSFGVILLELLTG-KTAVNQG-------NELAKWV  772 (833)
Q Consensus       706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvvl~elltg-~~p~~~~-------~~~~~~~  772 (833)
                      --..-..+.   .....+|...|.+||.-.     +..-+...|-|.+||++++++.| +.||.+-       +....-+
T Consensus       163 sfqi~~ng~---~~~cpVg~~eftPPElQ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~~~~ap~p~E~~I  239 (637)
T COG4248         163 SFQINANGT---LHLCPVGVSEFTPPELQTLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIPLISDAPNPLETDI  239 (637)
T ss_pred             ceeeccCCc---eEecccCccccCCHHHhccccccccCCCccccchhHHHHHHHHHhcCCCCCCcccccCCCCCcchhhh
Confidence            222211111   123467899999999654     33456789999999999999887 9999731       1111111


Q ss_pred             HHhhcccccccccccc--ccc--CCchhHHHHHHHHHHHHHhccCCC--CCCCCCHHHHHHHHHhc
Q 003296          773 LRNSAQQDKLDHILDF--NVS--RTSLAVRSQMLTVLKVAVACVSVS--PEARPKMKSVLRMLLNA  832 (833)
Q Consensus       773 ~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~l~~~cl~~d--P~~Rps~~evl~~L~~~  832 (833)
                      ...     .....-+.  ...  +....+.-....+..+..+|+...  |.-|||++.-+..|.++
T Consensus       240 a~g-----~f~ya~~~~~g~~p~P~~~P~~~Lpp~vqAlF~qaF~~~~~~~~RP~a~aW~aAl~al  300 (637)
T COG4248         240 AHG-----RFAYASDQRRGLKPPPRSIPLSMLPPDVQALFQQAFTESGVATPRPTAKAWVAALDAL  300 (637)
T ss_pred             hcc-----eeeechhccCCCCCCCCCCChhhcCHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHH
Confidence            000     00000000  000  011112223445666777887654  56899999888877654

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.31  E-value=1.8e-06  Score=96.38  Aligned_cols=146  Identities=15%  Similarity=0.143  Sum_probs=97.1

Q ss_pred             cccccCcccEEEEEEcCCCceEEEEEccccchhh------------------hc------------------cChhHHHH
Q 003296          561 NVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIF------------------QL------------------GSHHKFDK  604 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~------------------~~------------------~~~~~~~~  604 (833)
                      +-++.++-|.||+|++++|+.||||+..+.-+..                  ..                  ..+-+|.+
T Consensus       131 ~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~~  210 (517)
T COG0661         131 EPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYRR  210 (517)
T ss_pred             CchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHHH
Confidence            5789999999999999999999999885321100                  00                  00123667


Q ss_pred             HHHHHhcCC-----CCCcccceEEEecCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCC
Q 003296          605 ELEVLGKLS-----NSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSN  679 (833)
Q Consensus       605 E~~~l~~l~-----H~niv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~  679 (833)
                      |..-+.+++     .|+|.-..=|+.-.....|+|||++|-.+.+...-. ....+-   ..++..++++.  +-+.-..
T Consensus       211 EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~-~~g~d~---k~ia~~~~~~f--~~q~~~d  284 (517)
T COG0661         211 EAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALK-SAGIDR---KELAELLVRAF--LRQLLRD  284 (517)
T ss_pred             HHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHHHHH-hcCCCH---HHHHHHHHHHH--HHHHHhc
Confidence            777776663     455544444444457789999999998888874321 123442   22333333221  1111134


Q ss_pred             CeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          680 PILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       680 ~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      +++|.|..|.||+++.++..-..|||+.....+
T Consensus       285 gffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~~  317 (517)
T COG0661         285 GFFHADPHPGNILVRSDGRIVLLDFGIVGRLDP  317 (517)
T ss_pred             CccccCCCccceEEecCCcEEEEcCcceecCCH
Confidence            799999999999999999999999999887654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.30  E-value=1.7e-08  Score=110.88  Aligned_cols=57  Identities=26%  Similarity=0.245  Sum_probs=24.6

Q ss_pred             CCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCC
Q 003296           80 LEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLD  139 (833)
Q Consensus        80 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  139 (833)
                      |.+.+.++|.++ ....++.-++.|++|||++|+++...  .+..+++|++|||++|.++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~  222 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR  222 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc
Confidence            334444444443 33333444444444444444444221  3444444444444444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	833
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-37
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		8e-37
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		1e-25
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		2e-25
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		1e-21
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		4e-21
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		1e-20
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		2e-20
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		1e-19
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		2e-19
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-19
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-10
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		8e-11
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		1e-10
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		1e-10
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		1e-10
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		1e-10
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		1e-10
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		1e-10
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		1e-10
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		1e-10
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		1e-10
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		2e-10
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		2e-10
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		2e-10
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		3e-10
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		5e-10
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		6e-10
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		6e-10
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		8e-10
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		9e-10
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		9e-10
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		1e-09
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		1e-09
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		1e-09
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		1e-09
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		1e-09
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		1e-09
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		1e-09
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		1e-09
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		1e-09
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		1e-09
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		1e-09
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		1e-09
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		1e-09
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		2e-09
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		2e-09
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		2e-09
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		2e-09
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		2e-09
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		2e-09
4h58_A	275	Braf In Complex With Compound 3 Length = 275		2e-09
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		2e-09
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		2e-09
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		2e-09
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		3e-09
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		3e-09
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		4e-09
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		4e-09
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		4e-09
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		4e-09
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		4e-09
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		5e-09
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		5e-09
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		5e-09
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		6e-09
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		6e-09
3eyg_A	290	Crystal Structures Of Jak1 And Jak2 Inhibitor Compl		6e-09
4e4l_A	302	Jak1 Kinase (Jh1 Domain) In Complex With Compound 3		6e-09
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		6e-09
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		6e-09
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		7e-09
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		7e-09
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		7e-09
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		7e-09
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		8e-09
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		8e-09
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		8e-09
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		9e-09
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		1e-08
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		1e-08
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		1e-08
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		2e-08
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		2e-08
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		2e-08
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		2e-08
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		2e-08
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		3e-08
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		3e-08
4af3_A	292	Human Aurora B Kinase In Complex With Incenp And Vx		3e-08
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		3e-08
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		4e-08
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		4e-08
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		4e-08
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		5e-08
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		7e-08
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		7e-08
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		8e-08
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		1e-07
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		1e-07
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		1e-07
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		1e-07
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		1e-07
3q4z_A	306	Structure Of Unphosphorylated Pak1 Kinase Domain Le		1e-07
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		2e-07
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		2e-07
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		2e-07
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		3e-07
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		3e-07
1u54_A	291	Crystal Structures Of The Phosphorylated And Unphos		3e-07
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		4e-07
4apc_A	350	Crystal Structure Of Human Nima-Related Kinase 1 (N		4e-07
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		4e-07
4hzs_A	341	Crystal Structure Of Ack1 Kinase Domain With C-term		5e-07
3orm_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain D76a		5e-07
1u46_A	291	Crystal Structure Of The Unphosphorylated Kinase Do		5e-07
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		6e-07
1mru_A	311	Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob		6e-07
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		6e-07
2qlu_A	314	Crystal Structure Of Activin Receptor Type Ii Kinas		6e-07
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		6e-07
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		6e-07
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		7e-07
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		7e-07
1o6y_A	299	Catalytic Domain Of Pknb Kinase From Mycobacterium		7e-07
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		8e-07
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		1e-06
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		1e-06
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		2e-06
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		2e-06
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		2e-06
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		2e-06
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		2e-06
1zy4_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		2e-06
4ewh_B	275	Co-Crystal Structure Of Ack1 With Inhibitor Length		3e-06
3q4t_A	322	Crystal Structure Of Activin Receptor Type-Iia (Acv		3e-06
2a19_B	284	Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Leng		3e-06
4hzr_A	277	Crystal Structure Of Ack1 Kinase Domain Length = 27		3e-06
4id7_A	273	Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-		3e-06
3eqp_B	276	Crystal Structure Of Ack1 With Compound T95 Length		3e-06
1luf_A	343	Crystal Structure Of The Musk Tyrosine Kinase: Insi		4e-06
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		4e-06
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		4e-06
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		6e-05
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		7e-06
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		1e-05
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		1e-05
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		1e-05
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		1e-05
2vrx_A	285	Structure Of Aurora B Kinase In Complex With Zm4474		1e-05
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		1e-05
2bfx_B	284	Mechanism Of Aurora-B Activation By Incenp And Inhi		1e-05
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		1e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		1e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		2e-05
2bfy_A	284	Complex Of Aurora-B With Incenp And Hesperidin. Len		1e-05
1fvr_A	327	Tie2 Kinase Domain Length = 327		2e-05
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		2e-05
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		2e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		2e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		3e-05
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		2e-05
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		2e-05
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		2e-05
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		2e-05
3uiu_A	306	Crystal Structure Of Apo-Pkr Kinase Domain Length =		2e-05
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		2e-05
1zyc_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		2e-05
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		2e-05
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		2e-05
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		2e-05
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		2e-05
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		2e-05
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		2e-05
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		2e-05
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		2e-05
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		2e-05
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		2e-05
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		3e-05
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		3e-05
3d5u_A	317	Crystal Structure Of A Wildtype Polo-Like Kinase 1		3e-05
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		3e-05
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		3e-05
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		5e-05
3kex_A	325	Crystal Structure Of The Catalytically Inactive Kin		6e-05
3lmg_A	344	Crystal Structure Of The Erbb3 Kinase Domain In Com		6e-05
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		6e-05
3c4f_A	302	Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M		6e-05
4fsy_A	279	Crystal Structure Of The Chk1 Length = 279		6e-05
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		6e-05
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		7e-05
4fsz_A	279	Crystal Structure Of The Chk1 Length = 279		7e-05
3gqi_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		7e-05
3igo_A	486	Crystal Structure Of Cryptosporidium Parvum Cdpk1,		7e-05
3gql_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		8e-05
3zgw_A	347	Crystal Structure Of Maternal Embryonic Leucine Zip		8e-05
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		8e-05
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		8e-05
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		8e-05
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		8e-05
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		8e-05
2hog_A	322	Crystal Structure Of Chek1 In Complex With Inhibito		8e-05
3db6_A	301	Crystal Structure Of An Activated (Thr->asp) Polo-L		9e-05
2r0u_A	323	Crystal Structure Of Chek1 In Complex With Inhibito		9e-05
3tt0_A	382	Co-Structure Of Fibroblast Growth Factor Receptor 1		9e-05
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		1e-04
4fsu_A	279	Crystal Structure Of The Chk1 Length = 279		1e-04
4f63_A	309	Crystal Structure Of Human Fibroblast Growth Factor		1e-04
3rhx_B	306	Crystal Structure Of The Catalytic Domain Of Fgfr1		1e-04
4fsn_A	278	Crystal Structure Of The Chk1 Length = 278		1e-04
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		1e-04
3js2_A	317	Crystal Structure Of Minimal Kinase Domain Of Fibro		1e-04
2br1_A	297	Structure-Based Design Of Novel Chk1 Inhibitors: In		1e-04
1ia8_A	289	The 1.7 A Crystal Structure Of Human Cell Cycle Che		1e-04
1zlt_A	295	Crystal Structure Of Chk1 Complexed With A Hymenald		1e-04
4fsm_A	279	Crystal Structure Of The Chk1 Length = 279		1e-04
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		1e-04
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		1e-04
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		1e-04
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		1e-04
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		1e-04
3dfa_A	286	Crystal Structure Of Kinase Domain Of Calcium-depen		1e-04
1fgk_A	310	Crystal Structure Of The Tyrosine Kinase Domain Of		1e-04
4ft3_A	279	Crystal Structure Of The Chk1 Length = 279		1e-04
3d5w_A	317	Crystal Structure Of A Phosphorylated Polo-Like Kin		1e-04
2wei_A	287	Crystal Structure Of The Kinase Domain Of Cryptospo		1e-04
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		1e-04
3d5v_A	317	Crystal Structure Of An Activated (Thr->asp) Polo-L		1e-04
3kxx_A	317	Structure Of The Mutant Fibroblast Growth Factor Re		1e-04
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		1e-04
4fsw_A	279	Crystal Structure Of The Chk1 Length = 279		1e-04
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		2e-04
4hvd_A	314	Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h		2e-04
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		2e-04
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		2e-04
3pjc_A	315	Crystal Structure Of Jak3 Complexed With A Potent A		2e-04
3lxk_A	327	Structural And Thermodynamic Characterization Of Th		2e-04
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		2e-04
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		2e-04
3qd2_B	332	Crsytal Structure Of Mouse Perk Kinase Domain Lengt		2e-04
3txo_A	353	Pkc Eta Kinase In Complex With A Naphthyridine Leng		2e-04
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		2e-04
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		2e-04
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		2e-04
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		2e-04
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		3e-04
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		3e-04
4g31_A	299	Crystal Structure Of Gsk6414 Bound To Perk (R587-R1		3e-04
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		3e-04
2pl0_A	289	Lck Bound To Imatinib Length = 289		3e-04
3o96_A	446	Crystal Structure Of Human Akt1 With An Allosteric		3e-04
2ydj_A	276	Discovery Of Checkpoint Kinase Inhibitor Azd7762 By		3e-04
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		3e-04
1yvj_A	290	Crystal Structure Of The Jak3 Kinase Domain In Comp		4e-04
4ejn_A	446	Crystal Structure Of Autoinhibited Form Of Akt1 In		4e-04
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		4e-04
3pp0_A	338	Crystal Structure Of The Kinase Domain Of Human Her		4e-04
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		4e-04
2r5t_A	373	Crystal Structure Of Inactive Serum And Glucocortic		4e-04
2pz5_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		4e-04
2jam_A	304	Crystal Structure Of Human Calmodulin-Dependent Pro		4e-04
3g2f_A	336	Crystal Structure Of The Kinase Domain Of Bone Morp		4e-04
3fe3_A	328	Crystal Structure Of The Kinase Mark3PAR-1: T211a-S		4e-04
1zys_A	273	Co-Crystal Structure Of Checkpoint Kinase Chk1 With		5e-04
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		5e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		5e-04
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		5e-04
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		5e-04
4fvp_A	289	Crystal Structure Of The Jak2 Pseudokinase Domain (		5e-04
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		6e-04
3a4o_X	286	Lyn Kinase Domain Length = 286		6e-04
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		6e-04
2ogv_A	317	Crystal Structure Of The Autoinhibited Human C-Fms		6e-04
3qa8_A	676	Crystal Structure Of Inhibitor Of Kappa B Kinase Be		6e-04
3rzf_A	677	Crystal Structure Of Inhibitor Of Kappab Kinase Bet		7e-04
1zxe_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		7e-04
2pvf_A	334	Crystal Structure Of Tyrosine Phosphorylated Activa		7e-04
3ot3_A	273	X-Ray Crystal Structure Of Compound 22k Bound To Hu		7e-04
2x8e_A	276	Discovery Of A Novel Class Of Triazolones As Checkp		7e-04
3lcd_A	329	Inhibitor Bound To A Dfg-In Structure Of The Kinase		7e-04
3jvr_A	271	Characterization Of The Chk1 Allosteric Inhibitor B		7e-04
2e9v_A	268	Structure Of H-Chk1 Complexed With A859017 Length =		7e-04
2ghg_A	269	H-Chk1 Complexed With A431994 Length = 269		7e-04
2ayp_A	269	Crystal Structure Of Chk1 With An Indol Inhibitor L		7e-04
2vwi_A	303	Structure Of The Osr1 Kinase, A Hypertension Drug T		7e-04
3cly_A	334	Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase		8e-04
1gzk_A	315	Molecular Mechanism For The Regulation Of Protein K		8e-04
2acx_A	576	Crystal Structure Of G Protein Coupled Receptor Kin		8e-04
4fst_A	269	Crystal Structure Of The Chk1 Length = 269		8e-04
3lm0_A	327	Crystal Structure Of Human SerineTHREONINE KINASE 1		8e-04
3h9r_A	330	Crystal Structure Of The Kinase Domain Of Type I Ac		8e-04
3nyn_A	576	Crystal Structure Of G Protein-Coupled Receptor Kin		8e-04
1mrv_A	339	Crystal Structure Of An Inactive Akt2 Kinase Domain		8e-04
1gzn_A	335	Structure Of Pkb Kinase Domain Length = 335		8e-04
3dak_A	290	Crystal Structure Of Domain-Swapped Osr1 Kinase Dom		8e-04
2i0v_A	335	C-Fms Tyrosine Kinase In Complex With A Quinolone I		9e-04
2yac_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		9e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 137/437 (31%), Positives = 201/437 (45%), Gaps = 37/437 (8%)
Query: 1   MQSCGGIDGLKLLNFSKNELVSLPTFNG---FAGLEVLDFSSNNLNGNINLQFDELVXXX 57
           + S G   GLK LN S N L      +G      LEVLD S+N+++G             
Sbjct: 116 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG------------- 162
Query: 58  XXXXXXXXXXGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGS 117
                       L    G+   L+ L +SGN   G++   ++   NL  +D+S+NN S  
Sbjct: 163 -----ANVVGWVLSDGCGE---LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTG 212
Query: 118 VPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNL 177
           +P  +G+ S L+ L +S N L G    ++++ T L     + N+F G +P    + L+ L
Sbjct: 213 IP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL 271
Query: 178 DLSYNKLLGVIPIDLLSHP--NLQTIDLSVNMLEGSLPQ--NMSPNLVRLRLGTNLLIGE 233
            L+ NK  G IP D LS     L  +DLS N   G++P        L  L L +N   GE
Sbjct: 272 SLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 234 IPSATFTSLEKLTYLELDNNSFTGMIPQQLGS-CRSLTLLNLAQNELNGSLPIQLGS--L 290
           +P  T   +  L  L+L  N F+G +P+ L +   SL  L+L+ N  +G +   L     
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 291 GILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFXXXXXXXXXXXXXXXX 350
             LQ + LQ N  +G+IP   S    L ++++S+N LSG+IPS                 
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 351 XXGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQI--ALNLSSNLFEGPIPTTFARL 408
             G IP  +  +++L  L L  N L+G IP           ++LS+N   G IP    RL
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 409 NGLEVLDLSNNRFSGEI 425
             L +L LSNN FSG I
Sbjct: 511 ENLAILKLSNNSFSGNI 527

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  152 bits (384), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 138/415 (33%), Positives = 194/415 (46%), Gaps = 37/415 (8%)
Query: 6   GIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVXXXXXXXXXXX 65
           G   LK L  S N++      +    LE LD SSNN +  I                   
Sbjct: 176 GCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF----------------- 218
Query: 66  XXGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGEL 125
                   LG   AL+ L +SGN   G+  + I+    L L+++S+N   G +P     L
Sbjct: 219 --------LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PL 268
Query: 126 SKLEVLILSANNLDGRLPTSLA-SITTLSRFAANQNKFSGSVPG--GITRFLRNLDLSYN 182
             L+ L L+ N   G +P  L+ +  TL+    + N F G+VP   G    L +L LS N
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328
Query: 183 KLLGVIPID-LLSHPNLQTIDLSVNMLEGSLPQ---NMSPNLVRLRLGTNLLIGEI-PSA 237
              G +P+D LL    L+ +DLS N   G LP+   N+S +L+ L L +N   G I P+ 
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 238 TFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMN 297
                  L  L L NN FTG IP  L +C  L  L+L+ N L+G++P  LGSL  L+ + 
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 298 LQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFXXXXXXXXXXXXXXXXXXGSIPN 357
           L LN L GEIP +   +K L T+ + +N L+G IPS                   G IP 
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Query: 358 SITNMRSLIELQLGGNQLSGTIP--MMPPRLQIALNLSSNLFEGPIPTTFARLNG 410
            I  + +L  L+L  N  SG IP  +   R  I L+L++NLF G IP    + +G
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score =  115 bits (288), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 131/271 (48%), Gaps = 16/271 (5%)
Query: 568 FSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS 627
           F   YK  +  G    +K+L   ++  Q G   +F  E+E++    + N++    + +  
Sbjct: 51  FGKVYKGRLADGTLVAVKRLK--EERXQ-GGELQFQTEVEMISMAVHRNLLRLRGFCMTP 107
Query: 628 DSAYLFYEYAPKGTLFDVLHGCLENA--LDWASRYSIAVGVAQGLAFLHGFTSNPILLLD 685
               L Y Y   G++   L    E+   LDW  R  IA+G A+GLA+LH      I+  D
Sbjct: 108 TERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRD 167
Query: 686 LSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNV 745
           +   NI L    E  +GD  L K++D  K       V G++G+I PEY  T + +   +V
Sbjct: 168 VKAANILLDEEFEAVVGDFGLAKLMD-YKDXHVXXAVRGTIGHIAPEYLSTGKSSEKTDV 226
Query: 746 YSFGVILLELLTGKTAVNQGN-------ELAKWVLRNSAQQDKLDHILDFNVSRTSLAVR 798
           + +GV+LLEL+TG+ A +           L  WV +   ++ KL+ ++D ++        
Sbjct: 227 FGYGVMLLELITGQRAFDLARLANDDDVMLLDWV-KGLLKEKKLEALVDVDLQGNYKDEE 285
Query: 799 SQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
            + L  ++VA+ C   SP  RPKM  V+RML
Sbjct: 286 VEQL--IQVALLCTQSSPMERPKMSEVVRML 314

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score =  114 bits (286), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 128/271 (47%), Gaps = 16/271 (5%)
Query: 568 FSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS 627
           F   YK  +  G    +K+L    +    G   +F  E+E++    + N++    + +  
Sbjct: 43  FGKVYKGRLADGXLVAVKRLK---EERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP 99
Query: 628 DSAYLFYEYAPKGTLFDVLHGCLENA--LDWASRYSIAVGVAQGLAFLHGFTSNPILLLD 685
               L Y Y   G++   L    E+   LDW  R  IA+G A+GLA+LH      I+  D
Sbjct: 100 TERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRD 159
Query: 686 LSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNV 745
           +   NI L    E  +GD  L K++D  K       V G +G+I PEY  T + +   +V
Sbjct: 160 VKAANILLDEEFEAVVGDFGLAKLMD-YKDXHVXXAVRGXIGHIAPEYLSTGKSSEKTDV 218
Query: 746 YSFGVILLELLTGKTAVNQGN-------ELAKWVLRNSAQQDKLDHILDFNVSRTSLAVR 798
           + +GV+LLEL+TG+ A +           L  WV +   ++ KL+ ++D ++        
Sbjct: 219 FGYGVMLLELITGQRAFDLARLANDDDVMLLDWV-KGLLKEKKLEALVDVDLQGNYKDEE 277
Query: 799 SQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
            + L  ++VA+ C   SP  RPKM  V+RML
Sbjct: 278 VEQL--IQVALLCTQSSPMERPKMSEVVRML 306

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 112/232 (48%), Gaps = 7/232 (3%)
Query: 600 HKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENA--LDWA 657
            +FD+E++V+ K  + N++  L +    D   L Y Y P G+L D L  CL+    L W 
Sbjct: 75  QQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRL-SCLDGTPPLSWH 133
Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
            R  IA G A G+ FLH    N  +  D+ + NI L      +I D  L +  +    T 
Sbjct: 134 MRCKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTV 190
Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSA 777
             S + G+  Y+ PE A    +T   ++YSFGV+LLE++TG  AV++  E    +     
Sbjct: 191 MXSRIVGTTAYMAPE-ALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEE 249
Query: 778 QQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
            +D+   I D+   + + A  + +  +  VA  C+      RP +K V ++L
Sbjct: 250 IEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLL 301

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score =  100 bits (248), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 7/232 (3%)
Query: 600 HKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENA--LDWA 657
            +FD+E++V+ K  + N++  L +    D   L Y Y P G+L D L  CL+    L W 
Sbjct: 75  QQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRL-SCLDGTPPLSWH 133
Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
            R  IA G A G+ FLH    N  +  D+ + NI L      +I D  L +  +    T 
Sbjct: 134 MRCKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTV 190
Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSA 777
               + G+  Y+ PE A    +T   ++YSFGV+LLE++TG  AV++  E    +     
Sbjct: 191 MXXRIVGTTAYMAPE-ALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEE 249
Query: 778 QQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
            +D+   I D+   + + A  + +  +  VA  C+      RP +K V ++L
Sbjct: 250 IEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLL 301

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 108/231 (46%), Gaps = 7/231 (3%)
Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENA--LDWAS 658
           +FD+E++V  K  + N++  L +    D   L Y Y P G+L D L  CL+    L W  
Sbjct: 67  QFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRL-SCLDGTPPLSWHX 125
Query: 659 RYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS 718
           R  IA G A G+ FLH    N  +  D+ + NI L      +I D  L +  +       
Sbjct: 126 RCKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVX 182
Query: 719 LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQ 778
            S + G+  Y  PE A    +T   ++YSFGV+LLE++TG  AV++  E    +      
Sbjct: 183 XSRIVGTTAYXAPE-ALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEI 241
Query: 779 QDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
           +D+   I D+   + + A  + +     VA  C+      RP +K V ++L
Sbjct: 242 EDEEKTIEDYIDKKXNDADSTSVEAXYSVASQCLHEKKNKRPDIKKVQQLL 292

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 110/231 (47%), Gaps = 7/231 (3%)
Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENA--LDWAS 658
           +FD+E++V+ K  + N++  L +    D   L Y Y P G+L D L  CL+    L W  
Sbjct: 70  QFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRL-SCLDGTPPLSWHM 128
Query: 659 RYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS 718
           R  IA G A G+ FLH    N  +  D+ + NI L      +I D  L +  +       
Sbjct: 129 RCKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVM 185
Query: 719 LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQ 778
              + G+  Y+ PE A    +T   ++YSFGV+LLE++TG  AV++  E    +      
Sbjct: 186 XXRIVGTTAYMAPE-ALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEI 244
Query: 779 QDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
           +D+   I D+   + + A  + +  +  VA  C+      RP +K V ++L
Sbjct: 245 EDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLL 295

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 103/209 (49%), Gaps = 15/209 (7%)
Query: 632 LFYEYAPKGTLFDVLHGCL--ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTR 689
           L Y+Y   G L   L+G      ++ W  R  I +G A+GL +LH   +  I+  D+ + 
Sbjct: 112 LIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLH---TRAIIHRDVKSI 168
Query: 690 NIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFG 749
           NI L     P+I D  + K       T     V G++GYI PEY    R+T   +VYSFG
Sbjct: 169 NILLDENFVPKITDFGISKKGTELDQTHLXXVVKGTLGYIDPEYFIKGRLTEKSDVYSFG 228
Query: 750 VILLELLTGKTAVNQG-----NELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTV 804
           V+L E+L  ++A+ Q        LA+W +  S    +L+ I+D N++     +R + L  
Sbjct: 229 VVLFEVLCARSAIVQSLPREMVNLAEWAV-ESHNNGQLEQIVDPNLADK---IRPESLRK 284
Query: 805 L-KVAVACVSVSPEARPKMKSVLRMLLNA 832
               AV C+++S E RP M  VL  L  A
Sbjct: 285 FGDTAVKCLALSSEDRPSMGDVLWKLEYA 313

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 103/209 (49%), Gaps = 15/209 (7%)
Query: 632 LFYEYAPKGTLFDVLHGC--LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTR 689
           L Y+Y   G L   L+G      ++ W  R  I +G A+GL +LH   +  I+  D+ + 
Sbjct: 112 LIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLH---TRAIIHRDVKSI 168
Query: 690 NIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFG 749
           NI L     P+I D  + K       T     V G++GYI PEY    R+T   +VYSFG
Sbjct: 169 NILLDENFVPKITDFGISKKGTELGQTHLXXVVKGTLGYIDPEYFIKGRLTEKSDVYSFG 228
Query: 750 VILLELLTGKTAVNQG-----NELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTV 804
           V+L E+L  ++A+ Q        LA+W +  S    +L+ I+D N++     +R + L  
Sbjct: 229 VVLFEVLCARSAIVQSLPREMVNLAEWAV-ESHNNGQLEQIVDPNLADK---IRPESLRK 284
Query: 805 L-KVAVACVSVSPEARPKMKSVLRMLLNA 832
               AV C+++S E RP M  VL  L  A
Sbjct: 285 FGDTAVKCLALSSEDRPSMGDVLWKLEYA 313

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 121/237 (51%), Gaps = 17/237 (7%)
Query: 107 IDLSANNLSGS--VPDRIGELSKLEVLILSA-NNLDGRLPTSLASITTLSRFAANQNKFS 163
           +DLS  NL     +P  +  L  L  L +   NNL G +P ++A +T L          S
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 164 GSVPGGITRF--LRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQN---MSP 218
           G++P  +++   L  LD SYN L G +P  + S PNL  I    N + G++P +    S 
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 219 NLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNE 278
               + +  N L G+IP  TF +L  L +++L  N   G      GS ++   ++LA+N 
Sbjct: 175 LFTSMTISRNRLTGKIP-PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN- 231
Query: 279 LNGSLPIQLGSLGI---LQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIP 332
              SL   LG +G+   L  ++L+ N++ G +P   +QLK L ++N+S+N+L G IP
Sbjct: 232 ---SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 80/170 (47%), Gaps = 29/170 (17%)
Query: 259 IPQQLGSCRSLTLLNLAQ-NELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLL 317
           IP  L +   L  L +   N L G +P  +  L  L  + +    +SG IP   SQ+K L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 318 STMNISWNSLSGSIPSFXXXXXXXXXXXXXXXXXXGSIPNSITNMRSLIELQLGGNQLSG 377
            T++ S+N+LSG++P                         SI+++ +L+ +   GN++SG
Sbjct: 128 VTLDFSYNALSGTLPP------------------------SISSLPNLVGITFDGNRISG 163
Query: 378 TIPMMP---PRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGE 424
            IP       +L  ++ +S N   G IP TFA LN L  +DLS N   G+
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD 212

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 7/159 (4%)
Query: 602 FDKELEVLGKLSNSNVMT--PLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
           F++E+E+L  L + N++    + Y     +  L  EY P G+L D L    E  +D    
Sbjct: 61  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQAHAER-IDHIKL 119
Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
                 + +G+ +L    +   +  DL+TRNI +++    +IGD  L KV+   K    +
Sbjct: 120 LQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKV 176
Query: 720 STVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                S + +  PE     + ++A +V+SFGV+L EL T
Sbjct: 177 KEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 215

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 7/159 (4%)
Query: 602 FDKELEVLGKLSNSNVMT--PLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
           F++E+E+L  L + N++    + Y     +  L  EY P G+L D L    E  +D    
Sbjct: 76  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER-IDHIKL 134
Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
                 + +G+ +L    +   +  DL+TRNI +++    +IGD  L KV+   K    +
Sbjct: 135 LQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKV 191
Query: 720 STVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                S + +  PE     + ++A +V+SFGV+L EL T
Sbjct: 192 KEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 230

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 7/159 (4%)
Query: 602 FDKELEVLGKLSNSNVMT--PLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
           F++E+E+L  L + N++    + Y     +  L  EY P G+L D L    E  +D    
Sbjct: 76  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER-IDHIKL 134
Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
                 + +G+ +L    +   +  DL+TRNI +++    +IGD  L KV+   K    +
Sbjct: 135 LQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKV 191
Query: 720 STVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                S + +  PE     + ++A +V+SFGV+L EL T
Sbjct: 192 KEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 230

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 7/159 (4%)
Query: 602 FDKELEVLGKLSNSNVMT--PLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
           F++E+E+L  L + N++    + Y     +  L  EY P G+L D L    E  +D    
Sbjct: 61  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER-IDHIKL 119
Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
                 + +G+ +L    +   +  DL+TRNI +++    +IGD  L KV+   K    +
Sbjct: 120 LQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKV 176
Query: 720 STVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                S + +  PE     + ++A +V+SFGV+L EL T
Sbjct: 177 KEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 215

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 7/159 (4%)
Query: 602 FDKELEVLGKLSNSNVMTP--LAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
           F++E+E+L  L + N++    + Y     +  L  EY P G+L D L    E  +D    
Sbjct: 57  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER-IDHIKL 115
Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
                 + +G+ +L    +   +  DL+TRNI +++    +IGD  L KV+   K    +
Sbjct: 116 LQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKV 172
Query: 720 STVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                S + +  PE     + ++A +V+SFGV+L EL T
Sbjct: 173 KEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 211

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 7/159 (4%)
Query: 602 FDKELEVLGKLSNSNVMT--PLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
           F++E+E+L  L + N++    + Y     +  L  EY P G+L D L    E  +D    
Sbjct: 58  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER-IDHIKL 116
Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
                 + +G+ +L    +   +  DL+TRNI +++    +IGD  L KV+   K    +
Sbjct: 117 LQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKV 173
Query: 720 STVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                S + +  PE     + ++A +V+SFGV+L EL T
Sbjct: 174 KEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 212

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 7/159 (4%)
Query: 602 FDKELEVLGKLSNSNVMT--PLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
           F++E+E+L  L + N++    + Y     +  L  EY P G+L D L    E  +D    
Sbjct: 65  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER-IDHIKL 123
Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
                 + +G+ +L    +   +  DL+TRNI +++    +IGD  L KV+   K    +
Sbjct: 124 LQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKV 180
Query: 720 STVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                S + +  PE     + ++A +V+SFGV+L EL T
Sbjct: 181 KEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 219

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 7/159 (4%)
Query: 602 FDKELEVLGKLSNSNVMT--PLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
           F++E+E+L  L + N++    + Y     +  L  EY P G+L D L    E  +D    
Sbjct: 58  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER-IDHIKL 116
Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
                 + +G+ +L    +   +  DL+TRNI +++    +IGD  L KV+   K    +
Sbjct: 117 LQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKV 173
Query: 720 STVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                S + +  PE     + ++A +V+SFGV+L EL T
Sbjct: 174 KEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 212

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 7/159 (4%)
Query: 602 FDKELEVLGKLSNSNVMT--PLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
           F++E+E+L  L + N++    + Y     +  L  EY P G+L D L    E  +D    
Sbjct: 63  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER-IDHIKL 121
Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
                 + +G+ +L    +   +  DL+TRNI +++    +IGD  L KV+   K    +
Sbjct: 122 LQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKV 178
Query: 720 STVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                S + +  PE     + ++A +V+SFGV+L EL T
Sbjct: 179 KEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 217

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 7/159 (4%)
Query: 602 FDKELEVLGKLSNSNVMT--PLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
           F++E+E+L  L + N++    + Y     +  L  EY P G+L D L    E  +D    
Sbjct: 56  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER-IDHIKL 114
Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
                 + +G+ +L    +   +  DL+TRNI +++    +IGD  L KV+   K    +
Sbjct: 115 LQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKV 171
Query: 720 STVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                S + +  PE     + ++A +V+SFGV+L EL T
Sbjct: 172 KEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 210

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 7/159 (4%)
Query: 602 FDKELEVLGKLSNSNVMT--PLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
           F++E+E+L  L + N++    + Y     +  L  EY P G+L D L    E  +D    
Sbjct: 62  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER-IDHIKL 120
Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
                 + +G+ +L    +   +  DL+TRNI +++    +IGD  L KV+   K    +
Sbjct: 121 LQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKV 177
Query: 720 STVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                S + +  PE     + ++A +V+SFGV+L EL T
Sbjct: 178 KEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 216

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 7/159 (4%)
Query: 602 FDKELEVLGKLSNSNVMT--PLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
           F++E+E+L  L + N++    + Y     +  L  EY P G+L D L    E  +D    
Sbjct: 64  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER-IDHIKL 122
Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
                 + +G+ +L    +   +  DL+TRNI +++    +IGD  L KV+   K    +
Sbjct: 123 LQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKV 179
Query: 720 STVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                S + +  PE     + ++A +V+SFGV+L EL T
Sbjct: 180 KEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 218

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 7/159 (4%)
Query: 602 FDKELEVLGKLSNSNVMT--PLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
           F++E+E+L  L + N++    + Y     +  L  EY P G+L D L    E  +D    
Sbjct: 89  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER-IDHIKL 147
Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
                 + +G+ +L    +   +  DL+TRNI +++    +IGD  L KV+   K    +
Sbjct: 148 LQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKV 204
Query: 720 STVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                S + +  PE     + ++A +V+SFGV+L EL T
Sbjct: 205 KEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 243

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 7/159 (4%)
Query: 602 FDKELEVLGKLSNSNVMT--PLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
           F++E+E+L  L + N++    + Y     +  L  EY P G+L D L    E  +D    
Sbjct: 58  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER-IDHIKL 116
Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
                 + +G+ +L    +   +  DL+TRNI +++    +IGD  L KV+   K    +
Sbjct: 117 LQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKV 173
Query: 720 STVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                S + +  PE     + ++A +V+SFGV+L EL T
Sbjct: 174 KEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 212

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 119/266 (44%), Gaps = 26/266 (9%)
Query: 568 FSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS 627
           F T ++A    G    +K L   D  F     ++F +E+ ++ +L + N++  +  V   
Sbjct: 50  FGTVHRAEW-HGSDVAVKILMEQD--FHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQP 106
Query: 628 DSAYLFYEYAPKGTLFDVLH--GCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLD 685
            +  +  EY  +G+L+ +LH  G  E  LD   R S+A  VA+G+ +LH   + PI+  D
Sbjct: 107 PNLSIVTEYLSRGSLYRLLHKSGAREQ-LDERRRLSMAYDVAKGMNYLHN-RNPPIVHRD 164
Query: 686 LSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST--VAGSVGYIPPEYAYTMRVTMAG 743
           L + N+ +      ++ D  L ++    K++  L +   AG+  ++ PE           
Sbjct: 165 LKSPNLLVDKKYTVKVCDFGLSRL----KASXFLXSKXAAGTPEWMAPEVLRDEPSNEKS 220
Query: 744 NVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLT 803
           +VYSFGVIL EL T +           W   N AQ   +   + F   R  +  R+    
Sbjct: 221 DVYSFGVILWELATLQQP---------WGNLNPAQ---VVAAVGFKCKRLEIP-RNLNPQ 267
Query: 804 VLKVAVACVSVSPEARPKMKSVLRML 829
           V  +   C +  P  RP   +++ +L
Sbjct: 268 VAAIIEGCWTNEPWKRPSFATIMDLL 293

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 8/161 (4%)
Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYS 661
           F  E+ VL K  + N++  + Y  A   A +  ++    +L+  LH  +E   +      
Sbjct: 51  FKNEVGVLRKTRHVNILLFMGYSTAPQLA-IVTQWCEGSSLYHHLH-IIETKFEMIKLID 108
Query: 662 IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST 721
           IA   AQG+ +LH   +  I+  DL + NIFL      +IGD  L  V      +     
Sbjct: 109 IARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQ 165
Query: 722 VAGSVGYIPPEYAYTMR---VTMAGNVYSFGVILLELLTGK 759
           ++GS+ ++ PE          +   +VY+FG++L EL+TG+
Sbjct: 166 LSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 206

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 112/243 (46%), Gaps = 23/243 (9%)
Query: 591 DKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLH--G 648
           ++ F     ++F +E+ ++ +L + N++  +  V    +  +  EY  +G+L+ +LH  G
Sbjct: 70  EQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSG 129
Query: 649 CLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK 708
             E  LD   R S+A  VA+G+ +LH   + PI+  +L + N+ +      ++ D  L +
Sbjct: 130 AREQ-LDERRRLSMAYDVAKGMNYLHN-RNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSR 187
Query: 709 VIDPSKSTGSLST--VAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGN 766
           +    K++  LS+   AG+  ++ PE           +VYSFGVIL EL T +       
Sbjct: 188 L----KASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQP----- 238
Query: 767 ELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVL 826
               W   N AQ   +   + F   R  +  R+    V  +   C +  P  RP   +++
Sbjct: 239 ----WGNLNPAQ---VVAAVGFKCKRLEIP-RNLNPQVAAIIEGCWTNEPWKRPSFATIM 290
Query: 827 RML 829
            +L
Sbjct: 291 DLL 293

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 98/243 (40%), Gaps = 36/243 (14%)
Query: 594 FQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENA 653
           F   +   F KE++V+  L + NV+  +  +          EY   GTL  ++   +++ 
Sbjct: 46  FDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKS-MDSQ 104
Query: 654 LDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS 713
             W+ R S A  +A G+A+LH      I+  DL++ N  ++  K   + D  L +++   
Sbjct: 105 YPWSQRVSFAKDIASGMAYLHSMN---IIHRDLNSHNCLVRENKNVVVADFGLARLMVDE 161
Query: 714 KST------------GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTA 761
           K+                 TV G+  ++ PE           +V+SFG++L E++     
Sbjct: 162 KTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIG---- 217
Query: 762 VNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVR----SQMLTVLKVAVACVSVSPE 817
                       R +A  D L   +DF ++      R    +   +   + V C  + PE
Sbjct: 218 ------------RVNADPDYLPRTMDFGLNVRGFLDRYCPPNCPPSFFPITVRCCDLDPE 265
Query: 818 ARP 820
            RP
Sbjct: 266 KRP 268

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 9/163 (5%)
Query: 597 GSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDW 656
           G  H+  +E+E+   L + N++    Y   +   YL  EYAP+G ++  L     +  D 
Sbjct: 55  GVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQKL--SKFDE 112
Query: 657 ASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST 716
               +    +A  L++ H   S  ++  D+   N+ L S  E +I D         S+ T
Sbjct: 113 QRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT 169
Query: 717 GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
               T+ G++ Y+PPE           +++S GV+  E L GK
Sbjct: 170 ----TLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 208

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 87/204 (42%), Gaps = 12/204 (5%)
Query: 556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS 615
           +  PL    K +F   Y A   +       K+ +  ++ + G  H+  +E+E+   L + 
Sbjct: 12  IGRPLG---KGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 616 NVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHG 675
           N++    Y   S   YL  EYAP GT++  L     +  D     +    +A  L++ H 
Sbjct: 69  NILRLYGYFHDSTRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCH- 125
Query: 676 FTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY 735
             S  ++  D+   N+ L S  E +I D     V  PS    +L    G++ Y+PPE   
Sbjct: 126 --SKKVIHRDIKPENLLLGSAGELKIADFGW-SVHAPSSRRAAL---CGTLDYLPPEMIE 179
Query: 736 TMRVTMAGNVYSFGVILLELLTGK 759
                   +++S GV+  E L GK
Sbjct: 180 GRMHDEKVDLWSLGVLCYEFLVGK 203

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 9/163 (5%)
Query: 597 GSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDW 656
           G  H+  +E+E+   L + N++    Y   +   YL  EYAP GT++  L     +  D 
Sbjct: 67  GVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDE 124
Query: 657 ASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST 716
               +    +A  L++ H   S  ++  D+   N+ L S  E +I D         S+ T
Sbjct: 125 QRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT 181
Query: 717 GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
               T+ G++ Y+PPE           +++S GV+  E L GK
Sbjct: 182 ----TLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 220

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 25/232 (10%)
Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYS 661
           F  E+ VL K  + N++  + Y      A +  ++    +L+  LH   E   +      
Sbjct: 55  FKNEVGVLRKTRHVNILLFMGYSTKPQLA-IVTQWCEGSSLYHHLHAS-ETKFEMKKLID 112
Query: 662 IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST 721
           IA   A+G+ +LH   +  I+  DL + NIFL      +IGD  L  V      +     
Sbjct: 113 IARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATVKSRWSGSHQFEQ 169
Query: 722 VAGSVGYIPPEYAYTMR---VTMAGNVYSFGVILLELLTGK---TAVNQGNELAKWVLRN 775
           ++GS+ ++ PE          +   +VY+FG++L EL+TG+   + +N  +++ + V R 
Sbjct: 170 LSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRG 229
Query: 776 SAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVA-CVSVSPEARPKMKSVL 826
           S   D         +S+    VRS     +K  +A C+    + RP    +L
Sbjct: 230 SLSPD---------LSK----VRSNCPKRMKRLMAECLKKKRDERPSFPRIL 268

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 9/163 (5%)
Query: 597 GSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDW 656
           G  H+  +E+E+   L + N++    Y   +   YL  EYAP GT++  L     +  D 
Sbjct: 51  GVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDE 108
Query: 657 ASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST 716
               +    +A  L++ H   S  ++  D+   N+ L S  E +I D         S+ T
Sbjct: 109 QRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSCHAPSSRRT 165
Query: 717 GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
               T++G++ Y+PPE           +++S GV+  E L GK
Sbjct: 166 ----TLSGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 204

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 9/163 (5%)
Query: 597 GSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDW 656
           G  H+  +E+E+   L + N++    Y   +   YL  EYAP GT++  L     +  D 
Sbjct: 55  GVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDE 112
Query: 657 ASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST 716
               +    +A  L++ H   S  ++  D+   N+ L S  E +I D         S+ T
Sbjct: 113 QRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT 169
Query: 717 GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
               T+ G++ Y+PPE           +++S GV+  E L GK
Sbjct: 170 ----TLCGTLDYLPPEXIEGRXHDEKVDLWSLGVLCYEFLVGK 208

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 9/195 (4%)
Query: 565 KTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYV 624
           K +F   Y A           K+ +  ++ + G  H+  +E+E+   L + N++    Y 
Sbjct: 44  KGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF 103
Query: 625 LASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLL 684
             +   YL  EYAP GT++  L     +  D     +    +A  L++ H   S  ++  
Sbjct: 104 HDATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCH---SKRVIHR 158
Query: 685 DLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGN 744
           D+   N+ L S  E +I D         S+ T    T+ G++ Y+PPE           +
Sbjct: 159 DIKPENLLLGSAGELKIADFGWSVHAPSSRRT----TLCGTLDYLPPEMIEGRMHDEKVD 214
Query: 745 VYSFGVILLELLTGK 759
           ++S GV+  E L GK
Sbjct: 215 LWSLGVLCYEFLVGK 229

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 12/204 (5%)
Query: 556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS 615
           +  PL    K +F   Y A           K+ +  ++ + G  H+  +E+E+   L + 
Sbjct: 12  IGRPLG---KGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 616 NVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHG 675
           N++    Y   +   YL  EYAP GT++  L     +  D     +    +A  L++ H 
Sbjct: 69  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCH- 125
Query: 676 FTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY 735
             S  ++  D+   N+ L S  E +I D         S+ T    T+ G++ Y+PPE   
Sbjct: 126 --SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT----TLCGTLDYLPPEMIE 179
Query: 736 TMRVTMAGNVYSFGVILLELLTGK 759
                   +++S GV+  E L GK
Sbjct: 180 GRMHDEKVDLWSLGVLCYEFLVGK 203

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 7/159 (4%)
Query: 602 FDKELEVLGKLSNSNVMT--PLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
           F++E+E+L  L + N++    + Y     +  L  EY P G+L D L    E  +D    
Sbjct: 59  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER-IDHIKL 117
Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
                 + +G+ +L    +   +  +L+TRNI +++    +IGD  L KV+   K    +
Sbjct: 118 LQYTSQICKGMEYL---GTKRYIHRNLATRNILVENENRVKIGDFGLTKVLPQDKEYYKV 174
Query: 720 STVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                S + +  PE     + ++A +V+SFGV+L EL T
Sbjct: 175 KEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 213

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 9/163 (5%)
Query: 597 GSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDW 656
           G  H+  +E+E+   L + N++    Y   +   YL  EYAP GT++  L     +  D 
Sbjct: 53  GVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDE 110
Query: 657 ASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST 716
               +    +A  L++ H   S  ++  D+   N+ L S  E +I D         S+ T
Sbjct: 111 QRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT 167
Query: 717 GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
               T+ G++ Y+PPE           +++S GV+  E L GK
Sbjct: 168 ----TLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 206

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 8/161 (4%)
Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYS 661
           F  E+ VL K  + N++  + Y      A +  ++    +L+  LH  +E   +      
Sbjct: 79  FKNEVGVLRKTRHVNILLFMGYSTKPQLA-IVTQWCEGSSLYHHLH-IIETKFEMIKLID 136
Query: 662 IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST 721
           IA   AQG+ +LH   +  I+  DL + NIFL      +IGD  L  V      +     
Sbjct: 137 IARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQ 193
Query: 722 VAGSVGYIPPEYAYTMR---VTMAGNVYSFGVILLELLTGK 759
           ++GS+ ++ PE          +   +VY+FG++L EL+TG+
Sbjct: 194 LSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 234

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 8/161 (4%)
Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYS 661
           F  E+ VL K  + N++  + Y      A +  ++    +L+  LH  +E   +      
Sbjct: 78  FKNEVGVLRKTRHVNILLFMGYSTKPQLA-IVTQWCEGSSLYHHLH-IIETKFEMIKLID 135
Query: 662 IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST 721
           IA   AQG+ +LH   +  I+  DL + NIFL      +IGD  L  V      +     
Sbjct: 136 IARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQ 192
Query: 722 VAGSVGYIPPEYAYTMR---VTMAGNVYSFGVILLELLTGK 759
           ++GS+ ++ PE          +   +VY+FG++L EL+TG+
Sbjct: 193 LSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 233

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 9/163 (5%)
Query: 597 GSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDW 656
           G  H+  +E+E+   L + N++    Y   +   YL  EYAP GT++  L     +  D 
Sbjct: 55  GVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDE 112
Query: 657 ASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST 716
               +    +A  L++ H   S  ++  D+   N+ L S  E +I D         S+ T
Sbjct: 113 QRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT 169
Query: 717 GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
               T+ G++ Y+PPE           +++S GV+  E L GK
Sbjct: 170 ----TLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 208

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 7/159 (4%)
Query: 602 FDKELEVLGKLSNSNVMT--PLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
           F++E+E+L  L + N++    + Y     +  L  E+ P G+L + L    E  +D    
Sbjct: 61  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEFLPYGSLREYLQKHKER-IDHIKL 119
Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
                 + +G+ +L    +   +  DL+TRNI +++    +IGD  L KV+   K    +
Sbjct: 120 LQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKV 176
Query: 720 STVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                S + +  PE     + ++A +V+SFGV+L EL T
Sbjct: 177 KEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 215

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 107/234 (45%), Gaps = 29/234 (12%)
Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYS 661
           F  E+ VL K  + N++  + Y  A   A +  ++    +L+  LH   E   +      
Sbjct: 67  FKNEVGVLRKTRHVNILLFMGYSTAPQLA-IVTQWCEGSSLYHHLHAS-ETKFEMKKLID 124
Query: 662 IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS--L 719
           IA   A+G+ +LH   +  I+  DL + NIFL      +IGD  L    + S+ +GS   
Sbjct: 125 IARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLA--TEKSRWSGSHQF 179
Query: 720 STVAGSVGYIPPEYAYTMR---VTMAGNVYSFGVILLELLTGK---TAVNQGNELAKWVL 773
             ++GS+ ++ PE          +   +VY+FG++L EL+TG+   + +N  +++ + V 
Sbjct: 180 EQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVG 239
Query: 774 RNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVA-CVSVSPEARPKMKSVL 826
           R S   D         +S+    VRS     +K  +A C+    + RP    +L
Sbjct: 240 RGSLSPD---------LSK----VRSNCPKRMKRLMAECLKKKRDERPSFPRIL 280

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 12/204 (5%)
Query: 556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS 615
           +  PL    K +F   Y A           K+ +  ++ + G  H+  +E+E+   L + 
Sbjct: 16  IGRPLG---KGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 72
Query: 616 NVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHG 675
           N++    Y   +   YL  EYAP GT++  L     +  D     +    +A  L++ H 
Sbjct: 73  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCH- 129
Query: 676 FTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY 735
             S  ++  D+   N+ L S  E +I D         S+ T    T+ G++ Y+PPE   
Sbjct: 130 --SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT----TLCGTLDYLPPEMIE 183
Query: 736 TMRVTMAGNVYSFGVILLELLTGK 759
                   +++S GV+  E L GK
Sbjct: 184 GRMHDEKVDLWSLGVLCYEFLVGK 207

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 12/204 (5%)
Query: 556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS 615
           +  PL    K +F   Y A           K+ +  ++ + G  H+  +E+E+   L + 
Sbjct: 11  IGRPLG---KGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 67
Query: 616 NVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHG 675
           N++    Y   +   YL  EYAP GT++  L     +  D     +    +A  L++ H 
Sbjct: 68  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCH- 124
Query: 676 FTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY 735
             S  ++  D+   N+ L S  E +I D         S+ T    T+ G++ Y+PPE   
Sbjct: 125 --SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT----TLCGTLDYLPPEMIE 178
Query: 736 TMRVTMAGNVYSFGVILLELLTGK 759
                   +++S GV+  E L GK
Sbjct: 179 GRMHDEKVDLWSLGVLCYEFLVGK 202

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 12/204 (5%)
Query: 556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS 615
           +  PL    K +F   Y A           K+ +  ++ + G  H+  +E+E+   L + 
Sbjct: 15  IGRPLG---KGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 71
Query: 616 NVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHG 675
           N++    Y   +   YL  EYAP GT++  L     +  D     +    +A  L++ H 
Sbjct: 72  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCH- 128
Query: 676 FTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY 735
             S  ++  D+   N+ L S  E +I D         S+ T    T+ G++ Y+PPE   
Sbjct: 129 --SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT----TLCGTLDYLPPEMIE 182
Query: 736 TMRVTMAGNVYSFGVILLELLTGK 759
                   +++S GV+  E L GK
Sbjct: 183 GRMHDEKVDLWSLGVLCYEFLVGK 206

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 8/161 (4%)
Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYS 661
           F  E+ VL K  + N++  + Y      A +  ++    +L+  LH  +E   +      
Sbjct: 56  FKNEVGVLRKTRHVNILLFMGYSTKPQLA-IVTQWCEGSSLYHHLH-IIETKFEMIKLID 113
Query: 662 IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST 721
           IA   AQG+ +LH   +  I+  DL + NIFL      +IGD  L  V      +     
Sbjct: 114 IARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQ 170
Query: 722 VAGSVGYIPPEYAYTMR---VTMAGNVYSFGVILLELLTGK 759
           ++GS+ ++ PE          +   +VY+FG++L EL+TG+
Sbjct: 171 LSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 211

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 8/161 (4%)
Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYS 661
           F  E+ VL K  + N++  + Y      A +  ++    +L+  LH  +E   +      
Sbjct: 53  FKNEVGVLRKTRHVNILLFMGYSTKPQLA-IVTQWCEGSSLYHHLH-IIETKFEMIKLID 110
Query: 662 IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST 721
           IA   AQG+ +LH   +  I+  DL + NIFL      +IGD  L  V      +     
Sbjct: 111 IARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQ 167
Query: 722 VAGSVGYIPPEYAYTMR---VTMAGNVYSFGVILLELLTGK 759
           ++GS+ ++ PE          +   +VY+FG++L EL+TG+
Sbjct: 168 LSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 208

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 8/161 (4%)
Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYS 661
           F  E+ VL K  + N++  + Y      A +  ++    +L+  LH  +E   +      
Sbjct: 56  FKNEVGVLRKTRHVNILLFMGYSTKPQLA-IVTQWCEGSSLYHHLH-IIETKFEMIKLID 113
Query: 662 IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST 721
           IA   AQG+ +LH   +  I+  DL + NIFL      +IGD  L  V      +     
Sbjct: 114 IARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQ 170
Query: 722 VAGSVGYIPPEYAYTMR---VTMAGNVYSFGVILLELLTGK 759
           ++GS+ ++ PE          +   +VY+FG++L EL+TG+
Sbjct: 171 LSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 211

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 8/161 (4%)
Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYS 661
           F  E+ VL K  + N++  + Y      A +  ++    +L+  LH  +E   +      
Sbjct: 51  FKNEVGVLRKTRHVNILLFMGYSTKPQLA-IVTQWCEGSSLYHHLH-IIETKFEMIKLID 108
Query: 662 IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST 721
           IA   AQG+ +LH   +  I+  DL + NIFL      +IGD  L  V      +     
Sbjct: 109 IARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQ 165
Query: 722 VAGSVGYIPPEYAYTMR---VTMAGNVYSFGVILLELLTGK 759
           ++GS+ ++ PE          +   +VY+FG++L EL+TG+
Sbjct: 166 LSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 206

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 90/173 (52%), Gaps = 18/173 (10%)
Query: 600 HKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENA--LDWA 657
            +F +E+ ++  L++ N++    Y L  +   +  E+ P G L+   H  L+ A  + W+
Sbjct: 68  QEFQREVFIMSNLNHPNIVK--LYGLMHNPPRMVMEFVPCGDLY---HRLLDKAHPIKWS 122
Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC-KVIDPSKST 716
            +  + + +A G+ ++    + PI+  DL + NIFL+SL E    +  +C KV D S S 
Sbjct: 123 VKLRLMLDIALGIEYMQN-QNPPIVHRDLRSPNIFLQSLDE----NAPVCAKVADFSLSQ 177
Query: 717 GSLSTVAGSVG---YIPPEY--AYTMRVTMAGNVYSFGVILLELLTGKTAVNQ 764
            S+ +V+G +G   ++ PE   A     T   + YSF +IL  +LTG+   ++
Sbjct: 178 QSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDE 230

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 9/163 (5%)
Query: 597 GSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDW 656
           G  H+  +E+E+   L + N++    Y   +   YL  EYAP GT++  L     +  D 
Sbjct: 51  GVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDE 108
Query: 657 ASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST 716
               +    +A  L++ H   S  ++  D+   N+ L S  E +I D     V  PS   
Sbjct: 109 QRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWS-VHAPSSRR 164
Query: 717 GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
               T+ G++ Y+PPE           +++S GV+  E L GK
Sbjct: 165 ---DTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 204

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 12/204 (5%)
Query: 556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS 615
           +  PL    K +F   Y A           K+ +  ++ + G  H+  +E+E+   L + 
Sbjct: 15  IGRPLG---KGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 71
Query: 616 NVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHG 675
           N++    Y   +   YL  EYAP GT++  L     +  D     +    +A  L++ H 
Sbjct: 72  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCH- 128
Query: 676 FTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY 735
             S  ++  D+   N+ L S  E +I D     V  PS    +L    G++ Y+PPE   
Sbjct: 129 --SKRVIHRDIKPENLLLGSAGELKIADFGWS-VHAPSSRRAAL---CGTLDYLPPEMIE 182
Query: 736 TMRVTMAGNVYSFGVILLELLTGK 759
                   +++S GV+  E L GK
Sbjct: 183 GRMHDEKVDLWSLGVLCYEFLVGK 206

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 12/204 (5%)
Query: 556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS 615
           +  PL    K +F   Y A           K+ +  ++ + G  H+  +E+E+   L + 
Sbjct: 9   IGRPLG---KGKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 65
Query: 616 NVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHG 675
           N++    Y   +   YL  EYAP GT++  L     +  D     +    +A  L++ H 
Sbjct: 66  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCH- 122
Query: 676 FTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY 735
             S  ++  D+   N+ L S  E +I D         S+ T    T+ G++ Y+PPE   
Sbjct: 123 --SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT----TLCGTLDYLPPEMIE 176
Query: 736 TMRVTMAGNVYSFGVILLELLTGK 759
                   +++S GV+  E L GK
Sbjct: 177 GRMHDEKVDLWSLGVLCYEFLVGK 200

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 106/234 (45%), Gaps = 29/234 (12%)
Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYS 661
           F  E+ VL K  + N++  + Y      A +  ++    +L+  LH   E   +      
Sbjct: 67  FKNEVGVLRKTRHVNILLFMGYSTKPQLA-IVTQWCEGSSLYHHLHAS-ETKFEMKKLID 124
Query: 662 IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS--L 719
           IA   A+G+ +LH   +  I+  DL + NIFL      +IGD  L    + S+ +GS   
Sbjct: 125 IARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLA--TEKSRWSGSHQF 179
Query: 720 STVAGSVGYIPPEYAYTMR---VTMAGNVYSFGVILLELLTGK---TAVNQGNELAKWVL 773
             ++GS+ ++ PE          +   +VY+FG++L EL+TG+   + +N  +++ + V 
Sbjct: 180 EQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVG 239
Query: 774 RNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVA-CVSVSPEARPKMKSVL 826
           R S   D         +S+    VRS     +K  +A C+    + RP    +L
Sbjct: 240 RGSLSPD---------LSK----VRSNCPKRMKRLMAECLKKKRDERPSFPRIL 280

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 12/204 (5%)
Query: 556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS 615
           +  PL    K +F   Y A           K+ +  ++ + G  H+  +E+E+   L + 
Sbjct: 12  IGRPLG---KGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 616 NVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHG 675
           N++    Y   +   YL  EYAP GT++  L     +  D     +    +A  L++ H 
Sbjct: 69  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCH- 125
Query: 676 FTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY 735
             S  ++  D+   N+ L S  E +I D     V  PS    +L    G++ Y+PPE   
Sbjct: 126 --SKRVIHRDIKPENLLLGSAGELKIADFGW-SVHAPSSRRAAL---CGTLDYLPPEMIE 179
Query: 736 TMRVTMAGNVYSFGVILLELLTGK 759
                   +++S GV+  E L GK
Sbjct: 180 GRMHDEKVDLWSLGVLCYEFLVGK 203

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 82/195 (42%), Gaps = 9/195 (4%)
Query: 565 KTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYV 624
           K +F   Y A           K+ +  ++ + G  H+  +E+E+   L + N++    Y 
Sbjct: 44  KGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF 103
Query: 625 LASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLL 684
             +   YL  EYAP GT++  L     +  D     +    +A  L++ H   S  ++  
Sbjct: 104 HDATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCH---SKRVIHR 158
Query: 685 DLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGN 744
           D+   N+ L S  E +I D     V  PS     L    G++ Y+PPE           +
Sbjct: 159 DIKPENLLLGSAGELKIADFGWS-VHAPSSRRDDL---CGTLDYLPPEMIEGRMHDEKVD 214
Query: 745 VYSFGVILLELLTGK 759
           ++S GV+  E L GK
Sbjct: 215 LWSLGVLCYEFLVGK 229

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 89/173 (51%), Gaps = 18/173 (10%)
Query: 600 HKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENA--LDWA 657
            +F +E+ ++  L++ N++    Y L  +   +  E+ P G L+   H  L+ A  + W+
Sbjct: 68  QEFQREVFIMSNLNHPNIVK--LYGLMHNPPRMVMEFVPCGDLY---HRLLDKAHPIKWS 122
Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC-KVIDPSKST 716
            +  + + +A G+ ++    + PI+  DL + NIFL+SL E    +  +C KV D   S 
Sbjct: 123 VKLRLMLDIALGIEYMQN-QNPPIVHRDLRSPNIFLQSLDE----NAPVCAKVADFGTSQ 177
Query: 717 GSLSTVAGSVG---YIPPEY--AYTMRVTMAGNVYSFGVILLELLTGKTAVNQ 764
            S+ +V+G +G   ++ PE   A     T   + YSF +IL  +LTG+   ++
Sbjct: 178 QSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDE 230

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 11/185 (5%)
Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYS 661
           F  E+ VL K  + N++  + Y +  D+  +  ++    +L+  LH   E          
Sbjct: 79  FRNEVAVLRKTRHVNILLFMGY-MTKDNLAIVTQWCEGSSLYKHLH-VQETKFQMFQLID 136
Query: 662 IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST 721
           IA   AQG+ +LH   +  I+  D+ + NIFL      +IGD  L  V      +  +  
Sbjct: 137 IARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQ 193
Query: 722 VAGSVGYIPPEYAYTMR---VTMAGNVYSFGVILLELLTGK---TAVNQGNELAKWVLRN 775
             GSV ++ PE          +   +VYS+G++L EL+TG+   + +N  +++   V R 
Sbjct: 194 PTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRG 253
Query: 776 SAQQD 780
            A  D
Sbjct: 254 YASPD 258

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 12/163 (7%)
Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYS 661
           F  E+ VL K  + N++  + Y      A +  ++    +L+  LH  +E   +      
Sbjct: 79  FKNEVGVLRKTRHVNILLFMGYSTKPQLA-IVTQWCEGSSLYHHLH-IIETKFEMIKLID 136
Query: 662 IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS--L 719
           IA   AQG+ +LH   +  I+  DL + NIFL      +IGD  L    + S+ +GS   
Sbjct: 137 IARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLA--TEKSRWSGSHQF 191
Query: 720 STVAGSVGYIPPEYAYTMR---VTMAGNVYSFGVILLELLTGK 759
             ++GS+ ++ PE          +   +VY+FG++L EL+TG+
Sbjct: 192 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 234

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 12/204 (5%)
Query: 556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS 615
           +  PL    K +F   Y A           K+ +  ++ + G  H+  +E+E+   L + 
Sbjct: 12  IGRPLG---KGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 616 NVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHG 675
           N++    Y   +   YL  EYAP GT++  L     +  D     +    +A  L++ H 
Sbjct: 69  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCH- 125
Query: 676 FTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY 735
             S  ++  D+   N+ L S  E +I D         S+ T     + G++ Y+PPE   
Sbjct: 126 --SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT----ELCGTLDYLPPEMIE 179
Query: 736 TMRVTMAGNVYSFGVILLELLTGK 759
                   +++S GV+  E L GK
Sbjct: 180 GRMHDEKVDLWSLGVLCYEFLVGK 203

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 12/163 (7%)
Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYS 661
           F  E+ VL K  + N++  + Y      A +  ++    +L+  LH  +E   +      
Sbjct: 71  FKNEVGVLRKTRHVNILLFMGYSTKPQLA-IVTQWCEGSSLYHHLH-IIETKFEMIKLID 128
Query: 662 IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS--L 719
           IA   AQG+ +LH   +  I+  DL + NIFL      +IGD  L    + S+ +GS   
Sbjct: 129 IARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLA--TEKSRWSGSHQF 183
Query: 720 STVAGSVGYIPPEYAYTMR---VTMAGNVYSFGVILLELLTGK 759
             ++GS+ ++ PE          +   +VY+FG++L EL+TG+
Sbjct: 184 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 226

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 9/163 (5%)
Query: 597 GSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDW 656
           G  H+  +E+E+   L + N++    Y   +   YL  EYAP+G ++  L     +  D 
Sbjct: 55  GVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQKL--SKFDE 112
Query: 657 ASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST 716
               +    +A  L++ H   S  ++  D+   N+ L S  E +I D     V  PS   
Sbjct: 113 QRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWS-VHAPSSRR 168
Query: 717 GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
             L    G++ Y+PPE           +++S GV+  E L GK
Sbjct: 169 XXL---XGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 208

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 9/163 (5%)
Query: 597 GSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDW 656
           G  H+  +E+E+   L + N++    Y   +   YL  EYAP GT++  L     +  D 
Sbjct: 52  GVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDE 109
Query: 657 ASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST 716
               +    +A  L++ H   S  ++  D+   N+ L S  E +I +         S+ T
Sbjct: 110 QRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIANFGWSVHAPSSRRT 166
Query: 717 GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
               T+ G++ Y+PPE           +++S GV+  E L GK
Sbjct: 167 ----TLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 205

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 9/163 (5%)
Query: 597 GSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDW 656
           G  H+  +E+E+   L + N++    Y   +   YL  EYAP GT++  L     +  D 
Sbjct: 51  GVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDE 108
Query: 657 ASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST 716
               +    +A  L++ H   S  ++  D+   N+ L S  E +I D     V  PS   
Sbjct: 109 QRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWS-VHAPSSRR 164
Query: 717 GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
             L    G++ Y+PPE           +++S GV+  E L GK
Sbjct: 165 TDL---CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 204

>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 597 GSHHKFD--KELEVLGKLSNSNVMTPLAYVLASDSA---YLFYEYAPKGTLFDVLHGCLE 651
           G +H  D  KE+E+L  L + N++     +   D      L  E+ P G+L + L    +
Sbjct: 51  GGNHIADLKKEIEILRNLYHENIVK-YKGICTEDGGNGIKLIMEFLPSGSLKEYLPK-NK 108
Query: 652 NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
           N ++   +   AV + +G+ +L    S   +  DL+ RN+ ++S  + +IGD  L K I+
Sbjct: 109 NKINLKQQLKYAVQICKGMDYL---GSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIE 165
Query: 712 PSKSTGSLSTVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
             K   ++     S V +  PE     +  +A +V+SFGV L ELLT
Sbjct: 166 TDKEXXTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLT 212

>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 597 GSHHKFD--KELEVLGKLSNSNVMTPLAYVLASDSA---YLFYEYAPKGTLFDVLHGCLE 651
           G +H  D  KE+E+L  L + N++     +   D      L  E+ P G+L + L    +
Sbjct: 63  GGNHIADLKKEIEILRNLYHENIVK-YKGICTEDGGNGIKLIMEFLPSGSLKEYLPK-NK 120
Query: 652 NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
           N ++   +   AV + +G+ +L    S   +  DL+ RN+ ++S  + +IGD  L K I+
Sbjct: 121 NKINLKQQLKYAVQICKGMDYL---GSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIE 177
Query: 712 PSKSTGSLSTVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
             K   ++     S V +  PE     +  +A +V+SFGV L ELLT
Sbjct: 178 TDKEXXTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLT 224

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 9/163 (5%)
Query: 597 GSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDW 656
           G  H+  +E+E+   L + N++    Y   +   YL  EYAP GT++  L     +  D 
Sbjct: 52  GVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDE 109
Query: 657 ASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST 716
               +    +A  L++ H   S  ++  D+   N+ L S  E +I D     V  PS   
Sbjct: 110 QRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWS-VHAPSSRR 165
Query: 717 GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
             L    G++ Y+PPE           +++S GV+  E L GK
Sbjct: 166 XXL---CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 205

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 9/163 (5%)
Query: 597 GSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDW 656
           G  H+  +E+E+   L + N++    Y   +   YL  EYAP GT++  L     +  D 
Sbjct: 55  GVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDE 112
Query: 657 ASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST 716
               +    +A  L++ H   S  ++  D+   N+ L S  E +I D         S+ T
Sbjct: 113 QRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT 169
Query: 717 GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
                + G++ Y+PPE           +++S GV+  E L GK
Sbjct: 170 ----DLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 208

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 12/163 (7%)
Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYS 661
           F  E+ VL K  + N++  + Y      A +  ++    +L+  LH  +E   +      
Sbjct: 51  FKNEVGVLRKTRHVNILLFMGYSTKPQLA-IVTQWCEGSSLYHHLH-IIETKFEMIKLID 108
Query: 662 IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS--L 719
           IA   AQG+ +LH   +  I+  DL + NIFL      +IGD  L    + S+ +GS   
Sbjct: 109 IARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLA--TEKSRWSGSHQF 163
Query: 720 STVAGSVGYIPPEYAYTMR---VTMAGNVYSFGVILLELLTGK 759
             ++GS+ ++ PE          +   +VY+FG++L EL+TG+
Sbjct: 164 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 206

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 9/195 (4%)
Query: 565 KTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYV 624
           K +F   Y A           K+ +  ++ + G  H+  +E+E+   L + N++    Y 
Sbjct: 18  KGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF 77
Query: 625 LASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLL 684
             +   YL  EYAP GT++  L     +  D     +    +A  L++ H   S  ++  
Sbjct: 78  HDATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCH---SKRVIHR 132
Query: 685 DLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGN 744
           D+   N+ L S  E +I D         S+ T     + G++ Y+PPE           +
Sbjct: 133 DIKPENLLLGSAGELKIADFGWSVHAPSSRRTD----LCGTLDYLPPEMIEGRMHDEKVD 188
Query: 745 VYSFGVILLELLTGK 759
           ++S GV+  E L GK
Sbjct: 189 LWSLGVLCYEFLVGK 203

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 89/173 (51%), Gaps = 18/173 (10%)
Query: 600 HKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENA--LDWA 657
            +F +E+ ++  L++ N++    Y L  +   +  E+ P G L+   H  L+ A  + W+
Sbjct: 68  QEFQREVFIMSNLNHPNIVK--LYGLMHNPPRMVMEFVPCGDLY---HRLLDKAHPIKWS 122
Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC-KVIDPSKST 716
            +  + + +A G+ ++    + PI+  DL + NIFL+SL E    +  +C KV D   S 
Sbjct: 123 VKLRLMLDIALGIEYMQN-QNPPIVHRDLRSPNIFLQSLDE----NAPVCAKVADFGLSQ 177
Query: 717 GSLSTVAGSVG---YIPPEY--AYTMRVTMAGNVYSFGVILLELLTGKTAVNQ 764
            S+ +V+G +G   ++ PE   A     T   + YSF +IL  +LTG+   ++
Sbjct: 178 QSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDE 230

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 12/204 (5%)
Query: 556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS 615
           +  PL    K +F   Y A           K+ +  ++ + G  H+  +E+E+   L + 
Sbjct: 15  IGRPLG---KGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 71
Query: 616 NVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHG 675
           N++    Y   +   YL  EYAP GT++  L     +  D     +    +A  L++ H 
Sbjct: 72  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCH- 128
Query: 676 FTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY 735
             S  ++  D+   N+ L S  E +I +         S+ T    T+ G++ Y+PPE   
Sbjct: 129 --SKRVIHRDIKPENLLLGSAGELKIANFGWSVHAPSSRRT----TLCGTLDYLPPEMIE 182
Query: 736 TMRVTMAGNVYSFGVILLELLTGK 759
                   +++S GV+  E L GK
Sbjct: 183 GRMHDEKVDLWSLGVLCYEFLVGK 206

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 110/262 (41%), Gaps = 27/262 (10%)
Query: 570 TYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD 628
           T Y A+ + +G    I+++N    + Q         E+ V+ +  N N++  L   L  D
Sbjct: 35  TVYTAMDVATGQEVAIRQMN----LQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGD 90
Query: 629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLST 688
             ++  EY   G+L DV+    E  +D     ++     Q L FLH   SN ++  D+ +
Sbjct: 91  ELWVVMEYLAGGSLTDVV---TETCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKS 144
Query: 689 RNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSF 748
            NI L      ++ D   C  I P +S    ST+ G+  ++ PE           +++S 
Sbjct: 145 DNILLGMDGSVKLTDFGFCAQITPEQS--KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSL 202
Query: 749 GVILLELLTGK--------------TAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS 794
           G++ +E++ G+               A N   EL      ++  +D L+  LD +V +  
Sbjct: 203 GIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRG 262
Query: 795 LAVRSQMLTVLKVAVACVSVSP 816
            A        LK+A    S++P
Sbjct: 263 SAKELLQHQFLKIAKPLSSLTP 284

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 12/204 (5%)
Query: 556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS 615
           +  PL    K +F   Y A           K+ +  ++ + G  H+  +E+E+   L + 
Sbjct: 12  IGRPLG---KGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 616 NVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHG 675
           N++    Y   +   YL  EYAP GT++  L     +  D     +    +A  L++ H 
Sbjct: 69  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCH- 125
Query: 676 FTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY 735
             S  ++  D+   N+ L S  E +I D         S+ T     + G++ Y+PPE   
Sbjct: 126 --SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT----XLCGTLDYLPPEMIE 179
Query: 736 TMRVTMAGNVYSFGVILLELLTGK 759
                   +++S GV+  E L GK
Sbjct: 180 GRMHDEKVDLWSLGVLCYEFLVGK 203

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 85/204 (41%), Gaps = 12/204 (5%)
Query: 556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS 615
           +  PL    K +F   Y A           K+ +  ++ + G  H+  +E+E+   L + 
Sbjct: 15  IGRPLG---KGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 71
Query: 616 NVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHG 675
           N++    Y   +   YL  EYAP GT++  L     +  D     +    +A  L++ H 
Sbjct: 72  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCH- 128
Query: 676 FTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY 735
             S  ++  D+   N+ L S  E +I D     V  PS     L    G++ Y+PPE   
Sbjct: 129 --SKRVIHRDIKPENLLLGSAGELKIADFGW-SVHAPSSRRDDL---CGTLDYLPPEMIE 182
Query: 736 TMRVTMAGNVYSFGVILLELLTGK 759
                   +++S GV+  E L GK
Sbjct: 183 GRMHDEKVDLWSLGVLCYEFLVGK 206

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 85/204 (41%), Gaps = 12/204 (5%)
Query: 556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS 615
           +  PL    K +F   Y A           K+ +  ++ + G  H+  +E+E+   L + 
Sbjct: 12  IGRPLG---KGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 616 NVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHG 675
           N++    Y   +   YL  EYAP GT++  L     +  D     +    +A  L++ H 
Sbjct: 69  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCH- 125
Query: 676 FTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY 735
             S  ++  D+   N+ L S  E +I D     V  PS     L    G++ Y+PPE   
Sbjct: 126 --SKRVIHRDIKPENLLLGSAGELKIADFGW-SVHAPSSRRTDL---CGTLDYLPPEMIE 179
Query: 736 TMRVTMAGNVYSFGVILLELLTGK 759
                   +++S GV+  E L GK
Sbjct: 180 GRMHDEKVDLWSLGVLCYEFLVGK 203

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 85/204 (41%), Gaps = 12/204 (5%)
Query: 556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS 615
           +  PL    K +F   Y A           K+ +  ++ + G  H+  +E+E+   L + 
Sbjct: 12  IGRPLG---KGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 616 NVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHG 675
           N++    Y   +   YL  EYAP GT++  L     +  D     +    +A  L++ H 
Sbjct: 69  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCH- 125
Query: 676 FTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY 735
             S  ++  D+   N+ L S  E +I D     V  PS     L    G++ Y+PPE   
Sbjct: 126 --SKRVIHRDIKPENLLLGSAGELKIADFGW-SVHAPSSRRXXL---CGTLDYLPPEMIE 179
Query: 736 TMRVTMAGNVYSFGVILLELLTGK 759
                   +++S GV+  E L GK
Sbjct: 180 GRMHDEKVDLWSLGVLCYEFLVGK 203

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 85/204 (41%), Gaps = 12/204 (5%)
Query: 556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS 615
           +  PL    K +F   Y A           K+ +  ++ + G  H+  +E+E+   L + 
Sbjct: 15  IGRPLG---KGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 71
Query: 616 NVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHG 675
           N++    Y   +   YL  EYAP GT++  L     +  D     +    +A  L++ H 
Sbjct: 72  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCH- 128
Query: 676 FTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY 735
             S  ++  D+   N+ L S  E +I D     V  PS     L    G++ Y+PPE   
Sbjct: 129 --SKRVIHRDIKPENLLLGSAGELKIADFGW-SVHAPSSRRXXL---CGTLDYLPPEMIE 182
Query: 736 TMRVTMAGNVYSFGVILLELLTGK 759
                   +++S GV+  E L GK
Sbjct: 183 GRMHDEKVDLWSLGVLCYEFLVGK 206

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 5/160 (3%)
Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E +++ KL +  ++  L  V++ +  Y+  EY  KG+L D L      AL   
Sbjct: 47  SPESFLEEAQIMKKLKHDKLVQ-LYAVVSEEPIYIVTEYMNKGSLLDFLKDGEGRALKLP 105
Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
           +   +A  VA G+A++        +  DL + NI + +    +I D  L ++I+ ++ T 
Sbjct: 106 NLVDMAAQVAAGMAYIERMN---YIHRDLRSANILVGNGLICKIADFGLARLIEDNEXTA 162
Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   + +  PE A   R T+  +V+SFG++L EL+T
Sbjct: 163 R-QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVT 201

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 12/203 (5%)
Query: 556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS 615
           +  PL    K +F   Y A           K+ +  ++ + G  H+  +E+E+   L + 
Sbjct: 16  IGRPLG---KGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRHP 72
Query: 616 NVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHG 675
           N++    Y   +   YL  EYAP GT++  L     +  D     +    +A  L++ H 
Sbjct: 73  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SRFDEQRTATYITELANALSYCH- 129
Query: 676 FTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY 735
             S  ++  D+   N+ L S  E +I D         S+ T    T+ G++ Y+PPE   
Sbjct: 130 --SKRVIHRDIKPENLLLGSNGELKIADFGWSVHAPSSRRT----TLCGTLDYLPPEMIE 183
Query: 736 TMRVTMAGNVYSFGVILLELLTG 758
                   +++S GV+  E L G
Sbjct: 184 GRMHDEKVDLWSLGVLCYEFLVG 206

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 5/160 (3%)
Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E +V+ KL +  ++  L  V++ +  Y+  EY  KG+L D L G +   L   
Sbjct: 45  SPEAFLQEAQVMKKLRHEKLVQ-LYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLP 103
Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
               +A  +A G+A++        +  DL   NI +      ++ D  L ++I+ ++ T 
Sbjct: 104 QLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA 160
Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   + +  PE A   R T+  +V+SFG++L EL T
Sbjct: 161 R-QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT 199

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 5/160 (3%)
Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E +V+ KL +  ++  L  V++ +  Y+  EY  KG+L D L G +   L   
Sbjct: 47  SPEAFLQEAQVMKKLRHEKLVQ-LYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLP 105
Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
               +A  +A G+A++        +  DL   NI +      ++ D  L ++I+ ++ T 
Sbjct: 106 QLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA 162
Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   + +  PE A   R T+  +V+SFG++L EL T
Sbjct: 163 R-QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT 201

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 5/160 (3%)
Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E +V+ KL +  ++  L  V++ +  Y+  EY  KG+L D L G +   L   
Sbjct: 56  SPEAFLQEAQVMKKLRHEKLVQ-LYAVVSEEPIYIVIEYMSKGSLLDFLKGEMGKYLRLP 114
Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
               +A  +A G+A++        +  DL   NI +      ++ D  L ++I+ ++ T 
Sbjct: 115 QLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEXTA 171
Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   + +  PE A   R T+  +V+SFG++L EL T
Sbjct: 172 R-QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT 210

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 5/160 (3%)
Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E +V+ KL +  ++  L  V++ +  Y+  EY  KG+L D L G +   L   
Sbjct: 56  SPEAFLQEAQVMKKLRHEKLVQ-LYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLP 114
Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
               +A  +A G+A++        +  DL+  NI +      ++ D  L ++I+ ++ T 
Sbjct: 115 QLVDMAAQIASGMAYVERMN---YVHRDLAAANILVGENLVCKVADFGLARLIEDNEYTA 171
Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   + +  PE A   R T+  +V+SFG++L EL T
Sbjct: 172 R-QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT 210

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/203 (24%), Positives = 85/203 (41%), Gaps = 12/203 (5%)
Query: 556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS 615
           +  PL    K +F   Y A           K+ +  ++ + G  H+  +E+E+   L + 
Sbjct: 16  IGRPLG---KGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRHP 72
Query: 616 NVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHG 675
           N++    Y   +   YL  EYAP GT++  L     +  D     +    +A  L++ H 
Sbjct: 73  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SRFDEQRTATYITELANALSYCH- 129
Query: 676 FTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY 735
             S  ++  D+   N+ L S  E +I D     V  PS       T+ G++ Y+PPE   
Sbjct: 130 --SKRVIHRDIKPENLLLGSNGELKIADFGW-SVHAPSSRR---DTLCGTLDYLPPEMIE 183
Query: 736 TMRVTMAGNVYSFGVILLELLTG 758
                   +++S GV+  E L G
Sbjct: 184 GRMHDEKVDLWSLGVLCYEFLVG 206

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 5/160 (3%)
Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E +V+ KL +  ++  L  V++ +  Y+  EY  KG+L D L G +   L   
Sbjct: 56  SPEAFLQEAQVMKKLRHEKLVQ-LYAVVSEEPIYIVIEYMSKGSLLDFLKGEMGKYLRLP 114
Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
               +A  +A G+A++        +  DL   NI +      ++ D  L ++I+ ++ T 
Sbjct: 115 QLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA 171
Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   + +  PE A   R T+  +V+SFG++L EL T
Sbjct: 172 R-QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT 210

>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680 Length = 292

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 82/196 (41%), Gaps = 13/196 (6%)
Query: 565 KTRFSTYYKAVMPSGMSYFIKKLN--WSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLA 622
           K +F   Y A      S+FI  L   +  +I + G  H+  +E+E+   L + N++    
Sbjct: 33  KGKFGNVYLAR--EKKSHFIVALKVLFKSQIEKEGVEHQLRREIEIQAHLHHPNILRLYN 90
Query: 623 YVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPIL 682
           Y       YL  EYAP+G L+  L        D     +I   +A  L + HG     ++
Sbjct: 91  YFYDRRRIYLILEYAPRGELYKELQKSC--TFDEQRTATIMEELADALMYCHG---KKVI 145
Query: 683 LLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMA 742
             D+   N+ L    E +I D     V  PS       T+ G++ Y+PPE          
Sbjct: 146 HRDIKPENLLLGLKGELKIADFGW-SVHAPSLRR---KTMCGTLDYLPPEMIEGRMHNEK 201
Query: 743 GNVYSFGVILLELLTG 758
            +++  GV+  ELL G
Sbjct: 202 VDLWCIGVLCYELLVG 217

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 109/262 (41%), Gaps = 27/262 (10%)
Query: 570 TYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD 628
           T Y A+ + +G    I+++N    + Q         E+ V+ +  N N++  L   L  D
Sbjct: 35  TVYTAMDVATGQEVAIRQMN----LQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGD 90
Query: 629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLST 688
             ++  EY   G+L DV+    E  +D     ++     Q L FLH   SN ++  D+ +
Sbjct: 91  ELWVVMEYLAGGSLTDVV---TETCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKS 144
Query: 689 RNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSF 748
            NI L      ++ D   C  I P +S    S + G+  ++ PE           +++S 
Sbjct: 145 DNILLGMDGSVKLTDFGFCAQITPEQS--KRSEMVGTPYWMAPEVVTRKAYGPKVDIWSL 202
Query: 749 GVILLELLTGK--------------TAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS 794
           G++ +E++ G+               A N   EL      ++  +D L+  LD +V +  
Sbjct: 203 GIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRG 262
Query: 795 LAVRSQMLTVLKVAVACVSVSP 816
            A        LK+A    S++P
Sbjct: 263 SAKELLQHQFLKIAKPLSSLTP 284

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 5/160 (3%)
Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E +V+ KL +  ++  L  V++ +  Y+  EY  KG+L D L G +   L   
Sbjct: 56  SPEAFLQEAQVMKKLRHEKLVQ-LYAVVSEEPIYIVCEYMSKGSLLDFLKGEMGKYLRLP 114
Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
               +A  +A G+A++        +  DL   NI +      ++ D  L ++I+ ++ T 
Sbjct: 115 QLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA 171
Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   + +  PE A   R T+  +V+SFG++L EL T
Sbjct: 172 R-QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT 210

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 5/160 (3%)
Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E +V+ KL +  ++  L  V++ +  Y+  EY  KG+L D L G +   L   
Sbjct: 56  SPEAFLQEAQVMKKLRHEKLVQ-LYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLP 114
Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
               +A  +A G+A++        +  DL   NI +      ++ D  L ++I+ ++ T 
Sbjct: 115 QLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA 171
Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   + +  PE A   R T+  +V+SFG++L EL T
Sbjct: 172 R-QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT 210

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 5/160 (3%)
Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E +V+ KL +  ++  L  V++ +  Y+  EY  KG L D L G +   L   
Sbjct: 56  SPEAFLQEAQVMKKLRHEKLVQ-LYAVVSEEPIYIVMEYMSKGCLLDFLKGEMGKYLRLP 114
Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
               +A  +A G+A++        +  DL   NI +      ++ D  L ++I+ ++ T 
Sbjct: 115 QLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA 171
Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   + +  PE A   R T+  +V+SFG++L EL T
Sbjct: 172 R-QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT 210

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 5/160 (3%)
Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E +V+ KL +  ++  L  V++ +  Y+  EY  KG L D L G +   L   
Sbjct: 56  SPEAFLQEAQVMKKLRHEKLVQ-LYAVVSEEPIYIVTEYMSKGCLLDFLKGEMGKYLRLP 114
Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
               +A  +A G+A++        +  DL   NI +      ++ D  L ++I+ ++ T 
Sbjct: 115 QLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA 171
Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   + +  PE A   R T+  +V+SFG++L EL T
Sbjct: 172 R-QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT 210

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 5/160 (3%)
Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E +V+ K+ +  ++  L  V++ +  Y+  EY  KG+L D L G +   L   
Sbjct: 56  SPEAFLQEAQVMKKIRHEKLVQ-LYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLP 114
Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
               +A  +A G+A++        +  DL   NI +      ++ D  L ++I+ ++ T 
Sbjct: 115 QLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA 171
Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   + +  PE A   R T+  +V+SFG++L EL T
Sbjct: 172 R-QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT 210

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 5/160 (3%)
Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E +V+ KL +  ++  L  V++ +  Y+  EY  KG+L D L G +   L   
Sbjct: 223 SPEAFLQEAQVMKKLRHEKLVQ-LYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLP 281
Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
               +A  +A G+A++        +  DL   NI +      ++ D  L ++I+ ++ T 
Sbjct: 282 QLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLGRLIEDNEYTA 338
Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   + +  PE A   R T+  +V+SFG++L EL T
Sbjct: 339 R-QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT 377

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 5/160 (3%)
Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E +V+ KL +  ++  L  V++ +  Y+  EY  KG+L D L G     L   
Sbjct: 305 SPEAFLQEAQVMKKLRHEKLVQ-LYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLP 363
Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
               +A  +A G+A++        +  DL   NI +      ++ D  L ++I+ ++ T 
Sbjct: 364 QLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYT- 419
Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
           +       + +  PE A   R T+  +V+SFG++L EL T
Sbjct: 420 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT 459

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 5/160 (3%)
Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E +V+ KL +  ++   A V++ +  Y+  EY  KG+L D L G     L   
Sbjct: 222 SPEAFLQEAQVMKKLRHEKLVQLYA-VVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLP 280
Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
               +A  +A G+A++        +  DL   NI +      ++ D  L ++I+ ++ T 
Sbjct: 281 QLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA 337
Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   + +  PE A   R T+  +V+SFG++L EL T
Sbjct: 338 R-QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT 376

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 5/160 (3%)
Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E +V+ KL +  ++  L  V++ +  Y+  EY  KG+L D L G     L   
Sbjct: 49  SPEAFLQEAQVMKKLRHEKLVQ-LYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLP 107
Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
               +A  +A G+A++        +  DL   NI +      ++ D  L ++I+ ++ T 
Sbjct: 108 QLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA 164
Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   + +  PE A   R T+  +V+SFG++L EL T
Sbjct: 165 R-QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT 203

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 5/160 (3%)
Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E +V+ KL +  ++   A V++ +  Y+  EY  KG+L D L G     L   
Sbjct: 222 SPEAFLQEAQVMKKLRHEKLVQLYA-VVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLP 280
Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
               +A  +A G+A++        +  DL   NI +      ++ D  L ++I+ ++ T 
Sbjct: 281 QLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA 337
Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   + +  PE A   R T+  +V+SFG++L EL T
Sbjct: 338 R-QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT 376

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 109/262 (41%), Gaps = 27/262 (10%)
Query: 570 TYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD 628
           T Y A+ + +G    I+++N    + Q         E+ V+ +  N N++  L   L  D
Sbjct: 36  TVYTAMDVATGQEVAIRQMN----LQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGD 91
Query: 629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLST 688
             ++  EY   G+L DV+    E  +D     ++     Q L FLH   SN ++  D+ +
Sbjct: 92  ELWVVMEYLAGGSLTDVV---TETCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKS 145
Query: 689 RNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSF 748
            NI L      ++ D   C  I P +S    S + G+  ++ PE           +++S 
Sbjct: 146 DNILLGMDGSVKLTDFGFCAQITPEQS--KRSXMVGTPYWMAPEVVTRKAYGPKVDIWSL 203
Query: 749 GVILLELLTGK--------------TAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS 794
           G++ +E++ G+               A N   EL      ++  +D L+  L+ +V +  
Sbjct: 204 GIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRG 263
Query: 795 LAVRSQMLTVLKVAVACVSVSP 816
            A        LK+A    S++P
Sbjct: 264 SAKELIQHQFLKIAKPLSSLTP 285

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 109/262 (41%), Gaps = 27/262 (10%)
Query: 570 TYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD 628
           T Y A+ + +G    I+++N    + Q         E+ V+ +  N N++  L   L  D
Sbjct: 35  TVYTAMDVATGQEVAIRQMN----LQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGD 90
Query: 629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLST 688
             ++  EY   G+L DV+    E  +D     ++     Q L FLH   SN ++  D+ +
Sbjct: 91  ELWVVMEYLAGGSLTDVV---TETCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKS 144
Query: 689 RNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSF 748
            NI L      ++ D   C  I P +S    S + G+  ++ PE           +++S 
Sbjct: 145 DNILLGMDGSVKLTDFGFCAQITPEQS--KRSXMVGTPYWMAPEVVTRKAYGPKVDIWSL 202
Query: 749 GVILLELLTGK--------------TAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS 794
           G++ +E++ G+               A N   EL      ++  +D L+  L+ +V +  
Sbjct: 203 GIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRG 262
Query: 795 LAVRSQMLTVLKVAVACVSVSP 816
            A        LK+A    S++P
Sbjct: 263 SAKELLQHQFLKIAKPLSSLTP 284

>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 110/262 (41%), Gaps = 27/262 (10%)
Query: 570 TYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD 628
           T Y A+ + +G    I+++N    + Q         E+ V+ +  N N++  L   L  D
Sbjct: 36  TVYTAMDVATGQEVAIRQMN----LQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGD 91
Query: 629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLST 688
             ++  EY   G+L DV+    E  +D     ++     Q L FLH   SN ++  ++ +
Sbjct: 92  ELWVVMEYLAGGSLTDVV---TETCMDEGQIAAVCRECLQALEFLH---SNQVIHRNIKS 145
Query: 689 RNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSF 748
            NI L      ++ D   C  I P +S    ST+ G+  ++ PE           +++S 
Sbjct: 146 DNILLGMDGSVKLTDFGFCAQITPEQS--KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSL 203
Query: 749 GVILLELLTGK--------------TAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS 794
           G++ +E++ G+               A N   EL      ++  +D L+  L+ +V +  
Sbjct: 204 GIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRG 263
Query: 795 LAVRSQMLTVLKVAVACVSVSP 816
            A        LK+A    S++P
Sbjct: 264 SAKELIQHQFLKIAKPLSSLTP 285

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 5/160 (3%)
Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E +V+ KL +  ++   A V++ +  Y+  EY  KG+L D L G     L   
Sbjct: 222 SPEAFLQEAQVMKKLRHEKLVQLYA-VVSEEPIYIVGEYMSKGSLLDFLKGETGKYLRLP 280
Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
               +A  +A G+A++        +  DL   NI +      ++ D  L ++I+ ++ T 
Sbjct: 281 QLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA 337
Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   + +  PE A   R T+  +V+SFG++L EL T
Sbjct: 338 R-QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT 376

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 14/167 (8%)
Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL--HGCL--ENALDW 656
           +F++E+    +LS+ N+++ +      D  YL  EY    TL + +  HG L  + A+++
Sbjct: 57  RFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSVDTAINF 116
Query: 657 ASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST 716
            ++    +  A  +  +H          D+  +NI + S K  +I D  + K +  +  T
Sbjct: 117 TNQILDGIKHAHDMRIVHR---------DIKPQNILIDSNKTLKIFDFGIAKALSETSLT 167
Query: 717 GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVN 763
            + + V G+V Y  PE A         ++YS G++L E+L G+   N
Sbjct: 168 QT-NHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFN 213

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 9/157 (5%)
Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASRY 660
           F  E  V+ +L +SN++  L  ++      Y+  EY  KG+L D L     + L      
Sbjct: 46  FLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLL 105
Query: 661 SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLS 720
             ++ V + + +L G   N  +  DL+ RN+ +      ++ D  L K    ++ TG L 
Sbjct: 106 KFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKL- 161
Query: 721 TVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                V +  PE     + +   +V+SFG++L E+ +
Sbjct: 162 ----PVKWTAPEALREKKFSTKSDVWSFGILLWEIYS 194

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 5/160 (3%)
Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E +V+ KL +  ++  L  V++ +  Y+  EY  KG+L D L G     L   
Sbjct: 53  SPEAFLQEAQVMKKLRHEKLVQ-LYAVVSEEPIYIVTEYMNKGSLLDFLKGETGKYLRLP 111
Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
               ++  +A G+A++        +  DL   NI +      ++ D  L ++I+ ++ T 
Sbjct: 112 QLVDMSAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEWTA 168
Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   + +  PE A   R T+  +V+SFG++L EL T
Sbjct: 169 R-QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT 207

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 5/160 (3%)
Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E +V+ KL +  ++  L  V++ +  Y+  EY  KG+L D L G     L   
Sbjct: 53  SPEAFLQEAQVMKKLRHEKLVQ-LYAVVSEEPIYIVTEYMNKGSLLDFLKGETGKYLRLP 111
Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
               ++  +A G+A++        +  DL   NI +      ++ D  L ++I+ ++ T 
Sbjct: 112 QLVDMSAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA 168
Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   + +  PE A   R T+  +V+SFG++L EL T
Sbjct: 169 R-QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT 207

>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And Unphosphorylated Kinase Domains Of The Cdc42-Associated Tyrosine Kinase Ack1 Bound To Amp-Pcp Length = 291

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 111/262 (42%), Gaps = 25/262 (9%)
Query: 577 PSG--MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY 634
           PSG  +S  +K L   D + Q  +   F +E+  +  L + N++  L  V+ +    +  
Sbjct: 42  PSGKTVSVAVKCLK-PDVLSQPEAMDDFIREVNAMHSLDHRNLIR-LYGVVLTPPMKMVT 99
Query: 635 EYAPKGTLFDVLHGCLEN-ALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL 693
           E AP G+L D L     +  L   SRY  AV VA+G+ +L    S   +  DL+ RN+ L
Sbjct: 100 ELAPLGSLLDRLRKHQGHFLLGTLSRY--AVQVAEGMGYLE---SKRFIHRDLAARNLLL 154
Query: 694 KSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSV--GYIPPEYAYTMRVTMAGNVYSFGVI 751
            +    +IGD  L + + P      +      V   +  PE   T   + A + + FGV 
Sbjct: 155 ATRDLVKIGDFGLMRAL-PQNDDHXVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVT 213
Query: 752 LLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVAC 811
           L E+ T       G E   W+  N +Q   + H +D    R           +  V V C
Sbjct: 214 LWEMFT------YGQE--PWIGLNGSQ---ILHKIDKEGERLPRPEDCPQ-DIYNVMVQC 261
Query: 812 VSVSPEARPKMKSVLRMLLNAR 833
            +  PE RP   ++   LL A+
Sbjct: 262 WAHKPEDRPTFVALRDFLLEAQ 283

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 5/160 (3%)
Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E +V+ KL +  ++  L  V++ +   +  EY  KG+L D L G     L   
Sbjct: 46  SPEAFLQEAQVMKKLRHEKLVQ-LYAVVSEEPIXIVTEYMSKGSLLDFLKGETGKYLRLP 104
Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
               +A  +A G+A++        +  DL   NI +      ++ D  L ++I+ ++ T 
Sbjct: 105 QLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEXTA 161
Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   + +  PE A   R T+  +V+SFG++L EL T
Sbjct: 162 R-QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT 200

>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1) Length = 350

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 25/197 (12%)
Query: 579 GMSYFIKKLNWSDKIFQLGSHHKFD--KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEY 636
           G  Y IK++N S    ++ S  + +  +E+ VL  + + N++        + S Y+  +Y
Sbjct: 49  GRQYVIKEINIS----RMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDY 104
Query: 637 APKGTLFDVLH---GCL---ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRN 690
              G LF  ++   G L   +  LDW       V +   L  +H      IL  D+ ++N
Sbjct: 105 CEGGDLFKRINAQKGVLFQEDQILDWF------VQICLALKHVH---DRKILHRDIKSQN 155
Query: 691 IFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA-GSVGYIPPEYAYTMRVTMAGNVYSFG 749
           IFL      Q+GD  + +V++   ST  L+    G+  Y+ PE           ++++ G
Sbjct: 156 IFLTKDGTVQLGDFGIARVLN---STVELARACIGTPYYLSPEICENKPYNNKSDIWALG 212
Query: 750 VILLELLTGKTAVNQGN 766
            +L EL T K A   G+
Sbjct: 213 CVLYELCTLKHAFEAGS 229

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 11/166 (6%)
Query: 597 GSHHK--FDKELEVLGKLSNSNVMTPLAYVLASDSA--YLFYEYAPKGTLFDVLHGCLEN 652
           G  H+  + +E+++L  L + +++        + +A   L  EY P G+L D L     +
Sbjct: 73  GPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYL---PRH 129
Query: 653 ALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP 712
           ++  A     A  + +G+A+LH   +   +  DL+ RN+ L + +  +IGD  L K +  
Sbjct: 130 SIGLAQLLLFAQQICEGMAYLH---AQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPE 186
Query: 713 SKSTGSLSTVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                 +     S V +  PE     +   A +V+SFGV L ELLT
Sbjct: 187 GHEXYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLT 232

>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal Sh3 Domain Length = 341

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 111/262 (42%), Gaps = 25/262 (9%)
Query: 577 PSG--MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY 634
           PSG  +S  +K L   D + Q  +   F +E+  +  L + N++  L  V+ +    +  
Sbjct: 36  PSGKTVSVAVKCLK-PDVLSQPEAMDDFIREVNAMHSLDHRNLIR-LYGVVLTPPMKMVT 93
Query: 635 EYAPKGTLFDVLHGCLEN-ALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL 693
           E AP G+L D L     +  L   SRY  AV VA+G+ +L    S   +  DL+ RN+ L
Sbjct: 94  ELAPLGSLLDRLRKHQGHFLLGTLSRY--AVQVAEGMGYLE---SKRFIHRDLAARNLLL 148
Query: 694 KSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSV--GYIPPEYAYTMRVTMAGNVYSFGVI 751
            +    +IGD  L + + P      +      V   +  PE   T   + A + + FGV 
Sbjct: 149 ATRDLVKIGDFGLMRAL-PQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVT 207
Query: 752 LLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVAC 811
           L E+ T       G E   W+  N +Q   + H +D    R           +  V V C
Sbjct: 208 LWEMFT------YGQE--PWIGLNGSQ---ILHKIDKEGERLPRPEDCPQ-DIYNVMVQC 255
Query: 812 VSVSPEARPKMKSVLRMLLNAR 833
            +  PE RP   ++   LL A+
Sbjct: 256 WAHKPEDRPTFVALRDFLLEAQ 277

>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 10/164 (6%)
Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSA----YLFYEYAPKGTLFDVLHGCLENALDW 656
           +F +E +    L++  ++   A   A   A    Y+  EY    TL D++H   E  +  
Sbjct: 58  RFRREAQNAAALNHPAIVAVYATGEAETPAGPLPYIVMEYVDGVTLRDIVH--TEGPMTP 115
Query: 657 ASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI-DPSKS 715
                +     Q L F H    N I+  D+   NI + +    ++ D  + + I D   S
Sbjct: 116 KRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNS 172
Query: 716 TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
               + V G+  Y+ PE A    V    +VYS G +L E+LTG+
Sbjct: 173 VTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGE 216

>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of The Tyrosine Kinase Ack1 Length = 291

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 111/262 (42%), Gaps = 25/262 (9%)
Query: 577 PSG--MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY 634
           PSG  +S  +K L   D + Q  +   F +E+  +  L + N++  L  V+ +    +  
Sbjct: 42  PSGKTVSVAVKCLK-PDVLSQPEAMDDFIREVNAMHSLDHRNLIR-LYGVVLTPPMKMVT 99
Query: 635 EYAPKGTLFDVLHGCLEN-ALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL 693
           E AP G+L D L     +  L   SRY  AV VA+G+ +L    S   +  DL+ RN+ L
Sbjct: 100 ELAPLGSLLDRLRKHQGHFLLGTLSRY--AVQVAEGMGYLE---SKRFIHRDLAARNLLL 154
Query: 694 KSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSV--GYIPPEYAYTMRVTMAGNVYSFGVI 751
            +    +IGD  L + + P      +      V   +  PE   T   + A + + FGV 
Sbjct: 155 ATRDLVKIGDFGLMRAL-PQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVT 213
Query: 752 LLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVAC 811
           L E+ T       G E   W+  N +Q   + H +D    R           +  V V C
Sbjct: 214 LWEMFT------YGQE--PWIGLNGSQ---ILHKIDKEGERLPRPEDCPQ-DIYNVMVQC 261
Query: 812 VSVSPEARPKMKSVLRMLLNAR 833
            +  PE RP   ++   LL A+
Sbjct: 262 WAHKPEDRPTFVALRDFLLEAQ 283

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 9/157 (5%)
Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASRY 660
           F  E  V+ +L +SN++  L  ++      Y+  EY  KG+L D L     + L      
Sbjct: 61  FLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLL 120
Query: 661 SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLS 720
             ++ V + + +L G   N  +  DL+ RN+ +      ++ D  L K    ++ TG L 
Sbjct: 121 KFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKL- 176
Query: 721 TVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                V +  PE     + +   +V+SFG++L E+ +
Sbjct: 177 ----PVKWTAPEALREKKFSTKSDVWSFGILLWEIYS 209

>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 6/130 (4%)
Query: 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRN 690
           Y+  EY    TL D++H   E  +       +     Q L F H    N I+  D+   N
Sbjct: 92  YIVMEYVDGVTLRDIVH--TEGPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPAN 146
Query: 691 IFLKSLKEPQIGDIELCKVI-DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFG 749
           I + +    ++ D  + + I D   S    + V G+  Y+ PE A    V    +VYS G
Sbjct: 147 IMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLG 206
Query: 750 VILLELLTGK 759
            +L E+LTG+
Sbjct: 207 CVLYEVLTGE 216

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 6/130 (4%)
Query: 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRN 690
           Y+  EY    TL D++H   E  +       +     Q L F H    N I+  D+   N
Sbjct: 92  YIVMEYVDGVTLRDIVH--TEGPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPAN 146
Query: 691 IFLKSLKEPQIGDIELCKVI-DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFG 749
           I + +    ++ D  + + I D   S    + V G+  Y+ PE A    V    +VYS G
Sbjct: 147 IMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLG 206
Query: 750 VILLELLTGK 759
            +L E+LTG+
Sbjct: 207 CVLYEVLTGE 216

>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase Domain From Human Length = 314

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 95/226 (42%), Gaps = 36/226 (15%)
Query: 560 LNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGK--LSNSNV 617
           L ++ + RF   +KA +   M+ F+     + KIF L     +  E E+     + + N+
Sbjct: 20  LEIKARGRFGCVWKAQL---MNDFV-----AVKIFPLQDKQSWQSEREIFSTPGMKHENL 71
Query: 618 MTPLAYVLASDSA-------YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGL 670
              L ++ A           +L   +  KG+L D L G   N + W     +A  +++GL
Sbjct: 72  ---LQFIAAEKRGSNLEVELWLITAFHDKGSLTDYLKG---NIITWNELCHVAETMSRGL 125
Query: 671 AFLH-------GFTSNP-ILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
           ++LH       G    P I   D  ++N+ LKS     + D  L    +P K  G     
Sbjct: 126 SYLHEDVPWCRGEGHKPSIAHRDFKSKNVLLKSDLTAVLADFGLAVRFEPGKPPGDTHGQ 185
Query: 723 AGSVGYIPPEYA-----YTMRVTMAGNVYSFGVILLELLTGKTAVN 763
            G+  Y+ PE       +     +  ++Y+ G++L EL++   A +
Sbjct: 186 VGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELVSRCKAAD 231

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/265 (21%), Positives = 111/265 (41%), Gaps = 45/265 (16%)
Query: 584 IKKLNWSDK---IFQLGSHHK---FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYA 637
           + K  W  K   I Q+ S  +   F  EL  L ++++ N++    Y    +   L  EYA
Sbjct: 25  VCKAKWRAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVK--LYGACLNPVCLVMEYA 82
Query: 638 PKGTLFDVLHGC-------LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRN 690
             G+L++VLHG          +A+ W  + S      QG+A+LH      ++  DL   N
Sbjct: 83  EGGSLYNVLHGAEPLPYYTAAHAMSWCLQCS------QGVAYLHSMQPKALIHRDLKPPN 136
Query: 691 IFLKSLKEPQIGDI-ELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFG 749
           + L +      G + ++C           ++   GS  ++ PE       +   +V+S+G
Sbjct: 137 LLLVAG-----GTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWG 191
Query: 750 VILLELLTGKTAVNQGNELA---KWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLK 806
           +IL E++T +   ++    A    W + N               +R  L +++    +  
Sbjct: 192 IILWEVITRRKPFDEIGGPAFRIMWAVHNG--------------TRPPL-IKNLPKPIES 236
Query: 807 VAVACVSVSPEARPKMKSVLRMLLN 831
           +   C S  P  RP M+ +++++ +
Sbjct: 237 LMTRCWSKDPSQRPSMEEIVKIMTH 261

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 6/130 (4%)
Query: 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRN 690
           Y+  EY    TL D++H   E  +       +     Q L F H    N I+  D+   N
Sbjct: 92  YIVMEYVDGVTLRDIVH--TEGPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPAN 146
Query: 691 IFLKSLKEPQIGDIELCKVI-DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFG 749
           I + +    ++ D  + + I D   S    + V G+  Y+ PE A    V    +VYS G
Sbjct: 147 ILISATNAVKVVDFGIARAIADSGNSVXQTAAVIGTAQYLSPEQARGDSVDARSDVYSLG 206
Query: 750 VILLELLTGK 759
            +L E+LTG+
Sbjct: 207 CVLYEVLTGE 216

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 6/130 (4%)
Query: 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRN 690
           Y+  EY    TL D++H   E  +       +     Q L F H    N I+  D+   N
Sbjct: 92  YIVMEYVDGVTLRDIVH--TEGPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPAN 146
Query: 691 IFLKSLKEPQIGDIELCKVI-DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFG 749
           I + +    ++ D  + + I D   S    + V G+  Y+ PE A    V    +VYS G
Sbjct: 147 IMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLG 206
Query: 750 VILLELLTGK 759
            +L E+LTG+
Sbjct: 207 CVLYEVLTGE 216

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 102/241 (42%), Gaps = 39/241 (16%)
Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGC-------LENAL 654
           F  EL  L ++++ N++    Y    +   L  EYA  G+L++VLHG          +A+
Sbjct: 48  FIVELRQLSRVNHPNIVK--LYGACLNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAM 105
Query: 655 DWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDI-ELCKVIDPS 713
            W       +  +QG+A+LH      ++  DL   N+ L +      G + ++C      
Sbjct: 106 SW------CLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAG-----GTVLKICDFGTAC 154
Query: 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELA---K 770
                ++   GS  ++ PE       +   +V+S+G+IL E++T +   ++    A    
Sbjct: 155 DIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIM 214
Query: 771 WVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLL 830
           W + N               +R  L +++    +  +   C S  P  RP M+ +++++ 
Sbjct: 215 WAVHNG--------------TRPPL-IKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMT 259
Query: 831 N 831
           +
Sbjct: 260 H 260

>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 6/130 (4%)
Query: 631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRN 690
           Y+  EY    TL D++H   E  +       +     Q L F H    N I+  D+   N
Sbjct: 109 YIVMEYVDGVTLRDIVH--TEGPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPAN 163
Query: 691 IFLKSLKEPQIGDIELCKVI-DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFG 749
           I + +    ++ D  + + I D   S    + V G+  Y+ PE A    V    +VYS G
Sbjct: 164 IMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLG 223
Query: 750 VILLELLTGK 759
            +L E+LTG+
Sbjct: 224 CVLYEVLTGE 233

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 19/167 (11%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCL---ENALDWASRY 660
           +E ++   L + N++      L   +  L  E+A  G L  VL G     +  ++WA   
Sbjct: 55  QEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWA--- 111
Query: 661 SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDI--ELCKVID-----PS 713
              V +A+G+ +LH     PI+  DL + NI +  L++ + GD+  ++ K+ D       
Sbjct: 112 ---VQIARGMNYLHDEAIVPIIHRDLKSSNILI--LQKVENGDLSNKILKITDFGLAREW 166
Query: 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKT 760
             T  +S  AG+  ++ PE       +   +V+S+GV+L ELLTG+ 
Sbjct: 167 HRTTKMSA-AGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEV 212

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 9/157 (5%)
Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASRY 660
           F  E  V+ +L +SN++  L  ++      Y+  EY  KG+L D L     + L      
Sbjct: 233 FLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLL 292
Query: 661 SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLS 720
             ++ V + + +L G   N  +  DL+ RN+ +      ++ D  L K    ++ TG L 
Sbjct: 293 KFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKL- 348
Query: 721 TVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                V +  PE     + +   +V+SFG++L E+ +
Sbjct: 349 ----PVKWTAPEALREKKFSTKSDVWSFGILLWEIYS 381

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 9/157 (5%)
Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASRY 660
           F  E  V+ +L +SN++  L  ++      Y+  EY  KG+L D L     + L      
Sbjct: 52  FLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLL 111
Query: 661 SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLS 720
             ++ V + + +L G   N  +  DL+ RN+ +      ++ D  L K    ++ TG L 
Sbjct: 112 KFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKL- 167
Query: 721 TVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                V +  PE       +   +V+SFG++L E+ +
Sbjct: 168 ----PVKWTAPEALREAAFSTKSDVWSFGILLWEIYS 200

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 9/159 (5%)
Query: 602 FDKELEVLGKLSNSNVMTPLAYV--LASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
           + +E+E+L  L + +++            S  L  EY P G+L D L     + +  A  
Sbjct: 57  WQREIEILRTLYHEHIVKYKGCCEDQGEKSVQLVMEYVPLGSLRDYL---PRHCVGLAQL 113
Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
              A  + +G+A+LH   +   +   L+ RN+ L + +  +IGD  L K +        +
Sbjct: 114 LLFAQQICEGMAYLH---AQHYIHRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRV 170
Query: 720 STVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                S V +  PE     +   A +V+SFGV L ELLT
Sbjct: 171 REDGDSPVFWYAPECLKECKFYYASDVWSFGVTLYELLT 209

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 9/159 (5%)
Query: 602 FDKELEVLGKLSNSNVMTPLAYV--LASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
           + +E+E+L  L + +++            S  L  EY P G+L D L     + +  A  
Sbjct: 58  WQREIEILRTLYHEHIVKYKGCCEDQGEKSVQLVMEYVPLGSLRDYL---PRHCVGLAQL 114
Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
              A  + +G+A+LH   +   +   L+ RN+ L + +  +IGD  L K +        +
Sbjct: 115 LLFAQQICEGMAYLH---AQHYIHRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRV 171
Query: 720 STVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                S V +  PE     +   A +V+SFGV L ELLT
Sbjct: 172 REDGDSPVFWYAPECLKECKFYYASDVWSFGVTLYELLT 210

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 7/142 (4%)
Query: 626 ASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLD 685
             ++ +   EY   G L   +  C +  L  A+ Y  A  +  GL FLH   S  I+  D
Sbjct: 89  TKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFY--AAEIILGLQFLH---SKGIVYRD 143
Query: 686 LSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNV 745
           L   NI L      +I D  +CK  +        +   G+  YI PE     +   + + 
Sbjct: 144 LKLDNILLDKDGHIKIADFGMCK--ENMLGDAKTNXFCGTPDYIAPEILLGQKYNHSVDW 201
Query: 746 YSFGVILLELLTGKTAVNQGNE 767
           +SFGV+L E+L G++  +  +E
Sbjct: 202 WSFGVLLYEMLIGQSPFHGQDE 223

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 11/167 (6%)
Query: 596 LGSHHK--FDKELEVLGKLSNSNVMTPLAYV--LASDSAYLFYEYAPKGTLFDVLHGCLE 651
            G  H+  + +E+++L  L + +++            S  L  EY P G+L D L     
Sbjct: 55  CGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDYL---PR 111
Query: 652 NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
           +++  A     A  + +G+A+LH   S   +  +L+ RN+ L + +  +IGD  L K + 
Sbjct: 112 HSIGLAQLLLFAQQICEGMAYLH---SQHYIHRNLAARNVLLDNDRLVKIGDFGLAKAVP 168
Query: 712 PSKSTGSLSTVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                  +     S V +  PE     +   A +V+SFGV L ELLT
Sbjct: 169 EGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLT 215

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 7/142 (4%)
Query: 626 ASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLD 685
             ++ +   EY   G L   +  C +  L  A+ Y  A  +  GL FLH   S  I+  D
Sbjct: 90  TKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFY--AAEIILGLQFLH---SKGIVYRD 144
Query: 686 LSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNV 745
           L   NI L      +I D  +CK  +        +   G+  YI PE     +   + + 
Sbjct: 145 LKLDNILLDKDGHIKIADFGMCK--ENMLGDAKTNEFCGTPDYIAPEILLGQKYNHSVDW 202
Query: 746 YSFGVILLELLTGKTAVNQGNE 767
           +SFGV+L E+L G++  +  +E
Sbjct: 203 WSFGVLLYEMLIGQSPFHGQDE 224

>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g Hyperactivating Mutant In Apo Form. Length = 303

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 31/174 (17%)
Query: 612 LSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY-SIAVGVAQGL 670
           L   N + P+  V    + ++  EY   GTL+D++H   EN       Y  +   + + L
Sbjct: 72  LERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHS--ENLNQQRDEYWRLFRQILEAL 129
Query: 671 AFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS------------KSTGS 718
           +++H   S  I+  DL   NIF+   +  +IGD  L K +  S             S+ +
Sbjct: 130 SYIH---SQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDN 186
Query: 719 LSTVAGSVGYIPPEY-----AYTMRVTMAGNVYSFGVILLELL----TGKTAVN 763
           L++  G+  Y+  E       Y  ++ M    YS G+I  E++    TG   VN
Sbjct: 187 LTSAIGTAMYVATEVLDGTGHYNEKIDM----YSLGIIFFEMIYPFSTGMERVN 236

>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor Length = 275

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 71/262 (27%), Positives = 110/262 (41%), Gaps = 25/262 (9%)
Query: 577 PSG--MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY 634
           PSG  +S  +K L   D + Q  +   F +E+  +  L + N++     VL +    +  
Sbjct: 32  PSGKTVSVAVKCLK-PDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVL-TPPMKMVT 89
Query: 635 EYAPKGTLFDVLHGCLEN-ALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL 693
           E AP G+L D L     +  L   SRY  AV VA+G+ +L    S   +  DL+ RN+ L
Sbjct: 90  ELAPLGSLLDRLRKHQGHFLLGTLSRY--AVQVAEGMGYLE---SKRFIHRDLAARNLLL 144
Query: 694 KSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSV--GYIPPEYAYTMRVTMAGNVYSFGVI 751
            +    +IGD  L + + P      +      V   +  PE   T   + A + + FGV 
Sbjct: 145 ATRDLVKIGDFGLMRAL-PQNDDHXVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVT 203
Query: 752 LLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVAC 811
           L E+ T       G E   W+  N +Q   + H +D    R           +  V V C
Sbjct: 204 LWEMFT------YGQE--PWIGLNGSQ---ILHKIDKEGERLPRPEDCPQ-DIYNVMVQC 251
Query: 812 VSVSPEARPKMKSVLRMLLNAR 833
            +  PE RP   ++   LL A+
Sbjct: 252 WAHKPEDRPTFVALRDFLLEAQ 273

>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a) Kinase Domain In Complex With Dorsomorphin Length = 322

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 29/222 (13%)
Query: 560 LNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEV--LGKLSNSNV 617
           L V+ + RF   +KA +   ++ ++     + KIF +     +  E EV  L  + + N+
Sbjct: 29  LEVKARGRFGCVWKAQL---LNEYV-----AVKIFPIQDKQSWQNEYEVYSLPGMKHENI 80
Query: 618 MTPLAYVLASDSA----YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFL 673
           +  +       S     +L   +  KG+L D L     N + W     IA  +A+GLA+L
Sbjct: 81  LQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKA---NVVSWNELCHIAETMARGLAYL 137
Query: 674 H----GFTSN---PILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSV 726
           H    G        I   D+ ++N+ LK+     I D  L    +  KS G      G+ 
Sbjct: 138 HEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTR 197
Query: 727 GYIPPEYA-----YTMRVTMAGNVYSFGVILLELLTGKTAVN 763
            Y+ PE       +     +  ++Y+ G++L EL +  TA +
Sbjct: 198 RYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAAD 239

>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Length = 284

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 114/281 (40%), Gaps = 54/281 (19%)
Query: 568 FSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVM-------- 618
           F   +KA     G +Y IK++ ++++        K ++E++ L KL + N++        
Sbjct: 24  FGQVFKAKHRIDGKTYVIKRVKYNNE--------KAEREVKALAKLDHVNIVHYNGCWDG 75
Query: 619 ------TPLAYVLASDSAYLF--YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGL 670
                 T       S +  LF   E+  KGTL   +       LD      +   + +G+
Sbjct: 76  FDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGV 135
Query: 671 AFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIP 730
            ++H   S  ++  DL   NIFL   K+ +IGD  L   +   K+ G      G++ Y+ 
Sbjct: 136 DYIH---SKKLINRDLKPSNIFLVDTKQVKIGDFGL---VTSLKNDGKRXRSKGTLRYMS 189
Query: 731 PEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWV--LRNSAQQDKLDHILDF 788
           PE   +       ++Y+ G+IL ELL      +   E +K+   LR+    D  D     
Sbjct: 190 PEQISSQDYGKEVDLYALGLILAELL---HVCDTAFETSKFFTDLRDGIISDIFD----- 241
Query: 789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
                      +  T+L+     +S  PE RP    +LR L
Sbjct: 242 ----------KKEKTLLQ---KLLSKKPEDRPNTSEILRTL 269

>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain Length = 277

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 71/262 (27%), Positives = 110/262 (41%), Gaps = 25/262 (9%)
Query: 577 PSG--MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY 634
           PSG  +S  +K L   D + Q  +   F +E+  +  L + N++     VL +    +  
Sbjct: 36  PSGKTVSVAVKCLK-PDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVL-TPPMKMVT 93
Query: 635 EYAPKGTLFDVLHGCLEN-ALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL 693
           E AP G+L D L     +  L   SRY  AV VA+G+ +L    S   +  DL+ RN+ L
Sbjct: 94  ELAPLGSLLDRLRKHQGHFLLGTLSRY--AVQVAEGMGYLE---SKRFIHRDLAARNLLL 148
Query: 694 KSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSV--GYIPPEYAYTMRVTMAGNVYSFGVI 751
            +    +IGD  L + + P      +      V   +  PE   T   + A + + FGV 
Sbjct: 149 ATRDLVKIGDFGLMRAL-PQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVT 207
Query: 752 LLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVAC 811
           L E+ T       G E   W+  N +Q   + H +D    R           +  V V C
Sbjct: 208 LWEMFT------YGQE--PWIGLNGSQ---ILHKIDKEGERLPRPEDCPQ-DIYNVMVQC 255
Query: 812 VSVSPEARPKMKSVLRMLLNAR 833
            +  PE RP   ++   LL A+
Sbjct: 256 WAHKPEDRPTFVALRDFLLEAQ 277

>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-amino-1-(4- Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol Length = 273

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 71/262 (27%), Positives = 110/262 (41%), Gaps = 25/262 (9%)
Query: 577 PSG--MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY 634
           PSG  +S  +K L   D + Q  +   F +E+  +  L + N++     VL +    +  
Sbjct: 32  PSGKTVSVAVKCLK-PDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVL-TPPMKMVT 89
Query: 635 EYAPKGTLFDVLHGCLEN-ALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL 693
           E AP G+L D L     +  L   SRY  AV VA+G+ +L    S   +  DL+ RN+ L
Sbjct: 90  ELAPLGSLLDRLRKHQGHFLLGTLSRY--AVQVAEGMGYLE---SKRFIHRDLAARNLLL 144
Query: 694 KSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSV--GYIPPEYAYTMRVTMAGNVYSFGVI 751
            +    +IGD  L + + P      +      V   +  PE   T   + A + + FGV 
Sbjct: 145 ATRDLVKIGDFGLMRAL-PQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVT 203
Query: 752 LLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVAC 811
           L E+ T       G E   W+  N +Q   + H +D    R           +  V V C
Sbjct: 204 LWEMFT------YGQE--PWIGLNGSQ---ILHKIDKEGERLPRPEDCPQ-DIYNVMVQC 251
Query: 812 VSVSPEARPKMKSVLRMLLNAR 833
            +  PE RP   ++   LL A+
Sbjct: 252 WAHKPEDRPTFVALRDFLLEAQ 273

>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95 Length = 276

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 71/262 (27%), Positives = 110/262 (41%), Gaps = 25/262 (9%)
Query: 577 PSG--MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY 634
           PSG  +S  +K L   D + Q  +   F +E+  +  L + N++     VL +    +  
Sbjct: 32  PSGKTVSVAVKCLK-PDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVL-TPPMKMVT 89
Query: 635 EYAPKGTLFDVLHGCLEN-ALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL 693
           E AP G+L D L     +  L   SRY  AV VA+G+ +L    S   +  DL+ RN+ L
Sbjct: 90  ELAPLGSLLDRLRKHQGHFLLGTLSRY--AVQVAEGMGYLE---SKRFIHRDLAARNLLL 144
Query: 694 KSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSV--GYIPPEYAYTMRVTMAGNVYSFGVI 751
            +    +IGD  L + + P      +      V   +  PE   T   + A + + FGV 
Sbjct: 145 ATRDLVKIGDFGLMRAL-PQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVT 203
Query: 752 LLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVAC 811
           L E+ T       G E   W+  N +Q   + H +D    R           +  V V C
Sbjct: 204 LWEMFT------YGQE--PWIGLNGSQ---ILHKIDKEGERLPRPEDCPQ-DIYNVMVQC 251
Query: 812 VSVSPEARPKMKSVLRMLLNAR 833
            +  PE RP   ++   LL A+
Sbjct: 252 WAHKPEDRPTFVALRDFLLEAQ 273

>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights Into Receptor Autoregulation Length = 343

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 98/250 (39%), Gaps = 38/250 (15%)
Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL------------HGC 649
           F +E  ++ +  N N++  L          L +EY   G L + L            H  
Sbjct: 97  FQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSD 156
Query: 650 LEN----------ALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEP 699
           L             L  A +  IA  VA G+A+L   +    +  DL+TRN  +      
Sbjct: 157 LSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYL---SERKFVHRDLATRNCLVGENMVV 213
Query: 700 QIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
           +I D  L + I  +    +    A  + ++PPE  +  R T   +V+++GV+L E+ +  
Sbjct: 214 KIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYG 273
Query: 760 TAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEAR 819
                G           A ++ + ++ D N+         ++  ++++   C S  P  R
Sbjct: 274 LQPYYG----------MAHEEVIYYVRDGNILACPENCPLELYNLMRL---CWSKLPADR 320
Query: 820 PKMKSVLRML 829
           P   S+ R+L
Sbjct: 321 PSFCSIHRIL 330

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 11/167 (6%)
Query: 596 LGSHHK--FDKELEVLGKLSNSNVMTPLAYV--LASDSAYLFYEYAPKGTLFDVLHGCLE 651
            G  H+  + +E+++L  L + +++            S  L  EY P G+L D L     
Sbjct: 55  CGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDYL---PR 111
Query: 652 NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
           +++  A     A  + +G+A+LH   +   +  +L+ RN+ L + +  +IGD  L K + 
Sbjct: 112 HSIGLAQLLLFAQQICEGMAYLH---AQHYIHRNLAARNVLLDNDRLVKIGDFGLAKAVP 168
Query: 712 PSKSTGSLSTVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                  +     S V +  PE     +   A +V+SFGV L ELLT
Sbjct: 169 EGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLT 215

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 86/195 (44%), Gaps = 10/195 (5%)
Query: 1   MQSCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVXXXXXX 60
           + +  G+  L+ LNFS N++  L        LE LD SSN +  +I++   +L       
Sbjct: 144 ISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKV-SDISV-LAKLTNLESLI 201
Query: 61  XXXXXXXGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPD 120
                     P  LG    L+EL L+GN         +A   NLT +DL+ N +S   P 
Sbjct: 202 ATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP- 256
Query: 121 RIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLS 180
            +  L+KL  L L AN +    P  LA +T L+    N+N+     P    + L  L L 
Sbjct: 257 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 313
Query: 181 YNKLLGVIPIDLLSH 195
           +N +  + P+  L+ 
Sbjct: 314 FNNISDISPVSSLTK 328

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 122/255 (47%), Gaps = 21/255 (8%)
Query: 80  LEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLD 139
           L +++++ N      P  +A+  NLT + L  N ++   P  +  L+ L  L LS+N + 
Sbjct: 87  LVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS 142
Query: 140 GRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQ 199
               ++L+ +T+L +   + N+ +   P      L  LD+S NK+  +  +  L+  NL+
Sbjct: 143 DI--SALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT--NLE 198
Query: 200 TIDLSVNMLEGSLPQNMSPNLVRLRLGTNLL--IGEIPSATFTSLEKLTYLELDNNSFTG 257
           ++  + N +    P  +  NL  L L  N L  IG     T  SL  LT L+L NN  + 
Sbjct: 199 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-----TLASLTNLTDLDLANNQISN 253
Query: 258 MIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLL 317
           + P  L     LT L L  N+++   P+     G+  + NL+LN+   E  S  S LK L
Sbjct: 254 LAP--LSGLTKLTELKLGANQISNISPLA----GLTALTNLELNENQLEDISPISNLKNL 307
Query: 318 STMNISWNSLSGSIP 332
           + + + +N++S   P
Sbjct: 308 TYLTLYFNNISDISP 322

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 7/165 (4%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASRYSI 662
           +E +V+ +L +      L +    D   Y    YA  G L   +      + D       
Sbjct: 81  RERDVMSRLDHP-FFVKLYFTFQDDEKLYFGLSYAKNGCLLKYIRKI--GSFDETCTRFY 137
Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
              +   L +LHG     I+  DL   NI L      QI D    KV+ P       ++ 
Sbjct: 138 TAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSF 194
Query: 723 AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767
            G+  Y+ PE       + + ++++ G I+ +L+ G      GNE
Sbjct: 195 VGTAQYVSPELLTEKSASKSSDLWALGCIIYQLVAGLPPFRAGNE 239

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 62/165 (37%), Gaps = 7/165 (4%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASRYSI 662
           +E +V+ +L +      L +    D   Y    YA  G L   +      + D       
Sbjct: 82  RERDVMSRLDHP-FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFY 138
Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
              +   L +LHG     I+  DL   NI L      QI D    KV+ P       ++ 
Sbjct: 139 TAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSF 195
Query: 723 AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767
            G+  Y+ PE         + ++++ G I+ +L+ G      GNE
Sbjct: 196 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE 240

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 7/165 (4%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASRYSI 662
           +E +V+ +L +      L +    D   Y    YA  G L   +      + D       
Sbjct: 57  RERDVMSRLDHP-FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFY 113
Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
              +   L +LHG     I+  DL   NI L      QI D    KV+ P       +  
Sbjct: 114 TAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXF 170
Query: 723 AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767
            G+  Y+ PE         + ++++ G I+ +L+ G      GNE
Sbjct: 171 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE 215

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 62/165 (37%), Gaps = 7/165 (4%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASRYSI 662
           +E +V+ +L +      L +    D   Y    YA  G L   +      + D       
Sbjct: 78  RERDVMSRLDHP-FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFY 134
Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
              +   L +LHG     I+  DL   NI L      QI D    KV+ P       ++ 
Sbjct: 135 TAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSF 191
Query: 723 AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767
            G+  Y+ PE         + ++++ G I+ +L+ G      GNE
Sbjct: 192 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE 236

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 7/165 (4%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASRYSI 662
           +E +V+ +L +      L +    D   Y    YA  G L   +      + D       
Sbjct: 59  RERDVMSRLDHP-FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFY 115
Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
              +   L +LHG     I+  DL   NI L      QI D    KV+ P       +  
Sbjct: 116 TAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXF 172
Query: 723 AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767
            G+  Y+ PE         + ++++ G I+ +L+ G      GNE
Sbjct: 173 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE 217

>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439 Length = 285

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 13/164 (7%)
Query: 597 GSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL--HGCLENAL 654
           G  H+  +E+E+   L + N++    Y       YL  E+AP+G L+  L  HG      
Sbjct: 57  GVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHG----RF 112
Query: 655 DWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK 714
           D     +    +A  L + H      ++  D+   N+ +    E +I D     V  PS 
Sbjct: 113 DEQRSATFMEELADALHYCH---ERKVIHRDIKPENLLMGYKGELKIADFGWS-VHAPSL 168
Query: 715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTG 758
                  + G++ Y+PPE           +++  GV+  E L G
Sbjct: 169 RR---RXMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVG 209

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 7/165 (4%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASRYSI 662
           +E +V+ +L +      L +    D   Y    YA  G L   +      + D       
Sbjct: 56  RERDVMSRLDHP-FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFY 112
Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
              +   L +LHG     I+  DL   NI L      QI D    KV+ P       +  
Sbjct: 113 TAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXF 169
Query: 723 AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767
            G+  Y+ PE         + ++++ G I+ +L+ G      GNE
Sbjct: 170 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE 214

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 7/165 (4%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASRYSI 662
           +E +V+ +L +      L +    D   Y    YA  G L   +      + D       
Sbjct: 58  RERDVMSRLDHP-FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFY 114
Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
              +   L +LHG     I+  DL   NI L      QI D    KV+ P       +  
Sbjct: 115 TAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXF 171
Query: 723 AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767
            G+  Y+ PE         + ++++ G I+ +L+ G      GNE
Sbjct: 172 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE 216

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 10/195 (5%)
Query: 1   MQSCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVXXXXXX 60
           + +  G+  L+ L+FS N++  L        LE LD SSN +  +I++   +L       
Sbjct: 144 ISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKV-SDISV-LAKLTNLESLI 201
Query: 61  XXXXXXXGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPD 120
                     P  LG    L+EL L+GN         +A   NLT +DL+ N +S   P 
Sbjct: 202 ATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP- 256
Query: 121 RIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLS 180
            +  L+KL  L L AN +    P  LA +T L+    N+N+     P    + L  L L 
Sbjct: 257 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 313
Query: 181 YNKLLGVIPIDLLSH 195
           +N +  + P+  L+ 
Sbjct: 314 FNNISDISPVSSLTK 328

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 123/255 (48%), Gaps = 21/255 (8%)
Query: 80  LEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLD 139
           L +++++ N      P  +A+  NLT + L  N ++   P  +  L+ L  L LS+N + 
Sbjct: 87  LVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS 142
Query: 140 GRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQ 199
               ++L+ +T+L + + + N+ +   P      L  LD+S NK+  +  +  L+  NL+
Sbjct: 143 DI--SALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT--NLE 198
Query: 200 TIDLSVNMLEGSLPQNMSPNLVRLRLGTNLL--IGEIPSATFTSLEKLTYLELDNNSFTG 257
           ++  + N +    P  +  NL  L L  N L  IG     T  SL  LT L+L NN  + 
Sbjct: 199 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-----TLASLTNLTDLDLANNQISN 253
Query: 258 MIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLL 317
           + P  L     LT L L  N+++   P+     G+  + NL+LN+   E  S  S LK L
Sbjct: 254 LAP--LSGLTKLTELKLGANQISNISPLA----GLTALTNLELNENQLEDISPISNLKNL 307
Query: 318 STMNISWNSLSGSIP 332
           + + + +N++S   P
Sbjct: 308 TYLTLYFNNISDISP 322

>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin. Length = 284

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 13/164 (7%)
Query: 597 GSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL--HGCLENAL 654
           G  H+  +E+E+   L + N++    Y       YL  E+AP+G L+  L  HG      
Sbjct: 56  GVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHG----RF 111
Query: 655 DWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK 714
           D     +    +A  L + H      ++  D+   N+ +    E +I D     V  PS 
Sbjct: 112 DEQRSATFMEELADALHYCH---ERKVIHRDIKPENLLMGYKGELKIADFGWS-VHAPSL 167
Query: 715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTG 758
                  + G++ Y+PPE           +++  GV+  E L G
Sbjct: 168 RR---RXMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVG 208

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 33/181 (18%)
Query: 598 SHHKFDKELEVLGKLSNS-NVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHG--CLENAL 654
            H  F  ELEVL KL +  N++  L         YL  EYAP G L D L     LE   
Sbjct: 68  DHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDP 127
Query: 655 DWASRYS------------IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIG 702
            +A   S             A  VA+G+ +L   +    +  DL+ RNI         +G
Sbjct: 128 AFAIANSTASTLSSQQLLHFAADVARGMDYL---SQKQFIHRDLAARNIL--------VG 176
Query: 703 DIELCKVIDPSKSTGSLSTVAGSVGYIPPEYA------YTMRVTMAGNVYSFGVILLELL 756
           +  + K+ D   S G    V  ++G +P  +       Y++  T + +V+S+GV+L E++
Sbjct: 177 ENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNS-DVWSYGVLLWEIV 235
Query: 757 T 757
           +
Sbjct: 236 S 236

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 7/165 (4%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASRYSI 662
           +E +V+ +L +      L +    D   Y    YA  G L   +      + D       
Sbjct: 79  RERDVMSRLDHP-FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFY 135
Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
              +   L +LHG     I+  DL   NI L      QI D    KV+ P       +  
Sbjct: 136 TAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXF 192
Query: 723 AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767
            G+  Y+ PE         + ++++ G I+ +L+ G      GNE
Sbjct: 193 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE 237

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 7/165 (4%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASRYSI 662
           +E +V+ +L +      L +    D   Y    YA  G L   +      + D       
Sbjct: 79  RERDVMSRLDHP-FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFY 135
Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
              +   L +LHG     I+  DL   NI L      QI D    KV+ P       +  
Sbjct: 136 TAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANAF 192
Query: 723 AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767
            G+  Y+ PE         + ++++ G I+ +L+ G      GNE
Sbjct: 193 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE 237

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 10/195 (5%)
Query: 1   MQSCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVXXXXXX 60
           + +  G+  L+ L+FS N++  L        LE LD SSN +  +I++   +L       
Sbjct: 144 ISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKV-SDISV-LAKLTNLESLI 201
Query: 61  XXXXXXXGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPD 120
                     P  LG    L+EL L+GN         +A   NLT +DL+ N +S   P 
Sbjct: 202 ATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP- 256
Query: 121 RIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLS 180
            +  L+KL  L L AN +    P  LA +T L+    N+N+     P    + L  L L 
Sbjct: 257 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 313
Query: 181 YNKLLGVIPIDLLSH 195
           +N +  + P+  L+ 
Sbjct: 314 FNNISDISPVSSLTK 328

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 123/255 (48%), Gaps = 21/255 (8%)
Query: 80  LEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLD 139
           L +++++ N      P  +A+  NLT + L  N ++   P  +  L+ L  L LS+N + 
Sbjct: 87  LVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS 142
Query: 140 GRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQ 199
               ++L+ +T+L + + + N+ +   P      L  LD+S NK+  +  +  L+  NL+
Sbjct: 143 DI--SALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT--NLE 198
Query: 200 TIDLSVNMLEGSLPQNMSPNLVRLRLGTNLL--IGEIPSATFTSLEKLTYLELDNNSFTG 257
           ++  + N +    P  +  NL  L L  N L  IG     T  SL  LT L+L NN  + 
Sbjct: 199 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-----TLASLTNLTDLDLANNQISN 253
Query: 258 MIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLL 317
           + P  L     LT L L  N+++   P+     G+  + NL+LN+   E  S  S LK L
Sbjct: 254 LAP--LSGLTKLTELKLGANQISNISPLA----GLTALTNLELNENQLEDISPISNLKNL 307
Query: 318 STMNISWNSLSGSIP 332
           + + + +N++S   P
Sbjct: 308 TYLTLYFNNISDISP 322

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 7/165 (4%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASRYSI 662
           +E +V+ +L +      L +    D   Y    YA  G L   +      + D       
Sbjct: 81  RERDVMSRLDHP-FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFY 137
Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
              +   L +LHG     I+  DL   NI L      QI D    KV+ P       +  
Sbjct: 138 TAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXF 194
Query: 723 AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767
            G+  Y+ PE         + ++++ G I+ +L+ G      GNE
Sbjct: 195 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE 239

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 7/165 (4%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASRYSI 662
           +E +V+ +L +      L +    D   Y    YA  G L   +      + D       
Sbjct: 86  RERDVMSRLDHP-FFVKLYFCFQDDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFY 142
Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
              +   L +LHG     I+  DL   NI L      QI D    KV+ P       +  
Sbjct: 143 TAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXF 199
Query: 723 AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767
            G+  Y+ PE         + ++++ G I+ +L+ G      GNE
Sbjct: 200 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE 244

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 7/165 (4%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASRYSI 662
           +E +V+ +L +      L +    D   Y    YA  G L   +      + D       
Sbjct: 79  RERDVMSRLDHP-FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFY 135
Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
              +   L +LHG     I+  DL   NI L      QI D    KV+ P       +  
Sbjct: 136 TAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXF 192
Query: 723 AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767
            G+  Y+ PE         + ++++ G I+ +L+ G      GNE
Sbjct: 193 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE 237

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 7/165 (4%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASRYSI 662
           +E +V+ +L +      L +    D   Y    YA  G L   +      + D       
Sbjct: 81  RERDVMSRLDHP-FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFY 137
Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
              +   L +LHG     I+  DL   NI L      QI D    KV+ P       +  
Sbjct: 138 TAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXF 194
Query: 723 AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767
            G+  Y+ PE         + ++++ G I+ +L+ G      GNE
Sbjct: 195 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE 239

>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain Length = 306

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 29/197 (14%)
Query: 635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK 694
           E+  KGTL   +       LD      +   + +G+ ++H   S  ++  DL   NIFL 
Sbjct: 114 EFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIH---SKKLIHRDLKPSNIFLV 170
Query: 695 SLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLE 754
             K+ +IGD  L   +   K+ G  +   G++ Y+ PE   +       ++Y+ G+IL E
Sbjct: 171 DTKQVKIGDFGLVTSL---KNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE 227
Query: 755 LLTGKTAVNQGNELAKWV--LRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACV 812
           LL      +   E +K+   LR+    D  D                +  T+L+     +
Sbjct: 228 LL---HVCDTAFETSKFFTDLRDGIISDIFD---------------KKEKTLLQ---KLL 266
Query: 813 SVSPEARPKMKSVLRML 829
           S  PE RP    +LR L
Sbjct: 267 SKKPEDRPNTSEILRTL 283

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 7/165 (4%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASRYSI 662
           +E +V+ +L +      L +    D   Y    YA  G L   +      + D       
Sbjct: 81  RERDVMSRLDHP-FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFY 137
Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
              +   L +LHG     I+  DL   NI L      QI D    KV+ P       +  
Sbjct: 138 TAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXF 194
Query: 723 AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767
            G+  Y+ PE         + ++++ G I+ +L+ G      GNE
Sbjct: 195 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE 239

>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild- Type In Apo Form. Length = 303

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 31/174 (17%)
Query: 612 LSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY-SIAVGVAQGL 670
           L   N + P+  V    + ++  EY    TL+D++H   EN       Y  +   + + L
Sbjct: 72  LERRNFVKPMTAVKKKSTLFIQMEYCENRTLYDLIHS--ENLNQQRDEYWRLFRQILEAL 129
Query: 671 AFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS------------KSTGS 718
           +++H   S  I+  DL   NIF+   +  +IGD  L K +  S             S+ +
Sbjct: 130 SYIH---SQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDN 186
Query: 719 LSTVAGSVGYIPPEY-----AYTMRVTMAGNVYSFGVILLELL----TGKTAVN 763
           L++  G+  Y+  E       Y  ++ M    YS G+I  E++    TG   VN
Sbjct: 187 LTSAIGTAMYVATEVLDGTGHYNEKIDM----YSLGIIFFEMIYPFSTGMERVN 236

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 7/165 (4%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASRYSI 662
           +E +V+ +L +      L +    D   Y    YA  G L   +      + D       
Sbjct: 82  RERDVMSRLDHP-FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFY 138
Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
              +   L +LHG     I+  DL   NI L      QI D    KV+ P       +  
Sbjct: 139 TAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXF 195
Query: 723 AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767
            G+  Y+ PE         + ++++ G I+ +L+ G      GNE
Sbjct: 196 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE 240

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 7/165 (4%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASRYSI 662
           +E +V+ +L +      L +    D   Y    YA  G L   +      + D       
Sbjct: 79  RERDVMSRLDHP-FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFY 135
Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
              +   L +LHG     I+  DL   NI L      QI D    KV+ P       +  
Sbjct: 136 TAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXF 192
Query: 723 AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767
            G+  Y+ PE         + ++++ G I+ +L+ G      GNE
Sbjct: 193 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE 237

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 94/233 (40%), Gaps = 28/233 (12%)
Query: 544 RSNIDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQL------- 596
           R N+ F   ++A         K   S  Y+ V   G   + + L   DK+  +       
Sbjct: 11  RENLYFQGDLQATPGMFITSKKGHLSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKII 70
Query: 597 -------GSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFD-VLHG 648
                   S+ K  +E+ VL  L + N+M    +     + YL  E    G LFD ++H 
Sbjct: 71  RKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEIIHR 130
Query: 649 CLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEP---QIGDIE 705
              N +D A    I   V  G+ +LH    + I+  DL   N+ L+S ++    +I D  
Sbjct: 131 MKFNEVDAA---VIIKQVLSGVTYLH---KHNIVHRDLKPENLLLESKEKDALIKIVDFG 184
Query: 706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTG 758
           L  V +  K    +    G+  YI PE     +     +V+S GVIL  LL G
Sbjct: 185 LSAVFENQK---KMKERLGTAYYIAPE-VLRKKYDEKCDVWSIGVILFILLAG 233

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 7/165 (4%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASRYSI 662
           +E +V+ +L +      L +    D   Y    YA  G L   +      + D       
Sbjct: 81  RERDVMSRLDHP-FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFY 137
Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
              +   L +LHG     I+  DL   NI L      QI D    KV+ P       +  
Sbjct: 138 TAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXF 194
Query: 723 AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767
            G+  Y+ PE         + ++++ G I+ +L+ G      GNE
Sbjct: 195 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE 239

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 7/165 (4%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASRYSI 662
           +E +V+ +L +      L +    D   Y    YA  G L   +      + D       
Sbjct: 63  RERDVMSRLDHP-FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFY 119
Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
              +   L +LHG     I+  DL   NI L      QI D    KV+ P       +  
Sbjct: 120 TAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXF 176
Query: 723 AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767
            G+  Y+ PE         + ++++ G I+ +L+ G      GNE
Sbjct: 177 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE 221

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 7/165 (4%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASRYSI 662
           +E +V+ +L +      L +    D   Y    YA  G L   +      + D       
Sbjct: 84  RERDVMSRLDHP-FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFY 140
Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
              +   L +LHG     I+  DL   NI L      QI D    KV+ P       +  
Sbjct: 141 TAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXF 197
Query: 723 AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767
            G+  Y+ PE         + ++++ G I+ +L+ G      GNE
Sbjct: 198 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE 242

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 7/165 (4%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASRYSI 662
           +E +V+ +L +      L +    D   Y    YA  G L   +      + D       
Sbjct: 78  RERDVMSRLDHP-FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFY 134
Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
              +   L +LHG     I+  DL   NI L      QI D    KV+ P       +  
Sbjct: 135 TAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXF 191
Query: 723 AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767
            G+  Y+ PE         + ++++ G I+ +L+ G      GNE
Sbjct: 192 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE 236

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 7/165 (4%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASRYSI 662
           +E +V+ +L +      L +    D   Y    YA  G L   +      + D       
Sbjct: 81  RERDVMSRLDHP-FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFY 137
Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
              +   L +LHG     I+  DL   NI L      QI D    KV+ P       +  
Sbjct: 138 TAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXF 194
Query: 723 AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767
            G+  Y+ PE         + ++++ G I+ +L+ G      GNE
Sbjct: 195 VGTAQYVSPELLTEKSAXKSSDLWALGCIIYQLVAGLPPFRAGNE 239

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 33/181 (18%)
Query: 598 SHHKFDKELEVLGKLSNS-NVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHG--CLENAL 654
            H  F  ELEVL KL +  N++  L         YL  EYAP G L D L     LE   
Sbjct: 58  DHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDP 117
Query: 655 DWASRYS------------IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIG 702
            +A   S             A  VA+G+ +L   +    +  DL+ RNI         +G
Sbjct: 118 AFAIANSTASTLSSQQLLHFAADVARGMDYL---SQKQFIHRDLAARNIL--------VG 166
Query: 703 DIELCKVIDPSKSTGSLSTVAGSVGYIPPEYA------YTMRVTMAGNVYSFGVILLELL 756
           +  + K+ D   S G    V  ++G +P  +       Y++  T + +V+S+GV+L E++
Sbjct: 167 ENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNS-DVWSYGVLLWEIV 225
Query: 757 T 757
           +
Sbjct: 226 S 226

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 26/255 (10%)
Query: 580 MSYFIKKLNWSDKIFQLGS--HHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYA 637
           + Y++ K   + K  + GS     F +E EV+ KLS+  ++      L      L +E+ 
Sbjct: 45  LGYWLNKDKVAIKTIKEGSMSEDDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM 104
Query: 638 PKGTLFDVLHGCLENALDWASR-YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL 696
             G L D L    +  L  A     + + V +G+A+L       ++  DL+ RN  +   
Sbjct: 105 EHGCLSDYLR--TQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGEN 159
Query: 697 KEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELL 756
           +  ++ D  + + +   + T S  T    V +  PE     R +   +V+SFGV++ E+ 
Sbjct: 160 QVIKVSDFGMTRFVLDDQYTSSTGT-KFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVF 218
Query: 757 T-GKTAVNQGNELAKWVLRNSAQQDKLDHI-LDFNVSRTSLAVRSQMLTVLKVAVACVSV 814
           + GK               N +  + ++ I   F + +  LA       V ++   C   
Sbjct: 219 SEGKIPYE-----------NRSNSEVVEDISTGFRLYKPRLASTH----VYQIMNHCWKE 263
Query: 815 SPEARPKMKSVLRML 829
            PE RP    +LR L
Sbjct: 264 RPEDRPAFSRLLRQL 278

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 95/252 (37%), Gaps = 49/252 (19%)
Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENA-------- 653
           F +E E+L  L + +++      +  D   + +EY   G L   L     +A        
Sbjct: 62  FHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNP 121
Query: 654 ---LDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI 710
              L  +    IA  +A G+ +L    S   +  DL+TRN          +G+  L K+ 
Sbjct: 122 PTELTQSQMLHIAQQIAAGMVYL---ASQHFVHRDLATRNCL--------VGENLLVKIG 170
Query: 711 DPSKSTGSLSTVAGSVG--------YIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTA 761
           D   S    ST    VG        ++PPE     + T   +V+S GV+L E+ T GK  
Sbjct: 171 DFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQP 230
Query: 762 VNQ--GNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEAR 819
             Q   NE+ + + +    Q                  R+    V ++ + C    P  R
Sbjct: 231 WYQLSNNEVIECITQGRVLQRP----------------RTCPQEVYELMLGCWQREPHMR 274
Query: 820 PKMKSVLRMLLN 831
             +K +  +L N
Sbjct: 275 KNIKGIHTLLQN 286

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 23/179 (12%)
Query: 2   QSCGGIDGLKLLNFSKNELVSLPT-FNGFAGLEVLDFSSNNLNGNINLQFDELVXXXXXX 60
           QS  G   LK L+ S N ++++ + F G   LE LDF  +NL      Q  E        
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-----QMSEFSVFLSLR 421
Query: 61  XXXXXXXGFLPINLGKTK-----------ALEELVLSGNAFHGE-IPKGIADYRNLTLID 108
                   +L I+   T+           +LE L ++GN+F    +P    + RNLT +D
Sbjct: 422 NLI-----YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
Query: 109 LSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVP 167
           LS   L    P     LS L+VL +++N L          +T+L +   + N +  S P
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1) Catalytic Domain Length = 317

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 7/159 (4%)
Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY 660
           K   E+ +   L N +V+    +    D  Y+  E   + +L + LH   +   +  +RY
Sbjct: 88  KMSTEIAIHKSLDNPHVVGFHGFFEDDDFVYVVLEICRRRSLLE-LHKRRKAVTEPEARY 146
Query: 661 SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLS 720
            +   + QG+ +LH   +N ++  DL   N+FL    + +IGD  L   I+         
Sbjct: 147 FMRQTI-QGVQYLH---NNRVIHRDLKLGNLFLNDDMDVKIGDFGLATKIEFDGERKK-- 200
Query: 721 TVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
           T+ G+  YI PE       +   +++S G IL  LL GK
Sbjct: 201 TLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGK 239

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 12/154 (7%)
Query: 612 LSNSNVMTPLAY--------VLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           L+ +NVM  L +        V+  +  Y+  E+  KG+L D L     +          +
Sbjct: 58  LAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFS 117
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +A+G+AF+        +  DL   NI + +    +I D  L +VI+ ++ T       
Sbjct: 118 AQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAR-EGAK 173
Query: 724 GSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
             + +  PE       T+  +V+SFG++L+E++T
Sbjct: 174 FPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVT 207

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 17/176 (9%)
Query: 596 LGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENAL- 654
           L +   F +E E+L  L + +++         D   + +EY   G L   L     +A+ 
Sbjct: 58  LAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMI 117
Query: 655 --DWASRYS-----------IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQI 701
             D   R +           IA  +A G+ +L    S   +  DL+TRN  + +    +I
Sbjct: 118 LVDGQPRQAKGELGLSQMLHIASQIASGMVYL---ASQHFVHRDLATRNCLVGANLLVKI 174
Query: 702 GDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
           GD  + + +  +            + ++PPE     + T   +V+SFGVIL E+ T
Sbjct: 175 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFT 230

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 102/253 (40%), Gaps = 22/253 (8%)
Query: 580 MSYFIKKLNWSDKIFQLG--SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYA 637
           + Y++ K   + K  + G  S   F +E EV+ KLS+  ++      L      L +E+ 
Sbjct: 25  LGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM 84
Query: 638 PKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK 697
             G L D L           +   + + V +G+A+L       ++  DL+ RN  +   +
Sbjct: 85  EHGCLSDYLR-TQRGLFAAETLLGMCLDVCEGMAYLE---EASVIHRDLAARNCLVGENQ 140
Query: 698 EPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
             ++ D  + + +   + T S  T    V +  PE     R +   +V+SFGV++ E+ +
Sbjct: 141 VIKVSDFGMTRFVLDDQYTSSTGT-KFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFS 199
Query: 758 GKTAVNQGNELAKWVLRNSAQQDKLDHI-LDFNVSRTSLAVRSQMLTVLKVAVACVSVSP 816
                       K    N +  + ++ I   F + +  LA       V ++   C    P
Sbjct: 200 E----------GKIPYENRSNSEVVEDISTGFRLYKPRLASTH----VYQIMNHCWKERP 245
Query: 817 EARPKMKSVLRML 829
           E RP    +LR L
Sbjct: 246 EDRPAFSRLLRQL 258

>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase Domain Of The Human Epidermal Growth Factor Receptor 3 (Her3) Length = 325

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 19/169 (11%)
Query: 609 LGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLH---GCL--ENALDWASRYSIA 663
           +G L +++++  L     S S  L  +Y P G+L D +    G L  +  L+W       
Sbjct: 69  IGSLDHAHIVRLLGLCPGS-SLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWG------ 121
Query: 664 VGVAQGLAFL--HGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST 721
           V +A+G+ +L  HG         +L+ RN+ LKS  + Q+ D  +  ++ P       S 
Sbjct: 122 VQIAKGMYYLEEHGMVHR-----NLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSE 176
Query: 722 VAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAK 770
               + ++  E  +  + T   +V+S+GV + EL+T       G  LA+
Sbjct: 177 AKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAE 225

>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex With Amp-Pnp Length = 344

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 19/169 (11%)
Query: 609 LGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLH---GCL--ENALDWASRYSIA 663
           +G L +++++  L     S S  L  +Y P G+L D +    G L  +  L+W       
Sbjct: 87  IGSLDHAHIVRLLGLCPGS-SLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWG------ 139
Query: 664 VGVAQGLAFL--HGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST 721
           V +A+G+ +L  HG         +L+ RN+ LKS  + Q+ D  +  ++ P       S 
Sbjct: 140 VQIAKGMYYLEEHGMVHR-----NLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSE 194
Query: 722 VAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAK 770
               + ++  E  +  + T   +V+S+GV + EL+T       G  LA+
Sbjct: 195 AKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAE 243

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 15/182 (8%)
Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL--HGCLENALD 655
           S  K  +E+ ++  L++ N++     +    + YL  EYA  G +FD L  HG ++   +
Sbjct: 54  SLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHGRMKEK-E 112
Query: 656 WASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS 715
             S++   V   Q   + H      I+  DL   N+ L +    +I D       +    
Sbjct: 113 ARSKFRQIVSAVQ---YCH---QKRIVHRDLKAENLLLDADMNIKIADFGFS---NEFTV 163
Query: 716 TGSLSTVAGSVGYIPPEYAYTMRVTMAG-NVYSFGVILLELLTGKTAVNQGN--ELAKWV 772
            G L T  GS  Y  PE     +      +V+S GVIL  L++G    +  N  EL + V
Sbjct: 164 GGKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERV 223
Query: 773 LR 774
           LR
Sbjct: 224 LR 225

>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 19/166 (11%)
Query: 606 LEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHG--------CL------E 651
           ++++GK  + N++  L         Y+  EYA KG L + L          C       E
Sbjct: 72  MKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPE 129
Query: 652 NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
             L      S A  VA+G+ +L    S   +  DL+ RN+ +      +I D  L + I 
Sbjct: 130 EQLSSKDLVSCAYQVARGMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIH 186
Query: 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   +     V ++ PE  +    T   +V+SFGV+L E+ T
Sbjct: 187 HIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 232

>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           KE+ +   L++ NV+    +    +  YLF EY   G LFD +   +      A R+   
Sbjct: 53  KEIXINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQ 112
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +  G+ +LHG     I   D+   N+ L      +I D  L  V   +     L+ + 
Sbjct: 113 --LMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMC 167
Query: 724 GSVGYIPPEYAYTMRVTMAG-NVYSFGVILLELLTGKTAVNQ 764
           G++ Y+ PE            +V+S G++L  +L G+   +Q
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQ 209

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 33/181 (18%)
Query: 598 SHHKFDKELEVLGKLSNS-NVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHG--CLENAL 654
            H  F  ELEVL KL +  N++  L         YL  EYAP G L D L     LE   
Sbjct: 65  DHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDP 124
Query: 655 DWASRYS------------IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIG 702
            +A   S             A  VA+G+ +L   +    +  +L+ RNI         +G
Sbjct: 125 AFAIANSTASTLSSQQLLHFAADVARGMDYL---SQKQFIHRNLAARNIL--------VG 173
Query: 703 DIELCKVIDPSKSTGSLSTVAGSVGYIPPEYA------YTMRVTMAGNVYSFGVILLELL 756
           +  + K+ D   S G    V  ++G +P  +       Y++  T + +V+S+GV+L E++
Sbjct: 174 ENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNS-DVWSYGVLLWEIV 232
Query: 757 T 757
           +
Sbjct: 233 S 233

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 12/154 (7%)
Query: 612 LSNSNVMTPLAY--------VLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           L+ +NVM  L +        V+  +  Y+  E+  KG+L D L     +          +
Sbjct: 231 LAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFS 290
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +A+G+AF+        +  DL   NI + +    +I D  L +VI+ ++ T       
Sbjct: 291 AQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAR-EGAK 346
Query: 724 GSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
             + +  PE       T+  +V+SFG++L+E++T
Sbjct: 347 FPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVT 380

>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           KE+ +   L++ NV+    +    +  YLF EY   G LFD +   +      A R+   
Sbjct: 53  KEIXINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQ 112
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +  G+ +LHG     I   D+   N+ L      +I D  L  V   +     L+ + 
Sbjct: 113 --LMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMX 167
Query: 724 GSVGYIPPEYAYTMRVTMAG-NVYSFGVILLELLTGKTAVNQ 764
           G++ Y+ PE            +V+S G++L  +L G+   +Q
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQ 209

>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 19/166 (11%)
Query: 606 LEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA-------- 657
           ++++GK  + N++  L         Y+  EYA KG L + L       L+++        
Sbjct: 87  MKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEFSFNPSHNPE 144
Query: 658 ------SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
                    S A  VA+G+ +L    S   +  DL+ RN+ +      +I D  L + I 
Sbjct: 145 EQLSSKDLVSCAYQVARGMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIH 201
Query: 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   +     V ++ PE  +    T   +V+SFGV+L E+ T
Sbjct: 202 HIDXXKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 247

>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920 Length = 486

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 20/162 (12%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           +E+E+L KL + N+M     +  S S Y+  E    G LFD +      +   A+R  I 
Sbjct: 70  REVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAAR--II 127
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG-----S 718
             V  G+ ++H    + I+  DL   NI L+S KE    DI   K+ID   ST       
Sbjct: 128 KQVFSGITYMH---KHNIVHRDLKPENILLES-KEKDC-DI---KIIDFGLSTCFQQNTK 179
Query: 719 LSTVAGSVGYIPPEYAYTMRVTM--AGNVYSFGVILLELLTG 758
           +    G+  YI PE    +R T     +V+S GVIL  LL+G
Sbjct: 180 MKDRIGTAYYIAPE---VLRGTYDEKCDVWSAGVILYILLSG 218

>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 19/166 (11%)
Query: 606 LEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHG--------CL------E 651
           ++++GK  + N++  L         Y+  EYA KG L + L          C       E
Sbjct: 87  MKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPE 144
Query: 652 NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
             L      S A  VA+G+ +L    S   +  DL+ RN+ +      +I D  L + I 
Sbjct: 145 EQLSSKDLVSCAYQVARGMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIH 201
Query: 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   +     V ++ PE  +    T   +V+SFGV+L E+ T
Sbjct: 202 HIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 247

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 612 LSNSNVMTPLAY--------VLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           L+ +N+M  L +        V+  +  Y+  EY   G+L D L       L       +A
Sbjct: 56  LAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMA 115
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +A+G+AF+        +  DL   NI +      +I D  L ++I+ ++ T       
Sbjct: 116 AQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAR-EGAK 171
Query: 724 GSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
             + +  PE       T+  +V+SFG++L E++T
Sbjct: 172 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 205

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 612 LSNSNVMTPLAY--------VLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           L+ +N+M  L +        V+  +  Y+  EY   G+L D L       L       +A
Sbjct: 57  LAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMA 116
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +A+G+AF+        +  DL   NI +      +I D  L ++I+ ++ T       
Sbjct: 117 AQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAR-EGAK 172
Query: 724 GSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
             + +  PE       T+  +V+SFG++L E++T
Sbjct: 173 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 206

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 612 LSNSNVMTPLAY--------VLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           L+ +N+M  L +        V+  +  Y+  EY   G+L D L       L       +A
Sbjct: 58  LAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMA 117
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +A+G+AF+        +  DL   NI +      +I D  L ++I+ ++ T       
Sbjct: 118 AQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAR-EGAK 173
Query: 724 GSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
             + +  PE       T+  +V+SFG++L E++T
Sbjct: 174 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 207

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 102/253 (40%), Gaps = 22/253 (8%)
Query: 580 MSYFIKKLNWSDKIFQLG--SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYA 637
           + Y++ K   + K  + G  S   F +E EV+ KLS+  ++      L      L +E+ 
Sbjct: 23  LGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM 82
Query: 638 PKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK 697
             G L D L           +   + + V +G+A+L       ++  DL+ RN  +   +
Sbjct: 83  EHGCLSDYLR-TQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQ 138
Query: 698 EPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
             ++ D  + + +   + T S  T    V +  PE     R +   +V+SFGV++ E+ +
Sbjct: 139 VIKVSDFGMTRFVLDDQYTSSTGT-KFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFS 197
Query: 758 GKTAVNQGNELAKWVLRNSAQQDKLDHI-LDFNVSRTSLAVRSQMLTVLKVAVACVSVSP 816
                       K    N +  + ++ I   F + +  LA       V ++   C    P
Sbjct: 198 E----------GKIPYENRSNSEVVEDISTGFRLYKPRLASTH----VYQIMNHCWKERP 243
Query: 817 EARPKMKSVLRML 829
           E RP    +LR L
Sbjct: 244 EDRPAFSRLLRQL 256

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 102/253 (40%), Gaps = 22/253 (8%)
Query: 580 MSYFIKKLNWSDKIFQLG--SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYA 637
           + Y++ K   + K  + G  S   F +E EV+ KLS+  ++      L      L +E+ 
Sbjct: 25  LGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM 84
Query: 638 PKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK 697
             G L D L           +   + + V +G+A+L       ++  DL+ RN  +   +
Sbjct: 85  EHGCLSDYLR-TQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQ 140
Query: 698 EPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
             ++ D  + + +   + T S  T    V +  PE     R +   +V+SFGV++ E+ +
Sbjct: 141 VIKVSDFGMTRFVLDDQYTSSTGT-KFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFS 199
Query: 758 GKTAVNQGNELAKWVLRNSAQQDKLDHI-LDFNVSRTSLAVRSQMLTVLKVAVACVSVSP 816
                       K    N +  + ++ I   F + +  LA       V ++   C    P
Sbjct: 200 E----------GKIPYENRSNSEVVEDISTGFRLYKPRLASTH----VYQIMNHCWKERP 245
Query: 817 EARPKMKSVLRML 829
           E RP    +LR L
Sbjct: 246 EDRPAFSRLLRQL 258

>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20 Length = 322

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           KE+ +   L++ NV+    +    +  YLF EY   G LFD +   +      A R+   
Sbjct: 53  KEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQ 112
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +  G+ +LHG     I   D+   N+ L      +I D  L  V   +     L+ + 
Sbjct: 113 --LMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMC 167
Query: 724 GSVGYIPPEYAYTMRVTMAG-NVYSFGVILLELLTGKTAVNQ 764
           G++ Y+ PE            +V+S G++L  +L G+   +Q
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQ 209

>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Compound 902 Length = 301

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 7/159 (4%)
Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY 660
           K   E+ +   L N +V+    +    D  Y+  E   + +L + LH   +   +  +RY
Sbjct: 72  KMSTEIAIHKSLDNPHVVGFHGFFEDDDFVYVVLEICRRRSLLE-LHKRRKAVTEPEARY 130
Query: 661 SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLS 720
            +   + QG+ +LH   +N ++  DL   N+FL    + +IGD  L   I+         
Sbjct: 131 FMRQTI-QGVQYLH---NNRVIHRDLKLGNLFLNDDMDVKIGDFGLATKIEFDGERKK-- 184
Query: 721 TVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
            + G+  YI PE       +   +++S G IL  LL GK
Sbjct: 185 DLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGK 223

>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54 Length = 323

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           KE+ +   L++ NV+    +    +  YLF EY   G LFD +   +      A R+   
Sbjct: 54  KEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQ 113
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +  G+ +LHG     I   D+   N+ L      +I D  L  V   +     L+ + 
Sbjct: 114 --LMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMC 168
Query: 724 GSVGYIPPEYAYTMRVTMAG-NVYSFGVILLELLTGKTAVNQ 764
           G++ Y+ PE            +V+S G++L  +L G+   +Q
Sbjct: 169 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQ 210

>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase Domain With 3-(2,6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1- Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398) Length = 382

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 19/166 (11%)
Query: 606 LEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR------ 659
           ++++GK  + N++  L         Y+  EYA KG L + L       L+++        
Sbjct: 128 MKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPE 185
Query: 660 --------YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
                    S A  VA+G+ +L    S   +  DL+ RN+ +      +I D  L + I 
Sbjct: 186 EQLSSKDLVSCAYQVARGMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIH 242
Query: 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   +     V ++ PE  +    T   +V+SFGV+L E+ T
Sbjct: 243 HIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 288

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 102/253 (40%), Gaps = 22/253 (8%)
Query: 580 MSYFIKKLNWSDKIFQLG--SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYA 637
           + Y++ K   + K  + G  S   F +E EV+ KLS+  ++      L      L +E+ 
Sbjct: 28  LGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM 87
Query: 638 PKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK 697
             G L D L           +   + + V +G+A+L       ++  DL+ RN  +   +
Sbjct: 88  EHGCLSDYLR-TQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQ 143
Query: 698 EPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
             ++ D  + + +   + T S  T    V +  PE     R +   +V+SFGV++ E+ +
Sbjct: 144 VIKVSDFGMTRFVLDDQYTSSTGT-KFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFS 202
Query: 758 GKTAVNQGNELAKWVLRNSAQQDKLDHI-LDFNVSRTSLAVRSQMLTVLKVAVACVSVSP 816
                       K    N +  + ++ I   F + +  LA       V ++   C    P
Sbjct: 203 E----------GKIPYENRSNSEVVEDISTGFRLYKPRLASTH----VYQIMNHCWRERP 248
Query: 817 EARPKMKSVLRML 829
           E RP    +LR L
Sbjct: 249 EDRPAFSRLLRQL 261

>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           KE+ +   L++ NV+    +    +  YLF EY   G LFD +   +      A R+   
Sbjct: 53  KEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQ 112
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +  G+ +LHG     I   D+   N+ L      +I D  L  V   +     L+ + 
Sbjct: 113 --LMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMC 167
Query: 724 GSVGYIPPEYAYTMRVTMAG-NVYSFGVILLELLTGKTAVNQ 764
           G++ Y+ PE            +V+S G++L  +L G+   +Q
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQ 209

>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor Receptor 1 Kinase Domain In Complex With Compound 1 Length = 309

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 19/166 (11%)
Query: 606 LEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR------ 659
           ++++GK  + N++  L         Y+  EYA KG L + L       L+++        
Sbjct: 79  MKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPE 136
Query: 660 --------YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
                    S A  VA+G+ +L    S   +  DL+ RN+ +      +I D  L + I 
Sbjct: 137 EQLSSKDLVSCAYQVARGMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIH 193
Query: 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   +     V ++ PE  +    T   +V+SFGV+L E+ T
Sbjct: 194 HIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 239

>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase In Complex With Arq 069 Length = 306

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 19/166 (11%)
Query: 606 LEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR------ 659
           ++++GK  + N++  L         Y+  EYA KG L + L       L+++        
Sbjct: 76  MKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPE 133
Query: 660 --------YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
                    S A  VA+G+ +L    S   +  DL+ RN+ +      +I D  L + I 
Sbjct: 134 EQLSSKDLVSCAYQVARGMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIH 190
Query: 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   +     V ++ PE  +    T   +V+SFGV+L E+ T
Sbjct: 191 HIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 236

>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1 Length = 278

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           KE+ +   L++ NV+    +    +  YLF EY   G LFD +   +      A R+   
Sbjct: 52  KEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQ 111
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +  G+ +LHG     I   D+   N+ L      +I D  L  V   +     L+ + 
Sbjct: 112 --LMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMC 166
Query: 724 GSVGYIPPEYAYTMRVTMAG-NVYSFGVILLELLTGKTAVNQ 764
           G++ Y+ PE            +V+S G++L  +L G+   +Q
Sbjct: 167 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQ 208

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 69/166 (41%), Gaps = 13/166 (7%)
Query: 597 GSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFD-VLHGCLENALD 655
           G     + E+ VL K+ + N++       +    YL  +    G LFD ++        D
Sbjct: 58  GKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERD 117
Query: 656 WASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQ---IGDIELCKVIDP 712
            ASR  +   V   + +LH      I+  DL   N+   SL E     I D  L K+ DP
Sbjct: 118 -ASR--LIFQVLDAVKYLHDLG---IVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDP 171
Query: 713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTG 758
                 LST  G+ GY+ PE       + A + +S GVI   LL G
Sbjct: 172 G---SVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCG 214

>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast Growth Factor Receptor 1 In Complex With 5-(2-Thienyl) Nicotinic Acid Length = 317

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 19/166 (11%)
Query: 606 LEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR------ 659
           ++++GK  + N++  L         Y+  EYA KG L + L       L+++        
Sbjct: 87  MKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPE 144
Query: 660 --------YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
                    S A  VA+G+ +L    S   +  DL+ RN+ +      +I D  L + I 
Sbjct: 145 EQLSSKDLVSCAYQVARGMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIH 201
Query: 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   +     V ++ PE  +    T   +V+SFGV+L E+ T
Sbjct: 202 HIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 247

>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights Into Hydrogen Bonding And Protein-Ligand Affinity Length = 297

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           KE+ +   L++ NV+    +    +  YLF EY   G LFD +   +      A R+   
Sbjct: 54  KEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQ 113
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +  G+ +LHG     I   D+   N+ L      +I D  L  V   +     L+ + 
Sbjct: 114 --LMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMC 168
Query: 724 GSVGYIPPEYAYTMRVTMAG-NVYSFGVILLELLTGKTAVNQ 764
           G++ Y+ PE            +V+S G++L  +L G+   +Q
Sbjct: 169 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQ 210

>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint Kinase Chk1 Length = 289

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           KE+ +   L++ NV+    +    +  YLF EY   G LFD +   +      A R+   
Sbjct: 54  KEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQ 113
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +  G+ +LHG     I   D+   N+ L      +I D  L  V   +     L+ + 
Sbjct: 114 --LMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMC 168
Query: 724 GSVGYIPPEYAYTMRVTMAG-NVYSFGVILLELLTGKTAVNQ 764
           G++ Y+ PE            +V+S G++L  +L G+   +Q
Sbjct: 169 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQ 210

>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine Analog Length = 295

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           KE+ +   L++ NV+    +    +  YLF EY   G LFD +   +      A R+   
Sbjct: 54  KEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQ 113
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +  G+ +LHG     I   D+   N+ L      +I D  L  V   +     L+ + 
Sbjct: 114 --LMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMC 168
Query: 724 GSVGYIPPEYAYTMRVTMAG-NVYSFGVILLELLTGKTAVNQ 764
           G++ Y+ PE            +V+S G++L  +L G+   +Q
Sbjct: 169 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQ 210

>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           KE+ +   L++ NV+    +    +  YLF EY   G LFD +   +      A R+   
Sbjct: 53  KEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQ 112
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +  G+ +LHG     I   D+   N+ L      +I D  L  V   +     L+ + 
Sbjct: 113 --LMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMC 167
Query: 724 GSVGYIPPEYAYTMRVTMAG-NVYSFGVILLELLTGKTAVNQ 764
           G++ Y+ PE            +V+S G++L  +L G+   +Q
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQ 209

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 71/167 (42%), Gaps = 15/167 (8%)
Query: 597 GSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFD-VLHGCLENALD 655
           G     + E+ VL K+ + N++       +    YL  +    G LFD ++        D
Sbjct: 58  GKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERD 117
Query: 656 WASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQ---IGDIELCKVIDP 712
            ASR  +   V   + +LH      I+  DL   N+   SL E     I D  L K+ DP
Sbjct: 118 -ASR--LIFQVLDAVKYLHDLG---IVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDP 171
Query: 713 SKSTGS-LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTG 758
               GS LST  G+ GY+ PE       + A + +S GVI   LL G
Sbjct: 172 ----GSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCG 214

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 612 LSNSNVMTPLAY--------VLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           L+ +N+M  L +        V+  +  Y+  EY   G+L D L       L       +A
Sbjct: 62  LAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMA 121
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +A+G+AF+        +  DL   NI +      +I D  L ++I+ ++ T       
Sbjct: 122 AQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAR-EGAK 177
Query: 724 GSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
             + +  PE       T+  +V+SFG++L E++T
Sbjct: 178 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 211

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 612 LSNSNVMTPLAY--------VLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           L+ +N+M  L +        V+  +  Y+  EY   G+L D L       L       +A
Sbjct: 56  LAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMA 115
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +A+G+AF+        +  DL   NI +      +I D  L ++I+ ++ T       
Sbjct: 116 AQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAR-EGAK 171
Query: 724 GSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
             + +  PE       T+  +V+SFG++L E++T
Sbjct: 172 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 205

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 612 LSNSNVMTPLAY--------VLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           L+ +N+M  L +        V+  +  Y+  EY   G+L D L       L       +A
Sbjct: 51  LAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMA 110
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +A+G+AF+        +  DL   NI +      +I D  L ++I+ ++ T       
Sbjct: 111 AQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAR-EGAK 166
Query: 724 GSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
             + +  PE       T+  +V+SFG++L E++T
Sbjct: 167 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 200

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 612 LSNSNVMTPLAY--------VLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           L+ +N+M  L +        V+  +  Y+  EY   G+L D L       L       +A
Sbjct: 61  LAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMA 120
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +A+G+AF+        +  DL   NI +      +I D  L ++I+ ++ T       
Sbjct: 121 AQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAR-EGAK 176
Query: 724 GSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
             + +  PE       T+  +V+SFG++L E++T
Sbjct: 177 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 210

>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent Protein Kinase Cgd3_920 From Cryptosporidium Parvum Length = 286

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           +E+E+L KL + N+M     +  S S Y+  E    G LFD +      +   A+R  I 
Sbjct: 70  REVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAAR--II 127
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG-----S 718
             V  G+ ++H    + I+  DL   NI L+S KE    DI   K+ID   ST       
Sbjct: 128 KQVFSGITYMH---KHNIVHRDLKPENILLES-KEKDC-DI---KIIDFGLSTCFQQNTK 179
Query: 719 LSTVAGSVGYIPPEYAYTMRVTM--AGNVYSFGVILLELLTGKTAVNQGNE 767
           +    G+  YI PE    +R T     +V+S GVIL  LL+G       NE
Sbjct: 180 MKDRIGTAYYIAPE---VLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNE 227

>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fibroblast Growth Factor Receptor 1 Length = 310

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 19/166 (11%)
Query: 606 LEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR------ 659
           ++++GK  + N++  L         Y+  EYA KG L + L       L+++        
Sbjct: 80  MKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPE 137
Query: 660 --------YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
                    S A  VA+G+ +L    S   +  DL+ RN+ +      +I D  L + I 
Sbjct: 138 EQLSSKDLVSCAYQVARGMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIH 194
Query: 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   +     V ++ PE  +    T   +V+SFGV+L E+ T
Sbjct: 195 HIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 240

>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           KE+ +   L++ NV+    +    +  YLF EY   G LFD +   +      A R+   
Sbjct: 53  KEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQ 112
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +  G+ +LHG     I   D+   N+ L      +I D  L  V   +     L+ + 
Sbjct: 113 --LMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMX 167
Query: 724 GSVGYIPPEYAYTMRVTMAG-NVYSFGVILLELLTGKTAVNQ 764
           G++ Y+ PE            +V+S G++L  +L G+   +Q
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQ 209

>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Adp Length = 317

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 7/159 (4%)
Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY 660
           K   E+ +   L N +V+    +    D  Y+  E   + +L + LH   +   +  +RY
Sbjct: 88  KMSTEIAIHKSLDNPHVVGFHGFFEDDDFVYVVLEICRRRSLLE-LHKRRKAVTEPEARY 146
Query: 661 SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLS 720
            +   + QG+ +LH   +N ++  DL   N+FL    + +IGD  L   I+         
Sbjct: 147 FMRQTI-QGVQYLH---NNRVIHRDLKLGNLFLNDDMDVKIGDFGLATKIEFDGERKK-- 200
Query: 721 TVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
            + G+  YI PE       +   +++S G IL  LL GK
Sbjct: 201 XLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGK 239

>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium Parvum Calcium Dependent Protein Kinase In Complex With 3- Mb-Pp1 Length = 287

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           +E+E+L KL + N+M     +  S S Y+  E    G LFD +      +   A+R  I 
Sbjct: 70  REVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAAR--II 127
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG-----S 718
             V  G+ ++H    + I+  DL   NI L+S KE    DI   K+ID   ST       
Sbjct: 128 KQVFSGITYMH---KHNIVHRDLKPENILLES-KEKDC-DI---KIIDFGLSTCFQQNTK 179
Query: 719 LSTVAGSVGYIPPEYAYTMRVTM--AGNVYSFGVILLELLTGKTAVNQGNE 767
           +    G+  YI PE    +R T     +V+S GVIL  LL+G       NE
Sbjct: 180 MKDRIGTAYYIAPE---VLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNE 227

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 71/167 (42%), Gaps = 15/167 (8%)
Query: 597 GSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFD-VLHGCLENALD 655
           G     + E+ VL K+ + N++       +    YL  +    G LFD ++        D
Sbjct: 58  GKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERD 117
Query: 656 WASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQ---IGDIELCKVIDP 712
            ASR  +   V   + +LH      I+  DL   N+   SL E     I D  L K+ DP
Sbjct: 118 -ASR--LIFQVLDAVKYLHDLG---IVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDP 171
Query: 713 SKSTGS-LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTG 758
               GS LST  G+ GY+ PE       + A + +S GVI   LL G
Sbjct: 172 ----GSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCG 214

>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain. Length = 317

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 7/159 (4%)
Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY 660
           K   E+ +   L N +V+    +    D  Y+  E   + +L + LH   +   +  +RY
Sbjct: 88  KMSTEIAIHKSLDNPHVVGFHGFFEDDDFVYVVLEICRRRSLLE-LHKRRKAVTEPEARY 146
Query: 661 SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLS 720
            +   + QG+ +LH   +N ++  DL   N+FL    + +IGD  L   I+         
Sbjct: 147 FMRQTI-QGVQYLH---NNRVIHRDLKLGNLFLNDDMDVKIGDFGLATKIEFDGERKK-- 200
Query: 721 TVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
            + G+  YI PE       +   +++S G IL  LL GK
Sbjct: 201 DLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGK 239

>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor 1 Length = 317

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 19/166 (11%)
Query: 606 LEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR------ 659
           ++++GK  + N++  L         Y+  EYA KG L + L       L+++        
Sbjct: 87  MKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQAREPPGLEYSYNPSHNPE 144
Query: 660 --------YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
                    S A  VA+G+ +L    S   +  DL+ RN+ +      +I D  L + I 
Sbjct: 145 EQLSSKDLVSCAYQVARGMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIH 201
Query: 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   +     V ++ PE  +    T   +V+SFGV+L E+ T
Sbjct: 202 HIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 247

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 75  GKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILS 134
           G  + + EL L GN F   +PK +++Y++LTLIDLS N +S         +++L  LILS
Sbjct: 28  GIPRDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86
Query: 135 ANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGG 169
            N L    P +   + +L   + + N  S  VP G
Sbjct: 87  YNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEG 120

>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           KE+ +   L++ NV+    +    +  YLF EY   G LFD +   +      A R+   
Sbjct: 53  KEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQ 112
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +  G+ +LHG     I   D+   N+ L      +I D  L  V   +     L+ + 
Sbjct: 113 --LMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMX 167
Query: 724 GSVGYIPPEYAYTMRVTMAG-NVYSFGVILLELLTGKTAVNQ 764
           G++ Y+ PE            +V+S G++L  +L G+   +Q
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQ 209

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 69/166 (41%), Gaps = 13/166 (7%)
Query: 597 GSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFD-VLHGCLENALD 655
           G     + E+ VL K+ + N++       +    YL  +    G LFD ++        D
Sbjct: 58  GKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERD 117
Query: 656 WASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQ---IGDIELCKVIDP 712
            ASR  +   V   + +LH      I+  DL   N+   SL E     I D  L K+ DP
Sbjct: 118 -ASR--LIFQVLDAVKYLHDLG---IVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDP 171
Query: 713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTG 758
                 LST  G+ GY+ PE       + A + +S GVI   LL G
Sbjct: 172 G---SVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCG 214

>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 7/159 (4%)
Query: 602 FDKELEVLGKLSNSNVMT--PLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
           F +E+++L  L +  ++    ++Y     S  L  EY P G L D L       LD +  
Sbjct: 58  FQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQR-HRARLDASRL 116
Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
              +  + +G+ +L    S   +  DL+ RNI ++S    +I D  L K++   K    +
Sbjct: 117 LLYSSQICKGMEYL---GSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVV 173
Query: 720 STVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                S + +  PE       +   +V+SFGV+L EL T
Sbjct: 174 REPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFT 212

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 94/217 (43%), Gaps = 46/217 (21%)
Query: 101 YRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQN 160
           + NLT++DLS NNL+    D    L +LE   L  NN+                    Q+
Sbjct: 252 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI--------------------QH 291
Query: 161 KFSGSVPGGITRFLRNLDLSYNK----LLGVIPIDLLSHPNLQTIDLSVNMLEGSLP--- 213
            FS S+ G       NL  S+ K    L  +  ID  S   L+ ++  +NM +  +P   
Sbjct: 292 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE-HLNMEDNDIPGIK 350
Query: 214 QNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLN 273
            NM   L+ L+  +        S +FTSL  LT     N +F  +      +   L +LN
Sbjct: 351 SNMFTGLINLKYLS-------LSNSFTSLRTLT-----NETFVSL------AHSPLHILN 392
Query: 274 LAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQ 310
           L +N+++         LG L+V++L LN++  E+  Q
Sbjct: 393 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 429

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 94/217 (43%), Gaps = 46/217 (21%)
Query: 101 YRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQN 160
           + NLT++DLS NNL+    D    L +LE   L  NN+                    Q+
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI--------------------QH 286
Query: 161 KFSGSVPGGITRFLRNLDLSYNK----LLGVIPIDLLSHPNLQTIDLSVNMLEGSLP--- 213
            FS S+ G       NL  S+ K    L  +  ID  S   L+ ++  +NM +  +P   
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE-HLNMEDNDIPGIK 345
Query: 214 QNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLN 273
            NM   L+ L+  +        S +FTSL  LT     N +F  +      +   L +LN
Sbjct: 346 SNMFTGLINLKYLS-------LSNSFTSLRTLT-----NETFVSL------AHSPLHILN 387
Query: 274 LAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQ 310
           L +N+++         LG L+V++L LN++  E+  Q
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 7/159 (4%)
Query: 602 FDKELEVLGKLSNSNVMT--PLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
           F +E+++L  L +  ++    ++Y     S  L  EY P G L D L       LD +  
Sbjct: 59  FQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQR-HRARLDASRL 117
Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
              +  + +G+ +L    S   +  DL+ RNI ++S    +I D  L K++   K    +
Sbjct: 118 LLYSSQICKGMEYL---GSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVV 174
Query: 720 STVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                S + +  PE       +   +V+SFGV+L EL T
Sbjct: 175 REPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFT 213

>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 7/159 (4%)
Query: 602 FDKELEVLGKLSNSNVMT--PLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
           F +E+++L  L +  ++    ++Y     S  L  EY P G L D L       LD +  
Sbjct: 71  FQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQR-HRARLDASRL 129
Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
              +  + +G+ +L    S   +  DL+ RNI ++S    +I D  L K++   K    +
Sbjct: 130 LLYSSQICKGMEYL---GSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVV 186
Query: 720 STVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                S + +  PE       +   +V+SFGV+L EL T
Sbjct: 187 REPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFT 225

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 94/217 (43%), Gaps = 46/217 (21%)
Query: 101 YRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQN 160
           + NLT++DLS NNL+    D    L +LE   L  NN+                    Q+
Sbjct: 257 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI--------------------QH 296
Query: 161 KFSGSVPGGITRFLRNLDLSYNK----LLGVIPIDLLSHPNLQTIDLSVNMLEGSLP--- 213
            FS S+ G       NL  S+ K    L  +  ID  S   L+ ++  +NM +  +P   
Sbjct: 297 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE-HLNMEDNDIPGIK 355
Query: 214 QNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLN 273
            NM   L+ L+  +        S +FTSL  LT     N +F  +      +   L +LN
Sbjct: 356 SNMFTGLINLKYLS-------LSNSFTSLRTLT-----NETFVSL------AHSPLHILN 397
Query: 274 LAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQ 310
           L +N+++         LG L+V++L LN++  E+  Q
Sbjct: 398 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 434

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 612 LSNSNVMTPLAY--------VLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           L+ +N+M  L +        V+  +  Y+  EY   G+L D L       L       +A
Sbjct: 65  LAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMA 124
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +A+G+AF+        +  DL   NI +      +I D  L ++I+ ++ T       
Sbjct: 125 AQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAR-EGAK 180
Query: 724 GSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
             + +  PE       T+  +V+SFG++L E++T
Sbjct: 181 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 214

>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain Length = 332

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 26/143 (18%)
Query: 637 APKGTLFDVLHGCL-ENALDWASRYS------------IAVGVAQGLAFLHGFTSNPILL 683
           +PK  L+  +  C  EN  DW +R              I + +A+ + FLH   S  ++ 
Sbjct: 131 SPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLH---SKGLMH 187
Query: 684 LDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL-------STVAGSVG---YIPPEY 733
            DL   NIF       ++GD  L   +D  +   ++       +T  G VG   Y+ PE 
Sbjct: 188 RDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHXGQVGTKLYMSPEQ 247
Query: 734 AYTMRVTMAGNVYSFGVILLELL 756
            +    +   +++S G+IL ELL
Sbjct: 248 IHGNNYSHKVDIFSLGLILFELL 270

>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine Length = 353

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 63/164 (38%), Gaps = 8/164 (4%)
Query: 605 ELEVLGKLSNSNVMTPLAYVLAS-DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           E  +L    N   +T L     + D  +   E+   G L  + H       D A     A
Sbjct: 73  EKRILSLARNHPFLTQLFCCFQTPDRLFFVMEFVNGGDL--MFHIQKSRRFDEARARFYA 130
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +   L FLH      I+  DL   N+ L      ++ D  +CK  +   +  + +T  
Sbjct: 131 AEIISALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCK--EGICNGVTTATFC 185
Query: 724 GSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE 767
           G+  YI PE    M    A + ++ GV+L E+L G       NE
Sbjct: 186 GTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENE 229

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 612 LSNSNVMTPLAY--------VLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           L+ +N+M  L +        V+  +  Y+  EY   G+L D L       L       +A
Sbjct: 56  LAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMA 115
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +A+G+AF+        +  DL   NI +      +I D  L ++I+ ++ T       
Sbjct: 116 AQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDAEXTAR-EGAK 171
Query: 724 GSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
             + +  PE       T+  +V+SFG++L E++T
Sbjct: 172 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 205

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 612 LSNSNVMTPLAY--------VLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           L+ +N+M  L +        V+  +  Y+  EY   G+L D L       L       +A
Sbjct: 64  LAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMA 123
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +A+G+AF+        +  DL   NI +      +I D  L ++I+ ++ T       
Sbjct: 124 AQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAR-EGAK 179
Query: 724 GSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
             + +  PE       T+  +V+SFG++L E++T
Sbjct: 180 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 213

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 612 LSNSNVMTPLAY--------VLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           L+ +N+M  L +        V+  +  Y+  EY   G+L D L       L       +A
Sbjct: 56  LAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMA 115
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +A+G+AF+        +  DL   NI +      +I D  L ++I+ ++ T       
Sbjct: 116 AQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAR-EGAK 171
Query: 724 GSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
             + +  PE       T+  +V+SFG++L E++T
Sbjct: 172 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 205

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 612 LSNSNVMTPLAY--------VLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           L+ +N+M  L +        V+  +  Y+  EY   G+L D L       L       +A
Sbjct: 62  LAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMA 121
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +A+G+AF+        +  DL   NI +      +I D  L ++I+ ++ T       
Sbjct: 122 AQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAR-EGAK 177
Query: 724 GSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
             + +  PE       T+  +V+SFG++L E++T
Sbjct: 178 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 211

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 91/200 (45%), Gaps = 23/200 (11%)
Query: 568 FSTYYKAV-MPSG----MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLA 622
           F T YK + +P G    +   IK LN   +     ++ +F  E  ++  + + +++  L 
Sbjct: 51  FGTVYKGIWVPEGETVKIPVAIKILN---ETTGPKANVEFMDEALIMASMDHPHLVRLLG 107
Query: 623 YVLASDSAYLFYEYAPKGTLFDVLHGCLENA-----LDWASRYSIAVGVAQGLAFLHGFT 677
             L S +  L  +  P G L + +H   +N      L+W       V +A+G+ +L    
Sbjct: 108 VCL-SPTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWC------VQIAKGMMYLE--- 157
Query: 678 SNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTM 737
              ++  DL+ RN+ +KS    +I D  L ++++  +   +       + ++  E  +  
Sbjct: 158 ERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYR 217
Query: 738 RVTMAGNVYSFGVILLELLT 757
           + T   +V+S+GV + EL+T
Sbjct: 218 KFTHQSDVWSYGVTIWELMT 237

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 75/162 (46%), Gaps = 15/162 (9%)
Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENA-----LD 655
           +F  E  ++  + + +++  L   L S +  L  +  P G L + +H   +N      L+
Sbjct: 63  EFMDEALIMASMDHPHLVRLLGVCL-SPTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLN 121
Query: 656 WASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS 715
           W       V +A+G+ +L       ++  DL+ RN+ +KS    +I D  L ++++  + 
Sbjct: 122 WC------VQIAKGMMYLE---ERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEK 172
Query: 716 TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
             +       + ++  E  +  + T   +V+S+GV + EL+T
Sbjct: 173 EYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMT 214

>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092, Delete A660- T867) At 2.28 A Resolution Length = 299

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 85/199 (42%), Gaps = 29/199 (14%)
Query: 581 SYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKG 640
           +Y IK++   ++     +  K  +E++ L KL +  ++      L  ++       +PK 
Sbjct: 32  NYAIKRIRLPNREL---AREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKV 88
Query: 641 TLFDVLHGCL-ENALDWAS-RYSIA-----------VGVAQGLAFLHGFTSNPILLLDLS 687
            L+  +  C  EN  DW + R +I            + +A+ + FLH   S  ++  DL 
Sbjct: 89  YLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLH---SKGLMHRDLK 145
Query: 688 TRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV-------AGSVG---YIPPEYAYTM 737
             NIF       ++GD  L   +D  +   ++ T         G VG   Y+ PE  +  
Sbjct: 146 PSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGN 205
Query: 738 RVTMAGNVYSFGVILLELL 756
             +   +++S G+IL ELL
Sbjct: 206 SYSHKVDIFSLGLILFELL 224

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 76/199 (38%), Gaps = 29/199 (14%)
Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL--HG------- 648
           +   F +E E+L  L + +++             + +EY   G L   L  HG       
Sbjct: 63  ARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLA 122
Query: 649 ----CLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDI 704
                    L      ++A  VA G+ +L G      +  DL+TRN  +      +IGD 
Sbjct: 123 GGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLVVKIGDF 179
Query: 705 ELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKT--- 760
            + + I  +            + ++PPE     + T   +V+SFGV+L E+ T GK    
Sbjct: 180 GMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWY 239
Query: 761 ---------AVNQGNELAK 770
                     + QG EL +
Sbjct: 240 QLSNTEAIDCITQGRELER 258

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 612 LSNSNVMTPLAY--------VLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           L+ +N+M  L +        V+  +  Y+  EY   G+L D L       L       +A
Sbjct: 66  LAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMA 125
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +A+G+AF+        +  DL   NI +      +I D  L ++I+ ++ T       
Sbjct: 126 AQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAR-EGAK 181
Query: 724 GSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
             + +  PE       T+  +V+SFG++L E++T
Sbjct: 182 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 215

>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric Inhibitor Length = 446

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 8/157 (5%)
Query: 613 SNSNVMTPLAYVLASDSAYLF-YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLA 671
           S    +T L Y   +     F  EYA  G LF   H   E              +   L 
Sbjct: 208 SRHPFLTALKYSFQTHDRLCFVMEYANGGELF--FHLSRERVFSEDRARFYGAEIVSALD 265
Query: 672 FLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPP 731
           +LH  +   ++  DL   N+ L      +I D  LCK  +  K   ++ T  G+  Y+ P
Sbjct: 266 YLH--SEKNVVYRDLKLENLMLDKDGHIKITDFGLCK--EGIKDGATMKTFCGTPEYLAP 321
Query: 732 EYAYTMRVTMAGNVYSFGVILLELLTGKTA-VNQGNE 767
           E         A + +  GV++ E++ G+    NQ +E
Sbjct: 322 EVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE 358

>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By Structure Based Design And Optimization Of Thiophene Carboxamide Ureas Length = 276

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           KE+ +   L++ NV+    +    +  YLF EY   G LFD +   +      A R+   
Sbjct: 54  KEIXINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQ 113
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +  G+ +LHG     I   D+   N+ L      +I D  L  V   +     L+ + 
Sbjct: 114 --LMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMX 168
Query: 724 GSVGYIPPEYAYTMRVTMAG-NVYSFGVILLELLTGKTAVNQ 764
           G++ Y+ PE            +V+S G++L  +L G+   +Q
Sbjct: 169 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQ 210

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 76/199 (38%), Gaps = 29/199 (14%)
Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL--HG------- 648
           +   F +E E+L  L + +++             + +EY   G L   L  HG       
Sbjct: 57  ARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLA 116
Query: 649 ----CLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDI 704
                    L      ++A  VA G+ +L G      +  DL+TRN  +      +IGD 
Sbjct: 117 GGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLVVKIGDF 173
Query: 705 ELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKT--- 760
            + + I  +            + ++PPE     + T   +V+SFGV+L E+ T GK    
Sbjct: 174 GMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWY 233
Query: 761 ---------AVNQGNELAK 770
                     + QG EL +
Sbjct: 234 QLSNTEAIDCITQGRELER 252

>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex With A Staurosporine Analogue Length = 290

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 7/159 (4%)
Query: 602 FDKELEVLGKLSNSNVMT--PLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
           F +E+++L  L +  ++    ++Y        L  EY P G L D L       LD +  
Sbjct: 55  FQREIQILKALHSDFIVKYRGVSYGPGRPELRLVMEYLPSGCLRDFLQR-HRARLDASRL 113
Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
              +  + +G+ +L    S   +  DL+ RNI ++S    +I D  L K++   K    +
Sbjct: 114 LLYSSQICKGMEYL---GSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDXXVV 170
Query: 720 STVAGS-VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                S + +  PE       +   +V+SFGV+L EL T
Sbjct: 171 REPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFT 209

>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex With N-(4- (5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h- Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide Length = 446

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 8/157 (5%)
Query: 613 SNSNVMTPLAYVLASDSAYLF-YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLA 671
           S    +T L Y   +     F  EYA  G LF   H   E              +   L 
Sbjct: 205 SRHPFLTALKYSFQTHDRLCFVMEYANGGELF--FHLSRERVFSEDRARFYGAEIVSALD 262
Query: 672 FLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPP 731
           +LH  +   ++  DL   N+ L      +I D  LCK  +  K   ++ T  G+  Y+ P
Sbjct: 263 YLH--SEKNVVYRDLKLENLMLDKDGHIKITDFGLCK--EGIKDGATMKTFCGTPEYLAP 318
Query: 732 EYAYTMRVTMAGNVYSFGVILLELLTGKTA-VNQGNE 767
           E         A + +  GV++ E++ G+    NQ +E
Sbjct: 319 EVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE 355

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 101/253 (39%), Gaps = 22/253 (8%)
Query: 580 MSYFIKKLNWSDKIFQLG--SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYA 637
           + Y++ K   + K  + G  S   F +E EV+ KLS+  ++      L      L  E+ 
Sbjct: 26  LGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFM 85
Query: 638 PKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK 697
             G L D L           +   + + V +G+A+L       ++  DL+ RN  +   +
Sbjct: 86  EHGCLSDYLR-TQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQ 141
Query: 698 EPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
             ++ D  + + +   + T S  T    V +  PE     R +   +V+SFGV++ E+ +
Sbjct: 142 VIKVSDFGMTRFVLDDQYTSSTGT-KFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFS 200
Query: 758 GKTAVNQGNELAKWVLRNSAQQDKLDHI-LDFNVSRTSLAVRSQMLTVLKVAVACVSVSP 816
                       K    N +  + ++ I   F + +  LA       V ++   C    P
Sbjct: 201 E----------GKIPYENRSNSEVVEDISTGFRLYKPRLASTH----VYQIMNHCWRERP 246
Query: 817 EARPKMKSVLRML 829
           E RP    +LR L
Sbjct: 247 EDRPAFSRLLRQL 259

>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2 (Erbb2). Length = 338

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 92/200 (46%), Gaps = 23/200 (11%)
Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKEL----EVLGKLSNSNVMTPLA 622
           F T YK + +P G +    K+  + K+ +  +  K +KE+     V+  + +  V   L 
Sbjct: 30  FGTVYKGIWIPDGENV---KIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVSRLLG 86
Query: 623 YVLASDSAYLFYEYAPKGTLFDVLH---GCL--ENALDWASRYSIAVGVAQGLAFLHGFT 677
             L S +  L  +  P G L D +    G L  ++ L+W  +      +A+G+++L    
Sbjct: 87  ICLTS-TVQLVTQLMPYGCLLDHVRENRGRLGSQDLLNWCMQ------IAKGMSYLEDVR 139
Query: 678 SNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTM 737
              ++  DL+ RN+ +KS    +I D  L +++D  ++          + ++  E     
Sbjct: 140 ---LVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILRR 196
Query: 738 RVTMAGNVYSFGVILLELLT 757
           R T   +V+S+GV + EL+T
Sbjct: 197 RFTHQSDVWSYGVTVWELMT 216

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 76/199 (38%), Gaps = 29/199 (14%)
Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL--HG------- 648
           +   F +E E+L  L + +++             + +EY   G L   L  HG       
Sbjct: 86  ARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLA 145
Query: 649 ----CLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDI 704
                    L      ++A  VA G+ +L G      +  DL+TRN  +      +IGD 
Sbjct: 146 GGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLVVKIGDF 202
Query: 705 ELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKT--- 760
            + + I  +            + ++PPE     + T   +V+SFGV+L E+ T GK    
Sbjct: 203 GMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWY 262
Query: 761 ---------AVNQGNELAK 770
                     + QG EL +
Sbjct: 263 QLSNTEAIDCITQGRELER 281

>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid- Regulated Kinase 1 In Complex With Amp-Pnp Length = 373

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 22/163 (13%)
Query: 627 SDSAYLFYEYAPKGTLFDVLHG--CLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLL 684
           +D  Y   +Y   G LF  L    C    L+  +R+  A  +A  L +LH      I+  
Sbjct: 111 ADKLYFVLDYINGGELFYHLQRERCF---LEPRARF-YAAEIASALGYLHSLN---IVYR 163
Query: 685 DLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGN 744
           DL   NI L S     + D  LCK  +  +   + ST  G+  Y+ PE  +        +
Sbjct: 164 DLKPENILLDSQGHIVLTDFGLCK--ENIEHNSTTSTFCGTPEYLAPEVLHKQPYDRTVD 221
Query: 745 VYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD 787
            +  G +L E+L G         L  +  RN+A+    D+IL+
Sbjct: 222 WWCLGAVLYEMLYG---------LPPFYSRNTAEM--YDNILN 253

>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549t Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 19/166 (11%)
Query: 606 LEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHG--------------CLE 651
           ++++GK  + N++T L         Y+  EYA KG L + L                  E
Sbjct: 94  MKMIGK--HKNIITLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPE 151
Query: 652 NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
             + +    S    +A+G+ +L    S   +  DL+ RN+ +      +I D  L + I+
Sbjct: 152 EQMTFKDLVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDIN 208
Query: 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   +     V ++ PE  +    T   +V+SFGV++ E+ T
Sbjct: 209 NIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFT 254

>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase I G Length = 304

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 14/160 (8%)
Query: 603 DKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSI 662
           + E+ VL K+ + N++T      ++   YL  +    G LFD +   LE  +      S+
Sbjct: 54  ENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRI---LERGVYTEKDASL 110
Query: 663 AVG-VAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQ---IGDIELCKVIDPSKSTGS 718
            +  V   + +LH    N I+  DL   N+   + +E     I D  L K+    +  G 
Sbjct: 111 VIQQVLSAVKYLH---ENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKM----EQNGI 163
Query: 719 LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTG 758
           +ST  G+ GY+ PE       + A + +S GVI   LL G
Sbjct: 164 MSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCG 203

>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A Resolution Length = 336

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 22/161 (13%)
Query: 632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLH-----GFTSNP-ILLLD 685
           L  EY P G+L   L     +  DW S   +A  V +GLA+LH     G    P I   D
Sbjct: 89  LVMEYYPNGSLXKYLSL---HTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRD 145
Query: 686 LSTRNIFLKSLKEPQIGDIELC------KVIDPSKSTGSLSTVAGSVGYIPPEY---AYT 736
           L++RN+ +K+     I D  L       +++ P +   +  +  G++ Y+ PE    A  
Sbjct: 146 LNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVN 205
Query: 737 MRVTMAG----NVYSFGVILLELLTGKTAVNQGNELAKWVL 773
           +R   +     ++Y+ G+I  E+    T +  G  + ++ +
Sbjct: 206 LRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQM 246

>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a Double Mutant Length = 328

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 15/182 (8%)
Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL--HGCLENALD 655
           S  K  +E+ ++  L++ N++     +    + YL  EYA  G +FD L  HG ++   +
Sbjct: 57  SLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHGRMKEK-E 115
Query: 656 WASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS 715
             S++   V   Q   + H      I+  DL   N+ L +    +I D       +    
Sbjct: 116 ARSKFRQIVSAVQ---YCH---QKRIVHRDLKAENLLLDADMNIKIADFGFS---NEFTV 166
Query: 716 TGSLSTVAGSVGYIPPEYAYTMRVTMAG-NVYSFGVILLELLTGKTAVNQGN--ELAKWV 772
            G L    G+  Y  PE     +      +V+S GVIL  L++G    +  N  EL + V
Sbjct: 167 GGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERV 226
Query: 773 LR 774
           LR
Sbjct: 227 LR 228

>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A Pyrrolo-Pyridine Inhibitor Length = 273

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           KE+ +   L++ NV+    +    +  YLF EY   G LFD +   +      A R+   
Sbjct: 54  KEICINAMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQ 113
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +  G+ +LHG     I   D+   N+ L      +I D  L  V   +     L+ + 
Sbjct: 114 --LMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMC 168
Query: 724 GSVGYIPPEYAYTMRVTMAG-NVYSFGVILLELLTGKTAVNQ 764
           G++ Y+ PE            +V+S G++L  +L G+   +Q
Sbjct: 169 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQ 210

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 16/166 (9%)
Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHG------CLE 651
           S   F +E  ++  L +  ++   A V   +  Y+  E+  KG+L D L         L 
Sbjct: 50  SVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEFMAKGSLLDFLKSDEGGKVLLP 109
Query: 652 NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
             +D++++      +A+G+A++        +  DL   N+ +      +I D  L +VI+
Sbjct: 110 KLIDFSAQ------IAEGMAYIE---RKNYIHRDLRAANVLVSESLMCKIADFGLARVIE 160
Query: 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
            ++ T         + +  PE       T+  NV+SFG++L E++T
Sbjct: 161 DNEYTAR-EGAKFPIKWTAPEAINFGCFTIKSNVWSFGILLYEIVT 205

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 94/203 (46%), Gaps = 18/203 (8%)
Query: 122 IGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSY 181
           +  L+ LE L +S+N +     + LA +T L    A  N+ S   P GI   L  L L+ 
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNG 225
Query: 182 NKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTS 241
           N+L  +    L S  NL  +DL+ N +    P +    L  L+LG N +    P A  T+
Sbjct: 226 NQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA 283
Query: 242 LEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLN 301
              LT LEL+ N    + P  + + ++LT L L  N ++   P+   SL  LQ +    N
Sbjct: 284 ---LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFSNN 336
Query: 302 KLSGEIPSQFSQLKLLSTMNISW 324
           K+     S  S L  L+  NI+W
Sbjct: 337 KV-----SDVSSLANLT--NINW 352

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 612 LSNSNVMTPLAY--------VLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           L+ +N+M  L +        V+  +  Y+  EY   G+L D L       L       +A
Sbjct: 52  LAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMA 111
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +A+G+AF+        +  +L   NI +      +I D  L ++I+ ++ T       
Sbjct: 112 AQIAEGMAFIE---ERNYIHRNLRAANILVSDTLSCKIADFGLARLIEDNEYTAR-EGAK 167
Query: 724 GSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
             + +  PE       T+  +V+SFG++L E++T
Sbjct: 168 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 201

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 94/203 (46%), Gaps = 18/203 (8%)
Query: 122 IGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSY 181
           +  L+ LE L +S+N +     + LA +T L    A  N+ S   P GI   L  L L+ 
Sbjct: 172 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNG 229
Query: 182 NKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTS 241
           N+L  +    L S  NL  +DL+ N +    P +    L  L+LG N +    P A  T+
Sbjct: 230 NQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA 287
Query: 242 LEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLN 301
              LT LEL+ N    + P  + + ++LT L L  N ++   P+   SL  LQ +    N
Sbjct: 288 ---LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFANN 340
Query: 302 KLSGEIPSQFSQLKLLSTMNISW 324
           K+     S  S L  L+  NI+W
Sbjct: 341 KV-----SDVSSLANLT--NINW 356

>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo Form) Length = 289

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/250 (20%), Positives = 99/250 (39%), Gaps = 41/250 (16%)
Query: 588 NWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLH 647
           N+S+  F+  S         ++ KLS+ +++      +  D   L  E+   G+L D   
Sbjct: 54  NYSESFFEAAS---------MMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSL-DTYL 103
Query: 648 GCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC 707
              +N ++   +  +A  +A  + FL     N ++  ++  +NI L   ++ + G+    
Sbjct: 104 KKNKNCINILWKLEVAKQLAAAMHFLE---ENTLIHGNVCAKNILLIREEDRKTGNPPFI 160
Query: 708 KVIDPSKSTGSL--STVAGSVGYIPPEYAYTMR-VTMAGNVYSFGVILLELLTGKTAVNQ 764
           K+ DP  S   L    +   + ++PPE     + + +A + +SFG  L E+ +G      
Sbjct: 161 KLSDPGISITVLPKDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGG----- 215
Query: 765 GNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVA-----CVSVSPEAR 819
                          DK    LD          R Q+       +A     C+   P+ R
Sbjct: 216 ---------------DKPLSALDSQRKLQFYEDRHQLPAPKAAELANLINNCMDYEPDHR 260
Query: 820 PKMKSVLRML 829
           P  ++++R L
Sbjct: 261 PSFRAIIRDL 270

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 94/203 (46%), Gaps = 18/203 (8%)
Query: 122 IGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSY 181
           +  L+ LE L +S+N +     + LA +T L    A  N+ S   P GI   L  L L+ 
Sbjct: 173 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNG 230
Query: 182 NKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTS 241
           N+L  +    L S  NL  +DL+ N +    P +    L  L+LG N +    P A  T+
Sbjct: 231 NQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA 288
Query: 242 LEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLN 301
              LT LEL+ N    + P  + + ++LT L L  N ++   P+   SL  LQ +    N
Sbjct: 289 ---LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNN 341
Query: 302 KLSGEIPSQFSQLKLLSTMNISW 324
           K+     S  S L  L+  NI+W
Sbjct: 342 KV-----SDVSSLANLT--NINW 357

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 16/166 (9%)
Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHG------CLE 651
           S   F +E  ++  L +  ++   A V   +  Y+  EY  KG+L D L         L 
Sbjct: 51  SVQAFLEEANLMKTLQHDKLVRLYAVVTREEPIYIITEYMAKGSLLDFLKSDEGGKVLLP 110
Query: 652 NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
             +D++++      +A+G+A++        +  DL   N+ +      +I D  L +VI+
Sbjct: 111 KLIDFSAQ------IAEGMAYIE---RKNYIHRDLRAANVLVSESLMCKIADFGLARVIE 161
Query: 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
            ++ T         + +  PE       T+  +V+SFG++L E++T
Sbjct: 162 DNEYTAR-EGAKFPIKWTAPEAINFGCFTIKSDVWSFGILLYEIVT 206

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 94/203 (46%), Gaps = 18/203 (8%)
Query: 122 IGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSY 181
           +  L+ LE L +S+N +     + LA +T L    A  N+ S   P GI   L  L L+ 
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNG 225
Query: 182 NKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTS 241
           N+L  +    L S  NL  +DL+ N +    P +    L  L+LG N +    P A  T+
Sbjct: 226 NQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA 283
Query: 242 LEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLN 301
              LT LEL+ N    + P  + + ++LT L L  N ++   P+   SL  LQ +    N
Sbjct: 284 ---LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNN 336
Query: 302 KLSGEIPSQFSQLKLLSTMNISW 324
           K+     S  S L  L+  NI+W
Sbjct: 337 KV-----SDVSSLANLT--NINW 352

>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase Domain Length = 317

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 97/236 (41%), Gaps = 28/236 (11%)
Query: 605 ELEVLGKL-SNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           EL+++  L  + N++  L          +  EY   G L + L    E  LD      + 
Sbjct: 91  ELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEADLDKEDGRPLE 150
Query: 664 V--------GVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS 715
           +         VAQG+AFL    S   +  D++ RN+ L +    +IGD  L + I    +
Sbjct: 151 LRDLLHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSN 207
Query: 716 TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRN 775
                     V ++ PE  +    T+  +V+S+G++L E+ +       G      +L N
Sbjct: 208 YIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPG------ILVN 261
Query: 776 SAQQDKLDHILD--FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
           S    K   ++   + +++ + A ++    +  +  AC ++ P  RP  + +   L
Sbjct: 262 S----KFYKLVKDGYQMAQPAFAPKN----IYSIMQACWALEPTHRPTFQQICSFL 309

>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta Length = 676

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 24/168 (14%)
Query: 605 ELEVLGKLSNSNVMTP------LAYVLASDSAYLFYEYAPKGTLFDVLHGCLENA--LDW 656
           E++++ KL++ NV++       L  +  +D   L  EY   G L   L+   EN   L  
Sbjct: 62  EIQIMKKLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQ-FENCCGLKE 120
Query: 657 ASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQ-----IGDIELCKVID 711
               ++   ++  L +LH    N I+  DL   NI L+    PQ     I D+   K +D
Sbjct: 121 GPIRTLLSDISSALRYLH---ENRIIHRDLKPENIVLQP--GPQRLIHKIIDLGYAKELD 175
Query: 712 PSKSTGSLST-VAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTG 758
                G L T   G++ Y+ PE     + T+  + +SFG +  E +TG
Sbjct: 176 ----QGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITG 219

>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta (I4122) Length = 677

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 24/168 (14%)
Query: 605 ELEVLGKLSNSNVMTP------LAYVLASDSAYLFYEYAPKGTLFDVLHGCLENA--LDW 656
           E++++ KL++ NV++       L  +  +D   L  EY   G L   L+   EN   L  
Sbjct: 63  EIQIMKKLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQ-FENCCGLKE 121
Query: 657 ASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQ-----IGDIELCKVID 711
               ++   ++  L +LH    N I+  DL   NI L+    PQ     I D+   K +D
Sbjct: 122 GPIRTLLSDISSALRYLH---ENRIIHRDLKPENIVLQP--GPQRLIHKIIDLGYAKELD 176
Query: 712 PSKSTGSLST-VAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTG 758
                G L T   G++ Y+ PE     + T+  + +SFG +  E +TG
Sbjct: 177 ----QGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITG 220

>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n Inactivating Mutant In Apo Form Length = 303

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 31/174 (17%)
Query: 612 LSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY-SIAVGVAQGL 670
           L   N + P   V    + ++  EY    TL+D++H   EN       Y  +   + + L
Sbjct: 72  LERRNFVKPXTAVKKKSTLFIQXEYCENRTLYDLIHS--ENLNQQRDEYWRLFRQILEAL 129
Query: 671 AFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS------------KSTGS 718
           +++H   S  I+  +L   NIF+   +  +IGD  L K +  S             S+ +
Sbjct: 130 SYIH---SQGIIHRNLKPXNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDN 186
Query: 719 LSTVAGSVGYIPPEY-----AYTMRVTMAGNVYSFGVILLELL----TGKTAVN 763
           L++  G+  Y+  E       Y  ++    + YS G+I  E +    TG   VN
Sbjct: 187 LTSAIGTAXYVATEVLDGTGHYNEKI----DXYSLGIIFFEXIYPFSTGXERVN 236

>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp Analog And Substrate Peptide Length = 334

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 19/166 (11%)
Query: 606 LEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHG--------------CLE 651
           ++++GK  + N++  L         Y+  EYA KG L + L                  E
Sbjct: 94  MKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEXSYDINRVPE 151
Query: 652 NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
             + +    S    +A+G+ +L    S   +  DL+ RN+ +      +I D  L + I+
Sbjct: 152 EQMTFKDLVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDIN 208
Query: 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   +     V ++ PE  +    T   +V+SFGV++ E+ T
Sbjct: 209 NIDXXKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFT 254

>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human Chk1 Kinase Domain Length = 273

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           KE+ +   L++ NV+    +    +  YLF EY   G LFD +   +      A R+   
Sbjct: 53  KEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQ 112
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +  G+ +LHG     I   D+   N+ L      +I D  L  V   +     L+ + 
Sbjct: 113 --LMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMC 167
Query: 724 GSVGYIPPEYAYTMRVTMAG-NVYSFGVILLELLTGKTAVNQ 764
           G++ Y+ PE            +V+S G++L  +L G+   +Q
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQ 209

>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint Kinase Inhibitors - Hit To Lead Exploration Length = 276

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           KE+ +   L++ NV+    +    +  YLF EY   G LFD +   +      A R+   
Sbjct: 54  KEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQ 113
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +  G+ +LHG     I   D+   N+ L      +I D  L  V   +     L+ + 
Sbjct: 114 --LMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMC 168
Query: 724 GSVGYIPPEYAYTMRVTMAG-NVYSFGVILLELLTGKTAVNQ 764
           G++ Y+ PE            +V+S G++L  +L G+   +Q
Sbjct: 169 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQ 210

>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain Of Csf-1r Length = 329

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 12/162 (7%)
Query: 605 ELEVLGKL-SNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           EL+++  L  + N++  L          +  EY   G L + L    E  LD      + 
Sbjct: 99  ELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEADLDKEDGRPLE 158
Query: 664 V--------GVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS 715
           +         VAQG+AFL    S   +  D++ RN+ L +    +IGD  L + I    +
Sbjct: 159 LRDLLHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSN 215
Query: 716 TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                     V ++ PE  +    T+  +V+S+G++L E+ +
Sbjct: 216 YIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFS 257

>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding Site Length = 271

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           KE+ +   L++ NV+    +    +  YLF EY   G LFD +   +      A R+   
Sbjct: 53  KEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQ 112
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +  G+ +LHG     I   D+   N+ L      +I D  L  V   +     L+ + 
Sbjct: 113 --LMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMC 167
Query: 724 GSVGYIPPEYAYTMRVTMAG-NVYSFGVILLELLTGKTAVNQ 764
           G++ Y+ PE            +V+S G++L  +L G+   +Q
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQ 209

>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017 Length = 268

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           KE+ +   L++ NV+    +    +  YLF EY   G LFD +   +      A R+   
Sbjct: 53  KEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQ 112
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +  G+ +LHG     I   D+   N+ L      +I D  L  V   +     L+ + 
Sbjct: 113 --LMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMC 167
Query: 724 GSVGYIPPEYAYTMRVTMAG-NVYSFGVILLELLTGKTAVNQ 764
           G++ Y+ PE            +V+S G++L  +L G+   +Q
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQ 209

>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994 Length = 269

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           KE+ +   L++ NV+    +    +  YLF EY   G LFD +   +      A R+   
Sbjct: 53  KEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQ 112
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +  G+ +LHG     I   D+   N+ L      +I D  L  V   +     L+ + 
Sbjct: 113 --LMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMC 167
Query: 724 GSVGYIPPEYAYTMRVTMAG-NVYSFGVILLELLTGKTAVNQ 764
           G++ Y+ PE            +V+S G++L  +L G+   +Q
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQ 209

>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor Length = 269

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           KE+ +   L++ NV+    +    +  YLF EY   G LFD +   +      A R+   
Sbjct: 54  KEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQ 113
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +  G+ +LHG     I   D+   N+ L      +I D  L  V   +     L+ + 
Sbjct: 114 --LMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMC 168
Query: 724 GSVGYIPPEYAYTMRVTMAG-NVYSFGVILLELLTGKTAVNQ 764
           G++ Y+ PE            +V+S G++L  +L G+   +Q
Sbjct: 169 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQ 210

>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target Length = 303

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 98/238 (41%), Gaps = 26/238 (10%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENA------LDWA 657
           KE++ + +  + N+++     +  D  +L  +    G++ D++   +         LD +
Sbjct: 62  KEIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDES 121
Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
           +  +I   V +GL +LH    N  +  D+   NI L      QI D  +   +    +TG
Sbjct: 122 TIATILREVLEGLEYLH---KNGQIHRDVKAGNILLGEDGSVQIADFGVSAFL----ATG 174
Query: 718 S-------LSTVAGSVGYIPPEYAYTMR-VTMAGNVYSFGVILLELLTGKTAVNQGNELA 769
                     T  G+  ++ PE    +R      +++SFG+  +EL TG    ++   + 
Sbjct: 175 GDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMK 234
Query: 770 KWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLR 827
             VL  + Q D     L+  V    + ++    +  K+   C+   PE RP    +LR
Sbjct: 235 --VLMLTLQNDPPS--LETGVQDKEM-LKKYGKSFRKMISLCLQKDPEKRPTAAELLR 287

>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains Trapped In Trans-Phosphorylation Reaction Length = 334

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 19/166 (11%)
Query: 606 LEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHG--------------CLE 651
           ++++GK  + N++  L         Y+  EYA KG L + L                  E
Sbjct: 94  MKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPE 151
Query: 652 NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
             + +    S    +A+G+ +L    S   +  DL+ RN+ +      +I D  L + I+
Sbjct: 152 EQMTFKDLVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDIN 208
Query: 712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   +     V ++ PE  +    T   +V+SFGV++ E+ T
Sbjct: 209 NIDXXKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFT 254

>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B Akt By Hydrophobic Motif Phosphorylation Length = 315

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 9/152 (5%)
Query: 618 MTPLAYVLASDSAYLF-YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGF 676
           +T L Y   +     F  EYA  G LF   H   E              +   L +LH  
Sbjct: 67  LTALKYAFQTHDRLCFVMEYANGGELF--FHLSRERVFTEERARFYGAEIVSALEYLH-- 122
Query: 677 TSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT 736
            S  ++  D+   N+ L      +I D  LCK  +      ++ T  G+  Y+ PE    
Sbjct: 123 -SRDVVYRDIKLENLMLDKDGHIKITDFGLCK--EGISDGATMKTFCGTPEYLAPEVLED 179
Query: 737 MRVTMAGNVYSFGVILLELLTGKTAV-NQGNE 767
                A + +  GV++ E++ G+    NQ +E
Sbjct: 180 NDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE 211

>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6 Bound To Amppnp Length = 576

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
           A  +  GL  LH      I+  DL   NI L      +I D+ L  V  P   T  +   
Sbjct: 292 AAEICCGLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGL-AVHVPEGQT--IKGR 345
Query: 723 AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQ 764
            G+VGY+ PE     R T + + ++ G +L E++ G++   Q
Sbjct: 346 VGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQ 387

>pdb|4FST|A Chain A, Crystal Structure Of The Chk1 Length = 269

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIA 663
           KE+ +   L++ NV+    +    +  YLF EY   G LFD +   +      A R+   
Sbjct: 53  KEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQ 112
Query: 664 VGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA 723
             +  G+ +LHG     I   D+   N+ L      +I D  L  V   +     L+ + 
Sbjct: 113 --LMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMX 167
Query: 724 GSVGYIPPEYAYTMRVTMAG-NVYSFGVILLELLTGKTAVNQ 764
           G++ Y+ PE            +V+S G++L  +L G+   +Q
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQ 209

>pdb|3LM0|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B (STK17B) Length = 327

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNI 691
           L  EYA  G +F +   CL    +  S   +   + Q L  ++    N I+ LDL  +NI
Sbjct: 106 LILEYAAGGEIFSL---CLPELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNI 162
Query: 692 FLKSLKEPQIGDIELCKVID--PSKSTG---SLSTVAGSVGYIPPEYAYTMRVTMAGNVY 746
            L S+    +GDI   K++D   S+  G    L  + G+  Y+ PE      +T A +++
Sbjct: 163 LLSSIY--PLGDI---KIVDFGMSRKIGHACELREIMGTPEYLAPEILNYDPITTATDMW 217
Query: 747 SFGVILLELLT 757
           + G+I   LLT
Sbjct: 218 NIGIIAYMLLT 228

>pdb|3H9R|A Chain A, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 330

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 26/185 (14%)
Query: 592 KIFQLGSHHKFDKELEVLGK--LSNSNVMTPLAYVLASDSA----YLFYEYAPKGTLFDV 645
           KIF       + +E E+     L + N++  +A  + S  +    +L   Y   G+L+D 
Sbjct: 66  KIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDY 125
Query: 646 LHGCLENALDWASRYSIAVGVAQGLAFLH----GFTSNP-ILLLDLSTRNIFLKSLKEPQ 700
           L       LD  S   I + +A GLA LH    G    P I   DL ++NI +K   +  
Sbjct: 126 LQ---LTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCC 182
Query: 701 IGDIELCKVIDPSKSTGSLST----VAGSVGYIPPEY-AYTMRVTMAG-----NVYSFGV 750
           I D+ L   +  S+ST  L        G+  Y+ PE    T++V         ++++FG+
Sbjct: 183 IADLGL--AVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGL 240
Query: 751 ILLEL 755
           +L E+
Sbjct: 241 VLWEV 245

>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6 In Complex With Sangivamycin Length = 576

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 663 AVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTV 722
           A  +  GL  LH      I+  DL   NI L      +I D+ L  V  P   T  +   
Sbjct: 292 AAEICCGLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGL-AVHVPEGQT--IKGR 345
Query: 723 AGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQ 764
            G+VGY+ PE     R T + + ++ G +L E++ G++   Q
Sbjct: 346 VGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQ 387

>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain Length = 339

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 9/152 (5%)
Query: 618 MTPLAYVLASDSAYLF-YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGF 676
           +T L Y   +     F  EYA  G LF   H   E              +   L +LH  
Sbjct: 70  LTALKYAFQTHDRLCFVMEYANGGELF--FHLSRERVFTEERARFYGAEIVSALEYLH-- 125
Query: 677 TSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT 736
            S  ++  D+   N+ L      +I D  LCK  +      ++ T  G+  Y+ PE    
Sbjct: 126 -SRDVVYRDIKLENLMLDKDGHIKITDFGLCK--EGISDGATMKTFCGTPEYLAPEVLED 182
Query: 737 MRVTMAGNVYSFGVILLELLTGKTAV-NQGNE 767
                A + +  GV++ E++ G+    NQ +E
Sbjct: 183 NDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE 214

>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain Length = 335

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 9/152 (5%)
Query: 618 MTPLAYVLASDSAYLF-YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGF 676
           +T L Y   +     F  EYA  G LF   H   E              +   L +LH  
Sbjct: 67  LTALKYAFQTHDRLCFVMEYANGGELF--FHLSRERVFTEERARFYGAEIVSALEYLH-- 122
Query: 677 TSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT 736
            S  ++  D+   N+ L      +I D  LCK  +      ++ T  G+  Y+ PE    
Sbjct: 123 -SRDVVYRDIKLENLMLDKDGHIKITDFGLCK--EGISDGATMKTFCGTPEYLAPEVLED 179
Query: 737 MRVTMAGNVYSFGVILLELLTGKTAV-NQGNE 767
                A + +  GV++ E++ G+    NQ +E
Sbjct: 180 NDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE 211

>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain Length = 290

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 98/238 (41%), Gaps = 26/238 (10%)
Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENA------LDWA 657
           KE++ + +  + N+++     +  D  +L  +    G++ D++   +         LD +
Sbjct: 57  KEIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDES 116
Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
           +  +I   V +GL +LH    N  +  D+   NI L      QI D  +   +    +TG
Sbjct: 117 TIATILREVLEGLEYLH---KNGQIHRDVKAGNILLGEDGSVQIADFGVSAFL----ATG 169
Query: 718 S-------LSTVAGSVGYIPPEYAYTMR-VTMAGNVYSFGVILLELLTGKTAVNQGNELA 769
                     T  G+  ++ PE    +R      +++SFG+  +EL TG    ++   + 
Sbjct: 170 GDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMK 229
Query: 770 KWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLR 827
             VL  + Q D     L+  V    + ++    +  K+   C+   PE RP    +LR
Sbjct: 230 --VLMLTLQNDPPS--LETGVQDKEM-LKKYGKSFRKMISLCLQKDPEKRPTAAELLR 282

>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone Inhibitor Length = 335

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 19/166 (11%)
Query: 666 VAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGS 725
           VAQG+AFL    S   +  D++ RN+ L +    +IGD  L + I    +          
Sbjct: 175 VAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLP 231
Query: 726 VGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHI 785
           V ++ PE  +    T+  +V+S+G++L E+ +       G      +L NS    K   +
Sbjct: 232 VKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPG------ILVNS----KFYKL 281
Query: 786 LD--FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
           +   + +++ + A ++    +  +  AC ++ P  RP  + +   L
Sbjct: 282 VKDGYQMAQPAFAPKN----IYSIMQACWALEPTHRPTFQQICSFL 323

>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With Nms-P937 Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 7/159 (4%)
Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY 660
           K   E+ +   L++ +V+    +   +D  ++  E   + +L + LH   +   +  +RY
Sbjct: 63  KMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLE-LHKRRKALTEPEARY 121
Query: 661 SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLS 720
            +   +  G  +LH    N ++  DL   N+FL    E +IGD  L   ++         
Sbjct: 122 YLR-QIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKK-- 175
Query: 721 TVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
           T+ G+  YI PE       +   +V+S G I+  LL GK
Sbjct: 176 TLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGK 214

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	833
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-111
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-109
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-109
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-106
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-72
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-63
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-76
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-73
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-69
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-59
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-58
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-38
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-69
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-68
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-66
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-56
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-48
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-68
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-60
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-52
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-65
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-55
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-63
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-56
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-39
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-59
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-45
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-31
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-52
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-49
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-48
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-47
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-44
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	1e-47
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-46
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-44
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-34
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-14
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	2e-44
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-44
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-43
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-07
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	9e-43
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-39
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-38
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-33
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
3soc_A	322	Activin receptor type-2A; structural genomics cons	5e-38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-37
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-37
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-37
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-35
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-35
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-34
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-27
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-33
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-33
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-31
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-28
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-31
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-30
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-30
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-29
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-30
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-30
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-28
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-23
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	4e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-27
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-12
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	3e-27
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-27
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-26
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-25
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-04
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	6e-25
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-24
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	1e-23
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	2e-23
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	5e-23
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	6e-23
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	2e-22
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	2e-22
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	7e-22
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	1e-21
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	3e-21
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-21
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
3q4u_A	301	Activin receptor type-1; structural genomics conso	2e-20
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-20
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-20
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-07
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	1e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-15
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-07
2a19_B	284	Interferon-induced, double-stranded RNA-activated	1e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	1e-13
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	2e-13
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	4e-13
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	5e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-04
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	1e-12
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	1e-12
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	1e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-05
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	7e-12
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	1e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	2e-11
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	2e-11
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	4e-11
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	5e-11
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	5e-11
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	9e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-04
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	1e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-08
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	2e-10
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	3e-10
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	4e-10
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	4e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-04
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	6e-10
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-10
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-04
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	8e-10
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	1e-09
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	1e-09
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	1e-09
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	1e-09
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	1e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	2e-09
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	3e-09
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-09
3ork_A	311	Serine/threonine protein kinase; structural genomi	5e-09
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	9e-09
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	1e-08
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	1e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-04
3bhy_A	283	Death-associated protein kinase 3; death associate	2e-08
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	2e-08
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	2e-08
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-05
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	2e-08
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-08
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	3e-08
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	3e-08
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	4e-08
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	4e-08
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	5e-08
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	5e-08
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	5e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	6e-08
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	6e-08
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	6e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	6e-08
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	8e-08
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	9e-08
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	9e-08
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-07
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	2e-07
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	4e-07
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	4e-07
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	5e-07
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	5e-07
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	6e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-05
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	7e-07
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	7e-07
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	8e-07
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	9e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	9e-07
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	1e-06
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	1e-06
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	1e-06
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	1e-06
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	1e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-06
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	2e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-05
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	2e-06
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	3e-06
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	3e-06
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	3e-06
3pls_A	298	Macrophage-stimulating protein receptor; protein k	4e-06
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	4e-06
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	4e-06
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	4e-06
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	6e-06
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	6e-06
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	6e-06
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	7e-06
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	7e-06
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	7e-06
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	8e-06
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	8e-06
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	8e-06
3uqc_A	286	Probable conserved transmembrane protein; structur	1e-05
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	1e-05
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	1e-05
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	1e-05
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	1e-05
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	2e-05
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	2e-05
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	2e-05
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	3e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-04
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	4e-05
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	4e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	6e-05
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	8e-05
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	9e-05
4aoj_A	329	High affinity nerve growth factor receptor; transf	1e-04
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	1e-04
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	1e-04
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	1e-04
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	3e-04
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	3e-04
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	3e-04
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	4e-04
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	4e-04
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	4e-04
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	5e-04
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	5e-04
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	5e-04
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	5e-04
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	5e-04
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	5e-04
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	6e-04
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  357 bits (918), Expect = e-111
 Identities = 150/460 (32%), Positives = 220/460 (47%), Gaps = 26/460 (5%)

Query: 10  LKLLNFSKNELV-SLPTFNGFAGLEVLDFSSNNLNGNI--NLQFDELVSLKSLNLSKNKF 66
           L+ L  S + +  S+  F   A L  LD S N+L+G +           LK LN+S N  
Sbjct: 79  LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 138

Query: 67  NGFLPINLG-KTKALEELVLSGNAFHGEIPKGIADY---RNLTLIDLSANNLSGSVPDRI 122
           +    ++ G K  +LE L LS N+  G    G         L  + +S N +SG V   +
Sbjct: 139 DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--V 196

Query: 123 GELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRF--LRNLDLS 180
                LE L +S+NN    +P  L   + L     + NK SG     I+    L+ L++S
Sbjct: 197 SRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255

Query: 181 YNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS---PNLVRLRLGTNLLIGEIPSA 237
            N+ +G IP   L   +LQ + L+ N   G +P  +S     L  L L  N   G +P  
Sbjct: 256 SNQFVGPIPPLPLK--SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP- 312

Query: 238 TFTSLEKLTYLELDNNSFTGMIPQQ-LGSCRSLTLLNLAQNELNGSLPIQLGSLGI-LQV 295
            F S   L  L L +N+F+G +P   L   R L +L+L+ NE +G LP  L +L   L  
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372

Query: 296 MNLQLNKLSGEIPSQFSQLKL--LSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNG 353
           ++L  N  SG I     Q     L  + +  N  +G IP  LSN + LV+L+L  N L+G
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432

Query: 354 SIPNSITNMRSLIELQLGGNQLSGTIP---MMPPRLQIALNLSSNLFEGPIPTTFARLNG 410
           +IP+S+ ++  L +L+L  N L G IP   M    L+  L L  N   G IP+  +    
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET-LILDFNDLTGEIPSGLSNCTN 491

Query: 411 LEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVP 450
           L  + LSNNR +GEIP+ + ++  L  L L+NN  SG +P
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  352 bits (906), Expect = e-109
 Identities = 151/475 (31%), Positives = 229/475 (48%), Gaps = 23/475 (4%)

Query: 10  LKLLNFSKNELV-SLPT--FNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKF 66
           L+ L+ ++N+    +P         L  LD S N+  G +   F     L+SL LS N F
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330

Query: 67  NGFLPIN-LGKTKALEELVLSGNAFHGEIPKGIADYR-NLTLIDLSANNLSGSVPDRIGE 124
           +G LP++ L K + L+ L LS N F GE+P+ + +   +L  +DLS+NN SG +   + +
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390

Query: 125 --LSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRF--LRNLDLS 180
              + L+ L L  N   G++P +L++ + L     + N  SG++P  +     LR+L L 
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450

Query: 181 YNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEIPSAT 238
            N L G IP +L+    L+T+ L  N L G +P  +S   NL  + L  N L GEIP   
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK-W 509

Query: 239 FTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNL 298
              LE L  L+L NNSF+G IP +LG CRSL  L+L  N  NG++P  +          +
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----I 565

Query: 299 QLNKLSGEIPSQFSQLKLLSTMNISWN--SLSGSIPSFLSNLTNLVNLNLRQNNLNGSIP 356
             N ++G+         +    + + N     G     L+ L+     N+      G   
Sbjct: 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625

Query: 357 NSITNMRSLIELQLGGNQLSGTIPMMPPRLQ--IALNLSSNLFEGPIPTTFARLNGLEVL 414
            +  N  S++ L +  N LSG IP     +     LNL  N   G IP     L GL +L
Sbjct: 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685

Query: 415 DLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPK---FSKWVSVDTTGNLKL 466
           DLS+N+  G IPQ ++ +  LT++ L+NN LSG +P+   F  +       N  L
Sbjct: 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  352 bits (905), Expect = e-109
 Identities = 143/460 (31%), Positives = 209/460 (45%), Gaps = 27/460 (5%)

Query: 10  LKLLNFSKNEL---VSLPTFNGFAGLEVLDFSSNNLNGNI---NLQFDELVSLKSLNLSK 63
           LK LN S N L     +        LEVLD S+N+++G      +  D    LK L +S 
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187

Query: 64  NKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIG 123
           NK +G + +   +   LE L +S N F   IP  + D   L  +D+S N LSG     I 
Sbjct: 188 NKISGDVDV--SRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAIS 244

Query: 124 ELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNL---DLS 180
             ++L++L +S+N   G +P     + +L   +  +NKF+G +P  ++     L   DLS
Sbjct: 245 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302

Query: 181 YNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNM---SPNLVRLRLGTNLLIGEIPSA 237
            N   G +P    S   L+++ LS N   G LP +       L  L L  N   GE+P +
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362

Query: 238 TFTSLEKLTYLELDNNSFTGMIPQQLGSC--RSLTLLNLAQNELNGSLPIQLGSLGILQV 295
                  L  L+L +N+F+G I   L      +L  L L  N   G +P  L +   L  
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422

Query: 296 MNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSI 355
           ++L  N LSG IPS    L  L  + +  N L G IP  L  +  L  L L  N+L G I
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482

Query: 356 PNSITNMRSLIELQLGGNQLSGTIPM---MPPRLQIALNLSSNLFEGPIPTTFARLNGLE 412
           P+ ++N  +L  + L  N+L+G IP        L I L LS+N F G IP        L 
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI-LKLSNNSFSGNIPAELGDCRSLI 541

Query: 413 VLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKF 452
            LDL+ N F+G IP  + +        +  N ++G    +
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVY 577

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  342 bits (880), Expect = e-106
 Identities = 145/456 (31%), Positives = 220/456 (48%), Gaps = 21/456 (4%)

Query: 10  LKLLNFSKNELV-SLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNG 68
           L+ L+ S N     +P     + L+ LD S N L+G+ +        LK LN+S N+F G
Sbjct: 202 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261

Query: 69  FLPINLGKTKALEELVLSGNAFHGEIPKGIADY-RNLTLIDLSANNLSGSVPDRIGELSK 127
            +P      K+L+ L L+ N F GEIP  ++     LT +DLS N+  G+VP   G  S 
Sbjct: 262 PIP--PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319

Query: 128 LEVLILSANNLDGRLPT-SLASITTLSRFAANQNKFSGSVP---GGITRFLRNLDLSYNK 183
           LE L LS+NN  G LP  +L  +  L     + N+FSG +P     ++  L  LDLS N 
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379

Query: 184 LLGVIPIDL--LSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEIPSATF 239
             G I  +L       LQ + L  N   G +P  +S    LV L L  N L G IPS + 
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-SL 438

Query: 240 TSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQ 299
            SL KL  L+L  N   G IPQ+L   ++L  L L  N+L G +P  L +   L  ++L 
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498

Query: 300 LNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSI 359
            N+L+GEIP    +L+ L+ + +S NS SG+IP+ L +  +L+ L+L  N  NG+IP ++
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558

Query: 360 TNMRSLIELQLGGNQLSGTIPMMPPRL----QIALNLSSNLFEGPIPTTFARLNGLEVLD 415
                     +  N ++G   +         +     +   F+G       RL+     +
Sbjct: 559 FKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614

Query: 416 LSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPK 451
           +++  + G          ++  L ++ N LSG +PK
Sbjct: 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  316 bits (812), Expect = 4e-96
 Identities = 128/416 (30%), Positives = 190/416 (45%), Gaps = 27/416 (6%)

Query: 55  SLKSLNLSKNKFNGF---LPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSA 111
            + S++LS    N     +  +L     LE L LS +  +G +  G     +LT +DLS 
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSR 109

Query: 112 NNLSGSVPDR--IGELSKLEVLILSANNLDGRLPTS-LASITTLSRFAANQNKFSGSVPG 168
           N+LSG V     +G  S L+ L +S+N LD     S    + +L     + N  SG+   
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 169 GITRF-----LRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQ-NMSPNLVR 222
           G         L++L +S NK+ G + +      NL+ +D+S N     +P       L  
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIPFLGDCSALQH 227

Query: 223 LRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGS 282
           L +  N L G+      ++  +L  L + +N F G IP      +SL  L+LA+N+  G 
Sbjct: 228 LDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGE 284

Query: 283 LPIQL-GSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIP-SFLSNLTN 340
           +P  L G+   L  ++L  N   G +P  F    LL ++ +S N+ SG +P   L  +  
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344

Query: 341 LVNLNLRQNNLNGSIPNSITNMR-SLIELQLGGNQLSGTIP-----MMPPRLQIALNLSS 394
           L  L+L  N  +G +P S+TN+  SL+ L L  N  SG I           LQ  L L +
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE-LYLQN 403

Query: 395 NLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVP 450
           N F G IP T +  + L  L LS N  SG IP  L  +  L  L L  N L G +P
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  250 bits (640), Expect = 9e-72
 Identities = 108/368 (29%), Positives = 164/368 (44%), Gaps = 47/368 (12%)

Query: 100 DYRNLTLIDLSANNLS---GSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFA 156
               +T IDLS+  L+    +V   +  L+ LE L LS ++                   
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSH------------------- 88

Query: 157 ANQNKFSGSVPG-GITRFLRNLDLSYNKLLGVIPID--LLSHPNLQTIDLSVNMLEGSLP 213
                 +GSV G   +  L +LDLS N L G +     L S   L+ +++S N L+    
Sbjct: 89  -----INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143

Query: 214 QNMSPNLVRLR---LGTNLLIGEIPS--ATFTSLEKLTYLELDNNSFTGMIPQQLGSCRS 268
            +    L  L    L  N + G             +L +L +  N  +G +   +  C +
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVN 201

Query: 269 LTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLS 328
           L  L+++ N  +  +P  LG    LQ +++  NKLSG+     S    L  +NIS N   
Sbjct: 202 LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260

Query: 329 GSIPSFLSNLTNLVNLNLRQNNLNGSIPNSIT-NMRSLIELQLGGNQLSGTIPM---MPP 384
           G IP     L +L  L+L +N   G IP+ ++    +L  L L GN   G +P       
Sbjct: 261 GPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318

Query: 385 RLQIALNLSSNLFEGPIPT-TFARLNGLEVLDLSNNRFSGEIPQLLAQM-PTLTQLLLTN 442
            L+  L LSSN F G +P  T  ++ GL+VLDLS N FSGE+P+ L  +  +L  L L++
Sbjct: 319 LLES-LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377

Query: 443 NQLSGVVP 450
           N  SG + 
Sbjct: 378 NNFSGPIL 385

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  225 bits (575), Expect = 7e-63
 Identities = 83/291 (28%), Positives = 138/291 (47%), Gaps = 15/291 (5%)

Query: 174 LRNLDLSYNKL---LGVIPIDLLSHPNLQTIDLSVNMLEGSLPQ-NMSPNLVRLRLGTNL 229
           + ++DLS   L      +   LLS   L+++ LS + + GS+     S +L  L L  N 
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111

Query: 230 LIGEIPS-ATFTSLEKLTYLELDNNSFTGMIPQQLG-SCRSLTLLNLAQNELNGSLPIQL 287
           L G + +  +  S   L +L + +N+         G    SL +L+L+ N ++G+  +  
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171

Query: 288 ---GSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNL 344
                 G L+ + +  NK+SG++    S+   L  +++S N+ S  IP  L + + L +L
Sbjct: 172 VLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHL 228

Query: 345 NLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMP-PRLQIALNLSSNLFEGPIPT 403
           ++  N L+G    +I+    L  L +  NQ  G IP +P   LQ  L+L+ N F G IP 
Sbjct: 229 DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQY-LSLAENKFTGEIPD 287

Query: 404 TFA-RLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFS 453
             +   + L  LDLS N F G +P        L  L L++N  SG +P  +
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  129 bits (326), Expect = 7e-31
 Identities = 38/176 (21%), Positives = 79/176 (44%), Gaps = 13/176 (7%)

Query: 288 GSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLR 347
             +  + + +  LN     + S    L  L ++ +S + ++GS+  F     +L +L+L 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGF-KCSASLTSLDLS 108

Query: 348 QNNLNGSIP--NSITNMRSLIELQLGGNQLSGTIPMMP----PRLQIALNLSSNLFEGPI 401
           +N+L+G +    S+ +   L  L +  N L     +        L++ L+LS+N   G  
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV-LDLSANSISGAN 167

Query: 402 PTTFARLNG---LEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSK 454
              +   +G   L+ L +S N+ SG++   +++   L  L +++N  S  +P    
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGD 221

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  119 bits (300), Expect = 8e-28
 Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 2/178 (1%)

Query: 3   SCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLS 62
           +     G    NF   +       +G         +     G  + Q + L +    N++
Sbjct: 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616

Query: 63  KNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRI 122
              + G          ++  L +S N   G IPK I     L +++L  N++SGS+PD +
Sbjct: 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676

Query: 123 GELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLS 180
           G+L  L +L LS+N LDGR+P +++++T L+    + N  SG +P            +
Sbjct: 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM--GQFETFPPA 732

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  261 bits (668), Expect = 2e-76
 Identities = 102/476 (21%), Positives = 169/476 (35%), Gaps = 40/476 (8%)

Query: 2   QSCGGIDGLKLLNFSKNELVSLP----TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLK 57
            +   ++ L+ L  S N++ +L          + L+ L+ SSN +       F  +  L 
Sbjct: 139 GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF 198

Query: 58  SLNLSKNKFNGFLPINLG---KTKALEELVLSGNAFHGEIPKGIA--DYRNLTLIDLSAN 112
            L L+  +    L   L       ++  L LS +              + NLT++DLS N
Sbjct: 199 GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258

Query: 113 NLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITR 172
           NL+    D    L +LE   L  NN+      SL  +  +      ++            
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS------------ 306

Query: 173 FLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLL 230
                 +S   L  +          L+ +++  N + G      +   NL  L L  +  
Sbjct: 307 -FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

Query: 231 -IGEIPSATFTSLE--KLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQ- 286
            +  + + TF SL    L  L L  N  + +          L +L+L  NE+   L  Q 
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

Query: 287 LGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSG--SIPSFLSNLTNLVNL 344
              L  +  + L  NK      + F+ +  L  + +   +L    S PS    L NL  L
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485

Query: 345 NLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIA----------LNLSS 394
           +L  NN+     + +  +  L  L L  N L+       P   I           LNL S
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545

Query: 395 NLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVP 450
           N F+      F  L  L+++DL  N  +     +     +L  L L  N ++ V  
Sbjct: 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  251 bits (644), Expect = 5e-73
 Identities = 105/487 (21%), Positives = 168/487 (34%), Gaps = 32/487 (6%)

Query: 10  LKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFN 67
           L  L+   N +  L          L+VL+   N L+   +  F    +L  L+L  N   
Sbjct: 51  LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 110

Query: 68  GFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPD--RIGEL 125
                   K K L  L LS N              NL  + LS N +     +   I   
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170

Query: 126 SKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRF-----LRNLDLS 180
           S L+ L LS+N +    P    +I  L     N  +   S+   +        +RNL LS
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230

Query: 181 YNKLLGVIP--IDLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEIPS 236
            ++L          L   NL  +DLS N L      + +  P L    L  N +   + S
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH-LFS 289

Query: 237 ATFTSLEKLTYLELDNN---------SFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQL 287
            +   L  + YL L  +         S   +        + L  LN+  N++ G      
Sbjct: 290 HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 349

Query: 288 GSLGILQVMNLQLNKLSGE--IPSQFSQLKL--LSTMNISWNSLSGSIPSFLSNLTNLVN 343
             L  L+ ++L  +  S        F  L    L  +N++ N +S       S L +L  
Sbjct: 350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409

Query: 344 LNLRQNNLNGSIP-NSITNMRSLIELQLGGNQLSGTIPMMPPRLQ--IALNLSSNLFEG- 399
           L+L  N +   +       + ++ E+ L  N+           +     L L     +  
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469

Query: 400 -PIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVSV 458
              P+ F  L  L +LDLSNN  +     +L  +  L  L L +N L+ +    +    +
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529

Query: 459 DTTGNLK 465
                L 
Sbjct: 530 YFLKGLS 536

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  239 bits (613), Expect = 9e-69
 Identities = 103/458 (22%), Positives = 165/458 (36%), Gaps = 54/458 (11%)

Query: 10  LKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFN 67
           + +LN + N+L  LP   F  ++ L  LD   N ++        +L  LK LNL  N+ +
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 68  GFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSK 127
                       L EL L  N+            +NL  +DLS N LS +      +L  
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146

Query: 128 LEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGV 187
           L+ L+LS N +       L      S                    L+ L+LS N++   
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSS--------------------LKKLELSSNQIKEF 186

Query: 188 IPIDLLSHPNLQTIDLSVNMLEGSLPQNMS-----PNLVRLRLGTNLLIGEIPSATFTSL 242
            P    +   L  + L+   L  SL + +       ++  L L  + L     + TF  L
Sbjct: 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST-TSNTTFLGL 245

Query: 243 E--KLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQL 300
           +   LT L+L  N+   +          L    L  N +       L  L  ++ +NL+ 
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

Query: 301 NKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSIT 360
           +                +  +IS  SL          L  L +LN+  N++ G   N  T
Sbjct: 306 S---------------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 350

Query: 361 NMRSLIELQLGGNQLSGTIP-------MMPPRLQIALNLSSNLFEGPIPTTFARLNGLEV 413
            + +L  L L  +  S           +    L I LNL+ N         F+ L  LEV
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI-LNLTKNKISKIESDAFSWLGHLEV 409

Query: 414 LDLSNNRFSGEIP-QLLAQMPTLTQLLLTNNQLSGVVP 450
           LDL  N    E+  Q    +  + ++ L+ N+   +  
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  212 bits (543), Expect = 4e-59
 Identities = 95/423 (22%), Positives = 155/423 (36%), Gaps = 35/423 (8%)

Query: 10  LKLLNFSKNELVSLP--TFNG--FAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNK 65
           ++ L+ S ++L +    TF G  +  L +LD S NNLN   N  F  L  L+   L  N 
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283

Query: 66  FNGFLPINLGKTKALEELVLSGN---------AFHGEIPKGIADYRNLTLIDLSANNLSG 116
                  +L     +  L L  +         +            + L  +++  N++ G
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343

Query: 117 SVPDRIGELSKLEVLILSANNLDGRLPTSLA----SITTLSRFAANQNKFSGSVPGGIT- 171
              +    L  L+ L LS +    R  T+      + + L      +NK S       + 
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403

Query: 172 -RFLRNLDLSYNKLLGVIPIDLLSH-PNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGT 227
              L  LDL  N++   +         N+  I LS N        + +  P+L RL L  
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463

Query: 228 NLL--IGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELN----- 280
             L  +   PS  F  L  LT L+L NN+   +    L     L +L+L  N L      
Sbjct: 464 VALKNVDSSPSP-FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 522

Query: 281 ---GSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSN 337
              G     L  L  L ++NL+ N         F  L  L  +++  N+L+    S  +N
Sbjct: 523 ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582

Query: 338 LTNLVNLNLRQNNLNGSIPNSI-TNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNL 396
             +L +LNL++N +            R+L EL +  N    T   +   +   +N +   
Sbjct: 583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW-INETHTN 641

Query: 397 FEG 399
              
Sbjct: 642 IPE 644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  211 bits (539), Expect = 1e-58
 Identities = 84/401 (20%), Positives = 143/401 (35%), Gaps = 44/401 (10%)

Query: 54  VSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANN 113
           VS +  + S  K    +P +L     +  L L+ N            Y  LT +D+  N 
Sbjct: 4   VSHEVADCSHLKLTQ-VPDDLPTN--ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 114 LSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGIT-- 171
           +S   P+   +L  L+VL L  N L      + A  T L+      N             
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 172 RFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLI 231
           + L  LDLS+N L        +   NLQ + LS N ++    + +               
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD-------------- 166

Query: 232 GEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLG 291
                    +   L  LEL +N      P    +   L  L L   +L  SL  +L    
Sbjct: 167 -------IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219

Query: 292 I---LQVMNLQLNKLSGEIPSQFSQLKL--LSTMNISWNSLSGSIPSFLSNLTNLVNLNL 346
               ++ ++L  ++LS    + F  LK   L+ +++S+N+L+       + L  L    L
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279

Query: 347 RQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFA 406
             NN+     +S+  + ++  L L  +                 ++S          +F 
Sbjct: 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTK-------------QSISLASLPKIDDFSFQ 326

Query: 407 RLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSG 447
            L  LE L++ +N   G    +   +  L  L L+N+  S 
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  151 bits (384), Expect = 2e-38
 Identities = 55/232 (23%), Positives = 99/232 (42%), Gaps = 12/232 (5%)

Query: 227 TNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQ 286
           ++L + ++P    T++   T L L +N    +          LT L++  N ++   P  
Sbjct: 12  SHLKLTQVPDDLPTNI---TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL 68

Query: 287 LGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNL 346
              L +L+V+NLQ N+LS      F+    L+ +++  NS+     +      NL+ L+L
Sbjct: 69  CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128

Query: 347 RQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMM-----PPRLQIALNLSSNLFEGPI 401
             N L+ +   +   + +L EL L  N++               L+  L LSSN  +   
Sbjct: 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK-LELSSNQIKEFS 187

Query: 402 PTTFARLNGLEVLDLSNNRFSGEIPQLLA---QMPTLTQLLLTNNQLSGVVP 450
           P  F  +  L  L L+N +    + + L       ++  L L+N+QLS    
Sbjct: 188 PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  239 bits (612), Expect = 3e-69
 Identities = 93/462 (20%), Positives = 174/462 (37%), Gaps = 25/462 (5%)

Query: 10  LKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFN 67
           L  L  + N L+ +     +G   L+ L F    ++    +      +L+SL L  N  +
Sbjct: 83  LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS 142

Query: 68  GFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLS-ANNLSGSVPDRIGELS 126
                    T+ L+ L    NA H    + ++  +  T + L+   N    +     + +
Sbjct: 143 SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA 202

Query: 127 KLEVLILSANNLDGRLPTSLA-----SITTLSRFAANQNKFSGSVPGGITRF-LRNLDLS 180
             + L          +   L      S+   +    +    S +V  G+    + +++L 
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262

Query: 181 YNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEIPSAT 238
            +    +          LQ +DL+   L   LP  +     L +L L  N     +   +
Sbjct: 263 KHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK-FENLCQIS 320

Query: 239 FTSLEKLTYLELDNNSFTGMI-PQQLGSCRSLTLLNLAQNELNGS--LPIQLGSLGILQV 295
            ++   LT+L +  N+    +    L +  +L  L+L+ +++  S    +QL +L  LQ 
Sbjct: 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380

Query: 296 MNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIP-SFLSNLTNLVNLNLRQNNLNGS 354
           +NL  N+        F +   L  +++++  L      S   NL  L  LNL  + L+ S
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440

Query: 355 IPNSITNMRSLIELQLGGNQLSGTIPMMP------PRLQIALNLSSNLFEGPIPTTFARL 408
                  + +L  L L GN                 RL+I L LS           F  L
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI-LVLSFCDLSSIDQHAFTSL 499

Query: 409 NGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVP 450
             +  +DLS+NR +    + L+ +  +  L L +N +S ++P
Sbjct: 500 KMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILP 540

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  220 bits (562), Expect = 3e-62
 Identities = 89/456 (19%), Positives = 161/456 (35%), Gaps = 39/456 (8%)

Query: 10  LKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFN 67
            + L FS N L ++   TF+    L  LD +   +       F     L +L L+ N   
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 68  GFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSK 127
                 L   KAL+ L              + + + L  + L +N++S     +     K
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154

Query: 128 LEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGV 187
           L+VL    N +       ++S+   +                      +L+L+ N +   
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSLQQAT--------------------NLSLNLNGNDI-AG 193

Query: 188 IPIDLLSHPNLQTIDLSVNMLEGSLPQNMS----PNLVRLRLGTNLLIGEIPSATFTSLE 243
           I          Q+++         + + +      +L       ++   +I  A F  L 
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE-DMDDEDISPAVFEGLC 252

Query: 244 K--LTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLN 301
           +  +  + L  + F  +          L  L+L    L+  LP  L  L  L+ + L  N
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSAN 311

Query: 302 KLSGEIPSQFSQLKLLSTMNISWNSLSGSIPS-FLSNLTNLVNLNLRQNNLNGS--IPNS 358
           K         S    L+ ++I  N+    + +  L NL NL  L+L  +++  S      
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371

Query: 359 ITNMRSLIELQLGGNQLSGTIPMMP---PRLQIALNLSSNLFEG-PIPTTFARLNGLEVL 414
           + N+  L  L L  N+            P+L++ L+L+    +     + F  L+ L+VL
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL-LDLAFTRLKVKDAQSPFQNLHLLKVL 430

Query: 415 DLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVP 450
           +LS++       QL   +P L  L L  N       
Sbjct: 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  211 bits (540), Expect = 2e-59
 Identities = 91/433 (21%), Positives = 155/433 (35%), Gaps = 21/433 (4%)

Query: 10  LKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLK--SLNLSKNK 65
           L+ L    N + S+          L+VLDF +N ++         L      SLNL+ N 
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 66  FNGFLPINLGKTKALEELVLSGNAFHGEIPKGIA--DYRNLTLIDLSANNLSGSVPDRIG 123
             G +      +   + L   G      I KG+     ++L L      +     P    
Sbjct: 191 IAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 124 ELSK--LEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGIT--RFLRNLDL 179
            L +  +E + L  +        +    + L          S  +P G+     L+ L L
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVL 308

Query: 180 SYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNM---SPNLVRLRLGTNLLIG-EIP 235
           S NK   +  I   + P+L  + +  N     L         NL  L L  + +   +  
Sbjct: 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368

Query: 236 SATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLP-IQLGSLGILQ 294
           +    +L  L  L L  N    +  +    C  L LL+LA   L          +L +L+
Sbjct: 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428

Query: 295 VMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSI---PSFLSNLTNLVNLNLRQNNL 351
           V+NL  + L       F  L  L  +N+  N          + L  L  L  L L   +L
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488

Query: 352 NGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQ-IALNLSSNLFEGPIPTTFARLNG 410
           +    ++ T+++ +  + L  N+L+ +       L+ I LNL+SN     +P+    L+ 
Sbjct: 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQ 548

Query: 411 LEVLDLSNNRFSG 423
              ++L  N    
Sbjct: 549 QRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  192 bits (491), Expect = 1e-52
 Identities = 80/438 (18%), Positives = 141/438 (32%), Gaps = 30/438 (6%)

Query: 33  EVLDFSSNNLN---GNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNA 89
           +  +  +  LN   G +        S + L  S N           +   L  L L+   
Sbjct: 15  KTYNCENLGLNEIPGTL------PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ 68

Query: 90  FHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASI 149
            +            L  + L+AN L       +     L+ L      +       L + 
Sbjct: 69  IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ 128

Query: 150 TTLSRFAANQNKFSGSVPGGITRF--LRNLDLSYNKLLGVIPIDL--LSHPNLQTIDLSV 205
            TL       N  S            L+ LD   N +  +   D+  L      +++L+ 
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 206 NMLEGSLPQNM--SPNLVRLRLGTNLLIGEIPSA-TFTSLEKLTYLELDNNSFTGMIPQQ 262
           N +   +      S     L  G    +  I      ++++ L     ++     + P  
Sbjct: 189 NDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247

Query: 263 LGSCRSLTL--LNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTM 320
                 +++  +NL ++               LQ ++L    LS E+PS    L  L  +
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKL 306

Query: 321 NISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSI-PNSITNMRSLIELQLGGNQLSGTI 379
            +S N          SN  +L +L+++ N     +    + N+ +L EL L  + +  T 
Sbjct: 307 VLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE-TS 365

Query: 380 PMMP------PRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQ-LLAQM 432
                       LQ  LNLS N         F     LE+LDL+  R   +  Q     +
Sbjct: 366 DCCNLQLRNLSHLQS-LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424

Query: 433 PTLTQLLLTNNQLSGVVP 450
             L  L L+++ L     
Sbjct: 425 HLLKVLNLSHSLLDISSE 442

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  173 bits (440), Expect = 7e-46
 Identities = 86/366 (23%), Positives = 144/366 (39%), Gaps = 22/366 (6%)

Query: 10  LKLLNFSKNELVSLP----TFNGFAGLEVLDFSSNNLNGNINLQFDEL--VSLKSLNLSK 63
            + LNF   + + +       +    L +  F   +        F+ L  +S++S+NL K
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263

Query: 64  NKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIG 123
           + F             L+EL L+      E+P G+     L  + LSAN           
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISAS 322

Query: 124 ELSKLEVLILSANNLDGRLPTS----LASITTLSRFAANQNKFSGSVPGGIT--RFLRNL 177
               L  L +  N     L T     L ++  L   + +  + S      +     L++L
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELD-LSHDDIETSDCCNLQLRNLSHLQSL 381

Query: 178 DLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQN---MSPNLVRLRLGTNLLIGEI 234
           +LSYN+ L +        P L+ +DL+   L+    Q+       L  L L  +LL    
Sbjct: 382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI-S 440

Query: 235 PSATFTSLEKLTYLELDNNSFTGMIPQQLGS---CRSLTLLNLAQNELNGSLPIQLGSLG 291
               F  L  L +L L  N F     Q+  S      L +L L+  +L+        SL 
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500

Query: 292 ILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNL 351
           ++  ++L  N+L+       S LK +  +N++ N +S  +PS L  L+    +NLRQN L
Sbjct: 501 MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

Query: 352 NGSIPN 357
           + +  N
Sbjct: 560 DCTCSN 565

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  133 bits (336), Expect = 1e-32
 Identities = 49/287 (17%), Positives = 90/287 (31%), Gaps = 33/287 (11%)

Query: 199 QTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGM 258
           +T +     L   +P  +  +   L    N+ +  I + TF+ L  LT+L+L       +
Sbjct: 15  KTYNCENLGLN-EIPGTLPNSTECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 259 IPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLS 318
                 S   L  L L  N L       L     L+ +      +S          K L 
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 319 TMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSL--IELQLGGNQLS 376
           ++ +  N +S            L  L+ + N ++      +++++    + L L GN ++
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192

Query: 377 GTIP--------------------MMPPRLQIA-------LNLSSNLFEGPIPTTFARLN 409
           G  P                    ++   L+ +               E   P  F  L 
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252

Query: 410 GL--EVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSK 454
            +  E ++L  + F             L +L LT   LS +      
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVG 299

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  122 bits (308), Expect = 4e-29
 Identities = 68/332 (20%), Positives = 107/332 (32%), Gaps = 53/332 (15%)

Query: 3   SCGGIDGLKLLNFSKNELVSLPTFNGFAG---LEVLDFSSNNLN--GNINLQFDELVSLK 57
           S      L  L+   N                L  LD S +++      NLQ   L  L+
Sbjct: 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379

Query: 58  SLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGI-ADYRNLTLIDLSANNLSG 116
           SLNLS N+          +   LE L L+      +  +    +   L +++LS + L  
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439

Query: 117 SVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRN 176
           S       L  L+ L L  N+          S+ TL R                   L  
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR-------------------LEI 480

Query: 177 LDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPS 236
           L LS+  L  +      S   +  +DLS N L                            
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS-----------------------SSI 517

Query: 237 ATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVM 296
              + L+ + YL L +N  + ++P  L        +NL QN L+ +       +  L+  
Sbjct: 518 EALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN----IYFLEWY 572

Query: 297 NLQLNKLSGEIPSQFSQLKLLSTMNISWNSLS 328
              + KL     +      LL  + +S  +LS
Sbjct: 573 KENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  236 bits (605), Expect = 2e-68
 Identities = 103/469 (21%), Positives = 164/469 (34%), Gaps = 35/469 (7%)

Query: 10  LKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFN 67
           L  L  + N + SL    F+G + L+ L     NL    N     L +LK LN++ N   
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 68  GF-LPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTL----IDLSANNLSGSVPDRI 122
            F LP        LE L LS N         +     + L    +DLS N ++   P   
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 123 GELSKLEVLILSANNLDGRLP-TSLASITTLSRFAANQNKFSGS-----VPGGITRFLRN 176
            E+  L  L L  N     +  T +  +  L        +F                L N
Sbjct: 198 KEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 177 LDLSYNKL------LGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLL 230
           L +   +L      L  I        N+ +  L    +E     + +     L L  N  
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL-VNCK 315

Query: 231 IGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELN--GSLPIQLG 288
            G+ P+    SL       L   S  G          SL  L+L++N L+  G       
Sbjct: 316 FGQFPTLKLKSL-----KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 289 SLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIP-SFLSNLTNLVNLNLR 347
               L+ ++L  N +   + S F  L+ L  ++   ++L      S   +L NL+ L++ 
Sbjct: 371 GTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 348 QNNLNGSIPNSITNMRSLIELQLGGNQLSGTIP----MMPPRLQIALNLSSNLFEGPIPT 403
             +   +       + SL  L++ GN                L   L+LS    E   PT
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF-LDLSQCQLEQLSPT 488

Query: 404 TFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKF 452
            F  L+ L+VL++S+N F          + +L  L  + N +     + 
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  232 bits (593), Expect = 1e-66
 Identities = 91/480 (18%), Positives = 157/480 (32%), Gaps = 46/480 (9%)

Query: 14  NFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPIN 73
              +     +P  N     + LD S N L    +  F     L+ L+LS+ +        
Sbjct: 13  QCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71

Query: 74  LGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLIL 133
                 L  L+L+GN          +   +L  +     NL+      IG L  L+ L +
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 134 SANNLDG-RLPTSLASITTLSRFAANQNKFSGSVPGGI------TRFLRNLDLSYNKLLG 186
           + N +   +LP   +++T L     + NK        +           +LDLS N +  
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 187 VIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNL-----VRLRLGTNLLIGEIPSATFTS 241
           + P        L  + L  N    ++ +     L      RL LG     G +     ++
Sbjct: 192 IQP-GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 242 LEKLTYLELDNNS------FTGMIPQQLGSCRSLTLLNLAQNELNGSLPI---------- 285
           LE L  L ++         +   I        +++  +L    +                
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310

Query: 286 -------QLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLS--GSIPSFLS 336
                  Q  +L +  +  L      G        L  L  +++S N LS  G       
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 337 NLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMP----PRLQIALNL 392
             T+L  L+L  N +   + ++   +  L  L    + L              L   L++
Sbjct: 371 GTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY-LDI 428

Query: 393 SSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEI-PQLLAQMPTLTQLLLTNNQLSGVVPK 451
           S           F  L+ LEVL ++ N F     P +  ++  LT L L+  QL  + P 
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  204 bits (521), Expect = 1e-56
 Identities = 89/476 (18%), Positives = 148/476 (31%), Gaps = 43/476 (9%)

Query: 2   QSCGGIDGLKLLNFSKNELVSLP--TFNGFAGLEV----LDFSSNNLNGNINLQFDELVS 55
           +    +  L+ L+ S N++ S+          + +    LD S N +N      F E+  
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-R 201

Query: 56  LKSLNLSKNKFNGFLPINLGKT-KALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNL 114
           L  L L  N  +  +     +    LE   L    F  E                   NL
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE------------------GNL 243

Query: 115 SGSVPDRIGELSKLEVLILSANNLD---GRLPTSLASITTLSRFAANQNKFSGSVPGGIT 171
                  +  L  L +       LD     +      +T +S F+               
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303

Query: 172 RFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTN-LL 230
              ++L+L   K      + L S   L     + N    +  +   P+L  L L  N L 
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRL---TFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 360

Query: 231 IGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQ-LGS 289
                S +      L YL+L  N     +         L  L+   + L          S
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419

Query: 290 LGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSI-PSFLSNLTNLVNLNLRQ 348
           L  L  +++            F+ L  L  + ++ NS   +  P   + L NL  L+L Q
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 349 NNLNGSIPNSITNMRSLIELQLGGNQLSGTIP---MMPPRLQIALNLSSNLFEGPIPTTF 405
             L    P +  ++ SL  L +  N               LQ+ L+ S N          
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV-LDYSLNHIMTSKKQEL 538

Query: 406 ARL-NGLEVLDLSNNRFSGEIPQ--LLAQMPTLTQLLLTNNQLSGVVPKFSKWVSV 458
               + L  L+L+ N F+        L  +    QLL+   ++    P   + + V
Sbjct: 539 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPV 594

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  179 bits (455), Expect = 7e-48
 Identities = 71/380 (18%), Positives = 125/380 (32%), Gaps = 47/380 (12%)

Query: 7   IDGLKLLNFSKNELVSLP--------TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKS 58
           ++GL  L   +  L  L          FN    +      S  +    +  +      + 
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQH 308

Query: 59  LNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLS--G 116
           L L   KF  F  + L   K L      G            D  +L  +DLS N LS  G
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 117 SVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRN 176
                    + L+ L LS N +   + ++   +  L                        
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEH---------------------- 400

Query: 177 LDLSYNKLLGVIPIDLLSH-PNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGE 233
           LD  ++ L  +    +     NL  +D+S      +     +   +L  L++  N     
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 234 IPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGIL 293
                FT L  LT+L+L       + P    S  SL +LN++ N            L  L
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520

Query: 294 QVMNLQLNKLSGEIPSQFSQL-KLLSTMNISWNSLSGSIPS--FLSNLTNLVNLNLRQNN 350
           QV++  LN +      +       L+ +N++ N  + +     FL  + +   L +    
Sbjct: 521 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 580

Query: 351 LNGSIPNSITNMRSLIELQL 370
           +  + P+    M  ++ L +
Sbjct: 581 MECATPSDKQGM-PVLSLNI 599

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  128 bits (325), Expect = 3e-31
 Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 15/222 (6%)

Query: 242 LEKLTYLELD--NNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQ 299
           +E +  +       +F   IP  L    S   L+L+ N L         S   LQV++L 
Sbjct: 4   VEVVPNITYQCMELNFYK-IPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLS 60

Query: 300 LNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSI 359
             ++       +  L  LST+ ++ N +        S L++L  L   + NL       I
Sbjct: 61  RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120

Query: 360 TNMRSLIELQLGGNQLSGTIPMMP----PRLQIALNLSSNLFEGPIPTTFARLNGLEV-- 413
            ++++L EL +  N +              L+  L+LSSN  +    T    L+ + +  
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH-LDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 414 --LDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFS 453
             LDLS N  +   P    ++  L +L L NN  S  V K  
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTC 220

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  107 bits (268), Expect = 4e-24
 Identities = 45/212 (21%), Positives = 87/212 (41%), Gaps = 10/212 (4%)

Query: 2   QSCGGIDGLKLLNFSKNELVSLP---TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKS 58
            +  G++ L+ L+F  + L  +     F     L  LD S  +     N  F+ L SL+ 
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 59  LNLSKNKFNG-FLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGS 117
           L ++ N F   FLP    + + L  L LS        P       +L ++++S NN    
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 118 VPDRIGELSKLEVLILSANNLDGRLPTSLASI-TTLSRFAANQNKFSGSVP-GGITRFLR 175
                  L+ L+VL  S N++       L    ++L+     QN F+ +       ++++
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 569

Query: 176 N---LDLSYNKLLGVIPIDLLSHPNLQTIDLS 204
           +   L +   ++    P D    P + +++++
Sbjct: 570 DQRQLLVEVERMECATPSDKQGMP-VLSLNIT 600

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  236 bits (604), Expect = 6e-68
 Identities = 79/489 (16%), Positives = 153/489 (31%), Gaps = 56/489 (11%)

Query: 10  LKLLNFSKNELVSLPTFNGFAG------LEVLDFSSNNLNGNI--NLQFDELVSLKSLNL 61
           L++L    +         G  G       E       +           ++   L    +
Sbjct: 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166

Query: 62  SKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDR 121
           + +     +  +   T    ++    N     + K +     L    +  +         
Sbjct: 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICE 225

Query: 122 IGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRF--LRNLDL 179
             E    E                  ++  L+            +P  +     ++ +++
Sbjct: 226 AWENENSEY-----AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280

Query: 180 SYNKLLGV--------IPIDLLSHPNLQTIDLSVNML-EGSLPQNMS--PNLVRLRLGTN 228
           + N+ +             D      +Q I +  N L    +  ++     L  L    N
Sbjct: 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340

Query: 229 LLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNG-SLPIQL 287
            L G++P+  F S  KL  L L  N  T +     G    +  L+ A N+L         
Sbjct: 341 QLEGKLPA--FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398

Query: 288 GSLGILQVMNLQLNKLSG-------EIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTN 340
            S+ ++  ++   N++          +     +   +S++N+S N +S       S  + 
Sbjct: 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP 458

Query: 341 LVNLNLRQNNLNG-------SIPNSITNMRSLIELQLGGNQLSGTIPMMP----PRLQIA 389
           L ++NL  N L             +  N   L  + L  N+L+           P L   
Sbjct: 459 LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVG- 517

Query: 390 LNLSSNLFEGPIPTTFARLNGLEVLDLSN------NRFSGEIPQLLAQMPTLTQLLLTNN 443
           ++LS N F    PT     + L+   + N      NR   E P+ +   P+LTQL + +N
Sbjct: 518 IDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576

Query: 444 QLSGVVPKF 452
            +  V  K 
Sbjct: 577 DIRKVNEKI 585

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  223 bits (571), Expect = 2e-63
 Identities = 69/462 (14%), Positives = 151/462 (32%), Gaps = 43/462 (9%)

Query: 32  LEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNG----FLPINLGKTKALEELVLSG 87
           +  L       +G +     +L  L+ L L  +        F P  +    + E+     
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 88  NAFHGEIPKGIA--DYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTS 145
             +           D+ +L    ++++    S+        K   +   +NN+   +  +
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA 201

Query: 146 LASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSV 205
           +  +T L +F    + F             N +  Y +      +   +  +L  +++  
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENI---CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN 258

Query: 206 NMLEGSLPQNMS--PNLVRLRLGTNLLIG--EIPS-----ATFTSLEKLTYLELDNNSF- 255
                 LP  +   P +  + +  N  I   ++       A     EK+  + +  N+  
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318

Query: 256 TGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLK 315
           T  +   L   + L +L    N+L G LP   GS   L  +NL  N+++    +     +
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTE 377

Query: 316 LLSTMNISWNSLSGSIPS--FLSNLTNLVNLNLRQNNLNG-------SIPNSITNMRSLI 366
            +  ++ + N L   IP+     +++ +  ++   N +          +  +     ++ 
Sbjct: 378 QVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436

Query: 367 ELQLGGNQLSGTIP---MMPPRLQIALNLSSNLFEG-------PIPTTFARLNGLEVLDL 416
            + L  NQ+S            L   +NL  N+               F     L  +DL
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSS-INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 417 SNNRFSGEIPQL-LAQMPTLTQLLLTNNQLSGVVPKFSKWVS 457
             N+ +          +P L  + L+ N  S    +     +
Sbjct: 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSST 537

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  217 bits (554), Expect = 6e-61
 Identities = 70/448 (15%), Positives = 150/448 (33%), Gaps = 47/448 (10%)

Query: 10  LKLLNFSKNELVSLP-TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNG 68
              +    N +  +         L      ++        +       ++ N    +   
Sbjct: 185 DTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEA-----WENENSEYAQQYK 239

Query: 69  FLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNL--------SGSVPD 120
              +     K L ++ +       ++P  +     + LI+++ N                
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299

Query: 121 RIGELSKLEVLILSANNL-DGRLPTSLASITTLSRFAANQNKFSGSVP--GGITRFLRNL 177
                 K++++ +  NNL    + TSL  +  L       N+  G +P  G   + L +L
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIK-LASL 358

Query: 178 DLSYNKLLGVIPIDLLSH-PNLQTIDLSVNMLEGSLPQNMS----PNLVRLRLGTNLLIG 232
           +L+YN++   IP +       ++ +  + N L+  +P          +  +    N +  
Sbjct: 359 NLAYNQITE-IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS 416

Query: 233 EIP------SATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNG----- 281
                      T      ++ + L NN  +    +   +   L+ +NL  N L       
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476

Query: 282 --SLPIQLGSLGILQVMNLQLNKLSGEIPS-QFSQLKLLSTMNISWNSLSGSIPSFLSNL 338
                    +  +L  ++L+ NKL+      + + L  L  +++S+NS S   P+   N 
Sbjct: 477 LKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNS 535

Query: 339 TNLVNLNLRQ------NNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNL 392
           + L    +R       N      P  IT   SL +LQ+G N +      + P + + L++
Sbjct: 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISV-LDI 594

Query: 393 SSNLFEGPIPTTFARLNGLEVLDLSNNR 420
             N       +         +  L  ++
Sbjct: 595 KDNPNISIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  215 bits (550), Expect = 2e-60
 Identities = 63/455 (13%), Positives = 148/455 (32%), Gaps = 46/455 (10%)

Query: 38  SSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHG----E 93
             +       +  +    +  L+L     +G +P  +G+   LE L L  +         
Sbjct: 65  ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

Query: 94  IPKGIADYRNLTLIDLSANNLSGSVPDRIG--ELSKLEVLILSANNLDGRLPTSLASITT 151
            PKGI+   +         +   +  D     + S L    ++++     +  S      
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184

Query: 152 LSRFAANQNKFSGSVPGGITRF--LRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLE 209
            ++     N  +  V   + R   LR   +  +  +     +   + N +          
Sbjct: 185 DTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY----- 238

Query: 210 GSLPQNMS--PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGM--------I 259
            +         +L  + +     + ++P+    +L ++  + +  N              
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQLKDDWQA 297

Query: 260 PQQLGSCRSLTLLNLAQNEL-NGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLS 318
                    + ++ +  N L    +   L  +  L ++    N+L G++P+ F     L+
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLA 356

Query: 319 TMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPN--SITNMRSLIELQLGGNQLS 376
           ++N+++N ++    +F      + NL+   N L   IPN     ++  +  +    N++ 
Sbjct: 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIG 415

Query: 377 GTIPMMPPRLQIA---------LNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSG---- 423
                    L            +NLS+N         F+  + L  ++L  N  +     
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475

Query: 424 ---EIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKW 455
              +  +       LT + L  N+L+ +   F   
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  193 bits (492), Expect = 1e-52
 Identities = 54/401 (13%), Positives = 132/401 (32%), Gaps = 39/401 (9%)

Query: 10  LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKF--- 66
            +   +++        ++    L  ++  +      +      L  ++ +N++ N+    
Sbjct: 229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288

Query: 67  -----NGFLPINLGKTKALEELVLSGNAF-HGEIPKGIADYRNLTLIDLSANNLSGSVPD 120
                +     +    + ++ + +  N      +   +   + L +++   N L G +P 
Sbjct: 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA 348

Query: 121 RIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNL--- 177
             G   KL  L L+ N +             +   +   NK          + +  +   
Sbjct: 349 -FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAI 407

Query: 178 DLSYNKLLGV-------IPIDLLSHPNLQTIDLSVNMLEGSLPQ--NMSPNLVRLRLGTN 228
           D SYN++  V       +        N+ +I+LS N +     +  +    L  + L  N
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467

Query: 229 LL------IGEIPSATFTSLEKLTYLELDNNSFTGMIPQ-QLGSCRSLTLLNLAQNELNG 281
           +L        +  +  F +   LT ++L  N  T +    +  +   L  ++L+ N  + 
Sbjct: 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK 527

Query: 282 SLPIQLGSLGILQVMNLQ------LNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFL 335
             P Q  +   L+   ++       N+   E P   +    L+ + I  N +        
Sbjct: 528 -FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT 586

Query: 336 SNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLS 376
            N++    L+++ N       + +          L  ++  
Sbjct: 587 PNIS---VLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  147 bits (374), Expect = 3e-37
 Identities = 30/240 (12%), Positives = 68/240 (28%), Gaps = 10/240 (4%)

Query: 232 GEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNG----SLPIQL 287
           G  P  +  S  ++T L L+    +G +P  +G    L +L L  +          P  +
Sbjct: 70  GAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGI 129

Query: 288 GSLGILQVMNLQLNKLSGEIPSQFSQLKL--LSTMNISWNSLSGSIPSFLSNLTNLVNLN 345
            +    +                  +     L    I+ +    SI            + 
Sbjct: 130 SANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG 189

Query: 346 LRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTF 405
              NN+   +  ++  +  L +  +G +                 N             +
Sbjct: 190 QLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENI---CEAWENENSEYAQQYKTEDLKW 245

Query: 406 ARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVSVDTTGNLK 465
             L  L  +++ N     ++P  L  +P +  + +  N+          W ++      +
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  128 bits (323), Expect = 7e-31
 Identities = 60/286 (20%), Positives = 103/286 (36%), Gaps = 42/286 (14%)

Query: 4   CGGIDGLKLLNFSKNELVSLPTFNGFAG---LEVLDFSSNNLNGNINLQFDE-------L 53
           CG  + ++ L+F+ N+L  +P          +  +DFS N +       FD         
Sbjct: 373 CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432

Query: 54  VSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHG-------EIPKGIADYRNLTL 106
           +++ S+NLS N+ + F          L  + L GN           +  +   +   LT 
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS 492

Query: 107 IDLSANNLSGSVPD-RIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGS 165
           IDL  N L+    D R   L  L  + LS N+     PT   + +TL  F          
Sbjct: 493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRN------ 545

Query: 166 VPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRL 225
                       D   N+ L   P  +   P+L  + +  N +   + + ++PN+  L +
Sbjct: 546 ----------QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKITPNISVLDI 594

Query: 226 GTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTL 271
             N  I    S     +E   Y+   +        Q +  C +L +
Sbjct: 595 KDNPNISIDLSYVCPYIEAGMYMLFYDK------TQDIRGCDALDI 634

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 79.7 bits (197), Expect = 1e-15
 Identities = 19/138 (13%), Positives = 43/138 (31%), Gaps = 8/138 (5%)

Query: 319 TMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGT 378
             N   +         L++   +  L+L     +G +P++I  +  L  L LG +     
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 379 IPMMPP------RLQIALNLSSNLFEGPIPTTFARLN--GLEVLDLSNNRFSGEIPQLLA 430
             +  P                  ++        R +   L    ++++     I +   
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180

Query: 431 QMPTLTQLLLTNNQLSGV 448
                TQ+   +N ++ V
Sbjct: 181 ITLKDTQIGQLSNNITFV 198

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  218 bits (558), Expect = 7e-65
 Identities = 73/299 (24%), Positives = 115/299 (38%), Gaps = 32/299 (10%)

Query: 176 NLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIP 235
             D      LGV+         +  +DLS   L    P                    IP
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP--------------------IP 69

Query: 236 SATFTSLEKLTYLEL-DNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQ 294
           S+   +L  L +L +   N+  G IP  +     L  L +    ++G++P  L  +  L 
Sbjct: 70  SS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128

Query: 295 VMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVN-LNLRQNNLNG 353
            ++   N LSG +P   S L  L  +    N +SG+IP    + + L   + + +N L G
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188

Query: 354 SIPNSITNMRSLIELQLGGNQLSGTIPM---MPPRLQIALNLSSNLFEGPIPTTFARLNG 410
            IP +  N+ +L  + L  N L G   +        Q  ++L+ N     +         
Sbjct: 189 KIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQK-IHLAKNSLAFDLG-KVGLSKN 245

Query: 411 LEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVP---KFSKWVSVDTTGNLKL 466
           L  LDL NNR  G +PQ L Q+  L  L ++ N L G +P      ++       N  L
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  191 bits (488), Expect = 5e-55
 Identities = 79/328 (24%), Positives = 120/328 (36%), Gaps = 74/328 (22%)

Query: 32  LEVLDFSSNNLNG--NINLQFDELVSLKSLNLSK-NKFNGFLPINLGKTKALEELVLSGN 88
           +  LD S  NL     I      L  L  L +   N   G +P  + K   L  L ++  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 89  AFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLAS 148
              G IP  ++  + L  +D S N LSG++P  I  L  L  +    N + G +P S  S
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 149 ITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNML 208
            + L                        + +S N+L G IP    ++ NL  +DLS NML
Sbjct: 172 FSKLFTS---------------------MTISRNRLTGKIPPT-FANLNLAFVDLSRNML 209

Query: 209 EGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRS 268
           EG                                                     GS ++
Sbjct: 210 EGD-----------------------------------------------ASVLFGSDKN 222

Query: 269 LTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLS 328
              ++LA+N L   L  ++G    L  ++L+ N++ G +P   +QLK L ++N+S+N+L 
Sbjct: 223 TQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 329 GSIPSFLSNLTNLVNLNLRQNNLNGSIP 356
           G IP    NL          N      P
Sbjct: 282 GEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  125 bits (316), Expect = 1e-31
 Identities = 48/185 (25%), Positives = 75/185 (40%), Gaps = 6/185 (3%)

Query: 10  LKLLNFSKNELV-SLPT-FNGFAGLEVLDFSSNNLNGNINLQFDELVSL-KSLNLSKNKF 66
           L  L+FS N L  +LP   +    L  + F  N ++G I   +     L  S+ +S+N+ 
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186

Query: 67  NGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELS 126
            G +P        L  + LS N   G+        +N   I L+ N+L+  +   +G   
Sbjct: 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK 244

Query: 127 KLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVP-GGITRFLRNLDLSYNKLL 185
            L  L L  N + G LP  L  +  L     + N   G +P GG  +       + NK L
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304

Query: 186 GVIPI 190
              P+
Sbjct: 305 CGSPL 309

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  224 bits (572), Expect = 1e-63
 Identities = 91/468 (19%), Positives = 163/468 (34%), Gaps = 34/468 (7%)

Query: 10  LKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFN 67
           L  L  + N + S    +F+G   LE L      L    +    +L++LK LN++ N  +
Sbjct: 82  LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141

Query: 68  GF-LPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTL----IDLSANNLSGSVPDRI 122
              LP        L  + LS N         +   R        +D+S N +   + D+ 
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQA 200

Query: 123 GELSKLEVLILSANNLDGRLP-TSLASITTLSRFAANQNKFSG-----SVPGGITRFLRN 176
            +  KL  L L  N     +  T L ++  L        +F            I   L +
Sbjct: 201 FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260

Query: 177 -----LDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLI 231
                  L+Y        +      N+  + L+   ++             L +     +
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQ-L 319

Query: 232 GEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLG 291
            + P      L  L  L L  N  +  I  +  +  SL+ L+L++N L+ S       LG
Sbjct: 320 KQFP---TLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374

Query: 292 I--LQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIP-SFLSNLTNLVNLNLRQ 348
              L+ ++L  N     + + F  L+ L  ++   ++L      S   +L  L+ L++  
Sbjct: 375 TNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433

Query: 349 NNLNGSIPNSITNMRSLIELQLGGNQLSGTIP----MMPPRLQIALNLSSNLFEGPIPTT 404
            N           + SL  L++ GN                L   L+LS    E      
Sbjct: 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF-LDLSKCQLEQISWGV 492

Query: 405 FARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKF 452
           F  L+ L++L++S+N           Q+ +L+ L  + N++       
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  204 bits (521), Expect = 1e-56
 Identities = 87/481 (18%), Positives = 160/481 (33%), Gaps = 49/481 (10%)

Query: 13  LNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPI 72
                 +L  +P  +  +  + +D S N L    +  F     L+ L+LS+ +       
Sbjct: 16  YQCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK 74

Query: 73  NLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLI 132
                  L  L+L+GN      P   +   +L  +      L+      IG+L  L+ L 
Sbjct: 75  AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134

Query: 133 LSANNLDG-RLPTSLASITTLSRFAANQNKFSGSVPG------GITRFLRNLDLSYNKLL 185
           ++ N +   +LP   +++T L     + N                 +   +LD+S N  +
Sbjct: 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-I 193

Query: 186 GVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLL--------IGEIPSA 237
             I         L  + L  N    ++ +    NL  L +   +L        +     +
Sbjct: 194 DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253

Query: 238 TFTSLEKLTYLELD--NNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLP----------- 284
               L  +T  E      +       +     +++ ++LA   +                
Sbjct: 254 IMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLS 313

Query: 285 --------IQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLS 336
                        L  L+ + L +NK S  I  +   L  LS +++S N+LS S     S
Sbjct: 314 IIRCQLKQFPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYS 371

Query: 337 NL--TNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMP----PRLQIAL 390
           +L   +L +L+L  N     +  +   +  L  L    + L             +L   L
Sbjct: 372 DLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY-L 429

Query: 391 NLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQ-LLAQMPTLTQLLLTNNQLSGVV 449
           ++S    +      F  L  L  L ++ N F       + A    LT L L+  QL  + 
Sbjct: 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS 489

Query: 450 P 450
            
Sbjct: 490 W 490

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  152 bits (386), Expect = 7e-39
 Identities = 76/431 (17%), Positives = 132/431 (30%), Gaps = 66/431 (15%)

Query: 3   SCGGIDGLKLLNFSKNELVSL-----PTFNGFAGLEVLDFSSNNLNGN-----INLQFDE 52
               + GL +      E            +   GL  +      L          ++F  
Sbjct: 224 CLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHC 283

Query: 53  LVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSAN 112
           L ++ +++L+          ++ K    + L +            +     L  + L+ N
Sbjct: 284 LANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLKQFPTLDL---PFLKSLTLTMN 338

Query: 113 NLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITR 172
               S+  +   L  L  L LS N L      S + + T S                   
Sbjct: 339 KG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS------------------- 377

Query: 173 FLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIG 232
            LR+LDLS+N    ++  + +    LQ +D   + L+     +                 
Sbjct: 378 -LRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFS----------------- 418

Query: 233 EIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQ-LGSLG 291
                 F SLEKL YL++   +             SL  L +A N    +       +  
Sbjct: 419 -----AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473

Query: 292 ILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNL 351
            L  ++L   +L       F  L  L  +N+S N+L     S  + L +L  L+   N +
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533

Query: 352 NGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFA---RL 408
             S        +SL    L  N ++             +             T A    +
Sbjct: 534 ETSKGILQHFPKSLAFFNLTNNSVACICEHQK--FLQWVKEQKQFLVNVEQMTCATPVEM 591

Query: 409 NGLEVLDLSNN 419
           N   VLD +N+
Sbjct: 592 NTSLVLDFNNS 602

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  110 bits (277), Expect = 3e-25
 Identities = 43/227 (18%), Positives = 78/227 (34%), Gaps = 15/227 (6%)

Query: 235 PSATFTSLEKLTYLELD--NNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGI 292
           P +    +E +  +     +   +  +P  + S  S   ++L+ N L         +   
Sbjct: 1   PGSLNPCIEVVPNITYQCMDQKLSK-VPDDIPS--STKNIDLSFNPLKILKSYSFSNFSE 57

Query: 293 LQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLN 352
           LQ ++L   ++       +  L  LS + ++ N +    P   S LT+L NL   +  L 
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 353 GSIPNSITNMRSLIELQLGGNQLSGTIPMMP----PRLQIALNLSSNLFEGPIPTTFARL 408
                 I  + +L +L +  N +              L   ++LS N  +         L
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH-VDLSYNYIQTITVNDLQFL 176

Query: 409 NGL----EVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPK 451
                    LD+S N       Q    +  L +L L  N  S  + K
Sbjct: 177 RENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMK 222

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  217 bits (553), Expect = 2e-59
 Identities = 74/472 (15%), Positives = 148/472 (31%), Gaps = 60/472 (12%)

Query: 10  LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINL------QFDELVSLKSLNLSK 63
           L L +  ++ +   P          +      +    N           L  L+ +  + 
Sbjct: 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN 457

Query: 64  NKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIG 123
           + F              E+        +       ++ ++LT ++L        +PD + 
Sbjct: 458 SPFTYDNI-----AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512

Query: 124 ELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNK 183
           +L +L+ L ++ N          A  T L+       K            ++   + YN 
Sbjct: 513 DLPELQSLNIACNRGIS-AAQLKADWTRLADDEDTGPK------------IQIFYMGYNN 559

Query: 184 LLGVIPIDLLSH-PNLQTIDLSVNMLEGSLP--QNMSPNLVRLRLGTNLLIGEIPSATFT 240
           L        L     L  +D   N +   L         L  L+L  N +  EIP     
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNV-KLTDLKLDYNQIE-EIPEDFCA 616

Query: 241 SLEKLTYLELDNNSFTGMIPQ--QLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNL 298
             +++  L   +N     IP      S   +  ++ + N++         S+   + +N 
Sbjct: 617 FTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675

Query: 299 QL-----NKLSGEIPSQFSQLKLLSTMNISWNSLS-------GSIPSFLSNLTNLVNLNL 346
                  N++       F+    +ST+ +S N ++               N   L  ++L
Sbjct: 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735

Query: 347 RQNNLNGSIPNSI--TNMRSLIELQLGGNQLSGTIP---MMPPRLQI-----ALNLSSNL 396
           R N L  S+ +    T +  L  + +  N  S + P   +   +L+        +   N 
Sbjct: 736 RFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNR 793

Query: 397 FEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGV 448
                PT       L  L + +N    ++ + L   P L  L + +N    +
Sbjct: 794 ILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISI 842

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  200 bits (509), Expect = 1e-53
 Identities = 77/494 (15%), Positives = 157/494 (31%), Gaps = 58/494 (11%)

Query: 3   SCGGIDGLKLLNFSKNELVSL--PTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLN 60
                  +  L+ +                 L+VL F +++   +  L  DE ++     
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 61  LSKNKFNGFLPIN-LGKTKALEELVLSGNAFH-----GEIPKGIADYRNLTLIDLSANNL 114
             K++         L   + L    L  +A +       I K        T I    N +
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437

Query: 115 SGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRF- 173
           +  +   I  L+KL+++  + +       T            ++  K   +     +   
Sbjct: 438 T-FISKAIQRLTKLQIIYFANSPF-----TYDNIAVDWEDANSDYAKQYENEELSWSNLK 491

Query: 174 -LRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS-----------PNLV 221
            L +++L     +  +P  L   P LQ+++++ N    +                 P + 
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551

Query: 222 RLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNG 281
              +G N L     SA+   + KL  L+  +N       +  G+   LT L L  N++  
Sbjct: 552 IFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE- 608

Query: 282 SLPIQLGS-LGILQVMNLQLNKLSGEIPSQFS--QLKLLSTMNISWNSLSGSIPSFLS-- 336
            +P    +    ++ +    NKL   IP+ F+   + ++ +++ S+N +     +     
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667

Query: 337 ---NLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIA---- 389
                 N   + L  N +             +  + L  N ++ +IP    + +      
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKN 726

Query: 390 ------LNLSSNLFEG-PIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQL---- 438
                 ++L  N             L  L  +D+S N FS   P        L       
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRH 785

Query: 439 --LLTNNQLSGVVP 450
                 N++    P
Sbjct: 786 QRDAEGNRILRQWP 799

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  175 bits (446), Expect = 1e-45
 Identities = 60/441 (13%), Positives = 127/441 (28%), Gaps = 52/441 (11%)

Query: 33  EVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHG 92
           E LD  +              ++  + N   + +     ++L     +  L L+G    G
Sbjct: 279 EALDGKNWRYYSGTINNTIHSLNW-NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKG 337

Query: 93  EIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLP-TSLASITT 151
            +P  I     L ++    ++ + S      E    ++     + +        L     
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397

Query: 152 LSRFAANQNKFSGSVPGGITRFLRNLDLSYNKL------LGVIPIDLLSHPNLQTIDLSV 205
           L+     Q+  + +      +    + L   ++      +  I   +     LQ I  + 
Sbjct: 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN 457

Query: 206 NMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGS 265
           +          + +                  ++++L+ LT +EL N      +P  L  
Sbjct: 458 SPFTYDNI---AVDWEDANSDYAKQYENEEL-SWSNLKDLTDVELYNCPNMTQLPDFLYD 513

Query: 266 CRSLTLLNLAQNELNG---------SLPIQLGSLGILQVMNLQLNKLSGEIPSQ-FSQLK 315
              L  LN+A N              L     +   +Q+  +  N L     S    ++ 
Sbjct: 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV 573

Query: 316 LLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSI-TNMRSLIELQLGGNQ 374
            L  ++   N +   + +F      L +L L  N +   IP         +  L    N+
Sbjct: 574 KLGLLDCVHNKVR-HLEAF-GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK 630

Query: 375 LSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPT 434
           L                        P       +  +  +D S N+   E   +   M  
Sbjct: 631 LKYI---------------------PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669

Query: 435 -----LTQLLLTNNQLSGVVP 450
                 + + L+ N++     
Sbjct: 670 YKGINASTVTLSYNEIQKFPT 690

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  129 bits (325), Expect = 9e-31
 Identities = 29/235 (12%), Positives = 77/235 (32%), Gaps = 12/235 (5%)

Query: 230 LIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGS 289
           + G+ P     +  ++T L L      G +P  +G    L +L+   +    S  +    
Sbjct: 310 MWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDE 369

Query: 290 LGILQVMNLQLNKLSGEIPSQF-SQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQ 348
                +   + +++       F    + L+  ++  ++++ +    +  +     ++L+ 
Sbjct: 370 ELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLKD 427

Query: 349 NNLNG------SIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIP 402
             +         I  +I  +  L  +    +  +     +        N           
Sbjct: 428 TQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAV---DWEDANSDYAKQYENEE 484

Query: 403 TTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVS 457
            +++ L  L  ++L N     ++P  L  +P L  L +  N+        + W  
Sbjct: 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  101 bits (254), Expect = 2e-22
 Identities = 36/226 (15%), Positives = 70/226 (30%), Gaps = 25/226 (11%)

Query: 3   SCGGIDGLKLLNFSKNELVSLP-------TFNGFAGLEVLDFSSNNLNGNINLQFDELVS 55
           +   +  +  ++FS N++ S                   +  S N +       F     
Sbjct: 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698

Query: 56  LKSLNLSKNKF-------NGFLPINLGKTKALEELVLSGNAFHGEIPKGIA--DYRNLTL 106
           + ++ LS N               N   T  L  + L  N     +           L+ 
Sbjct: 699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSN 757

Query: 107 IDLSANNLSGSVPDRIGELSKLEVL------ILSANNLDGRLPTSLASITTLSRFAANQN 160
           +D+S N  S S P +    S+L+            N +  + PT + +  +L +     N
Sbjct: 758 MDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816

Query: 161 KFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVN 206
                V   +T  L  LD++ N  + +    +  +       L  +
Sbjct: 817 DIR-KVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYD 861

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  189 bits (483), Expect = 8e-52
 Identities = 93/463 (20%), Positives = 161/463 (34%), Gaps = 35/463 (7%)

Query: 10  LKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFN 67
           L  L  + N + SL    F+G + L+ L     NL    N     L +LK LN++ N   
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 68  GF-LPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTL----IDLSANNLSGSVPDRI 122
            F LP        LE L LS N         +     + L    +DLS N ++  +    
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGA 196

Query: 123 GELSKLEVLILSANNLDGRLP-------TSLASITTLSRFAANQNKFSGSVPGGITRF-- 173
            +  +L  L L  N     +          L     +     N+          +     
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 174 --LRNLDLSYNKLLGVIPIDLLSH-PNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLL 230
             +    L+Y        IDL +   N+ +  L    +E     + +     L L     
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC-- 314

Query: 231 IGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELN--GSLPIQLG 288
             +        L+ L  L   +N              SL  L+L++N L+  G       
Sbjct: 315 --KFGQFPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 289 SLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIP-SFLSNLTNLVNLNLR 347
               L+ ++L  N +   + S F  L+ L  ++   ++L      S   +L NL+ L++ 
Sbjct: 371 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 348 QNNLNGSIPNSITNMRSLIELQLGGNQLSGTIP----MMPPRLQIALNLSSNLFEGPIPT 403
             +   +       + SL  L++ GN                L   L+LS    E   PT
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF-LDLSQCQLEQLSPT 488

Query: 404 TFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLS 446
            F  L+ L+VL++++N+       +  ++ +L ++ L  N   
Sbjct: 489 AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  181 bits (462), Expect = 5e-49
 Identities = 88/490 (17%), Positives = 159/490 (32%), Gaps = 48/490 (9%)

Query: 2   QSCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNL 61
           + C  +         +     +P  N     + LD S N L    +  F     L+ L+L
Sbjct: 1   EPCVEVVPNITYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL 59

Query: 62  SKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDR 121
           S+ +              L  L+L+GN          +   +L  +     NL+      
Sbjct: 60  SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119

Query: 122 IGELSKLEVLILSANNL-DGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRN---- 176
           IG L  L+ L ++ N +   +LP   +++T L     + NK   S+     R L      
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLL 178

Query: 177 ---LDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLL--- 230
              LDLS N  +  I         L  + L  N    ++ +     L  L +   +L   
Sbjct: 179 NLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 231 -----IGEIPSATFTSLEKLTYLELD---NNSFTGMIPQQLGSCRSLTLLNLAQNELNGS 282
                + +   +    L  LT  E      + +   I        +++  +L    +   
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 283 LPIQ-LGSLGILQVMNLQLNKLSGEIPSQFSQLKL----------------LSTMNISWN 325
                      L+++N +  +          +L                  L  +++S N
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357

Query: 326 SLS--GSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPM-- 381
            LS  G         T+L  L+L  N +  ++ ++   +  L  L    + L        
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

Query: 382 --MPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQ-LLAQMPTLTQL 438
                 L   L++S           F  L+ LEVL ++ N F       +  ++  LT L
Sbjct: 417 FLSLRNLIY-LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 439 LLTNNQLSGV 448
            L+  QL  +
Sbjct: 476 DLSQCQLEQL 485

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  149 bits (377), Expect = 5e-38
 Identities = 91/417 (21%), Positives = 150/417 (35%), Gaps = 49/417 (11%)

Query: 10  LKLLNFSKNELVSLP---TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLK----SLNLS 62
           LK LN + N + S      F+    LE LD SSN +          L  +     SL+LS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 63  KNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKG-IADYRNLTLIDL------SANNLS 115
            N  N F+     K   L +L L  N     + K  I     L +  L      +  NL 
Sbjct: 186 LNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 116 GSVPDRIGELSKLEVLILSANNLDG---RLPTSLASITTLSRFAANQNKFSG-------- 164
                 +  L  L +       LD     +      +T +S F+                
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304

Query: 165 -------------SVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGS 211
                          P    + L+ L  + NK         L  P+L+ +DLS N L   
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL--PSLEFLDLSRNGLSFK 362

Query: 212 LPQNMS----PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQ-QLGSC 266
              + S     +L  L L  N +I  + S  F  LE+L +L+  +++   M       S 
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI-TMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 267 RSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQ-FSQLKLLSTMNISWN 325
           R+L  L+++      +       L  L+V+ +  N          F++L+ L+ +++S  
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 326 SLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMM 382
            L    P+  ++L++L  LN+  N L          + SL ++ L  N    + P +
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 94.8 bits (236), Expect = 2e-20
 Identities = 53/200 (26%), Positives = 82/200 (41%), Gaps = 10/200 (5%)

Query: 259 IPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLS 318
           IP  L    S   L+L+ N L         S   LQV++L   ++       +  L  LS
Sbjct: 22  IPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 319 TMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQL-SG 377
           T+ ++ N +        S L++L  L   + NL       I ++++L EL +  N + S 
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 378 TIPMMPPRLQ--IALNLSSNLFEGPIPTTFARLNGLEV----LDLSNNRFSGEIPQLLAQ 431
            +P     L     L+LSSN  +    T    L+ + +    LDLS N  +  I     +
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK 198

Query: 432 MPTLTQLLLTNNQLSGVVPK 451
              L +L L NN  S  V K
Sbjct: 199 EIRLHKLTLRNNFDSLNVMK 218

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  177 bits (452), Expect = 2e-48
 Identities = 104/458 (22%), Positives = 188/458 (41%), Gaps = 33/458 (7%)

Query: 10  LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGF 69
                  K  +    +      +  L      +     +++  L +L  +N S N+    
Sbjct: 26  KMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEY--LNNLTQINFSNNQLTDI 83

Query: 70  LPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLE 129
               L     L +++++ N      P  +A+  NLT + L  N ++   P  +  L+ L 
Sbjct: 84  --TPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLN 137

Query: 130 VLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIP 189
            L LS+N +     ++L+ +T+L +  +  N+ +   P      L  LD+S NK+  +  
Sbjct: 138 RLELSSNTISD--ISALSGLTSLQQL-SFGNQVTDLKPLANLTTLERLDISSNKVSDISV 194

Query: 190 IDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLE 249
           +  L   NL+++  + N +    P  +  NL  L L  N L  +I +    SL  LT L+
Sbjct: 195 LAKL--TNLESLIATNNQISDITPLGILTNLDELSLNGNQLK-DIGT--LASLTNLTDLD 249

Query: 250 LDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPS 309
           L NN  + + P  L     LT L L  N+++   P  L  L  L  + L  N+L    P 
Sbjct: 250 LANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP- 304

Query: 310 QFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQ 369
             S LK L+ + + +N++S   P  +S+LT L  L    N ++    +S+ N+ ++  L 
Sbjct: 305 -ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLS 359

Query: 370 LGGNQLSGTIPMMP-PRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQL 428
            G NQ+S   P+    R+   L L+   +        A ++    +           P  
Sbjct: 360 AGHNQISDLTPLANLTRITQ-LGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APAT 416

Query: 429 LAQMPTLTQLLLTNNQLSG---VVPKFSKWVSVDTTGN 463
           ++   + T+  +T N  S    V   FS+ V++     
Sbjct: 417 ISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTT 454

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  174 bits (444), Expect = 2e-47
 Identities = 109/450 (24%), Positives = 175/450 (38%), Gaps = 31/450 (6%)

Query: 3   SCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLS 62
           S   +D +  L   +  + S+        L  ++FS+N L     L    L  L  + ++
Sbjct: 41  SQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPL--KNLTKLVDILMN 98

Query: 63  KNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRI 122
            N+        L     L  L L  N      P  + +  NL  ++LS+N +S      +
Sbjct: 99  NNQIADI--TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISAL 152

Query: 123 GELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSG-SVPGGITRFLRNLDLSY 181
             L+ L+ L       D      LA++TTL R   + NK S  SV   +T  L +L  + 
Sbjct: 153 SGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSDISVLAKLTN-LESLIATN 208

Query: 182 NKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTS 241
           N++  + P+ +L   NL  + L+ N L+         NL  L L  N +    P    + 
Sbjct: 209 NQISDITPLGIL--TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSG 263

Query: 242 LEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLN 301
           L KLT L+L  N  + + P  L    +LT L L +N+L    PI   +L  L  + L  N
Sbjct: 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI--SNLKNLTYLTLYFN 319

Query: 302 KLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITN 361
            +S   P   S L  L  +    N +S    S L+NLTN+  L+   N ++   P  + N
Sbjct: 320 NISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LAN 373

Query: 362 MRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPI-PTTFARLNGLEVLDLSNNR 420
           +  + +L L     +         + I  N   N+    I P T +        D++ N 
Sbjct: 374 LTRITQLGLNDQAWTNAPVNYKANVSI-PNTVKNVTGALIAPATISDGGSYTEPDITWNL 432

Query: 421 FSGEIPQLLAQMPTLTQLLLTNNQLSGVVP 450
            S    ++         +       SG V 
Sbjct: 433 PS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  166 bits (422), Expect = 2e-44
 Identities = 108/444 (24%), Positives = 173/444 (38%), Gaps = 31/444 (6%)

Query: 32  LEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFH 91
           L     + +     I      L       L K        ++      +  L        
Sbjct: 3   LGSATITQDTPINQIF-TDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRL--G 57

Query: 92  GEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITT 151
            +   G+    NLT I+ S N L+   P  +  L+KL  ++++ N +     T LA++T 
Sbjct: 58  IKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTN 113

Query: 152 LSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGS 211
           L+      N+ +   P      L  L+LS N +  +  +  L   +LQ +    N +   
Sbjct: 114 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGL--TSLQQLSFG-NQVTDL 170

Query: 212 LPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTL 271
            P      L RL + +N  + +I       L  L  L   NN  + + P  LG   +L  
Sbjct: 171 KPLANLTTLERLDISSN-KVSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDE 225

Query: 272 LNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSI 331
           L+L  N+L       L SL  L  ++L  N++S   P   S L  L+ + +  N +S   
Sbjct: 226 LSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 281

Query: 332 PSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMP-PRLQIAL 390
           P  L+ LT L NL L +N L    P  I+N+++L  L L  N +S   P+    +LQ  L
Sbjct: 282 P--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQR-L 336

Query: 391 NLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVP 450
              +N          A L  +  L   +N+ S   P  LA +  +TQL L +   +    
Sbjct: 337 FFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPV 392

Query: 451 KFSKWVSVDTTGNLKLINVTAPDT 474
            +   VS+  T       + AP T
Sbjct: 393 NYKANVSIPNTVKNVTGALIAPAT 416

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  171 bits (436), Expect = 1e-47
 Identities = 80/278 (28%), Positives = 134/278 (48%), Gaps = 30/278 (10%)

Query: 568 FSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS 627
           F   YK  +  G    +K+L   ++  Q G   +F  E+E++    + N++    + +  
Sbjct: 43  FGKVYKGRLADGTLVAVKRL--KEERTQ-GGELQFQTEVEMISMAVHRNLLRLRGFCMTP 99

Query: 628 DSAYLFYEYAPKGTLFDVLHGCLEN--ALDWASRYSIAVGVAQGLAFLHGFTSNPILLLD 685
               L Y Y   G++   L    E+   LDW  R  IA+G A+GLA+LH      I+  D
Sbjct: 100 TERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRD 159

Query: 686 LSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST-VAGSVGYIPPEYAYTMRVTMAGN 744
           +   NI L    E  +GD  L K++D   +   ++T V G++G+I PEY  T + +   +
Sbjct: 160 VKAANILLDEEFEAVVGDFGLAKLMDYKDT--HVTTAVRGTIGHIAPEYLSTGKSSEKTD 217

Query: 745 VYSFGVILLELLTGKTAVN-------QGNELAKWVLRNSAQQDKLDHILD------FNVS 791
           V+ +GV+LLEL+TG+ A +           L  WV +   ++ KL+ ++D      +   
Sbjct: 218 VFGYGVMLLELITGQRAFDLARLANDDDVMLLDWV-KGLLKEKKLEALVDVDLQGNYK-- 274

Query: 792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
                   ++  +++VA+ C   SP  RPKM  V+RML
Sbjct: 275 ------DEEVEQLIQVALLCTQSSPMERPKMSEVVRML 306

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  172 bits (439), Expect = 4e-46
 Identities = 85/445 (19%), Positives = 164/445 (36%), Gaps = 20/445 (4%)

Query: 10  LKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNG-NINLQFDELVSLKSLNLS-KNK 65
           L+ L+ S N L SL    F   + L+ L+   N      +   F  L +L++L +     
Sbjct: 76  LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135

Query: 66  FNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGEL 125
           F+    I+     +L EL +   +      + +   R++  + L  +  +  +      L
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195

Query: 126 SKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLL 185
           S +  L L   NL  R   S   +  +S            +       L  L     +L 
Sbjct: 196 SSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254

Query: 186 GVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKL 245
             +  D  +   L   + S + +   L +  +  + RL +     +    S  ++ LEK+
Sbjct: 255 -EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI-PQFYLFYDLSTVYSLLEKV 312

Query: 246 TYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGI---LQVMNLQLNK 302
             + ++N+    +        +SL  L+L++N +           G    LQ + L  N 
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372

Query: 303 LS--GEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSIT 360
           L    +       LK L++++IS N+    +P        +  LNL    +   +   I 
Sbjct: 373 LRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI- 429

Query: 361 NMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNR 420
             ++L  L +  N L  +  +  PRLQ  L +S N  +     +      L V+ +S N+
Sbjct: 430 -PQTLEVLDVSNNNLD-SFSLFLPRLQE-LYISRNKLKTLPDASL--FPVLLVMKISRNQ 484

Query: 421 FSGEIPQLLAQMPTLTQLLLTNNQL 445
                  +  ++ +L ++ L  N  
Sbjct: 485 LKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  160 bits (407), Expect = 6e-42
 Identities = 74/455 (16%), Positives = 154/455 (33%), Gaps = 27/455 (5%)

Query: 8   DGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFN 67
           D   + +       S+P+    A ++ LD S N +    +       +L+ L L  ++ N
Sbjct: 5   DASGVCDGRSRSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

Query: 68  GFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSG-SVPDRIGELS 126
                      +LE L LS N              +L  ++L  N      V      L+
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123

Query: 127 KLEVLILSANNLDGRLP-TSLASITTLSRFAANQNKFSGSVPGGITRF--LRNLDLSYNK 183
            L+ L +        +     A +T+L+                +     + +L L  ++
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 184 LLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRL-GTNLLIGEIPSATFTSL 242
              ++ I      +++ ++L    L       +  + V   +         +   +F  L
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

Query: 243 EKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNK 302
            KL    L+ +        +   C    L +   +E +    +       ++ +++    
Sbjct: 244 LKLLRYILELSEV------EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297

Query: 303 LSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSI---PNSI 359
           L  ++ + +S L+ +  + +  + +     SF  +L +L  L+L +N +           
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357

Query: 360 TNMRSLIELQLGGNQLSGTIPMMP------PRLQIALNLSSNLFEGPIPTTFARLNGLEV 413
               SL  L L  N L  ++            L   L++S N F  P+P +      +  
Sbjct: 358 GAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTS-LDISRNTFH-PMPDSCQWPEKMRF 414

Query: 414 LDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGV 448
           L+LS+      +   +    TL  L ++NN L   
Sbjct: 415 LNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSF 446

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  136 bits (345), Expect = 6e-34
 Identities = 74/395 (18%), Positives = 137/395 (34%), Gaps = 44/395 (11%)

Query: 6   GIDGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSK 63
           G+  L  L      L +    +      +  L    +     + +  D L S++ L L  
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 64  NKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIG 123
                F    L   +    +                  R   L D S N L   +   I 
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAF-------------RGSVLTDESFNELL-KLLRYIL 251

Query: 124 ELSKLEVLILSANNLDGRLPTSLASI--------TTLSRFAANQNKFSGSVPGGITRF-- 173
           ELS++E    + N L    P+    +         T+ R    Q      +    +    
Sbjct: 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311

Query: 174 LRNLDLSYNKLLGVIPIDLLSH-PNLQTIDLSVNMLEGSLPQNMS-----PNLVRLRLGT 227
           ++ + +  +K+  ++P     H  +L+ +DLS N++     +N +     P+L  L L  
Sbjct: 312 VKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 228 NLLIG-EIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQ 286
           N L   +       +L+ LT L++  N+F   +P        +  LNL+   +   +   
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVK-- 426

Query: 287 LGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNL 346
                 L+V+++  N L         +L+ L    IS N L  ++P   S    L+ + +
Sbjct: 427 TCIPQTLEVLDVSNNNLD-SFSLFLPRLQEL---YISRNKLK-TLPDA-SLFPVLLVMKI 480

Query: 347 RQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPM 381
            +N L          + SL ++ L  N    + P 
Sbjct: 481 SRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 96.7 bits (241), Expect = 6e-21
 Identities = 50/282 (17%), Positives = 84/282 (29%), Gaps = 30/282 (10%)

Query: 196 PNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSF 255
                 D        S+P  ++  +  L L  N  I  I      +   L  L L ++  
Sbjct: 5   DASGVCDGRSRSFT-SIPSGLTAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRI 62

Query: 256 TGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLK 315
             +      S  SL  L+L+ N L+ SL                         S F  L 
Sbjct: 63  NTIEGDAFYSLGSLEHLDLSDNHLS-SLS-----------------------SSWFGPLS 98

Query: 316 LLSTMNISWNSLSG-SIPSFLSNLTNLVNLNLRQNNLNGSIP-NSITNMRSLIELQLGGN 373
            L  +N+  N      + S   NLTNL  L +        I       + SL EL++   
Sbjct: 99  SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 374 QLSGTIPMMPPRLQI--ALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQ 431
            L          ++    L L  +     +      L+ +  L+L +   +      L  
Sbjct: 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218

Query: 432 MPTLTQLLLTNNQLSGVVPKFSKWVSVDTTGNLKLINVTAPD 473
               + +     + S +  +    +       L+L  V   D
Sbjct: 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 83.6 bits (207), Expect = 9e-17
 Identities = 41/218 (18%), Positives = 81/218 (37%), Gaps = 11/218 (5%)

Query: 265 SCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISW 324
           SC +  + +        S+P  L     ++ ++L  NK++            L  + +  
Sbjct: 3   SCDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 325 NSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMP- 383
           + ++        +L +L +L+L  N+L+    +    + SL  L L GN    T+ +   
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSL 118

Query: 384 ----PRLQIALNLSS-NLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQL 438
                 LQ  L + +   F       FA L  L  L++          Q L  +  +  L
Sbjct: 119 FPNLTNLQT-LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177

Query: 439 LLTNNQLSGVVPKFSKWVSVDTTGNLKLINVTAPDTSP 476
            L  ++ + ++  F+  +S      L+  N+     SP
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSP 215

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 9/113 (7%)

Query: 3   SCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLS 62
           SC   + ++ LN S   +  + T      LEVLD S+NNL+         L  L+ L +S
Sbjct: 405 SCQWPEKMRFLNLSSTGIRVVKT-CIPQTLEVLDVSNNNLDSF----SLFLPRLQELYIS 459

Query: 63  KNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGI-ADYRNLTLIDLSANNL 114
           +NK    LP        L  + +S N     +P GI     +L  I L  N  
Sbjct: 460 RNKLK-TLPDASLFPV-LLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 509

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  172 bits (437), Expect = 1e-44
 Identities = 95/493 (19%), Positives = 175/493 (35%), Gaps = 66/493 (13%)

Query: 10  LKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQ-FDELVSLKSLNLSKNKF 66
            + L  S N + ++   +F     L++L+  S      I+ + F  L +L+ L+L  +K 
Sbjct: 26  TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85

Query: 67  NGFLPINLGKTKALEELVLSGNAFHGEI--PKGIADYRNLTLIDLSANNLSG-SVPDRIG 123
               P        L EL L        +       + + LT +DLS N +    +    G
Sbjct: 86  YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145

Query: 124 ELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNK 183
           +L+ L+ +  S+N +       L  +   +                    L    L+ N 
Sbjct: 146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKT--------------------LSFFSLAANS 185

Query: 184 LLGVIPIDLLSHPN------LQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSA 237
           L   + +D     N      L+ +D+S N     +  N S             I +  + 
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS-----------NAISKSQAF 234

Query: 238 TFTSLEKLTYLELDNNSFTGMIPQQLGS--CRSLTLLNLAQNELNGSLPIQLGSLGILQV 295
           +      +       ++               S+  L+L+   +         +L  L+V
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294

Query: 296 MNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSI 355
           +NL  NK++      F  L  L  +N+S+N L     S    L  +  ++L++N++    
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 356 PNSITNMRSLIELQLGGNQLS------------------GTIPMMPPRLQIALNLSSNLF 397
             +   +  L  L L  N L+                   T+P +     + ++LS N  
Sbjct: 355 DQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANL-IHLSENRL 413

Query: 398 EG-PIPTTFARLNGLEVLDLSNNRFSG-EIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKW 455
           E   I     R+  L++L L+ NRFS     Q  ++ P+L QL L  N L         W
Sbjct: 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473

Query: 456 VSVDTTGNLKLIN 468
              +   +L+++ 
Sbjct: 474 DVFEGLSHLQVLY 486

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  151 bits (382), Expect = 8e-38
 Identities = 79/426 (18%), Positives = 141/426 (33%), Gaps = 50/426 (11%)

Query: 33  EVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHG 92
            +  +   NL   +      L + + L LS N        +    + L+ L L       
Sbjct: 7   RIAFYRFCNLT-QV---PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62

Query: 93  EIPKGI-ADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITT 151
            I K    +  NL ++DL ++ +    PD    L  L  L L                  
Sbjct: 63  TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG-------------- 108

Query: 152 LSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSH-PNLQTIDLSVNML-- 208
           LS        F         + L  LDLS N++  +          +L++ID S N +  
Sbjct: 109 LSDAVLKDGYFRN------LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162

Query: 209 --EGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSC 266
             E  L       L    L  N L   +       +     + L+    +       G+ 
Sbjct: 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS-------GNG 215

Query: 267 RSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLS--TMNISW 324
            ++ +     N ++ S    L     +       + +     + F+ L   S   +++S 
Sbjct: 216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH 275

Query: 325 NSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQL----SGTIP 380
             +          L +L  LNL  N +N     +   + +L  L L  N L    S    
Sbjct: 276 GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335

Query: 381 MMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLL 440
            + P++   ++L  N        TF  L  L+ LDL +N  +      +  +P++  + L
Sbjct: 336 GL-PKVAY-IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFL 388

Query: 441 TNNQLS 446
           + N+L 
Sbjct: 389 SGNKLV 394

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  146 bits (371), Expect = 2e-36
 Identities = 110/544 (20%), Positives = 202/544 (37%), Gaps = 62/544 (11%)

Query: 10  LKLLNFSKNELVSLP---TFNGFAGLEVLDFSSNNLNGNINLQFDEL--VSLKSLNLSKN 64
           L  L+ SKN++ SL    +F     L+ +DFSSN +      + + L   +L   +L+ N
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184

Query: 65  KFNGFLP------INLGKTKALEELVLSGNAFHGEIPK------------GIADYRNLTL 106
                +       +N  +   LE L +SGN +  +I               +    ++  
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244

Query: 107 IDLSANNLSGSVPDRIGELSK--LEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSG 164
                +N+     +    L++  +  L LS   +         ++  L       NK + 
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN- 303

Query: 165 SVPGGI---TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVN---MLEGSLPQNMSP 218
            +          L+ L+LSYN L  +   +    P +  IDL  N   +++    + +  
Sbjct: 304 KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL-E 362

Query: 219 NLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNE 278
            L  L L  N L       T   +  +  + L  N    +    L    +  L++L++N 
Sbjct: 363 KLQTLDLRDNALT------TIHFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENR 412

Query: 279 LNG-SLPIQLGSLGILQVMNLQLNKLSG-EIPSQFSQLKLLSTMNISWNSLSGSI----- 331
           L    +   L  +  LQ++ L  N+ S        S+   L  + +  N L  +      
Sbjct: 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472

Query: 332 PSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIP--MMPPRLQIA 389
                 L++L  L L  N LN   P   +++ +L  L L  N+L+  +    +P  L+I 
Sbjct: 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEI- 530

Query: 390 LNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVV 449
           L++S N    P P  F  L+   VLD+++N+F  E      ++ T    L   N      
Sbjct: 531 LDISRNQLLAPNPDVFVSLS---VLDITHNKFICEC-----ELSTFINWLNHTNVTIAGP 582

Query: 450 PKFSKWVSVDTTGNLKLINVTAPDTSPEKRRKSVVVPIVIALAAAILAVGVVSIFVLSIS 509
           P     V  D+   + L +++      E+  KS+   + I     +    +  + V    
Sbjct: 583 PADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFR 642

Query: 510 RRFY 513
              +
Sbjct: 643 GFCF 646

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  138 bits (350), Expect = 7e-34
 Identities = 69/369 (18%), Positives = 133/369 (36%), Gaps = 31/369 (8%)

Query: 106 LIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGS 165
           +      NL+  VP     L+  E L+LS N +     +S   +  L            +
Sbjct: 8   IAFYRFCNLT-QVPQV---LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 166 VPGGITRFLRNL---DLSYNKLLGVIPIDLLSH-PNLQTIDLSVNMLEGSLPQNMS---- 217
           +     R L NL   DL  +K+   +  D      +L  + L    L  ++ ++      
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122

Query: 218 PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTL--LNLA 275
             L RL L  N +       +F  L  L  ++  +N    +   +L   +  TL   +LA
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182

Query: 276 QNELNGSLPIQ-LGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSF 334
            N L   + +     +   + M L++  +SG      +   +        N++S S    
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSG------NGWTVDI-TGNFSNAISKSQAFS 235

Query: 335 LSNLTNLVNLNLRQNNLNGSIPNSITNMR--SLIELQLGGNQLSGTIPMMP----PRLQI 388
           L    +++      +N+     N+   +   S+  L L    +  ++          L++
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKV 294

Query: 389 ALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGV 448
            LNL+ N         F  L+ L+VL+LS N            +P +  + L  N ++ +
Sbjct: 295 -LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353

Query: 449 VPKFSKWVS 457
             +  K++ 
Sbjct: 354 QDQTFKFLE 362

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 74.8 bits (184), Expect = 7e-14
 Identities = 59/297 (19%), Positives = 107/297 (36%), Gaps = 49/297 (16%)

Query: 1   MQSCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNG-NINLQFDELVSLKSL 59
           + +   I  +  +  S N+LV+LP  N      ++  S N L   +I      +  L+ L
Sbjct: 374 LTTIHFIPSIPDIFLSGNKLVTLPKINLT--ANLIHLSENRLENLDILYFLLRVPHLQIL 431

Query: 60  NLSKNKFNGFLPINL-GKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSV 118
            L++N+F+         +  +LE+L L  N         +                    
Sbjct: 432 ILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC------------------- 472

Query: 119 PDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLD 178
            D    LS L+VL L+ N            + +L         FS          LR L 
Sbjct: 473 WDVFEGLSHLQVLYLNHNY-----------LNSLPPGV-----FSH------LTALRGLS 510

Query: 179 LSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSAT 238
           L+ N+L  V+  + L   NL+ +D+S N L  +   ++  +L  L +  N  I E   +T
Sbjct: 511 LNSNRLT-VLSHNDLP-ANLEILDISRNQLL-APNPDVFVSLSVLDITHNKFICECELST 567

Query: 239 FTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQV 295
           F +    T + +       +      S   ++L +L+    +    ++     +  V
Sbjct: 568 FINWLNHTNVTIAGP-PADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIV 623

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  161 bits (411), Expect = 2e-44
 Identities = 79/266 (29%), Positives = 124/266 (46%), Gaps = 19/266 (7%)

Query: 572 YKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY 631
           YK V+  G    +K+        Q     +F+ E+E L    + ++++ + +    +   
Sbjct: 56  YKGVLRDGAKVALKRRTPESS--Q--GIEEFETEIETLSFCRHPHLVSLIGFCDERNEMI 111

Query: 632 LFYEYAPKGTLFDVLHGCLENA--LDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTR 689
           L Y+Y   G L   L+G       + W  R  I +G A+GL +LH   +  I+  D+ + 
Sbjct: 112 LIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLH---TRAIIHRDVKSI 168

Query: 690 NIFLKSLKEPQIGDIELCKVIDPSKSTGSLST-VAGSVGYIPPEYAYTMRVTMAGNVYSF 748
           NI L     P+I D  + K          LST V G++GYI PEY    R+T   +VYSF
Sbjct: 169 NILLDENFVPKITDFGISKKG-TELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSF 227

Query: 749 GVILLELLTGKTAVNQGNE-----LAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLT 803
           GV+L E+L  ++A+ Q        LA+W    S    +L+ I+D N+    +   S +  
Sbjct: 228 GVVLFEVLCARSAIVQSLPREMVNLAEWA-VESHNNGQLEQIVDPNL-ADKIRPES-LRK 284

Query: 804 VLKVAVACVSVSPEARPKMKSVLRML 829
               AV C+++S E RP M  VL  L
Sbjct: 285 FGDTAVKCLALSSEDRPSMGDVLWKL 310

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  161 bits (411), Expect = 4e-44
 Identities = 76/392 (19%), Positives = 150/392 (38%), Gaps = 48/392 (12%)

Query: 56  LKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLS 115
             +L       N   P            VL   +    +     +  ++T + ++   ++
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 116 GSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLR 175
            S+   I  L+ LE L L+ N +     T ++ ++ L +                   L 
Sbjct: 58  -SIQG-IEYLTNLEYLNLNGNQI-----TDISPLSNLVK-------------------LT 91

Query: 176 NLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIP 235
           NL +  NK+  +  +  L   NL+ + L+ + +    P      +  L LG N  + ++ 
Sbjct: 92  NLYIGTNKITDISALQNL--TNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLS 149

Query: 236 SATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQV 295
               +++  L YL +  +    + P  + +   L  L+L  N++    P  L SL  L  
Sbjct: 150 P--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHY 203

Query: 296 MNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSI 355
               +N+++   P   + +  L+++ I  N ++   P  L+NL+ L  L +  N ++   
Sbjct: 204 FTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-- 257

Query: 356 PNSITNMRSLIELQLGGNQLSGTIPMMP-PRLQIALNLSSNLFEGPIPTTFARLNGLEVL 414
            N++ ++  L  L +G NQ+S    +    +L   L L++N            L  L  L
Sbjct: 258 INAVKDLTKLKMLNVGSNQISDISVLNNLSQLNS-LFLNNNQLGNEDMEVIGGLTNLTTL 316

Query: 415 DLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLS 446
            LS N  +   P  LA +  +      N  + 
Sbjct: 317 FLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  158 bits (402), Expect = 6e-43
 Identities = 79/392 (20%), Positives = 143/392 (36%), Gaps = 46/392 (11%)

Query: 31  GLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAF 90
           G   L      +N        +L       L K        +   + +++ +LV++G   
Sbjct: 1   GAATLATLPAPINQIFPD--ADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKV 56

Query: 91  HGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASIT 150
                +GI    NL  ++L+ N ++   P  +  L KL  L +  N +     ++L ++T
Sbjct: 57  AS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLT 110

Query: 151 TLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEG 210
            L     N++  S   P      + +L+L  N  L  +   L +   L  + ++ + ++ 
Sbjct: 111 NLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD 169

Query: 211 SLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLT 270
             P     +L  L L  N +    P     SL  L Y     N  T + P  + +   L 
Sbjct: 170 VTPIANLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITDITP--VANMTRLN 224

Query: 271 LLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGS 330
            L +  N++    P  L +L  L  + +  N++S    +    L  L  +N+  N +S  
Sbjct: 225 SLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD- 279

Query: 331 IPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIAL 390
             S L+NL+ L +L L  N L       I  + +L  L L  N ++   P          
Sbjct: 280 -ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---------- 328

Query: 391 NLSSNLFEGPIPTTFARLNGLEVLDLSNNRFS 422
                          A L+ ++  D +N    
Sbjct: 329 --------------LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  131 bits (331), Expect = 2e-33
 Identities = 70/372 (18%), Positives = 128/372 (34%), Gaps = 68/372 (18%)

Query: 80  LEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLD 139
              L       +   P   AD        L   +++  V     EL  +  L+++   + 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV- 56

Query: 140 GRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQ 199
                S+  I  L+                    L  L+L+ N++  + P+  L    L 
Sbjct: 57  ----ASIQGIEYLTN-------------------LEYLNLNGNQITDISPLSNL--VKLT 91

Query: 200 TIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMI 259
            + +  N +          NL  L L  + +    P     +L K+  L L  N      
Sbjct: 92  NLYIGTNKITDISALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLS-D 147

Query: 260 PQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLST 319
              L +   L  L + ++++    PI   +L  L  ++L  N++    P   + L  L  
Sbjct: 148 LSPLSNMTGLNYLTVTESKVKDVTPI--ANLTDLYSLSLNYNQIEDISP--LASLTSLHY 203

Query: 320 MNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTI 379
                N ++   P  ++N+T L +L +  N +    P  + N+  L  L++G NQ+S   
Sbjct: 204 FTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-- 257

Query: 380 PMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLL 439
                                       L  L++L++ +N+ S     +L  +  L  L 
Sbjct: 258 ----------------------INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLF 293

Query: 440 LTNNQLSGVVPK 451
           L NNQL     +
Sbjct: 294 LNNNQLGNEDME 305

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.0 bits (123), Expect = 8e-07
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 2/79 (2%)

Query: 10  LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGF 69
           LK+LN   N++  +   N  + L  L  ++N L          L +L +L LS+N     
Sbjct: 267 LKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326

Query: 70  LPINLGKTKALEELVLSGN 88
            P  L     ++    +  
Sbjct: 327 RP--LASLSKMDSADFANQ 343

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  156 bits (398), Expect = 9e-43
 Identities = 68/251 (27%), Positives = 114/251 (45%), Gaps = 13/251 (5%)

Query: 584 IKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLF 643
           +KKL     I       +FD+E++V+ K  + N++  L +    D   L Y Y P G+L 
Sbjct: 59  VKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLL 118

Query: 644 DVLHGCLENA-LDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIG 702
           D L        L W  R  IA G A G+ FLH    N  +  D+ + NI L      +I 
Sbjct: 119 DRLSCLDGTPPLSWHMRCKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAFTAKIS 175

Query: 703 DIELCKVIDPSKSTGSLST-VAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTA 761
           D  L +  +    T  +++ + G+  Y+ PE      +T   ++YSFGV+LLE++TG  A
Sbjct: 176 DFGLARASEKFAQTV-MTSRIVGTTAYMAPEA-LRGEITPKSDIYSFGVVLLEIITGLPA 233

Query: 762 VNQGNE---LAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEA 818
           V++  E   L         ++  ++  +D  ++       + +  +  VA  C+      
Sbjct: 234 VDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDAD---STSVEAMYSVASQCLHEKKNK 290

Query: 819 RPKMKSVLRML 829
           RP +K V ++L
Sbjct: 291 RPDIKKVQQLL 301

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  150 bits (382), Expect = 3e-39
 Identities = 89/474 (18%), Positives = 146/474 (30%), Gaps = 86/474 (18%)

Query: 10  LKLLNFSKNELVSLPT-FNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNG 68
           L+      + L  +P              + +    N      E   +    L       
Sbjct: 13  LQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQ 72

Query: 69  FLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKL 128
                        EL L+       +P+      +L  +  S N+L+  +P+    L  L
Sbjct: 73  -----------AHELELNNLGLS-SLPELP---PHLESLVASCNSLT-ELPELPQSLKSL 116

Query: 129 EVLILSANNLDGRLPTSLAS-------ITTLSRFA---------ANQNKFSGSVPGGITR 172
            V   +   L   LP  L         +  L              + N     +P     
Sbjct: 117 LVDNNNLKALSD-LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPS 174

Query: 173 FLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIG 232
            L  +    N+L  +  +  L  P L  I    N L+  LP     +L  +  G N+L  
Sbjct: 175 -LEFIAAGNNQLEELPELQNL--PFLTAIYADNNSLK-KLPDLPL-SLESIVAGNNIL-E 228

Query: 233 EIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGI 292
           E+P     +L  LT +  DNN     +P    S  +L + +   N L   LP    SL  
Sbjct: 229 ELPE--LQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRD---NYLT-DLPELPQSLTF 281

Query: 293 LQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLN 352
           L V     + LS   P+       L  +N S N +  S+     +L     LN+  N L 
Sbjct: 282 LDVSENIFSGLSELPPN-------LYYLNASSNEIR-SLCDLPPSLE---ELNVSNNKLI 330

Query: 353 GSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARL---- 408
             +P        L  L    N L+  +P +P  L+  L++  N      P     +    
Sbjct: 331 -ELPALPPR---LERLIASFNHLA-EVPELPQNLKQ-LHVEYNPLRE-FPDIPESVEDLR 383

Query: 409 ------------NGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVP 450
                         L+ L +  N    E P +      +  L + + ++     
Sbjct: 384 MNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPES---VEDLRMNSERVVDPYE 433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  147 bits (373), Expect = 4e-38
 Identities = 102/436 (23%), Positives = 166/436 (38%), Gaps = 57/436 (13%)

Query: 32  LEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFH 91
           L+     S+NL   + ++ + + S      + +++    P   G+ + +    L      
Sbjct: 13  LQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD- 70

Query: 92  GEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITT 151
                     R    ++L+   LS S+P+       LE L+ S N+L   LP    S+ +
Sbjct: 71  ----------RQAHELELNNLGLS-SLPE---LPPHLESLVASCNSLT-ELPELPQSLKS 115

Query: 152 LSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGS 211
           L     N    S   P      L  L +S N+L  +  +   S   L+ ID+  N L+  
Sbjct: 116 LLVDNNNLKALSDLPPL-----LEYLGVSNNQLEKLPELQNSS--FLKIIDVDNNSLK-K 167

Query: 212 LPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTL 271
           LP    P+L  +  G N L  E+P     +L  LT +  DNNS    +P    S   L  
Sbjct: 168 LPDLP-PSLEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSLKK-LPDLPLS---LES 219

Query: 272 LNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSI 331
           +    N L      +L +L  L  +    N L   +P     L+ L   N+  N L+  +
Sbjct: 220 IVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEAL---NVRDNYLT-DL 272

Query: 332 PSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALN 391
           P    +LT L       + L+   PN       L  L    N++  ++  +PP L+  LN
Sbjct: 273 PELPQSLTFLDVSENIFSGLSELPPN-------LYYLNASSNEIR-SLCDLPPSLEE-LN 323

Query: 392 LSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPK 451
           +S+N     +P        LE L  S N  + E+P+L      L QL +  N L      
Sbjct: 324 VSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPELP---QNLKQLHVEYNPLREFPDI 375

Query: 452 FSKWVSVDTTGNLKLI 467
                 +    +L  +
Sbjct: 376 PESVEDLRMNSHLAEV 391

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  132 bits (334), Expect = 5e-33
 Identities = 80/370 (21%), Positives = 134/370 (36%), Gaps = 46/370 (12%)

Query: 7   IDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKF 66
              L+ L  S N+L  LP     + L+++D  +N+L     L  D   SL+ +    N+ 
Sbjct: 130 PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK---KL-PDLPPSLEFIAAGNNQL 185

Query: 67  NGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELS 126
              LP  L     L  +    N+   ++P       +L  I    N L   +P+ +  L 
Sbjct: 186 E-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPL---SLESIVAGNNILE-ELPE-LQNLP 237

Query: 127 KLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLG 186
            L  +    N L   LP    S+  L+      N  +  +P      L  LD+S N   G
Sbjct: 238 FLTTIYADNNLL-KTLPDLPPSLEALN---VRDNYLT-DLPELPQS-LTFLDVSENIFSG 291

Query: 187 VIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLT 246
            +       PNL  ++ S N +  SL     P+L  L +  N LI E+P+       +L 
Sbjct: 292 -LSELP---PNLYYLNASSNEIR-SLCDLP-PSLEELNVSNNKLI-ELPA----LPPRLE 340

Query: 247 YLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGE 306
            L    N     +P+      +L  L++  N L    P    S+      +L++N    E
Sbjct: 341 RLIASFNHLA-EVPELPQ---NLKQLHVEYNPLR-EFPDIPESVE-----DLRMNSHLAE 390

Query: 307 IPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLI 366
           +P     LK L   ++  N L    P    ++    +L +    +      +      L 
Sbjct: 391 VPELPQNLKQL---HVETNPLR-EFPDIPESVE---DLRMNSERVVDPYEFAHETTDKLE 443

Query: 367 ELQLGGNQLS 376
           +     +   
Sbjct: 444 DDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  107 bits (269), Expect = 9e-25
 Identities = 59/294 (20%), Positives = 103/294 (35%), Gaps = 39/294 (13%)

Query: 172 RFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLI 231
            FL+      + L   +P++  +  +      + +  E + P               + +
Sbjct: 11  TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQR-------EMAV 62

Query: 232 GEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLG 291
             +             LEL+N   +  +P+       L  L  + N L   LP    SL 
Sbjct: 63  SRLRDCLDRQA---HELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLK 114

Query: 292 ILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNL 351
            L V N  L  LS   P        L  + +S N L   +P    N + L  +++  N+L
Sbjct: 115 SLLVDNNNLKALSDLPPL-------LEYLGVSNNQLE-KLPEL-QNSSFLKIIDVDNNSL 165

Query: 352 NGSIPNSITNMRSLIELQLGGNQLSGTIPMMP--PRLQIALNLSSNLFEGPIPTTFARLN 409
              +P+   +   L  +  G NQL   +P +   P L   +   +N     +        
Sbjct: 166 K-KLPDLPPS---LEFIAAGNNQLE-ELPELQNLPFLTA-IYADNNS----LKKLPDLPL 215

Query: 410 GLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVSVDTTGN 463
            LE +   NN    E+P+L   +P LT +   NN L  +        +++   N
Sbjct: 216 SLESIVAGNNILE-ELPEL-QNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN 267

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  105 bits (265), Expect = 3e-24
 Identities = 59/313 (18%), Positives = 115/313 (36%), Gaps = 37/313 (11%)

Query: 5   GGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKN 64
                L+ +    N+L  LP       L  +   +N+L        D  +SL+S+    N
Sbjct: 170 DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL----PDLPLSLESIVAGNN 225

Query: 65  KFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGE 124
                    L     L  +    N     +P       +L  +++  N L+  +P+    
Sbjct: 226 ILE--ELPELQNLPFLTTIYADNNLLK-TLPDLP---PSLEALNVRDNYLT-DLPELPQS 278

Query: 125 LSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKL 184
           L+ L+V     +     L     ++  L+   A+ N+   S+       L  L++S NKL
Sbjct: 279 LTFLDVSENIFSG----LSELPPNLYYLN---ASSNEIR-SLCDLPPS-LEELNVSNNKL 329

Query: 185 LGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEK 244
           +  +P      P L+ +  S N L   +P+    NL +L +  N L  E P       E 
Sbjct: 330 I-ELPALP---PRLERLIASFNHLA-EVPELPQ-NLKQLHVEYNPLR-EFPD----IPES 378

Query: 245 LTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLS 304
           +  L ++++     + +     ++L  L++  N L    P    S+  L++ + ++    
Sbjct: 379 VEDLRMNSH-----LAEVPELPQNLKQLHVETNPLR-EFPDIPESVEDLRMNSERVVDPY 432

Query: 305 GEIPSQFSQLKLL 317
                   +L+  
Sbjct: 433 EFAHETTDKLEDD 445

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 88.5 bits (220), Expect = 1e-18
 Identities = 58/276 (21%), Positives = 93/276 (33%), Gaps = 34/276 (12%)

Query: 5   GGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKN 64
                L+ +    N L  LP       L  +   +N L        D   SL++LN+  N
Sbjct: 212 DLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT----LPDLPPSLEALNVRDN 267

Query: 65  KFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGE 124
                LP        L+      +      P       NL  ++ S+N +  S+ D    
Sbjct: 268 YLTD-LPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIR-SLCD---L 315

Query: 125 LSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKL 184
              LE L +S N L   LP     +  L    A+ N  +  VP      L+ L + YN L
Sbjct: 316 PPSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHLA-EVPELPQN-LKQLHVEYNPL 369

Query: 185 LGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEK 244
               P       +++  DL +N     +P+    NL +L + TN L  E P       E 
Sbjct: 370 R-EFPDIP---ESVE--DLRMNSHLAEVPELPQ-NLKQLHVETNPLR-EFPD----IPES 417

Query: 245 LTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELN 280
           +  L +++            +   L       +  +
Sbjct: 418 VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 68.5 bits (168), Expect = 4e-12
 Identities = 35/188 (18%), Positives = 62/188 (32%), Gaps = 40/188 (21%)

Query: 289 SLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNL---------- 338
           S   LQ      + L+ E+P +   +K  +    +W+    + P                
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 339 ---TNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQ--IALNLS 393
                   L L    L+ S+P    +   L  L    N L+  +P +P  L+  +  N +
Sbjct: 68  CLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNN 122

Query: 394 SNLFEGPIPT---------------TFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQL 438
                   P                     + L+++D+ NN    ++P L    P+L  +
Sbjct: 123 LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFI 178

Query: 439 LLTNNQLS 446
              NNQL 
Sbjct: 179 AAGNNQLE 186

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 19/160 (11%)

Query: 4   CGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSK 63
           C     L+ LN S N+L+ LP       LE L  S N+L        +   +LK L++  
Sbjct: 313 CDLPPSLEELNVSNNKLIELPALPP--RLERLIASFNHLAEVP----ELPQNLKQLHVEY 366

Query: 64  NKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIG 123
           N      P        +E+L ++ +    E+P+     +NL  + +  N L    PD   
Sbjct: 367 NPLR-EFPDIPES---VEDLRMNSH--LAEVPELP---QNLKQLHVETNPLR-EFPD--- 413

Query: 124 ELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFS 163
               +E L +++  +      +  +   L       +   
Sbjct: 414 IPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  144 bits (364), Expect = 5e-38
 Identities = 54/264 (20%), Positives = 99/264 (37%), Gaps = 29/264 (10%)

Query: 592 KIFQLGSHHKFDKELEV--LGKLSNSNVMTPLAYVLASDSA----YLFYEYAPKGTLFDV 645
           KIF +     +  E EV  L  + + N++  +       S     +L   +  KG+L D 
Sbjct: 53  KIFPIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDF 112

Query: 646 LHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLL-------DLSTRNIFLKSLKE 698
           L     N + W     IA  +A+GLA+LH                 D+ ++N+ LK+   
Sbjct: 113 LKA---NVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLT 169

Query: 699 PQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYA-----YTMRVTMAGNVYSFGVILL 753
             I D  L    +  KS G      G+  Y+ PE       +     +  ++Y+ G++L 
Sbjct: 170 ACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLW 229

Query: 754 ELLTGKTAVNQGNE-----LAKWVLRNSAQQDKLDHILDFNV---SRTSLAVRSQMLTVL 805
           EL +  TA +   +       + + ++ + +D  + ++        R      + M  + 
Sbjct: 230 ELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLC 289

Query: 806 KVAVACVSVSPEARPKMKSVLRML 829
           +    C     EAR     V   +
Sbjct: 290 ETIEECWDHDAEARLSAGCVGERI 313

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  147 bits (372), Expect = 8e-38
 Identities = 68/404 (16%), Positives = 126/404 (31%), Gaps = 43/404 (10%)

Query: 50  FDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDL 109
                  K   ++ +     L         ++EL LSGN         +A +  L L++L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 110 SANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGG 169
           S+N L     D +  LS L  L L+ N +       L    ++    A  N  S  V   
Sbjct: 66  SSNVLY-ETLD-LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCS 117

Query: 170 ITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNL 229
             +  +N+ L+ NK+  +  +D      +Q +DL +N ++ ++                 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVN---------------- 160

Query: 230 LIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGS 289
                 +    S + L +L L  N     +  Q+     L  L+L+ N+L   +  +  S
Sbjct: 161 -----FAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQS 212

Query: 290 LGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLS-GSIPSFLSNLTNLVNLNLRQ 348
              +  ++L+ NKL   I       + L   ++  N    G++  F S    +  +    
Sbjct: 213 AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK-- 269

Query: 349 NNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGP------IP 402
             +      +            G             RL         L  G       + 
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLE 329

Query: 403 TTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLS 446
                      +D    ++   I Q+  +      L      L 
Sbjct: 330 CERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  142 bits (360), Expect = 3e-36
 Identities = 63/444 (14%), Positives = 123/444 (27%), Gaps = 67/444 (15%)

Query: 10  LKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFN 67
            K+   + + L             ++ LD S N L+            L+ LNLS N   
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 68  GFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSK 127
             L +       L  L L+ N    E+  G     ++  +  + NN+S  V         
Sbjct: 72  ETLDL--ESLSTLRTLDLNNNYVQ-ELLVGP----SIETLHAANNNIS-RVSCSR--GQG 121

Query: 128 LEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGV 187
            + + L+ N +           +                       ++ LDL  N++  V
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSR----------------------VQYLDLKLNEIDTV 159

Query: 188 IPIDLLSH-PNLQTIDLSVNMLEGSLPQNMS-PNLVRLRLGTNLLIGEIPSATFTSLEKL 245
              +L +    L+ ++L  N +   +   +    L  L L +N  +  +    F S   +
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSN-KLAFMGPE-FQSAAGV 216

Query: 246 TYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSG 305
           T++ L NN    +I + L   ++L   +L  N  +    ++       +V  +    +  
Sbjct: 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKK 274

Query: 306 EIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLR----QNNLNGSIPNSITN 361
                  +  + +  +            F   L  L          Q +    +     N
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECEREN 334

Query: 362 MRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRF 421
                E+     Q   T+                           R      L+      
Sbjct: 335 QARQREIDALKEQYR-TVI---------------------DQVTLRKQAKITLEQKKKAL 372

Query: 422 SGEIPQLLAQMPTLTQLLLTNNQL 445
             ++         L   L      
Sbjct: 373 DEQVSNGRRAHAELDGTLQQAVGQ 396

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  134 bits (340), Expect = 1e-33
 Identities = 60/425 (14%), Positives = 121/425 (28%), Gaps = 45/425 (10%)

Query: 5   GGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKN 64
                L+LLN S N L         + L  LD ++N +      +     S+++L+ + N
Sbjct: 55  APFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANN 109

Query: 65  KFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSG-SVPDRIG 123
             +    ++  + +  + + L+ N               +  +DL  N +   +  +   
Sbjct: 110 NISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166

Query: 124 ELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNK 183
               LE L L  N +       +      ++                   L+ LDLS NK
Sbjct: 167 SSDTLEHLNLQYNFI-----YDVKGQVVFAK-------------------LKTLDLSSNK 202

Query: 184 LLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEIPSATFTS 241
           L   +  +  S   +  I L  N L   + + +    NL    L  N          F+ 
Sbjct: 203 LA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 242 LEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLN 301
            +++    +   +   +  Q    C   TL +                L  L+     L 
Sbjct: 261 NQRVQT--VAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALL 318

Query: 302 KLSG----EIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPN 357
              G     +  +         ++         I          + L  ++  L+  + N
Sbjct: 319 SGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSN 378

Query: 358 SITNMRSLIELQLGGNQLSG--TIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLD 415
                  L                      LQ+   +     E  +     + N +   D
Sbjct: 379 GRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWD 438

Query: 416 LSNNR 420
           +  ++
Sbjct: 439 MYQHK 443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  132 bits (334), Expect = 6e-33
 Identities = 58/335 (17%), Positives = 121/335 (36%), Gaps = 17/335 (5%)

Query: 117 SVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRF--L 174
           ++ +     ++ ++  ++ ++L   L +   S   +     + N  S      +  F  L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 175 RNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEI 234
             L+LS N L   + ++ L    L+T+DL+ N ++  L     P++  L    N  I  +
Sbjct: 61  ELLNLSSNVLYETLDLESL--STLRTLDLNNNYVQ-ELLVG--PSIETLHAANN-NISRV 114

Query: 235 PSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNG-SLPIQLGSLGIL 293
             +     +    + L NN  T +     G    +  L+L  NE++  +      S   L
Sbjct: 115 SCSRGQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 294 QVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNG 353
           + +NLQ N +  ++  Q      L T+++S N L+  +     +   +  ++LR N L  
Sbjct: 172 EHLNLQYNFIY-DVKGQ-VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 354 SIPNSITNMRSLIELQLGGNQLS-GTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLE 412
            I  ++   ++L    L GN    GT+     + Q    ++    +              
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 413 VLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSG 447
           +                 ++  L +         G
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG 322

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  113 bits (284), Expect = 2e-26
 Identities = 45/352 (12%), Positives = 111/352 (31%), Gaps = 16/352 (4%)

Query: 10  LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGF 69
           ++ L+ + N +  +   +   G + +  ++N +    +L       ++ L+L  N+ +  
Sbjct: 101 IETLHAANNNISRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159

Query: 70  -LPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKL 128
                   +  LE L L  N  + ++   +  +  L  +DLS+N L+  +       + +
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGV 216

Query: 129 EVLILSANNLDGRLPTSLASITTLSRFAANQNKFS-GSVPGGITRFLRNLDLSYNKLLGV 187
             + L  N L   +  +L     L  F    N F  G++    ++  R   ++   +  +
Sbjct: 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275

Query: 188 IPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLL-------IGEIPSATFT 240
              +                 E  LP   +  L+ L+   + L          +      
Sbjct: 276 TGQNEEECTVPTLGHYGAYCCE-DLPAPFADRLIALKRKEHALLSGQGSETERLECERE- 333

Query: 241 SLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQL 300
           +  +   ++     +  +I Q     ++   L   +  L+  +     +   L     Q 
Sbjct: 334 NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQA 393

Query: 301 NKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLN 352
                   +   Q  L     I        +         + + ++ Q+   
Sbjct: 394 VGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  106 bits (265), Expect = 4e-24
 Identities = 39/219 (17%), Positives = 83/219 (37%), Gaps = 15/219 (6%)

Query: 239 FTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNL 298
             +  +    ++ ++S    +     S  ++  L+L+ N L+      L     L+++NL
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 299 QLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNS 358
             N L          L  L T++++ N +       L    ++  L+   NN++  +  S
Sbjct: 66  SSNVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVSCS 117

Query: 359 ITNMRSLIELQLGGNQLSGTIPMMPPRLQ--IALNLSSNLFEG-PIPTTFARLNGLEVLD 415
               +    + L  N+++    +          L+L  N  +        A  + LE L+
Sbjct: 118 R--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 416 LSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSK 454
           L  N    ++         L  L L++N+L+ + P+F  
Sbjct: 176 LQYNFIY-DVKG-QVVFAKLKTLDLSSNKLAFMGPEFQS 212

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 99.5 bits (248), Expect = 5e-22
 Identities = 36/191 (18%), Positives = 66/191 (34%), Gaps = 9/191 (4%)

Query: 259 IPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLS 318
           I +   +     +  +  + L  +L     S   ++ ++L  N LS    +  +    L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 319 TMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGT 378
            +N+S N L         +L+ L  L+L  N +       +    S+  L    N +S  
Sbjct: 62  LLNLSSNVLY-ETLDL-ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRV 114

Query: 379 IPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSG-EIPQLLAQMPTLTQ 437
                   +  + L++N             + ++ LDL  N        +L A   TL  
Sbjct: 115 SCSRGQGKKN-IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 438 LLLTNNQLSGV 448
           L L  N +  V
Sbjct: 174 LNLQYNFIYDV 184

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  145 bits (367), Expect = 3e-37
 Identities = 81/359 (22%), Positives = 139/359 (38%), Gaps = 55/359 (15%)

Query: 93  EIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTL 152
            +P+GI       L+DL  N +     D       LE L L+ N            ++ +
Sbjct: 25  AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-----------VSAV 71

Query: 153 SRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSH-PNLQTIDLSVNMLEGS 211
              A     F+          LR L L  N+L  +IP+ + +   NL  +D+S N +   
Sbjct: 72  EPGA-----FNN------LFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLDISENKIV-I 118

Query: 212 LPQNM---SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRS 268
           L   M     NL  L +G N  +  I    F+ L  L  L L+  + T +  + L     
Sbjct: 119 LLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177

Query: 269 LTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLS 328
           L +L L    +N         L  L+V+ +        +         L++++I+  +L+
Sbjct: 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237

Query: 329 GSIPSF-LSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQ 387
            ++P   + +L  L  LNL  N ++    + +  +  L E+QL G QL+  +        
Sbjct: 238 -AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVE------- 288

Query: 388 IALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLS 446
                         P  F  LN L VL++S N+ +     +   +  L  L+L +N L+
Sbjct: 289 --------------PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  131 bits (332), Expect = 1e-32
 Identities = 76/365 (20%), Positives = 127/365 (34%), Gaps = 54/365 (14%)

Query: 16  SKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLG 75
            +   V++P         +LD   N +      +F     L+ L L++N  +   P    
Sbjct: 19  HRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN 77

Query: 76  KTKALEELVLSGNAFHGEIPKGI-ADYRNLTLIDLSANNLSGSVPDRI-GELSKLEVLIL 133
               L  L L  N     IP G+     NLT +D+S N +   + D +  +L  L+ L +
Sbjct: 78  NLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEV 135

Query: 134 SANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLL 193
             N+           +  +S  A     FSG         L  L L     L  IP + L
Sbjct: 136 GDND-----------LVYISHRA-----FSG------LNSLEQLTLEKCN-LTSIPTEAL 172

Query: 194 SH-PNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDN 252
           SH   L  + L    +                         I   +F  L +L  LE+ +
Sbjct: 173 SHLHGLIVLRLRHLNIN-----------------------AIRDYSFKRLYRLKVLEISH 209

Query: 253 NSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFS 312
             +   +        +LT L++    L     + +  L  L+ +NL  N +S    S   
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269

Query: 313 QLKLLSTMNISWNSLSGSIPSF-LSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLG 371
           +L  L  + +    L+  +  +    L  L  LN+  N L     +   ++ +L  L L 
Sbjct: 270 ELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328

Query: 372 GNQLS 376
            N L+
Sbjct: 329 SNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  123 bits (311), Expect = 5e-30
 Identities = 65/302 (21%), Positives = 113/302 (37%), Gaps = 33/302 (10%)

Query: 10  LKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFN 67
           L+ L  ++N + ++    FN    L  L   SN L       F  L +L  L++S+NK  
Sbjct: 58  LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117

Query: 68  GFLPINLGKTKALEELVLSGNAFHGEIPKGI-ADYRNLTLIDLSANNLSGSVPDRIGELS 126
             L         L+ L +  N     I     +   +L  + L   NL+    + +  L 
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176

Query: 127 KLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLG 186
            L VL L   N           I  +  ++     F           L+ L++S+   L 
Sbjct: 177 GLIVLRLRHLN-----------INAIRDYS-----FKR------LYRLKVLEISHWPYLD 214

Query: 187 VIPIDLLSHPNLQTIDLSVNMLEGSLPQNM---SPNLVRLRLGTNLLIGEIPSATFTSLE 243
            +  + L   NL ++ ++   L  ++P         L  L L  N  I  I  +    L 
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELL 272

Query: 244 KLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQL-GSLGILQVMNLQLNK 302
           +L  ++L       + P        L +LN++ N+L  +L   +  S+G L+ + L  N 
Sbjct: 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNP 331

Query: 303 LS 304
           L+
Sbjct: 332 LA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  119 bits (299), Expect = 2e-28
 Identities = 55/255 (21%), Positives = 97/255 (38%), Gaps = 28/255 (10%)

Query: 196 PNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSF 255
              + +         ++P+ +      L LG N  I  +    F S   L  LEL+ N  
Sbjct: 11  AQDRAVLCHRKRFV-AVPEGIPTETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIV 68

Query: 256 TGMIPQQLGSCRSLTLLNLAQNELNGSLPIQ-LGSLGILQVMNLQLNKLSGEIPSQFSQL 314
           + + P    +  +L  L L  N L   +P+     L  L  +++  NK+   +   F  L
Sbjct: 69  SAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127

Query: 315 KLLSTMNISWNSLSGSIPS-FLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGN 373
             L ++ +  N L   I     S L +L  L L + NL      +++++  LI L+L   
Sbjct: 128 YNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186

Query: 374 QLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMP 433
            ++  I                        +F RL  L+VL++S+  +   +        
Sbjct: 187 NIN-AIR---------------------DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224

Query: 434 TLTQLLLTNNQLSGV 448
            LT L +T+  L+ V
Sbjct: 225 NLTSLSITHCNLTAV 239

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 99.8 bits (249), Expect = 4e-22
 Identities = 55/257 (21%), Positives = 87/257 (33%), Gaps = 33/257 (12%)

Query: 6   GIDGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSK 63
           G+  L  L+ S+N++V L    F     L+ L+   N+L    +  F  L SL+ L L K
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161

Query: 64  NKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGI-ADYRNLTLIDLSANNLSGSVPDRI 122
                     L     L  L L     +  I          L ++++S      ++    
Sbjct: 162 CNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 123 GELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYN 182
                L  L ++  N           +T +   A                +LR L+LSYN
Sbjct: 221 LYGLNLTSLSITHCN-----------LTAVPYLA-----VRH------LVYLRFLNLSYN 258

Query: 183 KLLGVIPIDLLSH-PNLQTIDLSVNMLEGSLPQNM---SPNLVRLRLGTNLLIGEIPSAT 238
             +  I   +L     LQ I L    L   +          L  L +  N  +  +  + 
Sbjct: 259 P-ISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGN-QLTTLEESV 315

Query: 239 FTSLEKLTYLELDNNSF 255
           F S+  L  L LD+N  
Sbjct: 316 FHSVGNLETLILDSNPL 332

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  141 bits (357), Expect = 4e-37
 Identities = 62/344 (18%), Positives = 107/344 (31%), Gaps = 44/344 (12%)

Query: 116 GSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLR 175
           GS        S  E L    +         L+          N+   +           +
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS--NNPQ 59

Query: 176 NLDLSYNKLLGVIP-IDLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIG 232
               +   L      ++  + P    ++L    L    P       +L  + +    L+ 
Sbjct: 60  IETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM- 117

Query: 233 EIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGI 292
           E+P  T      L  L L  N     +P  + S   L  L++        LP  L S   
Sbjct: 118 ELPD-TMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 293 ---------LQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVN 343
                    LQ + L+   +   +P+  + L+ L ++ I  + LS ++   + +L  L  
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEE 233

Query: 344 LNLRQNNLNGSIPNSITNMRSLIELQL-GGNQLSGTIPMMPPRLQIALNLSSNLFEGPIP 402
           L+LR      + P        L  L L   + L                         +P
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT-----------------------LP 270

Query: 403 TTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLS 446
               RL  LE LDL        +P L+AQ+P    +L+  +  +
Sbjct: 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  132 bits (335), Expect = 4e-34
 Identities = 49/318 (15%), Positives = 108/318 (33%), Gaps = 24/318 (7%)

Query: 73  NLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLI 132
           +   +   E L   G+         ++ ++     D +  +       R    +  ++  
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIET 62

Query: 133 LSANNLDGRLPTSL--ASITTLSRFAANQNKFSGSVPGGITRF--LRNLDLSYNKLLGVI 188
            +   L       L  A+                  P    R   L+++ +    L   +
Sbjct: 63  RTGRAL-KATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-MEL 119

Query: 189 PIDLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEIPS--------AT 238
           P  +     L+T+ L+ N L  +LP +++    L  L +     + E+P           
Sbjct: 120 PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 239 FTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNL 298
              L  L  L L+       +P  + + ++L  L +  + L+ +L   +  L  L+ ++L
Sbjct: 179 HQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDL 236

Query: 299 QLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNS 358
           +        P  F     L  + +   S   ++P  +  LT L  L+LR       +P+ 
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

Query: 359 ITNMRSLIELQLGGNQLS 376
           I  + +   + +  +  +
Sbjct: 297 IAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  119 bits (300), Expect = 2e-29
 Identities = 59/342 (17%), Positives = 106/342 (30%), Gaps = 50/342 (14%)

Query: 31  GLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAF 90
           G E L F  +     +    D L   +    +              +   +    +G A 
Sbjct: 13  GRENLYFQGST---ALRPYHDVLSQWQRHYNADRNRWH-SAWRQANSNNPQIETRTGRAL 68

Query: 91  HGEIPKGIADYR--NLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLAS 148
                  + D        ++L +  L    PD+   LS L+ + + A  L   LP ++  
Sbjct: 69  K-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ 125

Query: 149 ITTLSRFAANQNKFSGSVPGGITRF--LRNLDLSYNKLLGVIPIDLLSHP---------N 197
              L      +N    ++P  I     LR L +     L  +P  L S           N
Sbjct: 126 FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

Query: 198 LQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSF 255
           LQ++ L    +  SLP +++   NL  L++  + L   +       L KL  L+L   + 
Sbjct: 185 LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGP-AIHHLPKLEELDLRGCTA 241

Query: 256 TGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLK 315
               P   G    L  L L                          + L   +P    +L 
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDC-----------------------SNLL-TLPLDIHRLT 277

Query: 316 LLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPN 357
            L  +++        +PS ++ L     + +  +       +
Sbjct: 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  113 bits (286), Expect = 1e-27
 Identities = 48/295 (16%), Positives = 93/295 (31%), Gaps = 20/295 (6%)

Query: 11  KLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNIN-LQFDELVSLKSLNLSKNKFNGF 69
           +  N  +N   S          ++   +   L    + L+        +L L        
Sbjct: 37  RHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-Q 95

Query: 70  LPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLE 129
            P    +   L+ + +       E+P  +  +  L  + L+ N L  ++P  I  L++L 
Sbjct: 96  FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLR 153

Query: 130 VLILSANNLDGRLPTSLASI---------TTLSRFAANQNKFSGSVPGGITRF--LRNLD 178
            L + A      LP  LAS            L            S+P  I     L++L 
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLK 212

Query: 179 LSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEIPS 236
           +  + L   +   +   P L+ +DL       + P        L RL L     +  +P 
Sbjct: 213 IRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271

Query: 237 ATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLG 291
                L +L  L+L        +P  +    +  ++ +  +        +  +  
Sbjct: 272 -DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.5 bits (233), Expect = 9e-21
 Identities = 39/243 (16%), Positives = 72/243 (29%), Gaps = 25/243 (10%)

Query: 217 SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQ 276
           S     L    +  +          L +       + +       +  +  +  +     
Sbjct: 11  SSGRENLYFQGSTALRPYHD----VLSQWQRHYNADRNRWH-SAWRQANSNNPQIETRTG 65

Query: 277 NELNGSLP--IQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSF 334
             L  +    ++  +      + L+   L  + P Q  +L  L  M I    L   +P  
Sbjct: 66  RALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDT 122

Query: 335 LSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSS 394
           +     L  L L +N L  ++P SI ++  L EL +        +P              
Sbjct: 123 MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP-------------E 168

Query: 395 NLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSK 454
            L           L  L+ L L        +P  +A +  L  L + N+ LS + P    
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHH 227

Query: 455 WVS 457
              
Sbjct: 228 LPK 230

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.1 bits (193), Expect = 1e-15
 Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 5/143 (3%)

Query: 10  LKLLNFSKNELVSLP-TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNG 68
           L+ L      + SLP +      L+ L   ++ L+  +      L  L+ L+L       
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALR 243

Query: 69  FLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKL 128
             P   G    L+ L+L   +    +P  I     L  +DL        +P  I +L   
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303

Query: 129 EVLILSAN---NLDGRLPTSLAS 148
            ++++  +    LD   P +  +
Sbjct: 304 CIILVPPHLQAQLDQHRPVARPA 326

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  142 bits (361), Expect = 4e-37
 Identities = 68/366 (18%), Positives = 142/366 (38%), Gaps = 21/366 (5%)

Query: 13  LNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPI 72
           ++    ++            +++ F ++ +        D    ++ LNL+  +       
Sbjct: 28  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY 87

Query: 73  NLGKTKALEELVLSGNAFHGEIPKGI-ADYRNLTLIDLSANNLSGSVPDRI-GELSKLEV 130
                  +++L +  NA    +P  +  +   LT++ L  N+LS S+P  I     KL  
Sbjct: 88  AFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTT 145

Query: 131 LILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPI 190
           L +S NNL+     +  + T+L     + N+ +  V   +   L + ++SYN L      
Sbjct: 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANVSYNLL-----S 199

Query: 191 DLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLEL 250
            L     ++ +D S N +   +   ++  L  L+L  N L  +       +   L  ++L
Sbjct: 200 TLAIPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNNLT-DTA--WLLNYPGLVEVDL 255

Query: 251 DNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQ 310
             N    ++       + L  L ++ N L  +L +    +  L+V++L  N L   +   
Sbjct: 256 SYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERN 313

Query: 311 FSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQL 370
             Q   L  + +  NS+  ++   LS    L NL L  N+ + +   ++   R++    +
Sbjct: 314 QPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAV 368

Query: 371 GGNQLS 376
                 
Sbjct: 369 DDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  136 bits (345), Expect = 5e-35
 Identities = 66/358 (18%), Positives = 125/358 (34%), Gaps = 23/358 (6%)

Query: 32  LEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFH 91
              +       +     +   L + K +    +         L   + +E L L+     
Sbjct: 23  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82

Query: 92  GEIPKGI-ADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASIT 150
            EI     A    +  + +  N +    P     +  L VL+L  N+L         +  
Sbjct: 83  -EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP 141

Query: 151 TLSRFAANQNKFSGSVPGGI---TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNM 207
            L+  + + N     +       T  L+NL LS N+L   + + L+  P+L   ++S N+
Sbjct: 142 KLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI--PSLFHANVSYNL 197

Query: 208 LEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCR 267
           L  +L       +  L    N  I  +          LT L+L +N+ T      L +  
Sbjct: 198 LS-TLAIP--IAVEELDASHN-SINVVRGPVNVE---LTILKLQHNNLTD--TAWLLNYP 248

Query: 268 SLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSL 327
            L  ++L+ NEL   +      +  L+ + +  N+L   +      +  L  +++S N L
Sbjct: 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL 307

Query: 328 SGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPR 385
              +         L NL L  N++  ++   ++   +L  L L  N           R
Sbjct: 308 L-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFR 361

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  127 bits (321), Expect = 9e-32
 Identities = 63/280 (22%), Positives = 117/280 (41%), Gaps = 21/280 (7%)

Query: 174 LRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNM---SPNLVRLRLGTNLL 230
            + +    + +  +    L S   ++ ++L+   +E  +       +  + +L +G N  
Sbjct: 47  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNA- 104

Query: 231 IGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSL 290
           I  +P   F ++  LT L L+ N  + +      +   LT L+++ N L         + 
Sbjct: 105 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 164

Query: 291 GILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNN 350
             LQ + L  N+L+  +    S +  L   N+S+N LS      L+    +  L+   N+
Sbjct: 165 TSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNS 216

Query: 351 LNGSIPNSITNMRSLIELQLGGNQLSGTIPMMP--PRLQIALNLSSNLFEGPIPTTFARL 408
           +N  +   +     L  L+L  N L+     +   P L   ++LS N  E  +   F ++
Sbjct: 217 IN-VVRGPV--NVELTILKLQHNNLT-DTAWLLNYPGLVE-VDLSYNELEKIMYHPFVKM 271

Query: 409 NGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGV 448
             LE L +SNNR    +      +PTL  L L++N L  V
Sbjct: 272 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHV 310

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  121 bits (306), Expect = 6e-30
 Identities = 55/288 (19%), Positives = 107/288 (37%), Gaps = 18/288 (6%)

Query: 174 LRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNM---SPNLVRLRLGTNLL 230
             ++ +           + ++  N + +    + +   LP  +      +  L L     
Sbjct: 23  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQ- 80

Query: 231 IGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQL-GS 289
           I EI +  F     +  L +  N+   + P    +   LT+L L +N+L+ SLP  +  +
Sbjct: 81  IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHN 139

Query: 290 LGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQN 349
              L  +++  N L       F     L  + +S N L+  +   LS + +L + N+  N
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYN 196

Query: 350 NLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLN 409
            L+     ++    ++ EL    N ++     +   L I L L  N              
Sbjct: 197 LLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTI-LKLQHNNLTDT--AWLLNYP 248

Query: 410 GLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVS 457
           GL  +DLS N     +     +M  L +L ++NN+L  +        +
Sbjct: 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT 296

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  101 bits (253), Expect = 5e-23
 Identities = 52/237 (21%), Positives = 92/237 (38%), Gaps = 10/237 (4%)

Query: 211 SLPQNMSPNLVRLRLGTNLLIGEIPSA-TFTSLEKLTYLELDNNSFTGMIPQQLGSCRSL 269
            +  N+  + V   +  ++   ++       +L     +   N++   +    L S R +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 270 TLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSG 329
            LLNL   ++             +Q + +  N +    P  F  + LL+ + +  N LS 
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131

Query: 330 SIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIA 389
                  N   L  L++  NNL     ++     SL  LQL  N+L+     + P L   
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH- 190

Query: 390 LNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLS 446
            N+S NL      +T A    +E LD S+N  +  +   +     LT L L +N L+
Sbjct: 191 ANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT 239

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 76.6 bits (189), Expect = 5e-15
 Identities = 41/224 (18%), Positives = 76/224 (33%), Gaps = 21/224 (9%)

Query: 235 PSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTL-----LNLAQNELNGSLPIQLGS 289
           P                +                +TL     +    + +       L S
Sbjct: 8   PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS 67

Query: 290 LGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQN 349
              ++++NL   ++       F+    +  + + +N++    P    N+  L  L L +N
Sbjct: 68  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127

Query: 350 NLNGSIPNSI-TNMRSLIELQLGGNQLSGTIPMMP----PRLQIALNLSSNLFEGPIPTT 404
           +L+ S+P  I  N   L  L +  N L   I          LQ  L LSSN     +   
Sbjct: 128 DLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQN-LQLSSNRLTH-VD-- 181

Query: 405 FARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGV 448
            + +  L   ++S N  S      LA    + +L  ++N ++ V
Sbjct: 182 LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVV 220

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 75.9 bits (187), Expect = 1e-14
 Identities = 46/199 (23%), Positives = 71/199 (35%), Gaps = 13/199 (6%)

Query: 5   GGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKN 64
             I  L   N S N L +L        +E LD S N++N    ++    V L  L L  N
Sbjct: 183 SLIPSLFHANVSYNLLSTLA---IPIAVEELDASHNSIN---VVRGPVNVELTILKLQHN 236

Query: 65  KFNGFLPINLGKTKALEELVLSGNAFHGEIPKGI-ADYRNLTLIDLSANNLSGSVPDRIG 123
                    L     L E+ LS N    +I        + L  + +S N L  ++     
Sbjct: 237 NLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ 292

Query: 124 ELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNK 183
            +  L+VL LS N+L   +  +      L     + N    ++       L+NL LS+N 
Sbjct: 293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKNLTLSHND 350

Query: 184 LLGVIPIDLLSHPNLQTID 202
                   L  +     +D
Sbjct: 351 WDCNSLRALFRNVARPAVD 369

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  139 bits (353), Expect = 4e-35
 Identities = 90/457 (19%), Positives = 157/457 (34%), Gaps = 38/457 (8%)

Query: 10  LKLLNFSKNELVSLPT--FNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFN 67
             +LN S+N +  L T      + L +L  S N +       F     L+ L+LS NK  
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 68  GFLPINLGKTKALEELVLSGNAFHGEIPKGIADY-RNLTLIDLSANNLSGSVPDRIGELS 126
               I+   T  L+ L LS NAF              L  + LS  +L  S    I  L+
Sbjct: 83  K---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139

Query: 127 KLEVLILSANNLDGRL-PTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLL 185
             +VL++       +  P  L    T S                         +    + 
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHF------------ILDVSVK 187

Query: 186 GVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEK- 244
            V  ++L +   +   +     L        +P L  L L                +   
Sbjct: 188 TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247

Query: 245 -LTYLELDNNSFTGMIPQQLG-----SCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNL 298
            + Y  + N    G +  +       S ++L++  +  +               + + N 
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNF 307

Query: 299 QLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNS 358
            ++          S++     ++ S N L+ ++     +LT L  L L+ N L   +   
Sbjct: 308 TVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKI 366

Query: 359 I---TNMRSLIELQLGGNQLSGTIP----MMPPRLQIALNLSSNLFEGPIPTTFARLNGL 411
               T M+SL +L +  N +S             L   LN+SSN+    I         +
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS-LNMSSNILTDTIFRCLPPR--I 423

Query: 412 EVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGV 448
           +VLDL +N+    IP+ + ++  L +L + +NQL  V
Sbjct: 424 KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSV 459

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  128 bits (323), Expect = 2e-31
 Identities = 74/446 (16%), Positives = 150/446 (33%), Gaps = 26/446 (5%)

Query: 12  LLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLP 71
           L++ SKN L+ +P  +      +L+ S N ++         L  L+ L +S N+      
Sbjct: 4   LVDRSKNGLIHVPK-DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI 62

Query: 72  INLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPD--RIGELSKLE 129
                 + LE L LS N    +I        NL  +DLS N    ++P     G +S+L+
Sbjct: 63  SVFKFNQELEYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLK 118

Query: 130 VLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIP 189
            L LS  +L+      +A +            +         +      L          
Sbjct: 119 FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178

Query: 190 IDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLE 249
             +L        +L ++ ++  L  N            ++L     +   ++L       
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYF------LSILAKLQTNPKLSNLTLNNIET 232

Query: 250 LDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGS--LPIQLGSLGILQVMNLQLNKLSGEI 307
             N+    +      +    ++ N+                SL  L +  +  +      
Sbjct: 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ 292

Query: 308 PSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIE 367
              +     ++  N + +          S ++  ++L+   N L  ++  +  ++  L  
Sbjct: 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352

Query: 368 LQLGGNQLSGTIPMMP------PRLQIALNLSSN-LFEGPIPTTFARLNGLEVLDLSNNR 420
           L L  NQL   +  +         LQ  L++S N +         +    L  L++S+N 
Sbjct: 353 LILQMNQLK-ELSKIAEMTTQMKSLQQ-LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410

Query: 421 FSGEIPQLLAQMPTLTQLLLTNNQLS 446
            +  I + L   P +  L L +N++ 
Sbjct: 411 LTDTIFRCL--PPRIKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  113 bits (283), Expect = 2e-26
 Identities = 79/429 (18%), Positives = 143/429 (33%), Gaps = 43/429 (10%)

Query: 3   SCGGIDGLKLLNFSKNELVSLP---TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSL 59
           SC     LK L+ S N   +LP    F   + L+ L  S+ +L          +  L   
Sbjct: 85  SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE---KSSVLPIAHLNIS 141

Query: 60  NLSKNKFNGFL-PINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSV 118
            +       +    +    +      L       +    I D    T+ +L  +N+   +
Sbjct: 142 KVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201

Query: 119 PDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLD 178
            D         +  L  N     L  +    T  S     Q  +  +        +    
Sbjct: 202 EDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT--------VWYFS 253

Query: 179 LSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSAT 238
           +S  KL G +      +       LS++ +                   + + G   S  
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQV------------------VSDVFGFPQSYI 295

Query: 239 FTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNL 298
           +     +       +    +             L+ + N L  ++    G L  L+ + L
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355

Query: 299 QLNKLS--GEIPSQFSQLKLLSTMNISWNSLSGSIPS-FLSNLTNLVNLNLRQNNLNGSI 355
           Q+N+L    +I    +Q+K L  ++IS NS+S        S   +L++LN+  N L  +I
Sbjct: 356 QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI 415

Query: 356 PNSITNMRSLIELQLGGNQLSGTIPMMP---PRLQIALNLSSNLFEGPIPTTFARLNGLE 412
              +     +  L L  N++  +IP        LQ  LN++SN  +      F RL  L+
Sbjct: 416 FRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQE-LNVASNQLKSVPDGIFDRLTSLQ 471

Query: 413 VLDLSNNRF 421
            + L  N +
Sbjct: 472 KIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 94.2 bits (234), Expect = 3e-20
 Identities = 47/339 (13%), Positives = 106/339 (31%), Gaps = 43/339 (12%)

Query: 165 SVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEG-------------- 210
            VP  +++    L++S N +  +   D+LS   L+ + +S N ++               
Sbjct: 14  HVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEY 73

Query: 211 ---------SLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQ 261
                     +  + + NL  L L  N          F ++ +L +L L           
Sbjct: 74  LDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133

Query: 262 QLGSCRSLTLL-----NLAQNELNGSLP-IQLGSLGILQVMNLQLNKLSGEIPSQFSQLK 315
            +       +L        + E    L      SL I+   N + + +        + L+
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 316 LLSTMNISWNSLSGSIPSFLSNLTNLV---NLNLRQNNLNGSIPNSITNM---RSLIELQ 369
           L +   +  ++      S L+ L       NL L       +    I  +    ++    
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253

Query: 370 LGGNQLSGTIPMMPPRLQ-------IALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFS 422
           +   +L G +                   + S++F  P    +   + + + + + +   
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313

Query: 423 GEIPQLLAQMPTLTQLLLTNNQLSGVVPK-FSKWVSVDT 460
                  +++     L  +NN L+  V +       ++T
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 88.4 bits (219), Expect = 2e-18
 Identities = 74/373 (19%), Positives = 134/373 (35%), Gaps = 38/373 (10%)

Query: 10  LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNI------NLQFDELVSLKSLNLSK 63
           LK L  S   L         A L +                   LQ     SL  +  + 
Sbjct: 117 LKFLGLSTTHLEKSS-VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175

Query: 64  NKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGI---------ADYRNLTLIDLSANNL 114
            +F+  L +++     LE   +       +    +             NLTL ++     
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

Query: 115 SGSVPDRIGELSKLEVLILSANNLDG-----RLPTSLASITTLSRFAANQNKFSGSVPGG 169
           S     ++   + +    +S   L G         S  S+  LS      + F       
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295

Query: 170 ITRF----LRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRL 223
              F    ++N  +S  +++ ++    +S      +D S N+L  ++ +N      L  L
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKIS--PFLHLDFSNNLLTDTVFENCGHLTELETL 353

Query: 224 RLGTNLLIGEIPSAT--FTSLEKLTYLELDNNSFTGMIPQQL-GSCRSLTLLNLAQNELN 280
            L  N L  E+       T ++ L  L++  NS +    +      +SL  LN++ N L 
Sbjct: 354 ILQMNQL-KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412

Query: 281 GSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIP-SFLSNLT 339
            ++   L     ++V++L  NK+   IP Q  +L+ L  +N++ N L  S+P      LT
Sbjct: 413 DTIFRCLPPR--IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLT 468

Query: 340 NLVNLNLRQNNLN 352
           +L  + L  N  +
Sbjct: 469 SLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.2 bits (164), Expect = 9e-12
 Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 8/167 (4%)

Query: 1   MQSCGGIDGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLN--GNINLQFDELVSL 56
           M     I     L+FS N L             LE L    N L     I     ++ SL
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376

Query: 57  KSLNLSKNKFNGFLPINL-GKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLS 115
           + L++S+N  +          TK+L  L +S N     I + +     + ++DL +N + 
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK 434

Query: 116 GSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKF 162
            S+P ++ +L  L+ L +++N L          +T+L +   + N +
Sbjct: 435 -SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 62.2 bits (151), Expect = 3e-10
 Identities = 38/204 (18%), Positives = 72/204 (35%), Gaps = 9/204 (4%)

Query: 246 TYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSG 305
             ++   N     +P+ L      T+LN++QN ++      + SL  L+++ +  N++  
Sbjct: 3   FLVDRSKNGLI-HVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY 59

Query: 306 EIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNS--ITNMR 363
              S F   + L  +++S N L   I        NL +L+L  N  + ++P      NM 
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLV-KISC--HPTVNLKHLDLSFNAFD-ALPICKEFGNMS 115

Query: 364 SLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSG 423
            L  L L    L  +  +    L I+  L               L       L     + 
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175

Query: 424 EIPQLLAQMPTLTQLLLTNNQLSG 447
           +    +  +   T   L  + +  
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKC 199

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  141 bits (356), Expect = 4e-35
 Identities = 82/364 (22%), Positives = 129/364 (35%), Gaps = 41/364 (11%)

Query: 80  LEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLD 139
              L +  +     +P  +    ++T + +  NNL+ S+P       +L  L +S N L 
Sbjct: 42  NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT 94

Query: 140 GRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQ 199
             LP     +  LS F+           G     L  L +  N+L   +P+     P LQ
Sbjct: 95  -SLPVLPPGLLELSIFSNPLTHLPALPSG-----LCKLWIFGNQL-TSLPVLP---PGLQ 144

Query: 200 TIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMI 259
            + +S N L  SLP   S  L +L    N L   +P         L  L + +N     +
Sbjct: 145 ELSVSDNQLA-SLPALPS-ELCKLWAYNNQLT-SLPM----LPSGLQELSVSDNQLA-SL 196

Query: 260 PQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLST 319
           P        L   N   N L  SLP     L  L V   +L      +P   S+LK L  
Sbjct: 197 PTLPSELYKLWAYN---NRLT-SLPALPSGLKELIVSGNRLT----SLPVLPSELKEL-- 246

Query: 320 MNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTI 379
             +S N L+ S+P   S L +L   ++ +N L   +P S+ ++ S   + L GN LS   
Sbjct: 247 -MVSGNRLT-SLPMLPSGLLSL---SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 300

Query: 380 PMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLL 439
                 +  A   S  +    +    A      +   + +          A         
Sbjct: 301 LQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFG 360

Query: 440 LTNN 443
             +N
Sbjct: 361 QEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  130 bits (327), Expect = 2e-31
 Identities = 89/431 (20%), Positives = 144/431 (33%), Gaps = 66/431 (15%)

Query: 8   DGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFN 67
           +G  +LN  ++ L +LP     A +  L    NNL                         
Sbjct: 40  NGNAVLNVGESGLTTLPD-CLPAHITTLVIPDNNLT------------------------ 74

Query: 68  GFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSK 127
             LP    +   L  L +SGN     +P        L++      +L           S 
Sbjct: 75  -SLPALPPE---LRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-------ALPSG 122

Query: 128 LEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGV 187
           L  L +  N L   LP     +  LS    + N+ + S+P   +  L  L    N+ L  
Sbjct: 123 LCKLWIFGNQL-TSLPVLPPGLQELS---VSDNQLA-SLPALPSE-LCKLWAYNNQ-LTS 175

Query: 188 IPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTY 247
           +P+       LQ + +S N L  SLP   S  L +L    N L   +P+        L  
Sbjct: 176 LPMLP---SGLQELSVSDNQLA-SLPTLPS-ELYKLWAYNNRLT-SLPA----LPSGLKE 225

Query: 248 LELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEI 307
           L +  N  T  +P        L  L ++ N L  SLP+       L  +++  N+L+  +
Sbjct: 226 LIVSGNRLTS-LPVLPS---ELKELMVSGNRLT-SLPMLPSG---LLSLSVYRNQLT-RL 276

Query: 308 PSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIE 367
           P     L   +T+N+  N LS      L  +T+    +      + +  ++    R+L  
Sbjct: 277 PESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHL 336

Query: 368 LQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQ 427
                + L       P                       RL+  E   + +  F  +I  
Sbjct: 337 AAA--DWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETE-NFIKDAGFKAQISS 393

Query: 428 LLAQMPTLTQL 438
            LAQ+     L
Sbjct: 394 WLAQLAEDEAL 404

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  106 bits (266), Expect = 6e-24
 Identities = 68/314 (21%), Positives = 112/314 (35%), Gaps = 36/314 (11%)

Query: 7   IDGLKLLNFSKNELVSLP-TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNK 65
              L+ L  S N+L SLP    G   L +      +L             L  L +  N+
Sbjct: 80  PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFGNQ 132

Query: 66  FNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGEL 125
               LP+       L+EL +S N     +P   +    L  +    N L+ S+P      
Sbjct: 133 LT-SLPVLPP---GLQELSVSDNQL-ASLPALPS---ELCKLWAYNNQLT-SLPM---LP 180

Query: 126 SKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLL 185
           S L+ L +S N L   LPT  + +  L  +    N+ + S+P   +  L+ L +S N+ L
Sbjct: 181 SGLQELSVSDNQL-ASLPTLPSELYKLWAY---NNRLT-SLPALPSG-LKELIVSGNR-L 233

Query: 186 GVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKL 245
             +P+       L+ + +S N L  SLP   S  L+ L +  N L   +P  +   L   
Sbjct: 234 TSLPVLP---SELKELMVSGNRLT-SLPMLPS-GLLSLSVYRNQLT-RLP-ESLIHLSSE 286

Query: 246 TYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSG 305
           T + L+ N  +    Q L    S    +      + +          L       + L  
Sbjct: 287 TTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH--LAAADWLVP 344

Query: 306 EIPSQFSQLKLLST 319
               + +       
Sbjct: 345 AREGEPAPADRWHM 358

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  133 bits (336), Expect = 3e-34
 Identities = 70/332 (21%), Positives = 125/332 (37%), Gaps = 47/332 (14%)

Query: 103 NLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKF 162
           +L ++  S   L   VP  +       +L L  N            IT +         F
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNK-----------ITEIKDGD-----F 72

Query: 163 SGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVR 222
                    + L  L L  NK+  + P        L+ + LS N L+  LP+ M   L  
Sbjct: 73  KN------LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQE 125

Query: 223 LRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFT--GMIPQQLGSCRSLTLLNLAQNELN 280
           LR+  N  I ++  + F  L ++  +EL  N     G+        + L+ + +A   + 
Sbjct: 126 LRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184

Query: 281 GSLPIQLGSLGILQVMNLQLNKLSGEIPSQ-FSQLKLLSTMNISWNSLSGSIPSFLSNLT 339
               I  G    L  ++L  NK++ ++ +     L  L+ + +S+NS+S      L+N  
Sbjct: 185 T---IPQGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240

Query: 340 NLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLS---------GTIPMMPPRLQIAL 390
           +L  L+L  N L   +P  + + + +  + L  N +S                      +
Sbjct: 241 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG-V 298

Query: 391 NLSSN-LFEGPI-PTTFARLNGLEVLDLSNNR 420
           +L SN +    I P+TF  +     + L N +
Sbjct: 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  115 bits (289), Expect = 4e-28
 Identities = 63/258 (24%), Positives = 107/258 (41%), Gaps = 17/258 (6%)

Query: 197 NLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFT 256
           +L+ +  S   LE  +P+++ P+   L L  N  I EI    F +L+ L  L L NN  +
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 257 GMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKL 316
            + P        L  L L++N+L     +       LQ + +  N+++    S F+ L  
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLKE---LPEKMPKTLQELRVHENEITKVRKSVFNGLNQ 146

Query: 317 LSTMNISWNSLSGSI--PSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQ 374
           +  + +  N L  S         +  L  + +   N+  +IP  +    SL EL L GN+
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNK 203

Query: 375 LSGTIPMMP----PRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLA 430
           ++  +          L   L LS N        + A    L  L L+NN+   ++P  LA
Sbjct: 204 IT-KVDAASLKGLNNLAK-LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260

Query: 431 QMPTLTQLLLTNNQLSGV 448
               +  + L NN +S +
Sbjct: 261 DHKYIQVVYLHNNNISAI 278

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  112 bits (283), Expect = 3e-27
 Identities = 76/327 (23%), Positives = 124/327 (37%), Gaps = 37/327 (11%)

Query: 55  SLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGI-ADYRNLTLIDLSANN 113
            L+ +  S       +P +L        L L  N    EI  G   + +NL  + L  N 
Sbjct: 32  HLRVVQCSDLGLEK-VPKDLPPD--TALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNK 87

Query: 114 LSGSVPDRIGE-LSKLEVLILSANNLDGRLPTSL-ASITTLSRFAANQ-NKFSGSVPGGI 170
           +S  +       L KLE L LS N L   LP  +  ++  L R   N+  K   SV  G+
Sbjct: 88  IS-KISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQEL-RVHENEITKVRKSVFNGL 144

Query: 171 TRFLRNLDLSYNKL-LGVIPIDLLSH-PNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTN 228
            + +  ++L  N L    I          L  I ++   +  ++PQ + P+L  L L  N
Sbjct: 145 NQ-MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGN 202

Query: 229 LLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLG 288
             I ++ +A+   L  L  L L  NS + +    L +   L  L+L  N+L   +P  L 
Sbjct: 203 K-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260

Query: 289 SLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQ 348
               +QV+ L  N +S                 I  N      P + +   +   ++L  
Sbjct: 261 DHKYIQVVYLHNNNIS----------------AIGSNDFCP--PGYNTKKASYSGVSLFS 302

Query: 349 NNLNGSI--PNSITNMRSLIELQLGGN 373
           N +      P++   +     +QLG  
Sbjct: 303 NPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (264), Expect = 8e-25
 Identities = 60/349 (17%), Positives = 113/349 (32%), Gaps = 80/349 (22%)

Query: 9   GLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKF 66
              LL+   N++  +    F     L  L   +N ++      F  LV L+ L LSKN+ 
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112

Query: 67  NGFLPINLGKTKALEELVLSGNAFHGEIPKGI-ADYRNLTLIDLSANNL-SGSVPDRI-G 123
              LP  +   K L+EL +  N    ++ K +      + +++L  N L S  + +    
Sbjct: 113 KE-LPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 124 ELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNK 183
            + KL  + ++  N+                          ++P G+   L  L L  NK
Sbjct: 169 GMKKLSYIRIADTNIT-------------------------TIPQGLPPSLTELHLDGNK 203

Query: 184 LLGVIPIDLLSH-PNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSL 242
            +  +    L    NL  + LS N                        I  + + +  + 
Sbjct: 204 -ITKVDAASLKGLNNLAKLGLSFN-----------------------SISAVDNGSLANT 239

Query: 243 EKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNK 302
             L  L L+NN     +P  L   + + ++ L  N ++                   +  
Sbjct: 240 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS------------------AIGS 280

Query: 303 LSGEIPSQFSQLKLLSTMNISWNSLSGSI--PSFLSNLTNLVNLNLRQN 349
                P   ++    S +++  N +      PS    +     + L   
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 85.4 bits (212), Expect = 4e-18
 Identities = 45/253 (17%), Positives = 85/253 (33%), Gaps = 51/253 (20%)

Query: 8   DGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQ---FDELVSLKSLNLS 62
             L+ L   +NE+  +    FNG   + V++  +N L  +  ++   F  +  L  + ++
Sbjct: 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK-SSGIENGAFQGMKKLSYIRIA 179

Query: 63  KNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGI-ADYRNLTLIDLSANNLSGSVPDR 121
                  +P  L    +L EL L GN    ++         NL  + LS N++S      
Sbjct: 180 DTNITT-IPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGS 235

Query: 122 IGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSY 181
           +     L  L L+ N L  ++P  LA                         +++ + L  
Sbjct: 236 LANTPHLRELHLNNNKLV-KVPGGLADHK----------------------YIQVVYLHN 272

Query: 182 NKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTN-LLIGEIPSATFT 240
           N +                  +  N            +   + L +N +   EI  +TF 
Sbjct: 273 NNI----------------SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316

Query: 241 SLEKLTYLELDNN 253
            +     ++L N 
Sbjct: 317 CVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 38/208 (18%), Positives = 66/208 (31%), Gaps = 28/208 (13%)

Query: 6   GIDGLKLLNFSKNELVSLP----TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNL 61
           G++ + ++    N L S       F G   L  +  +  N+     +      SL  L+L
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHL 199

Query: 62  SKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGI-ADYRNLTLIDLSANNLSGSVPD 120
             NK       +L     L +L LS N+    +  G  A+  +L  + L+ N L   VP 
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPG 257

Query: 121 RIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLS 180
            + +   ++V+ L  NN           I+ +         F              + L 
Sbjct: 258 GLADHKYIQVVYLHNNN-----------ISAIGSND-----FCPPGYNTKKASYSGVSLF 301

Query: 181 YNKL-LGVIPIDLLSH-PNLQTIDLSVN 206
            N +    I             + L   
Sbjct: 302 SNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  129 bits (326), Expect = 4e-33
 Identities = 60/345 (17%), Positives = 125/345 (36%), Gaps = 42/345 (12%)

Query: 80  LEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLD 139
            +   ++ ++    +        N+  +DLS N LS      +   +KLE+L LS+N L 
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL- 70

Query: 140 GRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQ 199
                    + +LS                    LR LDL+ N +      +LL  P+++
Sbjct: 71  ----YETLDLESLST-------------------LRTLDLNNNYV-----QELLVGPSIE 102

Query: 200 TIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGM- 258
           T+  + N +   +  +       + L  N  I  +         ++ YL+L  N    + 
Sbjct: 103 TLHAANNNIS-RVSCSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160

Query: 259 IPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLS 318
             +   S  +L  LNL  N +   +  Q+     L+ ++L  NKL+  +  +F     ++
Sbjct: 161 FAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVT 217

Query: 319 TMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLN-GSIPNSITNMRSLIELQLGGNQLSG 377
            +++  N L   I   L    NL + +LR N  + G++ +  +  + +  +     +   
Sbjct: 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276

Query: 378 TIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFS 422
                   +    +  +   E              ++ L ++   
Sbjct: 277 GQNEEECTVPTLGHYGAYCCEDL-----PAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  126 bits (319), Expect = 3e-32
 Identities = 63/350 (18%), Positives = 120/350 (34%), Gaps = 40/350 (11%)

Query: 50  FDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDL 109
                  K   ++ +     L         ++EL LSGN         +A +  L L++L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 110 SANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGG 169
           S+N L     D +  LS L  L L+ N +       L    ++    A  N  S  V   
Sbjct: 66  SSNVLY-ETLD-LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCS 117

Query: 170 ITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNL 229
             +  +N+ L+ NK+  +  +D      +Q +DL +N ++ ++                 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVN---------------- 160

Query: 230 LIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGS 289
                 +    S + L +L L  N     +  Q+     L  L+L+ N+L   +  +  S
Sbjct: 161 -----FAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQS 212

Query: 290 LGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLS-GSIPSFLSNLTNLVNLNLRQ 348
              +  ++L+ NKL   I       + L   ++  N    G++  F S    +  +  + 
Sbjct: 213 AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271

Query: 349 NNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFE 398
                 +        ++  L   G      +P   P     + L  +   
Sbjct: 272 VK---KLTGQNEEECTVPTLGHYGAYCCEDLP--APFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  113 bits (285), Expect = 1e-27
 Identities = 47/250 (18%), Positives = 91/250 (36%), Gaps = 20/250 (8%)

Query: 212 LPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTL 271
           + QN +      ++  + L  +  ++   S   +  L+L  N  + +    L     L L
Sbjct: 5   IKQNGN-RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 272 LNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSI 331
           LNL+ N L  +L +   SL  L+ ++L  N +      +      + T++ + N++S  +
Sbjct: 63  LNLSSNVLYETLDL--ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RV 114

Query: 332 PSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLS----GTIPMMPPRLQ 387
               S      N+ L  N +             +  L L  N++       +      L+
Sbjct: 115 SC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 388 IALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSG 447
             LNL  N               L+ LDLS+N+ +  +         +T + L NN+L  
Sbjct: 173 H-LNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL 228

Query: 448 VVPKFSKWVS 457
           +        +
Sbjct: 229 IEKALRFSQN 238

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (254), Expect = 1e-23
 Identities = 36/191 (18%), Positives = 66/191 (34%), Gaps = 9/191 (4%)

Query: 259 IPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLS 318
           I +   +     +  +  + L  +L     S   ++ ++L  N LS    +  +    L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 319 TMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGT 378
            +N+S N L         +L+ L  L+L  N +       +    S+  L    N +S  
Sbjct: 62  LLNLSSNVLY-ETLDL-ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRV 114

Query: 379 IPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSG-EIPQLLAQMPTLTQ 437
                   +  + L++N             + ++ LDL  N        +L A   TL  
Sbjct: 115 SCSRGQGKKN-IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 438 LLLTNNQLSGV 448
           L L  N +  V
Sbjct: 174 LNLQYNFIYDV 184

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.1 bits (245), Expect = 2e-22
 Identities = 43/267 (16%), Positives = 87/267 (32%), Gaps = 37/267 (13%)

Query: 10  LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGF 69
           L+LLN S N L         + L  LD ++N +      +     S+++L+ + N  +  
Sbjct: 60  LELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR- 113

Query: 70  LPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSG-SVPDRIGELSKL 128
             ++  + +  + + L+ N               +  +DL  N +   +  +       L
Sbjct: 114 --VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 129 EVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVI 188
           E L L  N +       +      ++                   L+ LDLS NKL   +
Sbjct: 172 EHLNLQYNFI-----YDVKGQVVFAK-------------------LKTLDLSSNKLA-FM 206

Query: 189 PIDLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEIPSATFTSLEKLT 246
             +  S   +  I L  N L   + + +    NL    L  N          F+  +++ 
Sbjct: 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265

Query: 247 YLELDNNSFTGMIPQQLGSCRSLTLLN 273
            +            ++  +  +L    
Sbjct: 266 TVAKQTVKKLTGQNEEECTVPTLGHYG 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 72.7 bits (179), Expect = 5e-14
 Identities = 32/157 (20%), Positives = 52/157 (33%), Gaps = 8/157 (5%)

Query: 9   GLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNG-NINLQFDELVSLKSLNLSKNK 65
           G K +  + N++  L        + ++ LD   N ++  N         +L+ LNL  N 
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 66  FNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGEL 125
               +   +   K L+ L LS N     +         +T I L  N L   +   +   
Sbjct: 181 IYD-VKGQVVFAK-LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236

Query: 126 SKLEVLILSANNLD-GRLPTSLASITTLSRFAANQNK 161
             LE   L  N    G L    +    +   A    K
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  128 bits (325), Expect = 8e-33
 Identities = 66/331 (19%), Positives = 118/331 (35%), Gaps = 46/331 (13%)

Query: 103 NLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKF 162
           +L ++  S   L  +VP  I       +L L  N+           I+ L +       F
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNND-----------ISELRKDD-----F 74

Query: 163 SGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVR 222
            G       + L  L L  NK+  +          LQ + +S N L   +P N+  +LV 
Sbjct: 75  KG------LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVE 127

Query: 223 LRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFT-GMIPQQLGSCRSLTLLNLAQNELNG 281
           LR+  N  I ++P   F+ L  +  +E+  N                L  L +++ +L G
Sbjct: 128 LRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG 186

Query: 282 SLPIQLGSLGILQVMNLQLNKLSGEIPSQ-FSQLKLLSTMNISWNSLSGSIPSFLSNLTN 340
              I       L  ++L  NK+   I  +   +   L  + +  N +       LS L  
Sbjct: 187 ---IPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242

Query: 341 LVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLS---------GTIPMMPPRLQIALN 391
           L  L+L  N L+  +P  + +++ L  + L  N ++             +        ++
Sbjct: 243 LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNG-IS 300

Query: 392 LSSNLFEGPI--PTTFARLNGLEVLDLSNNR 420
           L +N        P TF  +     +   N +
Sbjct: 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  110 bits (277), Expect = 2e-26
 Identities = 65/327 (19%), Positives = 113/327 (34%), Gaps = 36/327 (11%)

Query: 55  SLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKG-IADYRNLTLIDLSANN 113
            L+ +  S       +P  +        L L  N    E+ K      ++L  + L  N 
Sbjct: 34  HLRVVQCSDLGLKA-VPKEISPD--TTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNK 89

Query: 114 LSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGI--- 170
           +S         L KL+ L +S N+L    P   +S+  L     + N+    VP G+   
Sbjct: 90  ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELR---IHDNRIR-KVPKGVFSG 145

Query: 171 TRFLRNLDLSYNKL-LGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNL 229
            R +  +++  N L              L  + +S   L   +P+++   L  L L  N 
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPETLNELHLDHNK 204

Query: 230 LIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGS 289
            I  I         KL  L L +N    +    L    +L  L+L  N+L+  +P  L  
Sbjct: 205 -IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262

Query: 290 LGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQN 349
           L +LQV+ L  N ++    + F  +                   F         ++L  N
Sbjct: 263 LKLLQVVYLHTNNITKVGVNDFCPVG------------------FGVKRAYYNGISLFNN 304

Query: 350 NLNGSI--PNSITNMRSLIELQLGGNQ 374
            +      P +   +   + +Q G  +
Sbjct: 305 PVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  108 bits (273), Expect = 6e-26
 Identities = 62/280 (22%), Positives = 107/280 (38%), Gaps = 17/280 (6%)

Query: 195 HPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNS 254
           H +L+ +  S   L+ ++P+ +SP+   L L  N  I E+    F  L+ L  L L NN 
Sbjct: 32  HCHLRVVQCSDLGLK-AVPKEISPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNK 89

Query: 255 FTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQL 314
            + +  +     R L  L +++N L     I       L  + +  N++       FS L
Sbjct: 90  ISKIHEKAFSPLRKLQKLYISKNHLVE---IPPNLPSSLVELRIHDNRIRKVPKGVFSGL 146

Query: 315 KLLSTMNISWNSL-SGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGN 373
           + ++ + +  N L +        +   L  L + +  L   IP  +    +L EL L  N
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHN 203

Query: 374 QLSGTIPMMP----PRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLL 429
           ++   I +       +L   L L  N        + + L  L  L L NN+ S  +P  L
Sbjct: 204 KIQ-AIELEDLLRYSKLYR-LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260

Query: 430 AQMPTLTQLLLTNNQLSGVVPK-FSKWVSVDTTGNLKLIN 468
             +  L  + L  N ++ V    F              I+
Sbjct: 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 98.6 bits (246), Expect = 2e-22
 Identities = 67/346 (19%), Positives = 115/346 (33%), Gaps = 75/346 (21%)

Query: 9   GLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKF 66
              LL+   N++  L    F G   L  L   +N ++      F  L  L+ L +SKN  
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114

Query: 67  NGFLPINLGKTKALEELVLSGNAFHGEIPKGI-ADYRNLTLIDLSANNL-SGSVPDRIGE 124
              +P NL    +L EL +  N    ++PKG+ +  RN+  I++  N L +        +
Sbjct: 115 VE-IPPNL--PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 125 LSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKL 184
             KL  L +S   L                           +P  +   L  L L +NK 
Sbjct: 171 GLKLNYLRISEAKLT-------------------------GIPKDLPETLNELHLDHNK- 204

Query: 185 LGVIPIDLLSH-PNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLE 243
           +  I ++ L     L  + L  N                        I  I + + + L 
Sbjct: 205 IQAIELEDLLRYSKLYRLGLGHN-----------------------QIRMIENGSLSFLP 241

Query: 244 KLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKL 303
            L  L LDNN  +  +P  L   + L ++ L  N +   + +         V     N +
Sbjct: 242 TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGI 299

Query: 304 SGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQN 349
           S            L    + +  +    P+    +T+ + +     
Sbjct: 300 S------------LFNNPVPYWEVQ---PATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.7 bits (192), Expect = 2e-15
 Identities = 47/257 (18%), Positives = 73/257 (28%), Gaps = 60/257 (23%)

Query: 8   DGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNK 65
             L  L    N +  +P   F+G   +  ++   N               L++       
Sbjct: 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP--------------LENSGFEPGA 168

Query: 66  FNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGEL 125
           F+G           L  L +S       IPK +     L  + L  N +     + +   
Sbjct: 169 FDGL---------KLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQAIELEDLLRY 216

Query: 126 SKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLL 185
           SKL  L L  N            I  +   +      S          LR L L  NK L
Sbjct: 217 SKLYRLGLGHNQ-----------IRMIENGS-----LSF------LPTLRELHLDNNK-L 253

Query: 186 GVIPIDLLSHPNLQTIDLSVNMLE--------GSLPQNMSPNLVRLRLGTNLL-IGEIPS 236
             +P  L     LQ + L  N +                      + L  N +   E+  
Sbjct: 254 SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313

Query: 237 ATFTSLEKLTYLELDNN 253
           ATF  +     ++  N 
Sbjct: 314 ATFRCVTDRLAIQFGNY 330

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  133 bits (335), Expect = 2e-32
 Identities = 78/424 (18%), Positives = 139/424 (32%), Gaps = 69/424 (16%)

Query: 27  NGFAGLEVLDFSSNNLNGNI--NLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELV 84
           N        D   +    ++    +   L + K +    +         L   + +E L 
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 81

Query: 85  LSGNAFHGEIPKGI-ADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLP 143
           L+      EI     A    +  + +  N +    P     +  L VL+L  N+L   LP
Sbjct: 82  LNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 139

Query: 144 TSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSH-PNLQTID 202
             +        F                  L  L +S N  L  I  D      +LQ + 
Sbjct: 140 RGI--------FHNTPK-------------LTTLSMSNNN-LERIEDDTFQATTSLQNLQ 177

Query: 203 LSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQ 262
           LS N L   +  ++ P+L    +  NLL      +T      +  L+  +NS   ++   
Sbjct: 178 LSSNRLT-HVDLSLIPSLFHANVSYNLL------STLAIPIAVEELDASHNSIN-VVRG- 228

Query: 263 LGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNI 322
                 LT+L L  N L       L +   L  ++L  N+L   +   F +++ L  + I
Sbjct: 229 -PVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285

Query: 323 SWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMM 382
           S N L  ++  +   +  L  L+L  N+L   +  +      L  L L  N +  T+   
Sbjct: 286 SNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK-- 340

Query: 383 PPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTN 442
                                  +  + L+ L LS+N +      L A    + +  + +
Sbjct: 341 ----------------------LSTHHTLKNLTLSHNDWDCN--SLRALFRNVARPAVDD 376

Query: 443 NQLS 446
               
Sbjct: 377 ADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  125 bits (314), Expect = 7e-30
 Identities = 63/280 (22%), Positives = 117/280 (41%), Gaps = 21/280 (7%)

Query: 174 LRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNM---SPNLVRLRLGTNLL 230
            + +    + +  +    L S   ++ ++L+   +E  +       +  + +L +G N  
Sbjct: 53  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNA- 110

Query: 231 IGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSL 290
           I  +P   F ++  LT L L+ N  + +      +   LT L+++ N L         + 
Sbjct: 111 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170

Query: 291 GILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNN 350
             LQ + L  N+L+  +    S +  L   N+S+N LS      L+    +  L+   N+
Sbjct: 171 TSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNS 222

Query: 351 LNGSIPNSITNMRSLIELQLGGNQLSGTIPMMP--PRLQIALNLSSNLFEGPIPTTFARL 408
           +N  +   +     L  L+L  N L+     +   P L   ++LS N  E  +   F ++
Sbjct: 223 IN-VVRGPV--NVELTILKLQHNNLT-DTAWLLNYPGLVE-VDLSYNELEKIMYHPFVKM 277

Query: 409 NGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGV 448
             LE L +SNNR    +      +PTL  L L++N L  V
Sbjct: 278 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHV 316

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  120 bits (303), Expect = 2e-28
 Identities = 55/288 (19%), Positives = 107/288 (37%), Gaps = 18/288 (6%)

Query: 174 LRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNM---SPNLVRLRLGTNLL 230
             ++ +           + ++  N + +    + +   LP  +      +  L L     
Sbjct: 29  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQ- 86

Query: 231 IGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQL-GS 289
           I EI +  F     +  L +  N+   + P    +   LT+L L +N+L+ SLP  +  +
Sbjct: 87  IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHN 145

Query: 290 LGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQN 349
              L  +++  N L       F     L  + +S N L+  +   LS + +L + N+  N
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYN 202

Query: 350 NLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLN 409
            L     +++    ++ EL    N ++     +   L I L L  N              
Sbjct: 203 LL-----STLAIPIAVEELDASHNSINVVRGPVNVELTI-LKLQHNNLTD--TAWLLNYP 254

Query: 410 GLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVS 457
           GL  +DLS N     +     +M  L +L ++NN+L  +        +
Sbjct: 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT 302

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 87.3 bits (216), Expect = 6e-18
 Identities = 73/452 (16%), Positives = 138/452 (30%), Gaps = 59/452 (13%)

Query: 5   GGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKN 64
             I  L   N S N L +L        +E LD S N++N    ++    V L  L L  N
Sbjct: 189 SLIPSLFHANVSYNLLSTLA---IPIAVEELDASHNSIN---VVRGPVNVELTILKLQHN 242

Query: 65  KFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGE 124
                                       +    + +Y  L  +DLS N L   +     +
Sbjct: 243 NLT-------------------------DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVK 276

Query: 125 LSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKL 184
           + +LE L +S N            +  L+ +                  L+ LDLS+N L
Sbjct: 277 MQRLERLYISNNR-----------LVALNLYGQPIPT------------LKVLDLSHNHL 313

Query: 185 LGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEK 244
           L  +  +      L+ + L  N +  +L  +    L  L L  N        A F ++ +
Sbjct: 314 L-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVAR 371

Query: 245 LTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLS 304
               + D +       +    C+      L +     +L   +  +   Q      + ++
Sbjct: 372 PAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTIN 431

Query: 305 GEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSI-TNMR 363
                     +           L   +    + +  L N  ++Q  L   +   I TN+R
Sbjct: 432 SVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLR 491

Query: 364 SLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSG 423
                + G  + S  +  +   L+          +       A+    E L+  N     
Sbjct: 492 RYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEK 551

Query: 424 EIPQL-LAQMPTLTQLLLTNNQLSGVVPKFSK 454
           ++      Q     +  L   ++  +  K ++
Sbjct: 552 QLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 39/298 (13%), Positives = 84/298 (28%), Gaps = 18/298 (6%)

Query: 5   GGIDGLKLLNFSKNELVSLP-TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSK 63
             I  LK+L+ S N L+ +      F  LE L    N++     L+     +LK+L LS 
Sbjct: 298 QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSH 354

Query: 64  NKFNG----FLPINLGKTKALE-------ELVLSGNAFHGEIPKGIADYRNLTLIDLSAN 112
           N ++      L  N+ +    +       +  L       E  K   D     +   S  
Sbjct: 355 NDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVV 414

Query: 113 NLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITR 172
                   R      +  +   ++ +  +    L     L             +     +
Sbjct: 415 EKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQ 474

Query: 173 FLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLL-- 230
             + L   + ++   +    L    L     ++N +   L +  +  L   +        
Sbjct: 475 QEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADA 534

Query: 231 -IGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQL 287
              E       ++     L+        +  +     + +  L   +N    +  +  
Sbjct: 535 KQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRVSH 592

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  129 bits (327), Expect = 1e-31
 Identities = 90/470 (19%), Positives = 165/470 (35%), Gaps = 41/470 (8%)

Query: 8   DGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFN 67
           +   ++++S   L  +P  +     + L  S N+++         L  L+ L LS N+  
Sbjct: 31  ELESMVDYSNRNLTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR 89

Query: 68  GFLPINL-GKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPD--RIGE 124
             L  ++    + LE L +S N     I        +L  +DLS N+    +P     G 
Sbjct: 90  -SLDFHVFLFNQDLEYLDVSHNRLQ-NISCCPMA--SLRHLDLSFNDFD-VLPVCKEFGN 144

Query: 125 LSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVP----GGITRFLRNLDLS 180
           L+KL  L LSA          +A +          +                 + +L   
Sbjct: 145 LTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204

Query: 181 YNKLLGVIPIDLLSH-PNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSA-- 237
            N L  V     ++   +LQ  ++ +N             L R     N+ +  I +   
Sbjct: 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264

Query: 238 ------TFTSLEKLTYLELDNNSFTGMIPQQLG-----SCRSLTLLNLAQNELNGSLPIQ 286
                  F     + YL + N + T  I ++       + +SL + ++       S    
Sbjct: 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEAL 324

Query: 287 LGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNL 346
                 + +  L ++                + +N + N  + S+    S L  L  L L
Sbjct: 325 YSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384

Query: 347 RQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMM-------PPRLQIALNLSSNLFEG 399
           ++N L  +        +++  L+     L+                + + LNLSSN+   
Sbjct: 385 QRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV-LNLSSNMLT- 441

Query: 400 PIPTTFARLNG-LEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGV 448
              + F  L   ++VLDL NNR    IP+ +  +  L +L + +NQL  V
Sbjct: 442 --GSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSV 488

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  119 bits (300), Expect = 3e-28
 Identities = 90/439 (20%), Positives = 165/439 (37%), Gaps = 34/439 (7%)

Query: 10  LKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFN 67
           L++L  S N + SL    F     LE LD S N L    N+    + SL+ L+LS N F+
Sbjct: 78  LRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ---NISCCPMASLRHLDLSFNDFD 134

Query: 68  GFLPIN--LGKTKALEELVLSGNAFHGEIPKGIAD-YRNLTLIDLSANNLSGSVPDRIGE 124
             LP+    G    L  L LS   F       +A  + +  L+DL + ++ G   + +  
Sbjct: 135 V-LPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQI 193

Query: 125 LSKLEVLILSANN-------LDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRF-LRN 176
            +   + ++   N                  ++ +     N  +    +        L N
Sbjct: 194 PNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN 253

Query: 177 LDLSYNKLLGVIPIDLLS---HPNLQTIDLSVNMLEGSLP------QNMSPNLVRLRLGT 227
           + L + +      + L        ++ +++    +   +          +   + +    
Sbjct: 254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK 313

Query: 228 NLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQL 287
           N +      A ++   ++    L  +    +      S  S T LN  QN    S+    
Sbjct: 314 NQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGC 373

Query: 288 GSLGILQVMNLQLNKLS--GEIPSQFSQLKLLSTMNISWNSL-SGSIPSFLSNLTNLVNL 344
            +L  LQ + LQ N L    ++      +  L T+++S NSL S +     +   +++ L
Sbjct: 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433

Query: 345 NLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQ--IALNLSSNLFEGPIP 402
           NL  N L GS+   +     +  L L  N++  +IP     LQ    LN++SN  +    
Sbjct: 434 NLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPD 490

Query: 403 TTFARLNGLEVLDLSNNRF 421
             F RL  L+ + L +N +
Sbjct: 491 GVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 88.0 bits (218), Expect = 3e-18
 Identities = 63/376 (16%), Positives = 133/376 (35%), Gaps = 33/376 (8%)

Query: 103 NLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKF 162
             +++D S  NL+  VP  +    + + L LS N++       ++ ++ L     + N+ 
Sbjct: 32  LESMVDYSNRNLT-HVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI 88

Query: 163 SGSVPGGITRFLRN---LDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS-- 217
             S+   +  F ++   LD+S+N+L   I    ++  +L+ +DLS N  +  LP      
Sbjct: 89  R-SLDFHVFLFNQDLEYLDVSHNRL-QNISCCPMA--SLRHLDLSFNDFD-VLPVCKEFG 143

Query: 218 --PNLVRLRLGTNLLIGEIPSATFTSLEKLT-YLELDNNSFTGMIPQQLGSCRSLTLLNL 274
               L  L L       ++       L      L+L +    G   + L    +  L  +
Sbjct: 144 NLTKLTFLGLSAAKF-RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLV 202

Query: 275 AQNELNGSLPIQLG--SLGILQVMNLQLNKLSGEIPSQFSQ--LKLLSTMNISWNSLSGS 330
                  S+ + +   +LG LQ+ N++LN  + +    F     +  + +N++   +  +
Sbjct: 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262

Query: 331 IPSFLSNL-----TNLVNLNLRQNNLNGSIPNSI-----TNMRSLIELQLGGNQLSGTIP 380
               +          +  LN+    +   I         T ++SL+   +       +  
Sbjct: 263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKE 322

Query: 381 MMPPRL--QIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQL 438
            +           LS +             +    L+ + N F+  + Q  + +  L  L
Sbjct: 323 ALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTL 382

Query: 439 LLTNNQLSGVVPKFSK 454
           +L  N L         
Sbjct: 383 ILQRNGLKNFFKVALM 398

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 10/144 (6%)

Query: 2   QSCGGIDGLKLLNFSKNELVSLP-TFNGFAGLEVLDFSSNNLNGNINLQFDELV----SL 56
           Q C  +  L+ L   +N L +          +  L+    +LN   +  +D       S+
Sbjct: 371 QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430

Query: 57  KSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSG 116
             LNLS N   G +   L     ++ L L  N     IPK +   + L  +++++N L  
Sbjct: 431 LVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK- 486

Query: 117 SVPDRI-GELSKLEVLILSANNLD 139
           SVPD +   L+ L+ + L  N  D
Sbjct: 487 SVPDGVFDRLTSLQYIWLHDNPWD 510

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  126 bits (317), Expect = 6e-31
 Identities = 61/284 (21%), Positives = 94/284 (33%), Gaps = 52/284 (18%)

Query: 165 SVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNM---SPNLV 221
            VP GI    R L+L  N +  +         +L+ + L  N +   +         +L 
Sbjct: 68  EVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLN 126

Query: 222 RLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNG 281
            L L  N  +  IPS  F  L KL  L L NN    +         SL  L+L +     
Sbjct: 127 TLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL---- 181

Query: 282 SLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNL 341
                               KL       F  L  L  +N+   ++   +P+  + L  L
Sbjct: 182 -------------------KKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNL-TPLVGL 220

Query: 342 VNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPI 401
             L +  N+     P S   + SL +L +  +Q+S  I                      
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIE--------------------- 258

Query: 402 PTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQL 445
              F  L  L  L+L++N  S     L   +  L +L L +N  
Sbjct: 259 RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  113 bits (284), Expect = 1e-26
 Identities = 59/255 (23%), Positives = 94/255 (36%), Gaps = 33/255 (12%)

Query: 196 PNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSF 255
                +  +   L   +PQ +  N   L L  N  I  I + TF  L  L  L+L  NS 
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIPSNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 256 TGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLK 315
             +         SL  L L  N L   +P                          F  L 
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLT-VIP-----------------------SGAFEYLS 147

Query: 316 LLSTMNISWNSLSGSIPSF-LSNLTNLVNLNLRQNNLNGSIPNSI-TNMRSLIELQLGGN 373
            L  + +  N +  SIPS+  + + +L+ L+L +      I       + +L  L LG  
Sbjct: 148 KLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206

Query: 374 QLSGTIPMMP--PRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQ 431
            +   +P +     L+  L +S N F    P +F  L+ L+ L + N++ S         
Sbjct: 207 NIK-DMPNLTPLVGLEE-LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264

Query: 432 MPTLTQLLLTNNQLS 446
           + +L +L L +N LS
Sbjct: 265 LASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  102 bits (257), Expect = 3e-23
 Identities = 67/264 (25%), Positives = 100/264 (37%), Gaps = 32/264 (12%)

Query: 93  EIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTL 152
           E+P+GI    N   ++L  NN+     D    L  LEVL L  N+           I  +
Sbjct: 68  EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-----------IRQI 114

Query: 153 SRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSH-PNLQTIDLSVN---ML 208
              A     F+G         L  L+L  N L  VIP     +   L+ + L  N    +
Sbjct: 115 EVGA-----FNG------LASLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNNPIESI 162

Query: 209 EGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRS 268
                  + P+L+RL LG    +  I    F  L  L YL L   +   M    L     
Sbjct: 163 PSYAFNRV-PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVG 219

Query: 269 LTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLS 328
           L  L ++ N      P     L  L+ + +  +++S    + F  L  L  +N++ N+LS
Sbjct: 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

Query: 329 GSIPSFLSNLTNLVNLNLRQNNLN 352
                  + L  LV L+L  N  N
Sbjct: 280 SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 97.9 bits (244), Expect = 1e-21
 Identities = 52/267 (19%), Positives = 87/267 (32%), Gaps = 33/267 (12%)

Query: 16  SKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLG 75
           ++  L  +P     +    L+   NN+       F  L  L+ L L +N           
Sbjct: 62  TRRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN 120

Query: 76  KTKALEELVLSGNAFHGEIPKGI-ADYRNLTLIDLSANNLSGSVPDRI-GELSKLEVLIL 133
              +L  L L  N     IP G       L  + L  N +  S+P      +  L  L L
Sbjct: 121 GLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDL 178

Query: 134 SANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLL 193
                          +  +S  A     F G         L+ L+L    +   +P +L 
Sbjct: 179 GELK----------KLEYISEGA-----FEG------LFNLKYLNLGMCNIK-DMP-NLT 215

Query: 194 SHPNLQTIDLSVNMLEGSLPQNM---SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLEL 250
               L+ +++S N     +         +L +L +  +  +  I    F  L  L  L L
Sbjct: 216 PLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNL 273

Query: 251 DNNSFTGMIPQQLGSCRSLTLLNLAQN 277
            +N+ + +        R L  L+L  N
Sbjct: 274 AHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.4 bits (183), Expect = 4e-14
 Identities = 43/207 (20%), Positives = 75/207 (36%), Gaps = 29/207 (14%)

Query: 6   GIDGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSK 63
           G+  L  L    N L  +P   F   + L  L   +N +    +  F+ + SL  L+L +
Sbjct: 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180

Query: 64  NKFNGFLPIN-LGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRI 122
            K   ++          L+ L L       ++P  +     L  +++S N+     P   
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSF 238

Query: 123 GELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYN 182
             LS L+ L +  +            ++ + R A     F G         L  L+L++N
Sbjct: 239 HGLSSLKKLWVMNSQ-----------VSLIERNA-----FDG------LASLVELNLAHN 276

Query: 183 KLLGVIPIDLLSH-PNLQTIDLSVNML 208
             L  +P DL +    L  + L  N  
Sbjct: 277 N-LSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.1 bits (177), Expect = 3e-13
 Identities = 31/163 (19%), Positives = 49/163 (30%), Gaps = 24/163 (14%)

Query: 293 LQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLN 352
            + +NL  N +       F  L  L  + +  NS+        + L +L  L L  N L 
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136

Query: 353 GSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLE 412
                +   +  L EL L  N +  +IP                        F R+  L 
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIE-SIP---------------------SYAFNRVPSLM 174

Query: 413 VLDLSN-NRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSK 454
            LDL    +           +  L  L L    +   +P  + 
Sbjct: 175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTP 216

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 6/125 (4%)

Query: 18  NELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLG 75
            +L  +    F G   L+ L+    N+  ++      LV L+ L +S N F    P +  
Sbjct: 182 KKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFH 239

Query: 76  KTKALEELVLSGNAFHGEIPKG-IADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILS 134
              +L++L +  +     I +       +L  ++L+ NNLS    D    L  L  L L 
Sbjct: 240 GLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298

Query: 135 ANNLD 139
            N  +
Sbjct: 299 HNPWN 303

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  124 bits (312), Expect = 2e-30
 Identities = 62/285 (21%), Positives = 102/285 (35%), Gaps = 54/285 (18%)

Query: 165 SVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNM---SPNLV 221
            VP GI+   R L+L  N++  +         +L+ + LS N +  ++         NL 
Sbjct: 57  EVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLN 115

Query: 222 RLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNG 281
            L L  N  +  IP+  F  L KL  L L NN    +         SL  L+L +     
Sbjct: 116 TLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL---- 170

Query: 282 SLPIQLGSLGILQVMNLQLNKLSGEIPSQ-FSQLKLLSTMNISWNSLSGSIPSFLSNLTN 340
                               +LS  I    F  L  L  +N++  +L   IP+  + L  
Sbjct: 171 -------------------KRLS-YISEGAFEGLSNLRYLNLAMCNLR-EIPNL-TPLIK 208

Query: 341 LVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGP 400
           L  L+L  N+L+   P S   +  L +L +  +Q+   I                     
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIE-------------------- 247

Query: 401 IPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQL 445
               F  L  L  ++L++N  +     L   +  L ++ L +N  
Sbjct: 248 -RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  112 bits (281), Expect = 2e-26
 Identities = 53/255 (20%), Positives = 88/255 (34%), Gaps = 33/255 (12%)

Query: 196 PNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSF 255
                +      L   +P  +S N   L L  N  I  I   +F  L  L  L+L  N  
Sbjct: 43  NQFSKVICVRKNLR-EVPDGISTNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 256 TGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLK 315
             +         +L  L L  N L  ++P                          F  L 
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLT-TIP-----------------------NGAFVYLS 136

Query: 316 LLSTMNISWNSLSGSIPSFL-SNLTNLVNLNLRQNNLNGSIP-NSITNMRSLIELQLGGN 373
            L  + +  N +  SIPS+  + + +L  L+L +      I   +   + +L  L L   
Sbjct: 137 KLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195

Query: 374 QLSGTIPMMP--PRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQ 431
            L   IP +    +L   L+LS N      P +F  L  L+ L +  ++           
Sbjct: 196 NLR-EIPNLTPLIKLD-ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253

Query: 432 MPTLTQLLLTNNQLS 446
           + +L ++ L +N L+
Sbjct: 254 LQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  101 bits (254), Expect = 6e-23
 Identities = 64/264 (24%), Positives = 104/264 (39%), Gaps = 32/264 (12%)

Query: 93  EIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTL 152
           E+P GI+   N  L++L  N +     +    L  LE+L LS N+           I T+
Sbjct: 57  EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-----------IRTI 103

Query: 153 SRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSH-PNLQTIDLSVN---ML 208
              A     F+G         L  L+L  N+L   IP     +   L+ + L  N    +
Sbjct: 104 EIGA-----FNG------LANLNTLELFDNRL-TTIPNGAFVYLSKLKELWLRNNPIESI 151

Query: 209 EGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRS 268
                  + P+L RL LG    +  I    F  L  L YL L   +   +    L     
Sbjct: 152 PSYAFNRI-PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIK 208

Query: 269 LTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLS 328
           L  L+L+ N L+   P     L  LQ + +  +++     + F  L+ L  +N++ N+L+
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

Query: 329 GSIPSFLSNLTNLVNLNLRQNNLN 352
                  + L +L  ++L  N  N
Sbjct: 269 LLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 97.9 bits (244), Expect = 1e-21
 Identities = 57/267 (21%), Positives = 89/267 (33%), Gaps = 33/267 (12%)

Query: 16  SKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLG 75
            +  L  +P         +L+   N +       F  L  L+ L LS+N           
Sbjct: 51  VRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN 109

Query: 76  KTKALEELVLSGNAFHGEIPKGI-ADYRNLTLIDLSANNLSGSVPDRI-GELSKLEVLIL 133
               L  L L  N     IP G       L  + L  N +  S+P      +  L  L L
Sbjct: 110 GLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDL 167

Query: 134 SANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLL 193
                          ++ +S  A     F G         LR L+L+   L   IP +L 
Sbjct: 168 GELK----------RLSYISEGA-----FEG------LSNLRYLNLAMCNLR-EIP-NLT 204

Query: 194 SHPNLQTIDLSVNMLEGSLPQNM---SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLEL 250
               L  +DLS N L  ++         +L +L +  +  I  I    F +L+ L  + L
Sbjct: 205 PLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINL 262

Query: 251 DNNSFTGMIPQQLGSCRSLTLLNLAQN 277
            +N+ T +          L  ++L  N
Sbjct: 263 AHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.8 bits (184), Expect = 3e-14
 Identities = 49/208 (23%), Positives = 82/208 (39%), Gaps = 31/208 (14%)

Query: 6   GIDGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQ-FDELVSLKSLNLS 62
           G+  L  L    N L ++P   F   + L+ L   +N +  +I    F+ + SL+ L+L 
Sbjct: 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLG 168

Query: 63  KNKFNGFLPIN-LGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDR 121
           + K   ++          L  L L+      EIP  +     L  +DLS N+LS   P  
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGS 226

Query: 122 IGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSY 181
              L  L+ L +  +            I  + R A     F         + L  ++L++
Sbjct: 227 FQGLMHLQKLWMIQSQ-----------IQVIERNA-----FDN------LQSLVEINLAH 264

Query: 182 NKLLGVIPIDLLSH-PNLQTIDLSVNML 208
           N  L ++P DL +   +L+ I L  N  
Sbjct: 265 NN-LTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.0 bits (143), Expect = 3e-09
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 7/134 (5%)

Query: 10  LKLLNFSK-NELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKF 66
           L+ L+  +   L  +    F G + L  L+ +  NL   I      L+ L  L+LS N  
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHL 219

Query: 67  NGFLPINLGKTKALEELVLSGNAFHGEIPKG-IADYRNLTLIDLSANNLSGSVPDRIGEL 125
           +   P +      L++L +  +     I +    + ++L  I+L+ NNL+    D    L
Sbjct: 220 SAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278

Query: 126 SKLEVLILSANNLD 139
             LE + L  N  +
Sbjct: 279 HHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 363 RSLIELQLGGNQLSGTIPM-MPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRF 421
               ++      L   +P  +    ++ LNL  N  +     +F  L  LE+L LS N  
Sbjct: 43  NQFSKVICVRKNLR-EVPDGISTNTRL-LNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 422 SGEIPQLLAQMPTLTQLLLTNNQLSGV 448
                     +  L  L L +N+L+ +
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTI 127

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  124 bits (313), Expect = 2e-30
 Identities = 71/440 (16%), Positives = 144/440 (32%), Gaps = 62/440 (14%)

Query: 32  LEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFH 91
                 ++  +     +  ++L +L SL+   +       I   K   L +L+ + N   
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGI--EKLTGLTKLICTSNNI- 76

Query: 92  GEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITT 151
             +   ++   NLT +   +N L+ ++   +  L+KL  L    N L     +    +T 
Sbjct: 77  TTLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTY 131

Query: 152 LSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGS 211
           L+     +N  +  +       L  LD   NK +  + +       L T+D S N +   
Sbjct: 132 LN---CARNTLT-EIDVSHNTQLTELDCHLNKKITKLDVTPQ--TQLTTLDCSFNKIT-E 184

Query: 212 LPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTL 271
           L  + +  L RL   TN     I         +LT+L+  +N  T  I   +     LT 
Sbjct: 185 LDVSQNKLLNRLNCDTN----NITKLDLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTY 237

Query: 272 LNLAQNELNGSLPI-QLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGS 330
            + + N L   L +  L  L  L  +   L ++        +    L             
Sbjct: 238 FDCSVNPLT-ELDVSTLSKLTTLHCIQTDLLEID------LTHNTQLIYFQAEGCRKIKE 290

Query: 331 IPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIAL 390
           +   +++ T L  L+ +   +   +   ++    L+ L L   +L+  +           
Sbjct: 291 LD--VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD---------- 334

Query: 391 NLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVP 450
                          +    L+ L   N     +    + ++P L        Q   +  
Sbjct: 335 --------------VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITMPK 378

Query: 451 KFSKWVSVDTTGNLKLINVT 470
           +     S+    +  L++  
Sbjct: 379 ETLTNNSLTIAVSPDLLDQF 398

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  121 bits (306), Expect = 2e-29
 Identities = 67/416 (16%), Positives = 140/416 (33%), Gaps = 36/416 (8%)

Query: 7   IDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKF 66
           +  L  L+   + +  +       GL  L  +SNN+     L   +  +L  L    NK 
Sbjct: 41  LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNIT---TLDLSQNTNLTYLACDSNKL 97

Query: 67  NGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELS 126
                +++     L  L    N    ++   ++    LT ++ + N L+  +   +   +
Sbjct: 98  TN---LDVTPLTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNTLT-EID--VSHNT 148

Query: 127 KLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLG 186
           +L  L    N    +L   +   T L+    + NK +  +     + L  L+   N +  
Sbjct: 149 QLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT-ELDVSQNKLLNRLNCDTNNITK 205

Query: 187 VIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLT 246
              +DL  +  L  +D S N L   +       L       N L  E+  +T +   KLT
Sbjct: 206 ---LDLNQNIQLTFLDCSSNKLT-EIDVTPLTQLTYFDCSVNPLT-ELDVSTLS---KLT 257

Query: 247 YLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGE 306
            L             ++    +  L+            + +     L +++ Q   ++ E
Sbjct: 258 TLHCIQTDLL-----EIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-E 311

Query: 307 IPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLI 366
           +    SQ   L  + ++   L+  +   +S+ T L +L+    ++      S+  + +L 
Sbjct: 312 LD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALN 364

Query: 367 ELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFS 422
                  Q             + + +S +L +              V D + N  +
Sbjct: 365 NNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTIT 420

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  109 bits (274), Expect = 2e-25
 Identities = 63/344 (18%), Positives = 120/344 (34%), Gaps = 31/344 (9%)

Query: 103 NLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKF 162
           N      +A  +  +      +L+ L  L    +++     T +  +T L++     N  
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNI 76

Query: 163 SGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVR 222
           + ++       L  L    NKL     +D+     L  ++   N L   L  + +P L  
Sbjct: 77  T-TLDLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLT-KLDVSQNPLLTY 131

Query: 223 LRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGS 282
           L    N     +     +   +LT L+   N     +   +     LT L+ + N++   
Sbjct: 132 LNCARN----TLTEIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE- 184

Query: 283 LPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLV 342
             + +    +L  +N   N ++ ++    +Q   L+ ++ S N L+  I   ++ LT L 
Sbjct: 185 --LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLT 236

Query: 343 NLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIP 402
             +   N L   +  S   +  L  L      L   I +      I            + 
Sbjct: 237 YFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLL-EIDLTHNTQLIYFQAEGCRKIKELD 292

Query: 403 TTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLS 446
                   L +LD      + E+   L+Q P L  L L N +L+
Sbjct: 293 --VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT 331

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  120 bits (303), Expect = 4e-30
 Identities = 69/260 (26%), Positives = 110/260 (42%), Gaps = 16/260 (6%)

Query: 197 NLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNN--S 254
           +   I  +   L  S+P  +  +  RL L +N  +  +P   F  L +LT L L +N  S
Sbjct: 8   SGTEIRCNSKGLT-SVPTGIPSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 255 FTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQ--FS 312
           F G   Q      SL  L+L+ N +  ++      L  L+ ++ Q + L  ++     F 
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFL 123

Query: 313 QLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSI-PNSITNMRSLIELQLG 371
            L+ L  ++IS      +     + L++L  L +  N+   +  P+  T +R+L  L L 
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 372 GNQLSGTIPMMP----PRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQ 427
             QL   +          LQ+ LN+S N F       +  LN L+VLD S N       Q
Sbjct: 184 QCQLE-QLSPTAFNSLSSLQV-LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241

Query: 428 LLAQMPT-LTQLLLTNNQLS 446
            L   P+ L  L LT N  +
Sbjct: 242 ELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  104 bits (261), Expect = 1e-24
 Identities = 60/272 (22%), Positives = 90/272 (33%), Gaps = 38/272 (13%)

Query: 16  SKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLG 75
           +   L S+PT    +    L+  SN L    +  FD+L  L  L+LS N  + F      
Sbjct: 15  NSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQ 72

Query: 76  ---KTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRI-GELSKLEVL 131
               T +L+ L LS N     +         L  +D   +NL       +   L  L  L
Sbjct: 73  SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 131

Query: 132 ILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPID 191
            +S  +                        F+G         L  L ++ N        D
Sbjct: 132 DISHTH-----------TRVAFNGI-----FNG------LSSLEVLKMAGNSFQENFLPD 169

Query: 192 LLSH-PNLQTIDLSVNMLEGSLPQNMSPNLVRLR---LGTNLLIGEIPSATFTSLEKLTY 247
           + +   NL  +DLS   LE  L      +L  L+   +  N     + +  +  L  L  
Sbjct: 170 IFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQV 227

Query: 248 LELDNNSFTGMIPQQL--GSCRSLTLLNLAQN 277
           L+   N       +Q       SL  LNL QN
Sbjct: 228 LDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  103 bits (258), Expect = 3e-24
 Identities = 60/281 (21%), Positives = 97/281 (34%), Gaps = 34/281 (12%)

Query: 103 NLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKF 162
           + T I  ++  L+ SVP  I   S    L L +N            + +L         F
Sbjct: 8   SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNK-----------LQSLPHGV-----F 48

Query: 163 SGSVPGGITRFLRNLDLSYNKL--LGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS--P 218
                      L  L LS N L   G          +L+ +DLS N +  ++  N     
Sbjct: 49  DK------LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLE 101

Query: 219 NLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNE 278
            L  L    + L      + F SL  L YL++ +               SL +L +A N 
Sbjct: 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161

Query: 279 LNGSLPIQ-LGSLGILQVMNLQLNKLSGEIPSQ-FSQLKLLSTMNISWNSLSGSIPSFLS 336
              +        L  L  ++L   +L  ++    F+ L  L  +N+S N+          
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220

Query: 337 NLTNLVNLNLRQNNLNGSIPNSITNM-RSLIELQLGGNQLS 376
            L +L  L+   N++  S    + +   SL  L L  N  +
Sbjct: 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.3 bits (209), Expect = 7e-18
 Identities = 38/163 (23%), Positives = 64/163 (39%), Gaps = 9/163 (5%)

Query: 293 LQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLS-GSIPSF-LSNLTNLVNLNLRQNN 350
              + L+ NKL       F +L  L+ +++S N LS     S      T+L  L+L  N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 351 LNGSIPNSITNMRSLIELQLGGNQLSGTIPMMP----PRLQIALNLSSNLFEGPIPTTFA 406
           +  ++ ++   +  L  L    + L              L   L++S           F 
Sbjct: 90  VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY-LDISHTHTRVAFNGIFN 147

Query: 407 RLNGLEVLDLSNNRFSGEI-PQLLAQMPTLTQLLLTNNQLSGV 448
            L+ LEVL ++ N F     P +  ++  LT L L+  QL  +
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 69.7 bits (171), Expect = 5e-13
 Identities = 35/152 (23%), Positives = 60/152 (39%), Gaps = 13/152 (8%)

Query: 10  LKLLNFSKNELVSLP---TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKF 66
           L+ L+F  + L  +     F     L  LD S  +     N  F+ L SL+ L ++ N F
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162

Query: 67  NGFLPIN-LGKTKALEELVLSGNAFHGEIPKGI-ADYRNLTLIDLSANNLSGSVPDRIGE 124
                 +   + + L  L LS      ++         +L ++++S NN           
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221

Query: 125 LSKLEVLILSANNLD-------GRLPTSLASI 149
           L+ L+VL  S N++           P+SLA +
Sbjct: 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 31/135 (22%), Positives = 46/135 (34%), Gaps = 30/135 (22%)

Query: 10  LKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNI---------NLQ--------- 49
           L  L+ S           FNG + LEVL  + N+   N          NL          
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

Query: 50  -------FDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIAD-- 100
                  F+ L SL+ LN+S N F            +L+ L  S N       K      
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHF 246

Query: 101 YRNLTLIDLSANNLS 115
             +L  ++L+ N+ +
Sbjct: 247 PSSLAFLNLTQNDFA 261

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  122 bits (309), Expect = 8e-30
 Identities = 89/444 (20%), Positives = 160/444 (36%), Gaps = 70/444 (15%)

Query: 3   SCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLS 62
           S  G             L  +P     A +  +D S N++       F  L  L+ L + 
Sbjct: 9   SVIG----YNAICINRGLHQVPEL--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVE 62

Query: 63  KNKFNGFLPINL-GKTKALEELVLSGNAFHGEIPKGI-ADYRNLTLIDLSANNL-SGSVP 119
           +      +  N      +L  L L  N F  ++  G      NL ++ L+  NL    + 
Sbjct: 63  QQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLS 121

Query: 120 DRI-GELSKLEVLILSANNL----DGRLPTSLASITTLSRFAANQNKFSGSVPGGI---- 170
                 L+ LE+L+L  NN+          ++     L       NK   S+        
Sbjct: 122 GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD---LTFNKVK-SICEEDLLNF 177

Query: 171 -TRFLRNLDLSYNKLLGVIPIDLLSHP--------NLQTIDLSVNMLEGSLPQNMSPNLV 221
             +    L LS   L  +    L            ++ T+DLS N  + S+ +     + 
Sbjct: 178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA 237

Query: 222 RLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNG 281
             ++ +  LI        +S     + + DN +F G+          +   +L+++++  
Sbjct: 238 GTKIQS--LILSNSYNMGSSFGHTNFKDPDNFTFKGL------EASGVKTCDLSKSKIF- 288

Query: 282 SLPIQL-GSLGILQVMNLQLNKLSGEIPSQ-FSQLKLLSTMNISWNSLSGSIPSFL-SNL 338
           +L   +      L+ + L  N+++ +I    F  L  L  +N+S N L  SI S +  NL
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENL 346

Query: 339 TNLVNLNLRQNNLNGSIPNSI-TNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLF 397
             L  L+L  N++  ++ +     + +L EL L  NQL  ++P                 
Sbjct: 347 DKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLK-SVP----------------- 387

Query: 398 EGPIPTTFARLNGLEVLDLSNNRF 421
                  F RL  L+ + L  N +
Sbjct: 388 ----DGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  119 bits (301), Expect = 8e-29
 Identities = 77/378 (20%), Positives = 129/378 (34%), Gaps = 42/378 (11%)

Query: 13  LNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQ-FDELVSLKSLNLSKNKFNGF 69
           ++ S N +  L   +F+    L+ L          I    F  L SL  L L  N+F   
Sbjct: 35  VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94

Query: 70  LPINLGKTKALEELVLSGNAFHG-EIPKGIADY-RNLTLIDLSANNLSGSVPDRI-GELS 126
                     LE L L+     G  +         +L ++ L  NN+    P      + 
Sbjct: 95  ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154

Query: 127 KLEVLILSANNLDGRLPTSLASITTLS----RFAANQ------NKFSGSVPGGITRF--L 174
           +  VL L+ N +       L +         R ++                G   +   +
Sbjct: 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSI 214

Query: 175 RNLDLSYNKLLGVIP---IDLLSHPNLQTIDLSVNMLEG-SLPQN-------------MS 217
             LDLS N     +     D ++   +Q++ LS +   G S                  +
Sbjct: 215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274

Query: 218 PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQN 277
             +    L  +  I  +  + F+    L  L L  N    +          L  LNL+QN
Sbjct: 275 SGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333

Query: 278 ELNGSLPIQL-GSLGILQVMNLQLNKLSGEIPSQ-FSQLKLLSTMNISWNSLSGSIPS-F 334
            L GS+  ++  +L  L+V++L  N +   +  Q F  L  L  + +  N L  S+P   
Sbjct: 334 FL-GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGI 390

Query: 335 LSNLTNLVNLNLRQNNLN 352
              LT+L  + L  N  +
Sbjct: 391 FDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  117 bits (296), Expect = 3e-28
 Identities = 75/414 (18%), Positives = 137/414 (33%), Gaps = 58/414 (14%)

Query: 54  VSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADY-RNLTLIDLSAN 112
             +  ++LS N        +  + + L+ L +        I         +L ++ L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 113 NLSGSVPDRI-GELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGIT 171
                +       L+ LEVL L+  NLD                          + G   
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLD-----------------------GAVLSGNFF 125

Query: 172 RFLRNL---DLSYNKLLGVIPIDLLSH-PNLQTIDLSVNML----EGSLPQNMSPNLVRL 223
           + L +L    L  N +  + P     +      +DL+ N +    E  L      +   L
Sbjct: 126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185

Query: 224 RLGTNLL-------IGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQ 276
           RL +  L       +G            +T L+L  N F   + ++     ++    +  
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF--FDAIAGTKIQS 243

Query: 277 NELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPS-FL 335
             L+ +      S G     +       G   S      L      S + +  ++     
Sbjct: 244 LILS-NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL------SKSKIF-ALLKSVF 295

Query: 336 SNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMP----PRLQIALN 391
           S+ T+L  L L QN +N    N+   +  L++L L  N L  +I         +L++ L+
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEV-LD 353

Query: 392 LSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQL 445
           LS N        +F  L  L+ L L  N+       +  ++ +L ++ L  N  
Sbjct: 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  103 bits (258), Expect = 2e-23
 Identities = 55/285 (19%), Positives = 104/285 (36%), Gaps = 36/285 (12%)

Query: 196 PNLQTIDLSVNMLEGSLPQNM---SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDN 252
            ++  +DLS+N +   L +       +L  L++        I + TF  L  L  L+LD 
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 253 NSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGS---LGILQVMNLQLNKLSGEIP- 308
           N F  +         +L +L L Q  L+    +       L  L+++ L+ N +    P 
Sbjct: 89  NQFLQLETGAFNGLANLEVLTLTQCNLD-GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

Query: 309 SQFSQLKLLSTMNISWNSLSGSIPSFLSNLT--NLVNLNLRQNNLNGSIPNSIT------ 360
           S F  ++    +++++N +       L N    +   L L    L       +       
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207

Query: 361 --NMRSLIELQLGGNQLSGTIP---------MMPPRLQIALN------LSSNLFEGPIPT 403
                S+  L L GN    ++               L ++ +           F+ P   
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267

Query: 404 TFARL--NGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLS 446
           TF  L  +G++  DLS ++    +  + +    L QL L  N+++
Sbjct: 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score =  113 bits (285), Expect = 4e-28
 Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 7/181 (3%)

Query: 584 IKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLF 643
           +K            +     +E ++   L + N++      L   +  L  E+A  G L 
Sbjct: 35  VKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLN 94

Query: 644 DVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGD 703
            VL G     +      + AV +A+G+ +LH     PI+  DL + NI +    E     
Sbjct: 95  RVLSG---KRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLS 151

Query: 704 IELCKVID----PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
            ++ K+ D          +  + AG+  ++ PE       +   +V+S+GV+L ELLTG+
Sbjct: 152 NKILKITDFGLAREWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGE 211

Query: 760 T 760
            
Sbjct: 212 V 212

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  116 bits (292), Expect = 2e-27
 Identities = 72/349 (20%), Positives = 121/349 (34%), Gaps = 50/349 (14%)

Query: 103 NLTLI-DLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNK 161
           N +L  +   N +SG+  D      K E   L   N                     +N+
Sbjct: 10  NFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGEN---------------------RNE 48

Query: 162 FSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLV 221
               +   +      L L+   L   +P +L   P +  ++++ N L  SLP+  + +L 
Sbjct: 49  AVSLLKECLINQFSELQLNRLNL-SSLPDNLP--PQITVLEITQNALI-SLPELPA-SLE 103

Query: 222 RLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNG 281
            L    N L   +P         L +L++DNN  T M+P+       L  +N   N+L  
Sbjct: 104 YLDACDNRLS-TLPE----LPASLKHLDVDNNQLT-MLPELPAL---LEYINADNNQLT- 153

Query: 282 SLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNL 341
            LP    SL +L V N QL  L    P     L+ L   ++S N L  S+P+      + 
Sbjct: 154 MLPELPTSLEVLSVRNNQLTFL----PELPESLEAL---DVSTNLLE-SLPAVPVRNHHS 205

Query: 342 ----VNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLF 397
               +    R+N +   IP +I ++     + L  N LS  I     +     +      
Sbjct: 206 EETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRI 264

Query: 398 EGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLS 446
              +           + D     F       ++Q+    +     N  S
Sbjct: 265 YFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFS 313

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 97.0 bits (241), Expect = 5e-21
 Identities = 75/439 (17%), Positives = 141/439 (32%), Gaps = 72/439 (16%)

Query: 10  LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGF 69
             L   ++NE VSL           L  +  NL+                          
Sbjct: 39  QALPGENRNEAVSLLKECLINQFSELQLNRLNLS-------------------------S 73

Query: 70  LPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLE 129
           LP NL     +  L ++ NA    +P+  A   +L  +D   N LS ++P+    L  L+
Sbjct: 74  LPDNLP--PQITVLEITQNALI-SLPELPA---SLEYLDACDNRLS-TLPELPASLKHLD 126

Query: 130 VLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIP 189
              +  N L   LP   A +  ++   A+ N+ +  +P   T  L  L +  N+ L  +P
Sbjct: 127 ---VDNNQLT-MLPELPALLEYIN---ADNNQLT-MLPELPTS-LEVLSVRNNQ-LTFLP 176

Query: 190 IDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLE 249
            +L    +L+ +D+S N+LE SLP                             E   +  
Sbjct: 177 -ELPE--SLEALDVSTNLLE-SLPAVPV-RNHHSE------------------ETEIFFR 213

Query: 250 LDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPS 309
              N  T  IP+ + S      + L  N L+  +   L         +      S     
Sbjct: 214 CRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQ 272

Query: 310 QFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQ 369
           Q +  + L+    +W     +  S +S + +        N  + +  + +++  S     
Sbjct: 273 QNTLHRPLADAVTAW--FPENKQSDVSQIWHAFEHEEHANTFS-AFLDRLSDTVSARNTS 329

Query: 370 LGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIP---TTFARLNGLEVLDLSNNRFSGEIP 426
               Q++  +  +    ++     +   +             N L    L +    G   
Sbjct: 330 GFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFD 389

Query: 427 QLLAQMPTLTQLLLTNNQL 445
                + +L + +     L
Sbjct: 390 NDTGALLSLGREMFRLEIL 408

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 89.6 bits (222), Expect = 1e-18
 Identities = 54/264 (20%), Positives = 86/264 (32%), Gaps = 32/264 (12%)

Query: 7   IDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQF-DELVSLKSLNLSKNK 65
           I+    L  ++  L SLP  N    + VL+ + N L         +   SL+ L+   N+
Sbjct: 58  INQFSELQLNRLNLSSLPD-NLPPQITVLEITQNALI-----SLPELPASLEYLDACDNR 111

Query: 66  FNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGEL 125
            +  LP        L+ L +  N     +P+  A    L  I+   N L+  +P+     
Sbjct: 112 LS-TLPELPAS---LKHLDVDNNQLT-MLPELPA---LLEYINADNNQLT-MLPE---LP 159

Query: 126 SKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGI------TRFLRNLDL 179
           + LEVL +  N L   LP    S+  L     + N    S+P                  
Sbjct: 160 TSLEVLSVRNNQL-TFLPELPESLEALD---VSTNLLE-SLPAVPVRNHHSEETEIFFRC 214

Query: 180 SYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATF 239
             N+ +  IP ++LS     TI L  N L  S  +                I    S   
Sbjct: 215 RENR-ITHIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYFSMSDGQ 272

Query: 240 TSLEKLTYLELDNNSFTGMIPQQL 263
            +       +     F       +
Sbjct: 273 QNTLHRPLADAVTAWFPENKQSDV 296

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.4 bits (185), Expect = 3e-14
 Identities = 39/182 (21%), Positives = 75/182 (41%), Gaps = 17/182 (9%)

Query: 283 LPI-QLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNL 341
           LPI    SL      N  ++    +  S + + +  +    + N     +   L  +   
Sbjct: 5   LPINNNFSLSQNSFYN-TISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQF 61

Query: 342 VNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPI 401
             L L + NL+ S+P+++     +  L++  N L  ++P +P  L+  L+   N     +
Sbjct: 62  SELQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPELPASLEY-LDACDNRLST-L 115

Query: 402 PTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVSVDTT 461
           P   A L   + LD+ NN+ +  +P+L A    L  +   NNQL+ +    +    +   
Sbjct: 116 PELPASL---KHLDVDNNQLT-MLPELPAL---LEYINADNNQLTMLPELPTSLEVLSVR 168

Query: 462 GN 463
            N
Sbjct: 169 NN 170

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.1 bits (179), Expect = 2e-13
 Identities = 44/191 (23%), Positives = 67/191 (35%), Gaps = 16/191 (8%)

Query: 7   IDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKF 66
              LK L+   N+L  LP     A LE ++  +N L     L  +   SL+ L++  N+ 
Sbjct: 119 PASLKHLDVDNNQLTMLP--ELPALLEYINADNNQLT---MLP-ELPTSLEVLSVRNNQL 172

Query: 67  NGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLT----LIDLSANNLSGSVPDRI 122
             FLP        LE L +S N     +P       +            N ++  +P+ I
Sbjct: 173 T-FLPELPES---LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENI 226

Query: 123 GELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYN 182
             L     +IL  N L  R+  SL+  T    +   +  FS S     T      D    
Sbjct: 227 LSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTA 286

Query: 183 KLLGVIPIDLL 193
                   D+ 
Sbjct: 287 WFPENKQSDVS 297

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 69.2 bits (169), Expect = 2e-12
 Identities = 48/303 (15%), Positives = 92/303 (30%), Gaps = 28/303 (9%)

Query: 7   IDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKF 66
              L+ L+   N L +LP     A L+ LD  +N L     L  +    L+ +N   N+ 
Sbjct: 99  PASLEYLDACDNRLSTLP--ELPASLKHLDVDNNQL---TMLP-ELPALLEYINADNNQL 152

Query: 67  NGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELS 126
              LP        LE L +  N     +P+      +L  +D+S N L  S+P       
Sbjct: 153 T-MLPELPTS---LEVLSVRNNQL-TFLPELP---ESLEALDVSTNLLE-SLPAVPVRNH 203

Query: 127 KLE----VLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYN 182
             E          N +   +P ++ S+          N  S  +   +++     D    
Sbjct: 204 HSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGP 262

Query: 183 KLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSL 242
           ++   +     +  +    D        +   ++S          +       +     L
Sbjct: 263 RIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEH------ANTFSAFL 316

Query: 243 EKLTYLE--LDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQL 300
           ++L+      + + F   +   L    +   L      +             L   NL+ 
Sbjct: 317 DRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRK 376

Query: 301 NKL 303
             L
Sbjct: 377 TLL 379

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score =  113 bits (283), Expect = 3e-27
 Identities = 48/275 (17%), Positives = 92/275 (33%), Gaps = 40/275 (14%)

Query: 592 KIFQLGSHHKFDKELEV--LGKLSNSNVMTPLAYVLASDSA-----YLFYEYAPKGTLFD 644
           K+F   +   F  E  +  +  + + N+   +       +       L  EY P G+L  
Sbjct: 42  KVFSFANRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXK 101

Query: 645 VLHGCLENALDWASRYSIAVGVAQGLAFLH------GFTSNPILLLDLSTRNIFLKSLKE 698
            L     +  DW S   +A  V +GLA+LH            I   DL++RN+ +K+   
Sbjct: 102 YLS---LHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGT 158

Query: 699 PQIGDIEL------CKVIDPSKSTGSLSTVAGSVGYIPPEYA-------YTMRVTMAGNV 745
             I D  L       +++ P +   +  +  G++ Y+ PE                  ++
Sbjct: 159 CVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDM 218

Query: 746 YSFGVILLELLTGKTAVNQGNEL-------AKWVLRNSAQQDKLDHILDFN----VSRTS 794
           Y+ G+I  E+    T +  G  +          V  +   +D    +             
Sbjct: 219 YALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAW 278

Query: 795 LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
                 + ++ +    C     EAR   +     +
Sbjct: 279 KENSLAVRSLKETIEDCWDQDAEARLTAQXAEERM 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  112 bits (282), Expect = 5e-27
 Identities = 54/293 (18%), Positives = 107/293 (36%), Gaps = 40/293 (13%)

Query: 165 SVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNM---SPNLV 221
           S+P G+T  +++LDLS N++  +   DL    NLQ + L+ N +  ++ ++      +L 
Sbjct: 45  SIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLE 103

Query: 222 RLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQL-GSCRSLTLLNLAQNELN 280
            L L  N L   + S+ F  L  LT+L L  N +  +    L      L +L +   +  
Sbjct: 104 HLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162

Query: 281 GSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTN 340
             +  +                        F+ L  L  + I  + L    P  L ++ N
Sbjct: 163 TKIQRKD-----------------------FAGLTFLEELEIDASDLQSYEPKSLKSIQN 199

Query: 341 LVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIA----------L 390
           + +L L        +   +    S+  L+L    L           +            +
Sbjct: 200 VSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259

Query: 391 NLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNN 443
            ++       +     +++GL  L+ S N+       +  ++ +L ++ L  N
Sbjct: 260 KITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  109 bits (275), Expect = 4e-26
 Identities = 61/294 (20%), Positives = 114/294 (38%), Gaps = 42/294 (14%)

Query: 94  IPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLS 153
           IP G+ +   +  +DLS N ++      +     L+ L+L++N            I T+ 
Sbjct: 46  IPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-----------INTIE 92

Query: 154 RFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSH-PNLQTIDLSVNMLEGSL 212
             +     FS          L +LDLSYN L   +         +L  ++L  N  + +L
Sbjct: 93  EDS-----FSS------LGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYK-TL 139

Query: 213 PQNMS----PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRS 268
            +         L  LR+G      +I    F  L  L  LE+D +      P+ L S ++
Sbjct: 140 GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN 199

Query: 269 LTLLNLAQNEL--------NGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTM 320
           ++ L L   +         + +  ++   L    +     ++LS    +   +      +
Sbjct: 200 VSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259

Query: 321 NISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSI-TNMRSLIELQLGGN 373
            I+  SL   +   L+ ++ L+ L   +N L  S+P+ I   + SL ++ L  N
Sbjct: 260 KITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 86.3 bits (214), Expect = 3e-18
 Identities = 49/262 (18%), Positives = 87/262 (33%), Gaps = 40/262 (15%)

Query: 10  LKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQ-FDELVSLKSLNLSKNKF 66
           L+ L  + N + ++   +F+    LE LD S N L  N++   F  L SL  LNL  N +
Sbjct: 78  LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPY 136

Query: 67  NGFLPINL-GKTKALEELVLSGNAFHGEIPKGI-ADYRNLTLIDLSANNLSGSVPDRIGE 124
                 +L      L+ L +       +I +   A    L  +++ A++L    P  +  
Sbjct: 137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196

Query: 125 LSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSG----SVPGGITR------FL 174
           +  +  LIL        L   +   +++                 +  G T         
Sbjct: 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256

Query: 175 RNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEI 234
           RN+ ++   L   +   L     L  ++ S N L+                        +
Sbjct: 257 RNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-----------------------V 292

Query: 235 PSATFTSLEKLTYLELDNNSFT 256
           P   F  L  L  + L  N + 
Sbjct: 293 PDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 29/145 (20%), Positives = 53/145 (36%), Gaps = 13/145 (8%)

Query: 6   GIDGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSK 63
           G+  L+ L    ++L S    +      +  L          + +  D   S++ L L  
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231

Query: 64  NKFNGF----LPI----NLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLS 115
              + F    L      +L K      + ++  +   ++ K +     L  ++ S N L 
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK 290

Query: 116 GSVPDRI-GELSKLEVLILSANNLD 139
            SVPD I   L+ L+ + L  N  D
Sbjct: 291 -SVPDGIFDRLTSLQKIWLHTNPWD 314

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  105 bits (265), Expect = 3e-25
 Identities = 55/217 (25%), Positives = 87/217 (40%), Gaps = 10/217 (4%)

Query: 165 SVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNM---SPNLV 221
           +VP GI    + + L  N++  V      +  NL  + L  N+L   +          L 
Sbjct: 25  AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLE 83

Query: 222 RLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNG 281
           +L L  N  +  +  ATF  L +L  L LD      + P       +L  L L  N L  
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ- 142

Query: 282 SLPIQ-LGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSF-LSNLT 339
           +LP      LG L  + L  N++S      F  L  L  + +  N ++  +      +L 
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLG 201

Query: 340 NLVNLNLRQNNLNGSIPNSI-TNMRSLIELQLGGNQL 375
            L+ L L  NNL+ ++P      +R+L  L+L  N  
Sbjct: 202 RLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  100 bits (252), Expect = 1e-23
 Identities = 54/255 (21%), Positives = 89/255 (34%), Gaps = 51/255 (20%)

Query: 194 SHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNN 253
            +    T       L+ ++P  +     R+ L  N  I  +P+A+F +   LT L L +N
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGIPAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSN 66

Query: 254 SFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQ 313
               +          L  L+L+ N    S+                        P+ F  
Sbjct: 67  VLARIDAAAFTGLALLEQLDLSDNAQLRSVD-----------------------PATFHG 103

Query: 314 LKLLSTMNISWNSLSGSIPS-FLSNLTNLVNLNLRQNNLNGSIPNSI-TNMRSLIELQLG 371
           L  L T+++    L   +       L  L  L L+ N L  ++P+    ++ +L  L L 
Sbjct: 104 LGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLH 161

Query: 372 GNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQ 431
           GN++S ++P                        F  L+ L+ L L  NR +   P     
Sbjct: 162 GNRIS-SVP---------------------ERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199

Query: 432 MPTLTQLLLTNNQLS 446
           +  L  L L  N LS
Sbjct: 200 LGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 92.0 bits (229), Expect = 1e-20
 Identities = 60/265 (22%), Positives = 86/265 (32%), Gaps = 56/265 (21%)

Query: 93  EIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTL 152
            +P GI        I L  N +S            L +L L +N            +  +
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-----------LARI 71

Query: 153 SRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSH-PNLQTIDLSVNMLEGS 211
              A     F+G         L  LDLS N  L  +          L T+ L    L+  
Sbjct: 72  DAAA-----FTGL------ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-E 119

Query: 212 LPQNM---SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRS 268
           L   +      L  L L  N  +  +P  TF  L  LT+L L  N  + +  +      S
Sbjct: 120 LGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178

Query: 269 LTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLS 328
           L  L L QN +   +                        P  F  L  L T+ +  N+LS
Sbjct: 179 LDRLLLHQNRVA-HVH-----------------------PHAFRDLGRLMTLYLFANNLS 214

Query: 329 GSIPS-FLSNLTNLVNLNLRQNNLN 352
            ++P+  L+ L  L  L L  N   
Sbjct: 215 -ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 88.9 bits (221), Expect = 1e-19
 Identities = 56/267 (20%), Positives = 83/267 (31%), Gaps = 55/267 (20%)

Query: 16  SKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLG 75
            +  L ++P     A  + +    N ++      F    +L  L L  N           
Sbjct: 19  PQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-------- 69

Query: 76  KTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRI-GELSKLEVLILS 134
                    +   AF G           L  +DLS N    SV       L +L  L L 
Sbjct: 70  --------RIDAAAFTG--------LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113

Query: 135 ANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLS 194
                         +  L         F G         L+ L L  N  L  +P D   
Sbjct: 114 RCG-----------LQELGPGL-----FRG------LAALQYLYLQDNA-LQALPDDTFR 150

Query: 195 H-PNLQTIDLSVNMLEGSLPQNM---SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLEL 250
              NL  + L  N +  S+P+       +L RL L  N  +  +    F  L +L  L L
Sbjct: 151 DLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYL 208

Query: 251 DNNSFTGMIPQQLGSCRSLTLLNLAQN 277
             N+ + +  + L   R+L  L L  N
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 10  LKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFN 67
           L  L    N + S+P   F G   L+ L    N +       F +L  L +L L  N  +
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

Query: 68  GFLPINLGKTKALEELVLSGNAFH 91
                 L   +AL+ L L+ N + 
Sbjct: 215 ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 1/68 (1%)

Query: 383 PPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTN 442
           P   Q  + L  N        +F     L +L L +N  +         +  L QL L++
Sbjct: 31  PAASQR-IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 443 NQLSGVVP 450
           N     V 
Sbjct: 90  NAQLRSVD 97

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  105 bits (263), Expect = 6e-25
 Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 19/181 (10%)

Query: 584 IKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLF 643
           IK++    +         F  EL  L ++++ N++      L  +   L  EYA  G+L+
Sbjct: 36  IKQIESESERKA------FIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEYAEGGSLY 87

Query: 644 DVLHGC-LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIG 702
           +VLHG         A   S  +  +QG+A+LH      ++  DL   N+ L +       
Sbjct: 88  NVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVA------- 140

Query: 703 DIELCKVID--PSK-STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
              + K+ D   +      ++   GS  ++ PE       +   +V+S+G+IL E++T +
Sbjct: 141 GGTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRR 200

Query: 760 T 760
            
Sbjct: 201 K 201

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score =  102 bits (256), Expect = 5e-24
 Identities = 56/273 (20%), Positives = 81/273 (29%), Gaps = 28/273 (10%)

Query: 197 NLQTIDLSVNMLEGSLPQNMSPNLVRLR---LGTNLLIGEIPSAT--FTSLEKLTYLELD 251
           +L+ +   V+              + L+   +    +   I         +  L  L L+
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 252 NNSFTGMIPQQLGSCRSLTL--LNLAQNELNGSLP----IQLGSLGILQVMNLQLNKLSG 305
           N   TG  P  L       L  LNL              +Q      L+V+++       
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 306 EIPSQFSQLKLLSTMNISWNSLSGSIP----SFLSNLTNLVNLNLRQNNLN---GSIPNS 358
               Q      LST+++S N   G               L  L LR   +    G     
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 359 ITNMRSLIELQLGGNQLSGTIPM----MPPRLQIALNLSSNLFEGPIPTTFARLNGLEVL 414
                 L  L L  N L           P +L   LNLS    +       A+L    VL
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS-LNLSFTGLKQVPKGLPAKL---SVL 279

Query: 415 DLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSG 447
           DLS NR     P    ++P +  L L  N    
Sbjct: 280 DLSYNRLD-RNPSPD-ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 98.4 bits (245), Expect = 1e-22
 Identities = 54/263 (20%), Positives = 89/263 (33%), Gaps = 16/263 (6%)

Query: 174 LRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGE 233
             + +    +   +I    L    ++   +   +L G+L       L  L L    + G 
Sbjct: 51  RVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT 110

Query: 234 IP-SATFTSLEKLTYLELDNNSFTGMIPQ----QLGSCRSLTLLNLAQNELNGSLPIQLG 288
            P      +   L  L L N S+          Q      L +L++AQ         Q+ 
Sbjct: 111 APPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170

Query: 289 SLGILQVMNLQLNKLSGEI-------PSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNL 341
               L  ++L  N   GE        P +F  L++L+  N    + SG   +  +    L
Sbjct: 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL 230

Query: 342 VNLNLRQNNLNGSIPNSI-TNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGP 400
             L+L  N+L  +           L  L L    L      +P +L + L+LS N  +  
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSV-LDLSYNRLDR- 288

Query: 401 IPTTFARLNGLEVLDLSNNRFSG 423
            P +   L  +  L L  N F  
Sbjct: 289 NP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 93.0 bits (231), Expect = 9e-21
 Identities = 49/259 (18%), Positives = 81/259 (31%), Gaps = 34/259 (13%)

Query: 10  LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELV--SLKSLNLSKNKFN 67
           ++        L       G +GL+ L   +  + G       E     L  LNL    + 
Sbjct: 75  VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA 134

Query: 68  GFLP----INLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRI- 122
                   +       L+ L ++         + +  +  L+ +DLS N   G       
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194

Query: 123 ---GELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDL 179
               +   L+VL L    ++       A      +                   L+ LDL
Sbjct: 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ-------------------LQGLDL 235

Query: 180 SYNKLLGVIPIDLLSHP-NLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSAT 238
           S+N L           P  L +++LS   L+  +P+ +   L  L L  N L    PS  
Sbjct: 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYNRL-DRNPS-- 291

Query: 239 FTSLEKLTYLELDNNSFTG 257
              L ++  L L  N F  
Sbjct: 292 PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 86.1 bits (213), Expect = 2e-18
 Identities = 46/245 (18%), Positives = 68/245 (27%), Gaps = 35/245 (14%)

Query: 219 NLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQ---LGSCRSLTLLNLA 275
           +L  L    +                L  L +        I      +     L  L L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 276 QNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFL 335
             E+ G+ P  L       +  L L                    N+SW +    +    
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLR-------------------NVSWATRDAWLAELQ 144

Query: 336 SNL-TNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMP-------PRLQ 387
             L   L  L++ Q +        +    +L  L L  N   G   ++        P LQ
Sbjct: 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204

Query: 388 IALNLSSNLFE---GPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMP-TLTQLLLTNN 443
           + L L +   E   G      A    L+ LDLS+N             P  L  L L+  
Sbjct: 205 V-LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

Query: 444 QLSGV 448
            L  V
Sbjct: 264 GLKQV 268

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.2 bits (195), Expect = 4e-16
 Identities = 49/219 (22%), Positives = 72/219 (32%), Gaps = 19/219 (8%)

Query: 9   GLKLLNFSKNELVSLPTFNGFAG----LEVLDFSSNNLNGNIN----LQFDELVSLKSLN 60
           GL+ L     E+               L +L+  + +          LQ      LK L+
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 61  LSKNKFNGFLPINLGKTKALEELVLSGNAFHGEI-------PKGIADYRNLTLIDLSANN 113
           +++     F    +    AL  L LS N   GE        P      + L L +     
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 114 LSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASI-TTLSRFAANQNKFSGSVPGGITR 172
            SG          +L+ L LS N+L            + L+    +       VP G+  
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA 274

Query: 173 FLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGS 211
            L  LDLSYN+L      D L  P +  + L  N    S
Sbjct: 275 KLSVLDLSYNRLDRNPSPDEL--PQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 28/135 (20%), Positives = 44/135 (32%), Gaps = 25/135 (18%)

Query: 5   GGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKN 64
                L++L      +                      +G  +      V L+ L+LS N
Sbjct: 198 LKFPTLQVLALRNAGM-------------------ETPSGVCSALAAARVQLQGLDLSHN 238

Query: 65  KFNGFLP-INLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIG 123
                    +      L  L LS      ++PKG+     L+++DLS N L    P    
Sbjct: 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLD-RNPS-PD 293

Query: 124 ELSKLEVLILSANNL 138
           EL ++  L L  N  
Sbjct: 294 ELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 3   SCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLS 62
           SC     L  LN S   L  +P     A L VLD S N L+   N   DEL  + +L+L 
Sbjct: 248 SCDWPSQLNSLNLSFTGLKQVPK-GLPAKLSVLDLSYNRLDR--NPSPDELPQVGNLSLK 304

Query: 63  KNKF 66
            N F
Sbjct: 305 GNPF 308

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score =  102 bits (255), Expect = 1e-23
 Identities = 43/261 (16%), Positives = 88/261 (33%), Gaps = 38/261 (14%)

Query: 584 IKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLF 643
           I+ ++             F +E+    +  + NV+  +   ++     +        TL+
Sbjct: 60  IRLIDIERDNEDQLK--AFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLY 117

Query: 644 DVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL--KSLKEPQI 701
            V+    +  LD      IA  + +G+ +LH   +  IL  DL ++N+F     +    I
Sbjct: 118 SVVRD-AKIVLDVNKTRQIAQEIVKGMGYLH---AKGILHKDLKSKNVFYDNGKVV---I 170

Query: 702 GDIELCKVID---PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGN---------VYSFG 749
            D  L  +       +    L    G + ++ PE    +      +         V++ G
Sbjct: 171 TDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALG 230

Query: 750 VILLELLTGKTA-VNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVA 808
            I  EL   +     Q  E   W +    + +    +    + +    +   +L      
Sbjct: 231 TIWYELHAREWPFKTQPAEAIIWQMGTGMKPN----LSQIGMGK---EISDILL------ 277

Query: 809 VACVSVSPEARPKMKSVLRML 829
             C +   E RP    ++ ML
Sbjct: 278 -FCWAFEQEERPTFTKLMDML 297

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  100 bits (251), Expect = 2e-23
 Identities = 48/205 (23%), Positives = 91/205 (44%), Gaps = 24/205 (11%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNW---SDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAY 623
           F   +K   +       IK L       +   +    +F +E+ ++  L++ N++     
Sbjct: 32  FGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGL 91

Query: 624 VLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILL 683
           +   +   +  E+ P G L+  L     + + W+ +  + + +A G+ ++      PI+ 
Sbjct: 92  MH--NPPRMVMEFVPCGDLYHRLLDK-AHPIKWSVKLRLMLDIALGIEYMQNQN-PPIVH 147

Query: 684 LDLSTRNIFLKSLKEPQIGDIELCKVID--PSK-STGSLSTVAGSVGYIPPE------YA 734
            DL + NIFL+SL E         KV D   S+ S  S+S + G+  ++ PE       +
Sbjct: 148 RDLRSPNIFLQSLDE---NAPVCAKVADFGLSQQSVHSVSGLLGNFQWMAPETIGAEEES 204

Query: 735 YTMRVTMAGNVYSFGVILLELLTGK 759
           YT +     + YSF +IL  +LTG+
Sbjct: 205 YTEKA----DTYSFAMILYTILTGE 225

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 99.7 bits (249), Expect = 5e-23
 Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 14/182 (7%)

Query: 584 IKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLF 643
           +K L   D  F     ++F +E+ ++ +L + N++  +  V    +  +  EY  +G+L+
Sbjct: 65  VKILMEQD--FHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLY 122

Query: 644 DVLHGC-LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIG 702
            +LH       LD   R S+A  VA+G+ +LH     PI+  +L + N+ +      ++ 
Sbjct: 123 RLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRN-PPIVHRNLKSPNLLVDKKYTVKVC 181

Query: 703 DIELCKVIDPSKSTGSLSTVAGSVGYIPPE----YAYTMRVTMAGNVYSFGVILLELLTG 758
           D  L ++   + +  S  + AG+  ++ PE         +     +VYSFGVIL EL T 
Sbjct: 182 DFGLSRLK--ASTFLSSKSAAGTPEWMAPEVLRDEPSNEKS----DVYSFGVILWELATL 235

Query: 759 KT 760
           + 
Sbjct: 236 QQ 237

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score =  100 bits (250), Expect = 6e-23
 Identities = 50/296 (16%), Positives = 101/296 (34%), Gaps = 51/296 (17%)

Query: 567 RFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEV--LGKLSNSNVMTPLAYV 624
           RF   ++     G    +K  +  ++         + +E E+     L + N++  +A  
Sbjct: 54  RFGEVWRGKW-RGEEVAVKIFSSREE-------RSWFREAEIYQTVMLRHENILGFIAAD 105

Query: 625 LASDSAYLFY----EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLH----GF 676
              +  +       +Y   G+LFD L+      +       +A+  A GLA LH    G 
Sbjct: 106 NKDNGTWTQLWLVSDYHEHGSLFDYLN---RYTVTVEGMIKLALSTASGLAHLHMEIVGT 162

Query: 677 TSNP-ILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLS--TVAGSVGYIPPE- 732
              P I   DL ++NI +K      I D+ L    D +  T  ++     G+  Y+ PE 
Sbjct: 163 QGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEV 222

Query: 733 ---------YAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAK----WVLRNSAQQ 779
                    +    R     ++Y+ G++  E+    +      +        V  + + +
Sbjct: 223 LDDSINMKHFESFKRA----DIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVE 278

Query: 780 DKLDHI------LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
           +    +       +      S      M  +++    C   +  AR     + + L
Sbjct: 279 EMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMR---ECWYANGAARLTALRIKKTL 331

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 97.3 bits (243), Expect = 2e-22
 Identities = 37/181 (20%), Positives = 74/181 (40%), Gaps = 15/181 (8%)

Query: 584 IKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY--EYAPKGT 641
           +K L   D   +      F++E   L   S+ NV+  L    +  + +      + P G+
Sbjct: 38  VKVLKVRDWSTRKSR--DFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGS 95

Query: 642 LFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQI 701
           L++VLH      +D +     A+ +A+G+AFLH      I    L++R++ +      +I
Sbjct: 96  LYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLE-PLIPRHALNSRSVMIDEDMTARI 154

Query: 702 GDIELCKVIDPSKSTGSLSTVAGSVGYIPPE---YAYTMRVTMAGNVYSFGVILLELLTG 758
              ++                  +  ++ PE            + +++SF V+L EL+T 
Sbjct: 155 SMADVKFSF-------QSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTR 207

Query: 759 K 759
           +
Sbjct: 208 E 208

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 97.4 bits (243), Expect = 2e-22
 Identities = 54/252 (21%), Positives = 101/252 (40%), Gaps = 25/252 (9%)

Query: 584 IKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLF 643
           +K LN +           F  E+ VL K  + N++  + Y   +    +  ++    +L+
Sbjct: 51  VKMLNVTA--PTPQQLQAFKNEVGVLRKTRHVNILLFMGYST-APQLAIVTQWCEGSSLY 107

Query: 644 DVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGD 703
             LH   E   +      IA   A+G+ +LH   +  I+  DL + NIFL      +IGD
Sbjct: 108 HHLHA-SETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGD 163

Query: 704 IELCKVIDPSKSTGSLSTVAGSVGYIPPE---YAYTMRVTMAGNVYSFGVILLELLTGKT 760
             L         +     ++GS+ ++ PE      +   +   +VY+FG++L EL+TG+ 
Sbjct: 164 FGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQL 223

Query: 761 ---AVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPE 817
               +N  +++ + V R S   D      +         ++  M         C+    +
Sbjct: 224 PYSNINNRDQIIEMVGRGSLSPDLSKVRSN-----CPKRMKRLMA-------ECLKKKRD 271

Query: 818 ARPKMKSVLRML 829
            RP    +L  +
Sbjct: 272 ERPSFPRILAEI 283

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 96.3 bits (240), Expect = 1e-21
 Identities = 52/294 (17%), Positives = 101/294 (34%), Gaps = 47/294 (15%)

Query: 567 RFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEV--LGKLSNSNVMTPLAYV 624
           R+   +      G    +K    +++         + +E E+     + + N++  +A  
Sbjct: 49  RYGEVWMGKW-RGEKVAVKVFFTTEE-------ASWFRETEIYQTVLMRHENILGFIAAD 100

Query: 625 LASDSAYLFY----EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTS-- 678
           +    ++       +Y   G+L+D L       LD  S   +A     GL  LH      
Sbjct: 101 IKGTGSWTQLYLITDYHENGSLYDYLK---STTLDAKSMLKLAYSSVSGLCHLHTEIFST 157

Query: 679 ---NPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLS--TVAGSVGYIPPE- 732
                I   DL ++NI +K      I D+ L        +   +   T  G+  Y+PPE 
Sbjct: 158 QGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEV 217

Query: 733 ---------YAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNEL----AKWVLRNSAQQ 779
                    +   +      ++YSFG+IL E+     +     E        V  + + +
Sbjct: 218 LDESLNRNHFQSYIMA----DMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYE 273

Query: 780 DKLDHILDFNVSR----TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
           D  + +      R       +    +  + K+   C + +P +R     V + L
Sbjct: 274 DMREIVC-IKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTL 326

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 93.5 bits (233), Expect = 3e-21
 Identities = 59/263 (22%), Positives = 95/263 (36%), Gaps = 57/263 (21%)

Query: 165 SVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNM---SPNLV 221
            +P  +    +NLDLS+N L  +      S P LQ +DLS   ++ ++         +L 
Sbjct: 21  KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS 79

Query: 222 RLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNG 281
            L L  N +   +    F+ L  L  L     +   +    +G  ++L  LN+A N    
Sbjct: 80  TLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN---- 134

Query: 282 SLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSF-LSNLTN 340
                             +     ++P  FS L  L  +++S N +  SI    L  L  
Sbjct: 135 -----------------LIQSF--KLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQ 174

Query: 341 L----VNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNL 396
           +    ++L+L  N +N  I         L EL L  NQL  ++P                
Sbjct: 175 MPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVP---------------- 216

Query: 397 FEGPIPTTFARLNGLEVLDLSNN 419
                   F RL  L+ + L  N
Sbjct: 217 -----DGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 86.9 bits (216), Expect = 6e-19
 Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 27/237 (11%)

Query: 211 SLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLT 270
            +P N+  +   L L  N  +  + S +F S  +L  L+L       +      S   L+
Sbjct: 21  KIPDNLPFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 271 LLNLAQNELNGSLPIQL-GSLGILQVMNLQLNKLSGEIPSQ-FSQLKLLSTMNISWNSLS 328
            L L  N +  SL +     L  LQ +      L+  + +     LK L  +N++ N + 
Sbjct: 80  TLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ 137

Query: 329 GSIPS--FLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRL 386
            S     + SNLTNL +L+L  N +  SI  +   +R L ++ L               L
Sbjct: 138 -SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTD--LRVLHQMPL---------------L 178

Query: 387 QIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNN 443
            ++L+LS N      P  F  +  L+ L L  N+       +  ++ +L ++ L  N
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 72.3 bits (178), Expect = 5e-14
 Identities = 51/252 (20%), Positives = 86/252 (34%), Gaps = 55/252 (21%)

Query: 10  LKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQ---FDELVSLKSLNLSKN 64
            K L+ S N L  L   +F  F  L+VLD S   +     ++   +  L  L +L L+ N
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGN 86

Query: 65  KFNGFLPINL-GKTKALEELVLSGNAFHGEIPKGIADY-RNLTLIDLSANNL-SGSVPDR 121
                L +       +L++LV         +      + + L  ++++ N + S  +P+ 
Sbjct: 87  PIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 122 IGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSY 181
              L+ LE L LS+N +     T L  +  +                       +LDLS 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM------------------PLLNLSLDLSL 186

Query: 182 NKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTS 241
           N  +  I         L+ + L  N L+                        +P   F  
Sbjct: 187 NP-MNFIQPGAFKEIRLKELALDTNQLK-----------------------SVPDGIFDR 222

Query: 242 LEKLTYLELDNN 253
           L  L  + L  N
Sbjct: 223 LTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.8 bits (156), Expect = 3e-11
 Identities = 27/157 (17%), Positives = 60/157 (38%), Gaps = 27/157 (17%)

Query: 293 LQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPS-FLSNLTNLVNLNLRQNNL 351
            + ++L  N L       F     L  +++S   +  +I      +L++L  L L  N +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI 88

Query: 352 NGSIPNSI-TNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNG 410
             S+     + + SL +L      L+ ++                            L  
Sbjct: 89  Q-SLALGAFSGLSSLQKLVAVETNLA-SLE---------------------NFPIGHLKT 125

Query: 411 LEVLDLSNNRF-SGEIPQLLAQMPTLTQLLLTNNQLS 446
           L+ L++++N   S ++P+  + +  L  L L++N++ 
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 91.6 bits (228), Expect = 2e-20
 Identities = 54/294 (18%), Positives = 105/294 (35%), Gaps = 47/294 (15%)

Query: 567 RFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEV--LGKLSNSNVMTPLAYV 624
           R+   ++     G +  +K  +  D+         + +E E+     L + N++  +A  
Sbjct: 20  RYGEVWRGSW-QGENVAVKIFSSRDE-------KSWFRETELYNTVMLRHENILGFIASD 71

Query: 625 LASDSAYLFY----EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLH-----G 675
           + S  +         Y   G+L+D L       LD  S   I + +A GLA LH      
Sbjct: 72  MTSRHSSTQLWLITHYHEMGSLYDYLQ---LTTLDTVSCLRIVLSIASGLAHLHIEIFGT 128

Query: 676 FTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLS--TVAGSVGYIPPE- 732
                I   DL ++NI +K   +  I D+ L  +   S +   +      G+  Y+ PE 
Sbjct: 129 QGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEV 188

Query: 733 ---------YAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELA----KWVLRNSAQQ 779
                    +    RV    ++++FG++L E+     +     +        V  + + +
Sbjct: 189 LDETIQVDCFDSYKRV----DIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFE 244

Query: 780 DKLDHILDFNVSR----TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
           D    +      R            + ++ K+   C   +P AR     + + L
Sbjct: 245 DMRKVVCVDQQ-RPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTL 297

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 93.0 bits (231), Expect = 2e-20
 Identities = 42/264 (15%), Positives = 83/264 (31%), Gaps = 37/264 (14%)

Query: 165 SVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNM---SPNLV 221
            +P  + R    L     KL  +         +L+ I++S N +   +  ++    P L 
Sbjct: 23  EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH 82

Query: 222 RLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNG 281
            +R+     +  I    F +L  L YL + N     +            LL++  N    
Sbjct: 83  EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH 142

Query: 282 SLP----IQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSN 337
           ++     + L       ++ L  N +     S F+  +L        N+L          
Sbjct: 143 TIERNSFVGLSFE--SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG 200

Query: 338 LTNLVNLNLRQNNLNGSIPNSI-TNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNL 396
            +  V L++ +  ++ S+P+    N++ L         L   +P                
Sbjct: 201 ASGPVILDISRTRIH-SLPSYGLENLKKLRARST--YNLK-KLP---------------- 240

Query: 397 FEGPIPTTFARLNGLEVLDLSNNR 420
                  T  +L  L    L+   
Sbjct: 241 -------TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 92.6 bits (230), Expect = 3e-20
 Identities = 43/260 (16%), Positives = 76/260 (29%), Gaps = 40/260 (15%)

Query: 195 HPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNS 254
           H + +      + +   +P ++  N + LR      +  I    F+    L  +E+  N 
Sbjct: 8   HCSNRVFLCQESKVT-EIPSDLPRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQND 65

Query: 255 FTGMIP----QQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQ 310
              +I       L     + +                             N L    P  
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKA--------------------------NNLLYINPEA 99

Query: 311 FSQLKLLSTMNISWNSLSGSIPSFL-SNLTNLVNLNLRQNNLNGSIP-NSITNMRS-LIE 367
           F  L  L  + IS   +   +P     +    V L+++ N    +I  NS   +    + 
Sbjct: 100 FQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158

Query: 368 LQLGGNQLSGTIPMM---PPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGE 424
           L L  N +   I        +L       +N  E      F   +G  +LD+S  R    
Sbjct: 159 LWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217

Query: 425 IPQLLAQMPTLTQLLLTNNQ 444
               L  +  L      N +
Sbjct: 218 PSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 78.3 bits (193), Expect = 1e-15
 Identities = 41/291 (14%), Positives = 80/291 (27%), Gaps = 56/291 (19%)

Query: 16  SKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLG 75
            ++++  +P+ +       L F    L       F     L+ + +S+N     +     
Sbjct: 17  QESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE---- 71

Query: 76  KTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRI-GELSKLEVLILS 134
                       + F             L  I +   N    +       L  L+ L++S
Sbjct: 72  -----------ADVFSN--------LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112

Query: 135 ANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLS 194
                         I  L            S+          LD+  N  +  I  +   
Sbjct: 113 NTG-----------IKHLPDVH-----KIHSLQ------KVLLDIQDNINIHTIERNSFV 150

Query: 195 H--PNLQTIDLSVNMLEGSLPQNM--SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLEL 250
                   + L+ N ++  +  +      L  L L  N  + E+P+  F        L++
Sbjct: 151 GLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209

Query: 251 DNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLN 301
                  +    L + + L   +    +    LP  L  L  L   +L   
Sbjct: 210 SRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 46/250 (18%), Positives = 82/250 (32%), Gaps = 53/250 (21%)

Query: 10  LKLLNFSKNELVSLP---TFNGFAGLEVLDFSSNNLNGNI-NLQFDELVSLKSLNLSKNK 65
           L+ +  S+N+++ +     F+    L  +     N    I    F  L +L+ L +S   
Sbjct: 56  LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115

Query: 66  FNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGEL 125
                 ++   +     L +  N     I +        + + LS               
Sbjct: 116 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERN-------SFVGLSFE------------- 155

Query: 126 SKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLL 185
               +L L+ N            I  +   A     F+G+        L  L+LS N  L
Sbjct: 156 --SVILWLNKNG-----------IQEIHNSA-----FNGTQ-------LDELNLSDNNNL 190

Query: 186 GVIPIDLLSH-PNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEK 244
             +P D+         +D+S   +  SLP     NL +LR  +   + ++P+     L  
Sbjct: 191 EELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLPT--LEKLVA 247

Query: 245 LTYLELDNNS 254
           L    L   S
Sbjct: 248 LMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 39/248 (15%), Positives = 77/248 (31%), Gaps = 16/248 (6%)

Query: 10  LKLLNFSK-NELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKF 66
           L  +   K N L+ +    F     L+ L  S+  +    ++     +    L++  N  
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140

Query: 67  NGFLPINL--GKTKALEELVLSGNAFHGEIPKGIADY-RNLTLIDLSANNLSGSVPDRIG 123
              +  N   G +     L L+ N    EI     +  +   L     NNL     D   
Sbjct: 141 IHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199

Query: 124 ELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNK 183
             S   +L +S   +       L ++  L   +    K   ++       L    L+Y  
Sbjct: 200 GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEK--LVALMEASLTY-- 255

Query: 184 LLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLE 243
                P    +  N +     ++ +          + +    G    + E   ++++   
Sbjct: 256 -----PSHCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDNESSYSRGF 310

Query: 244 KLTYLELD 251
            +TY E D
Sbjct: 311 DMTYTEFD 318

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 90.0 bits (224), Expect = 5e-19
 Identities = 77/458 (16%), Positives = 143/458 (31%), Gaps = 87/458 (18%)

Query: 55  SLKSLNLSKNKFNGFLPINLGKT-KALEELVLSGNAFHGE----IPKGIADYRNLTLIDL 109
            ++SL++   + +      L    +  + + L            I   +     L  ++L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 110 SANNLSGSVPDRIGEL-----SKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSG 164
            +N L       + +       K++ L L    L G     L+S                
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST-----LRTLPT---- 114

Query: 165 SVPGGITRFLRNLDLSYNKL--LGVIPI-DLLSHPN--LQTIDLSVNML--EG------S 211
                    L+ L LS N L   G+  + + L  P   L+ + L    L           
Sbjct: 115 ---------LQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165

Query: 212 LPQNMSPNLVRLRLGTNLLIGE----IPSATFTSLEKLTYLELDNNSFT----GMIPQQL 263
           L     P+   L +  N +       +      S  +L  L+L++   T      +   +
Sbjct: 166 LRAK--PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223

Query: 264 GSCRSLTLLNLAQNELNGS-----LPIQLGSLGILQVMNLQLNKLSGE----IPSQFSQL 314
            S  SL  L L  N+L         P  L     L+ + +    ++ +    +       
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283

Query: 315 KLLSTMNISWNSLSGS-----IPSFLSNLTNLVNLNLRQNNLNG----SIPNSITNMRSL 365
           + L  ++++ N L          + L     L +L ++  +          + +   R L
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343

Query: 366 IELQLGGNQ--------LSGTIPMMPPRLQIALNLSSNLF--EG--PIPTTFARLNGLEV 413
           +ELQ+  N+        L   +      L++ L L+           +  T    + L  
Sbjct: 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRV-LWLADCDVSDSSCSSLAATLLANHSLRE 402

Query: 414 LDLSNNRFSGEIPQLLAQM-----PTLTQLLLTNNQLS 446
           LDLSNN         L +        L QL+L +   S
Sbjct: 403 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 74.6 bits (184), Expect = 4e-14
 Identities = 63/383 (16%), Positives = 114/383 (29%), Gaps = 97/383 (25%)

Query: 102 RNLTLIDLSANNLSGSVPDRIGE-LSKLEVLILSANNLDGRLPTSLASITTLSRFAANQN 160
            ++  +D+    LS +    +   L + +V+ L    L       ++S         N  
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-----LRVNPA 57

Query: 161 KFSGSVPGGITRFLRNLDLSYNKL--LGVIPI-DLLSHPN--LQTIDLSVNML--EG--- 210
                        L  L+L  N+L  +GV  +   L  P+  +Q + L    L   G   
Sbjct: 58  -------------LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104

Query: 211 ---SLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLE----KLTYLELDNNSFTGMIPQQL 263
              +L     P L  L L  NLL           L     +L  L+L+  S +    + L
Sbjct: 105 LSSTLRTL--PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162

Query: 264 GS----CRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLST 319
            S          L ++ N++N +    L     L+    QL  L                
Sbjct: 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQ--GLKDSPCQLEAL---------------- 204

Query: 320 MNISWNSLS----GSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNM-----RSLIELQL 370
             +    ++      +   +++  +L  L L  N L       +          L  L +
Sbjct: 205 -KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263

Query: 371 GGNQLS--GTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQL 428
               ++  G          +   L +                L+ L L+ N    E  +L
Sbjct: 264 WECGITAKGCG-------DLCRVLRAK-------------ESLKELSLAGNELGDEGARL 303

Query: 429 LAQM-----PTLTQLLLTNNQLS 446
           L +        L  L + +   +
Sbjct: 304 LCETLLEPGCQLESLWVKSCSFT 326

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 64.2 bits (157), Expect = 8e-11
 Identities = 53/270 (19%), Positives = 89/270 (32%), Gaps = 40/270 (14%)

Query: 216 MSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGM----IPQQLGSCRSLTL 271
           MS ++  L +    L     +     L++   + LD+   T      I   L    +L  
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 272 LNLAQNELNGS----LPIQLGSLGI-LQVMNLQLNKLSGE----IPSQFSQLKLLSTMNI 322
           LNL  NEL       +   L +    +Q ++LQ   L+G     + S    L  L  +++
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 323 SWNSLSGS-----IPSFLSNLTNLVNLNLRQNNLN----GSIPNSITNMRSLIELQLGGN 373
           S N L  +         L     L  L L   +L+      + + +       EL +  N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 374 Q--------LSGTIPMMPPRLQIALNLSSNLF--EG--PIPTTFARLNGLEVLDLSNNRF 421
                    L   +   P +L+  L L S     +    +    A    L  L L +N+ 
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEA-LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

Query: 422 SGE-----IPQLLAQMPTLTQLLLTNNQLS 446
                    P LL     L  L +    ++
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGIT 269

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 90.6 bits (224), Expect = 7e-19
 Identities = 77/515 (14%), Positives = 157/515 (30%), Gaps = 91/515 (17%)

Query: 80  LEELVLSGNAFHGEIPK--GIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANN 137
           + E +         I +      +      +L   +++ +V     EL+ ++ +I + ++
Sbjct: 1   MGETITVST----PIKQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD 54

Query: 138 LDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPN 197
                      I ++       N             +  L L+ NKL  + P+  L   N
Sbjct: 55  -----------IKSVQGIQYLPN-------------VTKLFLNGNKLTDIKPLTNL--KN 88

Query: 198 LQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTG 257
           L  + L  N ++     ++S                        L+KL  L L++N  + 
Sbjct: 89  LGWLFLDENKIK-----DLSS--------------------LKDLKKLKSLSLEHNGISD 123

Query: 258 MIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLL 317
           +    L     L  L L  N++       L  L  L  ++L+ N++S +I    + L  L
Sbjct: 124 ING--LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVP-LAGLTKL 177

Query: 318 STMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSG 377
             + +S N +S  +   L+ L NL  L L          N  +N+     ++     L  
Sbjct: 178 QNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 235

Query: 378 TIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQ 437
              +         N+  +L E     +F     + +   +  RF G + Q L ++ T   
Sbjct: 236 PEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGK-AKARFHGRVTQPLKEVYT--- 291

Query: 438 LLLTNNQLSGVVPKFSKWVSVDTTGNLKLINVTAPDTSPEKRRKSVVVPIVIALAAAILA 497
                             VS D  G +    V A       +  +    +          
Sbjct: 292 ------------------VSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNG 333

Query: 498 VGVVSIFVLSISRRFYRVKDEHLQLGEDISSPQVIQGNLLTGNGIHRSNIDFTKAMEAVA 557
               +     +S   + +         + +         + GN           +++   
Sbjct: 334 GHEWNFNTDYMSGNDFTLYAVFKAETTEKTVNLTRYVKYIRGNAGIYKLPREDNSLKQG- 392

Query: 558 NPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDK 592
             L        +   +A     + Y +K + W+  
Sbjct: 393 -TLASHRCKALTVDREARNGGKLWYRLKNIGWTKA 426

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 84.4 bits (208), Expect = 5e-17
 Identities = 51/274 (18%), Positives = 94/274 (34%), Gaps = 43/274 (15%)

Query: 10  LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQ-FDELVSLKSLNLSKNKFNG 68
               N  K  +    T N    ++ +  +++++    ++Q    L ++  L L+ NK   
Sbjct: 23  TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLNGNKLTD 79

Query: 69  FLPINLGKTKALEELVLSGNAFHGEIPK--GIADYRNLTLIDLSANNLSGSVPDRIGELS 126
             P  L   K L  L L  N    +I     + D + L  + L  N +S  +   +  L 
Sbjct: 80  IKP--LTNLKNLGWLFLDEN----KIKDLSSLKDLKKLKSLSLEHNGIS-DING-LVHLP 131

Query: 127 KLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLG 186
           +LE L L  N            IT ++  +                 L  L L  N++  
Sbjct: 132 QLESLYLGNNK-----------ITDITVLSRLTK-------------LDTLSLEDNQISD 167

Query: 187 VIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLT 246
           ++P+  L    LQ + LS N +          NL  L L +       P    ++L    
Sbjct: 168 IVPLAGL--TKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ-ECLNKPINHQSNLVVPN 224

Query: 247 YLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELN 280
            ++  + S   + P+ +         N+  +   
Sbjct: 225 TVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.8 bits (196), Expect = 1e-15
 Identities = 51/316 (16%), Positives = 99/316 (31%), Gaps = 41/316 (12%)

Query: 50  FDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDL 109
            D        NL K        +   +  ++++++ + +     + +GI    N+T + L
Sbjct: 17  DDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFL 72

Query: 110 SANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGG 169
           + N L+   P  +  L  L  L L  N            I  LS     +          
Sbjct: 73  NGNKLTDIKP--LTNLKNLGWLFLDENK-----------IKDLSSLKDLKK--------- 110

Query: 170 ITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNL 229
               L++L L +N +  +  +  L  P L+++ L  N +      +    L  L L  N 
Sbjct: 111 ----LKSLSLEHNGISDINGLVHL--PQLESLYLGNNKITDITVLSRLTKLDTLSLEDN- 163

Query: 230 LIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGS 289
            I +I       L KL  L L  N  + +    L   ++L +L L   E          +
Sbjct: 164 QISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSN 219

Query: 290 LGILQVMNLQLNKLSG----EIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLN 345
           L +   +      L           + +  +   +    N +S      ++        +
Sbjct: 220 LVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFH 279

Query: 346 LRQNNLNGSIPNSITN 361
            R       +     +
Sbjct: 280 GRVTQPLKEVYTVSYD 295

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.9 bits (186), Expect = 3e-14
 Identities = 46/249 (18%), Positives = 85/249 (34%), Gaps = 38/249 (15%)

Query: 3   SCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLS 62
           +   ++ +  +  + +++ S+        +  L  + N L  +I      L +L  L L 
Sbjct: 38  TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-DIK-PLTNLKNLGWLFLD 95

Query: 63  KNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRI 122
           +NK       +L   K L+ L L  N    +I  G+     L  + L  N +  +    +
Sbjct: 96  ENKIKDL--SSLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKI--TDITVL 149

Query: 123 GELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYN 182
             L+KL+ L L  N            I+ +   A                 L+NL LS N
Sbjct: 150 SRLTKLDTLSLEDNQ-----------ISDIVPLAGLTK-------------LQNLYLSKN 185

Query: 183 KLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS----PNLVRLRLGTNLLIGEIPSAT 238
            +  +  +  L   NL  ++L           + S    PN V+   G+ +    I    
Sbjct: 186 HISDLRALAGL--KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG 243

Query: 239 FTSLEKLTY 247
                 + +
Sbjct: 244 DYEKPNVKW 252

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 84.8 bits (210), Expect = 4e-18
 Identities = 55/219 (25%), Positives = 87/219 (39%), Gaps = 38/219 (17%)

Query: 235 PSATFTSLEKLTYLELDNNSFTGM---IPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLG 291
           P    + +     +  D  + T +   +P      +  T+L+L++N L       L    
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTALPPDLP------KDTTILHLSENLLYTFSLATLMPYT 55

Query: 292 ILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNL 351
            L  +NL   +L+ ++      L +L T+++S N L  S+P     L  L  L++  N L
Sbjct: 56  RLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112

Query: 352 NGSIPNSI-TNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNG 410
             S+P      +  L EL L GN+L  T+P                     P        
Sbjct: 113 T-SLPLGALRGLGELQELYLKGNELK-TLP---------------------PGLLTPTPK 149

Query: 411 LEVLDLSNNRFSGEIPQ-LLAQMPTLTQLLLTNNQLSGV 448
           LE L L+NN  + E+P  LL  +  L  LLL  N L  +
Sbjct: 150 LEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTI 187

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 80.9 bits (200), Expect = 8e-17
 Identities = 51/210 (24%), Positives = 79/210 (37%), Gaps = 29/210 (13%)

Query: 165 SVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLR 224
           ++P  + +    L LS N L       L+ +  L  ++L    L         P L  L 
Sbjct: 24  ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83

Query: 225 LGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLP 284
           L  N L   +P     +L  LT L++  N  T +    L     L  L L  NEL  +LP
Sbjct: 84  LSHNQL-QSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLP 140

Query: 285 IQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFL-SNLTNLVN 343
                                  P   +    L  ++++ N+L+  +P+ L + L NL  
Sbjct: 141 -----------------------PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDT 176

Query: 344 LNLRQNNLNGSIPNSITNMRSLIELQLGGN 373
           L L++N+L  +IP        L    L GN
Sbjct: 177 LLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 51/204 (25%), Positives = 81/204 (39%), Gaps = 16/204 (7%)

Query: 80  LEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLD 139
             E+          +P  +   ++ T++ LS N L       +   ++L  L L    L 
Sbjct: 12  HLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL- 67

Query: 140 GRLPTSLASITTLSRFAANQNKFSGSVPGGITRF--LRNLDLSYNKLLGVIPIDLLSH-P 196
            +L     ++  L     + N+   S+P        L  LD+S+N+ L  +P+  L    
Sbjct: 68  TKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLG 124

Query: 197 NLQTIDLSVNMLEGSLPQNM---SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNN 253
            LQ + L  N L+ +LP  +   +P L +L L  N L  E+P+     LE L  L L  N
Sbjct: 125 ELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQEN 182

Query: 254 SFTGMIPQQLGSCRSLTLLNLAQN 277
           S    IP+       L    L  N
Sbjct: 183 SLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 55/204 (26%), Positives = 74/204 (36%), Gaps = 33/204 (16%)

Query: 54  VSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANN 113
                L+LS+N    F    L     L +L L       ++         L  +DLS N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GTLPVLGTLDLSHNQ 88

Query: 114 LSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRF 173
           L  S+P     L  L VL +S N            +T+L   A       G         
Sbjct: 89  LQ-SLPLLGQTLPALTVLDVSFNR-----------LTSLPLGA-----LRGLGE------ 125

Query: 174 LRNLDLSYNKLLGVIPIDLLSH-PNLQTIDLSVNMLEGSLPQNMS---PNLVRLRLGTNL 229
           L+ L L  N+L   +P  LL+  P L+ + L+ N L   LP  +     NL  L L  N 
Sbjct: 126 LQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS 183

Query: 230 LIGEIPSATFTSLEKLTYLELDNN 253
           L   IP   F S   L +  L  N
Sbjct: 184 LYT-IPKGFFGSH-LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 7/132 (5%)

Query: 10  LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGF 69
           L  LN  + EL  L        L  LD S N L  ++ L    L +L  L++S N+    
Sbjct: 57  LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-S 114

Query: 70  LPINL-GKTKALEELVLSGNAFHGEIPKGIADY-RNLTLIDLSANNLSGSVPDRI-GELS 126
           LP+        L+EL L GN     +P G+      L  + L+ NNL+  +P  +   L 
Sbjct: 115 LPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLE 172

Query: 127 KLEVLILSANNL 138
            L+ L+L  N+L
Sbjct: 173 NLDTLLLQENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 32/113 (28%), Positives = 44/113 (38%), Gaps = 11/113 (9%)

Query: 6   GIDGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQ---FDELVSLKSLN 60
            +  L +L+ S N L SLP     G   L+ L    N L     L          L+ L+
Sbjct: 98  TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK---TLPPGLLTPTPKLEKLS 154

Query: 61  LSKNKFNGFLPINL-GKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSAN 112
           L+ N     LP  L    + L+ L+L  N+ +  IPKG      L    L  N
Sbjct: 155 LANNNLTE-LPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 364 SLIELQLGGNQLSGTIPM-MPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFS 422
           S +E+      L+  +P  +P    I L+LS NL       T      L  L+L     +
Sbjct: 11  SHLEVNCDKRNLT-ALPPDLPKDTTI-LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 423 GEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSK 454
            ++  +   +P L  L L++NQL  +      
Sbjct: 69  -KLQ-VDGTLPVLGTLDLSHNQLQSLPLLGQT 98

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 84.7 bits (210), Expect = 5e-18
 Identities = 59/317 (18%), Positives = 108/317 (34%), Gaps = 43/317 (13%)

Query: 10  LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGF 69
              +   K+ +    T     G+  L      +     +Q   L +L  L L  N+    
Sbjct: 21  AIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKDNQITDL 78

Query: 70  LPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLE 129
            P  L     + EL LSGN    +    IA  +++  +DL++  ++   P  +  LS L+
Sbjct: 79  AP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQ 132

Query: 130 VLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIP 189
           VL L  N +     T+++ +  L+                    L+ L +   ++  + P
Sbjct: 133 VLYLDLNQI-----TNISPLAGLTN-------------------LQYLSIGNAQVSDLTP 168

Query: 190 IDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLE 249
           +  L    L T+    N +    P    PNL+ + L  N +    P     +   L  + 
Sbjct: 169 LANL--SKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP---LANTSNLFIVT 223

Query: 250 LDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSL-PIQLGSLGILQVMNL--QLNKLSGE 306
           L N + T           +L + N+ +      + P  +   G     NL   L      
Sbjct: 224 LTNQTITNQPVFYNN---NLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINN 280

Query: 307 IPSQFSQLKLLSTMNIS 323
           +   F+Q        + 
Sbjct: 281 VSYTFNQSVTFKNTTVP 297

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 84.7 bits (210), Expect = 5e-18
 Identities = 60/302 (19%), Positives = 116/302 (38%), Gaps = 41/302 (13%)

Query: 51  DELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLS 110
             L +   +   K+       +       +  L   G      I  G+    NL  ++L 
Sbjct: 16  PALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELK 71

Query: 111 ANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGI 170
            N ++   P  +  L+K+  L LS N            +  +S  A  Q+          
Sbjct: 72  DNQITDLAP--LKNLTKITELELSGNP-----------LKNVSAIAGLQS---------- 108

Query: 171 TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLL 230
              ++ LDL+  ++  V P+  L   NLQ + L +N +    P     NL  L +G    
Sbjct: 109 ---IKTLDLTSTQITDVTPLAGL--SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA-Q 162

Query: 231 IGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSL 290
           + ++      +L KLT L+ D+N  + + P  L S  +L  ++L  N+++   P  L + 
Sbjct: 163 VSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANT 216

Query: 291 GILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNN 350
             L ++ L    ++ +     + L + +   +   S +   P+ +S+     + NL  N 
Sbjct: 217 SNLFIVTLTNQTITNQPVFYNNNLVVPNV--VKGPSGAPIAPATISDNGTYASPNLTWNL 274

Query: 351 LN 352
            +
Sbjct: 275 TS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 52/279 (18%), Positives = 97/279 (34%), Gaps = 39/279 (13%)

Query: 97  GIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFA 156
                 N   I    +N++ +V     +L  +  L                 +TT+    
Sbjct: 14  PDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTG-----------VTTIEGVQ 60

Query: 157 ANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNM 216
              N             L  L+L  N++  + P+  L    +  ++LS N L+       
Sbjct: 61  YLNN-------------LIGLELKDNQITDLAPLKNL--TKITELELSGNPLKNVSAIAG 105

Query: 217 SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQ 276
             ++  L L +   I ++       L  L  L LD N  T + P  L    +L  L++  
Sbjct: 106 LQSIKTLDLTSTQ-ITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGN 160

Query: 277 NELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLS 336
            +++   P  L +L  L  +    NK+S +I    + L  L  +++  N +S   P  L+
Sbjct: 161 AQVSDLTP--LANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP--LA 214

Query: 337 NLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQL 375
           N +NL  + L    +         N+     ++      
Sbjct: 215 NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 80.1 bits (198), Expect = 2e-16
 Identities = 51/272 (18%), Positives = 99/272 (36%), Gaps = 39/272 (14%)

Query: 174 LRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGE 233
              +    + +   +    L    + T+      +          NL+ L L  N  I +
Sbjct: 21  AIKIAAGKSNVTDTVTQADL--DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ-ITD 77

Query: 234 IPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGIL 293
           +      +L K+T LEL  N    +    +   +S+  L+L   ++    P  L  L  L
Sbjct: 78  LAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--LAGLSNL 131

Query: 294 QVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNG 353
           QV+ L LN+++  I    + L  L  ++I    +S  + + L+NL+ L  L    N ++ 
Sbjct: 132 QVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVS-DL-TPLANLSKLTTLKADDNKIS- 186

Query: 354 SIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEV 413
            I   + ++ +LIE+ L  NQ+S   P                         A  + L +
Sbjct: 187 DISP-LASLPNLIEVHLKNNQISDVSP------------------------LANTSNLFI 221

Query: 414 LDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQL 445
           + L+N   + +       +     +   +   
Sbjct: 222 VTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.3 bits (196), Expect = 4e-16
 Identities = 50/250 (20%), Positives = 91/250 (36%), Gaps = 13/250 (5%)

Query: 5   GGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKN 64
             +DG+  L+     + ++        L  L+   N +     L    L  +  L LS N
Sbjct: 38  ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPL--KNLTKITELELSGN 95

Query: 65  KFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGE 124
                    +   ++++ L L+        P  +A   NL ++ L  N ++   P  +  
Sbjct: 96  PLKNV--SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAG 149

Query: 125 LSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKL 184
           L+ L+ L +    +     T LA+++ L+   A+ NK S   P      L  + L  N++
Sbjct: 150 LTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQI 207

Query: 185 LGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEK 244
             V P+      NL  + L+   +  + P   + NLV   +        I  AT +    
Sbjct: 208 SDVSPLANT--SNLFIVTLTNQTIT-NQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGT 264

Query: 245 LTYLELDNNS 254
                L  N 
Sbjct: 265 YASPNLTWNL 274

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 8/117 (6%)

Query: 335 LSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPM-MPPRLQIALNLS 393
              L N + +   ++N+  ++     ++  +  L   G  ++    +     L   L L 
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQYLNNLIG-LELK 71

Query: 394 SNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVP 450
            N      P     L  +  L+LS N         +A + ++  L LT+ Q++ V P
Sbjct: 72  DNQITDLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP 124

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 82.0 bits (203), Expect = 1e-17
 Identities = 38/216 (17%), Positives = 77/216 (35%), Gaps = 18/216 (8%)

Query: 165 SVPGGITRFLRNLDLSYNKLLGVIPIDLLSH-PNLQTIDLSVNMLEGSLPQNM---SPNL 220
            +P  +    + L L    L   IP    S+ PN+  I +S+++    L  +       +
Sbjct: 25  RIPS-LPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV 82

Query: 221 VRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQ--LGSCRSLTLLNLAQNE 278
             + +     +  I       L  L +L + N     M P    + S     +L +  N 
Sbjct: 83  THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNP 141

Query: 279 LNGSLPIQL--GSLGILQVMNLQLNKLSGEIPSQ-FSQLKLLSTMNISWNSLSGSIP--S 333
              S+P+    G       + L  N  +  +    F+  KL +        L+  I   +
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLT-VIDKDA 199

Query: 334 FLSNLTNLVNLNLRQNNLNGSIPNSI-TNMRSLIEL 368
           F    +    L++ Q ++  ++P+    +++ LI  
Sbjct: 200 FGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 77.0 bits (190), Expect = 8e-16
 Identities = 47/255 (18%), Positives = 85/255 (33%), Gaps = 56/255 (21%)

Query: 196 PNLQTIDLSVNMLEGSLPQNM---SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDN 252
           P+ QT+ L    L  ++P +     PN+ R+ +  ++ + ++ S +F +L K+T++E+ N
Sbjct: 31  PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 253 NSFTGMIPQQ-LGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQF 311
                 I    L     L  L +    L    P                        ++ 
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDL----------------------TKV 126

Query: 312 SQLKLLSTMNISWNSLSGSIPS-FLSNLTN-LVNLNLRQNNLNGSIPNSITNMRSLIELQ 369
               +   + I+ N    SIP      L N  + L L  N    S+     N   L  + 
Sbjct: 127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVY 185

Query: 370 LGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARL-NGLEVLDLSNNRFSGEIPQL 428
           L  N+    I                         F  + +G  +LD+S    +  +P  
Sbjct: 186 LNKNKYLTVID---------------------KDAFGGVYSGPSLLDVSQTSVT-ALPS- 222

Query: 429 LAQMPTLTQLLLTNN 443
              +  L +L+  N 
Sbjct: 223 -KGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 32/227 (14%), Positives = 67/227 (29%), Gaps = 29/227 (12%)

Query: 55  SLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGI-ADYRNLTLIDLSANN 113
           S ++L L +                +  + +S +    ++      +   +T I++    
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 114 LSGSVPDRI-GELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITR 172
               +      EL  L+ L +    L          +T +                  T 
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGL-----KMFPDLTKVYS----------------TD 130

Query: 173 FLRNLDLSYNKLLGVIPIDLLSH--PNLQTIDLSVNMLEGSLPQNM--SPNLVRLRLGTN 228
               L+++ N  +  IP++          T+ L  N    S+         L  + L  N
Sbjct: 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKN 189

Query: 229 LLIGEIPSATFTSL-EKLTYLELDNNSFTGMIPQQLGSCRSLTLLNL 274
             +  I    F  +    + L++   S T +  + L   + L   N 
Sbjct: 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 23/151 (15%), Positives = 52/151 (34%), Gaps = 27/151 (17%)

Query: 317 LSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLS 376
                ++   +   IPS   +   L    L + +L     ++ +N+ ++  + +  +   
Sbjct: 13  EEDFRVTCKDIQ-RIPSLPPSTQTL---KLIETHLRTIPSHAFSNLPNISRIYVSIDVTL 68

Query: 377 GTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIP-QLLAQMPTL 435
             +                        +F  L+ +  +++ N R    I    L ++P L
Sbjct: 69  QQLE---------------------SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107

Query: 436 TQLLLTNNQLSGVVPKFSKWVSVDTTGNLKL 466
             L + N  L  + P  +K  S D    L++
Sbjct: 108 KFLGIFNTGLK-MFPDLTKVYSTDIFFILEI 137

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 11/131 (8%)

Query: 10  LKLLNFSKNELVSLPTFNGFAGLE---VLDFSSNNLNGNINLQ-FDELVS-LKSLNLSKN 64
           LK L      L   P        +   +L+ + N    +I +  F  L +   +L L  N
Sbjct: 107 LKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166

Query: 65  KFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIAD--YRNLTLIDLSANNLSGSVPDRI 122
            F   +         L+ + L+ N +   I K      Y   +L+D+S  +++ ++P + 
Sbjct: 167 GFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKG 224

Query: 123 GELSKLEVLIL 133
             L  L+ LI 
Sbjct: 225 --LEHLKELIA 233

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 81.2 bits (201), Expect = 4e-17
 Identities = 60/227 (26%), Positives = 94/227 (41%), Gaps = 32/227 (14%)

Query: 197 NLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFT 256
           N  ++D S   L  ++P N+  +  +L L +N  +  +PS  F  L KL  L L++N   
Sbjct: 17  NKNSVDCSSKKLT-AIPSNIPADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQ 74

Query: 257 GMIPQQLGSCRSLTLLNLAQNELNGSLPIQL-GSLGILQVMNLQLNKLSGEIPSQFSQLK 315
            +        ++L  L +  N+L  +LPI +   L  L  + L  N+L    P  F  L 
Sbjct: 75  TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133

Query: 316 LLSTMNISWNSLSGSIPS--FLSNLTNLVNLNLRQNNLNGSIPNSI-TNMRSLIELQLGG 372
            L+ +++ +N L  S+P   F   LT+L  L L  N L   +P      +  L  L+L  
Sbjct: 134 KLTYLSLGYNELQ-SLPKGVF-DKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDN 190

Query: 373 NQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNN 419
           NQL   +P                        F  L  L++L L  N
Sbjct: 191 NQLK-RVP---------------------EGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 63/259 (24%), Positives = 98/259 (37%), Gaps = 60/259 (23%)

Query: 4   CGGI----DGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSL 59
            GG+    +    ++ S  +L ++P+ N  A  + LD  SN L+   +  F  L  L+ L
Sbjct: 8   DGGVCSCNNNKNSVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLL 66

Query: 60  NLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVP 119
            L+ NK                   L    F           +NL  + ++ N L  ++P
Sbjct: 67  YLNDNKLQ----------------TLPAGIFKE--------LKNLETLWVTDNKLQ-ALP 101

Query: 120 DRI-GELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLD 178
             +  +L  L  L L  N L      SL                   V   +T+ L  L 
Sbjct: 102 IGVFDQLVNLAELRLDRNQL-----KSL----------------PPRVFDSLTK-LTYLS 139

Query: 179 LSYNKLLGVIPIDLLSH-PNLQTIDLSVNMLEGSLPQNM---SPNLVRLRLGTNLLIGEI 234
           L YN+L   +P  +     +L+ + L  N L+  +P+        L  L+L  N L   +
Sbjct: 140 LGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RV 196

Query: 235 PSATFTSLEKLTYLELDNN 253
           P   F SLEKL  L+L  N
Sbjct: 197 PEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 66.5 bits (163), Expect = 4e-12
 Identities = 56/194 (28%), Positives = 82/194 (42%), Gaps = 19/194 (9%)

Query: 94  IPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSAN---NLDGRLPTSLASIT 150
           IP  I    +   +DL +N LS         L+KL +L L+ N    L   +   L ++ 
Sbjct: 31  IPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88

Query: 151 TLSRFAANQNKFSGSVPGGITRFLRN---LDLSYNKLLGVIPIDLLSH-PNLQTIDLSVN 206
           TL       NK   ++P G+   L N   L L  N+L   +P  +      L  + L  N
Sbjct: 89  TLW---VTDNKLQ-ALPIGVFDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYN 143

Query: 207 MLEGSLPQNM---SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQL 263
            L+ SLP+ +     +L  LRL  N L   +P   F  L +L  L+LDNN    +     
Sbjct: 144 ELQ-SLPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201

Query: 264 GSCRSLTLLNLAQN 277
            S   L +L L +N
Sbjct: 202 DSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 30/160 (18%)

Query: 293 LQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPS--FLSNLTNLVNLNLRQNN 350
            + ++LQ NKLS      F +L  L  + ++ N L  ++P+  F   L NL  L +  N 
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIF-KELKNLETLWVTDNK 96

Query: 351 LNGSIPNSI-TNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLN 409
           L  ++P  +   + +L EL+L  NQL  ++P                     P  F  L 
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLK-SLP---------------------PRVFDSLT 133

Query: 410 GLEVLDLSNNRFSGEIPQ-LLAQMPTLTQLLLTNNQLSGV 448
            L  L L  N     +P+ +  ++ +L +L L NNQL  V
Sbjct: 134 KLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRV 172

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 43/138 (31%), Positives = 60/138 (43%), Gaps = 14/138 (10%)

Query: 10  LKLLNFSKNELVSLPT--FNGFAGLEVLDFSSNNLNGNINLQ---FDELVSLKSLNLSKN 64
           L+ L  + N+L +LP   F+    L  L    N L    +L    FD L  L  L+L  N
Sbjct: 87  LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK---SLPPRVFDSLTKLTYLSLGYN 143

Query: 65  KFNGFLPINL-GKTKALEELVLSGNAFHGEIPKGIADY-RNLTLIDLSANNLSGSVPDRI 122
           +    LP  +  K  +L+EL L  N     +P+G  D    L  + L  N L   VP+  
Sbjct: 144 ELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGA 200

Query: 123 -GELSKLEVLILSANNLD 139
              L KL++L L  N  D
Sbjct: 201 FDSLEKLKMLQLQENPWD 218

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 50/240 (20%), Positives = 90/240 (37%), Gaps = 28/240 (11%)

Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYS 661
           F KE++V+  L + NV+  +  +          EY   GTL  ++   +++   W+ R S
Sbjct: 54  FLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKS-MDSQYPWSQRVS 112

Query: 662 IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID---------- 711
            A  +A G+A+LH   S  I+  DL++ N  ++  K   + D  L +++           
Sbjct: 113 FAKDIASGMAYLH---SMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLR 169

Query: 712 --PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELA 769
                      TV G+  ++ PE           +V+SFG++L E++    A        
Sbjct: 170 SLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNA-------- 221

Query: 770 KWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
                        D  L+           +   +   + V C  + PE RP    +   L
Sbjct: 222 -DPDYLPRTM---DFGLNVRGFLDRYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWL 277

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 81.0 bits (200), Expect = 2e-16
 Identities = 41/167 (24%), Positives = 65/167 (38%), Gaps = 11/167 (6%)

Query: 165 SVPGGITRFLRNLDLSYNKLLGVIPIDLLSH-PNLQTIDLSVNMLEGSLPQNM---SPNL 220
           +VP  +  +   LDLS+N L  +      +   NL ++ LS N L   +        PNL
Sbjct: 32  NVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNL 90

Query: 221 VRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELN 280
             L L +N L   +    F+ L+ L  L L NN    +          L  L L+QN+++
Sbjct: 91  RYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149

Query: 281 GSLP----IQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNIS 323
              P         L  L +++L  NKL     +   +L       + 
Sbjct: 150 -RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 77.6 bits (191), Expect = 2e-15
 Identities = 42/186 (22%), Positives = 71/186 (38%), Gaps = 10/186 (5%)

Query: 197 NLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFT 256
               +  S   L  ++PQ++      L L  N L       T T L  L  L L +N   
Sbjct: 19  ASNILSCSKQQLP-NVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN 77

Query: 257 GMIPQQLGSCRSLTLLNLAQNELNGSLPIQ-LGSLGILQVMNLQLNKLSGEIPSQFSQLK 315
            +  +      +L  L+L+ N L+ +L       L  L+V+ L  N +     + F  + 
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA 136

Query: 316 LLSTMNISWNSLSGSIP----SFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIE--LQ 369
            L  + +S N +S   P       + L  L+ L+L  N L       +  + + ++  L 
Sbjct: 137 QLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

Query: 370 LGGNQL 375
           L  N L
Sbjct: 196 LHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.7 bits (155), Expect = 8e-11
 Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 12/154 (7%)

Query: 10  LKLLNFSKNELVSLP---TFNGFAGLEVLDFSSNNLNGNINLQ-FDELVSLKSLNLSKNK 65
             LL+ S N L  L    T      L  L  S N+LN  I+ + F  + +L+ L+LS N 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH 99

Query: 66  FNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADY-RNLTLIDLSANNLSGSVPDRI-- 122
            +          +ALE L+L  N     + +   +    L  + LS N +S   P  +  
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIK 157

Query: 123 --GELSKLEVLILSANNLDGRLPTSLASITTLSR 154
              +L KL +L LS+N L     T L  +    +
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 35/134 (26%), Positives = 49/134 (36%), Gaps = 7/134 (5%)

Query: 10  LKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFN 67
           L  L  S N L  +    F     L  LD SSN+L+      F +L +L+ L L  N   
Sbjct: 66  LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV 125

Query: 68  GFLPINLGKTKALEELVLSGNAFHGEIPKGI----ADYRNLTLIDLSANNLSGSVPDRIG 123
                       L++L LS N      P  +         L L+DLS+N L       + 
Sbjct: 126 VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ 184

Query: 124 ELSKLEVLILSANN 137
           +L       L  +N
Sbjct: 185 KLPAWVKNGLYLHN 198

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.5 bits (189), Expect = 5e-16
 Identities = 34/230 (14%), Positives = 64/230 (27%), Gaps = 57/230 (24%)

Query: 219 NLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNE 278
             +   LG +       + T   +  LTY+ L N + T +    +    ++  L +    
Sbjct: 24  AYLNGLLGQS----STANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNI- 76

Query: 279 LNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNL 338
                                    +       S L  L  + I    ++      LS L
Sbjct: 77  --------------------HATNYNP-----ISGLSNLERLRIMGKDVTSDKIPNLSGL 111

Query: 339 TNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFE 398
           T+L  L++  +  + SI   I  +  +  + L  N     I                   
Sbjct: 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI------------------- 152

Query: 399 GPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGV 448
                    L  L+ L++  +         +   P L QL   +  + G 
Sbjct: 153 ----MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.4 bits (173), Expect = 5e-14
 Identities = 25/162 (15%), Positives = 54/162 (33%), Gaps = 5/162 (3%)

Query: 3   SCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLS 62
           +   ++ L  +  +   +  L        ++ L  ++ +      +    L +L+ L + 
Sbjct: 39  TEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPI--SGLSNLERLRIM 96

Query: 63  KNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRI 122
                     NL    +L  L +S +A    I   I     +  IDLS N     +   +
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-L 155

Query: 123 GELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSG 164
             L +L+ L +  + +       +     L++  A      G
Sbjct: 156 KTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 20/179 (11%), Positives = 63/179 (35%), Gaps = 9/179 (5%)

Query: 30  AGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNA 89
           +  +         +   N+   ++ SL  + L+           +     +++L ++   
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIH 77

Query: 90  FHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASI 149
                   I+   NL  + +   +++      +  L+ L +L +S +  D  + T + ++
Sbjct: 78  ATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 150 TTLSRFAANQNKFSGSVPG--GITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVN 206
             ++    + N     +     +   L++L++ ++ +     I+    P L  +     
Sbjct: 136 PKVNSIDLSYNGAITDIMPLKTLPE-LKSLNIQFDGVHDYRGIEDF--PKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 30/186 (16%), Positives = 61/186 (32%), Gaps = 32/186 (17%)

Query: 98  IADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAA 157
            A   +LT I L+  N++      I     ++ L ++  +      T+   I+ LS    
Sbjct: 40  EAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHA-----TNYNPISGLSN--- 89

Query: 158 NQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS 217
                           L  L +    +      +L    +L  +D+S +  + S+   ++
Sbjct: 90  ----------------LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 218 --PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLA 275
             P +  + L  N  I +I      +L +L  L +  +         +     L  L   
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAF 189

Query: 276 QNELNG 281
              + G
Sbjct: 190 SQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 7/135 (5%)

Query: 312 SQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLG 371
           S  K      +  +S +    + +++LT    + L   N+   +   I    ++ +L + 
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLT---YITLANINVT-DLTG-IEYAHNIKDLTIN 74

Query: 372 GNQLSGTIPMMP-PRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLA 430
               +   P+     L+  L +             + L  L +LD+S++     I   + 
Sbjct: 75  NIHATNYNPISGLSNLER-LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 431 QMPTLTQLLLTNNQL 445
            +P +  + L+ N  
Sbjct: 134 TLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 18/117 (15%), Positives = 44/117 (37%), Gaps = 7/117 (5%)

Query: 336 SNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMP-PRLQIALNLSS 394
           S     +N  L Q++       +   M SL  + L    ++    +     ++  L +++
Sbjct: 20  STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTGIEYAHNIKD-LTINN 75

Query: 395 NLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPK 451
                  P   + L+ LE L +     + +    L+ + +LT L ++++     +  
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 79.8 bits (196), Expect = 1e-15
 Identities = 45/264 (17%), Positives = 91/264 (34%), Gaps = 32/264 (12%)

Query: 179 LSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSAT 238
           +           D  +   L   +LSV        +  S   ++     N          
Sbjct: 332 VLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL 391

Query: 239 FTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNL 298
             +L+ L Y +     F+ +  + +   R    L+  +++      +       ++V++L
Sbjct: 392 MRALDPLLYEKETLQYFSTL--KAVDPMR-AAYLDDLRSKFLLENSVLKMEYADVRVLHL 448

Query: 299 QLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNS 358
               L+  +     QL L++ +++S N L  ++P  L+ L  L  L    N L  ++   
Sbjct: 449 AHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG- 503

Query: 359 ITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSN 418
           + N+  L EL L  N+L      + P                          L +L+L  
Sbjct: 504 VANLPRLQELLLCNNRLQ-QSAAIQP--------------------LVSCPRLVLLNLQG 542

Query: 419 NRFS---GEIPQLLAQMPTLTQLL 439
           N      G   +L   +P+++ +L
Sbjct: 543 NSLCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 71.3 bits (174), Expect = 5e-13
 Identities = 55/302 (18%), Positives = 94/302 (31%), Gaps = 57/302 (18%)

Query: 173 FLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLI- 231
            L  +D +   +    P       ++   DL    L   LPQ+    +          + 
Sbjct: 274 LLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVL 333

Query: 232 ----GEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQL 287
                E       + E+L   EL     T ++  +L SC+ L  L         ++ + +
Sbjct: 334 LKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM 392

Query: 288 GSLGILQVMNLQLNKLSG---------------------EIPSQFSQLKLLSTMNISWNS 326
            +L  L      L   S                      E      +   +  ++++   
Sbjct: 393 RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD 452

Query: 327 LSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRL 386
           L+  +   L  L  + +L+L  N L  ++P ++  +R L  LQ   N L           
Sbjct: 453 LT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE---------- 499

Query: 387 QIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQL--LAQMPTLTQLLLTNNQ 444
               N+             A L  L+ L L NNR   +   +  L   P L  L L  N 
Sbjct: 500 ----NVDG----------VANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNS 544

Query: 445 LS 446
           L 
Sbjct: 545 LC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.7 bits (149), Expect = 5e-10
 Identities = 37/176 (21%), Positives = 63/176 (35%), Gaps = 28/176 (15%)

Query: 32  LEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFH 91
           L+ L +    L     L+  + +    L+  ++KF     +   +   +  L L+     
Sbjct: 395 LDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL- 453

Query: 92  GEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITT 151
             +   +     +T +DLS N L  ++P  +  L  LEVL  S N L      ++  +  
Sbjct: 454 -TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL-----ENVDGVAN 506

Query: 152 LSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSH-PNLQTIDLSVN 206
           L R                   L+ L L  N+L     I  L   P L  ++L  N
Sbjct: 507 LPR-------------------LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.5 bits (146), Expect = 1e-09
 Identities = 37/197 (18%), Positives = 67/197 (34%), Gaps = 23/197 (11%)

Query: 260 PQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLST 319
            +   +   L    L+  +    L  +L S   LQ +  +         +++  L ++  
Sbjct: 342 CRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPE---------NKWCLLTIILL 391

Query: 320 MN-ISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSI-----PNSITNMRSLIELQLGGN 373
           M  +           + S L  +  +     +   S               +  L L   
Sbjct: 392 MRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK 451

Query: 374 QLSGTIPMMP--PRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQ 431
            L+  +  +     +   L+LS N     +P   A L  LEVL  S+N     +  + A 
Sbjct: 452 DLT-VLCHLEQLLLVTH-LDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVDGV-AN 506

Query: 432 MPTLTQLLLTNNQLSGV 448
           +P L +LLL NN+L   
Sbjct: 507 LPRLQELLLCNNRLQQS 523

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.4 bits (143), Expect = 3e-09
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 5/119 (4%)

Query: 11  KLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFL 70
           ++L+ +  +L  L        +  LD S N L   +      L  L+ L  S N      
Sbjct: 444 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD 502

Query: 71  PINLGKTKALEELVLSGNAFHG-EIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKL 128
              +     L+EL+L  N        + +     L L++L  N+L          L+++
Sbjct: 503 --GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.6 bits (115), Expect = 7e-06
 Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 6/82 (7%)

Query: 10  LKLLNFSKNELVSLPT-FNGFAGLEVLDFSSNNLNGNINLQ-FDELVSLKSLNLSKNKFN 67
           +  L+ S N L +LP        LEVL  S N L    N+     L  L+ L L  N+  
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALE---NVDGVANLPRLQELLLCNNRLQ 521

Query: 68  GFLPI-NLGKTKALEELVLSGN 88
               I  L     L  L L GN
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGN 543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 56/222 (25%), Positives = 88/222 (39%), Gaps = 17/222 (7%)

Query: 159 QNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSP 218
                   P          +L    +   +  + L+  ++  I  + + ++        P
Sbjct: 6   STPIKQIFPDDAFAETIKANLKKKSVTDAVTQNELN--SIDQIIANNSDIKSVQGIQYLP 63

Query: 219 NLVRLRLGTNLL--IGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQ 276
           N+  L LG N L  I          L  LTYL L  N    +         +L  L L +
Sbjct: 64  NVRYLALGGNKLHDIS-----ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118

Query: 277 NELNGSLPIQL-GSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPS-- 333
           N+L  SLP  +   L  L  +NL  N+L       F +L  L+ +++S+N L  S+P   
Sbjct: 119 NQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGV 176

Query: 334 FLSNLTNLVNLNLRQNNLNGSIPNSI-TNMRSLIELQLGGNQ 374
           F   LT L +L L QN L  S+P+ +   + SL  + L  N 
Sbjct: 177 F-DKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 56/221 (25%), Positives = 87/221 (39%), Gaps = 43/221 (19%)

Query: 234 IPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGIL 293
            P   F          L   S T  + Q      S+  +    +++     IQ   L  +
Sbjct: 13  FPDDAFAET---IKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ--YLPNV 65

Query: 294 QVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPS-FLSNLTNLVNLNLRQNNLN 352
           + + L  NKL  +I +   +L  L+ + ++ N L  S+P+     LTNL  L L +N L 
Sbjct: 66  RYLALGGNKLH-DISA-LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ 122

Query: 353 GSIPNSITN-MRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGL 411
            S+P+ + + + +L  L L  NQL      +P  +                  F +L  L
Sbjct: 123 -SLPDGVFDKLTNLTYLNLAHNQLQS----LPKGV------------------FDKLTNL 159

Query: 412 EVLDLSNNRFSGEIPQ----LLAQMPTLTQLLLTNNQLSGV 448
             LDLS N+    +P+     L Q   L  L L  NQL  V
Sbjct: 160 TELDLSYNQLQ-SLPEGVFDKLTQ---LKDLRLYQNQLKSV 196

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 17/175 (9%)

Query: 10  LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQ-FDELVSLKSLNLSKNKFNG 68
           +  +  + +++ S+        +  L    N L+   ++    EL +L  L L+ N+   
Sbjct: 43  IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH---DISALKELTNLTYLILTGNQLQS 99

Query: 69  FLPINLGKTKALEELVLSGNAFHGEIPKGIADY-RNLTLIDLSANNLSGSVPDRI-GELS 126
                  K   L+ELVL  N     +P G+ D   NLT ++L+ N L  S+P  +  +L+
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLT 157

Query: 127 KLEVLILSANNLDGRLPT----SLASITTLSRFAANQNKFSGSVPGGITRFLRNL 177
            L  L LS N L   LP      L  +  L     NQ K   SVP G+   L +L
Sbjct: 158 NLTELDLSYNQL-QSLPEGVFDKLTQLKDLR-LYQNQLK---SVPDGVFDRLTSL 207

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 9/144 (6%)

Query: 1   MQSCGGIDGL---KLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLK 57
           ++S  GI  L   + L    N+L  +        L  L  + N L    N  FD+L +LK
Sbjct: 53  IKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112

Query: 58  SLNLSKNKFNGFLPINL-GKTKALEELVLSGNAFHGEIPKGIADY-RNLTLIDLSANNLS 115
            L L +N+    LP  +  K   L  L L+ N     +PKG+ D   NLT +DLS N L 
Sbjct: 113 ELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ 170

Query: 116 GSVPDRI-GELSKLEVLILSANNL 138
            S+P+ +  +L++L+ L L  N L
Sbjct: 171 -SLPEGVFDKLTQLKDLRLYQNQL 193

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 58/283 (20%), Positives = 109/283 (38%), Gaps = 58/283 (20%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNV--------- 617
           F   +KA     G +Y IK++ ++++        K ++E++ L KL + N+         
Sbjct: 24  FGQVFKAKHRIDGKTYVIKRVKYNNE--------KAEREVKALAKLDHVNIVHYNGCWDG 75

Query: 618 -------MTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGL 670
                   +  +    +   ++  E+  KGTL   +       LD      +   + +G+
Sbjct: 76  FDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGV 135

Query: 671 AFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIP 730
            ++H   S  ++  DL   NIFL   K+ +IGD  L   +    + G  +   G++ Y+ 
Sbjct: 136 DYIH---SKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLK---NDGKRTRSKGTLRYMS 189

Query: 731 PE----YAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL 786
           PE      Y   V    ++Y+ G+IL ELL       + ++    +            I+
Sbjct: 190 PEQISSQDYGKEV----DLYALGLILAELLHVCDTAFETSKFFTDLRDG---------II 236

Query: 787 DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
                +    +  ++L          S  PE RP    +LR L
Sbjct: 237 SDIFDKKEKTLLQKLL----------SKKPEDRPNTSEILRTL 269

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.2 bits (180), Expect = 3e-14
 Identities = 48/247 (19%), Positives = 87/247 (35%), Gaps = 35/247 (14%)

Query: 10  LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGF 69
               N  K  +    T N    ++ +  +++++     +Q+  L ++  L L+ NK    
Sbjct: 26  TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQY--LPNVTKLFLNGNKLTDI 83

Query: 70  LPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLE 129
            P  L   K L  L L  N    ++   + D + L  + L  N +  S  + +  L +LE
Sbjct: 84  KP--LANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGI--SDINGLVHLPQLE 137

Query: 130 VLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIP 189
            L L  N            IT ++  +                 L  L L  N++  ++P
Sbjct: 138 SLYLGNNK-----------ITDITVLSRLTK-------------LDTLSLEDNQISDIVP 173

Query: 190 IDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLE 249
           +  L    LQ + LS N +          NL  L L +       P    ++L     ++
Sbjct: 174 LAGL--TKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ-ECLNKPINHQSNLVVPNTVK 230

Query: 250 LDNNSFT 256
             + S  
Sbjct: 231 NTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.4 bits (178), Expect = 5e-14
 Identities = 47/228 (20%), Positives = 89/228 (39%), Gaps = 15/228 (6%)

Query: 218 PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQN 277
              ++  L    +   +       L  +  +  +N+    +    +    ++T L L  N
Sbjct: 24  AETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN 78

Query: 278 ELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSN 337
           +L    P  L +L  L  + L  NK+  ++ S    LK L ++++  N +S  I + L +
Sbjct: 79  KLTDIKP--LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS-DI-NGLVH 132

Query: 338 LTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLF 397
           L  L +L L  N +  +    ++ +  L  L L  NQ+S  +P+        L LS N  
Sbjct: 133 LPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI 190

Query: 398 EGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQL 445
                   A L  L+VL+L +     +     + +     +  T+  L
Sbjct: 191 SDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 70.1 bits (172), Expect = 4e-13
 Identities = 48/230 (20%), Positives = 87/230 (37%), Gaps = 13/230 (5%)

Query: 146 LASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSV 205
             +     +    +   + +V       +  +  + + +  V  I  L  PN+  + L+ 
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYL--PNVTKLFLNG 77

Query: 206 NMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGS 265
           N L    P     NL  L L  N  + ++ S     L+KL  L L++N  + +    L  
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENK-VKDLSS--LKDLKKLKSLSLEHNGISDING--LVH 132

Query: 266 CRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWN 325
              L  L L  N++       L  L  L  ++L+ N++S +I    + L  L  + +S N
Sbjct: 133 LPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKN 188

Query: 326 SLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQL 375
            +S  +   L+ L NL  L L          N  +N+     ++     L
Sbjct: 189 HIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.7 bits (171), Expect = 5e-13
 Identities = 54/304 (17%), Positives = 109/304 (35%), Gaps = 67/304 (22%)

Query: 51  DELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPK--GIADYRNLTLID 108
           D        NL K        +   +  ++++++ + +    +I    GI    N+T + 
Sbjct: 21  DAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNS----DIKSVQGIQYLPNVTKLF 74

Query: 109 LSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPG 168
           L+ N L+   P  +  L  L  L L  N            +  LS     +         
Sbjct: 75  LNGNKLTDIKP--LANLKNLGWLFLDENK-----------VKDLSSLKDLKK-------- 113

Query: 169 GITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTN 228
                L++L L +N +  +  +  L  P L+++ L  N +      +++           
Sbjct: 114 -----LKSLSLEHNGISDINGLVHL--PQLESLYLGNNKIT-----DITV---------- 151

Query: 229 LLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLG 288
                      + L KL  L L++N  + ++P  L     L  L L++N ++      L 
Sbjct: 152 ----------LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LA 197

Query: 289 SLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQ 348
            L  L V+ L   +   +  +  S L + +T+  +  SL    P  +S+  +    N++ 
Sbjct: 198 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKW 255

Query: 349 NNLN 352
           +   
Sbjct: 256 HLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 36/159 (22%), Positives = 68/159 (42%), Gaps = 12/159 (7%)

Query: 293 LQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLN 352
               NL+   ++  +    ++L  +  +  + + +  S+   +  L N+  L L  N L 
Sbjct: 26  TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT 81

Query: 353 GSIPNSITNMRSLIELQLGGNQLSGTIPMMP-PRLQIALNLSSNLFEGPIPTTFARLNGL 411
             I   + N+++L  L L  N++     +    +L+  L+L  N            L  L
Sbjct: 82  -DIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKS-LSLEHNGISDING--LVHLPQL 136

Query: 412 EVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVP 450
           E L L NN+ +      L+++  L  L L +NQ+S +VP
Sbjct: 137 ESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP 173

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 8/115 (6%)

Query: 333 SFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPM-MPPRLQIALN 391
                    +  NL++ ++  ++      + S+ ++    + +     +   P +   L 
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPNVTK-LF 74

Query: 392 LSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLS 446
           L+ N      P   A L  L  L L  N+   ++   L  +  L  L L +N +S
Sbjct: 75  LNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS 125

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 71.1 bits (175), Expect = 1e-13
 Identities = 45/190 (23%), Positives = 81/190 (42%), Gaps = 24/190 (12%)

Query: 578 SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEY 636
           S     +K L    ++ + G  H+  +E+E+   L + N++  L       +  YL  EY
Sbjct: 33  SKFILALKVLF-KAQLEKAGVEHQLRREVEIQSHLRHPNILR-LYGYFHDATRVYLILEY 90

Query: 637 APKGTLFDVL--HGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK 694
           AP GT++  L      +      + Y     +A  L++ H   S  ++  D+   N+ L 
Sbjct: 91  APLGTVYRELQKLSKFDE--QRTATY--ITELANALSYCH---SKRVIHRDIKPENLLLG 143

Query: 695 SLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE----YAYTMRVTMAGNVYSFGV 750
           S  E +I D         S+     + + G++ Y+PPE      +  +V    +++S GV
Sbjct: 144 SAGELKIADFGWSVHAPSSR----RTDLCGTLDYLPPEMIEGRMHDEKV----DLWSLGV 195

Query: 751 ILLELLTGKT 760
           +  E L GK 
Sbjct: 196 LCYEFLVGKP 205

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 70.7 bits (174), Expect = 2e-13
 Identities = 38/190 (20%), Positives = 76/190 (40%), Gaps = 24/190 (12%)

Query: 578 SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEY 636
           +     +K L    ++ + G  H+  +E+E+   L + N+   +          YL  E+
Sbjct: 38  NKFIMALKVLF-KSQLEKEGVEHQLRREIEIQSHLRHPNI-LRMYNYFHDRKRIYLMLEF 95

Query: 637 APKGTLFDVL--HGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK 694
           AP+G L+  L  HG  +     ++ +     +A  L + H      ++  D+   N+ + 
Sbjct: 96  APRGELYKELQKHGRFDE--QRSATF--MEELADALHYCH---ERKVIHRDIKPENLLMG 148

Query: 695 SLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE----YAYTMRVTMAGNVYSFGV 750
              E +I D          +      T+ G++ Y+PPE      +  +V    +++  GV
Sbjct: 149 YKGELKIADFGWSVHAPSLR----RRTMCGTLDYLPPEMIEGKTHDEKV----DLWCAGV 200

Query: 751 ILLELLTGKT 760
           +  E L G  
Sbjct: 201 LCYEFLVGMP 210

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 70.1 bits (172), Expect = 4e-13
 Identities = 48/287 (16%), Positives = 102/287 (35%), Gaps = 52/287 (18%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           FS       +  G  Y +K++   ++        +  +E ++    ++ N++  +AY L 
Sbjct: 42  FSYVDLVEGLHDGHFYALKRILCHEQ----QDREEAQREADMHRLFNHPNILRLVAYCLR 97

Query: 627 SDSA----YLFYEYAPKGTLFDVLHGCLENALDWASRYS------IAVGVAQGLAFLHGF 676
              A    +L   +  +GTL++     +E   D  +  +      + +G+ +GL  +H  
Sbjct: 98  ERGAKHEAWLLLPFFKRGTLWNE----IERLKDKGNFLTEDQILWLLLGICRGLEAIH-- 151

Query: 677 TSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS-------LSTVAGSVGYI 729
            +      DL   NI L    +P + D+                      +    ++ Y 
Sbjct: 152 -AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYR 210

Query: 730 PPE----YAYTMRVTMAGNVYSFGVILLELLTGKT---AVNQGNELAKWVLRNSAQQDKL 782
            PE     ++ + +    +V+S G +L  ++ G+     V Q  +     ++N     + 
Sbjct: 211 APELFSVQSHCV-IDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSIPQS 269

Query: 783 DHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
                   S     + + M+T          V P  RP +  +L  L
Sbjct: 270 PR-----HSSALWQLLNSMMT----------VDPHQRPHIPLLLSQL 301

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 71.0 bits (174), Expect = 5e-13
 Identities = 55/289 (19%), Positives = 101/289 (34%), Gaps = 50/289 (17%)

Query: 568 FSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSN-SNVMTPLAYVLA 626
             T        G    +K++        +        E+++L +  +  NV+        
Sbjct: 28  SGTVVFQGSFQGRPVAVKRML-------IDFCDIALMEIKLLTESDDHPNVIRYYCSETT 80

Query: 627 SDSAYLFYEYAPKGTLFDVL--HGCLENALDWASRYSIAV---GVAQGLAFLHGFTSNPI 681
               Y+  E      L D++      +  L     Y+       +A G+A LH   S  I
Sbjct: 81  DRFLYIALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLH---SLKI 136

Query: 682 LLLDLSTRNIFLKSLKEPQ-------------IGDIELCKVIDPSKS--TGSLSTVAGSV 726
           +  DL  +NI + +                  I D  LCK +D  +S    +L+  +G+ 
Sbjct: 137 IHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTS 196

Query: 727 GYIPPE-------YAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQ 778
           G+  PE            R+T + +++S G +   +L+ GK            ++R    
Sbjct: 197 GWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRESNIIRGIFS 256

Query: 779 QDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLR 827
            D++  + D ++   +  + SQM+             P  RP    VLR
Sbjct: 257 LDEMKCLHDRSLIAEATDLISQMID----------HDPLKRPTAMKVLR 295

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 68.5 bits (168), Expect = 8e-13
 Identities = 44/224 (19%), Positives = 73/224 (32%), Gaps = 17/224 (7%)

Query: 182 NKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTS 241
             +  V P   L   N    +L    +   + Q     +       +  I  +       
Sbjct: 7   TPINQVFPDPGL--ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNS-NIQSLAG--MQF 61

Query: 242 LEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLN 301
              L  L L +N  + + P  L     L  L++ +N L     I    L  L + N +L 
Sbjct: 62  FTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELR 119

Query: 302 KLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITN 361
                       LK L  ++I  N L  SI   L  L+ L  L+L  N +  +    +T 
Sbjct: 120 DTDS-----LIHLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEIT-NTGG-LTR 170

Query: 362 MRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTF 405
           ++ +  + L G +         P L I  N   +     I   +
Sbjct: 171 LKKVNWIDLTGQKCVNEPVKYQPELYI-TNTVKDPDGRWISPYY 213

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 51/256 (19%), Positives = 94/256 (36%), Gaps = 38/256 (14%)

Query: 97  GIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFA 156
                 N    +L   +++  V     ELS ++      +N           I +L+   
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSN-----------IQSLAGMQ 60

Query: 157 ANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNM 216
              N             L+ L LS+N++  + P+  L    L+ + ++ N L+ +L    
Sbjct: 61  FFTN-------------LKELHLSHNQISDLSPLKDL--TKLEELSVNRNRLK-NLNGIP 104

Query: 217 SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQ 276
           S  L RL L  N  + +  S     L+ L  L + NN    ++   LG    L +L+L  
Sbjct: 105 SACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHG 159

Query: 277 NELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLS 336
           NE+  +    L  L  +  ++L   K   E      +L + +T+           P ++S
Sbjct: 160 NEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS--PYYIS 215

Query: 337 NLTNLVNLNLRQNNLN 352
           N  + V+  +      
Sbjct: 216 NGGSYVDGCVLWELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 45/244 (18%), Positives = 80/244 (32%), Gaps = 36/244 (14%)

Query: 10  LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGF 69
               N  K  +  L +    +G++  +  ++N+     +Q     +LK L+LS N+ +  
Sbjct: 21  AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQ--FFTNLKELHLSHNQISDL 78

Query: 70  LPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLE 129
               L     LEEL ++ N       K +    +  L  L  +N      D +  L  LE
Sbjct: 79  --SPLKDLTKLEELSVNRNRL-----KNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLE 131

Query: 130 VLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIP 189
           +L +  N L      S+  +  LS+                   L  LDL  N++     
Sbjct: 132 ILSIRNNKL-----KSIVMLGFLSK-------------------LEVLDLHGNEITNTGG 167

Query: 190 IDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLE 249
           +  L    +  IDL+      + P    P L       +     I     ++        
Sbjct: 168 LTRL--KKVNWIDLTGQKCV-NEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGC 224

Query: 250 LDNN 253
           +   
Sbjct: 225 VLWE 228

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 49/277 (17%), Positives = 95/277 (34%), Gaps = 44/277 (15%)

Query: 51  DELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLS 110
             L +    NL K        ++  +   ++      +    +   G+  + NL  + LS
Sbjct: 16  PGLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHLS 71

Query: 111 ANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGI 170
            N +S   P  + +L+KLE L ++ N L      +L  I +                   
Sbjct: 72  HNQISDLSP--LKDLTKLEELSVNRNRL-----KNLNGIPSAC----------------- 107

Query: 171 TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLL 230
              L  L L  N+L     +  L   NL+ + +  N L+  +       L  L L  N  
Sbjct: 108 ---LSRLFLDNNELRDTDSLIHL--KNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGN-E 161

Query: 231 IGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSL--PIQLG 288
           I        T L+K+ +++L          + +     L + N  ++  +G    P  + 
Sbjct: 162 ITNTGG--LTRLKKVNWIDLTGQKCV---NEPVKYQPELYITNTVKD-PDGRWISPYYIS 215

Query: 289 SLGILQVMNL--QLNKLSGEIPSQFSQLKLLSTMNIS 323
           + G      +  +L   + E+  +FS+   +      
Sbjct: 216 NGGSYVDGCVLWELPVYTDEVSYKFSEYINVGETEAI 252

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 33/196 (16%), Positives = 68/196 (34%), Gaps = 14/196 (7%)

Query: 174 LRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGE 233
               +L    +  ++    L    +Q  +   + ++         NL  L L  N  I +
Sbjct: 21  AVKQNLGKQSVTDLVSQKEL--SGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQ-ISD 77

Query: 234 IPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGIL 293
           +       L KL  L ++ N    +          L+ L L  NEL  +    L  L  L
Sbjct: 78  LSP--LKDLTKLEELSVNRNRLKNLNG---IPSACLSRLFLDNNELRDTDS--LIHLKNL 130

Query: 294 QVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNG 353
           ++++++ NKL   I      L  L  +++  N ++ +    L+ L  +  ++L       
Sbjct: 131 EILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEIT-NT-GGLTRLKKVNWIDLTGQKCVN 186

Query: 354 SIPNSITNMRSLIELQ 369
                   +     ++
Sbjct: 187 EPVKYQPELYITNTVK 202

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 40/207 (19%), Positives = 73/207 (35%), Gaps = 39/207 (18%)

Query: 241 SLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQL 300
            L       L   S T ++         +   N   +                      +
Sbjct: 17  GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNS---------------------NI 53

Query: 301 NKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSIT 360
             L+G           L  +++S N +S  + S L +LT L  L++ +N L  ++     
Sbjct: 54  QSLAG-----MQFFTNLKELHLSHNQIS-DL-SPLKDLTKLEELSVNRNRLK-NLNGI-- 103

Query: 361 NMRSLIELQLGGNQLSGTIPMMP-PRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNN 419
               L  L L  N+L  T  ++    L+I L++ +N  +  +      L+ LEVLDL  N
Sbjct: 104 PSACLSRLFLDNNELRDTDSLIHLKNLEI-LSIRNNKLKSIVM--LGFLSKLEVLDLHGN 160

Query: 420 RFSGEIPQLLAQMPTLTQLLLTNNQLS 446
             +      L ++  +  + LT  +  
Sbjct: 161 EITNTGG--LTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 7/118 (5%)

Query: 333 SFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNL 392
                L N V  NL + ++   + +    +  +       + +     M        L+L
Sbjct: 13  FPDPGLANAVKQNLGKQSVT-DLVS-QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHL 70

Query: 393 SSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVP 450
           S N      P     L  LE L ++ NR    +  +      L++L L NN+L     
Sbjct: 71  SHNQISDLSP--LKDLTKLEELSVNRNRLK-NLNGI--PSACLSRLFLDNNELRDTDS 123

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 54/171 (31%), Positives = 79/171 (46%), Gaps = 15/171 (8%)

Query: 211 SLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGM---IPQQLGSCR 267
           S+P  +  +  +L L +   +  +  ATF  L KLT+L LD N    +   +   L    
Sbjct: 28  SVPSGIPADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL---T 83

Query: 268 SLTLLNLAQNELNGSLPIQL-GSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNS 326
            L  L LA N+L  SLP+ +   L  L  + L  N+L       F +L  L  + ++ N 
Sbjct: 84  ELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ 142

Query: 327 LSGSIPS--FLSNLTNLVNLNLRQNNLNGSIPNSI-TNMRSLIELQLGGNQ 374
           L  SIP+  F   LTNL  L+L  N L  S+P+     +  L  + L GNQ
Sbjct: 143 LQ-SIPAGAF-DKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 62.8 bits (153), Expect = 6e-11
 Identities = 44/162 (27%), Positives = 60/162 (37%), Gaps = 11/162 (6%)

Query: 165 SVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNM---SPNLV 221
           SVP GI      LDL    L  +          L  ++L  N L+ +L   +      L 
Sbjct: 28  SVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELG 86

Query: 222 RLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNG 281
            L L  N L   +P   F  L +L  L L  N    +          L  L L  N+L  
Sbjct: 87  TLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ- 144

Query: 282 SLPIQLG---SLGILQVMNLQLNKLSGEIPSQFSQLKLLSTM 320
           S+P   G    L  LQ ++L  N+L       F +L  L T+
Sbjct: 145 SIPA--GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 60.1 bits (146), Expect = 4e-10
 Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 18/161 (11%)

Query: 294 QVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPS-FLSNLTNLVNLNLRQNNLN 352
           + ++LQ   L+    + F  L  L+ +N+ +N L  ++ +    +LT L  L L  N L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 353 GSIPNSI-TNMRSLIELQLGGNQLSGTIPMMPPR-------LQIALNLSSNLFEGPIPT- 403
            S+P  +  ++  L +L LGGNQL      +P         L+  L L++N  +  IP  
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQLKS----LPSGVFDRLTKLKE-LRLNTNQLQS-IPAG 149

Query: 404 TFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQ 444
            F +L  L+ L LS N+          ++  L  + L  NQ
Sbjct: 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 45/139 (32%), Positives = 59/139 (42%), Gaps = 8/139 (5%)

Query: 6   GIDGLKLLNFSKNELVSLPT--FNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSK 63
           G+  L  LN   N+L +L    F+    L  L  ++N L       FD L  L  L L  
Sbjct: 57  GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116

Query: 64  NKFNGFLPINL-GKTKALEELVLSGNAFHGEIPKGIADY-RNLTLIDLSANNLSGSVPDR 121
           N+    LP  +  +   L+EL L+ N     IP G  D   NL  + LS N L  SVP  
Sbjct: 117 NQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHG 173

Query: 122 I-GELSKLEVLILSANNLD 139
               L KL+ + L  N  D
Sbjct: 174 AFDRLGKLQTITLFGNQFD 192

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 49/183 (26%), Positives = 65/183 (35%), Gaps = 40/183 (21%)

Query: 33  EVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHG 92
           E LD  S  L    +  F  L  L  LNL  N+                           
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-------------------------Q 72

Query: 93  EIPKGIADY-RNLTLIDLSANNLSGSVPDRI-GELSKLEVLILSANNLDGRLP----TSL 146
            +  G+ D    L  + L+ N L+ S+P  +   L++L+ L L  N L   LP      L
Sbjct: 73  TLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRL 130

Query: 147 ASITTLSRFAANQNKFSGSVPGGITRFLRNL---DLSYNKLLGVIPIDLLSHPNLQTIDL 203
             +  L     N N+   S+P G    L NL    LS N+L  V          LQTI L
Sbjct: 131 TKLKELR---LNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186

Query: 204 SVN 206
             N
Sbjct: 187 FGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 8/123 (6%)

Query: 330 SIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPM----MPPR 385
           S+PS +    +   L+L+   L      +   +  L  L L  NQL  T+          
Sbjct: 28  SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTE 84

Query: 386 LQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQL 445
           L   L L++N         F  L  L+ L L  N+       +  ++  L +L L  NQL
Sbjct: 85  LGT-LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143

Query: 446 SGV 448
             +
Sbjct: 144 QSI 146

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 69.8 bits (171), Expect = 1e-12
 Identities = 39/203 (19%), Positives = 68/203 (33%), Gaps = 26/203 (12%)

Query: 568 FSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSN-SNVMTPLAYVLA 626
             T     M       +K++               D+E+++L +     NV+        
Sbjct: 37  EGTIVYRGMFDNRDVAVKRILPEC-------FSFADREVQLLRESDEHPNVIRYFCTEKD 89

Query: 627 SDSAYLFYEYAPKGTLFDVL--HGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLL 684
               Y+  E     TL + +         L+     ++      GLA LH   S  I+  
Sbjct: 90  RQFQYIAIELCA-ATLQEYVEQKDFAHLGLE---PITLLQQTTSGLAHLH---SLNIVHR 142

Query: 685 DLSTRNIFLKSLKEPQ-----IGDIELCKVIDPSKST-GSLSTVAGSVGYIPPEY---AY 735
           DL   NI +            I D  LCK +   + +    S V G+ G+I PE      
Sbjct: 143 DLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDC 202

Query: 736 TMRVTMAGNVYSFGVILLELLTG 758
               T   +++S G +   +++ 
Sbjct: 203 KENPTYTVDIFSAGCVFYYVISE 225

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 68.8 bits (168), Expect = 1e-12
 Identities = 50/275 (18%), Positives = 90/275 (32%), Gaps = 40/275 (14%)

Query: 569 STYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD 628
                      +    +  +W               ++  +   S  N +  L       
Sbjct: 77  PPEKWQEEMDEIWLKDESTDWPLSSPS--PMDAPSVKIRRMDPFSTKNTVGQLQPSSPKV 134

Query: 629 SAYLFYEYAPKGTLFDVL-HGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLS 687
             Y+  +   K  L D +   C     +      I + +A+ + FLH   S  ++  DL 
Sbjct: 135 YLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLH---SKGLMHRDLK 191

Query: 688 TRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVA-------GSVG---YIPPEY---- 733
             NIF       ++GD  L   +D  +   ++ T         G VG   Y+ PE     
Sbjct: 192 PSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGN 251

Query: 734 AYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT 793
            Y+ +V +    +S G+IL ELL   +      E  +  +    +  K   +      + 
Sbjct: 252 NYSHKVDI----FSLGLILFELLYSFST---QMERVR--IITDVRNLKFPLLFTQKYPQE 302

Query: 794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828
            + V+  ML          S SP  RP+   ++  
Sbjct: 303 HMMVQ-DML----------SPSPTERPEATDIIEN 326

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 68.8 bits (168), Expect = 1e-12
 Identities = 30/212 (14%), Positives = 64/212 (30%), Gaps = 27/212 (12%)

Query: 568 FSTYYKAV------MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPL 621
           F+  Y+A         +   + +K        ++    +   + +E L        M   
Sbjct: 78  FAQVYEATQGDLNDAKNKQKFVLKVQK-PANPWEF---YIGTQLMERLKPSMQHMFMKFY 133

Query: 622 AYVLASDSAYLFYEYAPKGTLFDVL---HGCLENALDWASRYSIAVGVAQGLAFLHGFTS 678
           +  L  + + L  E    GTL + +       E  +      S A+ +   +  +H    
Sbjct: 134 SAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH---D 190

Query: 679 NPILLLDLSTRNIFLKSLKEPQIGDIEL---CKVIDPSKS--------TGSLSTVAGSVG 727
             I+  D+   N  L +    Q  + +L     +ID  +S            +    + G
Sbjct: 191 CEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSG 250

Query: 728 YIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
           +   E           + +     +  +L G 
Sbjct: 251 FQCVEMLSNKPWNYQIDYFGVAATVYCMLFGT 282

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 5/140 (3%)

Query: 165 SVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNM---SPNLV 221
            +P  +   +  + L  N +  + P     +  L+ IDLS N +   L  +      +L 
Sbjct: 25  EIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLN 83

Query: 222 RLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNG 281
            L L  N +  E+P + F  L  L  L L+ N    +         +L LL+L  N+L  
Sbjct: 84  SLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142

Query: 282 SLPIQLGSLGILQVMNLQLN 301
                   L  +Q M+L  N
Sbjct: 143 IAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 62.0 bits (151), Expect = 6e-11
 Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 26/152 (17%)

Query: 294 QVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPS-FLSNLTNLVNLNLRQNNLN 352
             + L+ N +    P  FS  K L  +++S N +S  +       L +L +L L  N + 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 353 GSIPNSI-TNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGL 411
             +P S+   + SL  L L  N+++  +                         F  L+ L
Sbjct: 94  -ELPKSLFEGLFSLQLLLLNANKIN-CLR---------------------VDAFQDLHNL 130

Query: 412 EVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNN 443
            +L L +N+         + +  +  + L  N
Sbjct: 131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 12/134 (8%)

Query: 13  LNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQ---FDELVSLKSLNLSKNKFN 67
           +   +N +  +P   F+ +  L  +D S+N ++    L    F  L SL SL L  NK  
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS---ELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 68  GFLPINLGKTKALEELVLSGNAFHGEIPKGIADY-RNLTLIDLSANNLSGSVPDRIGE-L 125
                      +L+ L+L+ N  +  +         NL L+ L  N L  ++       L
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPL 151

Query: 126 SKLEVLILSANNLD 139
             ++ + L+ N   
Sbjct: 152 RAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 30/143 (20%)

Query: 307 IPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSI-TNMRSL 365
           +P   ++++L        N++    P   S    L  ++L  N ++  +       +RSL
Sbjct: 30  LPETITEIRL------EQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSL 82

Query: 366 IELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEI 425
             L L GN+++  +P                      + F  L  L++L L+ N+ +   
Sbjct: 83  NSLVLYGNKIT-ELP---------------------KSLFEGLFSLQLLLLNANKINCLR 120

Query: 426 PQLLAQMPTLTQLLLTNNQLSGV 448
                 +  L  L L +N+L  +
Sbjct: 121 VDAFQDLHNLNLLSLYDNKLQTI 143

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 41/178 (23%), Positives = 60/178 (33%), Gaps = 51/178 (28%)

Query: 81  EELVLSGNAFHGEIPKGI-ADYRNLTLIDLSANNLSGSVPDRI-GELSKLEVLILSANNL 138
            E+ L  N     IP G  + Y+ L  IDLS N +S  +       L  L  L+L  N +
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI 92

Query: 139 DGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSH-PN 197
                T L                  S+  G+   L+ L L+ NK +  + +D      N
Sbjct: 93  -----TELPK----------------SLFEGLFS-LQLLLLNANK-INCLRVDAFQDLHN 129

Query: 198 LQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSF 255
           L  + L  N L+                        I   TF+ L  +  + L  N F
Sbjct: 130 LNLLSLYDNKLQ-----------------------TIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 10  LKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFN 67
           L  L    N++  LP   F G   L++L  ++N +N      F +L +L  L+L  NK  
Sbjct: 82  LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141

Query: 68  GFLPINLGKTKALEELVLSGNAFH 91
                     +A++ + L+ N F 
Sbjct: 142 TIAKGTFSPLRAIQTMHLAQNPFI 165

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 66.1 bits (162), Expect = 7e-12
 Identities = 47/278 (16%), Positives = 95/278 (34%), Gaps = 45/278 (16%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           +    K      G     K+L++               E+ +L +L + N++     ++ 
Sbjct: 19  YGRCQKIRRKSDGKILVWKELDYGSMTEA--EKQMLVSEVNLLRELKHPNIVRYYDRIID 76

Query: 627 SDSAYLFY--EYAPKGTLFDVLHGCLEN--------ALDWASRYSIAVGVAQGLAFLH-- 674
             +  L+   EY   G L  V+    +          L   ++      +   L   H  
Sbjct: 77  RTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQ------LTLALKECHRR 130

Query: 675 GFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE-- 732
               + +L  DL   N+FL   +  ++GD  L ++++   S     T  G+  Y+ PE  
Sbjct: 131 SDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSF--AKTFVGTPYYMSPEQM 188

Query: 733 --YAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV 790
              +Y  +     +++S G +L EL          ++     L    ++ K   I     
Sbjct: 189 NRMSYNEKS----DIWSLGCLLYELCALMPPFTAFSQKE---LAGKIREGKFRRIPY-RY 240

Query: 791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828
           S     + ++ML           +    RP ++ +L  
Sbjct: 241 SDELNEIITRMLN----------LKDYHRPSVEEILEN 268

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 65.3 bits (160), Expect = 1e-11
 Identities = 39/203 (19%), Positives = 76/203 (37%), Gaps = 29/203 (14%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           F+  ++     +   +  K +  S  + +     K   E+ +   L++ +V+        
Sbjct: 28  FAKCFEISDADTKEVFAGKIVPKS-LLLKPHQREKMSMEISIHRSLAHQHVVG-FHGFFE 85

Query: 627 SDS-AYLFYEYAPKGTLFDVL--HGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILL 683
            +   ++  E   + +L ++      L    +  +RY     +  G  +LH    N ++ 
Sbjct: 86  DNDFVFVVLELCRRRSLLELHKRRKALT---EPEARY-YLRQIVLGCQYLH---RNRVIH 138

Query: 684 LDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAG 743
            DL   N+FL    E +IGD  L   ++          + G+  YI PE        ++ 
Sbjct: 139 RDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE--RKKVLCGTPNYIAPE-------VLSK 189

Query: 744 NVYSF-------GVILLELLTGK 759
             +SF       G I+  LL GK
Sbjct: 190 KGHSFEVDVWSIGCIMYTLLVGK 212

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 8/142 (5%)

Query: 165 SVPGGITRFLRNLDLSYNKLLGVIPIDLLSH-PNLQTIDLSVNMLEGSLPQNM---SPNL 220
            +P  I ++   L L+ N+   +    +    P L+ I+ S N +   + +     +  +
Sbjct: 25  KIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGV 83

Query: 221 VRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELN 280
             + L +N L   +    F  LE L  L L +N  T +         S+ LL+L  N++ 
Sbjct: 84  NEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142

Query: 281 GSLPIQ-LGSLGILQVMNLQLN 301
            ++      +L  L  +NL  N
Sbjct: 143 -TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 28/167 (16%), Positives = 55/167 (32%), Gaps = 28/167 (16%)

Query: 211 SLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLT 270
            +P+++      LRL  N       +  F  L +L  +   NN  T +          + 
Sbjct: 25  KIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN 84

Query: 271 LLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGS 330
            + L  N L  ++                           F  L+ L T+ +  N ++  
Sbjct: 85  EILLTSNRLE-NVQ-----------------------HKMFKGLESLKTLMLRSNRIT-C 119

Query: 331 IPSFL-SNLTNLVNLNLRQNNLNGSIPNSI-TNMRSLIELQLGGNQL 375
           + +     L+++  L+L  N +  ++       + SL  L L  N  
Sbjct: 120 VGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 59.7 bits (145), Expect = 4e-10
 Identities = 26/155 (16%), Positives = 57/155 (36%), Gaps = 27/155 (17%)

Query: 294 QVMNLQLNKLSGEIPSQ--FSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNL 351
             + L  N+ +  + +   F +L  L  +N S N ++          + +  + L  N L
Sbjct: 35  AELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93

Query: 352 NGSIPNSI-TNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNG 410
             ++ + +   + SL  L L  N+++  +                        +F  L+ 
Sbjct: 94  E-NVQHKMFKGLESLKTLMLRSNRIT-CVG---------------------NDSFIGLSS 130

Query: 411 LEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQL 445
           + +L L +N+ +   P     + +L+ L L  N  
Sbjct: 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 7/132 (5%)

Query: 13  LNFSKNELVSLP---TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGF 69
           L  + NE   L     F     L  ++FS+N +       F+    +  + L+ N+    
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96

Query: 70  LPINLGKTKALEELVLSGNAFHGEIPKGIADY-RNLTLIDLSANNLSGSVPDRI-GELSK 127
                   ++L+ L+L  N     +         ++ L+ L  N ++ +V       L  
Sbjct: 97  QHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHS 154

Query: 128 LEVLILSANNLD 139
           L  L L AN  +
Sbjct: 155 LSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 11/127 (8%)

Query: 330 SIPSFLSNLTNLVNLNLRQNNLNGSIPNSI-TNMRSLIELQLGGNQLSGTIPMMP----P 384
            IP  +        L L  N         I   +  L ++    N+++  I         
Sbjct: 25  KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGAS 81

Query: 385 RLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQ-LLAQMPTLTQLLLTNN 443
            +   + L+SN  E      F  L  L+ L L +NR +  +       + ++  L L +N
Sbjct: 82  GVNE-ILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDN 139

Query: 444 QLSGVVP 450
           Q++ V P
Sbjct: 140 QITTVAP 146

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 4/106 (3%)

Query: 10  LKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFN 67
           L+ +NFS N++  +    F G +G+  +  +SN L    +  F  L SLK+L L  N+  
Sbjct: 59  LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118

Query: 68  GFLPINLGKTKALEELVLSGNAFHGEIPKGIADY-RNLTLIDLSAN 112
                +     ++  L L  N     +  G  D   +L+ ++L AN
Sbjct: 119 CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 2/84 (2%)

Query: 10  LKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFN 67
           +  +  + N L ++    F G   L+ L   SN +    N  F  L S++ L+L  N+  
Sbjct: 83  VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142

Query: 68  GFLPINLGKTKALEELVLSGNAFH 91
              P       +L  L L  N F+
Sbjct: 143 TVAPGAFDTLHSLSTLNLLANPFN 166

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 39/203 (19%), Positives = 76/203 (37%), Gaps = 29/203 (14%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           F+  ++     +   +  K +  S  + +     K   E+ +   L++ +V+        
Sbjct: 54  FAKCFEISDADTKEVFAGKIVPKS-LLLKPHQREKMSMEISIHRSLAHQHVVG-FHGFFE 111

Query: 627 SDSA-YLFYEYAPKGTLFDVL--HGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILL 683
            +   ++  E   + +L ++      L    +  +RY     +  G  +LH    N ++ 
Sbjct: 112 DNDFVFVVLELCRRRSLLELHKRRKALT---EPEARY-YLRQIVLGCQYLH---RNRVIH 164

Query: 684 LDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAG 743
            DL   N+FL    E +IGD  L   ++          + G+  YI PE        ++ 
Sbjct: 165 RDLKLGNLFLNEDLEVKIGDFGLATKVEYDGER--KKVLCGTPNYIAPE-------VLSK 215

Query: 744 NVYSF-------GVILLELLTGK 759
             +SF       G I+  LL GK
Sbjct: 216 KGHSFEVDVWSIGCIMYTLLVGK 238

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 17/166 (10%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSA----YLFYEYAPKGTLFDVL--HGCLENAL 654
           +F +E E+L  L + N++       ++        L  E    GTL   L     ++  +
Sbjct: 71  RFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKV 130

Query: 655 DWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK-EPQIGDIELCKVIDPS 713
              S       + +GL FLH   + PI+  DL   NIF+       +IGD+ L  +   S
Sbjct: 131 -LRS---WCRQILKGLQFLHT-RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRAS 185

Query: 714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
            +      V G+  ++ PE  Y  +   + +VY+FG+ +LE+ T +
Sbjct: 186 FA----KAVIGTPEFMAPEM-YEEKYDESVDVYAFGMCMLEMATSE 226

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 52/262 (19%), Positives = 94/262 (35%), Gaps = 22/262 (8%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           F           G  Y IK++N S    +     +  +E+ VL  + + N++        
Sbjct: 37  FGKAILVKSTEDGRQYVIKEINISRMSSK--EREESRREVAVLANMKHPNIVQYRESFEE 94

Query: 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL 686
           + S Y+  +Y   G LF  ++                V +   L  +H      IL  D+
Sbjct: 95  NGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVH---DRKILHRDI 151

Query: 687 STRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVY 746
            ++NIFL      Q+GD  + +V++ +          G+  Y+ PE           +++
Sbjct: 152 KSQNIFLTKDGTVQLGDFGIARVLNSTVE--LARACIGTPYYLSPEICENKPYNNKSDIW 209

Query: 747 SFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLK 806
           + G +L EL T K A   G+      L           +   + S    ++ SQ+     
Sbjct: 210 ALGCVLYELCTLKHAFEAGSMKN---LVLKIISGSFPPVSL-HYSYDLRSLVSQLF---- 261

Query: 807 VAVACVSVSPEARPKMKSVLRM 828
                   +P  RP + S+L  
Sbjct: 262 ------KRNPRDRPSVNSILEK 277

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.0 bits (160), Expect = 4e-11
 Identities = 69/419 (16%), Positives = 132/419 (31%), Gaps = 104/419 (24%)

Query: 32  LEVLDFSSNNLNGNINLQFDELVSLK-SLNLSKNKFNGFLPINLGKTKALEELVLSG--- 87
           LE+L      ++ N   + D   ++K  ++  + +    L     +   L  LVL     
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-NCL--LVLLNVQN 255

Query: 88  ----NAFHGEIPKGIADYRNLTLI---DLS-ANNLSG------SVPDRIGELSKLEVLIL 133
               NAF         +     L+        + LS       S+      L+  EV  L
Sbjct: 256 AKAWNAF---------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 134 SANNLDGR---LPTSLASIT--TLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVI 188
               LD R   LP  + +     LS  A        S+  G+  +     ++ +KL    
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAE-------SIRDGLATWDNWKHVNCDKLT--- 356

Query: 189 PIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSL-EKLTY 247
                       I+ S+N+LE +  + M   L       +     IP+   + +   +  
Sbjct: 357 ----------TIIESSLNVLEPAEYRKMFDRLSVFPPSAH-----IPTILLSLIWFDVIK 401

Query: 248 LELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLP-IQLGSLGILQVMNL-QLNKLSG 305
            ++            +      +L+     E   S+P I L     +++ N   L++   
Sbjct: 402 SDVM---------VVVNKLHKYSLVEKQPKESTISIPSIYLELK--VKLENEYALHR--- 447

Query: 306 EIPSQFSQLKLLSTMNISWNSLSGSIPSF----LSNLTN----------LVNLN-----L 346
            I   ++  K   + ++    L     S     L N+ +           ++       +
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507

Query: 347 RQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIAL-----NLSSNLFEGP 400
           R ++   +   SI N   L +L+     +    P    RL  A+      +  NL    
Sbjct: 508 RHDSTAWNASGSILNT--LQQLKFYKPYICDNDP-KYERLVNAILDFLPKIEENLICSK 563

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 2e-09
 Identities = 119/779 (15%), Positives = 228/779 (29%), Gaps = 274/779 (35%)

Query: 91  HGEIPKGIADYRNLTLI---------DLSANNLSGSVPDRIGE-LSKLEV--LILSANNL 138
           H +   G   Y+   ++         +    +    V D     LSK E+  +I+S + +
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKD----VQDMPKSILSKEEIDHIIMSKDAV 61

Query: 139 DG--RLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRN-LDLSYNKLLGVIPIDLLSH 195
            G  RL        TL                 + +F+   L ++Y  L+  I  +    
Sbjct: 62  SGTLRL------FWTLLSKQEE----------MVQKFVEEVLRINYKFLMSPIKTEQRQ- 104

Query: 196 PNLQTIDLS--VNMLEGSLPQNMSP-NLVRLRLGTNLLIGEIPSATFTSLEKL---TYLE 249
           P++ T       + L     Q  +  N+ RL+    L           +L +L     + 
Sbjct: 105 PSMMTRMYIEQRDRLYND-NQVFAKYNVSRLQPYLKLR---------QALLELRPAKNVL 154

Query: 250 LDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPS 309
           +D     G+    LGS ++     +A +           S  +   M+            
Sbjct: 155 ID-----GV----LGSGKTW----VALDVCL--------SYKVQCKMD------------ 181

Query: 310 QFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQ 369
            F          I W                   LNL+  N     P ++  M   +  Q
Sbjct: 182 -F---------KIFW-------------------LNLKNCN----SPETVLEMLQKLLYQ 208

Query: 370 LGGNQLSGTIPMMPPRLQI---ALNLSSNLFEGPIPTTFARLNGLEVLD-LSNNR----F 421
           +  N  S +      +L+I      L   L   P        N L VL  + N +    F
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE------NCLLVLLNVQNAKAWNAF 262

Query: 422 SGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVSVDTTGNLKLINVTAPDTSPEKRRK 481
           +        ++     LL T      V       +S  TT ++ L + +   T  E    
Sbjct: 263 NLS-----CKI-----LLTTRF--KQVTDF----LSAATTTHISLDHHSMTLTPDE---- 302

Query: 482 SVVVPIVIALAAAILAVGVVSIFVLSISRRFYRVKDEHLQLGEDISSPQVIQGNLLTGNG 541
                       ++L              ++   + + L         +V+  N    + 
Sbjct: 303 ----------VKSLLL-------------KYLDCRPQDL-------PREVLTTNPRRLSI 332

Query: 542 IHRSNIDFTKAMEAVANPLNVELKTRFSTYYKAV----MPSGMSYFIKKLNWSD--KIFQ 595
           I  S  D                   +   +K V    + + +   +  L  ++  K+F 
Sbjct: 333 IAESIRDG---------------LATW-DNWKHVNCDKLTTIIESSLNVLEPAEYRKMF- 375

Query: 596 LGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENAL- 654
                     L V     ++++ T    +L+     L +    K  +  V++   + +L 
Sbjct: 376 --------DRLSVFPP--SAHIPTI---LLS-----LIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 655 --DWA-SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
                 S  SI                   + L+L  +     +L    +    + K  D
Sbjct: 418 EKQPKESTISI-----------PS------IYLELKVKLENEYALHRSIVDHYNIPKTFD 460

Query: 712 PSKSTGSLSTVAGSVGYIPPEY---AYTMR-VTMAGNVYSFGVILLEL--LTGK-----T 760
                  L        Y    Y    + ++ +     +  F ++ L+   L  K     T
Sbjct: 461 SDD----LIPPYLD-QYF---YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512

Query: 761 AVNQGNELA----------KWVLRNSAQQDKL-DHILDFNVSRTSLAVRSQMLTVLKVA 808
           A N    +            ++  N  + ++L + ILDF        + S+   +L++A
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 63.9 bits (156), Expect = 4e-11
 Identities = 60/295 (20%), Positives = 107/295 (36%), Gaps = 65/295 (22%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMT------- 619
           F    KA        Y IKK+  +++            E+ +L  L++  V+        
Sbjct: 19  FGQVVKARNALDSRYYAIKKIRHTEE-----KLSTILSEVMLLASLNHQYVVRYYAAWLE 73

Query: 620 ----PLAYVLASDSAYLFY--EYAPKGTLFDVLH---GCLENALDWASRYSIAVGVAQGL 670
                         + LF   EY   GTL+D++H      +    W     +   + + L
Sbjct: 74  RRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYW----RLFRQILEAL 129

Query: 671 AFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS------------KSTGS 718
           +++H   S  I+  DL   NIF+   +  +IGD  L K +  S             S+ +
Sbjct: 130 SYIH---SQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDN 186

Query: 719 LSTVAGSVGYIPPE-----YAYTMRVTMAGNVYSFGVILLELLTG-KTAVNQGNELAKWV 772
           L++  G+  Y+  E       Y  ++ M    YS G+I  E++    T + + N L K  
Sbjct: 187 LTSAIGTAMYVATEVLDGTGHYNEKIDM----YSLGIIFFEMIYPFSTGMERVNILKK-- 240

Query: 773 LRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLR 827
           LR+     +     D N  +    +   ++             P  RP  +++L 
Sbjct: 241 LRS--VSIEFPPDFDDNKMKVEKKIIRLLID----------HDPNKRPGARTLLN 283

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 63.3 bits (155), Expect = 5e-11
 Identities = 41/194 (21%), Positives = 83/194 (42%), Gaps = 18/194 (9%)

Query: 572 YKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA 630
           Y+A  + +G+   IK ++    +++ G   +   E+++  +L + +++  L       + 
Sbjct: 28  YRAESIHTGLEVAIKMIDKK-AMYKAGMVQRVQNEVKIHCQLKHPSILE-LYNYFEDSNY 85

Query: 631 -YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTR 689
            YL  E    G +   L   ++   +  +R+ +   +  G+ +LH   S+ IL  DL+  
Sbjct: 86  VYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMH-QIITGMLYLH---SHGILHRDLTLS 141

Query: 690 NIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE----YAYTMRVTMAGNV 745
           N+ L      +I D  L   +          T+ G+  YI PE     A+ +      +V
Sbjct: 142 NLLLTRNMNIKIADFGLATQLKM--PHEKHYTLCGTPNYISPEIATRSAHGLES----DV 195

Query: 746 YSFGVILLELLTGK 759
           +S G +   LL G+
Sbjct: 196 WSLGCMFYTLLIGR 209

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 63.8 bits (156), Expect = 5e-11
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 6/159 (3%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY 660
           +F++E+    +LS+ N+++ +      D  YL  EY    TL + +       L   +  
Sbjct: 57  RFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIES--HGPLSVDTAI 114

Query: 661 SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLS 720
           +    +  G+   H      I+  D+  +NI + S K  +I D  + K +  +  T + +
Sbjct: 115 NFTNQILDGIKHAH---DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQT-N 170

Query: 721 TVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
            V G+V Y  PE A         ++YS G++L E+L G+
Sbjct: 171 HVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGE 209

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 62.8 bits (153), Expect = 9e-11
 Identities = 58/288 (20%), Positives = 107/288 (37%), Gaps = 54/288 (18%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVM-------- 618
           F   ++A       +Y IK++   ++        K  +E++ L KL +  ++        
Sbjct: 18  FGVVFEAKNKVDDCNYAIKRIRLPNRELAR---EKVMREVKALAKLEHPGIVRYFNAWLE 74

Query: 619 --TPLAYVLASDSAYLF--YEYAPKGTLFDVLHG-CLENALDWASRYSIAVGVAQGLAFL 673
             T      +S   YL+   +   K  L D ++G C     + +    I + +A+ + FL
Sbjct: 75  KNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFL 134

Query: 674 HGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS-------TGSLSTVAGSV 726
           H   S  ++  DL   NIF       ++GD  L   +D  +          + +   G V
Sbjct: 135 H---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQV 191

Query: 727 G---YIPPE----YAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQ 779
           G   Y+ PE     +Y+ +V    +++S G+IL ELL      +   E  +       + 
Sbjct: 192 GTKLYMSPEQIHGNSYSHKV----DIFSLGLILFELL---YPFSTQMERVR--TLTDVRN 242

Query: 780 DKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLR 827
            K   +           +   ML          S SP  RP+  +++ 
Sbjct: 243 LKFPPLFT-QKYPCEYVMVQDML----------SPSPMERPEAINIIE 279

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 60/366 (16%), Positives = 116/366 (31%), Gaps = 79/366 (21%)

Query: 55  SLKSLNLSKNKF--NGFLPI--NLGKTKA-LEELVLSGNAFHGEIPKGIADY-----RNL 104
            + SL+LS N       + +      T A +  L LSGN+   +    +         N+
Sbjct: 23  GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82

Query: 105 TLIDLSANNLSGSVPDRIGEL-----SKLEVLILSANNLDGRLPTSLASITTLSRFAANQ 159
           T ++LS N LS    D + +        + VL L  N+       S  S +   +  +N 
Sbjct: 83  TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF------SSKSSSEFKQAFSNL 136

Query: 160 NKFSGSVPGGITRFLRNLDLSYNKL--LGVIPI-DLLSHPN--LQTIDLSVNMLE----- 209
                         + +L+L  N L       +  +L+     + +++L  N L      
Sbjct: 137 PAS-----------ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCA 185

Query: 210 --GSLPQNMSPNLVRLRLGTNLL----IGEIPSATFTSLEKLTYLELDNNSFTG----MI 259
                  ++  ++  L L  NLL      E+     +    +  L L  N   G     +
Sbjct: 186 ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL 245

Query: 260 PQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLST 319
                S + L  + L  + +      Q  +LG                 + F  ++ +  
Sbjct: 246 KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG-----------------AAFPNIQKIIL 288

Query: 320 MNISWNSLSGSIPSFLSNLTNLVNLNLRQNNL----------NGSIPNSITNMRSLIELQ 369
           ++ +   +  S    +SNL   ++      +L          + +    +     L E  
Sbjct: 289 VDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESI 348

Query: 370 LGGNQL 375
                L
Sbjct: 349 QTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 50/312 (16%), Positives = 97/312 (31%), Gaps = 73/312 (23%)

Query: 102 RNLTLIDLSANNLSGSVPDRIGEL-----SKLEVLILSANNLDGRLPTSLASITTLSRFA 156
             +T +DLS NNL       + +      + +  L LS N+L         +   L +  
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL------GFKNSDELVQIL 75

Query: 157 ANQNKFSGSVPGGITRFLRNLDLSYNKL--LGVIPI-DLLSHPN--LQTIDLSVNMLE-- 209
           A                + +L+LS N L       +   L+     +  +DL  N     
Sbjct: 76  AAIP-----------ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124

Query: 210 -----GSLPQNMSPNLVRLRLGTNLL----IGEIPSATFTSLEKLTYLELDNNSFTGMIP 260
                     N+  ++  L L  N L      E+          +  L L  N+      
Sbjct: 125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNC 184

Query: 261 QQLGS-----CRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLK 315
            +L         S+T L+L+ N L      +L  +                         
Sbjct: 185 AELAKFLASIPASVTSLDLSANLLGLKSYAELAYI-------FSSIPNH----------- 226

Query: 316 LLSTMNISWNSLSGS----IPSFLSNLTNLVNLNLRQNNLNG-------SIPNSITNMRS 364
            + ++N+  N L G     +     +L +L  + L  + +         ++  +  N++ 
Sbjct: 227 -VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285

Query: 365 LIELQLGGNQLS 376
           +I +   G ++ 
Sbjct: 286 IILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 53/317 (16%), Positives = 107/317 (33%), Gaps = 61/317 (19%)

Query: 174 LRNLDLSYNKL--LGVIPI-DLLSHPN--LQTIDLSVNMLE-------GSLPQNMSPNLV 221
           + +LDLS N L  +  + +    ++    + +++LS N L          +   +  N+ 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 222 RLRLGTNLL----IGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGS-----CRSLTLL 272
            L L  N L      E+          +T L+L  N F+     +          S+T L
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 273 NLAQNELNGSLPIQLGSL-----GILQVMNLQLNKLSGE--------IPSQFSQLKLLST 319
           NL  N+L      +L  +       +  +NL+ N L+ +        + S  + +  L  
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL-- 201

Query: 320 MNISWNSLSGS-----IPSFLSNLTNLVNLNLRQNNLNGS----IPNSITNMRSLIELQL 370
            ++S N L           F S   ++V+LNL  N L+G     +     +++ L  + L
Sbjct: 202 -DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260

Query: 371 GGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLA 430
             + +            ++      L        F  +  + ++D +           ++
Sbjct: 261 DYDIVK----------NMSKEQCKALGAA-----FPNIQKIILVDKNGKEIHPSHSIPIS 305

Query: 431 QMPTLTQLLLTNNQLSG 447
            +            L  
Sbjct: 306 NLIRELSGKADVPSLLN 322

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 42/222 (18%), Positives = 76/222 (34%), Gaps = 39/222 (17%)

Query: 263 LGSCRSLTLLNLAQNELNGSLPIQLGSL-----GILQVMNLQLNKLSGEIPSQFSQL--- 314
                 +T L+L+ N L     ++L          +  +NL  N L  +   +  Q+   
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 315 --KLLSTMNISWNSLSGS-----IPSFLSNLTNLVNLNLRQNNLNGSIPNSITNM----- 362
               ++++N+S N LS       + +  +    +  L+L  N+ +    +          
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 363 RSLIELQLGGNQ--------LSGTIPMMPPRLQIALNLSSNLF--EG--PIPTTFARLN- 409
            S+  L L GN         L   +  +P  +   LNL  N    +    +    A +  
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNS-LNLRGNNLASKNCAELAKFLASIPA 196

Query: 410 GLEVLDLSNNRFSGEIPQLLAQM-----PTLTQLLLTNNQLS 446
            +  LDLS N    +    LA +       +  L L  N L 
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 51/269 (18%), Positives = 105/269 (39%), Gaps = 30/269 (11%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSH---HKFDKELEVLGKLSNSNVMTPLAY 623
           FS  Y+A  +  G+   +KK+     IF L          KE+++L +L++ NV+   A 
Sbjct: 45  FSEVYRAACLLDGVPVALKKVQ----IFDLMDAKARADCIKEIDLLKQLNHPNVIKYYAS 100

Query: 624 VLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY--SIAVGVAQGLAFLHGFTSNPI 681
            +  +   +  E A  G L  ++    +       R      V +   L  +H   S  +
Sbjct: 101 FIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH---SRRV 157

Query: 682 LLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTM 741
           +  D+   N+F+ +    ++GD+ L +    S  T +  ++ G+  Y+ PE  +      
Sbjct: 158 MHRDIKPANVFITATGVVKLGDLGLGRFF--SSKTTAAHSLVGTPYYMSPERIHENGYNF 215

Query: 742 AGNVYSFGVILLELLTGKTA--VNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRS 799
             +++S G +L E+   ++    ++ N  +   L    +Q     +   + S     + +
Sbjct: 216 KSDIWSLGCLLYEMAALQSPFYGDKMNLYS---LCKKIEQCDYPPLPSDHYSEELRQLVN 272

Query: 800 QMLTVLKVAVACVSVSPEARPKMKSVLRM 828
             +             PE RP +  V  +
Sbjct: 273 MCIN----------PDPEKRPDVTYVYDV 291

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 60/400 (15%), Positives = 119/400 (29%), Gaps = 92/400 (23%)

Query: 80  LEELVLSGNAFHGE----IPKGIADYRNLTLIDLSANNLSGSVPDRIGEL----SKLEVL 131
           +E   L  +A   E    +   + +  ++  I LS N +       + E       LE+ 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 132 ILSANNLDGRLPTSLASITTLSR-FAANQNKFSGSVPGGITRFLRNLDLSYNKL--LGVI 188
             S             ++  L +                    L  + LS N        
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPK-------------LHTVRLSDNAFGPTAQE 112

Query: 189 PID--LLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLT 246
           P+   L  H  L+ + L  N L       ++  L  L +               +   L 
Sbjct: 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAK----------NAPPLR 162

Query: 247 YLELDNNSFT--GM--IPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNK 302
            +    N      M    +   S R L  + + QN         +   GI  +       
Sbjct: 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN--------GIRPEGIEHL------- 207

Query: 303 LSGEIPSQFSQLKLLSTMNISWNSLSG----SIPSFLSNLTNLVNLNLRQNNLNG----S 354
               +    +  + L  +++  N+ +     ++   L +  NL  L L    L+     +
Sbjct: 208 ----LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263

Query: 355 IPNSITNM--RSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLE 412
           + ++ + +    L  L+L  N++                L + + E        ++  L 
Sbjct: 264 VVDAFSKLENIGLQTLRLQYNEIEL---------DAVRTLKTVIDE--------KMPDLL 306

Query: 413 VLDLSNNRFS------GEIPQLLAQMPTLTQLLLTNNQLS 446
            L+L+ NRFS       EI ++ +         L + +  
Sbjct: 307 FLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEEL 346

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.1 bits (133), Expect = 5e-08
 Identities = 61/269 (22%), Positives = 93/269 (34%), Gaps = 58/269 (21%)

Query: 32  LEVLDFSSNNLNGNINLQFDELV----------SLKSLNLSKNKF--NGFLPIN--LGKT 77
           LE+ +FS        +   + L            L ++ LS N F      P+   L K 
Sbjct: 62  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121

Query: 78  KALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANN 137
             LE L L  N    +    IA      L +L+ N  + + P        L  +I   N 
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIAR----ALQELAVNKKAKNAP-------PLRSIICGRNR 170

Query: 138 LDGR----LPTSLASITTLSRFAANQNKFSGSVPGGITRF----------LRNLDLSYNK 183
           L+         +  S   L      QN      P GI             L+ LDL  N 
Sbjct: 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIR---PEGIEHLLLEGLAYCQELKVLDLQDNT 227

Query: 184 L--LGVIPI--DLLSHPNLQTIDLSVNML--EG------SLPQNMSPNLVRLRLGTNLL- 230
              LG   +   L S PNL+ + L+  +L   G      +  +  +  L  LRL  N + 
Sbjct: 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

Query: 231 ---IGEIPSATFTSLEKLTYLELDNNSFT 256
              +  + +     +  L +LEL+ N F+
Sbjct: 288 LDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 59/332 (17%), Positives = 103/332 (31%), Gaps = 84/332 (25%)

Query: 55  SLKSLNLSKNKFNG----FLPINLGKTKALEELVLSGN---AFHGEIPKG-------IAD 100
           S+K + LS N        +L  N+   K LE    S         EIP+        +  
Sbjct: 33  SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK 92

Query: 101 YRNLTLIDLSANNLSGSVPDRIGEL----SKLEVLILSANNLD----GRLPTSLASITTL 152
              L  + LS N    +  + + +     + LE L L  N L      ++  +L  +   
Sbjct: 93  CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVN 152

Query: 153 SRFAANQNKFSGSVPGGITRFLRNLDLSYNKL--LGVIPID--LLSHPNLQTIDLSVNML 208
            +                   LR++    N+L    +        SH  L T+ +  N +
Sbjct: 153 KKAKNAPP-------------LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI 199

Query: 209 EGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFT--GM--IPQQLG 264
                            G   L+ E         ++L  L+L +N+FT  G   +   L 
Sbjct: 200 RPE--------------GIEHLLLEG----LAYCQELKVLDLQDNTFTHLGSSALAIALK 241

Query: 265 SCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISW 324
           S  +L  L L    L+       G+  ++   +   N               L T+ + +
Sbjct: 242 SWPNLRELGLNDCLLSAR-----GAAAVVDAFSKLEN-------------IGLQTLRLQY 283

Query: 325 NSLSGS-----IPSFLSNLTNLVNLNLRQNNL 351
           N +               + +L+ L L  N  
Sbjct: 284 NEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 53/285 (18%), Positives = 95/285 (33%), Gaps = 39/285 (13%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYV-- 624
            +  ++     +G  + IK  N    I  L       +E EVL KL++ N++   A    
Sbjct: 22  TANVFRGRHKKTGDLFAIKVFN---NISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEE 78

Query: 625 LASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVG----VAQGLAFLHGFTSNP 680
             +    L  E+ P G+L+ VL    E +  +    S  +     V  G+  L     N 
Sbjct: 79  TTTRHKVLIMEFCPCGSLYTVLE---EPSNAYGLPESEFLIVLRDVVGGMNHLR---ENG 132

Query: 681 ILLLDLSTRNIFLKSLKEPQ----IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE-YAY 735
           I+  ++   NI     ++ Q    + D    + ++  +      ++ G+  Y+ P+ Y  
Sbjct: 133 IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQ---FVSLYGTEEYLHPDMYER 189

Query: 736 TMRVTMAGNVY-------SFGVILLELLTGKT--AVNQGNELAKWVLRNSAQQDKLDHIL 786
            +        Y       S GV      TG       +G    K V+           I 
Sbjct: 190 AVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAIS 249

Query: 787 DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN 831
               +       S  + V        S+S   +  +  VL  +L 
Sbjct: 250 GVQKAENGPIDWSGDMPV------SCSLSRGLQVLLTPVLANILE 288

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 37/171 (21%), Positives = 70/171 (40%), Gaps = 29/171 (16%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY 660
            F +   ++ KLS+ +++      +  D   L  E+   G+L   L    +N ++   + 
Sbjct: 58  SFFEAASMMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKN-KNCINILWKL 116

Query: 661 SIAVGVAQGLAFL------HGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK 714
            +A  +A  + FL      HG         ++  +NI L   ++ + G+    K+ DP  
Sbjct: 117 EVAKQLAAAMHFLEENTLIHG---------NVCAKNILLIREEDRKTGNPPFIKLSDP-- 165

Query: 715 STGSLS-TVAGSVGY------IPPE-YAYTMRVTMAGNVYSFGVILLELLT 757
             G +S TV            +PPE       + +A + +SFG  L E+ +
Sbjct: 166 --G-ISITVLPKDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICS 213

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 61.6 bits (149), Expect = 4e-10
 Identities = 30/248 (12%), Positives = 63/248 (25%), Gaps = 32/248 (12%)

Query: 593 IFQLGSHHKFDKELEVLGKLSNSNVM--TPLAYVLASDSAYLFYEYAPKGTLFDVL---- 646
             +     +     + +   S       +P     A  +  L    A    L  +     
Sbjct: 124 PEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAA-SVDLELLFSTLD 182

Query: 647 -HGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIE 705
                       + + +   + +  A L    S  ++    +  N+F+       +GD+ 
Sbjct: 183 FVYVFRGDEGILALHILTAQLIRLAANLQ---SKGLVHGHFTPDNLFIMPDGRLMLGDVS 239

Query: 706 LCKVIDPSKSTGSLSTVAGSVGYIPPEY--AYTMRVTMAGNVYSFGVILLELLTGKTAVN 763
                   K        +  V Y P E+  A T   T A N +  G+ +  +        
Sbjct: 240 ALW-----KVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFG 294

Query: 764 QGNELAKWVLRNSAQQDKLDHILDF-NVSRTSLAVR---SQMLTVLKVAVACVSVSPEAR 819
                 K   +  + +      L F + +     V+    + L                R
Sbjct: 295 LVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLN----------FDRRRR 344

Query: 820 PKMKSVLR 827
                 + 
Sbjct: 345 LLPLEAME 352

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 61.6 bits (150), Expect = 4e-10
 Identities = 44/209 (21%), Positives = 77/209 (36%), Gaps = 34/209 (16%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLN----WSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLA 622
                 A    +     I+ ++          +       + E+E+L KL++  ++  + 
Sbjct: 148 CGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIK-IK 206

Query: 623 YVLASDSAYLFYEYAPKGTLFD--VLHGCL-ENALDWASRYSIAVGVAQGLAFLHGFTSN 679
               ++  Y+  E    G LFD  V +  L E        Y   +     + +LH    N
Sbjct: 207 NFFDAEDYYIVLELMEGGELFDKVVGNKRLKEAT---CKLYFYQM--LLAVQYLH---EN 258

Query: 680 PILLLDLSTRNIFLKSLKEPQ---IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE---- 732
            I+  DL   N+ L S +E     I D    K++  +     + T+ G+  Y+ PE    
Sbjct: 259 GIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSL---MRTLCGTPTYLAPEVLVS 315

Query: 733 ---YAYTMRVTMAGNVYSFGVILLELLTG 758
                Y   V    + +S GVIL   L+G
Sbjct: 316 VGTAGYNRAV----DCWSLGVILFICLSG 340

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 59.3 bits (144), Expect = 5e-10
 Identities = 46/146 (31%), Positives = 62/146 (42%), Gaps = 6/146 (4%)

Query: 159 QNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQ---N 215
           ++K   SVP GI    + L L  N++  + P    S  NL+ + L  N L  +LP    +
Sbjct: 27  RSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFD 85

Query: 216 MSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLA 275
               L  L LGTN L   +PSA F  L  L  L +  N  T  +P+ +     LT L L 
Sbjct: 86  SLTQLTVLDLGTNQL-TVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALD 143

Query: 276 QNELNGSLPIQLGSLGILQVMNLQLN 301
           QN+L          L  L    L  N
Sbjct: 144 QNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%)

Query: 294 QVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPS--FLSNLTNLVNLNLRQNNL 351
           Q++ L  N+++   P  F  L  L  + +  N L  ++P   F  +LT L  L+L  N L
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVF-DSLTQLTVLDLGTNQL 100

Query: 352 NGSIPN----SITNMRSLIELQLGGNQLSGTIPMMPPRLQ--IALNLSSNLFEGPIPTTF 405
              +P+     + +   L EL +  N+L+  +P    RL     L L  N  +      F
Sbjct: 101 T-VLPSAVFDRLVH---LKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF 155

Query: 406 ARLNGLEVLDLSNN 419
            RL+ L    L  N
Sbjct: 156 DRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 5/108 (4%)

Query: 270 TLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSG 329
            +L L  N++    P    SL  L+ + L  N+L       F  L  L+ +++  N L+ 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT- 101

Query: 330 SIPS--FLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQL 375
            +PS  F   L +L  L +  N L   +P  I  +  L  L L  NQL
Sbjct: 102 VLPSAVF-DRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 39/133 (29%), Positives = 54/133 (40%), Gaps = 13/133 (9%)

Query: 11  KLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNG 68
           ++L    N++  L    F+    L+ L   SN L       FD L  L  L+L  N+   
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 69  FLPI----NLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRI-G 123
            LP      L     L+EL +  N    E+P+GI    +LT + L  N L  S+P     
Sbjct: 103 -LPSAVFDRLVH---LKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFD 156

Query: 124 ELSKLEVLILSAN 136
            LS L    L  N
Sbjct: 157 RLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 15/156 (9%)

Query: 3   SCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLS 62
           SC G      ++       S+P        ++L    N +       FD L++LK L L 
Sbjct: 18  SCSG----TTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLG 72

Query: 63  KNKFNGFLPINL-GKTKALEELVLSGNAFHGEIPKGIADY-RNLTLIDLSANNLSGSVPD 120
            N+    LP+ +      L  L L  N     +P  + D   +L  + +  N L+  +P 
Sbjct: 73  SNQLG-ALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPR 129

Query: 121 RIGELSKLEVLILSANNLDGRLPT----SLASITTL 152
            I  L+ L  L L  N L   +P      L+S+T  
Sbjct: 130 GIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHA 164

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 5/121 (4%)

Query: 330 SIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQ-- 387
           S+P+ +   TN   L L  N +    P    ++ +L EL LG NQL      +   L   
Sbjct: 33  SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90

Query: 388 IALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSG 447
             L+L +N         F RL  L+ L +  N+ + E+P+ + ++  LT L L  NQL  
Sbjct: 91  TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS 149

Query: 448 V 448
           +
Sbjct: 150 I 150

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 60.4 bits (147), Expect = 6e-10
 Identities = 39/210 (18%), Positives = 75/210 (35%), Gaps = 30/210 (14%)

Query: 568 FSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS--NSNVMTPLAYVL 625
            S  ++ +      Y IK +N  +   Q  +   +  E+  L KL   +  ++    Y +
Sbjct: 41  SSKVFQVLNEKKQIYAIKYVNLEEADNQ--TLDSYRNEIAYLNKLQQHSDKIIRLYDYEI 98

Query: 626 ASDSAYLFYEYAPKGTLFDVL--HGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILL 683
                Y+  E      L   L     ++        Y   +   + +  +H    + I+ 
Sbjct: 99  TDQYIYMVMECG-NIDLNSWLKKKKSID--PWERKSYWKNM--LEAVHTIH---QHGIVH 150

Query: 684 LDLSTRNIFLK--SLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE--------- 732
            DL   N  +    LK   + D  +   + P  ++    +  G+V Y+PPE         
Sbjct: 151 SDLKPANFLIVDGMLK---LIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSR 207

Query: 733 --YAYTMRVTMAGNVYSFGVILLELLTGKT 760
                  +++   +V+S G IL  +  GKT
Sbjct: 208 ENGKSKSKISPKSDVWSLGCILYYMTYGKT 237

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 58.1 bits (141), Expect = 8e-10
 Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 6/123 (4%)

Query: 159 QNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSH-PNLQTIDLSVNMLEGSLPQNM- 216
             +    +P  I      L L+ N+L  +    L    P+L  ++L  N L   +  N  
Sbjct: 16  TGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAF 74

Query: 217 --SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNL 274
             + ++  L+LG N +  EI +  F  L +L  L L +N  + ++P       SLT LNL
Sbjct: 75  EGASHIQELQLGENKI-KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133

Query: 275 AQN 277
           A N
Sbjct: 134 ASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 2/116 (1%)

Query: 211 SLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLT 270
            +P+++  +   L L  N L        F  L  L  LEL  N  TG+ P        + 
Sbjct: 22  EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81

Query: 271 LLNLAQNELNGSLPIQL-GSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWN 325
            L L +N++   +  ++   L  L+ +NL  N++S  +P  F  L  L+++N++ N
Sbjct: 82  ELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 31/131 (23%)

Query: 294 QVMNLQLNKLSGEIPSQ--FSQLKLLSTMNISWNSLSGSIPS--FLSNLTNLVNLNLRQN 349
             + L  N+L   I S   F +L  L  + +  N L+  I    F    +++  L L +N
Sbjct: 32  TELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLT-GIEPNAF-EGASHIQELQLGEN 88

Query: 350 NLNGSIPNSI-TNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARL 408
            +   I N +   +  L  L L  NQ+S  +                      P +F  L
Sbjct: 89  KIK-EISNKMFLGLHQLKTLNLYDNQIS-CVM---------------------PGSFEHL 125

Query: 409 NGLEVLDLSNN 419
           N L  L+L++N
Sbjct: 126 NSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 17/124 (13%)

Query: 145 SLASI-----TTLSRFAANQNKFSGSVPGGITRFLRNL---DLSYNKLLGVIP--IDLLS 194
            L  I        +    N N+       G+   L +L   +L  N+L G+ P   +  S
Sbjct: 19  GLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS 78

Query: 195 HPNLQTIDLSVNMLEGSLPQNM---SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELD 251
             ++Q + L  N ++  +   M      L  L L  N +   +   +F  L  LT L L 
Sbjct: 79  --HIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQI-SCVMPGSFEHLNSLTSLNLA 134

Query: 252 NNSF 255
           +N F
Sbjct: 135 SNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 9/109 (8%)

Query: 270 TLLNLAQNELNGSLPIQ--LGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSL 327
           T L L  NEL   +      G L  L  + L+ N+L+G  P+ F     +  + +  N +
Sbjct: 32  TELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90

Query: 328 SGSIPS--FLSNLTNLVNLNLRQNNLNGSIPNSI-TNMRSLIELQLGGN 373
              I +  F   L  L  LNL  N ++  +      ++ SL  L L  N
Sbjct: 91  K-EISNKMF-LGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 27/132 (20%), Positives = 42/132 (31%), Gaps = 31/132 (23%)

Query: 13  LNFSKNELVSLP---TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGF 69
           L  + NEL  +     F     L  L+   N L G     F+    ++ L L +NK    
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-- 91

Query: 70  LPINLGKTKALEELVLSGNAFHGEIPKGIADY-RNLTLIDLSANNLSGSVPDRI-GELSK 127
                                  EI   +      L  ++L  N +S  V       L+ 
Sbjct: 92  -----------------------EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNS 127

Query: 128 LEVLILSANNLD 139
           L  L L++N  +
Sbjct: 128 LTSLNLASNPFN 139

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 60.6 bits (147), Expect = 8e-10
 Identities = 39/210 (18%), Positives = 75/210 (35%), Gaps = 30/210 (14%)

Query: 568 FSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS--NSNVMTPLAYVL 625
            S  ++ +      Y IK +N  +   Q  +   +  E+  L KL   +  ++    Y +
Sbjct: 69  SSKVFQVLNEKKQIYAIKYVNLEEADNQ--TLDSYRNEIAYLNKLQQHSDKIIRLYDYEI 126

Query: 626 ASDSAYLFYEYAPKGTLFDVL--HGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILL 683
                Y+  E      L   L     ++        Y   +   + +  +H    + I+ 
Sbjct: 127 TDQYIYMVMECG-NIDLNSWLKKKKSID--PWERKSYWKNM--LEAVHTIH---QHGIVH 178

Query: 684 LDLSTRNIFL--KSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE--------- 732
            DL   N  +    LK   + D  +   + P  ++    +  G+V Y+PPE         
Sbjct: 179 SDLKPANFLIVDGMLK---LIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSR 235

Query: 733 --YAYTMRVTMAGNVYSFGVILLELLTGKT 760
                  +++   +V+S G IL  +  GKT
Sbjct: 236 ENGKSKSKISPKSDVWSLGCILYYMTYGKT 265

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 61.0 bits (148), Expect = 1e-09
 Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 28/167 (16%)

Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDS-----AYLFYEYAPKGTLFDVLHGCL--ENAL 654
              E + L ++ + +++    +V  +D       Y+  EY    +L       L    A+
Sbjct: 126 AMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQKLPVAEAI 185

Query: 655 DWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID--P 712
                    + +   L++LH   S  ++  DL   NI L    E Q+      K+ID   
Sbjct: 186 A------YLLEILPALSYLH---SIGLVYNDLKPENIMLT---EEQL------KLIDLGA 227

Query: 713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
                S   + G+ G+  PE   T   T+A ++Y+ G  L  L    
Sbjct: 228 VSRINSFGYLYGTPGFQAPEIVRT-GPTVATDIYTVGRTLAALTLDL 273

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 38/227 (16%), Positives = 81/227 (35%), Gaps = 35/227 (15%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFD--KELEVLGKLSNS-NVMTPLAY 623
           F + +K V    G  Y IK+     K    GS  + +  +E+     L    +V+   + 
Sbjct: 24  FGSVFKCVKRLDGCIYAIKRS----KKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSA 79

Query: 624 VLASDSAYLFYEYAPKGTLFDVL--HGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPI 681
               D   +  EY   G+L D +  +  + +    A    + + V +GL ++H   S  +
Sbjct: 80  WAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIH---SMSL 136

Query: 682 LLLDLSTRNIFLKSLKEPQIGDIE-----------LCKVID--PSKSTGSLSTVAGSVGY 728
           + +D+   NIF+     P     E           + K+ D        S     G   +
Sbjct: 137 VHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQVEEGDSRF 196

Query: 729 IPPE-----YAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAK 770
           +  E     Y +  +     ++++  + ++     +     G++  +
Sbjct: 197 LANEVLQENYTHLPKA----DIFALALTVVCAAGAEPLPRNGDQWHE 239

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 14/162 (8%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY 660
           KF +E  +L + S+ N++  +         Y+  E    G     L       L   +  
Sbjct: 158 KFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTE-GARLRVKTLL 216

Query: 661 SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLS 720
            +    A G+ +L    S   +  DL+ RN  +      +I D  + +          + 
Sbjct: 217 QMVGDAAAGMEYLE---SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEA-----DGVY 268

Query: 721 TVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
             +G +  +P     PE     R +   +V+SFG++L E  +
Sbjct: 269 AASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFS 310

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 52/286 (18%), Positives = 95/286 (33%), Gaps = 41/286 (14%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
            +  ++     +G  + IK  N    I  L       +E EVL KL++ N++  L  +  
Sbjct: 22  TANVFRGRHKKTGDLFAIKVFN---NISFLRPVDVQMREFEVLKKLNHKNIVK-LFAIEE 77

Query: 627 SDSAYLFY---EYAPKGTLFDVLHGCLENALDWASRYSIAVG----VAQGLAFLHGFTSN 679
             +        E+ P G+L+ VL    E +  +    S  +     V  G+  L     N
Sbjct: 78  ETTTRHKVLIMEFCPCGSLYTVLE---EPSNAYGLPESEFLIVLRDVVGGMNHLR---EN 131

Query: 680 PILLLDLSTRNIFLKSLKEPQ----IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE-YA 734
            I+  ++   NI     ++ Q    + D    + ++  +      ++ G+  Y+ P+ Y 
Sbjct: 132 GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQ---FVSLYGTEEYLHPDMYE 188

Query: 735 YTMRVTMAGNVY-------SFGVILLELLTGKT--AVNQGNELAKWVLRNSAQQDKLDHI 785
             +        Y       S GV      TG       +G    K V+           I
Sbjct: 189 RAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAI 248

Query: 786 LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN 831
                +       S  + V        S+S   +  +  VL  +L 
Sbjct: 249 SGVQKAENGPIDWSGDMPV------SCSLSRGLQVLLTPVLANILE 288

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 60.0 bits (145), Expect = 1e-09
 Identities = 30/233 (12%), Positives = 69/233 (29%), Gaps = 33/233 (14%)

Query: 584 IKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLA-YVLASDSAYLFYEYAPKGTL 642
           ++ L       Q   H +F    +++       ++            +  F     +  L
Sbjct: 127 LRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNL 186

Query: 643 FDVL-----HGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK 697
                    H     +L   +R  + + V + LA LH      ++   L   +I L    
Sbjct: 187 QTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGLVHTYLRPVDIVLDQRG 243

Query: 698 EPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEY-----------AYTMRVTMAGNVY 746
              +   E           G+    + S G+ PPE                 +T + + +
Sbjct: 244 GVFLTGFEH------LVRDGARVVSSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAW 297

Query: 747 SFGVILLELLTGKT--AVNQGNELAKWVLRNSAQ-----QDKLDHILDFNVSR 792
           + G+++  +         +     ++W+ R+        +  L+  L +    
Sbjct: 298 ALGLVIYWIWCADLPITKDAALGGSEWIFRSCKNIPQPVRALLEGFLRYPKED 350

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 38/145 (26%)

Query: 234 IPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGIL 293
           IP          T L LD N FT ++P++L + + LTL++L+ N                
Sbjct: 29  IPRDV-------TELYLDGNQFT-LVPKELSNYKHLTLIDLSNN---------------- 64

Query: 294 QVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPS--FLSNLTNLVNLNLRQNNL 351
                +++ LS      FS +  L T+ +S+N L   IP   F   L +L  L+L  N++
Sbjct: 65  -----RISTLS---NQSFSNMTQLLTLILSYNRLR-CIPPRTF-DGLKSLRLLSLHGNDI 114

Query: 352 NGSIPNSI-TNMRSLIELQLGGNQL 375
           +  +P     ++ +L  L +G N L
Sbjct: 115 S-VVPEGAFNDLSALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 24/131 (18%)

Query: 159 QNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLP----Q 214
            NK    +P GI R +  L L  N+   ++P +L ++ +L  IDLS N +  +L      
Sbjct: 18  SNKGLKVLPKGIPRDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFS 75

Query: 215 NMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGS--------C 266
           NM+  L+ L L  N L   IP  TF  L+ L  L L  N         +           
Sbjct: 76  NMT-QLLTLILSYNRL-RCIPPRTFDGLKSLRLLSLHGN--------DISVVPEGAFNDL 125

Query: 267 RSLTLLNLAQN 277
            +L+ L +  N
Sbjct: 126 SALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 29/130 (22%)

Query: 13  LNFSKNELVSLPT-FNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLP 71
           L    N+   +P   + +  L ++D S+N ++   N  F  +  L +L LS N+      
Sbjct: 36  LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR---- 91

Query: 72  INLGKTKALEELVLSGNAFHGEIPKGIADY-RNLTLIDLSANNLSGSVPDRI-GELSKLE 129
                                 IP    D  ++L L+ L  N++S  VP+    +LS L 
Sbjct: 92  ---------------------CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALS 129

Query: 130 VLILSANNLD 139
            L + AN L 
Sbjct: 130 HLAIGANPLY 139

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 27/120 (22%)

Query: 330 SIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIA 389
            +P  +    ++  L L  N     +P  ++N + L  + L  N++S T+          
Sbjct: 24  VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLS--------- 70

Query: 390 LNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQ-LLAQMPTLTQLLLTNNQLSGV 448
                         +F+ +  L  L LS NR    IP      + +L  L L  N +S V
Sbjct: 71  ------------NQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISVV 117

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 33/141 (23%)

Query: 307 IPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSI-TNMRSL 365
           IP   ++L L        N  +  +P  LSN  +L  ++L  N ++ ++ N   +NM  L
Sbjct: 29  IPRDVTELYL------DGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQL 80

Query: 366 IELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEI 425
           + L L  N+L   IP                     P TF  L  L +L L  N  S  +
Sbjct: 81  LTLILSYNRLR-CIP---------------------PRTFDGLKSLRLLSLHGNDIS-VV 117

Query: 426 PQ-LLAQMPTLTQLLLTNNQL 445
           P+     +  L+ L +  N L
Sbjct: 118 PEGAFNDLSALSHLAIGANPL 138

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 29/181 (16%), Positives = 64/181 (35%), Gaps = 18/181 (9%)

Query: 590 SDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHG 648
           +DKI     +  F  EL+++  + N   +T    ++ +    Y+ YEY    ++      
Sbjct: 78  NDKISIKSKYDDFKNELQIITDIKNEYCLT-CEGIITNYDEVYIIYEYMENDSILKFDEY 136

Query: 649 CLENALDWASRYSIAVG------VAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIG 702
                 ++     I V       V    +++H      I   D+   NI +      ++ 
Sbjct: 137 FFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIH--NEKNICHRDVKPSNILMDKNGRVKLS 194

Query: 703 DIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGN---VYSFGVILLELLTGK 759
           D    + +        +    G+  ++PPE  ++   +  G    ++S G+ L  +    
Sbjct: 195 DFGESEYMV----DKKIKGSRGTYEFMPPE-FFSNESSYNGAKVDIWSLGICLYVMFYNV 249

Query: 760 T 760
            
Sbjct: 250 V 250

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 39/210 (18%), Positives = 75/210 (35%), Gaps = 30/210 (14%)

Query: 568 FSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS--NSNVMTPLAYVL 625
            S  ++ +      Y IK +N  +   Q  +   +  E+  L KL   +  ++    Y +
Sbjct: 22  SSKVFQVLNEKKQIYAIKYVNLEEADNQ--TLDSYRNEIAYLNKLQQHSDKIIRLYDYEI 79

Query: 626 ASDSAYLFYEYAPKGTLFDVL--HGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILL 683
                Y+  E      L   L     ++        Y   +   + +  +H    + I+ 
Sbjct: 80  TDQYIYMVMECG-NIDLNSWLKKKKSID--PWERKSYWKNM--LEAVHTIH---QHGIVH 131

Query: 684 LDLSTRNIFLK--SLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE--------- 732
            DL   N  +    LK   + D  +   + P  ++    +  G+V Y+PPE         
Sbjct: 132 SDLKPANFLIVDGMLK---LIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSR 188

Query: 733 --YAYTMRVTMAGNVYSFGVILLELLTGKT 760
                  +++   +V+S G IL  +  GKT
Sbjct: 189 ENGKSKSKISPKSDVWSLGCILYYMTYGKT 218

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 59.5 bits (144), Expect = 3e-09
 Identities = 42/204 (20%), Positives = 79/204 (38%), Gaps = 32/204 (15%)

Query: 567 RFSTYYKAV-MPSGMSY---FIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLA 622
            F   ++     +G ++   F+   + SDK           KE++ +  L +  ++    
Sbjct: 169 AFGVVHRVTERATGNNFAAKFVMTPHESDK-------ETVRKEIQTMSVLRHPTLVNLHD 221

Query: 623 YVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYS---IAVGVAQ---GLAFLHGF 676
                +   + YE+   G LF+ +        D  ++ S       + Q   GL  +H  
Sbjct: 222 AFEDDNEMVMIYEFMSGGELFEKV-------ADEHNKMSEDEAVEYMRQVCKGLCHMH-- 272

Query: 677 TSNPILLLDLSTRNIFLKSLKEPQI--GDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYA 734
             N  + LDL   NI   + +  ++   D  L   +DP +S   +    G+  +  PE A
Sbjct: 273 -ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQS---VKVTTGTAEFAAPEVA 328

Query: 735 YTMRVTMAGNVYSFGVILLELLTG 758
               V    +++S GV+   LL+G
Sbjct: 329 EGKPVGYYTDMWSVGVLSYILLSG 352

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 57.6 bits (140), Expect = 5e-09
 Identities = 44/175 (25%), Positives = 73/175 (41%), Gaps = 14/175 (8%)

Query: 590 SDKIFQLGSHHKFDKELEVLGKLSNSNVM----TPLAYVLASDSAYLFYEYAPKGTLFDV 645
            D  F      +F +E +    L++  ++    T  A   A    Y+  EY    TL D+
Sbjct: 51  RDPSFY----LRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDI 106

Query: 646 LHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIE 705
           +H   E  +       +     Q L F H    N I+  D+   NI + +    ++ D  
Sbjct: 107 VHT--EGPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFG 161

Query: 706 LCKVIDPSKSTG-SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
           + + I  S ++    + V G+  Y+ PE A    V    +VYS G +L E+LTG+
Sbjct: 162 IARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGE 216

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 56.9 bits (138), Expect = 9e-09
 Identities = 46/203 (22%), Positives = 78/203 (38%), Gaps = 23/203 (11%)

Query: 567 RFSTYYKAV-MPSGMSY---FIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLA 622
           +F+   K     +G+ Y   FIKK        +  S  + ++E+ +L ++ + NV+T   
Sbjct: 24  QFAIVKKCREKSTGLEYAAKFIKKRQSRAS-RRGVSREEIEREVSILRQVLHHNVITLHD 82

Query: 623 YVLASDSAYLFYEYAPKGTLFD--VLHGCL-ENALDWASRYSIAVGVAQGLAFLHGFTSN 679
                    L  E    G LFD       L E     A+ +   +    G+ +LH   + 
Sbjct: 83  VYENRTDVVLILELVSGGELFDFLAQKESLSEEE---ATSFIKQI--LDGVNYLH---TK 134

Query: 680 PILLLDLSTRNIFLKSLKEPQ----IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY 735
            I   DL   NI L     P     + D  L   I+          + G+  ++ PE   
Sbjct: 135 KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVE---FKNIFGTPEFVAPEIVN 191

Query: 736 TMRVTMAGNVYSFGVILLELLTG 758
              + +  +++S GVI   LL+G
Sbjct: 192 YEPLGLEADMWSIGVITYILLSG 214

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 20/198 (10%)

Query: 568 FSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           F          +G    +K ++   ++ Q        +E+++L +L + N+M    +   
Sbjct: 39  FGEVILCKDKITGQECAVKVIS-KRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFED 97

Query: 627 SDSAYLFYEYAPKGTLFD--VLHGCL-ENALDWASRYSIAVGVAQGLAFLHGFTSNPILL 683
               YL  E    G LFD  +      E     A+R  I   V  G+ ++H    N I+ 
Sbjct: 98  KGYFYLVGEVYTGGELFDEIISRKRFSEVD---AAR--IIRQVLSGITYMH---KNKIVH 149

Query: 684 LDLSTRNIFLKSLKE---PQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVT 740
            DL   N+ L+S  +    +I D  L    + SK    +    G+  YI PE        
Sbjct: 150 RDLKPENLLLESKSKDANIRIIDFGLSTHFEASKK---MKDKIGTAYYIAPE-VLHGTYD 205

Query: 741 MAGNVYSFGVILLELLTG 758
              +V+S GVIL  LL+G
Sbjct: 206 EKCDVWSTGVILYILLSG 223

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 36/200 (18%), Positives = 71/200 (35%), Gaps = 24/200 (12%)

Query: 567 RFSTYYKAV-MPSGMSY---FIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLA 622
            F   ++ V   +G  +   FI      DK       +    E+ ++ +L +  ++    
Sbjct: 63  AFGVVHRCVEKATGRVFVAKFINTPYPLDK-------YTVKNEISIMNQLHHPKLINLHD 115

Query: 623 YVLASDSAYLFYEYAPKGTLFD--VLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNP 680
                    L  E+   G LFD         +  +    Y       +GL  +H    + 
Sbjct: 116 AFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAE-VINYMRQA--CEGLKHMH---EHS 169

Query: 681 ILLLDLSTRNIFLKSLKEPQI--GDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMR 738
           I+ LD+   NI  ++ K   +   D  L   ++P +    +     +  +  PE      
Sbjct: 170 IVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEI---VKVTTATAEFAAPEIVDREP 226

Query: 739 VTMAGNVYSFGVILLELLTG 758
           V    ++++ GV+   LL+G
Sbjct: 227 VGFYTDMWAIGVLGYVLLSG 246

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 40/132 (30%), Positives = 52/132 (39%), Gaps = 21/132 (15%)

Query: 159 QNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQ---N 215
            ++   SVP GI      LDL  N L  +         +L  + L  N L+ SLP    N
Sbjct: 15  YSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFN 73

Query: 216 MSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSC--------R 267
              +L  L L TN L   +P+  F  L +L  L L+ N        QL S          
Sbjct: 74  KLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNTN--------QLQSLPDGVFDKLT 124

Query: 268 SLTLLNLAQNEL 279
            L  L L QN+L
Sbjct: 125 QLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 45/147 (30%), Positives = 65/147 (44%), Gaps = 19/147 (12%)

Query: 117 SVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRN 176
           SVP  I   ++   L L  N+L          +T+L++     NK   S+P G+   L +
Sbjct: 21  SVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTS 77

Query: 177 LD---LSYNKL----LGVIPIDLLSHPNLQTIDLSVNMLEGSLPQ---NMSPNLVRLRLG 226
           L    LS N+L     GV   D L+   L+ + L+ N L+ SLP    +    L  LRL 
Sbjct: 78  LTYLNLSTNQLQSLPNGVF--DKLT--QLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLY 132

Query: 227 TNLLIGEIPSATFTSLEKLTYLELDNN 253
            N L   +P   F  L  L Y+ L +N
Sbjct: 133 QNQL-KSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 45/137 (32%), Positives = 60/137 (43%), Gaps = 14/137 (10%)

Query: 11  KLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNG 68
             L+   N L SLP   F+    L  L    N L    N  F++L SL  LNLS N+   
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 69  FLPI----NLGKTKALEELVLSGNAFHGEIPKGIAD-YRNLTLIDLSANNLSGSVPDRI- 122
            LP      L +   L+EL L+ N     +P G+ D    L  + L  N L  SVPD + 
Sbjct: 91  -LPNGVFDKLTQ---LKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVF 144

Query: 123 GELSKLEVLILSANNLD 139
             L+ L+ + L  N  D
Sbjct: 145 DRLTSLQYIWLHDNPWD 161

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 14/134 (10%)

Query: 294 QVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNG 353
             ++L+ N L       F +L  L+ + +  N L        + LT+L  LNL  N L  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ- 89

Query: 354 SIPN----SITNMRSLIELQLGGNQLSGTIPM----MPPRLQIALNLSSNLFEGPIPTTF 405
           S+PN     +T    L EL L  NQL  ++P        +L+  L L  N  +      F
Sbjct: 90  SLPNGVFDKLTQ---LKELALNTNQLQ-SLPDGVFDKLTQLKD-LRLYQNQLKSVPDGVF 144

Query: 406 ARLNGLEVLDLSNN 419
            RL  L+ + L +N
Sbjct: 145 DRLTSLQYIWLHDN 158

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 55.6 bits (135), Expect = 2e-08
 Identities = 46/203 (22%), Positives = 80/203 (39%), Gaps = 23/203 (11%)

Query: 567 RFSTYYKAV-MPSGMSY---FIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLA 622
           +F+   K     +G  Y   FIKK   S     + S  + ++E+ +L ++ + N++T   
Sbjct: 17  QFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGV-SREEIEREVNILREIRHPNIITLHD 75

Query: 623 YVLASDSAYLFYEYAPKGTLFD--VLHGCL-ENALDWASRYSIAVGVAQGLAFLHGFTSN 679
                    L  E    G LFD       L E+    A+++   +    G+ +LH   S 
Sbjct: 76  IFENKTDVVLILELVSGGELFDFLAEKESLTEDE---ATQFLKQI--LDGVHYLH---SK 127

Query: 680 PILLLDLSTRNIFLKSLKEPQ----IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY 735
            I   DL   NI L     P     + D  +   I+          + G+  ++ PE   
Sbjct: 128 RIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNE---FKNIFGTPEFVAPEIVN 184

Query: 736 TMRVTMAGNVYSFGVILLELLTG 758
              + +  +++S GVI   LL+G
Sbjct: 185 YEPLGLEADMWSIGVITYILLSG 207

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 19/167 (11%)

Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E +V+ KL +  ++   A V++ +  Y+  EY  KG+L D L G     L   
Sbjct: 222 SPEAFLQEAQVMKKLRHEKLVQLYA-VVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLP 280

Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP--SKS 715
               +A  +A G+A++        +  DL   NI         +G+  +CKV D   ++ 
Sbjct: 281 QLVDMAAQIASGMAYVE---RMNYVHRDLRAANIL--------VGENLVCKVADFGLARL 329

Query: 716 TGSLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
                  A      P     PE A   R T+  +V+SFG++L EL T
Sbjct: 330 IEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT 376

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 48/203 (23%), Positives = 79/203 (38%), Gaps = 30/203 (14%)

Query: 567 RFSTYYKAVM-PSGMSY---FIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLA 622
           RF   +K     +G+      IK     DK        +   E+ V+ +L ++N++    
Sbjct: 101 RFGQVHKCEETATGLKLAAKIIKTRGMKDK-------EEVKNEISVMNQLDHANLIQLYD 153

Query: 623 YVLASDSAYLFYEYAPKGTLFD--VLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNP 680
              + +   L  EY   G LFD  +        LD    +   +   +G+  +H      
Sbjct: 154 AFESKNDIVLVMEYVDGGELFDRIIDESYNLTELD-TILFMKQI--CEGIRHMH---QMY 207

Query: 681 ILLLDLSTRNIFLKSLKEPQI--GDIELCKVIDPSKSTGSLSTVAGSVGYIPPE---YAY 735
           IL LDL   NI   +    QI   D  L +   P +    L    G+  ++ PE   Y +
Sbjct: 208 ILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK---LKVNFGTPEFLAPEVVNYDF 264

Query: 736 TMRVTMAGNVYSFGVILLELLTG 758
              V+   +++S GVI   LL+G
Sbjct: 265 ---VSFPTDMWSVGVIAYMLLSG 284

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 57.0 bits (137), Expect = 2e-08
 Identities = 42/214 (19%), Positives = 79/214 (36%), Gaps = 42/214 (19%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSN------VMTP 620
           F    + +   +G    IK+     +     +  ++  E++++ KL++ N      V   
Sbjct: 27  FGYVLRWIHQDTGEQVAIKQCR---QELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDG 83

Query: 621 LAYVLASDSAYLFYEYAPKGTLFDVL--HGCLENALDWASRYSIAVGVAQGLAFLHGFTS 678
           L  +  +D   L  EY   G L   L          +   R ++   ++  L +LH    
Sbjct: 84  LQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIR-TLLSDISSALRYLH---E 139

Query: 679 NPI---------LLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYI 729
           N I         ++L    + +  K      I D+   K +D        +   G++ Y+
Sbjct: 140 NRIIHRDLKPENIVLQPGPQRLIHK------IIDLGYAKELDQ---GELCTEFVGTLQYL 190

Query: 730 PPEY----AYTMRVTMAGNVYSFGVILLELLTGK 759
            PE      YT+ V    + +SFG +  E +TG 
Sbjct: 191 APELLEQKKYTVTV----DYWSFGTLAFECITGF 220

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 10/128 (7%)

Query: 320 MNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLS--G 377
           + ++   +        +N      L+LR   +   I N    +     +    N++    
Sbjct: 2   VKLTAELIE-QAAQ-YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLD 58

Query: 378 TIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQL--LAQMPTL 435
             P++  RL+  L +++N            L  L  L L+NN    E+  L  LA + +L
Sbjct: 59  GFPLLR-RLKT-LLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSL 115

Query: 436 TQLLLTNN 443
           T L +  N
Sbjct: 116 TYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 1/82 (1%)

Query: 8   DGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFN 67
           D    ++FS NE+  L  F     L+ L  ++N +          L  L  L L+ N   
Sbjct: 42  DQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

Query: 68  GFLPI-NLGKTKALEELVLSGN 88
               +  L   K+L  L +  N
Sbjct: 102 ELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 31/152 (20%)

Query: 223 LRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGS 282
           ++L   L I +     +T+  +   L+L       +I     +      ++ + NE+   
Sbjct: 2   VKLTAEL-IEQAAQ--YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-- 55

Query: 283 LPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLV 342
                              KL G     F  L+ L T+ ++ N +          L +L 
Sbjct: 56  -------------------KLDG-----FPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91

Query: 343 NLNLRQNNLNG-SIPNSITNMRSLIELQLGGN 373
            L L  N+L      + + +++SL  L +  N
Sbjct: 92  ELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 6/126 (4%)

Query: 13  LNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPI 72
           +  +   +     +        LD     +    NL    L    +++ S N+       
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKL--D 58

Query: 73  NLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLS--GSVPDRIGELSKLEV 130
                + L+ L+++ N              +LT + L+ N+L   G + D +  L  L  
Sbjct: 59  GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTY 117

Query: 131 LILSAN 136
           L +  N
Sbjct: 118 LCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 32/111 (28%), Positives = 42/111 (37%), Gaps = 11/111 (9%)

Query: 174 LRNLDLSYNKLLGVIPIDLLSH--PNLQTIDLSVNMLE--GSLPQNMSPNLVRLRLGTNL 229
            R LDL   K+     I+ L         ID S N +      P      L  L +  N 
Sbjct: 21  DRELDLRGYKI---PVIENLGATLDQFDAIDFSDNEIRKLDGFPLL--RRLKTLLVNNNR 75

Query: 230 LIGEIPSATFTSLEKLTYLELDNNSFTGM-IPQQLGSCRSLTLLNLAQNEL 279
            I  I      +L  LT L L NNS   +     L S +SLT L + +N +
Sbjct: 76  -ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 56.2 bits (135), Expect = 2e-08
 Identities = 18/140 (12%), Positives = 37/140 (26%), Gaps = 14/140 (10%)

Query: 631 YLFYEYAPKGTLFDVL-----HGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLD 685
             F     +  L         H     +L   +R  + + V + LA LH      ++   
Sbjct: 180 RFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGLVHTY 236

Query: 686 LSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY-----TMRVT 740
           L   +I L       +   E       S  +  +                        +T
Sbjct: 237 LRPVDIVLDQRGGVFLTGFEHLVRDGASAVS-PIGRGFAPPETTAERMLPFGQHHPTLMT 295

Query: 741 MAGNVYSFGVILLELLTGKT 760
            A + ++ G+ +  +     
Sbjct: 296 FAFDTWTLGLAIYWIWCADL 315

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 19/167 (11%)

Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E +V+ KL +  ++   A V++ +  Y+  EY  KG+L D L G     L   
Sbjct: 305 SPEAFLQEAQVMKKLRHEKLVQLYA-VVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLP 363

Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP--SKS 715
               +A  +A G+A++        +  DL   NI         +G+  +CKV D   ++ 
Sbjct: 364 QLVDMAAQIASGMAYVE---RMNYVHRDLRAANIL--------VGENLVCKVADFGLARL 412

Query: 716 TGSLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
                  A      P     PE A   R T+  +V+SFG++L EL T
Sbjct: 413 IEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT 459

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 23/203 (11%)

Query: 567 RFSTYYKAV-MPSGMSY---FIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLA 622
           +F+   K     +G+ Y   FIKK         +    + ++E+ +L ++ + N++T   
Sbjct: 24  QFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGV-CREEIEREVSILRQVLHPNIITLHD 82

Query: 623 YVLASDSAYLFYEYAPKGTLFD--VLHGCL-ENALDWASRYSIAVGVAQGLAFLHGFTSN 679
                    L  E    G LFD       L E     A+ +   +    G+ +LH   + 
Sbjct: 83  VYENRTDVVLILELVSGGELFDFLAQKESLSEEE---ATSFIKQI--LDGVNYLH---TK 134

Query: 680 PILLLDLSTRNIFLKSLKEPQ----IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY 735
            I   DL   NI L     P     + D  L   I+          + G+  ++ PE   
Sbjct: 135 KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVE---FKNIFGTPEFVAPEIVN 191

Query: 736 TMRVTMAGNVYSFGVILLELLTG 758
              + +  +++S GVI   LL+G
Sbjct: 192 YEPLGLEADMWSIGVITYILLSG 214

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 55.9 bits (135), Expect = 3e-08
 Identities = 35/167 (20%), Positives = 66/167 (39%), Gaps = 18/167 (10%)

Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
              +F KE  V+ ++ + N++  L         Y+  E+   G L D L  C    +   
Sbjct: 259 EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAV 318

Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID--PSKS 715
               +A  ++  + +L        +  +L+ RN          +G+  L KV D   S+ 
Sbjct: 319 VLLYMATQISSAMEYLE---KKNFIHRNLAARNCL--------VGENHLVKVADFGLSRL 367

Query: 716 TGSLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
               +  A +    P     PE     + ++  +V++FGV+L E+ T
Sbjct: 368 MTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 414

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 49/203 (24%), Positives = 78/203 (38%), Gaps = 23/203 (11%)

Query: 567 RFSTYYKAV-MPSGMSY---FIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLA 622
           +F+   K     +G+ Y   FIKK         + S    ++E+ +L ++ + NV+T   
Sbjct: 23  QFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGV-SREDIEREVSILKEIQHPNVITLHE 81

Query: 623 YVLASDSAYLFYEYAPKGTLFD--VLHGCL-ENALDWASRYSIAVGVAQGLAFLHGFTSN 679
                    L  E    G LFD       L E     A+ +   +    G+ +LH   S 
Sbjct: 82  VYENKTDVILILELVAGGELFDFLAEKESLTEEE---ATEFLKQI--LNGVYYLH---SL 133

Query: 680 PILLLDLSTRNIFLKSLKEPQ----IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY 735
            I   DL   NI L     P+    I D  L   ID          + G+  ++ PE   
Sbjct: 134 QIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNE---FKNIFGTPEFVAPEIVN 190

Query: 736 TMRVTMAGNVYSFGVILLELLTG 758
              + +  +++S GVI   LL+G
Sbjct: 191 YEPLGLEADMWSIGVITYILLSG 213

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 32/171 (18%), Positives = 58/171 (33%), Gaps = 10/171 (5%)

Query: 590 SDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGC 649
           SD +F+     +  +E    G+L   +V+    +       Y+         L  +L   
Sbjct: 73  SDPVFR----TRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVDMRLINGVDLAAMLRR- 127

Query: 650 LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV 709
            +  L      +I   +   L   H   +      D+   NI + +     + D  +   
Sbjct: 128 -QGPLAPPRAVAIVRQIGSALDAAH---AAGATHRDVKPENILVSADDFAYLVDFGIASA 183

Query: 710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKT 760
               K T  L    G++ Y+ PE       T   ++Y+   +L E LTG  
Sbjct: 184 TTDEKLT-QLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSP 233

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 54.5 bits (132), Expect = 5e-08
 Identities = 51/202 (25%), Positives = 80/202 (39%), Gaps = 31/202 (15%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           FS  +      +G  + +K +  S            + E+ VL K+ + N++T      +
Sbjct: 22  FSEVFLVKQRLTGKLFALKCIKKS----PAFRDSSLENEIAVLKKIKHENIVTLEDIYES 77

Query: 627 SDSAYLFYEYAPKGTLFD--VLHGCL-ENALDWASRYSIAVGVAQGLAFLHGFTSNPILL 683
           +   YL  +    G LFD  +  G   E     AS   +   V   + +LH    N I+ 
Sbjct: 78  TTHYYLVMQLVSGGELFDRILERGVYTEKD---ASL--VIQQVLSAVKYLH---ENGIVH 129

Query: 684 LDLSTRNIFLKSLKEP---QIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE----YAYT 736
            DL   N+   + +E     I D  L K+       G +ST  G+ GY+ PE      Y+
Sbjct: 130 RDLKPENLLYLTPEENSKIMITDFGLSKMEQN----GIMSTACGTPGYVAPEVLAQKPYS 185

Query: 737 MRVTMAGNVYSFGVILLELLTG 758
             V    + +S GVI   LL G
Sbjct: 186 KAV----DCWSIGVITYILLCG 203

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 43/167 (25%), Positives = 67/167 (40%), Gaps = 15/167 (8%)

Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLAS--DSAYLFYEYAPKGTLFDVLHGCLENALD 655
               F +E+++L  L +  ++            S  L  EY P G L D L       LD
Sbjct: 67  QQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRH-RARLD 125

Query: 656 WASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS 715
            +     +  + +G+ +L    S   +  DL+ RNI ++S    +I D  L K++   K 
Sbjct: 126 ASRLLLYSSQICKGMEYLG---SRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKD 182

Query: 716 TGSLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
                 V    G  P     PE       +   +V+SFGV+L EL T
Sbjct: 183 Y----YVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFT 225

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 18/180 (10%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSA--YLFYEYAPKGTLFDVLHGCLENALDWAS 658
            + +E+++L  L + +++        + +A   L  EY P G+L D L     +++  A 
Sbjct: 79  GWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLP---RHSIGLAQ 135

Query: 659 RYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS 718
               A  + +G+A+LH   +   +  DL+ RN+ L + +  +IGD  L K +        
Sbjct: 136 LLLFAQQICEGMAYLH---AQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEY-- 190

Query: 719 LSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWV 772
                   G  P     PE     +   A +V+SFGV L ELLT   ++ +   +  + +
Sbjct: 191 --YRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELI 248

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 8   DGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFN 67
             L+ L+     L+S+        L+ L+ S N + G +++  ++L +L  LNLS NK  
Sbjct: 49  VNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

Query: 68  GFLPI-NLGKTKALEELVLSGN 88
               +  L K + L+ L L   
Sbjct: 109 DISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.4 bits (118), Expect = 5e-07
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 8/115 (6%)

Query: 337 NLTNLVNLNLRQNNLN-GSIPNSITNMRSLIELQLGGNQLS--GTIPMMPPRLQIALNLS 393
               +  L L     N G I        +L  L L    L     +P +P +L+  L LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLP-KLKK-LELS 79

Query: 394 SNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQL--LAQMPTLTQLLLTNNQLS 446
            N   G +     +L  L  L+LS N+   +I  L  L ++  L  L L N +++
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 8e-06
 Identities = 28/138 (20%), Positives = 44/138 (31%), Gaps = 28/138 (20%)

Query: 241 SLEKLTYLELDNNSFT-GMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQ 299
           +   +  L LDN     G I        +L  L+L                         
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV---------------------G 60

Query: 300 LNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNG-SIPNS 358
           L  +S        +L  L  + +S N + G +      L NL +LNL  N L   S    
Sbjct: 61  LISVSN-----LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP 115

Query: 359 ITNMRSLIELQLGGNQLS 376
           +  +  L  L L   +++
Sbjct: 116 LKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 27/138 (19%), Positives = 45/138 (32%), Gaps = 28/138 (20%)

Query: 48  LQFDELVSLKSLNLSKNKFNGFLPINLGKT-KALEELVLSGNAFHGEIPK--GIADYRNL 104
           L+     +++ L L   K N      L      LE L L        +     +     L
Sbjct: 18  LRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV----GLISVSNLPKLPKL 73

Query: 105 TLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSG 164
             ++LS N + G +     +L  L  L LS N L       ++++  L +          
Sbjct: 74  KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL-----KDISTLEPLKKL--------- 119

Query: 165 SVPGGITRFLRNLDLSYN 182
                    L++LDL   
Sbjct: 120 -------ECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 5/105 (4%)

Query: 10  LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGF 69
           L L N   N+         F  LE L   +  L    NL   +L  LK L LS+N+  G 
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP--KLPKLKKLELSENRIFGG 86

Query: 70  LPINLGKTKALEELVLSGNAFH--GEIPKGIADYRNLTLIDLSAN 112
           L +   K   L  L LSGN       + + +     L  +DL   
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 54.3 bits (131), Expect = 6e-08
 Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 15/163 (9%)

Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASD--SAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
           F++E+E+L  L + N++       ++   +  L  EY P G+L D L    +  +D    
Sbjct: 89  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH-KERIDHIKL 147

Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
                 + +G+ +L    +   +  DL+TRNI +++    +IGD  L KV+   K     
Sbjct: 148 LQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEY--- 201

Query: 720 STVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
                  G  P     PE     + ++A +V+SFGV+L EL T
Sbjct: 202 -YKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 243

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 55.1 bits (133), Expect = 6e-08
 Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 15/165 (9%)

Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F  E  V+  L +  ++   A V+  +  Y+  E+  KG+L D L     +     
Sbjct: 226 SVEAFLAEANVMKTLQHDKLVKLHA-VVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLP 284

Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
                +  +A+G+AF+        +  DL   NI + +    +I D  L +VI+ ++ T 
Sbjct: 285 KLIDFSAQIAEGMAFI---EQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTA 341

Query: 718 SLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
                       P     PE       T+  +V+SFG++L+E++T
Sbjct: 342 R------EGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVT 380

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 15/163 (9%)

Query: 602 FDKELEVLGKLSNSNVMTPLAYVLAS--DSAYLFYEYAPKGTLFDVLHGCLENALDWASR 659
           F++E+E+L  L + N++       ++   +  L  EY P G+L D L    +  +D    
Sbjct: 58  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH-KERIDHIKL 116

Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
                 + +G+ +L    +   +  DL+TRNI +++    +IGD  L KV+   K     
Sbjct: 117 LQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEF--- 170

Query: 720 STVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
                  G  P     PE     + ++A +V+SFGV+L EL T
Sbjct: 171 -FKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 212

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.6 bits (124), Expect = 6e-08
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 8   DGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFN 67
           + L+ L+     L S+        L+ L+ S N ++G + +  ++  +L  LNLS NK  
Sbjct: 42  EELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

Query: 68  GFLPI-NLGKTKALEELVLSGN 88
               I  L K + L+ L L   
Sbjct: 102 DLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 335 LSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLS--GTIPMMPPRLQIALNL 392
            S++  LV L+  ++N  G +         L  L      L+    +P +  +L+  L L
Sbjct: 16  PSDVKELV-LDNSRSN-EGKLEGLTDEFEELEFLSTINVGLTSIANLPKLN-KLKK-LEL 71

Query: 393 SSNLFEGPIPTTFARLNGLEVLDLSNNRFSG-EIPQLLAQMPTLTQLLLTNN 443
           S N   G +     +   L  L+LS N+       + L ++  L  L L N 
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 24/135 (17%), Positives = 41/135 (30%), Gaps = 28/135 (20%)

Query: 241 SLEKLTYLELDNNSFT-GMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQ 299
           +   +  L LDN+    G +         L  L+                          
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV---------------------G 53

Query: 300 LNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNG-SIPNS 358
           L  ++        +L  L  + +S N +SG +        NL +LNL  N +   S    
Sbjct: 54  LTSIAN-----LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP 108

Query: 359 ITNMRSLIELQLGGN 373
           +  + +L  L L   
Sbjct: 109 LKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 27/138 (19%), Positives = 45/138 (32%), Gaps = 28/138 (20%)

Query: 48  LQFDELVSLKSLNLSKNKFNGFLPINLGKT-KALEELVLSGNAFHGEIPK--GIADYRNL 104
           L+      +K L L  ++ N      L    + LE L          +     +     L
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV----GLTSIANLPKLNKL 66

Query: 105 TLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSG 164
             ++LS N +SG +     +   L  L LS N +       L++I  L +          
Sbjct: 67  KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI-----KDLSTIEPLKKL--------- 112

Query: 165 SVPGGITRFLRNLDLSYN 182
                    L++LDL   
Sbjct: 113 -------ENLKSLDLFNC 123

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 52/273 (19%), Positives = 85/273 (31%), Gaps = 49/273 (17%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFD--KELEVLGKLSNS-NVMTPLAY 623
           +   +K      G  Y +K+          G   +     E+    K+      +     
Sbjct: 70  YGEVFKVRSKEDGRLYAVKRS----MSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQA 125

Query: 624 VLASDSAYLFYEYAPKGTLFDVL---HGCLENALDWASRYSIAVGVAQGLAFLHGFTSNP 680
                  YL  E     +L          L  A  W             LA LH   S  
Sbjct: 126 WEEGGILYLQTELC-GPSLQQHCEAWGASLPEAQVW----GYLRDTLLALAHLH---SQG 177

Query: 681 ILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE-----YAY 735
           ++ LD+   NIFL      ++GD  L   +    + G+     G   Y+ PE     Y  
Sbjct: 178 LVHLDVKPANIFLGPRGRCKLGDFGLLVELG---TAGAGEVQEGDPRYMAPELLQGSY-- 232

Query: 736 TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSL 795
                 A +V+S G+ +LE+       + G    +  LR      +    L       S 
Sbjct: 233 ----GTAADVFSLGLTILEVACNMELPHGGEGWQQ--LRQGYLPPEFTAGL-------SS 279

Query: 796 AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM 828
            +RS    VL      +   P+ R   +++L +
Sbjct: 280 ELRS----VLV---MMLEPDPKLRATAEALLAL 305

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 53.8 bits (130), Expect = 8e-08
 Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 18/167 (10%)

Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
              +F KE  V+ ++ + N++  L         Y+  E+   G L D L  C    +   
Sbjct: 52  EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAV 111

Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID--PSKS 715
               +A  ++  + +L        +  DL+ RN          +G+  L KV D   S+ 
Sbjct: 112 VLLYMATQISSAMEYL---EKKNFIHRDLAARNCL--------VGENHLVKVADFGLSRL 160

Query: 716 TGSLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
               +  A +    P     PE     + ++  +V++FGV+L E+ T
Sbjct: 161 MTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 207

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 54.7 bits (132), Expect = 9e-08
 Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 27/202 (13%)

Query: 568 FSTYYKAVM-PSGMSY---FIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAY 623
           +          + +      I+K + S       S+ K  +E+ VL  L + N+M    +
Sbjct: 50  YGEVLLCRDKVTHVERAIKIIRKTSVSTS-----SNSKLLEEVAVLKLLDHPNIMKLYDF 104

Query: 624 VLASDSAYLFYEYAPKGTLFD--VLHGCL-ENALDWASRYSIAVGVAQGLAFLHGFTSNP 680
                + YL  E    G LFD  +      E     A+   I   V  G+ +LH    + 
Sbjct: 105 FEDKRNYYLVMECYKGGELFDEIIHRMKFNEVD---AAV--IIKQVLSGVTYLH---KHN 156

Query: 681 ILLLDLSTRNIFLKSLKE---PQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTM 737
           I+  DL   N+ L+S ++    +I D  L  V +  K    +    G+  YI PE     
Sbjct: 157 IVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKK---MKERLGTAYYIAPE-VLRK 212

Query: 738 RVTMAGNVYSFGVILLELLTGK 759
           +     +V+S GVIL  LL G 
Sbjct: 213 KYDEKCDVWSIGVILFILLAGY 234

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 53.8 bits (130), Expect = 9e-08
 Identities = 36/171 (21%), Positives = 69/171 (40%), Gaps = 27/171 (15%)

Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           ++ +   E  V+  + N +V   L   L + +  L  +  P G L D +    ++ +   
Sbjct: 60  ANKEILDEAYVMASVDNPHVCRLLGICL-TSTVQLITQLMPFGCLLDYVREH-KDNIGSQ 117

Query: 658 SRYSIAVGVAQGLAFL------HGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
              +  V +A+G+ +L      H          DL+ RN+ +K+ +  +I D  L K++ 
Sbjct: 118 YLLNWCVQIAKGMNYLEDRRLVH---------RDLAARNVLVKTPQHVKITDFGLAKLLG 168

Query: 712 PSKSTGSLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
             +            G +P      E       T   +V+S+GV + EL+T
Sbjct: 169 AEEKE-----YHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 214

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 15/164 (9%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLAS--DSAYLFYEYAPKGTLFDVLHGCLENALDWAS 658
              KE+E+L  L + N++           +   L  E+ P G+L + L    +N ++   
Sbjct: 69  DLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKN-KNKINLKQ 127

Query: 659 RYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS 718
           +   AV + +G+ +L    S   +  DL+ RN+ ++S  + +IGD  L K I+  K    
Sbjct: 128 QLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEY-- 182

Query: 719 LSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
                      P     PE     +  +A +V+SFGV L ELLT
Sbjct: 183 --YTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLT 224

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 31/153 (20%)

Query: 296 MNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSI 355
           ++  +  +  ++ +  S LK    + +S N++   I S LS + NL  L+L +N +   I
Sbjct: 30  LHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KI 85

Query: 356 PNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLD 415
            N      +L EL +  NQ++              +LS             +L  L VL 
Sbjct: 86  ENLDAVADTLEELWISYNQIA--------------SLSG----------IEKLVNLRVLY 121

Query: 416 LSNNRFSGEIPQL--LAQMPTLTQLLLTNNQLS 446
           +SNN+ +    ++  LA +  L  LLL  N L 
Sbjct: 122 MSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 36/178 (20%), Positives = 58/178 (32%), Gaps = 37/178 (20%)

Query: 35  LDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEI 94
           L      +   ++     L + K L LS N        +L   + L  L L  N    +I
Sbjct: 30  LHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KI 85

Query: 95  PKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSR 154
               A    L  + +S N +  +    I +L  L VL +S N +     T+   I  L+ 
Sbjct: 86  ENLDAVADTLEELWISYNQI--ASLSGIEKLVNLRVLYMSNNKI-----TNWGEIDKLAA 138

Query: 155 FAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSH----------PNLQTID 202
                              L +L L+ N L      +  +           PNL+ +D
Sbjct: 139 L----------------DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 30/152 (19%)

Query: 60  NLSKNKFNGFLPINLGKTKALEELVLSGNAFHG--EIPKGIADYRNLTLIDLSANNLSGS 117
              K+    F           E++ L         ++   ++  +    + LS NN+   
Sbjct: 5   TTIKDAIRIFEERKSVVATEAEKVELH-GMIPPIEKMDATLSTLKACKHLALSTNNIE-- 61

Query: 118 VPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNL 177
               +  +  L +L L  N            I  +    A  +             L  L
Sbjct: 62  KISSLSGMENLRILSLGRNL-----------IKKIENLDAVADT------------LEEL 98

Query: 178 DLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLE 209
            +SYN++  +  I+ L   NL+ + +S N + 
Sbjct: 99  WISYNQIASLSGIEKL--VNLRVLYMSNNKIT 128

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 69/384 (17%), Positives = 119/384 (30%), Gaps = 58/384 (15%)

Query: 32  LEVLDFSSNNLNGNINLQFDELV----SLKSLNLSKNKFNGFLPINL----GKTKALEEL 83
           ++ L    ++ +        EL     SL+ LN    +F    P +L       ++L  +
Sbjct: 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225

Query: 84  VLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLP 143
            +       E+        NL      + N    +P++   L     L        G   
Sbjct: 226 KVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL-----GLSY 279

Query: 144 TSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSH-PNLQTID 202
                +  L  FAA                +R LDL Y  L       L+   PNL+ ++
Sbjct: 280 MGPNEMPILFPFAAQ---------------IRKLDLLYALLETEDHCTLIQKCPNLEVLE 324

Query: 203 LSVNMLEGSLPQ--NMSPNLVRLRL-------GTNLLIGEIPSATFTSLE----KLTYLE 249
               + +  L         L RLR+       G     G +      +L     +L Y+ 
Sbjct: 325 TRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMA 384

Query: 250 LDNNSFT----GMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQ----VMNLQLN 301
           +  +  T      I   L +     L+ L + E    LP+  G   +L     +      
Sbjct: 385 VYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444

Query: 302 KLSGEIPSQ-----FSQLKLLSTMNISWNSLS-GSIPSFLSNLTNLVNLNLRQNNL-NGS 354
              G +              +  M + +   S   +  F     NL  L +R       +
Sbjct: 445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA 504

Query: 355 IPNSITNMRSLIELQLGGNQLSGT 378
           I  ++T + SL  L + G + S T
Sbjct: 505 IAAAVTKLPSLRYLWVQGYRASMT 528

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 53.8 bits (129), Expect = 2e-07
 Identities = 36/171 (21%), Positives = 68/171 (39%), Gaps = 26/171 (15%)

Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
              +  +E +++ +L N  ++  +  V  +++  L  E A  G L   L G     +  +
Sbjct: 379 DTEEMMREAQIMHQLDNPYIVRLIG-VCQAEALMLVMEMAGGGPLHKFLVGK-REEIPVS 436

Query: 658 SRYSIAVGVAQGLAFL------HGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
           +   +   V+ G+ +L      H          +L+ RN+ L +    +I D  L K + 
Sbjct: 437 NVAELLHQVSMGMKYLEEKNFVH---------RNLAARNVLLVNRHYAKISDFGLSKALG 487

Query: 712 PSKSTGSLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
              S       A S G  P     PE     + +   +V+S+GV + E L+
Sbjct: 488 ADDSY----YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALS 534

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 46/190 (24%), Positives = 74/190 (38%), Gaps = 37/190 (19%)

Query: 584 IKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLF 643
           +K L   D + Q  +   F +E+  +  L + N++     VL +    +  E AP G+L 
Sbjct: 51  VKCLK-PDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVL-TPPMKMVTELAPLGSLL 108

Query: 644 DVLHG-----CLENALDWASRYSIAVGVAQGLAFL------HGFTSNPILLLDLSTRNIF 692
           D L        L     +A      V VA+G+ +L      H          DL+ RN+ 
Sbjct: 109 DRLRKHQGHFLLGTLSRYA------VQVAEGMGYLESKRFIH---------RDLAARNLL 153

Query: 693 LKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYS 747
           L +    +IGD  L + +  +        V      +P     PE   T   + A + + 
Sbjct: 154 LATRDLVKIGDFGLMRALPQNDDH----YVMQEHRKVPFAWCAPESLKTRTFSHASDTWM 209

Query: 748 FGVILLELLT 757
           FGV L E+ T
Sbjct: 210 FGVTLWEMFT 219

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.4 bits (125), Expect = 3e-07
 Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 24/126 (19%)

Query: 84  VLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDR-IGELSKLEVLILSANNLDGRL 142
           +        +    +    NLT + +        +  R +  L +L  L +  +      
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG----- 67

Query: 143 PTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTID 202
                 +  ++  A     F        T  L  L+LS+N L   +    +   +LQ + 
Sbjct: 68  ------LRFVAPDA-----FHF------TPRLSRLNLSFNALE-SLSWKTVQGLSLQELV 109

Query: 203 LSVNML 208
           LS N L
Sbjct: 110 LSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 1/86 (1%)

Query: 218 PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQN 277
            NL  L +     +  +       L +L  L +  +    + P        L+ LNL+ N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 278 ELNGSLPIQLGSLGILQVMNLQLNKL 303
            L  SL  +      LQ + L  N L
Sbjct: 91  ALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 7/103 (6%)

Query: 182 NKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLP----QNMSPNLVRLRLGTNLLIGEIPSA 237
                     L    NL  + +        L     + +   L  L +  +  +  +   
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGL-GELRNLTIVKS-GLRFVAPD 74

Query: 238 TFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELN 280
            F    +L+ L L  N+    +  +     SL  L L+ N L+
Sbjct: 75  AFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 4e-06
 Identities = 16/109 (14%), Positives = 30/109 (27%), Gaps = 21/109 (19%)

Query: 349 NNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARL 408
            +      + +    +L EL +   Q    +                            L
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLE---------------------LRDLRGL 55

Query: 409 NGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVS 457
             L  L +  +      P      P L++L L+ N L  +  K  + +S
Sbjct: 56  GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS 104

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 7e-06
 Identities = 24/100 (24%), Positives = 35/100 (35%), Gaps = 2/100 (2%)

Query: 16  SKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQ-FDELVSLKSLNLSKNKFNGFLPINL 74
               L SL    G   L  L   +     ++ L+    L  L++L + K+      P   
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 75  GKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNL 114
             T  L  L LS NA    +        +L  + LS N L
Sbjct: 77  HFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 8e-06
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 6/100 (6%)

Query: 300 LNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSF-LSNLTNLVNLNLRQNNLNGSIPNS 358
               + +        + L+ + I        +    L  L  L NL + ++ L    P++
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 359 ITNMRSLIELQLGGNQLSGTIP---MMPPRLQIALNLSSN 395
                 L  L L  N L  ++    +    LQ  L LS N
Sbjct: 76  FHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQE-LVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 22/113 (19%), Positives = 35/113 (30%), Gaps = 5/113 (4%)

Query: 265 SCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQ-FSQLKLLSTMNIS 323
                + L   ++         L     L  + ++  +    +  +    L  L  + I 
Sbjct: 6   CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 324 WNSLSGSIPSF-LSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQL 375
            + L   +          L  LNL  N L  S+        SL EL L GN L
Sbjct: 65  KSGLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 2/93 (2%)

Query: 71  PINLGKTKALEELVLSGNAFHGEIPKG-IADYRNLTLIDLSANNLSGSVPDRIGELSKLE 129
             +L   + L EL +        +    +     L  + +  + L    PD      +L 
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 130 VLILSANNLDGRLPTSLASITTLSRFAANQNKF 162
            L LS N L+  L        +L     + N  
Sbjct: 84  RLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 25/86 (29%), Positives = 30/86 (34%), Gaps = 6/86 (6%)

Query: 10  LKLLNFSKN-ELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQ-FDELVSLKSLNLSKNK 65
           L  L       L  L      G   L  L    + L   +    F     L  LNLS N 
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNA 91

Query: 66  FNGFLPINLGKTKALEELVLSGNAFH 91
               L     +  +L+ELVLSGN  H
Sbjct: 92  LE-SLSWKTVQGLSLQELVLSGNPLH 116

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 43/204 (21%), Positives = 76/204 (37%), Gaps = 30/204 (14%)

Query: 568 FSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           F   +      SG+   IK +N   K        + + E+EVL  L + N++        
Sbjct: 35  FGDVHLVEERSSGLERVIKTIN---KDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFED 91

Query: 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYS------IAVGVAQGLAFLHGFTSNP 680
             + Y+  E    G L + +     +A       S      +   +   LA+ H   S  
Sbjct: 92  YHNMYIVMETCEGGELLERI----VSAQARGKALSEGYVAELMKQMMNALAYFH---SQH 144

Query: 681 ILLLDLSTRNIFLKSLKE---PQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE---YA 734
           ++  DL   NI  +        +I D  L ++    +     +  AG+  Y+ PE     
Sbjct: 145 VVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEH---STNAAGTALYMAPEVFKRD 201

Query: 735 YTMRVTMAGNVYSFGVILLELLTG 758
            T +     +++S GV++  LLTG
Sbjct: 202 VTFKC----DIWSAGVVMYFLLTG 221

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 45/209 (21%), Positives = 77/209 (36%), Gaps = 34/209 (16%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLN----WSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLA 622
                 A    +     IK ++          +       + E+E+L KL++  ++  + 
Sbjct: 23  CGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIK-IK 81

Query: 623 YVLASDSAYLFYEYAPKGTLFD--VLHGCL-ENALDWASRYSIAVGVAQGLAFLHGFTSN 679
               ++  Y+  E    G LFD  V +  L E        Y   +     + +LH    N
Sbjct: 82  NFFDAEDYYIVLELMEGGELFDKVVGNKRLKEAT---CKLYFYQM--LLAVQYLH---EN 133

Query: 680 PILLLDLSTRNIFLKSLKEPQ---IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE---- 732
            I+  DL   N+ L S +E     I D    K++  +     + T+ G+  Y+ PE    
Sbjct: 134 GIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSL---MRTLCGTPTYLAPEVLVS 190

Query: 733 ---YAYTMRVTMAGNVYSFGVILLELLTG 758
                Y   V    + +S GVIL   L+G
Sbjct: 191 VGTAGYNRAV----DCWSLGVILFICLSG 215

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 51.5 bits (124), Expect = 5e-07
 Identities = 37/164 (22%), Positives = 65/164 (39%), Gaps = 17/164 (10%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY 660
            F  E  ++G+  + N++     V     A +  EY   G+L   L    +         
Sbjct: 96  DFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTH-DGQFTIMQLV 154

Query: 661 SIAVGVAQGLAFL--HGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS 718
            +  GV  G+ +L   G+        DL+ RN+ + S    ++ D  L +V++       
Sbjct: 155 GMLRGVGAGMRYLSDLGYVHR-----DLAARNVLVDSNLVCKVSDFGLSRVLEDDPDA-- 207

Query: 719 LSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
                 + G IP     PE       + A +V+SFGV++ E+L 
Sbjct: 208 --AYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLA 249

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 52/206 (25%), Positives = 79/206 (38%), Gaps = 37/206 (17%)

Query: 568 FSTYYKAVM-PSGMSYFIK-----KLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPL 621
           F    K     +   Y +K          D            +E+E+L KL + N+M   
Sbjct: 35  FGEVLKCKDRITQQEYAVKVINKASAKNKDT-------STILREVELLKKLDHPNIMKLF 87

Query: 622 AYVLASDSAYLFYEYAPKGTLFD--VLHGCL-ENALDWASRYSIAVGVAQGLAFLHGFTS 678
             +  S S Y+  E    G LFD  +      E+    A+R  I   V  G+ ++H    
Sbjct: 88  EILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHD---AAR--IIKQVFSGITYMH---K 139

Query: 679 NPILLLDLSTRNIFLKSLKEPQ---IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE--- 732
           + I+  DL   NI L+S ++     I D  L      +     +    G+  YI PE   
Sbjct: 140 HNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTK---MKDRIGTAYYIAPEVLR 196

Query: 733 YAYTMRVTMAGNVYSFGVILLELLTG 758
             Y  +     +V+S GVIL  LL+G
Sbjct: 197 GTYDEKC----DVWSAGVILYILLSG 218

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 52.0 bits (125), Expect = 6e-07
 Identities = 43/210 (20%), Positives = 69/210 (32%), Gaps = 34/210 (16%)

Query: 568 FSTYYKAVM-PSGMSYFIKKLN---------WSDKIFQLGSHHKFDKELEVLGKLSNSNV 617
           +                IK +            D       H +   E+ +L  L + N+
Sbjct: 49  YGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNI 108

Query: 618 MTPLAYVLASDSAYLFYEYAPKGTLFD--VLHGCL-ENALDWASRYSIAVGVAQGLAFLH 674
           +            YL  E+   G LF+  +      E     A+   I   +  G+ +LH
Sbjct: 109 IKLFDVFEDKKYFYLVTEFYEGGELFEQIINRHKFDECD---AAN--IMKQILSGICYLH 163

Query: 675 GFTSNPILLLDLSTRNIFLKSLKE---PQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPP 731
               + I+  D+   NI L++       +I D  L            L    G+  YI P
Sbjct: 164 ---KHNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYK---LRDRLGTAYYIAP 217

Query: 732 E---YAYTMRVTMAGNVYSFGVILLELLTG 758
           E     Y  +     +V+S GVI+  LL G
Sbjct: 218 EVLKKKYNEKC----DVWSCGVIMYILLCG 243

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 35/122 (28%), Positives = 47/122 (38%), Gaps = 5/122 (4%)

Query: 159 QNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNM-- 216
            +K   SVP GI      L+L  NKL  +          L  + LS N ++ SLP  +  
Sbjct: 15  NSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFD 73

Query: 217 -SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLA 275
               L  L L  N L   +P+  F  L +L  L LD N    +         SL  + L 
Sbjct: 74  KLTKLTILYLHENKL-QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132

Query: 276 QN 277
            N
Sbjct: 133 TN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 39/144 (27%), Positives = 58/144 (40%), Gaps = 37/144 (25%)

Query: 234 IPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGIL 293
           IPS+        T LEL++N    +          LT L+L+QN++  SLP         
Sbjct: 26  IPSSA-------TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLP--------- 68

Query: 294 QVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPS--FLSNLTNLVNLNLRQNNL 351
                            F +L  L+ + +  N L  S+P+  F   LT L  L L  N L
Sbjct: 69  --------------DGVFDKLTKLTILYLHENKLQ-SLPNGVF-DKLTQLKELALDTNQL 112

Query: 352 NGSIPNSI-TNMRSLIELQLGGNQ 374
             S+P+ I   + SL ++ L  N 
Sbjct: 113 K-SVPDGIFDRLTSLQKIWLHTNP 135

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 50.7 bits (122), Expect = 7e-07
 Identities = 38/173 (21%), Positives = 66/173 (38%), Gaps = 31/173 (17%)

Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F +E EV+ KLS+  ++      L      L  E+   G L D L           
Sbjct: 46  SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQ-RGLFAAE 104

Query: 658 SRYSIAVGVAQGLAFL------HGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
           +   + + V +G+A+L      H          DL+ RN          +G+ ++ KV D
Sbjct: 105 TLLGMCLDVCEGMAYLEEACVIH---------RDLAARNCL--------VGENQVIKVSD 147

Query: 712 --PSKSTGSLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
              ++        + +    P     PE     R +   +V+SFGV++ E+ +
Sbjct: 148 FGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFS 200

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 51.2 bits (123), Expect = 7e-07
 Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 17/164 (10%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY 660
            F  E  ++G+  + N++     V  S    +  EY   G+L   L    +         
Sbjct: 92  DFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKH-DAQFTVIQLV 150

Query: 661 SIAVGVAQGLAFL--HGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS 718
            +  G+A G+ +L   G+        DL+ RNI + S    ++ D  L +V++       
Sbjct: 151 GMLRGIASGMKYLSDMGYVHR-----DLAARNILINSNLVCKVSDFGLGRVLEDDPEA-- 203

Query: 719 LSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
                   G IP     PE     + T A +V+S+G++L E+++
Sbjct: 204 --AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 50.8 bits (122), Expect = 8e-07
 Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 27/171 (15%)

Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S       +  +G L +++++  L       S  L  +Y P G+L D +      AL   
Sbjct: 58  SFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQLVTQYLPLGSLLDHVRQH-RGALGPQ 115

Query: 658 SRYSIAVGVAQGLAFL------HGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
              +  V +A+G+ +L      H          +L+ RN+ LKS  + Q+ D  +  ++ 
Sbjct: 116 LLLNWGVQIAKGMYYLEEHGMVH---------RNLAARNVLLKSPSQVQVADFGVADLLP 166

Query: 712 PSKSTGSLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
           P         +  S    P      E  +  + T   +V+S+GV + EL+T
Sbjct: 167 PDDKQ-----LLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMT 212

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 50.8 bits (122), Expect = 9e-07
 Identities = 51/208 (24%), Positives = 74/208 (35%), Gaps = 44/208 (21%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
            S  Y+     +   Y +K L  +              E+ VL +LS+ N++        
Sbjct: 66  TSIVYRCKQKGTQKPYALKVLKKTVDK------KIVRTEIGVLLRLSHPNIIKLKEIFET 119

Query: 627 SDSAYLFYEYAPKGTLFD--VLHGCLENALDWASRYS------IAVGVAQGLAFLHGFTS 678
                L  E    G LFD  V  G           YS          + + +A+LH    
Sbjct: 120 PTEISLVLELVTGGELFDRIVEKG----------YYSERDAADAVKQILEAVAYLH---E 166

Query: 679 NPILLLDLSTRNIFLKSLKEPQ----IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE-- 732
           N I+  DL   N+   +   P     I D  L K+++       + TV G+ GY  PE  
Sbjct: 167 NGIVHRDLKPENLLYAT-PAPDAPLKIADFGLSKIVEHQVL---MKTVCGTPGYCAPEIL 222

Query: 733 --YAYTMRVTMAGNVYSFGVILLELLTG 758
              AY   V M    +S G+I   LL G
Sbjct: 223 RGCAYGPEVDM----WSVGIITYILLCG 246

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 13/102 (12%)

Query: 159 QNKFSGSVPGGITRFLRNLDLSYNKL----LGVIPIDLLSHPNLQTIDLSVNMLEGSLPQ 214
           QN    SVP GI    + L L+ N++     GV   D L   NLQ +  + N L  ++P 
Sbjct: 20  QNIRLASVPAGIPTDKQRLWLNNNQITKLEPGV--FDHLV--NLQQLYFNSNKLT-AIPT 74

Query: 215 NM---SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNN 253
            +      L +L L  N L   IP   F +L+ LT++ L NN
Sbjct: 75  GVFDKLTQLTQLDLNDNHL-KSIPRGAFDNLKSLTHIYLYNN 115

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 36/168 (21%), Positives = 67/168 (39%), Gaps = 27/168 (16%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY 660
           +   E  V+  + N +V   L   L + +  L  +  P G L D +    ++ +      
Sbjct: 63  EILDEAYVMASVDNPHVCRLLGICL-TSTVQLITQLMPFGCLLDYVREH-KDNIGSQYLL 120

Query: 661 SIAVGVAQGLAFL------HGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK 714
           +  V +A+G+ +L      H          DL+ RN+ +K+ +  +I D  L K++   +
Sbjct: 121 NWCVQIAKGMNYLEDRRLVH---------RDLAARNVLVKTPQHVKITDFGLAKLLGAEE 171

Query: 715 STGSLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
                       G +P      E       T   +V+S+GV + EL+T
Sbjct: 172 KE-----YHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 214

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 49.9 bits (120), Expect = 1e-06
 Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 29/201 (14%)

Query: 568 FSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           +     AV   + +    KK+        +    +F +E+E++  L + N++        
Sbjct: 22  WGEVKIAVQKGTRIRRAAKKIPKY----FVEDVDRFKQEIEIMKSLDHPNIIRLYETFED 77

Query: 627 SDSAYLFYEYAPKGTLFD--VLHGCL-ENALDWASRYSIAVGVAQGLAFLHGFTSNPILL 683
           +   YL  E    G LF+  V      E+    A+R  I   V   +A+ H      +  
Sbjct: 78  NTDIYLVMELCTGGELFERVVHKRVFRESD---AAR--IMKDVLSAVAYCH---KLNVAH 129

Query: 684 LDLSTRNIFLKSLKE---PQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE---YAYTM 737
            DL   N    +       ++ D  L     P K    + T  G+  Y+ P+     Y  
Sbjct: 130 RDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKM---MRTKVGTPYYVSPQVLEGLYGP 186

Query: 738 RVTMAGNVYSFGVILLELLTG 758
                 + +S GV++  LL G
Sbjct: 187 EC----DEWSAGVMMYVLLCG 203

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 26/171 (15%)

Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
              +  +E +++ +L N  ++  +  V  +++  L  E A  G L   L G     +  +
Sbjct: 53  DTEEMMREAQIMHQLDNPYIVRLIG-VCQAEALMLVMEMAGGGPLHKFLVGK-REEIPVS 110

Query: 658 SRYSIAVGVAQGLAFL------HGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
           +   +   V+ G+ +L      H          DL+ RN+ L +    +I D  L K + 
Sbjct: 111 NVAELLHQVSMGMKYLEEKNFVH---------RDLAARNVLLVNRHYAKISDFGLSKALG 161

Query: 712 PSKSTGSLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
              S       A S G  P     PE     + +   +V+S+GV + E L+
Sbjct: 162 ADDSY----YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALS 208

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 9/161 (5%)

Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDW 656
           +   F  E  V+ +L +SN++  L  ++      Y+  EY  KG+L D L     + L  
Sbjct: 229 TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGG 288

Query: 657 ASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST 716
                 ++ V + + +L     N  +  DL+ RN+ +      ++ D  L K    ++ T
Sbjct: 289 DCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDT 345

Query: 717 GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
           G L      V +  PE     + +   +V+SFG++L E+ +
Sbjct: 346 GKL-----PVKWTAPEALREKKFSTKSDVWSFGILLWEIYS 381

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 49.9 bits (120), Expect = 1e-06
 Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 15/165 (9%)

Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S   F  E  ++ +L +  ++   A V+  +  Y+  EY   G+L D L       L   
Sbjct: 51  SPDAFLAEANLMKQLQHQRLVRLYA-VVTQEPIYIITEYMENGSLVDFLKTPSGIKLTIN 109

Query: 658 SRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG 717
               +A  +A+G+AF+        +  DL   NI +      +I D  L ++I+ ++ T 
Sbjct: 110 KLLDMAAQIAEGMAFI---EERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTA 166

Query: 718 SLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
                       P     PE       T+  +V+SFG++L E++T
Sbjct: 167 R------EGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 205

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 13/102 (12%)

Query: 159 QNKFSGSVPGGITRFLRNLDLSYNKL----LGVIPIDLLSHPNLQTIDLSVNMLEGSLPQ 214
             K   SVP GI    + L L  N++     GV   D L+   L  +DL  N L   LP 
Sbjct: 17  SGKSLASVPTGIPTTTQVLYLYDNQITKLEPGV--FDRLT--QLTRLDLDNNQLT-VLPA 71

Query: 215 NM---SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNN 253
            +      L +L L  N L   IP   F +L+ LT++ L NN
Sbjct: 72  GVFDKLTQLTQLSLNDNQL-KSIPRGAFDNLKSLTHIWLLNN 112

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 38/164 (23%), Positives = 67/164 (40%), Gaps = 17/164 (10%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY 660
            F  E  ++G+ S+ N++     +       +  EY   G L   L    +         
Sbjct: 92  DFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREK-DGEFSVLQLV 150

Query: 661 SIAVGVAQGLAFL--HGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS 718
            +  G+A G+ +L    +        DL+ RNI + S    ++ D  L +V++       
Sbjct: 151 GMLRGIAAGMKYLANMNYVHR-----DLAARNILVNSNLVCKVSDFGLSRVLEDDPEA-- 203

Query: 719 LSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
             T   S G IP     PE     + T A +V+SFG+++ E++T
Sbjct: 204 --TYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMT 245

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 58/359 (16%), Positives = 108/359 (30%), Gaps = 64/359 (17%)

Query: 122 IGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSY 181
           I  L  LE        L       L     L     +    +      +   LR L+L+ 
Sbjct: 22  IKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAG 81

Query: 182 NKL--LGVIPI-DLLSHPN--LQTIDLSVNML--EGS---LPQNMSPNLVRLRLGTNLL- 230
            ++  +    +  +L      L  ++L+   L   G    LP  +     +L L  N L 
Sbjct: 82  VRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL--RARKLGLQLNSLG 139

Query: 231 ---IGEIPSATFTSLEKLTYLELDNNSFTG----MIPQQLGSCRSLTLLNLAQNELNGSL 283
                ++         ++T L L NN  T     ++ + L    S+T L+L         
Sbjct: 140 PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT------ 193

Query: 284 PIQLGSLGILQVMN-LQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGS----IPSFLSNL 338
              LG  G+  +   L  N             + L  +N+++N    +    +       
Sbjct: 194 --GLGDEGLELLAAQLDRN-------------RQLQELNVAYNGAGDTAALALARAAREH 238

Query: 339 TNLVNLNLRQNNLN-------GSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALN 391
            +L  L+L  N L+         +  +      ++     G  +S         L     
Sbjct: 239 PSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS---EYWSVILSEVQR 295

Query: 392 LSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQM----PTLTQLLLTNNQLS 446
             ++     +         L + DL ++R +   P   AQ+      +  LL       
Sbjct: 296 NLNSWDRARVQRHLE----LLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 47/341 (13%), Positives = 99/341 (29%), Gaps = 73/341 (21%)

Query: 40  NNLNGNINLQFDELV-----SLKSLNLSKNKFNGFLPINLGK-----TKALEELVLSGNA 89
           ++L  +   Q          SL+ LNL+  +        +         AL+E+ L+   
Sbjct: 53  DHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ 112

Query: 90  FHGEIPKGIADY-RNLTLIDLSANNLSGSVPDRIGEL-----SKLEVLILSANNLDGRLP 143
                 + +         + L  N+L       + +L      ++  L LS N L     
Sbjct: 113 LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTA--- 169

Query: 144 TSLASITTLSR-FAANQNKFSGSVPGGITRFLRNLDLSYNKL--LGVIPI--DLLSHPNL 198
              A +  L    A N +             + +L L +  L   G+  +   L  +  L
Sbjct: 170 ---AGVAVLMEGLAGNTS-------------VTHLSLLHTGLGDEGLELLAAQLDRNRQL 213

Query: 199 QTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFT-- 256
           Q ++++ N    +                  L     +        L  L L  N  +  
Sbjct: 214 QELNVAYNGAGDT--------------AALAL-----ARAAREHPSLELLHLYFNELSSE 254

Query: 257 --GMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQL 314
              ++    G+      + ++  E        +     + +  +Q N  S +       L
Sbjct: 255 GRQVLRDLGGAAEGGARVVVSLTEGT-----AVSEYWSVILSEVQRNLNSWDRARVQRHL 309

Query: 315 KLLSTMNISWNSLS----GSIPSFLSNLTNLVNLNLRQNNL 351
           +LL   ++  +  +          L     +  L  +  + 
Sbjct: 310 ELLL-RDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 38/207 (18%)

Query: 568 FSTYYKAV-MPSGMSYFIK-----KLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPL 621
           FS   + V   +G+ +  K     KL+  D         K ++E  +  KL + N++   
Sbjct: 19  FSVVRRCVHKTTGLEFAAKIINTKKLSARD-------FQKLEREARICRKLQHPNIVRLH 71

Query: 622 AYVLASDSAYLFYEYAPKGTLFD--VLHGCL-ENALDWASRYSIAVGVAQGLAFLHGFTS 678
             +      YL ++    G LF+  V      E     AS       + + +A+ H   S
Sbjct: 72  DSIQEESFHYLVFDLVTGGELFEDIVAREFYSEAD---ASH--CIQQILESIAYCH---S 123

Query: 679 NPILLLDLSTRNIFLKSLKEPQ---IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE--- 732
           N I+  +L   N+ L S  +     + D  L   ++ S++       AG+ GY+ PE   
Sbjct: 124 NGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEA---WHGFAGTPGYLSPEVLK 180

Query: 733 -YAYTMRVTMAGNVYSFGVILLELLTG 758
              Y+  V    ++++ GVIL  LL G
Sbjct: 181 KDPYSKPV----DIWACGVILYILLVG 203

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 48.7 bits (117), Expect = 3e-06
 Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 33/173 (19%)

Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDW 656
           +   F  E  V+ +L +SN++  L  ++      Y+  EY  KG+L D L     + L  
Sbjct: 57  TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGG 116

Query: 657 ASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID----- 711
                 ++ V + + +L     N  +  DL+ RN+         + +  + KV D     
Sbjct: 117 DCLLKFSLDVCEAMEYL---EGNNFVHRDLAARNVL--------VSEDNVAKVSDFGLTK 165

Query: 712 --PSKSTGSLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
              S             G +P     PE     + +   +V+SFG++L E+ +
Sbjct: 166 EASSTQDT---------GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYS 209

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 27/168 (16%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY 660
           +   E  V+ +L N  ++  +  +  ++S  L  E A  G L   L       +   +  
Sbjct: 64  ELLAEANVMQQLDNPYIVRMIG-ICEAESWMLVMEMAELGPLNKYLQQN--RHVKDKNII 120

Query: 661 SIAVGVAQGLAFL------HGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK 714
            +   V+ G+ +L      H          DL+ RN+ L +    +I D  L K +   +
Sbjct: 121 ELVHQVSMGMKYLEESNFVH---------RDLAARNVLLVTQHYAKISDFGLSKALRADE 171

Query: 715 STGSLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
           +       A + G  P     PE     + +   +V+SFGV++ E  +
Sbjct: 172 NY----YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFS 215

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 35/204 (17%), Positives = 70/204 (34%), Gaps = 33/204 (16%)

Query: 567 RFSTYYKAV-MPSGMSY---FIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLA 622
            F   ++ V   S  +Y   F+K         +        KE+ +L    + N++    
Sbjct: 17  EFGIVHRCVETSSKKTYMAKFVKV--------KGTDQVLVKKEISILNIARHRNILHLHE 68

Query: 623 YVLASDSAYLFYEYAPKGTLFD--VLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNP 680
              + +   + +E+     +F+         N  +    Y   V   + L FLH   S+ 
Sbjct: 69  SFESMEELVMIFEFISGLDIFERINTSAFELNERE-IVSYVHQV--CEALQFLH---SHN 122

Query: 681 ILLLDLSTRNIFLKSLKEPQ--IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE----YA 734
           I   D+   NI  ++ +     I +    + + P  +      +  +  Y  PE      
Sbjct: 123 IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDN---FRLLFTAPEYYAPEVHQHDV 179

Query: 735 YTMRVTMAGNVYSFGVILLELLTG 758
            +    M    +S G ++  LL+G
Sbjct: 180 VSTATDM----WSLGTLVYVLLSG 199

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 37/160 (23%), Positives = 64/160 (40%), Gaps = 7/160 (4%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASR 659
            F +E  ++  L++ NV+  +  +L  +   ++   Y   G L   +    +        
Sbjct: 68  AFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSP-QRNPTVKDL 126

Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
            S  + VA+G+ +L        +  DL+ RN  L      ++ D  L + I   +     
Sbjct: 127 ISFGLQVARGMEYL---AEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQ 183

Query: 720 STVAGS--VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
                   V +   E   T R T   +V+SFGV+L ELLT
Sbjct: 184 QHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLT 223

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 53/204 (25%), Positives = 82/204 (40%), Gaps = 33/204 (16%)

Query: 568 FSTYYKAVM-PSGMSY---FIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAY 623
           F    K     +   Y    I K +  +K           +E+E+L KL + N+M     
Sbjct: 35  FGEVLKCKDRITQQEYAVKVINKASAKNK-----DTSTILREVELLKKLDHPNIMKLFEI 89

Query: 624 VLASDSAYLFYEYAPKGTLFD--VLHGCL-ENALDWASRYSIAVGVAQGLAFLHGFTSNP 680
           +  S S Y+  E    G LFD  +      E+    A+R  I   V  G+ ++H    + 
Sbjct: 90  LEDSSSFYIVGELYTGGELFDEIIKRKRFSEHD---AAR--IIKQVFSGITYMH---KHN 141

Query: 681 ILLLDLSTRNIFLKSLKE---PQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE---YA 734
           I+  DL   NI L+S ++    +I D  L      +     +    G+  YI PE     
Sbjct: 142 IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTK---MKDRIGTAYYIAPEVLRGT 198

Query: 735 YTMRVTMAGNVYSFGVILLELLTG 758
           Y  +     +V+S GVIL  LL+G
Sbjct: 199 YDEKC----DVWSAGVILYILLSG 218

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 34/173 (19%), Positives = 60/173 (34%), Gaps = 33/173 (19%)

Query: 603 DKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL--HGCLENALDWASRY 660
            +EL     LS+  ++     V       +F E    G+L  ++   GCL          
Sbjct: 98  VEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIKQMGCLPEDR------ 151

Query: 661 SIAVGVAQ---GLAFLHGFTSNPILLLDLSTRNIFL----KSLKEPQIGDIELCKVIDPS 713
                + Q   GL +LH   +  IL  D+   N+ L           + D      + P 
Sbjct: 152 -ALYYLGQALEGLEYLH---TRRILHGDVKADNVLLSSDGSRAA---LCDFGHALCLQPD 204

Query: 714 KSTGSLS---TVAGSVGYIPPE----YAYTMRVTMAGNVYSFGVILLELLTGK 759
               SL     + G+  ++ PE         +V    +++S   ++L +L G 
Sbjct: 205 GLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKV----DIWSSCCMMLHMLNGC 253

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 47/231 (20%), Positives = 86/231 (37%), Gaps = 43/231 (18%)

Query: 605 ELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENAL--DWASRYS 661
           E ++L K+ NS  +  LAY   +  A  L       G L   ++   +       A  Y 
Sbjct: 234 EKQILEKV-NSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFY- 291

Query: 662 IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST 721
            A  +  GL  LH      I+  DL   NI L      +I D+ L   +   ++      
Sbjct: 292 -AAEICCGLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTI---KG 344

Query: 722 VAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDK 781
             G+VGY+ PE     R T + + ++ G +L E++ G++   Q  +          ++++
Sbjct: 345 RVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKK--------KIKREE 396

Query: 782 LDH-ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN 831
           ++  + +     +                     SP+A    +S+   LL 
Sbjct: 397 VERLVKEVPEEYSE------------------RFSPQA----RSLCSQLLC 425

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 35/176 (19%), Positives = 61/176 (34%), Gaps = 33/176 (18%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL-----HGCLENALD 655
            F  E  ++ K ++ N++  +   L S   ++  E    G L   L          ++L 
Sbjct: 79  DFLMEALIISKFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLA 138

Query: 656 WASRYSIAVGVAQGLAFL------HGFTSNPILLLDLSTRNIFLKSLKEPQ---IGDIEL 706
                 +A  +A G  +L      H          D++ RN  L      +   IGD  +
Sbjct: 139 MLDLLHVARDIACGCQYLEENHFIHR---------DIAARNCLLTCPGPGRVAKIGDFGM 189

Query: 707 CKVIDPSKSTGSLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
            + I  +          G    +P     PE       T   + +SFGV+L E+ +
Sbjct: 190 ARDIYRAS-----YYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 240

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 48.0 bits (115), Expect = 6e-06
 Identities = 53/190 (27%), Positives = 75/190 (39%), Gaps = 46/190 (24%)

Query: 599 HHKFDKELEVLGKLSN-SNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           H  F  ELEVL KL +  N++  L         YL  EYAP G L D L        D A
Sbjct: 69  HRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPA 128

Query: 658 SRY--------------SIAVGVAQGLAFL------HGFTSNPILLLDLSTRNIFLKSLK 697
                              A  VA+G+ +L      H          DL+ RNI      
Sbjct: 129 FAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHR---------DLAARNIL----- 174

Query: 698 EPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIP-----PEYAYTMRV-TMAGNVYSFGVI 751
              +G+  + K+ D   S G    V  ++G +P      E +    V T   +V+S+GV+
Sbjct: 175 ---VGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIE-SLNYSVYTTNSDVWSYGVL 230

Query: 752 LLELLT-GKT 760
           L E+++ G T
Sbjct: 231 LWEIVSLGGT 240

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 13/163 (7%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASR 659
           +F  E  ++   S+ NV++ L   L S+ +  +   Y   G L + +     +       
Sbjct: 136 QFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNE-THNPTVKDL 194

Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
               + VA+G+ FL    S   +  DL+ RN  L      ++ D  L + +         
Sbjct: 195 IGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM---YDKEFD 248

Query: 720 STVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
           S    +   +P      E   T + T   +V+SFGV+L EL+T
Sbjct: 249 SVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 291

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 48.7 bits (116), Expect = 7e-06
 Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 28/168 (16%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY 660
           KF +E   + +  + +++  +  V+  +  ++  E    G L   L    + +LD AS  
Sbjct: 437 KFLQEALTMRQFDHPHIVKLIG-VITENPVWIIMELCTLGELRSFLQVR-KFSLDLASLI 494

Query: 661 SIAVGVAQGLAFL------HGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK 714
             A  ++  LA+L      H          D++ RN+ + S    ++GD  L + ++ S 
Sbjct: 495 LYAYQLSTALAYLESKRFVH---------RDIAARNVLVSSNDCVKLGDFGLSRYMEDS- 544

Query: 715 STGSLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
                +    S G +P     PE     R T A +V+ FGV + E+L 
Sbjct: 545 -----TYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILM 587

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 38/207 (18%)

Query: 568 FSTYYKAV-MPSGMSYFIK-----KLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPL 621
           FS   + V   +G+ +  K     KL+  D         K ++E  +  KL + N++   
Sbjct: 42  FSVVRRCVHKTTGLEFAAKIINTKKLSARD-------FQKLEREARICRKLQHPNIVRLH 94

Query: 622 AYVLASDSAYLFYEYAPKGTLFD--VLHGCL-ENALDWASRYSIAVGVAQGLAFLHGFTS 678
             +      YL ++    G LF+  V      E     AS       + + +A+ H   S
Sbjct: 95  DSIQEESFHYLVFDLVTGGELFEDIVAREFYSEAD---ASH--CIQQILESIAYCH---S 146

Query: 679 NPILLLDLSTRNIFLKSLKEPQ---IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE--- 732
           N I+  +L   N+ L S  +     + D  L   ++ S++       AG+ GY+ PE   
Sbjct: 147 NGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEA---WHGFAGTPGYLSPEVLK 203

Query: 733 -YAYTMRVTMAGNVYSFGVILLELLTG 758
              Y+  V    ++++ GVIL  LL G
Sbjct: 204 KDPYSKPV----DIWACGVILYILLVG 226

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 47.6 bits (114), Expect = 7e-06
 Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 7/160 (4%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENALDWASR 659
           +F  E  ++   S+ NV++ L   L S+ +  +   Y   G L + +     +       
Sbjct: 72  QFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRN-ETHNPTVKDL 130

Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
               + VA+G+ +L    S   +  DL+ RN  L      ++ D  L + +   +     
Sbjct: 131 IGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVH 187

Query: 720 STVAGS--VGYIPPEYAYTMRVTMAGNVYSFGVILLELLT 757
           +       V ++  E   T + T   +V+SFGV+L EL+T
Sbjct: 188 NKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 227

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 47.6 bits (114), Expect = 8e-06
 Identities = 30/169 (17%), Positives = 60/169 (35%), Gaps = 23/169 (13%)

Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S  +F +E +V+  LS+  ++            ++  EY   G L + L     +     
Sbjct: 62  SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREM-RHRFQTQ 120

Query: 658 SRYSIAVGVAQGLAFL--HGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID--PS 713
               +   V + + +L    F        DL+ RN          + D  + KV D   S
Sbjct: 121 QLLEMCKDVCEAMEYLESKQFLHR-----DLAARNCL--------VNDQGVVKVSDFGLS 167

Query: 714 KSTGSLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
           +        +      P     PE     + +   ++++FGV++ E+ +
Sbjct: 168 RYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYS 216

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 47.6 bits (114), Expect = 8e-06
 Identities = 34/173 (19%), Positives = 64/173 (36%), Gaps = 31/173 (17%)

Query: 598 SHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWA 657
           S  +F +E + + KLS+  ++            Y+  EY   G L + L       L+ +
Sbjct: 46  SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRS-HGKGLEPS 104

Query: 658 SRYSIAVGVAQGLAFL------HGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
               +   V +G+AFL      H          DL+ RN          +      KV D
Sbjct: 105 QLLEMCYDVCEGMAFLESHQFIH---------RDLAARNCL--------VDRDLCVKVSD 147

Query: 712 --PSKSTGSLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
              ++       V+      P     PE  +  + +   +V++FG+++ E+ +
Sbjct: 148 FGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFS 200

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 43/202 (21%), Positives = 76/202 (37%), Gaps = 27/202 (13%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           FS   + V + +G  Y    +N   K      H K ++E  +   L + N++     +  
Sbjct: 24  FSVVRRCVKVLAGQEYAAMIIN--TKKLSARDHQKLEREARICRLLKHPNIVRLHDSISE 81

Query: 627 SDSAYLFYEYAPKGTLFD--VLHGCL-ENALDWASRYSIAVGVAQGLAFLHGFTSNPILL 683
               YL ++    G LF+  V      E     AS       + + +   H      ++ 
Sbjct: 82  EGHHYLIFDLVTGGELFEDIVAREYYSEAD---ASH--CIQQILEAVLHCH---QMGVVH 133

Query: 684 LDLSTRNIFLKSLKEP---QIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE----YAYT 736
            +L   N+ L S  +    ++ D  L   ++  +        AG+ GY+ PE      Y 
Sbjct: 134 RNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQA--WFGFAGTPGYLSPEVLRKDPYG 191

Query: 737 MRVTMAGNVYSFGVILLELLTG 758
             V    ++++ GVIL  LL G
Sbjct: 192 KPV----DLWACGVILYILLVG 209

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 18/158 (11%), Positives = 34/158 (21%), Gaps = 36/158 (22%)

Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYS 661
                  L ++    V   L  V       +  E+   G+L +V       +        
Sbjct: 78  TLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVADT----SPSPVGAIR 133

Query: 662 IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST 721
               +A      H      + L       + +                       G +  
Sbjct: 134 AMQSLAAAADAAHR---AGVALSIDHPSRVRV--------------------SIDGDV-- 168

Query: 722 VAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
           V      +P             ++   G  L  LL  +
Sbjct: 169 VLAYPATMPD-------ANPQDDIRGIGASLYALLVNR 199

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 47/235 (20%), Positives = 81/235 (34%), Gaps = 48/235 (20%)

Query: 591 DKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFD--VLH 647
           D    +       KE+ +   L++ NV+          +  YLF EY   G LFD     
Sbjct: 41  DMKRAVDCPENIKKEICINKMLNHENVVK-FYGHRREGNIQYLFLEYCSGGELFDRIEPD 99

Query: 648 GCLENALDWASRY---SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL---KSLKEPQI 701
             +      A R+    +A     G+ +LH      I   D+   N+ L    +LK   I
Sbjct: 100 IGMPE--PDAQRFFHQLMA-----GVVYLH---GIGITHRDIKPENLLLDERDNLK---I 146

Query: 702 GDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVY--------SFGVILL 753
            D  L  V   +     L+ + G++ Y+ PE        +    +        S G++L 
Sbjct: 147 SDFGLATVFRYNNRERLLNKMCGTLPYVAPE-------LLKRREFHAEPVDVWSCGIVLT 199

Query: 754 ELLTGK----TAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTV 804
            +L G+       +   E + W  +      K        +    LA+  ++L  
Sbjct: 200 AMLAGELPWDQPSDSCQEYSDWKEK------KTYLNPWKKIDSAPLALLHKILVE 248

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 45/210 (21%), Positives = 75/210 (35%), Gaps = 39/210 (18%)

Query: 567 RFSTYYKAV-MPSGMSY---FIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPL 621
           +F+   + +   +G  Y   F+KK              +   E+ VL        V+   
Sbjct: 41  KFAVVRQCISKSTGQEYAAKFLKKRRRGQD-----CRAEILHEIAVLELAKSCPRVINLH 95

Query: 622 AYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYS--IAVG----VAQGLAFLHG 675
                +    L  EYA  G +F +         + A   S    +     + +G+ +LH 
Sbjct: 96  EVYENTSEIILILEYAAGGEIFSLC------LPELAEMVSENDVIRLIKQILEGVYYLH- 148

Query: 676 FTSNPILLLDLSTRNIFLKSLKEPQ---IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE 732
              N I+ LDL  +NI L S+       I D  + + I  +     L  + G+  Y+ PE
Sbjct: 149 --QNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACE---LREIMGTPEYLAPE 203

Query: 733 ----YAYTMRVTMAGNVYSFGVILLELLTG 758
                  T    M    ++ G+I   LLT 
Sbjct: 204 ILNYDPITTATDM----WNIGIIAYMLLTH 229

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 38/172 (22%), Positives = 66/172 (38%), Gaps = 21/172 (12%)

Query: 599 HHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGC--------L 650
             +F  E  V+ + +  +V+  L  V       +  E   +G L   L           +
Sbjct: 72  RIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPV 131

Query: 651 ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI 710
                 +    +A  +A G+A+L+   +N  +  DL+ RN  +      +IGD  + + I
Sbjct: 132 LAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDI 188

Query: 711 DPSKSTGSLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
             +          G  G +P     PE       T   +V+SFGV+L E+ T
Sbjct: 189 YETD-----YYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIAT 235

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 43/207 (20%), Positives = 72/207 (34%), Gaps = 27/207 (13%)

Query: 568 FSTYYKAV-MPSGMSYFIK-----KLNWSDKIFQLGSHHKFDKELEVLGKLSN-SNVMTP 620
            S   + +  P+   Y +K                       KE+++L K+S   N++  
Sbjct: 30  SSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQL 89

Query: 621 LAYVLASDSAYLFYEYAPKGTLFD--VLHGCL-ENALDWASRYSIAVGVAQGLAFLHGFT 677
                 +   +L ++   KG LFD       L E       +  I   + + +  LH   
Sbjct: 90  KDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKE---TRK--IMRALLEVICALH--- 141

Query: 678 SNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE----- 732
              I+  DL   NI L      ++ D      +DP +    L  V G+  Y+ PE     
Sbjct: 142 KLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEK---LREVCGTPSYLAPEIIECS 198

Query: 733 -YAYTMRVTMAGNVYSFGVILLELLTG 758
                       +++S GVI+  LL G
Sbjct: 199 MNDNHPGYGKEVDMWSTGVIMYTLLAG 225

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 34/181 (18%), Positives = 61/181 (33%), Gaps = 43/181 (23%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL-----HGCLENALD 655
            F  E  ++ K ++ N++  +   L S   ++  E    G L   L          ++L 
Sbjct: 120 DFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLA 179

Query: 656 WASRYSIAVGVAQGLAFL------HGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV 709
                 +A  +A G  +L      H          D++ RN  L      ++      K+
Sbjct: 180 MLDLLHVARDIACGCQYLEENHFIHR---------DIAARNCLLTCPGPGRV-----AKI 225

Query: 710 ID-------PSKSTGSLSTVAGSVGYIP-----PEYAYTMRV-TMAGNVYSFGVILLELL 756
            D                   G    +P     PE A+   + T   + +SFGV+L E+ 
Sbjct: 226 GDFGMARDIYRAGY----YRKGGCAMLPVKWMPPE-AFMEGIFTSKTDTWSFGVLLWEIF 280

Query: 757 T 757
           +
Sbjct: 281 S 281

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 42/137 (30%), Positives = 55/137 (40%), Gaps = 17/137 (12%)

Query: 628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLS 687
           D  Y   EY   G L   +          A  Y  A  +A GL FL    S  I+  DL 
Sbjct: 415 DRLYFVMEYVNGGDLMYHIQQVGRFKEPHAVFY--AAEIAIGLFFLQ---SKGIIYRDLK 469

Query: 688 TRNIFLKSLKEPQIGDIELCK-VIDPSKSTGSLSTVAGSVGYIPPE----YAYTMRVTMA 742
             N+ L S    +I D  +CK  I    +T    T  G+  YI PE      Y   V   
Sbjct: 470 LDNVMLDSEGHIKIADFGMCKENIWDGVTT---KTFCGTPDYIAPEIIAYQPYGKSVDW- 525

Query: 743 GNVYSFGVILLELLTGK 759
              ++FGV+L E+L G+
Sbjct: 526 ---WAFGVLLYEMLAGQ 539

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 39/249 (15%), Positives = 72/249 (28%), Gaps = 71/249 (28%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSD-KIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVL 625
           +     A+   +     IK +N +  +        +   E+ ++ KL + N+   L  V 
Sbjct: 39  YGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIAR-LYEVY 97

Query: 626 ASDSA-YLFYEYAPKGTLFD--------------------------------VLHGCLEN 652
             +    L  E    G L D                                +       
Sbjct: 98  EDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGF 157

Query: 653 ALDWASRYS------IAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIEL 706
                          I   +   L +LH   +  I   D+   N    + K  +I     
Sbjct: 158 RESLDFVQREKLISNIMRQIFSALHYLH---NQGICHRDIKPENFLFSTNKSFEI----- 209

Query: 707 CKVID----------PSKSTGSLSTVAGSVGYIPPE------YAYTMRVTMAGNVYSFGV 750
            K++D           +     ++T AG+  ++ PE       +Y  +     + +S GV
Sbjct: 210 -KLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKC----DAWSAGV 264

Query: 751 ILLELLTGK 759
           +L  LL G 
Sbjct: 265 LLHLLLMGA 273

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 47/235 (20%), Positives = 81/235 (34%), Gaps = 48/235 (20%)

Query: 591 DKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFD--VLH 647
           D    +       KE+ +   L++ NV+          +  YLF EY   G LFD     
Sbjct: 41  DMKRAVDCPENIKKEICINKMLNHENVVK-FYGHRREGNIQYLFLEYCSGGELFDRIEPD 99

Query: 648 GCLENALDWASRY---SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL---KSLKEPQI 701
             +      A R+    +A     G+ +LH      I   D+   N+ L    +LK   I
Sbjct: 100 IGMPE--PDAQRFFHQLMA-----GVVYLH---GIGITHRDIKPENLLLDERDNLK---I 146

Query: 702 GDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVY--------SFGVILL 753
            D  L  V   +     L+ + G++ Y+ PE        +    +        S G++L 
Sbjct: 147 SDFGLATVFRYNNRERLLNKMCGTLPYVAPE-------LLKRREFHAEPVDVWSCGIVLT 199

Query: 754 ELLTGK----TAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTV 804
            +L G+       +   E + W  +      K        +    LA+  ++L  
Sbjct: 200 AMLAGELPWDQPSDSCQEYSDWKEK------KTYLNPWKKIDSAPLALLHKILVE 248

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.7 bits (107), Expect = 4e-05
 Identities = 24/172 (13%), Positives = 61/172 (35%), Gaps = 21/172 (12%)

Query: 280 NGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLL--STMNISWNSLSGSIPSFLSN 337
              L   L ++ +L  + ++              LK L   +  +  + +   + S L N
Sbjct: 161 QVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPN 220

Query: 338 LTNLVNLNLRQNNLNGSIPNSI-------TNMRSLIELQLGGNQLSGTIP------MMPP 384
           L  L  L +   +       ++           +L  L +   +    +        + P
Sbjct: 221 LEKL-VLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP 279

Query: 385 RLQIALNLSSNLF--EG--PIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQM 432
           +L+  +++S+ +   EG   +     ++  L+ +++  N  S E+ + L + 
Sbjct: 280 QLET-MDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.7 bits (107), Expect = 5e-05
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 19/125 (15%)

Query: 174 LRNLDLSYNKLLGVIPIDLLSH--PNLQTIDLSVNM-----------LEGSLPQNMSPNL 220
           L++L++    L   +  D+L    PNL+ + L V +                 ++  PNL
Sbjct: 195 LKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNL 254

Query: 221 VRLRLGTNLLIGEIPSATFTS--LEKLTYLELDNNSFTG----MIPQQLGSCRSLTLLNL 274
             L +        +      S  L +L  +++     T     ++   +   + L  +N+
Sbjct: 255 KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314

Query: 275 AQNEL 279
             N L
Sbjct: 315 KYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.6 bits (104), Expect = 1e-04
 Identities = 26/171 (15%), Positives = 58/171 (33%), Gaps = 23/171 (13%)

Query: 5   GGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNI--NLQFDELVSLKSLNLS 62
             +  L  L       +S+        L+ L+  S  L  ++  ++   +L +L+ L L 
Sbjct: 169 DAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227

Query: 63  KNKFNGFLPINL---------GKTKALEELVLSGNAFHGEIPKGIADYR---NLTLIDLS 110
               +     ++          +   L+ L +        + +   +      L  +D+S
Sbjct: 228 VGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287

Query: 111 ANNLSGS----VPDRIGELSKLEVLILSANNLDG----RLPTSLASITTLS 153
           A  L+      + D + ++  L+ + +  N L       L  SL     +S
Sbjct: 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVS 338

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.0 bits (100), Expect = 3e-04
 Identities = 22/140 (15%), Positives = 50/140 (35%), Gaps = 14/140 (10%)

Query: 320 MNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSL--IELQLGGNQLSG 377
             ISW      +   L  +  L NL ++  N          N++SL  I   L  + +  
Sbjct: 154 QEISWIEQ-VDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVED 212

Query: 378 TIPMMPP---RLQIALNLSSNLFEGPIPTTFARLNG-----LEVLDLSNNRFSGEIPQLL 429
            +    P   +L + + +    F+G +       +      L+ L + +      + ++ 
Sbjct: 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF 272

Query: 430 AQ---MPTLTQLLLTNNQLS 446
            +   +P L  + ++   L+
Sbjct: 273 LESDILPQLETMDISAGVLT 292

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.2 bits (98), Expect = 5e-04
 Identities = 28/171 (16%), Positives = 47/171 (27%), Gaps = 34/171 (19%)

Query: 53  LVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIA--DYRNLTLIDL- 109
           L ++  LN  K K    L I       L+ L +        + + I   D  NL  + L 
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227

Query: 110 --SANNLSGSVPDRI------GELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNK 161
               +       +             L+ L +        +         L +       
Sbjct: 228 VGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ------- 280

Query: 162 FSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSH----PNLQTIDLSVNML 208
                       L  +D+S   L       LL H     +L+ I++  N L
Sbjct: 281 ------------LETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 49/189 (25%), Positives = 76/189 (40%), Gaps = 34/189 (17%)

Query: 584 IKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTL 642
           +K LN   KI  L    K  +E++ L    + +++  L  V+++ +  ++  EY   G L
Sbjct: 41  VKILN-RQKIRSLDVVGKIKREIQNLKLFRHPHIIK-LYQVISTPTDFFMVMEYVSGGEL 98

Query: 643 FD--VLHGCLENALDWASRY--SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE 698
           FD    HG +E     A R    I   V     + H    + ++  DL   N+ L +   
Sbjct: 99  FDYICKHGRVEE--MEARRLFQQILSAV----DYCH---RHMVVHRDLKPENVLLDAHMN 149

Query: 699 PQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVY--------SFGV 750
            +I D  L  ++        L T  GS  Y  PE        ++G +Y        S GV
Sbjct: 150 AKIADFGLSNMMSDG---EFLRTSCGSPNYAAPE-------VISGRLYAGPEVDIWSCGV 199

Query: 751 ILLELLTGK 759
           IL  LL G 
Sbjct: 200 ILYALLCGT 208

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 28/168 (16%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY 660
           KF  E  ++  L + +++  +  ++  +  ++  E  P G L   L    +N+L   +  
Sbjct: 59  KFMSEAVIMKNLDHPHIVKLIG-IIEEEPTWIIMELYPYGELGHYLERN-KNSLKVLTLV 116

Query: 661 SIAVGVAQGLAFL------HGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK 714
             ++ + + +A+L      H          D++ RNI + S +  ++GD  L + I+   
Sbjct: 117 LYSLQICKAMAYLESINCVH---------RDIAVRNILVASPECVKLGDFGLSRYIEDE- 166

Query: 715 STGSLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
                     SV  +P     PE     R T A +V+ F V + E+L+
Sbjct: 167 -----DYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILS 209

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.7 bits (108), Expect = 5e-05
 Identities = 44/267 (16%), Positives = 88/267 (32%), Gaps = 27/267 (10%)

Query: 196 PNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSF 255
           P +++++L         P     NLV    G  +       A  +S   L  + L     
Sbjct: 66  PKVRSVELK------GKPHFADFNLVPDGWGGYVYPW--IEAMSSSYTWLEEIRLKRMVV 117

Query: 256 TGMIPQQLG-SCRSLTLLNLAQNEL--NGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFS 312
           T    + +  S ++  +L L+  E      L     +   L+ ++L+ + +        S
Sbjct: 118 TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS 177

Query: 313 QL----KLLSTMNISWNSLS---GSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSL 365
                   L ++NIS  +      ++   ++   NL +L L +      +   +     L
Sbjct: 178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQL 237

Query: 366 IELQLGGNQLSGTIPMMPPRLQIALNLSS--------NLFEGPIPTTFARLNGLEVLDLS 417
            EL  GG        +                     +     +P  ++  + L  L+LS
Sbjct: 238 EELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLS 297

Query: 418 NNRFSGE-IPQLLAQMPTLTQLLLTNN 443
                   + +LL Q P L +L + + 
Sbjct: 298 YATVQSYDLVKLLCQCPKLQRLWVLDY 324

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 33/216 (15%), Positives = 76/216 (35%), Gaps = 17/216 (7%)

Query: 174 LRNLDLSYNKLLGVIPIDLLSH--PNLQTIDLSVNMLEGSLPQNMS------PNLVRLRL 225
            + L LS  +      +  ++    NL+ +DL  + ++      +S       +LV L +
Sbjct: 132 FKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNI 191

Query: 226 -GTNLLIGEIP-SATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLA------QN 277
                 +         T    L  L+L+       +   L     L  L         + 
Sbjct: 192 SCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRP 251

Query: 278 ELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSG-SIPSFLS 336
           ++   L + L     L+ ++   + +   +P+ +S    L+T+N+S+ ++    +   L 
Sbjct: 252 DVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLC 311

Query: 337 NLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGG 372
               L  L +     +  +    +  + L EL++  
Sbjct: 312 QCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 44.9 bits (107), Expect = 6e-05
 Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 20/164 (12%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY 660
           KF +E   + +  + +++  +  V+  +  ++  E    G L   L    + +LD AS  
Sbjct: 62  KFLQEALTMRQFDHPHIVKLIG-VITENPVWIIMELCTLGELRSFLQVR-KYSLDLASLI 119

Query: 661 SIAVGVAQGLAFL--HGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGS 718
             A  ++  LA+L    F        D++ RN+ + S    ++GD  L + ++ S     
Sbjct: 120 LYAYQLSTALAYLESKRFVHR-----DIAARNVLVSSNDCVKLGDFGLSRYMEDS----- 169

Query: 719 LSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
            +    S G +P     PE     R T A +V+ FGV + E+L 
Sbjct: 170 -TYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILM 212

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 44.5 bits (106), Expect = 8e-05
 Identities = 36/183 (19%), Positives = 70/183 (38%), Gaps = 41/183 (22%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGC----------- 649
           +F  E  +  +L + NV+  L  V       + + Y   G L + L              
Sbjct: 58  EFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDD 117

Query: 650 ---LENALDWASRYSIAVGVAQGLAFL--HGFTSNPILLLDLSTRNIFLKSLKEPQIGDI 704
              +++AL+      +   +A G+ +L  H          DL+TRN+ +      +I D+
Sbjct: 118 DRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHK-----DLATRNVLVYDKLNVKISDL 172

Query: 705 ELCKVIDPS----KSTGSLSTVAGSVGYIP-----PEYAYTMRV-TMAGNVYSFGVILLE 754
            L + +  +        SL         +P     PE A      ++  +++S+GV+L E
Sbjct: 173 GLFREVYAADYYKLLGNSL---------LPIRWMAPE-AIMYGKFSIDSDIWSYGVVLWE 222

Query: 755 LLT 757
           + +
Sbjct: 223 VFS 225

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 44.5 bits (106), Expect = 9e-05
 Identities = 43/183 (23%), Positives = 66/183 (36%), Gaps = 43/183 (23%)

Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY- 660
           F +E E+L  L + +++         D   + +EY   G L   L     +A+       
Sbjct: 64  FQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQP 123

Query: 661 -------------SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC 707
                         IA  +A G+ +L    S   +  DL+TRN          +G   L 
Sbjct: 124 RQAKGELGLSQMLHIASQIASGMVYL---ASQHFVHRDLATRNCL--------VGANLLV 172

Query: 708 KVIDPSKSTGSLS--------TVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLE 754
           K+ D     G +S           G    +P     PE     + T   +V+SFGVIL E
Sbjct: 173 KIGD----FG-MSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWE 227

Query: 755 LLT 757
           + T
Sbjct: 228 IFT 230

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 40/182 (21%), Positives = 64/182 (35%), Gaps = 42/182 (23%)

Query: 602 FDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY- 660
           F +E E+L  L + +++             + +EY   G L   L     +A   A    
Sbjct: 90  FQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGED 149

Query: 661 ------------SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK 708
                       ++A  VA G+ +L        +  DL+TRN          +G   + K
Sbjct: 150 VAPGPLGLGQLLAVASQVAAGMVYL---AGLHFVHRDLATRNCL--------VGQGLVVK 198

Query: 709 VID-------PSKSTGSLSTVAGSVGYIP-----PEYAYTMRV-TMAGNVYSFGVILLEL 755
           + D        S          G    +P     PE +   R  T   +V+SFGV+L E+
Sbjct: 199 IGDFGMSRDIYSTDY----YRVGGRTMLPIRWMPPE-SILYRKFTTESDVWSFGVVLWEI 253

Query: 756 LT 757
            T
Sbjct: 254 FT 255

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 40/178 (22%), Positives = 66/178 (37%), Gaps = 47/178 (26%)

Query: 604 KELEVLGKLSNSNVMTPLAYVL---ASDSAYLFYEYAPKGTLFDVL-HGCLENALDWASR 659
           +E+ +L KL + NV+  L  VL     D  Y+ +E   +G + +V     L    D A  
Sbjct: 85  QEIAILKKLDHPNVVK-LVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSE--DQARF 141

Query: 660 YSIAVGVAQGLAFLHGFTSNPI---------LLLDLSTRNIFLKSLKEPQIGDIELCKVI 710
           Y     + +G+ +LH      I         LL+     +I                K+ 
Sbjct: 142 Y--FQDLIKGIEYLH---YQKIIHRDIKPSNLLVG-EDGHI----------------KIA 179

Query: 711 D------PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAG---NVYSFGVILLELLTGK 759
           D         S   LS   G+  ++ PE     R   +G   +V++ GV L   + G+
Sbjct: 180 DFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQ 237

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 52/285 (18%), Positives = 94/285 (32%), Gaps = 45/285 (15%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSN-SNVMT------ 619
           F+  Y+A  + SG  Y +K+L  +++      +    +E+  + KLS   N++       
Sbjct: 41  FAFVYEAQDVGSGREYALKRLLSNEE----EKNRAIIQEVCFMKKLSGHPNIVQFCSAAS 96

Query: 620 -PLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENA-LDWASRYSIAVGVAQGLAFLHGFT 677
                     + +L      KG L + L        L   +   I     + +  +H   
Sbjct: 97  IGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQK 156

Query: 678 SNPILLLDLSTRNIFLKSLKEPQIGD----IELCKVIDPSKSTGSLSTVA------GSVG 727
             PI+  DL   N+ L +    ++ D      +    D S S    + V        +  
Sbjct: 157 P-PIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPM 215

Query: 728 YIPPEYAYTMRVTMAGN---VYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDH 784
           Y  PE          G    +++ G IL  L   +     G +L                
Sbjct: 216 YRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLR--------------- 260

Query: 785 ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
           I++   S      +  +   L    A + V+PE R  +  V+  L
Sbjct: 261 IVNGKYSIPPHDTQYTVFHSL--IRAMLQVNPEERLSIAEVVHQL 303

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 40/192 (20%), Positives = 68/192 (35%), Gaps = 24/192 (12%)

Query: 578 SGMSYFIKKLNWSDKIFQL-GSHHKFDKELEVLGKLSNSNV--MTPLAYVLASDSA-YLF 633
           +G  Y +K L+   +I    G     + E  +L  +S  +   +  ++Y   +       
Sbjct: 213 TGKMYAMKCLD-KKRIKMKQGETLALN-ERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFI 270

Query: 634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL 693
            +    G L   L      +      Y  A  +  GL  +H   +  ++  DL   NI L
Sbjct: 271 LDLMNGGDLHYHLSQHGVFSEADMRFY--AAEIILGLEHMH---NRFVVYRDLKPANILL 325

Query: 694 KSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE-----YAYTMRVTMAGNVYSF 748
                 +I D+ L       K         G+ GY+ PE      AY        + +S 
Sbjct: 326 DEHGHVRISDLGLACDFSKKKP----HASVGTHGYMAPEVLQKGVAYDSSA----DWFSL 377

Query: 749 GVILLELLTGKT 760
           G +L +LL G +
Sbjct: 378 GCMLFKLLRGHS 389

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 23/172 (13%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSA------YLFYEYAPKGTLFDVLHGCL---- 650
           +F +E   + +  + +V   +   L S +        +   +   G L   L        
Sbjct: 71  EFLREAACMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGEN 130

Query: 651 ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI 710
              L   +     V +A G+ +L   +S   +  DL+ RN  L       + D  L + I
Sbjct: 131 PFNLPLQTLVRFMVDIACGMEYL---SSRNFIHRDLAARNCMLAEDMTVCVADFGLSRKI 187

Query: 711 DPSKSTGSLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
                        G    +P      E       T+  +V++FGV + E++T
Sbjct: 188 YSGDYY-----RQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMT 234

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 35/210 (16%), Positives = 68/210 (32%), Gaps = 36/210 (17%)

Query: 568 FSTYYKAV-MPSGMSY---FIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAY 623
           FS   + +   +G  +    +    ++       S     +E  +   L + +++  L  
Sbjct: 37  FSVVRRCINRETGQQFAVKIVDVAKFTSS--PGLSTEDLKREASICHMLKHPHIVELLET 94

Query: 624 VLASDSAYLFYEYAPKGTLFD--VLHGCLENALDWASRYS------IAVGVAQGLAFLHG 675
             +    Y+ +E+     L    V         D    YS          + + L + H 
Sbjct: 95  YSSDGMLYMVFEFMDGADLCFEIVKRA------DAGFVYSEAVASHYMRQILEALRYCH- 147

Query: 676 FTSNPILLLDLSTRNIFLKSLKEPQ---IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE 732
              N I+  D+    + L S +      +G   +   +  S          G+  ++ PE
Sbjct: 148 --DNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLV--AGGRVGTPHFMAPE 203

Query: 733 ----YAYTMRVTMAGNVYSFGVILLELLTG 758
                 Y   V +    +  GVIL  LL+G
Sbjct: 204 VVKREPYGKPVDV----WGCGVILFILLSG 229

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 34/161 (21%), Positives = 61/161 (37%), Gaps = 15/161 (9%)

Query: 605 ELEVLGKLSNSNVMTPLAYVLASDSA-YLFYEYAPKGTLFDVLHGCLENA----LDWASR 659
           E ++L K+ +S  +  LAY   + +   L       G +   ++   E+        A  
Sbjct: 235 EKKILAKV-HSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIF 293

Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK-VIDPSKSTGS 718
           Y     +  GL  LH      I+  DL   N+ L      +I D+ L   +      T  
Sbjct: 294 Y--TAQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKT-- 346

Query: 719 LSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK 759
               AG+ G++ PE         + + ++ GV L E++  +
Sbjct: 347 -KGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAAR 386

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 29/170 (17%)

Query: 604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVL---HGCLENALDWASRY 660
           +E+ +   L + N++  L     +    +F E  P G+L  +L    G L++       Y
Sbjct: 68  EEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFY 127

Query: 661 SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS----LKEPQIGDIELCKVIDPSKST 716
           +    + +GL +LH    N I+  D+   N+ + +    LK   I D    K +  +   
Sbjct: 128 TKQ--ILEGLKYLH---DNQIVHRDIKGDNVLINTYSGVLK---ISDFGTSKRL--AGIN 177

Query: 717 GSLSTVAGSVGYIPPEYAYTMRVTMAGNVY-------SFGVILLELLTGK 759
               T  G++ Y+ PE      +      Y       S G  ++E+ TGK
Sbjct: 178 PCTETFTGTLQYMAPEI-----IDKGPRGYGKAADIWSLGCTIIEMATGK 222

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 29/150 (19%), Positives = 49/150 (32%), Gaps = 48/150 (32%)

Query: 631 YLFYEYA-PKGTLFD--VLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPI------ 681
            L  E   P   LFD     G L+  L  A  +     V + +   H   +  +      
Sbjct: 124 VLILERPEPVQDLFDFITERGALQEEL--ARSF--FWQVLEAVRHCH---NCGVLHRDIK 176

Query: 682 ---LLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST----GSLSTVAGSVGYIPPEY- 733
              +L+DL+   +                K+ID            +   G+  Y PPE+ 
Sbjct: 177 DENILIDLNRGEL----------------KLIDFGSGALLKDTVYTDFDGTRVYSPPEWI 220

Query: 734 ---AYT-MRVTMAGNVYSFGVILLELLTGK 759
               Y          V+S G++L +++ G 
Sbjct: 221 RYHRYHGRSAA----VWSLGILLYDMVCGD 246

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 45/211 (21%), Positives = 83/211 (39%), Gaps = 36/211 (17%)

Query: 568 FSTYYKAV-MPSGMSYFIK-----KLNWSDKIFQLGSHHKFDKELEVLGKLSN-SNVMTP 620
            S   + V   +G  + +K         S +  +        +E  +L +++   +++T 
Sbjct: 107 SSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLE-EVREATRRETHILRQVAGHPHIITL 165

Query: 621 LAYVLASDSAYLFYEYAPKGTLFD--VLHGCL-ENALDWASRYSIAVGVAQGLAFLHGFT 677
           +    +S   +L ++   KG LFD       L E          I   + + ++FLH   
Sbjct: 166 IDSYESSSFMFLVFDLMRKGELFDYLTEKVALSEKE---TRS--IMRSLLEAVSFLH--- 217

Query: 678 SNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE----- 732
           +N I+  DL   NI L    + ++ D      ++P +    L  + G+ GY+ PE     
Sbjct: 218 ANNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEK---LRELCGTPGYLAPEILKCS 274

Query: 733 -----YAYTMRVTMAGNVYSFGVILLELLTG 758
                  Y   V    ++++ GVIL  LL G
Sbjct: 275 MDETHPGYGKEV----DLWACGVILFTLLAG 301

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 42.2 bits (100), Expect = 5e-04
 Identities = 41/188 (21%), Positives = 65/188 (34%), Gaps = 50/188 (26%)

Query: 602 FDKELEVLGKLSN-SNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY 660
              EL+VL  L N  N++  L          +  EY   G L + L    ++ +   +  
Sbjct: 73  LMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSP 132

Query: 661 ----------------SIAVGVAQGLAFL------HGFTSNPILLLDLSTRNIFLKSLKE 698
                           S +  VA+G+AFL      H          DL+ RNI L   + 
Sbjct: 133 AIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHR---------DLAARNILLTHGRI 183

Query: 699 PQIGDIELCKVIDPS----KSTGSLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFG 749
            +I D  L + I           +          +P     PE  +    T   +V+S+G
Sbjct: 184 TKICDFGLARDIKNDSNYVVKGNAR---------LPVKWMAPESIFNCVYTFESDVWSYG 234

Query: 750 VILLELLT 757
           + L EL +
Sbjct: 235 IFLWELFS 242

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 41/182 (22%), Positives = 67/182 (36%), Gaps = 40/182 (21%)

Query: 602 FDKELEVLGKLSN-SNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY 660
              E+E++  +    N++  L         Y+  EYA KG L + L       L+++   
Sbjct: 121 LISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNP 180

Query: 661 --------------SIAVGVAQGLAFL------HGFTSNPILLLDLSTRNIFLKSLKEPQ 700
                         S A  VA+G+ +L      H          DL+ RN+ +      +
Sbjct: 181 SHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHR---------DLAARNVLVTEDNVMK 231

Query: 701 IGDIELCKVIDPSKSTGSLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLEL 755
           I D  L + I              + G +P     PE  +    T   +V+SFGV+L E+
Sbjct: 232 IADFGLARDIH-----HIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEI 286

Query: 756 LT 757
            T
Sbjct: 287 FT 288

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 38/185 (20%), Positives = 68/185 (36%), Gaps = 46/185 (24%)

Query: 602 FDKELEVLGKLSN-SNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY 660
              E+E++  +    N++  L         Y+  EYA KG L + L       ++++   
Sbjct: 87  LVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDI 146

Query: 661 --------------SIAVGVAQGLAFL------HGFTSNPILLLDLSTRNIFL---KSLK 697
                         S    +A+G+ +L      H          DL+ RN+ +     +K
Sbjct: 147 NRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHR---------DLAARNVLVTENNVMK 197

Query: 698 EPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVIL 752
              I D  L + I+             + G +P     PE  +    T   +V+SFGV++
Sbjct: 198 ---IADFGLARDIN-----NIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLM 249

Query: 753 LELLT 757
            E+ T
Sbjct: 250 WEIFT 254

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 34/171 (19%), Positives = 58/171 (33%), Gaps = 22/171 (12%)

Query: 601 KFDKELEVLGKLSNSNVMTPLAYVLASDSA-----YLFYEYAPKGTLFDVLHGCL----E 651
           +F  E   +   S+ NV+  L   +   S       +   +   G L   L         
Sbjct: 82  EFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGP 141

Query: 652 NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID 711
             +   +     V +A G+ +L   ++   L  DL+ RN  L+      + D  L K I 
Sbjct: 142 KHIPLQTLLKFMVDIALGMEYL---SNRNFLHRDLAARNCMLRDDMTVCVADFGLSKKIY 198

Query: 712 PSKSTGSLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
                       G +  +P      E       T   +V++FGV + E+ T
Sbjct: 199 SGDYY-----RQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIAT 244

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 38/185 (20%), Positives = 68/185 (36%), Gaps = 46/185 (24%)

Query: 602 FDKELEVLGKLSN-SNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRY 660
              E+E++  +    N++  L         Y+  EYA KG L + L       ++++   
Sbjct: 133 LVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDI 192

Query: 661 --------------SIAVGVAQGLAFL------HGFTSNPILLLDLSTRNIFL---KSLK 697
                         S    +A+G+ +L      H          DL+ RN+ +     +K
Sbjct: 193 NRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHR---------DLAARNVLVTENNVMK 243

Query: 698 EPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVIL 752
              I D  L + I+             + G +P     PE  +    T   +V+SFGV++
Sbjct: 244 ---IADFGLARDIN-----NIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLM 295

Query: 753 LELLT 757
            E+ T
Sbjct: 296 WEIFT 300

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 13/102 (12%)

Query: 661 SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLS 720
             +  VA+G+ FL    S   +  DL+ RNI L      +I D  L + I          
Sbjct: 197 CYSFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDI-----YKDPD 248

Query: 721 TVAGSVGYIP-----PEYAYTMRVTMAGNVYSFGVILLELLT 757
            V      +P     PE  +    T+  +V+SFGV+L E+ +
Sbjct: 249 YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFS 290

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 37/141 (26%), Positives = 48/141 (34%), Gaps = 31/141 (21%)

Query: 631 YLFYEYAPKGTLFD--VLHGCLENALDWASRY--SIAVGVAQGLAFLHGFTSNPILLLDL 686
           YL  EYA  G +FD  V HG ++     A      I   V     + H      I+  DL
Sbjct: 90  YLIMEYASGGEVFDYLVAHGRMKE--KEARSKFRQIVSAV----QYCH---QKRIVHRDL 140

Query: 687 STRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVY 746
              N+ L +    +I D             G L    G+  Y  PE          G  Y
Sbjct: 141 KAENLLLDADMNIKIADFGFSNEFTVG---GKLDAFCGAPPYAAPE-------LFQGKKY 190

Query: 747 --------SFGVILLELLTGK 759
                   S GVIL  L++G 
Sbjct: 191 DGPEVDVWSLGVILYTLVSGS 211

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 34/103 (33%), Positives = 40/103 (38%), Gaps = 12/103 (11%)

Query: 661 SIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID---PSKSTG 717
             A  + Q L  LH    N I+  DL   NI LK      I      KVID         
Sbjct: 204 KFAHSILQCLDALH---KNRIIHCDLKPENILLKQQGRSGI------KVIDFGSSCYEHQ 254

Query: 718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKT 760
            + T   S  Y  PE     R  M  +++S G IL ELLTG  
Sbjct: 255 RVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYP 297

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	833
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	100.0
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.89
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.89
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.89
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.85
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.85
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.83
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.8
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.79
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.78
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.77
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.77
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.76
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.75
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.73
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.73
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.71
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.69
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.66
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.66
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.65
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.63
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.61
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.58
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.56
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.56
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.53
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.48
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.44
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.43
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.42
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.38
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.24
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.22
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.21
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.2
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.16
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.14
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	99.0
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.86
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.69
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.61
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.53
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.51
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.49
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.49
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.44
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.39
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.33
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.26
3ats_A	357	Putative uncharacterized protein; hypothetical pro	98.11
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.07
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	97.91
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	97.76
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.6
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	97.59
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.54
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.46
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	97.41
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.21
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.99
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	96.92
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.81
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.72
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	96.62
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	96.47
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	96.41
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	96.17
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	96.01
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	95.92
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	95.56
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	95.45
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	95.21
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	93.28
3mes_A	424	Choline kinase; malaria, structural genomics, stru	91.12
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	87.15
4ann_A	215	ESSB; membrane protein, membrane secretion, ESS ty	81.41
4ano_A	219	ESSB; membrane protein, membrane secretion, ESS ty	81.19

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.8e-59  Score=564.31  Aligned_cols=467  Identities=36%  Similarity=0.535  Sum_probs=405.3

Q ss_pred             CCCCCCCEEECCCCCCCC-cccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEE
Q 003296            5 GGIDGLKLLNFSKNELVS-LPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEEL   83 (833)
Q Consensus         5 ~~l~~L~~L~ls~N~l~~-i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L   83 (833)
                      +++++|++|++++|.+++ +|.|..+++|++|+|++|++++..+..|.++++|++|+|++|.+++..|..  .+++|++|
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L  274 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL  274 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEE
T ss_pred             ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEE
Confidence            466777777788887776 466777888888888888888777777888888888888888887766654  77788888


Q ss_pred             EccCCcCcccCCccccCC-CCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcc-cccCCccCcccccccc
Q 003296           84 VLSGNAFHGEIPKGIADY-RNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTS-LASITTLSRFAANQNK  161 (833)
Q Consensus        84 ~L~~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~l~l~~n~  161 (833)
                      +|++|.+++.+|..+..+ ++|++|+|++|++++.+|..|+++++|++|+|++|.+++.+|.. +..+++|+.|++++|+
T Consensus       275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~  354 (768)
T 3rgz_A          275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE  354 (768)
T ss_dssp             ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred             ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence            888888887888887765 88888889888888888888888899999999999888777765 8888889999999998


Q ss_pred             ccccCChhhh--h-cCCEEecccccccccCCccCCC--CCCCCEEecccccCcccCCCCCC--cCCcEEEcCCccccCCC
Q 003296          162 FSGSVPGGIT--R-FLRNLDLSYNKLLGVIPIDLLS--HPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEI  234 (833)
Q Consensus       162 l~~~~p~~~~--~-~L~~L~Ls~N~l~~~~~~~~~~--~~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~l~~n~l~~~~  234 (833)
                      +++.+|..+.  . .|+.|+|++|++.+.+|..+..  +++|++|++++|.+++.+|..+.  ++|+.|++++|.+.+.+
T Consensus       355 l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  434 (768)
T 3rgz_A          355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI  434 (768)
T ss_dssp             EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred             cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc
Confidence            8888887763  2 7899999999998888887776  78899999999999988888775  78999999999988754


Q ss_pred             CccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCC
Q 003296          235 PSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQL  314 (833)
Q Consensus       235 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  314 (833)
                       +..|..+++|++|+|++|++++.+|..+..+++|++|+|++|++.+.+|..+..+++|+.|++++|++++.+|..|..+
T Consensus       435 -p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l  513 (768)
T 3rgz_A          435 -PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL  513 (768)
T ss_dssp             -CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             -cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcC
Confidence             4578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccCccc-----------------------------------
Q 003296          315 KLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSI-----------------------------------  359 (833)
Q Consensus       315 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~-----------------------------------  359 (833)
                      ++|++|++++|++++.+|..+..+++|+.|+|++|+++|.+|..+                                   
T Consensus       514 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (768)
T 3rgz_A          514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL  593 (768)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred             CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999999988777543                                   


Q ss_pred             -----------------------------------cCCCCCCEEEccCCcCCccCCCCccccc--ceeeccccccccchh
Q 003296          360 -----------------------------------TNMRSLIELQLGGNQLSGTIPMMPPRLQ--IALNLSSNLFEGPIP  402 (833)
Q Consensus       360 -----------------------------------~~l~~L~~L~L~~N~l~~~~p~~~~~~~--~~L~Ls~N~l~~~~p  402 (833)
                                                         ..+++|+.|+|++|+++|.+|.....+.  +.|+|++|.++|.+|
T Consensus       594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip  673 (768)
T 3rgz_A          594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP  673 (768)
T ss_dssp             EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred             cccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC
Confidence                                               3356799999999999999998776655  679999999999999


Q ss_pred             hhhccCCCCCEEecccCcCccccchhccCCCCCCeeeCcCCcccccCCCCCcccccc---cCCCcccccccCCCC
Q 003296          403 TTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVSVD---TTGNLKLINVTAPDT  474 (833)
Q Consensus       403 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~---~~~n~~l~~~~~~~~  474 (833)
                      ..|+.+++|++|||++|+++|.+|..+..+++|++|++++|+++|.+|....+..+.   ..||+.+||.+.+.+
T Consensus       674 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C  748 (768)
T 3rgz_A          674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC  748 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCC
T ss_pred             hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCC
Confidence            999999999999999999999999999999999999999999999999877766654   449999999876544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2e-56  Score=537.78  Aligned_cols=442  Identities=34%  Similarity=0.516  Sum_probs=360.8

Q ss_pred             CCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEcc
Q 003296            7 IDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLS   86 (833)
Q Consensus         7 l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~   86 (833)
                      +++|++|++++|.+++...+..+++|++|+|++|++++..+. |+++++|++|+|++|++++..|..|..+++|++|+|+
T Consensus       177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  255 (768)
T 3rgz_A          177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS  255 (768)
T ss_dssp             CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred             CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence            334444444444443332234556666666666666665554 6666666666666666666666666666666666666


Q ss_pred             CCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCC-CCCcEEECcCCcCCCCCCcccccCCccCcccccccccccc
Q 003296           87 GNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGEL-SKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGS  165 (833)
Q Consensus        87 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~  165 (833)
                      +|.+++.+|..  .+++|++|+|++|++++.+|..+..+ ++|++|+|++|.+++.+|..|+.+++|+.|++++|.+++.
T Consensus       256 ~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  333 (768)
T 3rgz_A          256 SNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE  333 (768)
T ss_dssp             SSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred             CCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCc
Confidence            66666655544  66667777777777766777777664 8888888888888888888888888888888888888877


Q ss_pred             CChh-h--hhcCCEEecccccccccCCccCCCCC-CCCEEecccccCcccCCCCCC----cCCcEEEcCCccccCCCCcc
Q 003296          166 VPGG-I--TRFLRNLDLSYNKLLGVIPIDLLSHP-NLQTIDLSVNMLEGSLPQNMS----PNLVRLRLGTNLLIGEIPSA  237 (833)
Q Consensus       166 ~p~~-~--~~~L~~L~Ls~N~l~~~~~~~~~~~~-~L~~L~Ls~N~l~~~~p~~~~----~~L~~L~l~~n~l~~~~~~~  237 (833)
                      +|.. +  .+.|++|+|++|++.+.+|..+..++ +|++|++++|.+++.+|..+.    ++|+.|++++|.+.+.+| .
T Consensus       334 ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~  412 (768)
T 3rgz_A          334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP-P  412 (768)
T ss_dssp             CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC-G
T ss_pred             CCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC-H
Confidence            7765 3  45688888888888888888777776 888888888888887776653    578999999998876544 5


Q ss_pred             ccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcC
Q 003296          238 TFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLL  317 (833)
Q Consensus       238 ~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  317 (833)
                      .|..+++|++|+|++|++++..|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..|..+++|
T Consensus       413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  492 (768)
T 3rgz_A          413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL  492 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCC
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeccCCcCcccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCccCCCCccc------------
Q 003296          318 STMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPR------------  385 (833)
Q Consensus       318 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~------------  385 (833)
                      ++|++++|++++.+|..|+.+++|++|+|++|++++.+|..+..+++|+.|++++|+++|.+|.....            
T Consensus       493 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~  572 (768)
T 3rgz_A          493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG  572 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred             CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999888743211            


Q ss_pred             ------------------------------------------------------------ccceeeccccccccchhhhh
Q 003296          386 ------------------------------------------------------------LQIALNLSSNLFEGPIPTTF  405 (833)
Q Consensus       386 ------------------------------------------------------------~~~~L~Ls~N~l~~~~p~~~  405 (833)
                                                                                  ....|||++|.++|.+|..|
T Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l  652 (768)
T 3rgz_A          573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI  652 (768)
T ss_dssp             CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH
Confidence                                                                        12468999999999999999


Q ss_pred             ccCCCCCEEecccCcCccccchhccCCCCCCeeeCcCCcccccCCCC
Q 003296          406 ARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKF  452 (833)
Q Consensus       406 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~  452 (833)
                      +.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..
T Consensus       653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~  699 (768)
T 3rgz_A          653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA  699 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred             hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence            99999999999999999999999999999999999999999999863

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=2.4e-57  Score=479.57  Aligned_cols=257  Identities=19%  Similarity=0.275  Sum_probs=210.0

Q ss_pred             hcCCccccccCcccEEEEEEc------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296          556 VANPLNVELKTRFSTYYKAVM------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS  629 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~  629 (833)
                      +++..+.||+|+||+||+|++      .+++.||||+++..   ......++|.+|+++|++++|||||+++|+|.+++.
T Consensus        27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~---~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~  103 (308)
T 4gt4_A           27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDK---AEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQP  103 (308)
T ss_dssp             GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC----CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcc---cChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCE
Confidence            345668899999999999986      25789999999532   123346789999999999999999999999999999


Q ss_pred             eEEEEeeCCCCChhhhhhcCC--------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC
Q 003296          630 AYLFYEYAPKGTLFDVLHGCL--------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS  695 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~  695 (833)
                      .+||||||++|||.++|+...              ...++|.++..|+.|||+||+|||   +.+||||||||+|||+++
T Consensus       104 ~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLK~~NILl~~  180 (308)
T 4gt4_A          104 LSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS---SHHVVHKDLATRNVLVYD  180 (308)
T ss_dssp             CEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECG
T ss_pred             EEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCccccceEECC
Confidence            999999999999999997532              135999999999999999999999   788999999999999999


Q ss_pred             CCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHH
Q 003296          696 LKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLR  774 (833)
Q Consensus       696 ~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~  774 (833)
                      ++.+||+|||+|+..............+||+.|||||++.++.|+.|+|||||||++|||+| |+.||.+... .+.+..
T Consensus       181 ~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~-~~~~~~  259 (308)
T 4gt4_A          181 KLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN-QDVVEM  259 (308)
T ss_dssp             GGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH-HHHHHH
T ss_pred             CCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCH-HHHHHH
Confidence            99999999999987654433333456789999999999999999999999999999999999 8999976443 222221


Q ss_pred             hhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          775 NSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                       ........      .      +..++.++.+++.+||+.||++||||+||+++|+..
T Consensus       260 -i~~~~~~~------~------p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~  304 (308)
T 4gt4_A          260 -IRNRQVLP------C------PDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW  304 (308)
T ss_dssp             -HHTTCCCC------C------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred             -HHcCCCCC------C------cccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence             11111110      0      112345788999999999999999999999999864

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-57  Score=477.03  Aligned_cols=259  Identities=23%  Similarity=0.320  Sum_probs=201.5

Q ss_pred             hcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      ++...+.||+|+||+||+|++.+  .||||+++....  .....++|.+|+++|++++|||||+++|+|. ++..|||||
T Consensus        37 ~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~--~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~-~~~~~iVmE  111 (307)
T 3omv_A           37 EVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDP--TPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVTQ  111 (307)
T ss_dssp             SCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEE
T ss_pred             HeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCC--CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-CCeEEEEEE
Confidence            45567889999999999998743  599999853221  1223578999999999999999999999886 467899999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      ||++|+|.++|+.. ...++|.++..|+.|||+||+|||   +.+||||||||+|||+++++.+||+|||+|+.......
T Consensus       112 y~~gGsL~~~l~~~-~~~l~~~~~~~i~~qia~gL~yLH---~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~  187 (307)
T 3omv_A          112 WCEGSSLYKHLHVQ-ETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSG  187 (307)
T ss_dssp             CCSSCBHHHHHHTS-CCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCSSSEEEETTEEEEECCCSSCBC------
T ss_pred             cCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCccCHHHEEECCCCcEEEeeccCceecccCCc
Confidence            99999999999854 346999999999999999999999   78999999999999999999999999999987654333


Q ss_pred             CCccccccccccccccccccC---CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          716 TGSLSTVAGSVGYIPPEYAYT---MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      .......+||+.|||||++.+   ..|+.|+|||||||++|||+||+.||.+.............. .     ..+....
T Consensus       188 ~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~-~-----~~p~~~~  261 (307)
T 3omv_A          188 SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRG-Y-----ASPDLSK  261 (307)
T ss_dssp             ------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTT-C-----CCCCSTT
T ss_pred             ceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHHHHhcC-C-----CCCCccc
Confidence            333456789999999999863   469999999999999999999999998655443322221111 1     1111111


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .   ....+.++.+++.+||+.||++||||.||+++|+.+
T Consensus       262 ~---~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l  298 (307)
T 3omv_A          262 L---YKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELL  298 (307)
T ss_dssp             S---CTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHH
T ss_pred             c---cccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence            1   112345788999999999999999999999998865

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=4.5e-57  Score=482.09  Aligned_cols=256  Identities=21%  Similarity=0.254  Sum_probs=202.2

Q ss_pred             hcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296          556 VANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS  629 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~  629 (833)
                      ++...+.||+|+||+||+|++.      +|+.||||+++...    ....++|.+|+++|++++|||||+++|+|.+++.
T Consensus        42 d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~----~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~  117 (329)
T 4aoj_A           42 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEAS----ESARQDFQREAELLTMLQHQHIVRFFGVCTEGRP  117 (329)
T ss_dssp             GEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCS----HHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred             HeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCC----HHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE
Confidence            4556788999999999999853      57899999995322    2235789999999999999999999999999999


Q ss_pred             eEEEEeeCCCCChhhhhhcCC-------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC
Q 003296          630 AYLFYEYAPKGTLFDVLHGCL-------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL  696 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~-------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~  696 (833)
                      .|||||||++|||.++++...             ...++|.+++.|+.|||+||+|||   +.+||||||||+|||++++
T Consensus       118 ~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLKp~NILl~~~  194 (329)
T 4aoj_A          118 LLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA---GLHFVHRDLATRNCLVGQG  194 (329)
T ss_dssp             EEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETT
T ss_pred             EEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecccccHhhEEECCC
Confidence            999999999999999997532             236999999999999999999999   7889999999999999999


Q ss_pred             CCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHh
Q 003296          697 KEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRN  775 (833)
Q Consensus       697 ~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~  775 (833)
                      +.+||+|||+|+..............+||+.|||||++.+..|+.++|||||||++|||+| |+.||.+..... .+.. 
T Consensus       195 ~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~-~~~~-  272 (329)
T 4aoj_A          195 LVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTE-AIDC-  272 (329)
T ss_dssp             TEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHH-HHHH-
T ss_pred             CcEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHH-HHHH-
Confidence            9999999999997754433333345789999999999999999999999999999999999 899997644322 2111 


Q ss_pred             hcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          776 SAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .......      ..+      ...+.++.+++.+||+.||++||||+||+++|+.+
T Consensus       273 i~~g~~~------~~p------~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l  317 (329)
T 4aoj_A          273 ITQGREL------ERP------RACPPEVYAIMRGCWQREPQQRHSIKDVHARLQAL  317 (329)
T ss_dssp             HHHTCCC------CCC------TTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHH
T ss_pred             HHcCCCC------CCc------ccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHH
Confidence            1111111      011      12345788999999999999999999999999875

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=1.9e-57  Score=478.18  Aligned_cols=257  Identities=21%  Similarity=0.273  Sum_probs=208.6

Q ss_pred             HhcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~  628 (833)
                      ++|...+.||+|+||+||+|++.      +|+.||||+++...    ....++|.+|+++|++++|||||+++|+|.+++
T Consensus        13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~----~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~   88 (299)
T 4asz_A           13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS----DNARKDFHREAELLTNLQHEHIVKFYGVCVEGD   88 (299)
T ss_dssp             GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCC----HHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCC----hHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCC
Confidence            35667789999999999999863      57899999995322    223578999999999999999999999999999


Q ss_pred             ceEEEEeeCCCCChhhhhhcCC-----------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCL-----------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK  697 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~-----------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~  697 (833)
                      ..|||||||++|||.++|+...           ...++|.+++.|+.|||+||+|||   +++||||||||+|||+++++
T Consensus        89 ~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDlKp~NILl~~~~  165 (299)
T 4asz_A           89 PLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENL  165 (299)
T ss_dssp             SEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGG
T ss_pred             EEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCccCHhhEEECCCC
Confidence            9999999999999999997532           246999999999999999999999   78899999999999999999


Q ss_pred             CceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhh
Q 003296          698 EPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNS  776 (833)
Q Consensus       698 ~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~  776 (833)
                      .+||+|||+|+..............+||+.|||||++.+..|+.|+|||||||++|||+| |+.||.+.... +.... .
T Consensus       166 ~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~-~~~~~-i  243 (299)
T 4asz_A          166 LVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN-EVIEC-I  243 (299)
T ss_dssp             CEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH-HHHHH-H
T ss_pred             cEEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHH-HHHHH-H
Confidence            999999999987654332222334679999999999999999999999999999999999 89999764432 22211 1


Q ss_pred             cccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          777 AQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ..+...      ..+      ...+.++.+++.+||+.||++||||+||++.|+++
T Consensus       244 ~~~~~~------~~p------~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~  287 (299)
T 4asz_A          244 TQGRVL------QRP------RTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNL  287 (299)
T ss_dssp             HHTCCC------CCC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HcCCCC------CCC------ccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence            111110      001      12345788999999999999999999999999875

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=6.4e-56  Score=464.63  Aligned_cols=251  Identities=18%  Similarity=0.239  Sum_probs=212.0

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++. +.........+.+.+|+++|++++|||||+++++|++++..|+|
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~-k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yiv  110 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILE-KRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG  110 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEE-HHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEE-HHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            4688999999999999999996 589999999994 33333445567899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||||+||+|.+++++  .+.+++.++..|+.||+.||+|||   +.+||||||||+|||+++++.+||+|||+|+.....
T Consensus       111 mEy~~gG~L~~~i~~--~~~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~  185 (311)
T 4aw0_A          111 LSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE  185 (311)
T ss_dssp             ECCCTTEEHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred             EecCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCC
Confidence            999999999999986  356999999999999999999999   789999999999999999999999999999987654


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      .......+.+||+.|||||++.+..|+.++||||+||++|||+||+.||.+.+.. +..........        .++. 
T Consensus       186 ~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~-~~~~~i~~~~~--------~~p~-  255 (311)
T 4aw0_A          186 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEG-LIFAKIIKLEY--------DFPE-  255 (311)
T ss_dssp             TTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHTCC--------CCCT-
T ss_pred             CCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHcCCC--------CCCc-
Confidence            4433456789999999999999999999999999999999999999999765432 22222111111        1111 


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVL  826 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl  826 (833)
                           ..+.++.+++.+||+.||++|||++|++
T Consensus       256 -----~~s~~~~dli~~lL~~dp~~R~t~~e~~  283 (311)
T 4aw0_A          256 -----KFFPKARDLVEKLLVLDATKRLGCEEME  283 (311)
T ss_dssp             -----TCCHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred             -----ccCHHHHHHHHHHccCCHhHCcChHHHc
Confidence                 1234678999999999999999999864

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=1.5e-55  Score=468.98  Aligned_cols=250  Identities=14%  Similarity=0.228  Sum_probs=209.5

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ..|+..+.||+|+||+||+|+. .+|+.||||++...    .....+.+.+|+++|++++|||||+++++|.+++.+|||
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~----~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iv  149 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLR----KQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVV  149 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGG----GCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecC----chhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            3477788999999999999997 48999999999422    233456799999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||||++|+|.++++.   ..+++.++..|+.||+.||+|||   +.+||||||||+|||++.++.+||+|||+|+.....
T Consensus       150 mEy~~gg~L~~~l~~---~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~  223 (346)
T 4fih_A          150 MEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE  223 (346)
T ss_dssp             ECCCTTEEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSS
T ss_pred             EeCCCCCcHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEECCCCCEEEecCcCceecCCC
Confidence            999999999999975   35999999999999999999999   789999999999999999999999999999987543


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      ..  ...+.+||+.|||||++.+..|+.++||||+||++|||++|+.||.+......+... ... .      .+...  
T Consensus       224 ~~--~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i-~~~-~------~~~~~--  291 (346)
T 4fih_A          224 VP--RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMI-RDN-L------PPRLK--  291 (346)
T ss_dssp             SC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHH-HHS-S------CCCCS--
T ss_pred             CC--cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHH-HcC-C------CCCCC--
Confidence            32  335689999999999999999999999999999999999999999865543322111 111 0      00111  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        .+...+.++.+++.+||+.||++|||++|+++|
T Consensus       292 --~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~H  324 (346)
T 4fih_A          292 --NLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH  324 (346)
T ss_dssp             --CGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             --ccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence              112334578899999999999999999999875

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=4e-56  Score=474.15  Aligned_cols=253  Identities=21%  Similarity=0.291  Sum_probs=204.1

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++.....  .....+.|.+|+++|++++|||||+++++|.+++.+|||
T Consensus        24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~--~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiV  101 (350)
T 4b9d_A           24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRM--SSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIV  101 (350)
T ss_dssp             CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTS--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHC--CHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEE
Confidence            3688889999999999999996 5799999999953221  122357899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||||+||+|.++++......+++.+++.|+.||+.||+|||   +.+||||||||+|||+++++.+||+|||+|+.....
T Consensus       102 mEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~  178 (350)
T 4b9d_A          102 MDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST  178 (350)
T ss_dssp             EECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHH
T ss_pred             EeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHHHEEECCCCCEEEcccccceeecCC
Confidence            99999999999998655567899999999999999999999   789999999999999999999999999999876422


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      .  ....+.+||+.|||||++.+..|+.++||||+||++|||+||+.||.+.... +........ . ...     ..  
T Consensus       179 ~--~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~-~~~~~i~~~-~-~~~-----~~--  246 (350)
T 4b9d_A          179 V--ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMK-NLVLKIISG-S-FPP-----VS--  246 (350)
T ss_dssp             H--HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHT-C-CCC-----CC--
T ss_pred             c--ccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH-HHHHHHHcC-C-CCC-----CC--
Confidence            1  1234578999999999999999999999999999999999999999865433 222222111 1 000     00  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                          ...+.++.+++.+||+.||++|||++|+++|
T Consensus       247 ----~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h  277 (350)
T 4b9d_A          247 ----LHYSYDLRSLVSQLFKRNPRDRPSVNSILEK  277 (350)
T ss_dssp             ----TTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             ----ccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence                1234568899999999999999999999875

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=3.4e-55  Score=457.44  Aligned_cols=247  Identities=21%  Similarity=0.273  Sum_probs=199.7

Q ss_pred             CCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec----CCceEE
Q 003296          558 NPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA----SDSAYL  632 (833)
Q Consensus       558 ~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~----~~~~~l  632 (833)
                      +..+.||+|+||+||+|.. .+|..||||++.....  .....+.|.+|+++|++++|||||+++++|.+    ++.+||
T Consensus        29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~--~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~l  106 (290)
T 3fpq_A           29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKL--TKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL  106 (290)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGS--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhC--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEE
Confidence            4456799999999999997 4799999999953221  12235689999999999999999999999875    345899


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCC--eeecCCCccceeeC-CCCCceeccceeeee
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNP--ILLLDLSTRNIFLK-SLKEPQIGDIELCKV  709 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~Nill~-~~~~~ki~dfgl~~~  709 (833)
                      |||||++|+|.+++++  ...+++..+..|+.||++||+|||   +.+  ||||||||+|||++ .++.+||+|||+|+.
T Consensus       107 vmEy~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~ylH---~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~  181 (290)
T 3fpq_A          107 VTELMTSGTLKTYLKR--FKVMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL  181 (290)
T ss_dssp             EEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred             EEeCCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCCCEEecccChhheeEECCCCCEEEEeCcCCEe
Confidence            9999999999999986  456999999999999999999999   555  99999999999998 479999999999986


Q ss_pred             eCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      ....    ...+.+||+.|||||++.+ +|+.++|||||||++|||+||+.||.+.............. .. ....   
T Consensus       182 ~~~~----~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i~~~-~~-~~~~---  251 (290)
T 3fpq_A          182 KRAS----FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSG-VK-PASF---  251 (290)
T ss_dssp             CCTT----SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTT-CC-CGGG---
T ss_pred             CCCC----ccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHHHHHHHHcC-CC-CCCC---
Confidence            4321    2356799999999998864 69999999999999999999999998665554433322211 10 0000   


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                             ....+.++.+++.+||+.||++|||++|+++|
T Consensus       252 -------~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~H  283 (290)
T 3fpq_A          252 -------DKVAIPEVKEIIEGCIRQNKDERYSIKDLLNH  283 (290)
T ss_dssp             -------GGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             -------CccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence                   11123467899999999999999999999875

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=2.4e-55  Score=466.13  Aligned_cols=251  Identities=16%  Similarity=0.137  Sum_probs=202.7

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +.|+..+.||+|+||+||+|+. .+|+.||||+++..         ..+.+|+++|++++|||||+++++|.+++.+|||
T Consensus        58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~---------~~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~iv  128 (336)
T 4g3f_A           58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLE---------VFRVEELVACAGLSSPRIVPLYGAVREGPWVNIF  128 (336)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETT---------TCCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHH---------HhHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            3566778899999999999997 57999999999421         1235799999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC-CceeccceeeeeeCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK-EPQIGDIELCKVIDP  712 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~-~~ki~dfgl~~~~~~  712 (833)
                      ||||+||+|.++++.  .+.+++.++..|+.||+.||+|||   +.+||||||||+|||++.++ .+||+|||+|+....
T Consensus       129 mEy~~gg~L~~~l~~--~~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~  203 (336)
T 4g3f_A          129 MELLEGGSLGQLIKQ--MGCLPEDRALYYLGQALEGLEYLH---TRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQP  203 (336)
T ss_dssp             ECCCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC--
T ss_pred             EeccCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccC
Confidence            999999999999986  356999999999999999999999   88999999999999999987 699999999998754


Q ss_pred             CCCCC---ccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          713 SKSTG---SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       713 ~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      .....   ....++||+.|||||++.+..|+.++|||||||++|||+||+.||.+....... ...........+     
T Consensus       204 ~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~-~~i~~~~~~~~~-----  277 (336)
T 4g3f_A          204 DGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLC-LKIASEPPPIRE-----  277 (336)
T ss_dssp             ----------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCH-HHHHHSCCGGGG-----
T ss_pred             CCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHH-HHHHcCCCCchh-----
Confidence            32211   123468999999999999999999999999999999999999999754321111 111111111000     


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                      +      +...+.++.+++.+||+.||++|||+.|++++|..
T Consensus       278 ~------~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~  313 (336)
T 4g3f_A          278 I------PPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGK  313 (336)
T ss_dssp             S------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             c------CccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHH
Confidence            1      11234578899999999999999999999998865

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=3.3e-54  Score=445.81  Aligned_cols=249  Identities=17%  Similarity=0.213  Sum_probs=193.0

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++.. .........+.|.+|+++|++++|||||++++++.+++..|+|
T Consensus        13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~-~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv   91 (275)
T 3hyh_A           13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINK-KVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV   91 (275)
T ss_dssp             -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEEC-C------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeH-HHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEE
Confidence            4688899999999999999997 5799999999953 2333334567899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||| +|+|.+++..  ...+++.++..++.|++.||+|||   +.+|+||||||+|||+++++.+||+|||+|+.....
T Consensus        92 mEy~-~g~L~~~l~~--~~~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~  165 (275)
T 3hyh_A           92 IEYA-GNELFDYIVQ--RDKMSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDG  165 (275)
T ss_dssp             EECC-CEEHHHHHHH--SCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTCCEEECCSSCC------
T ss_pred             EeCC-CCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCChHHeEECCCCCEEEeecCCCeecCCC
Confidence            9999 6899999986  456999999999999999999999   789999999999999999999999999999876533


Q ss_pred             CCCCccccccccccccccccccCCcc-cccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRV-TMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      .   ...+.+||+.|||||++.+..| +.++||||+||++|||+||+.||.+... .............        ++ 
T Consensus       166 ~---~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~-~~~~~~i~~~~~~--------~p-  232 (275)
T 3hyh_A          166 N---FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESI-PVLFKNISNGVYT--------LP-  232 (275)
T ss_dssp             ------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHTCCC--------CC-
T ss_pred             C---ccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHHcCCCC--------CC-
Confidence            2   2346789999999999998876 5799999999999999999999975432 2222222111111        11 


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                           ...+.++.+++.+||+.||++|||++|+++|
T Consensus       233 -----~~~s~~~~~li~~~L~~dP~~R~s~~eil~h  263 (275)
T 3hyh_A          233 -----KFLSPGAAGLIKRMLIVNPLNRISIHEIMQD  263 (275)
T ss_dssp             -----TTSCHHHHHHHHHHSCSSGGGSCCHHHHHHC
T ss_pred             -----CCCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence                 1123567899999999999999999999875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=9.9e-52  Score=485.75  Aligned_cols=457  Identities=22%  Similarity=0.254  Sum_probs=395.4

Q ss_pred             CCCCEEECCCCCCCCc-c-cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296            8 DGLKLLNFSKNELVSL-P-TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL   85 (833)
Q Consensus         8 ~~L~~L~ls~N~l~~i-~-~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   85 (833)
                      ..++.|++++|.|+++ | .|.++++|++|+|++|+|+++.|.+|.++++|++|+|++|++++..|..|+++++|++|+|
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            4689999999999997 3 5999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccC--cccccccccc
Q 003296           86 SGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLS--RFAANQNKFS  163 (833)
Q Consensus        86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~--~l~l~~n~l~  163 (833)
                      ++|.+++..|..|+++++|++|+|++|++++.....+..+++|++|+|++|.+++..|..|+.+++|+  .|++++|.++
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence            99999988888999999999999999999986655666699999999999999998899999999999  8899999988


Q ss_pred             ccCChhhhh-----------------------------------------------------cCCEEecccccccccCCc
Q 003296          164 GSVPGGITR-----------------------------------------------------FLRNLDLSYNKLLGVIPI  190 (833)
Q Consensus       164 ~~~p~~~~~-----------------------------------------------------~L~~L~Ls~N~l~~~~~~  190 (833)
                      +..|..+..                                                     .|+.|++++|++.+..+.
T Consensus       193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~  272 (606)
T 3t6q_A          193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN  272 (606)
T ss_dssp             EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred             ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence            766644311                                                     477888999999888888


Q ss_pred             cCCCCCCCCEEecccccCcccCCCCCC--cCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCc-cccCCC
Q 003296          191 DLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQ-QLGSCR  267 (833)
Q Consensus       191 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~l~  267 (833)
                      .|..+++|++|++++|.++ .+|..+.  ++|++|++++|.+.+ +++..|..+++|++|++++|.+.+.+|. .+..++
T Consensus       273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  350 (606)
T 3t6q_A          273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE  350 (606)
T ss_dssp             TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSB-GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred             HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCc-CchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence            8999999999999999998 5676665  789999999998765 5567888999999999999999865554 589999


Q ss_pred             CCcEEEccCCccCCCC--hhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCcc-ccccCCCCCEE
Q 003296          268 SLTLLNLAQNELNGSL--PIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPS-FLSNLTNLVNL  344 (833)
Q Consensus       268 ~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L  344 (833)
                      +|++|++++|.+.+..  +..+..+++|+.|++++|.+.+..|..|..+++|++|++++|.+.+..+. .|..+++|+.|
T Consensus       351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  430 (606)
T 3t6q_A          351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL  430 (606)
T ss_dssp             TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred             cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence            9999999999998765  77889999999999999999999899999999999999999999887665 48899999999


Q ss_pred             EccCCccccccCccccCCCCCCEEEccCCcCCcc-CC--CCcccc--cceeeccccccccchhhhhccCCCCCEEecccC
Q 003296          345 NLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGT-IP--MMPPRL--QIALNLSSNLFEGPIPTTFARLNGLEVLDLSNN  419 (833)
Q Consensus       345 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p--~~~~~~--~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  419 (833)
                      ++++|.+++..|..|..+++|++|++++|++++. ++  .....+  .+.|++++|.+++..|..|..+++|+.|++++|
T Consensus       431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  510 (606)
T 3t6q_A          431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN  510 (606)
T ss_dssp             ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence            9999999998899999999999999999999863 22  222222  267999999999999999999999999999999


Q ss_pred             cCccccchhccCCCCCCeeeCcCCcccccCCCC----CcccccccCCCcccc
Q 003296          420 RFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKF----SKWVSVDTTGNLKLI  467 (833)
Q Consensus       420 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~~~~~~~~~n~~l~  467 (833)
                      ++++..|..+..+++| .|++++|++++..|..    .....++..+|+-.|
T Consensus       511 ~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  561 (606)
T 3t6q_A          511 RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC  561 (606)
T ss_dssp             CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred             ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence            9999999999999999 9999999999877652    122334444665544

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=3e-54  Score=470.28  Aligned_cols=250  Identities=14%  Similarity=0.229  Sum_probs=209.8

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ..|+..+.||+|+||.||+|+. .+|+.||||++...    .....+.+.+|+++|++++|||||+++++|.+++.+|||
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~----~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iV  226 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLR----KQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVV  226 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEST----TCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEecc----chhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEE
Confidence            4588889999999999999997 57999999999532    233456799999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||||+||+|.++++.   ..+++.++..|+.||+.||+|||   +.+||||||||+|||++.++.+||+|||+|+.....
T Consensus       227 mEy~~gG~L~~~i~~---~~l~e~~~~~~~~qil~aL~ylH---~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~  300 (423)
T 4fie_A          227 MEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE  300 (423)
T ss_dssp             EECCTTEEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSS
T ss_pred             EeCCCCCcHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEecCccceECCCC
Confidence            999999999999975   35899999999999999999999   789999999999999999999999999999987543


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      ..  ...+.+||+.|||||++.+..|+.++||||+||++|||++|+.||.+.......... ... .      .+.... 
T Consensus       301 ~~--~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i-~~~-~------~~~~~~-  369 (423)
T 4fie_A          301 VP--RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMI-RDN-L------PPRLKN-  369 (423)
T ss_dssp             CC--CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHH-HHS-C------CCCCSC-
T ss_pred             Cc--cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHH-HcC-C------CCCCcc-
Confidence            32  335689999999999999999999999999999999999999999865543322211 111 0      001110 


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                         ....+.++.+++.+||+.||++|||++|+++|
T Consensus       370 ---~~~~s~~~~dli~~~L~~dP~~R~ta~ell~H  401 (423)
T 4fie_A          370 ---LHKVSPSLKGFLDRLLVRDPAQRATAAELLKH  401 (423)
T ss_dssp             ---TTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             ---cccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence               11234578899999999999999999999875

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=1.2e-54  Score=466.89  Aligned_cols=259  Identities=19%  Similarity=0.243  Sum_probs=209.4

Q ss_pred             HhcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCC-CCcccceEEEecC
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSN-SNVMTPLAYVLAS  627 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H-~niv~~~~~~~~~  627 (833)
                      ++|+..+.||+|+||+||+|...      .++.||||+++....   ....++|.+|+++|++++| ||||+++|+|..+
T Consensus        64 ~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~---~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~  140 (353)
T 4ase_A           64 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT---HSEHRALMSELKILIHIGHHLNVVNLLGACTKP  140 (353)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCC---HHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCT
T ss_pred             HHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccC---hHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEec
Confidence            56778899999999999999853      346899999953221   1235689999999999975 8999999999765


Q ss_pred             -CceEEEEeeCCCCChhhhhhcCC--------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCcccee
Q 003296          628 -DSAYLFYEYAPKGTLFDVLHGCL--------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIF  692 (833)
Q Consensus       628 -~~~~lv~ey~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nil  692 (833)
                       +.+|+|||||++|+|.++|+...              ...++|.++..|+.|||+||+|||   +.+||||||||+|||
T Consensus       141 ~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH---~~~iiHRDLK~~NIL  217 (353)
T 4ase_A          141 GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNIL  217 (353)
T ss_dssp             TSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEE
T ss_pred             CCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHh---hCCeecCccCcccee
Confidence             56899999999999999997532              235899999999999999999999   789999999999999


Q ss_pred             eCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHH
Q 003296          693 LKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKW  771 (833)
Q Consensus       693 l~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~  771 (833)
                      +++++.+||+|||+|+..............+||+.|||||++.+..|+.++|||||||++|||+| |+.||.+.......
T Consensus       218 l~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~~  297 (353)
T 4ase_A          218 LSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEF  297 (353)
T ss_dssp             ECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHH
T ss_pred             eCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHHHH
Confidence            99999999999999997754443333456789999999999999999999999999999999998 99999764432222


Q ss_pred             HHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          772 VLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      . .....+...      ..+      ...+.++.+++.+||+.||++||||+||+++|+++
T Consensus       298 ~-~~i~~g~~~------~~p------~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~l  345 (353)
T 4ase_A          298 C-RRLKEGTRM------RAP------DYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL  345 (353)
T ss_dssp             H-HHHHHTCCC------CCC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             H-HHHHcCCCC------CCC------ccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHH
Confidence            2 212111111      111      12245688999999999999999999999999864

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=1.4e-53  Score=452.41  Aligned_cols=262  Identities=18%  Similarity=0.208  Sum_probs=198.5

Q ss_pred             hcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC----ceE
Q 003296          556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD----SAY  631 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~----~~~  631 (833)
                      ++...+.||+|+||+||+|++ +|+.||||+++....     ....+.+|+..+.+++|||||+++|+|.+++    .+|
T Consensus         4 ~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~-----~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~   77 (303)
T 3hmm_A            4 TIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE-----RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW   77 (303)
T ss_dssp             GEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGH-----HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEE
T ss_pred             EEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccch-----hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEE
Confidence            455678999999999999998 689999999942211     1123445666678899999999999998754    579


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcC-----CCCCeeecCCCccceeeCCCCCceecccee
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGF-----TSNPILLLDLSTRNIFLKSLKEPQIGDIEL  706 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~-----~~~~iiHrdlk~~Nill~~~~~~ki~dfgl  706 (833)
                      ||||||++|+|.++++.   ..++|..+.+++.|+|+||+|||+.     ..++||||||||+|||+|+++.+||+|||+
T Consensus        78 lV~Ey~~~gsL~~~l~~---~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGl  154 (303)
T 3hmm_A           78 LVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL  154 (303)
T ss_dssp             EEEECCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTT
T ss_pred             EEecCCCCCcHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCC
Confidence            99999999999999985   3599999999999999999999954     234899999999999999999999999999


Q ss_pred             eeeeCCCCCCC--ccccccccccccccccccCC------cccccCcchhhHHHHHHHHhCCCcccCCcc-----------
Q 003296          707 CKVIDPSKSTG--SLSTVAGSVGYIPPEYAYTM------RVTMAGNVYSFGVILLELLTGKTAVNQGNE-----------  767 (833)
Q Consensus       707 ~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~-----------  767 (833)
                      |+.........  .....+||+.|||||++.+.      .|+.|+|||||||++|||+||++||.....           
T Consensus       155 a~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~  234 (303)
T 3hmm_A          155 AVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPS  234 (303)
T ss_dssp             CEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCS
T ss_pred             CccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccc
Confidence            99875443221  22346899999999998654      578999999999999999999887752211           


Q ss_pred             --HHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          768 --LAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       768 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                        ..........     ....++.++... ...+.+..+.+++.+||+.||++||||.||+++|+++
T Consensus       235 ~~~~~~~~~~~~-----~~~~rp~~p~~~-~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l  295 (303)
T 3hmm_A          235 DPSVEEMRKVVC-----EQKLRPNIPNRW-QSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQL  295 (303)
T ss_dssp             SCCHHHHHHHHT-----TSCCCCCCCGGG-GSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHh-----cccCCCCCCccc-cchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHH
Confidence              0111111111     111122222111 1124556788999999999999999999999999876

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.4e-51  Score=484.58  Aligned_cols=446  Identities=23%  Similarity=0.263  Sum_probs=404.5

Q ss_pred             CCCCCCCCCEEECCCCCCCCc-c-cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCC
Q 003296            3 SCGGIDGLKLLNFSKNELVSL-P-TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKAL   80 (833)
Q Consensus         3 ~~~~l~~L~~L~ls~N~l~~i-~-~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L   80 (833)
                      +++++++|++|++++|.++++ | +|.++++|++|+|++|+++++.+..|+++++|++|+|++|+|+++.|..|+.+++|
T Consensus        52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L  131 (606)
T 3t6q_A           52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL  131 (606)
T ss_dssp             TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred             HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcc
Confidence            578999999999999999987 4 59999999999999999999999999999999999999999999888999999999


Q ss_pred             CEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCc--EEECcCCcCCCCCCcccccC---------
Q 003296           81 EELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLE--VLILSANNLDGRLPTSLASI---------  149 (833)
Q Consensus        81 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~--~L~Ls~N~l~~~~p~~~~~l---------  149 (833)
                      ++|+|++|.+++..+..+..+++|++|+|++|.+++..|..|+.+++|+  .|++++|.+++..|..|...         
T Consensus       132 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  211 (606)
T 3t6q_A          132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG  211 (606)
T ss_dssp             CEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTT
T ss_pred             cEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCC
Confidence            9999999999986656666699999999999999999899999999999  99999999998887766432         


Q ss_pred             ------------------------------------------CccCccccccccccccCChhh--hhcCCEEeccccccc
Q 003296          150 ------------------------------------------TTLSRFAANQNKFSGSVPGGI--TRFLRNLDLSYNKLL  185 (833)
Q Consensus       150 ------------------------------------------~~L~~l~l~~n~l~~~~p~~~--~~~L~~L~Ls~N~l~  185 (833)
                                                                .+|+.+++++|.+++..+..+  .+.|++|++++|++.
T Consensus       212 ~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  291 (606)
T 3t6q_A          212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS  291 (606)
T ss_dssp             CSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS
T ss_pred             chhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC
Confidence                                                      157778888888887666545  567999999999998


Q ss_pred             ccCCccCCCCCCCCEEecccccCcccCCCCCC--cCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCC--Cc
Q 003296          186 GVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMI--PQ  261 (833)
Q Consensus       186 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~--~~  261 (833)
                       .+|..+..+++|++|++++|.+++..|..+.  ++|+.|++++|.+.+.++...|..+++|++|++++|.+++..  +.
T Consensus       292 -~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  370 (606)
T 3t6q_A          292 -ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL  370 (606)
T ss_dssp             -CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT
T ss_pred             -CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch
Confidence             5688899999999999999999987776664  799999999999888888888999999999999999999876  77


Q ss_pred             cccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCch-hhcCCCcCceeeccCCcCcccCccccccCCC
Q 003296          262 QLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPS-QFSQLKLLSTMNISWNSLSGSIPSFLSNLTN  340 (833)
Q Consensus       262 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  340 (833)
                      .+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|. .|..+++|++|++++|.+.+..|..|..+++
T Consensus       371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  450 (606)
T 3t6q_A          371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA  450 (606)
T ss_dssp             TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred             hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence            899999999999999999988899999999999999999999987665 4899999999999999999999999999999


Q ss_pred             CCEEEccCCccccc---cCccccCCCCCCEEEccCCcCCccCCCCccccc--ceeeccccccccchhhhhccCCCCCEEe
Q 003296          341 LVNLNLRQNNLNGS---IPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQ--IALNLSSNLFEGPIPTTFARLNGLEVLD  415 (833)
Q Consensus       341 L~~L~L~~N~l~~~---~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~--~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  415 (833)
                      |+.|+|++|++++.   .+..+..+++|++|++++|.+++..|.....+.  +.|++++|.+++..|..|..++.| .|+
T Consensus       451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~  529 (606)
T 3t6q_A          451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN  529 (606)
T ss_dssp             CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred             CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEE
Confidence            99999999999873   346799999999999999999988876665444  689999999999999999999999 999


Q ss_pred             cccCcCccccchhccCCCCCCeeeCcCCcccccCC
Q 003296          416 LSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVP  450 (833)
Q Consensus       416 Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  450 (833)
                      +++|++++.+|..+..+++|+.+++++|++.+..+
T Consensus       530 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          530 LASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            99999999999999999999999999999998655

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=4e-54  Score=451.40  Aligned_cols=250  Identities=18%  Similarity=0.205  Sum_probs=198.7

Q ss_pred             HhcCCccccccCcccEEEEEEc----CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          555 AVANPLNVELKTRFSTYYKAVM----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      ++|+..+.||+|+||+||+|+.    .+++.||||+++....  .......+.+|+++|++++|||||++++++.+++..
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~--~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  101 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATL--KVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKL  101 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEE--EEEECC------CCCCCCCCTTEECEEEEEEETTEE
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHc--ChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEE
Confidence            4688899999999999999985    2578999999953221  122345789999999999999999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      |+|||||+||||.+++++  ...+++.++..++.|++.||+|||   +.+||||||||+|||+++++.+||+|||+|+..
T Consensus       102 ~ivmEy~~gg~L~~~l~~--~~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~  176 (304)
T 3ubd_A          102 YLILDFLRGGDLFTRLSK--EVMFTEEDVKFYLAELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSKES  176 (304)
T ss_dssp             EEEECCCTTCEEHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTSCEEEESSEEEEC-
T ss_pred             EEEEEcCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHeEEcCCCCEEecccccceec
Confidence            999999999999999986  356999999999999999999999   789999999999999999999999999999875


Q ss_pred             CCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296          711 DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                      .....  ...+.+||+.|||||++.+..|+.++||||+||++|||+||+.||.+.+... ...........        .
T Consensus       177 ~~~~~--~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~-~~~~i~~~~~~--------~  245 (304)
T 3ubd_A          177 IDHEK--KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKE-TMTMILKAKLG--------M  245 (304)
T ss_dssp             ----C--CCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCCCC--------C
T ss_pred             cCCCc--cccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHH-HHHHHHcCCCC--------C
Confidence            43322  2356799999999999999999999999999999999999999998654332 22221111110        1


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCCC-----HHHHHHH
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPK-----MKSVLRM  828 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps-----~~evl~~  828 (833)
                      +      ...+.++.+++.+||+.||++|||     ++|+++|
T Consensus       246 p------~~~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~H  282 (304)
T 3ubd_A          246 P------QFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRH  282 (304)
T ss_dssp             C------TTSCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHTS
T ss_pred             C------CcCCHHHHHHHHHHcccCHHHCCCCCcCCHHHHHcC
Confidence            1      123456889999999999999998     4677754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.9e-50  Score=478.62  Aligned_cols=463  Identities=25%  Similarity=0.290  Sum_probs=298.3

Q ss_pred             CCCCEEECCCCCCCCcc--cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296            8 DGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL   85 (833)
Q Consensus         8 ~~L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   85 (833)
                      ++++.|++++|.+++++  .|..+++|++|||++|+++++.+..|+++++|++|+|++|+|+++++..|.++++|++|+|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            46777777777777764  3777777777777777777777777777777777777777777666667777777777777


Q ss_pred             cCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccc--cCCccCcccccccccc
Q 003296           86 SGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLA--SITTLSRFAANQNKFS  163 (833)
Q Consensus        86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~l~l~~n~l~  163 (833)
                      ++|.++++.|..|+++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..+.  .+++|+.|++++|.++
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence            77777776667777777777777777777777777777777777777777777766555443  3355666666555554


Q ss_pred             ccCC---------------------------------------------------hhhh----hcCCEEecccccccccC
Q 003296          164 GSVP---------------------------------------------------GGIT----RFLRNLDLSYNKLLGVI  188 (833)
Q Consensus       164 ~~~p---------------------------------------------------~~~~----~~L~~L~Ls~N~l~~~~  188 (833)
                      +..|                                                   ..+.    ..|+.|+|++|++.+..
T Consensus       185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~  264 (680)
T 1ziw_A          185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG  264 (680)
T ss_dssp             CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred             ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence            4333                                                   2221    12777888888877777


Q ss_pred             CccCCCCCCCCEEecccccCcccCCCCCC--cCCcEEEcCCccccC--------CCCccccCCCCCCCEEECCCCCCCCC
Q 003296          189 PIDLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIG--------EIPSATFTSLEKLTYLELDNNSFTGM  258 (833)
Q Consensus       189 ~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~l~~n~l~~--------~~~~~~f~~l~~L~~L~L~~N~l~~~  258 (833)
                      |..|..+++|++|+|++|.+++..|..+.  ++|+.|++++|...+        .+....|..+++|++|++++|.+++.
T Consensus       265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~  344 (680)
T 1ziw_A          265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI  344 (680)
T ss_dssp             TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred             cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence            77777788888888888877766554432  344444444332111        00111333444444444444444444


Q ss_pred             CCccccCCCCCcEEEcc----------------------------CCccCCCChhhhCCCCCCcEEEccCCcCCC-----
Q 003296          259 IPQQLGSCRSLTLLNLA----------------------------QNELNGSLPIQLGSLGILQVMNLQLNKLSG-----  305 (833)
Q Consensus       259 ~~~~~~~l~~L~~L~L~----------------------------~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-----  305 (833)
                      .+..|.++++|++|+++                            +|++.+..|..|..+++|+.|++++|.+.+     
T Consensus       345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  424 (680)
T 1ziw_A          345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ  424 (680)
T ss_dssp             CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG
T ss_pred             ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc
Confidence            44444443333333332                            233333334445555555555555555544     


Q ss_pred             --------------------cCchhhcCCCcCceeeccCCcCc--ccCccccccCCCCCEEEccCCccccccCccccCCC
Q 003296          306 --------------------EIPSQFSQLKLLSTMNISWNSLS--GSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMR  363 (833)
Q Consensus       306 --------------------~~p~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  363 (833)
                                          ..+..|..+++|+.|++++|.+.  +..|..|.++++|+.|+|++|++++..+..|.+++
T Consensus       425 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~  504 (680)
T 1ziw_A          425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE  504 (680)
T ss_dssp             GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccc
Confidence                                44444444444444555444443  34566777778888888888888877777788888


Q ss_pred             CCCEEEccCCcCCccCCCC--------ccc--ccceeeccccccccchhhhhccCCCCCEEecccCcCccccchhccCCC
Q 003296          364 SLIELQLGGNQLSGTIPMM--------PPR--LQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMP  433 (833)
Q Consensus       364 ~L~~L~L~~N~l~~~~p~~--------~~~--~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  433 (833)
                      +|++|+|++|++++..+..        ...  ..+.|++++|.++...+..|.++++|+.|++++|++++..+..|..++
T Consensus       505 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~  584 (680)
T 1ziw_A          505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV  584 (680)
T ss_dssp             TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCC
Confidence            8888888888877532211        111  225688888888865556788888888888888888887777888888


Q ss_pred             CCCeeeCcCCcccccCCC-----CCcccccccCCCccccccc
Q 003296          434 TLTQLLLTNNQLSGVVPK-----FSKWVSVDTTGNLKLINVT  470 (833)
Q Consensus       434 ~L~~L~ls~N~l~~~~p~-----~~~~~~~~~~~n~~l~~~~  470 (833)
                      +|+.|++++|++++..|.     ......++..+|+-.|+..
T Consensus       585 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             TCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            888888888888887653     2233445556787777644

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=1.2e-52  Score=442.75  Aligned_cols=253  Identities=19%  Similarity=0.283  Sum_probs=192.7

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC----
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD----  628 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~----  628 (833)
                      .++|+..+.||+|+||+||+|+. .+|+.||||+++....   ....+.|.+|+++|++++|||||+++++|.+.+    
T Consensus         4 l~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~---~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~   80 (299)
T 4g31_A            4 LTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNR---ELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEK   80 (299)
T ss_dssp             HHHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSS---HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC----
T ss_pred             chhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCC---HHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccc
Confidence            45799999999999999999996 4899999999953221   223467999999999999999999999997654    


Q ss_pred             --------ceEEEEeeCCCCChhhhhhcCCC-CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCc
Q 003296          629 --------SAYLFYEYAPKGTLFDVLHGCLE-NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEP  699 (833)
Q Consensus       629 --------~~~lv~ey~~~g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~  699 (833)
                              ..|+|||||++|+|.++++.... ...++..++.|+.|+++||+|||   +.+||||||||+|||++.++.+
T Consensus        81 ~~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH---~~~IiHRDlKp~NILl~~~~~v  157 (299)
T 4g31_A           81 LQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVV  157 (299)
T ss_dssp             ------CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCE
T ss_pred             ccccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH---HCcCccccCcHHHeEECCCCcE
Confidence                    36999999999999999986432 24677888999999999999999   7899999999999999999999


Q ss_pred             eeccceeeeeeCCCCCC----------CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHH
Q 003296          700 QIGDIELCKVIDPSKST----------GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELA  769 (833)
Q Consensus       700 ki~dfgl~~~~~~~~~~----------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~  769 (833)
                      ||+|||+|+........          ...++.+||+.|||||++.+..|+.++|||||||++|||++   ||....+..
T Consensus       158 Kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~~~~  234 (299)
T 4g31_A          158 KVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQMERV  234 (299)
T ss_dssp             EECCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHHHHH
T ss_pred             EEccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCccHHH
Confidence            99999999877543221          12245689999999999999999999999999999999996   775432221


Q ss_pred             HHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          770 KWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ....... .         ..   .++......+...+++.+||+.||++|||+.|+++|
T Consensus       235 ~~~~~~~-~---------~~---~p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h  280 (299)
T 4g31_A          235 RTLTDVR-N---------LK---FPPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIEN  280 (299)
T ss_dssp             HHHHHHH-T---------TC---CCHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             HHHHHHh-c---------CC---CCCCCcccCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            1111110 0         01   112233445567789999999999999999999874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=6.5e-50  Score=486.14  Aligned_cols=452  Identities=23%  Similarity=0.212  Sum_probs=263.0

Q ss_pred             CCCCEEECCCCCCCCcc--cccCCCCCCEEECCCCCC-CCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEE
Q 003296            8 DGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNL-NGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELV   84 (833)
Q Consensus         8 ~~L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~l-~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~   84 (833)
                      ++|+.|+|++|.|++++  .|.++++|++|||++|.+ ..+.+.+|.++++|++|+|++|+|+++.|..|.++++|++|+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            45666666666666542  356666666666666633 233355566666666666666666665566666666666666


Q ss_pred             ccCCcCcccCCcc--ccCCCCCCEEeccCCcCCccCC-ccccCCCCCcEEECcCCcCCCCCCcccccC--CccCcccccc
Q 003296           85 LSGNAFHGEIPKG--IADYRNLTLIDLSANNLSGSVP-DRIGELSKLEVLILSANNLDGRLPTSLASI--TTLSRFAANQ  159 (833)
Q Consensus        85 L~~N~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~l~l~~  159 (833)
                      |++|.+++..|..  |.++++|++|+|++|.+++..+ ..|+++++|++|+|++|.+++..+..+..+  ++|+.|+++.
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~  183 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA  183 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence            6666665544433  5666666666666666655433 356666666666666666666666666555  5566666666


Q ss_pred             ccccccCChhhh--------hcCCEEecccccccccCCccCCC-------------------------------------
Q 003296          160 NKFSGSVPGGIT--------RFLRNLDLSYNKLLGVIPIDLLS-------------------------------------  194 (833)
Q Consensus       160 n~l~~~~p~~~~--------~~L~~L~Ls~N~l~~~~~~~~~~-------------------------------------  194 (833)
                      |.+.+..|..+.        ..|+.|+|++|++.+..+..+..                                     
T Consensus       184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l  263 (844)
T 3j0a_A          184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL  263 (844)
T ss_dssp             SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred             CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence            666554443321        12566666666554433322211                                     


Q ss_pred             -CCCCCEEecccccCcccCCCCCC--cCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcE
Q 003296          195 -HPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTL  271 (833)
Q Consensus       195 -~~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  271 (833)
                       .++|+.|+|++|.+.+..|..+.  ++|+.|++++|.+.+ +++..|..+++|++|+|++|++++..|..|.++++|+.
T Consensus       264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  342 (844)
T 3j0a_A          264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY  342 (844)
T ss_dssp             TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE-ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred             ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC-CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence             13455555555555544444333  455555555555433 33344555555555555555555555555555555555


Q ss_pred             EEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccC--------------------
Q 003296          272 LNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSI--------------------  331 (833)
Q Consensus       272 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--------------------  331 (833)
                      |+|++|.+.+..+..|..+++|+.|+|++|.+++..     .+++|+.|++++|+++...                    
T Consensus       343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~  417 (844)
T 3j0a_A          343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLD  417 (844)
T ss_dssp             EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSST
T ss_pred             EECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcccccccccccceeecccCccccCc
Confidence            555555555444444555555555555555554321     1233333333333333110                    


Q ss_pred             -ccccccCCCCCEEEccCCccccccCc-cccCCCCCCEEEccCCcCCccC-----CCCcccc--cceeeccccccccchh
Q 003296          332 -PSFLSNLTNLVNLNLRQNNLNGSIPN-SITNMRSLIELQLGGNQLSGTI-----PMMPPRL--QIALNLSSNLFEGPIP  402 (833)
Q Consensus       332 -~~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~-----p~~~~~~--~~~L~Ls~N~l~~~~p  402 (833)
                       +..+..+++|+.|+|++|++++..+. .+..+++|+.|+|++|.+++..     +.....+  ...|+|++|.+++..|
T Consensus       418 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  497 (844)
T 3j0a_A          418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP  497 (844)
T ss_dssp             THHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCT
T ss_pred             hhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccCh
Confidence             11133667777788888877755433 3556778888888888776332     2222222  2579999999999999


Q ss_pred             hhhccCCCCCEEecccCcCccccchhccCCCCCCeeeCcCCcccccCCCCC-cccccccCCCcccc
Q 003296          403 TTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFS-KWVSVDTTGNLKLI  467 (833)
Q Consensus       403 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~-~~~~~~~~~n~~l~  467 (833)
                      ..|.++++|+.|+|++|+|++..|..+.  ++|+.|++++|++++..|... ....++..+|+-.|
T Consensus       498 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C  561 (844)
T 3j0a_A          498 GVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFIC  561 (844)
T ss_dssp             TSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCC
T ss_pred             hHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcCEEEecCCCccc
Confidence            9999999999999999999988877776  889999999999999887642 22223333555555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=7.6e-50  Score=469.71  Aligned_cols=433  Identities=20%  Similarity=0.193  Sum_probs=317.1

Q ss_pred             CCCCEEECCCCCCCCcc--cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296            8 DGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL   85 (833)
Q Consensus         8 ~~L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   85 (833)
                      ++++.|++++|.+++++  .|.++++|++|||++|+|+++.+.+|.++++|++|+|++|+|+++.|..|+++++|++|+|
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            56778888888887764  4777888888888888888777777888888888888888888777778888888888888


Q ss_pred             cCCcCcccCCccccCCCCCCEEeccCCcCCc-cCCccccCCCCCcEEECcCCcCCCCCCcccccCCccC----ccccccc
Q 003296           86 SGNAFHGEIPKGIADYRNLTLIDLSANNLSG-SVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLS----RFAANQN  160 (833)
Q Consensus        86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~l~l~~n  160 (833)
                      ++|.+++..+..|+++++|++|+|++|.+++ .+|..|+++++|++|+|++|.+++..|..|+.+.+|+    .+++++|
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n  191 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN  191 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred             cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence            8888877777778888888888888888775 4577788888888888888888877777777766655    5777777


Q ss_pred             cccccCChhh-hhcCCEEeccccccc------------------------------------------------------
Q 003296          161 KFSGSVPGGI-TRFLRNLDLSYNKLL------------------------------------------------------  185 (833)
Q Consensus       161 ~l~~~~p~~~-~~~L~~L~Ls~N~l~------------------------------------------------------  185 (833)
                      .+++..+..+ ...|+.|++++|.+.                                                      
T Consensus       192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~  271 (606)
T 3vq2_A          192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT  271 (606)
T ss_dssp             CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred             CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence            7765444333 224666776666543                                                      


Q ss_pred             ----ccCCccCCCCCCCCEEecccccCcccCCCCCC--cCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCC
Q 003296          186 ----GVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMI  259 (833)
Q Consensus       186 ----~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~  259 (833)
                          +..|. +..+++|+.|++++|.+.. +| .+.  ++|+.|++++|.+ +.+|  .+ .+++|+.|++++|+..+..
T Consensus       272 ~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp--~~-~l~~L~~L~l~~n~~~~~~  344 (606)
T 3vq2_A          272 NDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP--TL-DLPFLKSLTLTMNKGSISF  344 (606)
T ss_dssp             TTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC--CC-CCSSCCEEEEESCSSCEEC
T ss_pred             ccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc--cC-CCCccceeeccCCcCccch
Confidence                12222 4455677777777777653 33 332  5788888888887 5566  34 7788888888888554433


Q ss_pred             CccccCCCCCcEEEccCCccCCC--ChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCc-cccc
Q 003296          260 PQQLGSCRSLTLLNLAQNELNGS--LPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIP-SFLS  336 (833)
Q Consensus       260 ~~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~  336 (833)
                        .+..+++|++|++++|.+++.  .|..+..+++|+.|++++|.+++ +|..|..+++|++|++++|.+.+..| ..|.
T Consensus       345 --~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  421 (606)
T 3vq2_A          345 --KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFL  421 (606)
T ss_dssp             --CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred             --hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhh
Confidence              566778888888888887755  36777778888888888888775 44667778888888888888877766 5777


Q ss_pred             cCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCcc-CCCCccccc--ceeeccccccccchhhhhccCCCCCE
Q 003296          337 NLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGT-IPMMPPRLQ--IALNLSSNLFEGPIPTTFARLNGLEV  413 (833)
Q Consensus       337 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~~~--~~L~Ls~N~l~~~~p~~~~~l~~L~~  413 (833)
                      .+++|+.|++++|.+++..|..|..+++|++|++++|.+++. +|.....+.  +.|++++|.+++..|..|.++++|+.
T Consensus       422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  501 (606)
T 3vq2_A          422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL  501 (606)
T ss_dssp             TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCE
Confidence            788888888888888777777788888888888888887763 454443333  56788888888777777888888888


Q ss_pred             EecccCcCccccchhccCCCCCCeeeCcCCcccccCC
Q 003296          414 LDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVP  450 (833)
Q Consensus       414 L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  450 (833)
                      |++++|++++.+|..|..+++|+.|++++|+++...+
T Consensus       502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~  538 (606)
T 3vq2_A          502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG  538 (606)
T ss_dssp             EECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEES
T ss_pred             EECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCH
Confidence            8888888887778888888888888888888775433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=8.6e-49  Score=467.04  Aligned_cols=447  Identities=21%  Similarity=0.211  Sum_probs=305.1

Q ss_pred             CCCCCCCCEEECCCCCCCCc-c-cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCC
Q 003296            4 CGGIDGLKLLNFSKNELVSL-P-TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALE   81 (833)
Q Consensus         4 ~~~l~~L~~L~ls~N~l~~i-~-~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~   81 (833)
                      ++++++|++|++++|.++++ | .|..+++|++|+|++|+++.+.+.+|+++++|++|+|++|+++++.|..|+++++|+
T Consensus        45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  124 (680)
T 1ziw_A           45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI  124 (680)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred             HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence            34555666666666666654 2 255566666666666666655555566666666666666666655555566666666


Q ss_pred             EEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCcccc--CCCCCcEEECcCCcCCCCC-----------------
Q 003296           82 ELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIG--ELSKLEVLILSANNLDGRL-----------------  142 (833)
Q Consensus        82 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~-----------------  142 (833)
                      +|+|++|.+++..|..|.++++|++|+|++|.+++..+..|.  .+++|++|+|++|.+++..                 
T Consensus       125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  204 (680)
T 1ziw_A          125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN  204 (680)
T ss_dssp             EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTT
T ss_pred             EEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccc
Confidence            666666666655555555555555555555555544443332  2233444444444333333                 


Q ss_pred             ----------------------------------CcccccCCc--cCccccccccccccCChhh--hhcCCEEecccccc
Q 003296          143 ----------------------------------PTSLASITT--LSRFAANQNKFSGSVPGGI--TRFLRNLDLSYNKL  184 (833)
Q Consensus       143 ----------------------------------p~~~~~l~~--L~~l~l~~n~l~~~~p~~~--~~~L~~L~Ls~N~l  184 (833)
                                                        |..|..++.  |+.|++++|.+++..|..+  .+.|++|+|++|++
T Consensus       205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  284 (680)
T 1ziw_A          205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI  284 (680)
T ss_dssp             CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred             cccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCcc
Confidence                                              233333322  5566666666655544433  34466666666665


Q ss_pred             cccCCccC---------------------------------CCCCCCCEEecccccCcccCCCCCC--c-----------
Q 003296          185 LGVIPIDL---------------------------------LSHPNLQTIDLSVNMLEGSLPQNMS--P-----------  218 (833)
Q Consensus       185 ~~~~~~~~---------------------------------~~~~~L~~L~Ls~N~l~~~~p~~~~--~-----------  218 (833)
                      .+..|..|                                 ..+++|++|++++|.+++..|..+.  +           
T Consensus       285 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  364 (680)
T 1ziw_A          285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF  364 (680)
T ss_dssp             SEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred             CccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence            55444333                                 3334445555555555544333322  2           


Q ss_pred             -----------------CCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCC-ccccCCCCCcEEEccCCccC
Q 003296          219 -----------------NLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIP-QQLGSCRSLTLLNLAQNELN  280 (833)
Q Consensus       219 -----------------~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~  280 (833)
                                       +|+.|++++|.+.+ +++..|..+++|++|+|++|++++.+| ..|.++++|++|++++|++.
T Consensus       365 ~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  443 (680)
T 1ziw_A          365 TSLRTLTNETFVSLAHSPLHILNLTKNKISK-IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL  443 (680)
T ss_dssp             SCCCEECTTTTGGGTTSCCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE
T ss_pred             hhhhhcchhhhcccccCcCceEECCCCCCCe-EChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc
Confidence                             34445555555443 444567778888888888888876544 67788888888888888887


Q ss_pred             CCChhhhCCCCCCcEEEccCCcCC--CcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccC--
Q 003296          281 GSLPIQLGSLGILQVMNLQLNKLS--GEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIP--  356 (833)
Q Consensus       281 ~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p--  356 (833)
                      +..+..|..++.|+.|++++|.+.  +..|..|..+++|++|++++|++++..+..|.++++|++|+|++|++++..+  
T Consensus       444 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  523 (680)
T 1ziw_A          444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA  523 (680)
T ss_dssp             ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTT
T ss_pred             eeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhh
Confidence            777788888889999999998887  5688999999999999999999999888899999999999999999987533  


Q ss_pred             ------ccccCCCCCCEEEccCCcCCccCCCCcccc--cceeeccccccccchhhhhccCCCCCEEecccCcCccccchh
Q 003296          357 ------NSITNMRSLIELQLGGNQLSGTIPMMPPRL--QIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQL  428 (833)
Q Consensus       357 ------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~--~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  428 (833)
                            ..|.++++|+.|+|++|+++...+.....+  .+.|++++|.+++..+..|..+++|+.|++++|+|++..|..
T Consensus       524 ~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~  603 (680)
T 1ziw_A          524 NPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV  603 (680)
T ss_dssp             STTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHH
T ss_pred             ccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhH
Confidence                  247899999999999999985444334433  368999999999888888999999999999999999999988


Q ss_pred             cc-CCCCCCeeeCcCCcccccCCC
Q 003296          429 LA-QMPTLTQLLLTNNQLSGVVPK  451 (833)
Q Consensus       429 ~~-~l~~L~~L~ls~N~l~~~~p~  451 (833)
                      +. .+++|+.+++++|++.+..+.
T Consensus       604 ~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          604 FGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             HHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             hcccccccCEEEccCCCcccCCcc
Confidence            87 789999999999999987653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1e-48  Score=460.04  Aligned_cols=436  Identities=18%  Similarity=0.193  Sum_probs=384.0

Q ss_pred             CCCCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEE
Q 003296            4 CGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEEL   83 (833)
Q Consensus         4 ~~~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L   83 (833)
                      |......+.++++++.++.+|. .-.++|++|+|++|+++++.+..|.++++|++|+|++|+|+++.|..|.++++|++|
T Consensus         7 c~~~~~~~~~~c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L   85 (606)
T 3vq2_A            7 CIEVVPNITYQCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNL   85 (606)
T ss_dssp             CEEEETTTEEECTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             ceecCCCCceEccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEe
Confidence            3333456789999999999986 234899999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCC-CCCcccccCCccCccccccccc
Q 003296           84 VLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDG-RLPTSLASITTLSRFAANQNKF  162 (833)
Q Consensus        84 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~l~l~~n~l  162 (833)
                      +|++|.+++..|.+|+++++|++|+|++|.+++..+..|+++++|++|+|++|.+++ .+|..|+++++|+.|++++|++
T Consensus        86 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l  165 (606)
T 3vq2_A           86 ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI  165 (606)
T ss_dssp             ECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred             ECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence            999999999999999999999999999999998888999999999999999999987 5699999999999999999999


Q ss_pred             cccCChhh--hhcC----CEEecccccccccCCccCCCCCCCCEEecccccCcc--------------------------
Q 003296          163 SGSVPGGI--TRFL----RNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEG--------------------------  210 (833)
Q Consensus       163 ~~~~p~~~--~~~L----~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~--------------------------  210 (833)
                      ++..|..+  ...|    ..|++++|++.+..+..+... +|+.|++++|.+.+                          
T Consensus       166 ~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~  244 (606)
T 3vq2_A          166 QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE  244 (606)
T ss_dssp             CEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred             eecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccC
Confidence            98877655  3334    489999999998766665544 89999999987641                          


Q ss_pred             --------------------------------cCCCCC--CcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCC
Q 003296          211 --------------------------------SLPQNM--SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFT  256 (833)
Q Consensus       211 --------------------------------~~p~~~--~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~  256 (833)
                                                      .+|. +  .++++.|++++|.+.. ++  .+..+++|+.|++++|.+ 
T Consensus       245 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~--~l~~~~~L~~L~l~~n~l-  319 (606)
T 3vq2_A          245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE--DVPKHFKWQSLSIIRCQL-  319 (606)
T ss_dssp             CCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC--CCCTTCCCSEEEEESCCC-
T ss_pred             CcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh--hccccccCCEEEcccccC-
Confidence                                            1122 2  2678999999998753 55  688899999999999999 


Q ss_pred             CCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCc--CchhhcCCCcCceeeccCCcCcccCccc
Q 003296          257 GMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGE--IPSQFSQLKLLSTMNISWNSLSGSIPSF  334 (833)
Q Consensus       257 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~~~~  334 (833)
                      +.+| .+ .+++|+.|++++|...+..  .+..+++|+.|++++|.+++.  .|..+..+++|++|++++|.+++ +|..
T Consensus       320 ~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~  394 (606)
T 3vq2_A          320 KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSAN  394 (606)
T ss_dssp             SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCC
T ss_pred             cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhh
Confidence            5667 45 9999999999999665433  678999999999999999977  48889999999999999999986 5688


Q ss_pred             cccCCCCCEEEccCCccccccC-ccccCCCCCCEEEccCCcCCccCCCCccccc--ceeecccccccc-chhhhhccCCC
Q 003296          335 LSNLTNLVNLNLRQNNLNGSIP-NSITNMRSLIELQLGGNQLSGTIPMMPPRLQ--IALNLSSNLFEG-PIPTTFARLNG  410 (833)
Q Consensus       335 ~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~--~~L~Ls~N~l~~-~~p~~~~~l~~  410 (833)
                      |..+++|+.|++++|++.+..| ..|..+++|++|++++|.+.+..|.....+.  +.|++++|.+++ .+|..|..+++
T Consensus       395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  474 (606)
T 3vq2_A          395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN  474 (606)
T ss_dssp             CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence            9999999999999999998887 7899999999999999999988876655443  689999999998 47899999999


Q ss_pred             CCEEecccCcCccccchhccCCCCCCeeeCcCCcccccCCC
Q 003296          411 LEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPK  451 (833)
Q Consensus       411 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~  451 (833)
                      |+.|++++|++++..|..|..+++|+.|++++|++++..|.
T Consensus       475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  515 (606)
T 3vq2_A          475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS  515 (606)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG
T ss_pred             CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH
Confidence            99999999999999999999999999999999999988664

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-48  Score=455.11  Aligned_cols=437  Identities=22%  Similarity=0.262  Sum_probs=310.3

Q ss_pred             CCCCEEECCCCCCCCcc--cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296            8 DGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL   85 (833)
Q Consensus         8 ~~L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   85 (833)
                      ++++.|++++|.++.++  +|.++++|++|||++|+|+++.+..|.++++|++|+|++|+++++.|..|.++++|++|+|
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            35777777777777763  4777777777777777777777777777777777777777777766777777777777777


Q ss_pred             cCCcCcccCCccccCCCCCCEEeccCCcCCcc-CCccccCCCCCcEEECcCCcCCCCCCcccccCCcc----Cccccccc
Q 003296           86 SGNAFHGEIPKGIADYRNLTLIDLSANNLSGS-VPDRIGELSKLEVLILSANNLDGRLPTSLASITTL----SRFAANQN  160 (833)
Q Consensus        86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L----~~l~l~~n  160 (833)
                      ++|.+++..+..|+++++|++|+|++|.+++. +|..|+++++|++|++++|.+++..|..+..+++|    ..+++++|
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            77777766555677777777777777777653 46777777777777777777777666777776666    66777777


Q ss_pred             cccccCChhhh-hcCCEEecccc---------------------------------------------------------
Q 003296          161 KFSGSVPGGIT-RFLRNLDLSYN---------------------------------------------------------  182 (833)
Q Consensus       161 ~l~~~~p~~~~-~~L~~L~Ls~N---------------------------------------------------------  182 (833)
                      .+++..|..+. ..|+.|++++|                                                         
T Consensus       188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~  267 (570)
T 2z63_A          188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL  267 (570)
T ss_dssp             CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred             CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence            77665554441 23566665554                                                         


Q ss_pred             -cccccCCccCCCCCCCCEEecccccCcccCCCCCC-cCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCC
Q 003296          183 -KLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS-PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIP  260 (833)
Q Consensus       183 -~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~-~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~  260 (833)
                       .+.+..|..+..+++|+.|++++|.+++ +|..+. .+|+.|++++|.+. .+|.   ..+++|+.|++++|.+.+..+
T Consensus       268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~~~  342 (570)
T 2z63_A          268 DYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNAFS  342 (570)
T ss_dssp             TEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCBCC
T ss_pred             hhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEeeccCccc-ccCc---ccccccCEEeCcCCccccccc
Confidence             2333344555566777777777777763 443332 36777777777754 3443   356677777777777766554


Q ss_pred             ccccCCCCCcEEEccCCccCCCC--hhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCc-ccccc
Q 003296          261 QQLGSCRSLTLLNLAQNELNGSL--PIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIP-SFLSN  337 (833)
Q Consensus       261 ~~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~  337 (833)
                      .  ..+++|+.|++++|.+.+..  |..+..+++|+.|++++|.+.+..+. |..+++|++|++++|.+.+..| ..+..
T Consensus       343 ~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~  419 (570)
T 2z63_A          343 E--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLS  419 (570)
T ss_dssp             C--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred             c--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhc
Confidence            4  66778888888888877543  56677778888888888887765544 7778888888888888876655 46777


Q ss_pred             CCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCC-ccCCCCccccc--ceeeccccccccchhhhhccCCCCCEE
Q 003296          338 LTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLS-GTIPMMPPRLQ--IALNLSSNLFEGPIPTTFARLNGLEVL  414 (833)
Q Consensus       338 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~~~--~~L~Ls~N~l~~~~p~~~~~l~~L~~L  414 (833)
                      +++|++|++++|.+.+..|..|..+++|++|++++|.++ +.+|.....+.  +.|++++|.+++..|..|..+++|+.|
T Consensus       420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  499 (570)
T 2z63_A          420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL  499 (570)
T ss_dssp             CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence            888888888888887777777888888888888888876 45665444333  567888888887777788888888888


Q ss_pred             ecccCcCccccchhccCCCCCCeeeCcCCcccccCCCC
Q 003296          415 DLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKF  452 (833)
Q Consensus       415 ~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~  452 (833)
                      ++++|++++.+|..|..+++|+.|++++|+++|..|..
T Consensus       500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             eCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence            88888888777777788888888888888888777653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-48  Score=473.98  Aligned_cols=437  Identities=22%  Similarity=0.247  Sum_probs=376.5

Q ss_pred             CCCCCCCCCEEECCCCCCCC-c-c-cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcc--cCCC
Q 003296            3 SCGGIDGLKLLNFSKNELVS-L-P-TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPIN--LGKT   77 (833)
Q Consensus         3 ~~~~l~~L~~L~ls~N~l~~-i-~-~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~--~~~l   77 (833)
                      +++++++|++|+|++|.+.. + | +|.++++|++|+|++|+|+++.|..|.++++|++|+|++|.+++..|..  |.++
T Consensus        43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L  122 (844)
T 3j0a_A           43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL  122 (844)
T ss_dssp             SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred             HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence            57899999999999996654 6 4 5999999999999999999999999999999999999999999866554  9999


Q ss_pred             CCCCEEEccCCcCcccCC-ccccCCCCCCEEeccCCcCCccCCccccCC--CCCcEEECcCCcCCCCCCcccccCCc---
Q 003296           78 KALEELVLSGNAFHGEIP-KGIADYRNLTLIDLSANNLSGSVPDRIGEL--SKLEVLILSANNLDGRLPTSLASITT---  151 (833)
Q Consensus        78 ~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~---  151 (833)
                      ++|++|+|++|.+++..+ ..|+++++|++|+|++|.+++..+..|..+  ++|+.|+|++|.+++..|..++.+.+   
T Consensus       123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  202 (844)
T 3j0a_A          123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR  202 (844)
T ss_dssp             SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTT
T ss_pred             CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccc
Confidence            999999999999998765 689999999999999999999999999988  99999999999999999988877766   


Q ss_pred             ---cCccccccccccccCChhhh----------------------------------------hcCCEEecccccccccC
Q 003296          152 ---LSRFAANQNKFSGSVPGGIT----------------------------------------RFLRNLDLSYNKLLGVI  188 (833)
Q Consensus       152 ---L~~l~l~~n~l~~~~p~~~~----------------------------------------~~L~~L~Ls~N~l~~~~  188 (833)
                         |+.|++++|.+++..+..+.                                        ..|+.|+|++|.+.+..
T Consensus       203 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~  282 (844)
T 3j0a_A          203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN  282 (844)
T ss_dssp             TCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC
T ss_pred             cCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC
Confidence               99999999988765554331                                        45899999999999999


Q ss_pred             CccCCCCCCCCEEecccccCcccCCCCCC--cCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCC
Q 003296          189 PIDLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSC  266 (833)
Q Consensus       189 ~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l  266 (833)
                      |..|..+++|+.|+|++|.+++..|..+.  ++|+.|++++|.+.+ +++..|..+++|++|+|++|++.+..+..|..+
T Consensus       283 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l  361 (844)
T 3j0a_A          283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE-LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL  361 (844)
T ss_dssp             SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC-CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred             hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc-cCHHHhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence            99999999999999999999988887775  799999999999764 666789999999999999999999988899999


Q ss_pred             CCCcEEEccCCccCCCChhhhCCCCCCcEE--------------------EccCCcCCCcC-chhhcCCCcCceeeccCC
Q 003296          267 RSLTLLNLAQNELNGSLPIQLGSLGILQVM--------------------NLQLNKLSGEI-PSQFSQLKLLSTMNISWN  325 (833)
Q Consensus       267 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L--------------------~L~~N~l~~~~-p~~~~~l~~L~~L~Ls~N  325 (833)
                      ++|+.|+|++|.+++..     .+++|+.|                    ++++|++++.. +..+..+++|++|+|++|
T Consensus       362 ~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N  436 (844)
T 3j0a_A          362 EKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN  436 (844)
T ss_dssp             CCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC
T ss_pred             CCCCEEECCCCCCCccc-----CCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCC
Confidence            99999999999997532     14444444                    45555554432 223458899999999999


Q ss_pred             cCcccCcc-ccccCCCCCEEEccCCccc-----cccCccccCCCCCCEEEccCCcCCccCCCCccccc--ceeecccccc
Q 003296          326 SLSGSIPS-FLSNLTNLVNLNLRQNNLN-----GSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQ--IALNLSSNLF  397 (833)
Q Consensus       326 ~l~~~~~~-~~~~l~~L~~L~L~~N~l~-----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~--~~L~Ls~N~l  397 (833)
                      ++++..+. .+..+++|+.|+|++|.++     +..+..|.++++|+.|+|++|.+++..|.....+.  +.|+|++|++
T Consensus       437 ~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  516 (844)
T 3j0a_A          437 RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL  516 (844)
T ss_dssp             CCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCC
T ss_pred             cccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCC
Confidence            99976544 4667899999999999997     45567789999999999999999988876654443  6899999999


Q ss_pred             ccchhhhhccCCCCCEEecccCcCccccchhccCCCCCCeeeCcCCcccccCC
Q 003296          398 EGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVP  450 (833)
Q Consensus       398 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  450 (833)
                      ++..|..+.  ++|+.||+++|++++.+|..|   .+|+.+++++|++.+..+
T Consensus       517 ~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          517 TVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE  564 (844)
T ss_dssp             SSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred             CccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence            998887776  899999999999999999876   478999999999988665

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.7e-50  Score=439.00  Aligned_cols=266  Identities=17%  Similarity=0.217  Sum_probs=204.2

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec------C
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA------S  627 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~------~  627 (833)
                      +.|+..+.||+|+||+||+|+. .+|+.||||+++....  .....+.+.+|+++|++++|||||++++++..      .
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~--~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~  131 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFD--VVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEF  131 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTS--SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECcccc--chHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccC
Confidence            3577889999999999999997 5899999999953221  12234678999999999999999999999864      3


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                      +.+|||||||+ |+|.+++..  ...+++.++..|+.|++.||+|||   +.+||||||||+|||++.++.+||+|||+|
T Consensus       132 ~~~~ivmE~~~-g~L~~~i~~--~~~l~~~~~~~~~~qil~al~ylH---~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla  205 (398)
T 4b99_A          132 KSVYVVLDLME-SDLHQIIHS--SQPLTLEHVRYFLYQLLRGLKYMH---SAQVIHRDLKPSNLLVNENCELKIGDFGMA  205 (398)
T ss_dssp             CCEEEEEECCS-EEHHHHHTS--SSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             CEEEEEEeCCC-CCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCcCcCCCcCccccccCCCCCEEEeeccee
Confidence            57899999996 789999986  457999999999999999999999   789999999999999999999999999999


Q ss_pred             eeeCCCC--CCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccc
Q 003296          708 KVIDPSK--STGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDH  784 (833)
Q Consensus       708 ~~~~~~~--~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~  784 (833)
                      +......  ......+.+||+.|||||++.+. .|+.++||||+||++|||++|++||.+.+............+.....
T Consensus       206 ~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~  285 (398)
T 4b99_A          206 RGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPA  285 (398)
T ss_dssp             BCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGG
T ss_pred             eecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCChH
Confidence            8764321  12234568999999999998875 46999999999999999999999998765544332221111111000


Q ss_pred             cccc-----------ccc-CCchhH----HHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          785 ILDF-----------NVS-RTSLAV----RSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       785 ~~~~-----------~~~-~~~~~~----~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ....           ... .....+    .....++.+|+.+||+.||++|||++|+++|
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  345 (398)
T 4b99_A          286 VIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRH  345 (398)
T ss_dssp             GTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             HhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence            0000           000 000001    1124578899999999999999999999875

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=5.7e-49  Score=426.04  Aligned_cols=262  Identities=18%  Similarity=0.207  Sum_probs=199.8

Q ss_pred             HHHhcCCccccccCcccEEEEEEcC----CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecC
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVMP----SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLAS  627 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~  627 (833)
                      ..+.|+..+.||+|+||+||+|+.+    +++.||||++...      ....++.+|+++|+++ +|||||+++++|.++
T Consensus        19 l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~------~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~   92 (361)
T 4f9c_A           19 LSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPT------SHPIRIAAELQCLTVAGGQDNVMGVKYCFRKN   92 (361)
T ss_dssp             GGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTT------SCHHHHHHHHHHHHHTCSBTTBCCCSEEEEET
T ss_pred             ccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccc------cCHHHHHHHHHHHHHhcCCCCCceEEEEEEEC
Confidence            4567899999999999999999853    5789999998422      2345788999999998 699999999999999


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC-CCceecccee
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL-KEPQIGDIEL  706 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~-~~~ki~dfgl  706 (833)
                      +..|+|||||++|+|.++++     .+++.++..++.|++.||+|||   +.+||||||||+|||++.+ +.+||+|||+
T Consensus        93 ~~~~lvmE~~~g~~L~~~~~-----~l~~~~~~~~~~qll~al~ylH---~~gIiHRDiKPeNiLl~~~~~~~kl~DFGl  164 (361)
T 4f9c_A           93 DHVVIAMPYLEHESFLDILN-----SLSFQEVREYMLNLFKALKRIH---QFGIVHRDVKPSNFLYNRRLKKYALVDFGL  164 (361)
T ss_dssp             TEEEEEEECCCCCCHHHHHT-----TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTT
T ss_pred             CEEEEEEeCCCcccHHHHHc-----CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCcCCHHHeEEeCCCCeEEECcCCC
Confidence            99999999999999999985     3899999999999999999999   7899999999999999876 7999999999


Q ss_pred             eeeeCCCCC--------------------------CCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCC
Q 003296          707 CKVIDPSKS--------------------------TGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGK  759 (833)
Q Consensus       707 ~~~~~~~~~--------------------------~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~  759 (833)
                      |+.......                          .....+.+||+.|||||++.+. .|+.++||||+||++|||+||+
T Consensus       165 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~  244 (361)
T 4f9c_A          165 AQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGR  244 (361)
T ss_dssp             CEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTC
T ss_pred             CcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCC
Confidence            986543211                          0122356899999999998875 4899999999999999999999


Q ss_pred             CcccCCccHHHHHHHhhccccc---------cc-------cc--------------ccccccC----------CchhHHH
Q 003296          760 TAVNQGNELAKWVLRNSAQQDK---------LD-------HI--------------LDFNVSR----------TSLAVRS  799 (833)
Q Consensus       760 ~p~~~~~~~~~~~~~~~~~~~~---------~~-------~~--------------~~~~~~~----------~~~~~~~  799 (833)
                      .||..+.+..+.........+.         ..       ..              .+...+.          ....+..
T Consensus       245 ~Pf~~~~~~~~~l~~I~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  324 (361)
T 4f9c_A          245 YPFYKASDDLTALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWNE  324 (361)
T ss_dssp             SSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTEEEEESSCCCCCCHHHHHHHHC----------------------CTT
T ss_pred             CCCCCCCCHHHHHHHHHHhcCCccchhhhhhccccccccccCcchhhhHHHHhhcccccccccccccccccccccccccc
Confidence            9997554432211111000000         00       00              0000000          0000112


Q ss_pred             HHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          800 QMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       800 ~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .+.++.+++.+||+.||++|||++|+++|
T Consensus       325 is~~a~DLl~~lL~~dP~~R~ta~eaL~H  353 (361)
T 4f9c_A          325 VPDEAYDLLDKLLDLNPASRITAEEALLH  353 (361)
T ss_dssp             CCHHHHHHHHHHTCSCTTTSCCHHHHHTS
T ss_pred             CCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence            34578899999999999999999999976

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=3e-49  Score=449.30  Aligned_cols=250  Identities=17%  Similarity=0.171  Sum_probs=202.2

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHH---HHHHhcCCCCCcccceEEEecCCce
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKE---LEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E---~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      ++|+..++||+|+||+||+|+. .+|+.||||++. +...........+.+|   +++++.++|||||+++++|++++.+
T Consensus       189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~-K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l  267 (689)
T 3v5w_A          189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLD-KKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL  267 (689)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEE-HHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred             HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEe-HHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence            5688899999999999999997 489999999994 3232233333444444   6777888999999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      |+|||||+||+|.+++..  .+.+++..+..|+.||+.||+|||   +.+||||||||+|||++.+|.+||+|||+|+..
T Consensus       268 ylVmEy~~GGdL~~~l~~--~~~l~E~~a~~y~~qIl~aL~yLH---~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~  342 (689)
T 3v5w_A          268 SFILDLMNGGDLHYHLSQ--HGVFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDF  342 (689)
T ss_dssp             EEEECCCCSCBHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EEEEecCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCchHHeEEeCCCCEEecccceeeec
Confidence            999999999999999986  456999999999999999999999   889999999999999999999999999999987


Q ss_pred             CCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCcc--HHHHHHHhhccccccccccc
Q 003296          711 DPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNE--LAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       711 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~  787 (833)
                      ....    ..+.+||+.|||||++.. ..|+.++||||+||++|||++|+.||.+...  .............       
T Consensus       343 ~~~~----~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~-------  411 (689)
T 3v5w_A          343 SKKK----PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAV-------  411 (689)
T ss_dssp             SSCC----CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCC-------
T ss_pred             CCCC----CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCCCC-------
Confidence            5432    246799999999999864 5799999999999999999999999974322  2111111111100       


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCC-----HHHHHHH
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPK-----MKSVLRM  828 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps-----~~evl~~  828 (833)
                       .++      ...+.++.+++.+||+.||++|++     ++||++|
T Consensus       412 -~~p------~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~H  450 (689)
T 3v5w_A          412 -ELP------DSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKES  450 (689)
T ss_dssp             -CCC------TTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTTS
T ss_pred             -CCC------ccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhcC
Confidence             011      123457889999999999999998     6888764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.6e-46  Score=435.23  Aligned_cols=438  Identities=21%  Similarity=0.237  Sum_probs=379.4

Q ss_pred             CCCCCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCE
Q 003296            3 SCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEE   82 (833)
Q Consensus         3 ~~~~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~   82 (833)
                      .|......+.+++++..++.+|. .-.+++++|||++|+|+++.+.+|.++++|++|+|++|+|+++.|..|.++++|++
T Consensus         2 ~c~~~~~~~~~~c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~   80 (570)
T 2z63_A            2 PCVEVVPNITYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST   80 (570)
T ss_dssp             CSEEEETTTEEECCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             CccccCCCcEEEeCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCE
Confidence            34445567889999999999986 33468999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCC-CCCcccccCCccCcccccccc
Q 003296           83 LVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDG-RLPTSLASITTLSRFAANQNK  161 (833)
Q Consensus        83 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~l~l~~n~  161 (833)
                      |+|++|.+++..|..|+++++|++|+|++|++++..+..|+++++|++|+|++|.+++ .+|..|.++++|+.|++++|+
T Consensus        81 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~  160 (570)
T 2z63_A           81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (570)
T ss_dssp             EECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred             EeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence            9999999999999999999999999999999998877789999999999999999998 469999999999999999999


Q ss_pred             ccccCChhh--hhcC----CEEecccccccccCCccCCCCCCCCEEeccccc----------------------------
Q 003296          162 FSGSVPGGI--TRFL----RNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNM----------------------------  207 (833)
Q Consensus       162 l~~~~p~~~--~~~L----~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~----------------------------  207 (833)
                      +++..|..+  ...|    +.|++++|.+.+..|..+... +|+.|++++|.                            
T Consensus       161 l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~  239 (570)
T 2z63_A          161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN  239 (570)
T ss_dssp             CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred             cceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence            998777655  4556    899999999999888777655 79999888872                            


Q ss_pred             ------------------------------CcccCCCCCC--cCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCC
Q 003296          208 ------------------------------LEGSLPQNMS--PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSF  255 (833)
Q Consensus       208 ------------------------------l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l  255 (833)
                                                    +.+..|..+.  ++|+.|++++|.+.. +|. .+..+ +|++|++++|.+
T Consensus       240 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~-~~~~~-~L~~L~l~~n~~  316 (570)
T 2z63_A          240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKD-FSYNF-GWQHLELVNCKF  316 (570)
T ss_dssp             CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCB-CCSCC-CCSEEEEESCBC
T ss_pred             chhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhh-hhccC-CccEEeeccCcc
Confidence                                          2233344443  678889998888763 543 45666 899999999998


Q ss_pred             CCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcC--chhhcCCCcCceeeccCCcCcccCcc
Q 003296          256 TGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEI--PSQFSQLKLLSTMNISWNSLSGSIPS  333 (833)
Q Consensus       256 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~~~  333 (833)
                      .. +|.  ..+++|+.|++++|.+.+..+.  ..+++|+.|++++|.+++..  |..+..+++|++|++++|.+.+..+.
T Consensus       317 ~~-l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  391 (570)
T 2z63_A          317 GQ-FPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN  391 (570)
T ss_dssp             SS-CCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE
T ss_pred             cc-cCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc
Confidence            84 443  4788899999999998876655  78899999999999998765  78899999999999999999976555


Q ss_pred             ccccCCCCCEEEccCCccccccC-ccccCCCCCCEEEccCCcCCccCCCCccccc--ceeeccccccc-cchhhhhccCC
Q 003296          334 FLSNLTNLVNLNLRQNNLNGSIP-NSITNMRSLIELQLGGNQLSGTIPMMPPRLQ--IALNLSSNLFE-GPIPTTFARLN  409 (833)
Q Consensus       334 ~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~--~~L~Ls~N~l~-~~~p~~~~~l~  409 (833)
                       +..+++|+.|++++|.+.+..| ..+..+++|++|++++|.+.+..|.....+.  +.|++++|.++ +.+|..|..++
T Consensus       392 -~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~  470 (570)
T 2z63_A          392 -FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR  470 (570)
T ss_dssp             -EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             -ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc
Confidence             9999999999999999998766 5789999999999999999988776655443  68999999998 67899999999


Q ss_pred             CCCEEecccCcCccccchhccCCCCCCeeeCcCCcccccCCC
Q 003296          410 GLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPK  451 (833)
Q Consensus       410 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~  451 (833)
                      +|+.|++++|++++..|..|..+++|+.|++++|++++..|.
T Consensus       471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  512 (570)
T 2z63_A          471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG  512 (570)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence            999999999999999999999999999999999999988764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=6.6e-47  Score=444.61  Aligned_cols=352  Identities=20%  Similarity=0.286  Sum_probs=229.2

Q ss_pred             CCcCcccCCccccCCCCCCEEeccCCcCCcc-----------------CCcccc--CCCCCcEEECcCCcCCCCCCcccc
Q 003296           87 GNAFHGEIPKGIADYRNLTLIDLSANNLSGS-----------------VPDRIG--ELSKLEVLILSANNLDGRLPTSLA  147 (833)
Q Consensus        87 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-----------------~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~  147 (833)
                      +|++++ +|.+|+++++|++|+|++|++++.                 +|..++  ++++|++|+|++|.+.+.+|..|+
T Consensus       192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred             cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence            456665 566666666666666666666653                 566666  666666666666666666666666


Q ss_pred             cCCccCcccccccc-ccc-cCChhhh--------hcCCEEecccccccccCCc--cCCCCCCCCEEecccccCcccCCCC
Q 003296          148 SITTLSRFAANQNK-FSG-SVPGGIT--------RFLRNLDLSYNKLLGVIPI--DLLSHPNLQTIDLSVNMLEGSLPQN  215 (833)
Q Consensus       148 ~l~~L~~l~l~~n~-l~~-~~p~~~~--------~~L~~L~Ls~N~l~~~~~~--~~~~~~~L~~L~Ls~N~l~~~~p~~  215 (833)
                      ++++|+.|++++|+ +++ .+|..+.        +.|++|+|++|+++ .+|.  .+..+++|++|++++|.++|.+| .
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~  348 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A  348 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred             cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence            66666666666665 665 5555442        45666666666666 4555  56666666666666666666666 4


Q ss_pred             CC--cCCcEEEcCCccccCCCCccccCCCCC-CCEEECCCCCCCCCCCccccCCC--CCcEEEccCCccCCCChhhhC--
Q 003296          216 MS--PNLVRLRLGTNLLIGEIPSATFTSLEK-LTYLELDNNSFTGMIPQQLGSCR--SLTLLNLAQNELNGSLPIQLG--  288 (833)
Q Consensus       216 ~~--~~L~~L~l~~n~l~~~~~~~~f~~l~~-L~~L~L~~N~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~p~~~~--  288 (833)
                      +.  ++|+.|++++|.+. .+|. .|..+++ |++|++++|+++ .+|..+..++  +|+.|++++|.+.+..|..+.  
T Consensus       349 ~~~l~~L~~L~L~~N~l~-~lp~-~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~  425 (636)
T 4eco_A          349 FGSEIKLASLNLAYNQIT-EIPA-NFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL  425 (636)
T ss_dssp             CEEEEEESEEECCSSEEE-ECCT-TSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred             hCCCCCCCEEECCCCccc-cccH-hhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence            43  56666666666655 3443 3555666 666666666666 4555555443  666666666666666666665  


Q ss_pred             -----CCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCC-------CCCEEEccCCccccccC
Q 003296          289 -----SLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLT-------NLVNLNLRQNNLNGSIP  356 (833)
Q Consensus       289 -----~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-------~L~~L~L~~N~l~~~~p  356 (833)
                           .+.+|+.|+|++|.++...+..|..+++|++|+|++|+++...+..+..+.       +|+.|+|++|+++ .+|
T Consensus       426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp  504 (636)
T 4eco_A          426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLS  504 (636)
T ss_dssp             CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCC
T ss_pred             ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccC
Confidence                 556666666666666644444455566666666666666633223333222       6666666666666 455


Q ss_pred             cccc--CCCCCCEEEccCCcCCccCCCCccccc--ceeec------cccccccchhhhhccCCCCCEEecccCcCccccc
Q 003296          357 NSIT--NMRSLIELQLGGNQLSGTIPMMPPRLQ--IALNL------SSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIP  426 (833)
Q Consensus       357 ~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~~~--~~L~L------s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  426 (833)
                      ..+.  .+++|+.|+|++|++++ +|.....+.  +.|+|      ++|.+.+.+|..|..+++|+.|++++|++ +.+|
T Consensus       505 ~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip  582 (636)
T 4eco_A          505 DDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVN  582 (636)
T ss_dssp             GGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred             hhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccC
Confidence            5554  66666666666666665 454443332  45555      67889999999999999999999999999 5778


Q ss_pred             hhccCCCCCCeeeCcCCcccccC
Q 003296          427 QLLAQMPTLTQLLLTNNQLSGVV  449 (833)
Q Consensus       427 ~~~~~l~~L~~L~ls~N~l~~~~  449 (833)
                      ..+.  ++|+.|++++|++....
T Consensus       583 ~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          583 EKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             SCCC--TTCCEEECCSCTTCEEE
T ss_pred             HhHh--CcCCEEECcCCCCcccc
Confidence            7765  79999999999987653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.6e-47  Score=438.23  Aligned_cols=427  Identities=21%  Similarity=0.267  Sum_probs=313.1

Q ss_pred             CEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcC
Q 003296           11 KLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAF   90 (833)
Q Consensus        11 ~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l   90 (833)
                      ++|||++|.|+.+|.- -.++|++|||++|+|+++.+..|.++++|++|+|++|+|+++.|..|.++++|++|+|++|+|
T Consensus         3 ~~l~ls~n~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l   81 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKD-LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL   81 (520)
T ss_dssp             CEEECTTSCCSSCCCS-CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred             ceEecCCCCccccccc-ccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence            5788888888888751 127888888888888888878888888888888888888887788888888888888888888


Q ss_pred             cccCCccccCCCCCCEEeccCCcCCc-cCCccccCCCCCcEEECcCCcCCCCCCcccccCCcc--Cccccccccc--ccc
Q 003296           91 HGEIPKGIADYRNLTLIDLSANNLSG-SVPDRIGELSKLEVLILSANNLDGRLPTSLASITTL--SRFAANQNKF--SGS  165 (833)
Q Consensus        91 ~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L--~~l~l~~n~l--~~~  165 (833)
                      +. +|..  .+++|++|+|++|++++ .+|..|+++++|++|+|++|.+++   ..+..+++|  +.|++++|.+  .+.
T Consensus        82 ~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~  155 (520)
T 2z7x_B           82 VK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKE  155 (520)
T ss_dssp             CE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred             ee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccc
Confidence            84 4444  78888888888888876 367788888888888888888876   456666666  8888888887  555


Q ss_pred             CChhhh----------------------------hcCCEEeccccc-------ccccCCccCCCCCCCCEEecccccCcc
Q 003296          166 VPGGIT----------------------------RFLRNLDLSYNK-------LLGVIPIDLLSHPNLQTIDLSVNMLEG  210 (833)
Q Consensus       166 ~p~~~~----------------------------~~L~~L~Ls~N~-------l~~~~~~~~~~~~~L~~L~Ls~N~l~~  210 (833)
                      .|..+.                            ..|+.|++++|.       +.+.+| .+..+++|+.|++++|.+++
T Consensus       156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~  234 (520)
T 2z7x_B          156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTW  234 (520)
T ss_dssp             CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEH
T ss_pred             ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCH
Confidence            555442                            224444444443       333333 44555556666665555543


Q ss_pred             cCCCC-----CCcCCcEEEcCCccccCCCCcccc----CCCCCCCEEECCCCCCCCCCC-ccccCC---CCCcEEEccCC
Q 003296          211 SLPQN-----MSPNLVRLRLGTNLLIGEIPSATF----TSLEKLTYLELDNNSFTGMIP-QQLGSC---RSLTLLNLAQN  277 (833)
Q Consensus       211 ~~p~~-----~~~~L~~L~l~~n~l~~~~~~~~f----~~l~~L~~L~L~~N~l~~~~~-~~~~~l---~~L~~L~L~~N  277 (833)
                      ..+..     ..++|+.|++++|.+.+.+|...|    ..+++|+.+++++|.+  .+| ..+..+   .+|+.|++++|
T Consensus       235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n  312 (520)
T 2z7x_B          235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGT  312 (520)
T ss_dssp             HHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESS
T ss_pred             HHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCC
Confidence            22111     123677777777777766665443    6677777778877777  333 344443   56888888888


Q ss_pred             ccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcc--cCccccccCCCCCEEEccCCcccccc
Q 003296          278 ELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSG--SIPSFLSNLTNLVNLNLRQNNLNGSI  355 (833)
Q Consensus       278 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~  355 (833)
                      .+....  .+..+++|+.|++++|++++..|..+..+++|++|++++|++++  .+|..+..+++|++|+|++|++++.+
T Consensus       313 ~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l  390 (520)
T 2z7x_B          313 RMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE  390 (520)
T ss_dssp             CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG
T ss_pred             cccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc
Confidence            775432  12677888999999999988888888888899999999998886  45677888899999999999988745


Q ss_pred             Cc-cccCCCCCCEEEccCCcCCccCCCCcccccceeeccccccccchhhhhccCCCCCEEecccCcCccccchhccCCCC
Q 003296          356 PN-SITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPT  434 (833)
Q Consensus       356 p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  434 (833)
                      |. .+..+++|++|++++|++++.+|...+...+.|++++|.++ .+|..+..+++|+.|++++|+|+...+..+..+++
T Consensus       391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~  469 (520)
T 2z7x_B          391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS  469 (520)
T ss_dssp             GGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             ccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCc
Confidence            54 47888899999999998887766554444567889999888 67776778889999999999988544445888888


Q ss_pred             CCeeeCcCCcccccCC
Q 003296          435 LTQLLLTNNQLSGVVP  450 (833)
Q Consensus       435 L~~L~ls~N~l~~~~p  450 (833)
                      |+.|++++|++++..+
T Consensus       470 L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          470 LQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CCEEECCSSCBCCCHH
T ss_pred             ccEEECcCCCCcccCC
Confidence            9999999998877543

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=3.1e-48  Score=445.89  Aligned_cols=252  Identities=18%  Similarity=0.239  Sum_probs=209.5

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||.||+|+. .+|+.||||++.....    ...+.+.+|+++|++++|||||+++++|.+++.+|+|
T Consensus       157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~----~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv  232 (573)
T 3uto_A          157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHE----SDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMI  232 (573)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSH----HHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccch----hhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEE
Confidence            5788899999999999999997 5899999999953221    2246789999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC--CCceeccceeeeeeC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL--KEPQIGDIELCKVID  711 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~--~~~ki~dfgl~~~~~  711 (833)
                      ||||+||+|.+++... ...+++.++..|+.||++||+|||   +.+|+||||||+|||++.+  +.+||+|||+|+...
T Consensus       233 ~E~~~gg~L~~~i~~~-~~~l~e~~~~~~~~qi~~al~ylH---~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~  308 (573)
T 3uto_A          233 YEFMSGGELFEKVADE-HNKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLD  308 (573)
T ss_dssp             EECCCCCBHHHHHTCT-TSCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECC
T ss_pred             EeecCCCcHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCChhhccccCCCCCCEEEeeccceeEcc
Confidence            9999999999999753 346999999999999999999999   7899999999999999854  889999999999875


Q ss_pred             CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      ...   ...+.+||+.|||||++.+..|+.++||||+||++|||++|+.||.+........ ..........        
T Consensus       309 ~~~---~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~~~-~i~~~~~~~~--------  376 (573)
T 3uto_A          309 PKQ---SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLR-NVKSCDWNMD--------  376 (573)
T ss_dssp             TTS---EEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHH-HHHTTCCCCC--------
T ss_pred             CCC---ceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHH-HHHhCCCCCC--------
Confidence            443   3356789999999999999999999999999999999999999998655433222 1111111111        


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        ...+...+.++.+++.+||+.||++|||+.|+++|
T Consensus       377 --~~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~H  411 (573)
T 3uto_A          377 --DSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEH  411 (573)
T ss_dssp             --SGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             --cccccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence              11112234578899999999999999999999985

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.7e-46  Score=432.97  Aligned_cols=433  Identities=20%  Similarity=0.232  Sum_probs=242.4

Q ss_pred             CCCCEEECCCCCCCCcc--cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296            8 DGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL   85 (833)
Q Consensus         8 ~~L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   85 (833)
                      ++|++|++++|.+++++  .|..+++|++|+|++|+|+++.+.+|.++++|++|+|++|++++..|..|+++++|++|+|
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            46777777777777652  4667777777777777777766667777777777777777777666666777777777777


Q ss_pred             cCCcCccc-CCccccCCCCCCEEeccCCc-CCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCcccccccccc
Q 003296           86 SGNAFHGE-IPKGIADYRNLTLIDLSANN-LSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFS  163 (833)
Q Consensus        86 ~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~  163 (833)
                      ++|.+++. .|..|+++++|++|+|++|. +..+.+..|+++++|++|+|++|.+++..|..+..+++|+.|+++.|.+.
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  185 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA  185 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence            77777652 45667777777777777776 34344456777777777777777777777777777777777777766654


Q ss_pred             ccCChhh---hhcCCEEecccccccccC--Cc-cCCCCCCCCEEecccccCcccCCCCC------CcCCcEEEcCCcccc
Q 003296          164 GSVPGGI---TRFLRNLDLSYNKLLGVI--PI-DLLSHPNLQTIDLSVNMLEGSLPQNM------SPNLVRLRLGTNLLI  231 (833)
Q Consensus       164 ~~~p~~~---~~~L~~L~Ls~N~l~~~~--~~-~~~~~~~L~~L~Ls~N~l~~~~p~~~------~~~L~~L~l~~n~l~  231 (833)
                       .+|..+   .+.|++|++++|++.+..  |. ....+++|+.|++++|.+++..+..+      .++++.+++++|.+.
T Consensus       186 -~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~  264 (549)
T 2z81_A          186 -FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN  264 (549)
T ss_dssp             -THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred             -ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence             223322   345777777777776542  11 12335677777777777654332211      145666666666654


Q ss_pred             CCCC-----ccccCCCCCCCEEECCCCCCCCC-----CCccccCCCCCcEEEccCCccCCCChhhh-CCCCCCcEEEccC
Q 003296          232 GEIP-----SATFTSLEKLTYLELDNNSFTGM-----IPQQLGSCRSLTLLNLAQNELNGSLPIQL-GSLGILQVMNLQL  300 (833)
Q Consensus       232 ~~~~-----~~~f~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~  300 (833)
                      +...     ...+..+++|+.|++.++.+...     .+..+..+++|+.|++++|.+. .+|..+ ..+++|+.|++++
T Consensus       265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~  343 (549)
T 2z81_A          265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSE  343 (549)
T ss_dssp             CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCS
T ss_pred             ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccC
Confidence            3110     01223344455555544443321     0111222345555555555554 333333 3455555555555


Q ss_pred             CcCCCcCch---hhcCCCcCceeeccCCcCcccCc--cccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcC
Q 003296          301 NKLSGEIPS---QFSQLKLLSTMNISWNSLSGSIP--SFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQL  375 (833)
Q Consensus       301 N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  375 (833)
                      |++++.+|.   .+..+++|++|++++|++++..+  ..+..+++|++|+|++|+++ .+|..+..+++|++|++++|.+
T Consensus       344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l  422 (549)
T 2z81_A          344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI  422 (549)
T ss_dssp             SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCC
T ss_pred             CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCc
Confidence            555554432   24445555555555555554322  33555555555555555555 3455555555555555555555


Q ss_pred             CccCCCCcccccceeeccccccccchhhhhccCCCCCEEecccCcCccccchhccCCCCCCeeeCcCCcccccCC
Q 003296          376 SGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVP  450 (833)
Q Consensus       376 ~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  450 (833)
                      ++. |...+...+.|++++|++++.+    ..+++|+.|++++|+|+ .+|. ...+++|+.|++++|++++.+|
T Consensus       423 ~~l-~~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~  490 (549)
T 2z81_A          423 RVV-KTCIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPD  490 (549)
T ss_dssp             SCC-CTTSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCT
T ss_pred             ccc-cchhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCH
Confidence            422 2211122344555555555432    24455555555555555 3333 2345555555555555555444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.7e-45  Score=437.49  Aligned_cols=359  Identities=17%  Similarity=0.247  Sum_probs=183.8

Q ss_pred             CcCCCCCCcccCCCCCCCEEEccCCcCcc-----------------cCCcccc--CCCCCCEEeccCCcCCccCCccccC
Q 003296           64 NKFNGFLPINLGKTKALEELVLSGNAFHG-----------------EIPKGIA--DYRNLTLIDLSANNLSGSVPDRIGE  124 (833)
Q Consensus        64 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-----------------~~p~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~  124 (833)
                      |+|++ +|..|+++++|++|+|++|.|++                 .+|..++  ++++|++|+|++|++.+.+|..|++
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~  513 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD  513 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence            44444 34445555555555555555554                 1444444  5555555555555554455555555


Q ss_pred             CCCCcEEECcCCc-CCC-CCCcccccCC-------ccCccccccccccccCCh--hh--hhcCCEEecccccccccCCcc
Q 003296          125 LSKLEVLILSANN-LDG-RLPTSLASIT-------TLSRFAANQNKFSGSVPG--GI--TRFLRNLDLSYNKLLGVIPID  191 (833)
Q Consensus       125 l~~L~~L~Ls~N~-l~~-~~p~~~~~l~-------~L~~l~l~~n~l~~~~p~--~~--~~~L~~L~Ls~N~l~~~~~~~  191 (833)
                      +++|++|+|++|+ +++ .+|..++.++       +|+.|++++|.++ .+|.  .+  ++.|+.|+|++|++. .+| .
T Consensus       514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~  590 (876)
T 4ecn_A          514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A  590 (876)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred             CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence            5555555555554 444 4444443333       4455555555544 3443  22  233445555555444 333 4


Q ss_pred             CCCCCCCCEEecccccCcccCCCCCC--cC-CcEEEcCCccccCCCCccccCCCC--CCCEEECCCCCCCCCCCccc---
Q 003296          192 LLSHPNLQTIDLSVNMLEGSLPQNMS--PN-LVRLRLGTNLLIGEIPSATFTSLE--KLTYLELDNNSFTGMIPQQL---  263 (833)
Q Consensus       192 ~~~~~~L~~L~Ls~N~l~~~~p~~~~--~~-L~~L~l~~n~l~~~~~~~~f~~l~--~L~~L~L~~N~l~~~~~~~~---  263 (833)
                      |..+++|+.|+|++|.++ .+|..+.  ++ |+.|++++|.+. .+| ..|..++  +|+.|+|++|++.+.+|...   
T Consensus       591 ~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l  667 (876)
T 4ecn_A          591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM  667 (876)
T ss_dssp             CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred             hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc-hhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence            444445555555555544 3443332  23 444555444443 232 2233322  24455555555444333211   


Q ss_pred             c--CCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCC-------CcCceeeccCCcCcccCccc
Q 003296          264 G--SCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQL-------KLLSTMNISWNSLSGSIPSF  334 (833)
Q Consensus       264 ~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-------~~L~~L~Ls~N~l~~~~~~~  334 (833)
                      .  .+++|+.|+|++|.+....+..+..+++|+.|+|++|+++...+..+...       ++|+.|+|++|+++ .+|..
T Consensus       668 ~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~  746 (876)
T 4ecn_A          668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDD  746 (876)
T ss_dssp             TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGG
T ss_pred             ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHH
Confidence            1  12244455555555442222222344445555555554442222222111       14445555555444 33444


Q ss_pred             cc--cCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCccCCCCcccccceeeccccccccchhhhhccCCCCC
Q 003296          335 LS--NLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLE  412 (833)
Q Consensus       335 ~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~  412 (833)
                      +.  .+++|+.|+|++|++++ +|..+..+++|+.|+|++|+                ++++|.+.+.+|..|..+++|+
T Consensus       747 l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~----------------~ls~N~l~~~ip~~l~~L~~L~  809 (876)
T 4ecn_A          747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR----------------DAEGNRILRQWPTGITTCPSLI  809 (876)
T ss_dssp             GSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB----------------CTTCCBCCCCCCTTGGGCSSCC
T ss_pred             hhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC----------------CcccccccccChHHHhcCCCCC
Confidence            43  44455555555555443 34444445555555554443                3456899999999999999999


Q ss_pred             EEecccCcCccccchhccCCCCCCeeeCcCCcccccCC
Q 003296          413 VLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVP  450 (833)
Q Consensus       413 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  450 (833)
                      .|+|++|+| +.+|..+.  ++|+.|++++|++....+
T Consensus       810 ~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~  844 (876)
T 4ecn_A          810 QLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDV  844 (876)
T ss_dssp             EEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred             EEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence            999999999 67887765  699999999999976644

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=1.5e-45  Score=397.09  Aligned_cols=271  Identities=28%  Similarity=0.446  Sum_probs=223.2

Q ss_pred             HHHHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~  631 (833)
                      .++++|+..+.||+|+||.||+|+..+|+.||||++....    ....+.|.+|++++++++|||||+++++|..++..+
T Consensus        36 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  111 (321)
T 2qkw_B           36 EATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPES----SQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMI  111 (321)
T ss_dssp             CCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCC----SSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCE
T ss_pred             HHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccC----hHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEE
Confidence            4556788999999999999999998889999999984321    233568999999999999999999999999999999


Q ss_pred             EEEeeCCCCChhhhhhcCCC--CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          632 LFYEYAPKGTLFDVLHGCLE--NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~--~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                      +||||+++|+|.+++.....  ..++|.++..++.|+++||+|||   ..+|+||||||+||+++.++.+|++|||+++.
T Consensus       112 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~  188 (321)
T 2qkw_B          112 LIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLH---TRAIIHRDVKSINILLDENFVPKITDFGISKK  188 (321)
T ss_dssp             EEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCSTTEEECTTCCEEECCCTTCEE
T ss_pred             EEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhc---CCCeecCCCCHHHEEECCCCCEEEeecccccc
Confidence            99999999999999976432  35899999999999999999999   78999999999999999999999999999987


Q ss_pred             eCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCc-----cHHHHHHHhhcccccccc
Q 003296          710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGN-----ELAKWVLRNSAQQDKLDH  784 (833)
Q Consensus       710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~-----~~~~~~~~~~~~~~~~~~  784 (833)
                      ..............||+.|+|||++.+..++.++|||||||++|||+||+.||.+..     ....|....... ..+..
T Consensus       189 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~  267 (321)
T 2qkw_B          189 GTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNN-GQLEQ  267 (321)
T ss_dssp             CSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTT-TCCCS
T ss_pred             cccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhcccc-ccHHH
Confidence            643332223345679999999999988899999999999999999999999997432     233343322222 33444


Q ss_pred             cccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          785 ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       785 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .+++......  ....+.++.+++.+||+.||++|||+.||+++|+.+
T Consensus       268 ~~~~~~~~~~--~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~  313 (321)
T 2qkw_B          268 IVDPNLADKI--RPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYA  313 (321)
T ss_dssp             SSSSSCTTCS--CHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             hcChhhcccc--CHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHH
Confidence            4454443222  235677899999999999999999999999999875

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=1.8e-45  Score=397.42  Aligned_cols=278  Identities=28%  Similarity=0.490  Sum_probs=225.7

Q ss_pred             hhHHHHHHHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec
Q 003296          547 IDFTKAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA  626 (833)
Q Consensus       547 ~~~~~~~~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~  626 (833)
                      .++. ...++|...+.||+|+||.||+|...+|+.||||++....   .......|.+|++++++++|||||+++++|..
T Consensus        23 ~~~~-~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~   98 (326)
T 3uim_A           23 RELQ-VASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEER---TQGGELQFQTEVEMISMAVHRNLLRLRGFCMT   98 (326)
T ss_dssp             HHHH-TTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC--------CCCHHHHHHHGGGTCCCTTBCCCCEEECC
T ss_pred             HHHH-HHhhccccceeEecCCCcEEEEEEecCCCEEEEEEecccc---CchHHHHHHHHHHHHHhccCCCccceEEEEec
Confidence            3444 6778899999999999999999998889999999995322   12234579999999999999999999999999


Q ss_pred             CCceEEEEeeCCCCChhhhhhcCCC--CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccc
Q 003296          627 SDSAYLFYEYAPKGTLFDVLHGCLE--NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDI  704 (833)
Q Consensus       627 ~~~~~lv~ey~~~g~L~~~l~~~~~--~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~df  704 (833)
                      ++..++||||+++|+|.++++....  ..++|..+..++.|++.||+|||+.+.++|+||||||+||+++.++.+||+||
T Consensus        99 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~Df  178 (326)
T 3uim_A           99 PTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDF  178 (326)
T ss_dssp             SSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEECCC
T ss_pred             CCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEeccC
Confidence            9999999999999999999986432  35999999999999999999999544449999999999999999999999999


Q ss_pred             eeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCccc-------CCccHHHHHHHhhc
Q 003296          705 ELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVN-------QGNELAKWVLRNSA  777 (833)
Q Consensus       705 gl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~-------~~~~~~~~~~~~~~  777 (833)
                      |+++....... .......||+.|+|||++.+..++.++|||||||++|||+||+.||.       .......|+.....
T Consensus       179 g~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~  257 (326)
T 3uim_A          179 GLAKLMDYKDT-HVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLK  257 (326)
T ss_dssp             SSCEECCSSSS-CEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTS
T ss_pred             ccccccCcccc-cccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhh
Confidence            99987753332 22345679999999999988889999999999999999999999995       12233444433222


Q ss_pred             ccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          778 QQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      . .......+.......  ....+.++.+++.+||+.||++|||+.||+++|+..
T Consensus       258 ~-~~~~~~~~~~~~~~~--~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~  309 (326)
T 3uim_A          258 E-KKLEALVDVDLQGNY--KDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD  309 (326)
T ss_dssp             S-CCSTTSSCTTCTTSC--CHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTS
T ss_pred             c-hhhhhhcChhhcccc--CHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCc
Confidence            2 334444444443322  245678899999999999999999999999999864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.7e-43  Score=418.19  Aligned_cols=434  Identities=21%  Similarity=0.213  Sum_probs=223.5

Q ss_pred             CCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCc
Q 003296           10 LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNA   89 (833)
Q Consensus        10 L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~   89 (833)
                      -++.+|++..|+.||. .-.+++++|||++|+|+++.+.+|.++++|++|||++|+|+++.|.+|.++++|++|+|++|+
T Consensus        33 ~~~~~c~~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           33 NITYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             TTEEECTTSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             CCEEECCCCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence            3455666666666653 112356666666666666655566666666666666666665555566666666666666666


Q ss_pred             CcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCC-CCcccccCCccCccccccccccccCCh
Q 003296           90 FHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGR-LPTSLASITTLSRFAANQNKFSGSVPG  168 (833)
Q Consensus        90 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~l~l~~n~l~~~~p~  168 (833)
                      |+++.+..|.++++|++|+|++|+|+++.+..|+++++|++|+|++|.+++. .|..+..+++|+.|++++|++++..|.
T Consensus       112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence            6655555566666666666666666655555566666666666666666542 355555566666666666666555444


Q ss_pred             hhh--h----cCCEEecccccccccCCccCCC------------------------------------------------
Q 003296          169 GIT--R----FLRNLDLSYNKLLGVIPIDLLS------------------------------------------------  194 (833)
Q Consensus       169 ~~~--~----~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------------  194 (833)
                      .+.  .    .+..++++.|.+..+.+..+..                                                
T Consensus       192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~  271 (635)
T 4g8a_A          192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD  271 (635)
T ss_dssp             GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred             cccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccc
Confidence            331  1    1224445555444332221111                                                


Q ss_pred             ---------------------------------CCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCC
Q 003296          195 ---------------------------------HPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTS  241 (833)
Q Consensus       195 ---------------------------------~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~  241 (833)
                                                       ..+++.+++..|.+....+..+...++.|++.+|.+.. ++.   ..
T Consensus       272 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~---~~  347 (635)
T 4g8a_A          272 KSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ-FPT---LK  347 (635)
T ss_dssp             TTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESS-CCC---CB
T ss_pred             ccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccC-cCc---cc
Confidence                                             11222222222222221111122334444444444322 111   12


Q ss_pred             CCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCC--CChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCce
Q 003296          242 LEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNG--SLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLST  319 (833)
Q Consensus       242 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  319 (833)
                      +..|+.++++.|.+...  ..+..+++|+.|++++|.+..  ..+..+..+.+|+.++++.|.+... +..|..+++|+.
T Consensus       348 l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~  424 (635)
T 4g8a_A          348 LKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEH  424 (635)
T ss_dssp             CTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCE
T ss_pred             chhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccc
Confidence            33444444444443322  123345666666666666532  2344445555666666666555432 334455555666


Q ss_pred             eeccCCcCcccCc-cccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCc-cCCCCccccc--ceeecccc
Q 003296          320 MNISWNSLSGSIP-SFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSG-TIPMMPPRLQ--IALNLSSN  395 (833)
Q Consensus       320 L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~~~--~~L~Ls~N  395 (833)
                      ++++.|+.....+ ..|..+++++.++++.|.+.+..+..+..+++|+.|+|++|.+.. ..|.....+.  ..|+|++|
T Consensus       425 l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N  504 (635)
T 4g8a_A          425 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  504 (635)
T ss_dssp             EECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             hhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC
Confidence            6665555443332 344555555666666666555555555555566666666554322 2333322222  44556666


Q ss_pred             ccccchhhhhccCCCCCEEecccCcCccccchhccCCCCCCeeeCcCCcccccCCC
Q 003296          396 LFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPK  451 (833)
Q Consensus       396 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~  451 (833)
                      ++++..|..|.++++|++|+|++|+|++..|..|..+++|+.|++++|+|++..|.
T Consensus       505 ~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~  560 (635)
T 4g8a_A          505 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ  560 (635)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred             ccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence            66555555566666666666666666555555555566666666666666555543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.5e-44  Score=420.07  Aligned_cols=436  Identities=21%  Similarity=0.241  Sum_probs=333.1

Q ss_pred             CCCCCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCE
Q 003296            3 SCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEE   82 (833)
Q Consensus         3 ~~~~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~   82 (833)
                      .|..+...+.+++++|.++++|. .-.++|++|||++|+|+++.+.+|.++++|++|+|++|+|+++.|..|.++++|++
T Consensus        26 ~~~~~~~~~~l~ls~~~L~~ip~-~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  104 (562)
T 3a79_B           26 TPFSNELESMVDYSNRNLTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY  104 (562)
T ss_dssp             -------CCEEECTTSCCCSCCT-TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             cccccCCCcEEEcCCCCCccCCC-CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence            34556667999999999999985 22489999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCcCcccCCccccCCCCCCEEeccCCcCCcc-CCccccCCCCCcEEECcCCcCCCCCCcccccCCcc--Ccccccc
Q 003296           83 LVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGS-VPDRIGELSKLEVLILSANNLDGRLPTSLASITTL--SRFAANQ  159 (833)
Q Consensus        83 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L--~~l~l~~  159 (833)
                      |+|++|.|+. +|..  .+++|++|+|++|++++. .|..|+++++|++|+|++|.+++.   .+..+++|  +.|+++.
T Consensus       105 L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~  178 (562)
T 3a79_B          105 LDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL  178 (562)
T ss_dssp             EECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred             EECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence            9999999995 5555  899999999999999974 468999999999999999999874   45555555  9999999


Q ss_pred             ccc--cccCChhhhh---cCCEEecccccccccCCc-cCCCCCCCCEEeccccc--------------------------
Q 003296          160 NKF--SGSVPGGITR---FLRNLDLSYNKLLGVIPI-DLLSHPNLQTIDLSVNM--------------------------  207 (833)
Q Consensus       160 n~l--~~~~p~~~~~---~L~~L~Ls~N~l~~~~~~-~~~~~~~L~~L~Ls~N~--------------------------  207 (833)
                      |.+  ++..|..+..   ..-.+++++|.+.+.++. .+..+++|+.|++++|.                          
T Consensus       179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~  258 (562)
T 3a79_B          179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH  258 (562)
T ss_dssp             SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred             ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence            999  7777765522   111456667766654433 23445566666666653                          


Q ss_pred             --Cccc-----CCCCCCcCCcEEEcCCccccCCCCcccc----CCCCCCCEEECCCCCCCCCCC-ccccC---CCCCcEE
Q 003296          208 --LEGS-----LPQNMSPNLVRLRLGTNLLIGEIPSATF----TSLEKLTYLELDNNSFTGMIP-QQLGS---CRSLTLL  272 (833)
Q Consensus       208 --l~~~-----~p~~~~~~L~~L~l~~n~l~~~~~~~~f----~~l~~L~~L~L~~N~l~~~~~-~~~~~---l~~L~~L  272 (833)
                        +.+.     .+....++|++|++++|.+.+.+|...|    ..++.|+.++++.|.+  .+| ..+..   ..+|+.|
T Consensus       259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L  336 (562)
T 3a79_B          259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKML  336 (562)
T ss_dssp             EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEE
T ss_pred             CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEE
Confidence              2211     1111123677778877777766665543    4555555666666665  223 22222   2568888


Q ss_pred             EccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCccc--CccccccCCCCCEEEccCCc
Q 003296          273 NLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGS--IPSFLSNLTNLVNLNLRQNN  350 (833)
Q Consensus       273 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~  350 (833)
                      ++++|.+....  ....+++|+.|++++|.+++..|..|..+++|++|++++|++++.  +|..|..+++|+.|+|++|+
T Consensus       337 ~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~  414 (562)
T 3a79_B          337 SISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS  414 (562)
T ss_dssp             EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred             EccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence            88888875322  126788999999999999998899999999999999999999873  35678899999999999999


Q ss_pred             cccccC-ccccCCCCCCEEEccCCcCCccCCCCcccccceeeccccccccchhhhhccCCCCCEEecccCcCccccchhc
Q 003296          351 LNGSIP-NSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLL  429 (833)
Q Consensus       351 l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  429 (833)
                      +++.+| ..+..+++|++|++++|++++.+|...+...+.|++++|+++ .+|..+..+++|+.|++++|+|++..+..+
T Consensus       415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~  493 (562)
T 3a79_B          415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVF  493 (562)
T ss_dssp             CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTST
T ss_pred             CCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHH
Confidence            988454 458889999999999999988777655444568999999998 566666699999999999999996555558


Q ss_pred             cCCCCCCeeeCcCCcccccCC
Q 003296          430 AQMPTLTQLLLTNNQLSGVVP  450 (833)
Q Consensus       430 ~~l~~L~~L~ls~N~l~~~~p  450 (833)
                      ..+++|+.|++++|++.|..|
T Consensus       494 ~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          494 DRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TTCTTCCCEECCSCCBCCCHH
T ss_pred             hcCCCCCEEEecCCCcCCCcc
Confidence            899999999999999987654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.3e-44  Score=425.18  Aligned_cols=407  Identities=18%  Similarity=0.294  Sum_probs=266.6

Q ss_pred             CCCCEEECCCCCCCC-cc-cccCCCCCCEEECCCCCCC------C---------------------------ccccccc-
Q 003296            8 DGLKLLNFSKNELVS-LP-TFNGFAGLEVLDFSSNNLN------G---------------------------NINLQFD-   51 (833)
Q Consensus         8 ~~L~~L~ls~N~l~~-i~-~f~~l~~L~~L~Ls~N~l~------~---------------------------~~~~~f~-   51 (833)
                      ..++.|+|++|.+.+ +| +|..+++|++|||++|++.      +                           ..+..+. 
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            578899999999987 54 6899999999999999651      1                           0000000 


Q ss_pred             ------------------CCCCCCEEeCc--CCcCCCCCCcccCCCCCCCEEEccCCcCccc-----------------C
Q 003296           52 ------------------ELVSLKSLNLS--KNKFNGFLPINLGKTKALEELVLSGNAFHGE-----------------I   94 (833)
Q Consensus        52 ------------------~l~~L~~L~Ls--~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----------------~   94 (833)
                                        ....++.+.+.  +|++++ +|..|+++++|++|+|++|.+++.                 +
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i  239 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK  239 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence                              11122222222  456666 566666677777777777776664                 6


Q ss_pred             Ccccc--CCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCc-CCC-CCCcccccC------CccCccccccccccc
Q 003296           95 PKGIA--DYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANN-LDG-RLPTSLASI------TTLSRFAANQNKFSG  164 (833)
Q Consensus        95 p~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~p~~~~~l------~~L~~l~l~~n~l~~  164 (833)
                      |..++  ++++|++|+|++|++.+.+|..|+++++|++|+|++|+ +++ .+|..++.+      ++|+.|++++|+++ 
T Consensus       240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-  318 (636)
T 4eco_A          240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-  318 (636)
T ss_dssp             TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred             chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence            66666  67777777777777666666667777777777777776 666 666666655      66777777777766 


Q ss_pred             cCCh--hh--hhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCC--cC-CcEEEcCCccccCCCCcc
Q 003296          165 SVPG--GI--TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS--PN-LVRLRLGTNLLIGEIPSA  237 (833)
Q Consensus       165 ~~p~--~~--~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~--~~-L~~L~l~~n~l~~~~~~~  237 (833)
                      .+|.  .+  ++.|+.|+|++|++.|.+| .+..+++|++|+|++|.++ .+|..+.  ++ |+.|++++|.+. .+|. 
T Consensus       319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~-  394 (636)
T 4eco_A          319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN-  394 (636)
T ss_dssp             SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS-
T ss_pred             ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch-
Confidence            5555  44  3456777777777766666 6666667777777777766 5555554  44 777777777655 3443 


Q ss_pred             ccCCC--CCCCEEECCCCCCCCCCCcccc-------CCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCc
Q 003296          238 TFTSL--EKLTYLELDNNSFTGMIPQQLG-------SCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIP  308 (833)
Q Consensus       238 ~f~~l--~~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  308 (833)
                      .|..+  ++|++|++++|++++..|..+.       .+++|+.|+|++|.+....+..+..+++|+.|+|++|+++...+
T Consensus       395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~  474 (636)
T 4eco_A          395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK  474 (636)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCS
T ss_pred             hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCH
Confidence            34433  3677777777777777776666       66677777777777774444445567777777777777774333


Q ss_pred             hhhcCCC-------cCceeeccCCcCcccCccccc--cCCCCCEEEccCCccccccCccccCCCCCCEEEc------cCC
Q 003296          309 SQFSQLK-------LLSTMNISWNSLSGSIPSFLS--NLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQL------GGN  373 (833)
Q Consensus       309 ~~~~~l~-------~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L------~~N  373 (833)
                      ..+....       +|++|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+|      ++|
T Consensus       475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N  552 (636)
T 4eco_A          475 NSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGN  552 (636)
T ss_dssp             SSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCC
T ss_pred             HHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccC
Confidence            3333332       6777777777777 5566655  67777777777777776 6777777777777777      446


Q ss_pred             cCCccCCCCccccc--ceeeccccccccchhhhhccCCCCCEEecccCcCcccc
Q 003296          374 QLSGTIPMMPPRLQ--IALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEI  425 (833)
Q Consensus       374 ~l~~~~p~~~~~~~--~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  425 (833)
                      ++.+.+|.....+.  +.|+|++|.+ +.+|..+.  ++|+.||+++|++....
T Consensus       553 ~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          553 RTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred             cccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence            66666666555443  5677777777 56666655  68999999999876543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.4e-44  Score=431.30  Aligned_cols=406  Identities=20%  Similarity=0.316  Sum_probs=341.8

Q ss_pred             CCCCEEECCCCCCCC-cc-cccCCCCCCEEEC-CCCCCCCc---------------------------------------
Q 003296            8 DGLKLLNFSKNELVS-LP-TFNGFAGLEVLDF-SSNNLNGN---------------------------------------   45 (833)
Q Consensus         8 ~~L~~L~ls~N~l~~-i~-~f~~l~~L~~L~L-s~N~l~~~---------------------------------------   45 (833)
                      ..++.|+|++|.|.+ +| +|..+++|++||| ++|.++|.                                       
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            578899999999997 65 6999999999999 77754332                                       


Q ss_pred             -------------------------------------ccccccCCCCCCEEeCcCCcCCC-----------------CCC
Q 003296           46 -------------------------------------INLQFDELVSLKSLNLSKNKFNG-----------------FLP   71 (833)
Q Consensus        46 -------------------------------------~~~~f~~l~~L~~L~Ls~N~l~~-----------------~~p   71 (833)
                                                           +|..|+++++|++|+|++|+|++                 .+|
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP  482 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN  482 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence                                                 67789999999999999999998                 378


Q ss_pred             cccC--CCCCCCEEEccCCcCcccCCccccCCCCCCEEeccCCc-CCc-cCCccccCCC-------CCcEEECcCCcCCC
Q 003296           72 INLG--KTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANN-LSG-SVPDRIGELS-------KLEVLILSANNLDG  140 (833)
Q Consensus        72 ~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~-~~~~~~~~l~-------~L~~L~Ls~N~l~~  140 (833)
                      ..++  ++++|++|+|++|.+.+.+|..|+++++|+.|+|++|+ +++ .+|..|+.++       +|++|+|++|.++ 
T Consensus       483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-  561 (876)
T 4ecn_A          483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-  561 (876)
T ss_dssp             SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-
T ss_pred             hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-
Confidence            8887  99999999999999999999999999999999999998 998 7888776665       9999999999999 


Q ss_pred             CCCc--ccccCCccCccccccccccccCChhh--hhcCCEEecccccccccCCccCCCCCC-CCEEecccccCcccCCCC
Q 003296          141 RLPT--SLASITTLSRFAANQNKFSGSVPGGI--TRFLRNLDLSYNKLLGVIPIDLLSHPN-LQTIDLSVNMLEGSLPQN  215 (833)
Q Consensus       141 ~~p~--~~~~l~~L~~l~l~~n~l~~~~p~~~--~~~L~~L~Ls~N~l~~~~~~~~~~~~~-L~~L~Ls~N~l~~~~p~~  215 (833)
                      .+|.  .|.++++|+.|++++|+++ .+| .+  ++.|+.|+|++|++. .+|..+..+++ |+.|+|++|.++ .+|..
T Consensus       562 ~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~  637 (876)
T 4ecn_A          562 EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNI  637 (876)
T ss_dssp             BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSC
T ss_pred             ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchh
Confidence            7888  9999999999999999999 777 44  567999999999999 78888999999 999999999999 67766


Q ss_pred             CC----cCCcEEEcCCccccCCCCcc--ccC--CCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhh
Q 003296          216 MS----PNLVRLRLGTNLLIGEIPSA--TFT--SLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQL  287 (833)
Q Consensus       216 ~~----~~L~~L~l~~n~l~~~~~~~--~f~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~  287 (833)
                      +.    ++|+.|++++|.+.+.+|..  .+.  .+++|+.|+|++|+++...+..+..+++|+.|+|++|++. .+|..+
T Consensus       638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~  716 (876)
T 4ecn_A          638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENS  716 (876)
T ss_dssp             CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred             hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHH
Confidence            54    34999999999998755421  122  3458999999999999655555668999999999999999 555544


Q ss_pred             CC--------CCCCcEEEccCCcCCCcCchhhc--CCCcCceeeccCCcCcccCccccccCCCCCEEEccC------Ccc
Q 003296          288 GS--------LGILQVMNLQLNKLSGEIPSQFS--QLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQ------NNL  351 (833)
Q Consensus       288 ~~--------l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~------N~l  351 (833)
                      ..        +++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+|++      |++
T Consensus       717 ~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l  794 (876)
T 4ecn_A          717 LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRI  794 (876)
T ss_dssp             SSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred             hccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccc
Confidence            33        238999999999999 6777776  89999999999999998 788999999999999976      888


Q ss_pred             ccccCccccCCCCCCEEEccCCcCCccCCCCcccccceeeccccccccchhhhhccCCCCCEEecccCcCccccchhccC
Q 003296          352 NGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQ  431 (833)
Q Consensus       352 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  431 (833)
                      .+.+|..|.++++|+.|+|++|++ +.+|...                      .  ++|+.|||++|++....+..+..
T Consensus       795 ~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l----------------------~--~~L~~LdLs~N~l~~i~~~~~~~  849 (876)
T 4ecn_A          795 LRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL----------------------T--PQLYILDIADNPNISIDVTSVCP  849 (876)
T ss_dssp             CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC----------------------C--SSSCEEECCSCTTCEEECGGGHH
T ss_pred             cccChHHHhcCCCCCEEECCCCCC-CccCHhh----------------------c--CCCCEEECCCCCCCccChHHccc
Confidence            889999999999999999999998 5665432                      1  36777777777776666666655


Q ss_pred             CCCCCeeeCcCCccc
Q 003296          432 MPTLTQLLLTNNQLS  446 (833)
Q Consensus       432 l~~L~~L~ls~N~l~  446 (833)
                      ...+..+.|.+|++.
T Consensus       850 ~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          850 YIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             HHHTTCCEEECCTTS
T ss_pred             cccchheeecCCCcc
Confidence            555556666666554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.9e-44  Score=418.65  Aligned_cols=440  Identities=18%  Similarity=0.211  Sum_probs=366.4

Q ss_pred             CCCCCCCCCEEECCCCCCCCcc--cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCC-CCcccCCCCC
Q 003296            3 SCGGIDGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGF-LPINLGKTKA   79 (833)
Q Consensus         3 ~~~~l~~L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~   79 (833)
                      +++++++|++|++++|.+++++  +|..+++|++|||++|+++++.+..|+++++|++|+|++|.+++. .|..|+.+++
T Consensus        45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~  124 (549)
T 2z81_A           45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN  124 (549)
T ss_dssp             TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred             hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence            4688999999999999999974  599999999999999999999998899999999999999999974 4678999999


Q ss_pred             CCEEEccCCc-CcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccc
Q 003296           80 LEELVLSGNA-FHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAAN  158 (833)
Q Consensus        80 L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~  158 (833)
                      |++|+|++|. +....+..|.++++|++|+|++|++++..|..|+.+++|++|++++|.+....+..+..+++|+.|+++
T Consensus       125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~  204 (549)
T 2z81_A          125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR  204 (549)
T ss_dssp             CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEE
T ss_pred             ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEcc
Confidence            9999999999 554555789999999999999999999999999999999999999999875444445679999999999


Q ss_pred             cccccccC--Ch---hhhhcCCEEecccccccccCCc----cCCCCCCCCEEecccccCcccCCC--------CCCcCCc
Q 003296          159 QNKFSGSV--PG---GITRFLRNLDLSYNKLLGVIPI----DLLSHPNLQTIDLSVNMLEGSLPQ--------NMSPNLV  221 (833)
Q Consensus       159 ~n~l~~~~--p~---~~~~~L~~L~Ls~N~l~~~~~~----~~~~~~~L~~L~Ls~N~l~~~~p~--------~~~~~L~  221 (833)
                      +|++++..  |.   .....|+.|++++|++.+..+.    .+..+++|+.+++++|.+.+....        ...++++
T Consensus       205 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~  284 (549)
T 2z81_A          205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE  284 (549)
T ss_dssp             SCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCC
T ss_pred             CCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccc
Confidence            99998742  11   2356799999999998765443    345678999999999998764211        1126889


Q ss_pred             EEEcCCccccCCCC----ccccCCCCCCCEEECCCCCCCCCCCccc-cCCCCCcEEEccCCccCCCChh---hhCCCCCC
Q 003296          222 RLRLGTNLLIGEIP----SATFTSLEKLTYLELDNNSFTGMIPQQL-GSCRSLTLLNLAQNELNGSLPI---QLGSLGIL  293 (833)
Q Consensus       222 ~L~l~~n~l~~~~~----~~~f~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L  293 (833)
                      .|.+.++.+.....    +..+...++|+.|++++|.+.. +|..+ ..+++|++|+|++|++.+..|.   .++.+++|
T Consensus       285 ~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L  363 (549)
T 2z81_A          285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL  363 (549)
T ss_dssp             EEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTC
T ss_pred             cccccccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccC
Confidence            99998886432110    1112335789999999999984 45544 6899999999999999987654   37889999


Q ss_pred             cEEEccCCcCCCcCc--hhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEcc
Q 003296          294 QVMNLQLNKLSGEIP--SQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLG  371 (833)
Q Consensus       294 ~~L~L~~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  371 (833)
                      +.|++++|++++..+  ..+..+++|++|++++|+++ .+|..+..+++|++|+|++|+++. +|..+  .++|++|+|+
T Consensus       364 ~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls  439 (549)
T 2z81_A          364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVS  439 (549)
T ss_dssp             CEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECC
T ss_pred             cEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECC
Confidence            999999999997643  56889999999999999999 678889999999999999999984 44333  2689999999


Q ss_pred             CCcCCccCCCCcccccceeeccccccccchhhhhccCCCCCEEecccCcCccccchhccCCCCCCeeeCcCCcccccCCC
Q 003296          372 GNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPK  451 (833)
Q Consensus       372 ~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~  451 (833)
                      +|++++.++. . ...+.|++++|+++ .+|. ...+++|++||+++|++++.+|..+..+++|+.|++++|++.|..|.
T Consensus       440 ~N~l~~~~~~-l-~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          440 NNNLDSFSLF-L-PRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             SSCCSCCCCC-C-TTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred             CCChhhhccc-C-ChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence            9999976432 2 22367999999998 5665 46789999999999999999999999999999999999999988773

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=6.2e-45  Score=387.19  Aligned_cols=250  Identities=22%  Similarity=0.311  Sum_probs=208.6

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +.|...+.||+|+||.||+|.. .+|+.||||++...    .....+.+.+|+.++++++|||||+++++|..++..++|
T Consensus        20 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~----~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   95 (297)
T 3fxz_A           20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQ----QQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVV   95 (297)
T ss_dssp             GTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGG----GCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecc----cccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEE
Confidence            4688899999999999999996 58999999998422    233457799999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++...   .+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus        96 ~e~~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  169 (297)
T 3fxz_A           96 MEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE  169 (297)
T ss_dssp             EECCTTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCST
T ss_pred             EECCCCCCHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCc
Confidence            9999999999999853   5899999999999999999999   789999999999999999999999999999877544


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      ..  .....+||+.|+|||++.+..++.++|||||||++|||+||+.||.+..................        .  
T Consensus       170 ~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~--------~--  237 (297)
T 3fxz_A          170 QS--KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPEL--------Q--  237 (297)
T ss_dssp             TC--CBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCC--------S--
T ss_pred             cc--ccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCC--------C--
Confidence            32  23457899999999999999999999999999999999999999986554333222211110000        0  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        .....+..+.+++.+||+.||++|||++|++++
T Consensus       238 --~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h  270 (297)
T 3fxz_A          238 --NPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQH  270 (297)
T ss_dssp             --CGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             --CccccCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence              011234567899999999999999999999875

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=8.3e-45  Score=398.21  Aligned_cols=258  Identities=19%  Similarity=0.242  Sum_probs=209.1

Q ss_pred             HhcCCccccccCcccEEEEEEc--------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEe
Q 003296          555 AVANPLNVELKTRFSTYYKAVM--------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVL  625 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~--------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~  625 (833)
                      ++|+..+.||+|+||.||+|..        .++..||||+++...   .....+.|.+|+++++++ +|||||+++++|.
T Consensus        81 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~  157 (370)
T 2psq_A           81 DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA---TEKDLSDLVSEMEMMKMIGKHKNIINLLGACT  157 (370)
T ss_dssp             GGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTC---BHHHHHHHHHHHHHHHHSCCCTTBCCEEEEEC
T ss_pred             HHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCc---CHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEc
Confidence            4677889999999999999985        245679999995321   122356799999999999 8999999999999


Q ss_pred             cCCceEEEEeeCCCCChhhhhhcCC--------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccce
Q 003296          626 ASDSAYLFYEYAPKGTLFDVLHGCL--------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNI  691 (833)
Q Consensus       626 ~~~~~~lv~ey~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Ni  691 (833)
                      .++..|+||||+++|+|.+++....              ...++|.++..++.|+++||+|||   +.+|+||||||+||
T Consensus       158 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NI  234 (370)
T 2psq_A          158 QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNV  234 (370)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGE
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeccccchhhE
Confidence            9999999999999999999998643              135899999999999999999999   78999999999999


Q ss_pred             eeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHH
Q 003296          692 FLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAK  770 (833)
Q Consensus       692 ll~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~  770 (833)
                      |++.++.+||+|||+++...............||+.|+|||++.+..++.++|||||||++|||+| |+.||.+.... +
T Consensus       235 ll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~-~  313 (370)
T 2psq_A          235 LVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVE-E  313 (370)
T ss_dssp             EECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG-G
T ss_pred             EECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHH-H
Confidence            999999999999999987654433223345678899999999999899999999999999999999 99999754322 1


Q ss_pred             HHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          771 WVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ..... ......      ...      ...+.++.+++.+||+.||++|||+.|++++|+++
T Consensus       314 ~~~~~-~~~~~~------~~~------~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~i  362 (370)
T 2psq_A          314 LFKLL-KEGHRM------DKP------ANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI  362 (370)
T ss_dssp             HHHHH-HTTCCC------CCC------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHH-hcCCCC------CCC------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            11111 110100      011      12234678999999999999999999999999875

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=8.8e-45  Score=390.91  Aligned_cols=259  Identities=22%  Similarity=0.287  Sum_probs=205.6

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc----e
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS----A  630 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~----~  630 (833)
                      ..|+..+.||+|+||.||+|+.. |+.||||++....     .....+.+|+.++++++|||||++++++.....    .
T Consensus        24 ~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~   97 (322)
T 3soc_A           24 MPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQD-----KQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDL   97 (322)
T ss_dssp             EEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGG-----HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEE
T ss_pred             hhchhhheecccCceEEEEEEEC-CCEEEEEEeecCc-----hHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceE
Confidence            45778899999999999999874 8999999994221     123456779999999999999999999987543    6


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCC----------CeeecCCCccceeeCCCCCce
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSN----------PILLLDLSTRNIFLKSLKEPQ  700 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~----------~iiHrdlk~~Nill~~~~~~k  700 (833)
                      ++|||||++|+|.++++.   ..++|..+..++.|+++||+|||   +.          +|+||||||+|||++.++.+|
T Consensus        98 ~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~qi~~al~~LH---~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~k  171 (322)
T 3soc_A           98 WLITAFHEKGSLSDFLKA---NVVSWNELCHIAETMARGLAYLH---EDIPGLKDGHKPAISHRDIKSKNVLLKNNLTAC  171 (322)
T ss_dssp             EEEEECCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHT---CCEEEETTEEECEEECSCCSGGGEEECTTCCEE
T ss_pred             EEEEecCCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHH---hhccccccccCCCEEeCCCChHhEEECCCCeEE
Confidence            999999999999999985   35999999999999999999999   66          999999999999999999999


Q ss_pred             eccceeeeeeCCCCCCCccccccccccccccccccC-----CcccccCcchhhHHHHHHHHhCCCcccCCcc--------
Q 003296          701 IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT-----MRVTMAGNVYSFGVILLELLTGKTAVNQGNE--------  767 (833)
Q Consensus       701 i~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~--------  767 (833)
                      |+|||+++...............||+.|+|||++.+     ..++.++|||||||++|||+||+.||.+...        
T Consensus       172 L~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~  251 (322)
T 3soc_A          172 IADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEE  251 (322)
T ss_dssp             ECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHH
T ss_pred             EccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhh
Confidence            999999988765443333345789999999999876     4577899999999999999999999974321        


Q ss_pred             -------HHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          768 -------LAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       768 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                             ...+.......  .    ..+.... .......+.++.+++.+||+.||++|||++||+++|+++
T Consensus       252 ~~~~~~~~~~~~~~~~~~--~----~~~~~~~-~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l  316 (322)
T 3soc_A          252 EIGQHPSLEDMQEVVVHK--K----KRPVLRD-YWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQM  316 (322)
T ss_dssp             HHCSSCCHHHHHHHHTTS--C----CCCCCCG-GGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             hhccCCchhhhhhhhhcc--c----CCCCccc-cccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence                   11111111000  0    0111111 011123456789999999999999999999999999876

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=4.7e-44  Score=382.84  Aligned_cols=278  Identities=26%  Similarity=0.422  Sum_probs=221.7

Q ss_pred             hhHHHHHHHhcCCc------cccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccc
Q 003296          547 IDFTKAMEAVANPL------NVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTP  620 (833)
Q Consensus       547 ~~~~~~~~~~~~~~------~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~  620 (833)
                      .++. .++..|+..      +.||+|+||.||+|.. +++.||||++............+.|.+|++++++++||||+++
T Consensus        18 ~~l~-~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~   95 (307)
T 2nru_A           18 YELK-NVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVEL   95 (307)
T ss_dssp             HHHH-HHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             HHHH-HHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence            4454 777888776      8899999999999987 6899999998533222222335689999999999999999999


Q ss_pred             eEEEecCCceEEEEeeCCCCChhhhhhcCC-CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCc
Q 003296          621 LAYVLASDSAYLFYEYAPKGTLFDVLHGCL-ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEP  699 (833)
Q Consensus       621 ~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~  699 (833)
                      ++++...+..++||||+++|+|.+++.... ...++|..+..++.|+++||+|||   +.+|+||||||+||+++.++.+
T Consensus        96 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~  172 (307)
T 2nru_A           96 LGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAFTA  172 (307)
T ss_dssp             EEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCE
T ss_pred             EEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecCCCCHHHEEEcCCCcE
Confidence            999999999999999999999999997432 346999999999999999999999   7899999999999999999999


Q ss_pred             eeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc---HHHHHHHhh
Q 003296          700 QIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE---LAKWVLRNS  776 (833)
Q Consensus       700 ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~---~~~~~~~~~  776 (833)
                      |++|||+++...............||+.|+|||++.+ .++.++|||||||++|||++|+.||.....   ...+.....
T Consensus       173 kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~  251 (307)
T 2nru_A          173 KISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIE  251 (307)
T ss_dssp             EECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHHHHHH
T ss_pred             EEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHHHHhh
Confidence            9999999987654332222344679999999998764 589999999999999999999999975332   222222222


Q ss_pred             cccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296          777 AQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR  833 (833)
Q Consensus       777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r  833 (833)
                      .....+...++......   ....+..+.+++.+||+.||++|||++||+++|++++
T Consensus       252 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~  305 (307)
T 2nru_A          252 DEEKTIEDYIDKKMNDA---DSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMT  305 (307)
T ss_dssp             TTSCCHHHHSCSSCSCC---CHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC
T ss_pred             hhhhhhhhhcccccccc---chHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHh
Confidence            22222333333333222   2345678889999999999999999999999999874

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=3.2e-44  Score=387.38  Aligned_cols=251  Identities=19%  Similarity=0.216  Sum_probs=208.0

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||.||+|+.. +|+.||||+++ +.........+.+.+|++++++++|||||++++++...+..|+|
T Consensus         5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~-~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv   83 (337)
T 1o6l_A            5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILR-KEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEE-HHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEe-HHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence            46888899999999999999974 79999999994 32222344567899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++..  ...+++.++..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||+++.....
T Consensus        84 ~E~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~  158 (337)
T 1o6l_A           84 MEYANGGELFFHLSR--ERVFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISD  158 (337)
T ss_dssp             EECCTTCBHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCT
T ss_pred             EeCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCCHHHEEECCCCCEEEeeccchhhcccC
Confidence            999999999999976  346899999999999999999999   789999999999999999999999999999864322


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      ..  .....+||+.|||||++.+..++.++||||+||++|||++|+.||.+.... ...........        .++. 
T Consensus       159 ~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~-~~~~~i~~~~~--------~~p~-  226 (337)
T 1o6l_A          159 GA--TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE-RLFELILMEEI--------RFPR-  226 (337)
T ss_dssp             TC--CBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHCCC--------CCCT-
T ss_pred             CC--cccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHH-HHHHHHHcCCC--------CCCC-
Confidence            21  235678999999999999999999999999999999999999999754432 22211111100        0111 


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARP-----KMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~  828 (833)
                           ..+.++.+++.+||+.||++||     +++||++|
T Consensus       227 -----~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h  261 (337)
T 1o6l_A          227 -----TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH  261 (337)
T ss_dssp             -----TSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred             -----CCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcC
Confidence                 1234678999999999999999     89999875

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=1.2e-44  Score=394.25  Aligned_cols=256  Identities=18%  Similarity=0.224  Sum_probs=209.0

Q ss_pred             HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhh--ccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQ--LGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      .+.|+..+.||+|+||.||+|... +|+.||||++........  ....+.+.+|++++++++|||||+++++|.+++..
T Consensus        11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~   90 (361)
T 2yab_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV   90 (361)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred             hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence            456888899999999999999974 799999999953322111  12357899999999999999999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC----Cceecccee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK----EPQIGDIEL  706 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~----~~ki~dfgl  706 (833)
                      |+||||+++|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+||+++.++    .+||+|||+
T Consensus        91 ~lv~e~~~gg~L~~~l~~--~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~  165 (361)
T 2yab_A           91 VLILELVSGGELFDFLAQ--KESLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGL  165 (361)
T ss_dssp             EEEEECCCSCBHHHHHTT--CSCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCSS
T ss_pred             EEEEEcCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEeCCCCCccCEEEEecCC
Confidence            999999999999999975  456999999999999999999999   78999999999999998776    799999999


Q ss_pred             eeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc
Q 003296          707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL  786 (833)
Q Consensus       707 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  786 (833)
                      ++......   .....+||+.|+|||++.+..|+.++||||+||++|||++|+.||.+...... .......        
T Consensus       166 a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~~-~~~i~~~--------  233 (361)
T 2yab_A          166 AHEIEDGV---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQET-LANITAV--------  233 (361)
T ss_dssp             CEECCTTC---CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHH-HHHHHTT--------
T ss_pred             ceEcCCCC---ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHhc--------
Confidence            98875433   22457899999999999988999999999999999999999999976543222 1111111        


Q ss_pred             cccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          787 DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       787 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        ........+...+.++.+++.+||+.||++|||+.|+++|
T Consensus       234 --~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~h  273 (361)
T 2yab_A          234 --SYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALRH  273 (361)
T ss_dssp             --CCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             --CCCCCchhccCCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence              0001111122334578899999999999999999999864

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=1.3e-44  Score=389.40  Aligned_cols=249  Identities=19%  Similarity=0.253  Sum_probs=205.4

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      .+|...+.||+|+||.||+|.. .+|+.||||++....  ......+.+.+|++++++++|||||++++++..++..|+|
T Consensus        15 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv   92 (328)
T 3fe3_A           15 GNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQ--LNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLI   92 (328)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGG--SCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhc--CCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEE
Confidence            3577889999999999999997 689999999994321  1122346789999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||||++|+|.+++..  ...+++.++..++.|+++||+|||   +.+|+||||||+|||++.++.+||+|||+++.....
T Consensus        93 ~e~~~~~~L~~~l~~--~~~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~  167 (328)
T 3fe3_A           93 MEYASGGEVFDYLVA--HGRMKEKEARSKFRQIVSAVQYCH---QKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVG  167 (328)
T ss_dssp             ECCCTTCBHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSS
T ss_pred             EECCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCC
Confidence            999999999999976  346899999999999999999999   789999999999999999999999999999866433


Q ss_pred             CCCCccccccccccccccccccCCccc-ccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVT-MAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      .   .....+||+.|+|||++.+..++ .++||||+||++|||++|+.||.+... .............        .+.
T Consensus       168 ~---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-~~~~~~i~~~~~~--------~p~  235 (328)
T 3fe3_A          168 G---KLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNL-KELRERVLRGKYR--------IPF  235 (328)
T ss_dssp             C---GGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHCCCC--------CCT
T ss_pred             C---ccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCH-HHHHHHHHhCCCC--------CCC
Confidence            2   33567899999999999887775 899999999999999999999975442 2222211111110        000


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                            ..+.++.+++.+||+.||++|||++|+++|
T Consensus       236 ------~~s~~~~~li~~~L~~dP~~R~t~~eil~h  265 (328)
T 3fe3_A          236 ------YMSTDCENLLKRFLVLNPIKRGTLEQIMKD  265 (328)
T ss_dssp             ------TSCHHHHHHHHHHCCSSTTTSCCHHHHTTC
T ss_pred             ------CCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence                  123467899999999999999999999875

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=1.3e-44  Score=386.63  Aligned_cols=258  Identities=23%  Similarity=0.305  Sum_probs=199.9

Q ss_pred             HHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ..+|+..+.||+|+||.||+|+. +|+.||||++.....  .....++|.+|++++++++|||||++++++...+..++|
T Consensus        36 ~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  112 (309)
T 3p86_A           36 WCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDF--HAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIV  112 (309)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCC--SHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEE
T ss_pred             hhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCC--CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEE
Confidence            35677889999999999999987 689999999853221  122346799999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCC-CCCCHHHHHHHHHHHHHHHHhhhcCCCCC--eeecCCCccceeeCCCCCceeccceeeeee
Q 003296          634 YEYAPKGTLFDVLHGCLE-NALDWASRYSIAVGVAQGLAFLHGFTSNP--ILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      |||+++|+|.++++.... ..+++..+..++.|+++||+|||   +.+  |+||||||+||+++.++.+||+|||+++..
T Consensus       113 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~  189 (309)
T 3p86_A          113 TEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLH---NRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLK  189 (309)
T ss_dssp             EECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHH---TSSSCCCCTTCCGGGEEECTTCCEEECCCC-----
T ss_pred             EecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH---cCCCCEECCCCChhhEEEeCCCcEEECCCCCCccc
Confidence            999999999999986321 24899999999999999999999   667  999999999999999999999999999865


Q ss_pred             CCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296          711 DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                      .....  ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+...... ...........      ..
T Consensus       190 ~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~-~~~~~~~~~~~------~~  260 (309)
T 3p86_A          190 ASTFL--SSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQV-VAAVGFKCKRL------EI  260 (309)
T ss_dssp             --------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHH-HHHHHHSCCCC------CC
T ss_pred             ccccc--ccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHhcCCCC------CC
Confidence            43221  22456899999999999998999999999999999999999999975443222 11111110000      01


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .      ...+.++.+++.+||+.||++|||++|+++.|+.+
T Consensus       261 ~------~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~  296 (309)
T 3p86_A          261 P------RNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPL  296 (309)
T ss_dssp             C------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             C------ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence            1      12234678999999999999999999999999864

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=9.6e-45  Score=388.72  Aligned_cols=259  Identities=23%  Similarity=0.311  Sum_probs=206.7

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|...+.||+|+||.||+|.. .+|+.||+|++....    ....+.|.+|++++++++|||||++++++.+++..++|
T Consensus        10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~----~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   85 (310)
T 3s95_A           10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFD----EETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFI   85 (310)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCC----HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCC----HHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEE
Confidence            4577789999999999999997 479999999984322    22357899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.++++.. ...++|.++..++.|+++||+|||   +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus        86 ~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  161 (310)
T 3s95_A           86 TEYIKGGTLRGIIKSM-DSQYPWSQRVSFAKDIASGMAYLH---SMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDE  161 (310)
T ss_dssp             EECCTTCBHHHHHHHC-CTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEECTTSCEEECCCTTCEECC--
T ss_pred             EEecCCCcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCcCeEEECCCCCEEEeecccceecccc
Confidence            9999999999999864 346999999999999999999999   788999999999999999999999999999876433


Q ss_pred             CCCC------------ccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccc
Q 003296          714 KSTG------------SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDK  781 (833)
Q Consensus       714 ~~~~------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~  781 (833)
                      ....            .....+||+.|+|||++.+..++.++|||||||++|||++|..|+........      .....
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~------~~~~~  235 (310)
T 3s95_A          162 KTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTM------DFGLN  235 (310)
T ss_dssp             ------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCT------TSSBC
T ss_pred             cccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHH------HHhhh
Confidence            2110            11246799999999999999999999999999999999999999864221000      00000


Q ss_pred             ccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296          782 LDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR  833 (833)
Q Consensus       782 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r  833 (833)
                      .....+....      ...+.++.+++.+||+.||++|||+.|+++.|+++|
T Consensus       236 ~~~~~~~~~~------~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~  281 (310)
T 3s95_A          236 VRGFLDRYCP------PNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLR  281 (310)
T ss_dssp             HHHHHHHTCC------TTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             hhccccccCC------CCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence            0000000000      112346788999999999999999999999998763

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2e-44  Score=387.25  Aligned_cols=251  Identities=15%  Similarity=0.187  Sum_probs=207.3

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +.|...+.||+|+||.||+|+.. +|+.||+|.+....     .....+.+|++++++++|||||++++++.+.+..++|
T Consensus         5 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-----~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv   79 (321)
T 1tki_A            5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-----TDQVLVKKEISILNIARHRNILHLHESFESMEELVMI   79 (321)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-----HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEE
T ss_pred             hceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-----ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEE
Confidence            56788899999999999999974 78999999985321     1245789999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC--CCCceeccceeeeeeC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS--LKEPQIGDIELCKVID  711 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~--~~~~ki~dfgl~~~~~  711 (833)
                      ||||++|+|.+++... ...+++.++..++.|++.||+|||   +.+|+||||||+||+++.  ++.+||+|||+++...
T Consensus        80 ~e~~~g~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH---~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~  155 (321)
T 1tki_A           80 FEFISGLDIFERINTS-AFELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLK  155 (321)
T ss_dssp             ECCCCCCBHHHHHTSS-SCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECC
T ss_pred             EEeCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECC
Confidence            9999999999999753 346899999999999999999999   789999999999999987  7899999999998875


Q ss_pred             CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      ...   ......||+.|+|||++.+..++.++||||+||++|||++|+.||.+.... +........          ...
T Consensus       156 ~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~-~~~~~i~~~----------~~~  221 (321)
T 1tki_A          156 PGD---NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQ-QIIENIMNA----------EYT  221 (321)
T ss_dssp             TTC---EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHH-HHHHHHHHT----------CCC
T ss_pred             CCC---ccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHH-HHHHHHHcC----------CCC
Confidence            433   234568999999999999888999999999999999999999999764432 222111111          111


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .........+.++.+++.+||+.||++|||+.|+++|
T Consensus       222 ~~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~h  258 (321)
T 1tki_A          222 FDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQH  258 (321)
T ss_dssp             CCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             CChhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            1111122345678899999999999999999999985

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=4e-44  Score=386.20  Aligned_cols=257  Identities=19%  Similarity=0.230  Sum_probs=209.3

Q ss_pred             HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhh--ccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQ--LGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS  629 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~  629 (833)
                      ..+.|+..+.||+|+||.||+|... +|+.||||++........  ....+.+.+|++++++++|||||+++++|..++.
T Consensus         9 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~   88 (326)
T 2y0a_A            9 VDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTD   88 (326)
T ss_dssp             HHHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             cccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCE
Confidence            4467889999999999999999974 799999999953322111  1235789999999999999999999999999999


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC----Cceeccce
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK----EPQIGDIE  705 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~----~~ki~dfg  705 (833)
                      .++||||+++|+|.+++..  ...+++.++..++.|++.||+|||   +.+|+||||||+||+++.++    .+||+|||
T Consensus        89 ~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg  163 (326)
T 2y0a_A           89 VILILELVAGGELFDFLAE--KESLTEEEATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFG  163 (326)
T ss_dssp             EEEEEECCCSCBHHHHHTT--SSCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCSSSSSCCEEECCCT
T ss_pred             EEEEEEcCCCCCHHHHHHh--cCCcCHHHHHHHHHHHHHHHHHHH---HCCeEcCCCCHHHEEEecCCCCCCCEEEEECC
Confidence            9999999999999999975  456999999999999999999999   78999999999999999887    79999999


Q ss_pred             eeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccc
Q 003296          706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHI  785 (833)
Q Consensus       706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~  785 (833)
                      +++......   .....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+......... .......    
T Consensus       164 ~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~-~~~~~~~----  235 (326)
T 2y0a_A          164 LAHKIDFGN---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLAN-VSAVNYE----  235 (326)
T ss_dssp             TCEECCTTS---CCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHH-HHHTCCC----
T ss_pred             CCeECCCCC---ccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHH-HHhcCCC----
Confidence            998875433   22456899999999999988999999999999999999999999975443222111 1111000    


Q ss_pred             ccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          786 LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       786 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                            .........+..+.+++.+||+.||++|||+.|+++|
T Consensus       236 ------~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  272 (326)
T 2y0a_A          236 ------FEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH  272 (326)
T ss_dssp             ------CCHHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             ------cCccccccCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence                  0111112234567899999999999999999999975

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.8e-43  Score=405.75  Aligned_cols=405  Identities=23%  Similarity=0.259  Sum_probs=316.9

Q ss_pred             CCCCEEECCCCCCCCcc--cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296            8 DGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL   85 (833)
Q Consensus         8 ~~L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   85 (833)
                      ++|+.|++++|.+++++  .|..+++|++|+|++|+|+++.|..|.++++|++|+|++|+|+.+++ .  .+++|++|+|
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC-H--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEEC-C--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCc-c--ccCCccEEec
Confidence            68999999999999974  59999999999999999999999999999999999999999996544 4  8999999999


Q ss_pred             cCCcCcc-cCCccccCCCCCCEEeccCCcCCccCCccccCCCCC--cEEECcCCcC--CCCCCccccc------------
Q 003296           86 SGNAFHG-EIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKL--EVLILSANNL--DGRLPTSLAS------------  148 (833)
Q Consensus        86 ~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--~~L~Ls~N~l--~~~~p~~~~~------------  148 (833)
                      ++|.+++ ..|..|+++++|++|+|++|.|++   ..|..+++|  ++|+|++|.+  ++..|..+..            
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~  174 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT  174 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence            9999997 478999999999999999999986   567888888  9999999999  7777776665            


Q ss_pred             --------------CCccCcccccccc-------ccccCChhh--hhcCCEEecccccccccCCccCC---CCCCCCEEe
Q 003296          149 --------------ITTLSRFAANQNK-------FSGSVPGGI--TRFLRNLDLSYNKLLGVIPIDLL---SHPNLQTID  202 (833)
Q Consensus       149 --------------l~~L~~l~l~~n~-------l~~~~p~~~--~~~L~~L~Ls~N~l~~~~~~~~~---~~~~L~~L~  202 (833)
                                    +++|+.++++.|.       +.+.+| .+  ...|+.|++++|.+.+..+..+.   ..++|++|+
T Consensus       175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~  253 (520)
T 2z7x_B          175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS  253 (520)
T ss_dssp             SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred             Ccchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence                          6677888888876       555444 22  34588888888777653222111   135788888


Q ss_pred             cccccCcccCCCCC-----C--cCCcEEEcCCccccCCCCccccCCC---CCCCEEECCCCCCCCCCCccccCCCCCcEE
Q 003296          203 LSVNMLEGSLPQNM-----S--PNLVRLRLGTNLLIGEIPSATFTSL---EKLTYLELDNNSFTGMIPQQLGSCRSLTLL  272 (833)
Q Consensus       203 Ls~N~l~~~~p~~~-----~--~~L~~L~l~~n~l~~~~~~~~f~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  272 (833)
                      +++|.++|.+|..+     .  ++|+.++++.|.+  .+|...+..+   .+|+.|++++|.+....  .+..+++|++|
T Consensus       254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L  329 (520)
T 2z7x_B          254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHL  329 (520)
T ss_dssp             EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEE
T ss_pred             eecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEE
Confidence            88888887777765     2  5677778888776  4554333333   56888888888876542  12677888888


Q ss_pred             EccCCccCCCChhhhCCCCCCcEEEccCCcCCC--cCchhhcCCCcCceeeccCCcCcccCcc-ccccCCCCCEEEccCC
Q 003296          273 NLAQNELNGSLPIQLGSLGILQVMNLQLNKLSG--EIPSQFSQLKLLSTMNISWNSLSGSIPS-FLSNLTNLVNLNLRQN  349 (833)
Q Consensus       273 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N  349 (833)
                      ++++|++++..|..++.+++|+.|++++|++++  .+|..|..+++|++|++++|.+++.+|. .+..+++|+.|+|++|
T Consensus       330 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N  409 (520)
T 2z7x_B          330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN  409 (520)
T ss_dssp             ECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSS
T ss_pred             EeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCC
Confidence            888888888788888888888888888888886  4567788888888888888888874554 4777888888888888


Q ss_pred             ccccccCccccCCCCCCEEEccCCcCCccCCCCccccc--ceeeccccccccchhhhhccCCCCCEEecccCcCccccc
Q 003296          350 NLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQ--IALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIP  426 (833)
Q Consensus       350 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~--~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  426 (833)
                      ++++..|..+.  ++|+.|++++|+++ .+|.....+.  +.|++++|.+++..+..|..+++|+.|++++|.+++..+
T Consensus       410 ~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          410 ILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence            88777766554  68888888888887 4554333332  578888888885444458899999999999999987654

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=1.4e-43  Score=379.68  Aligned_cols=248  Identities=19%  Similarity=0.237  Sum_probs=207.4

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||.||+|+.. +|+.||||+++ +.........+.+.+|+.++++++|||||++++++.+.+..|+|
T Consensus         6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~-~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv   84 (318)
T 1fot_A            6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLK-KEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI   84 (318)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEE-HHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred             HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEE-HHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence            46788899999999999999974 79999999994 32223334567889999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||+++.....
T Consensus        85 ~e~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~  159 (318)
T 1fot_A           85 MDYIEGGELFSLLRK--SQRFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV  159 (318)
T ss_dssp             ECCCCSCBHHHHHHH--TSSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSC
T ss_pred             EeCCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChheEEEcCCCCEEEeecCcceecCCc
Confidence            999999999999986  346899999999999999999999   789999999999999999999999999999876432


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                           ..+.+||+.|+|||++.+..++.++||||+||++|||++|+.||.+......+. .......        ..+. 
T Consensus       160 -----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~-~i~~~~~--------~~p~-  224 (318)
T 1fot_A          160 -----TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYE-KILNAEL--------RFPP-  224 (318)
T ss_dssp             -----BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHH-HHHHCCC--------CCCT-
T ss_pred             -----cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHH-HHHhCCC--------CCCC-
Confidence                 245689999999999999999999999999999999999999997654432221 1111100        0111 


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARP-----KMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~  828 (833)
                           ....++.+++.+|++.||++||     +++|+++|
T Consensus       225 -----~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~h  259 (318)
T 1fot_A          225 -----FFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNH  259 (318)
T ss_dssp             -----TSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTS
T ss_pred             -----CCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhcC
Confidence                 1234678999999999999999     89998864

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=1.4e-43  Score=381.13  Aligned_cols=248  Identities=15%  Similarity=0.217  Sum_probs=205.1

Q ss_pred             cCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      |+..+.||+|+||.||+|+.. +|+.||||++...    .....+.+.+|++++++++|||||+++++|...+..++|||
T Consensus        47 ~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~----~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e  122 (321)
T 2c30_A           47 LDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLR----KQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLME  122 (321)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETT----TCCSHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             hhccEEeccCCCeEEEEEEECCCCcEEEEEEEecc----chhHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEe
Confidence            666789999999999999975 7999999998422    22345779999999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      |+++|+|.+++..   ..++|..+..++.|+++||+|||   +.+|+||||||+||+++.++.+||+|||+++.......
T Consensus       123 ~~~~~~L~~~l~~---~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~  196 (321)
T 2c30_A          123 FLQGGALTDIVSQ---VRLNEEQIATVCEAVLQALAYLH---AQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVP  196 (321)
T ss_dssp             CCCSCBHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC
T ss_pred             cCCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCcEEEeeeeeeeecccCcc
Confidence            9999999999874   35999999999999999999999   78999999999999999999999999999987654322


Q ss_pred             CCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCch
Q 003296          716 TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSL  795 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  795 (833)
                        ......||+.|+|||++.+..++.++|||||||++|||++|+.||......... ...... .      .+...    
T Consensus       197 --~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~~~-~~~~~~-~------~~~~~----  262 (321)
T 2c30_A          197 --KRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAM-KRLRDS-P------PPKLK----  262 (321)
T ss_dssp             --CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHH-HHHHHS-S------CCCCT----
T ss_pred             --ccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH-HHHhcC-C------CCCcC----
Confidence              224568999999999999889999999999999999999999999755433221 111111 0      00010    


Q ss_pred             hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          796 AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       796 ~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .....+.++.+++.+||+.||++|||++|++++
T Consensus       263 ~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h  295 (321)
T 2c30_A          263 NSHKVSPVLRDFLERMLVRDPQERATAQELLDH  295 (321)
T ss_dssp             TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             ccccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            011223467899999999999999999999875

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=3.9e-44  Score=380.54  Aligned_cols=261  Identities=19%  Similarity=0.248  Sum_probs=205.2

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +.|+..+.||+|+||.||+|+. .+|+.||||++.... .......+.|.+|++++++++|||||++++++..++..|+|
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv   89 (294)
T 4eqm_A           11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPP-REKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV   89 (294)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCS-SCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred             ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCc-cccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence            4577889999999999999996 478999999984221 11222346899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++..  ...+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus        90 ~e~~~g~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  164 (294)
T 4eqm_A           90 MEYIEGPTLSEYIES--HGPLSVDTAINFTNQILDGIKHAH---DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSET  164 (294)
T ss_dssp             EECCCSCBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC---
T ss_pred             EeCCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEEeCCCccccccc
Confidence            999999999999986  346999999999999999999999   788999999999999999999999999999865433


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      ... ......||+.|+|||++.+..++.++||||+||++|||+||+.||.+..............   .... .....  
T Consensus       165 ~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~---~~~~-~~~~~--  237 (294)
T 4eqm_A          165 SLT-QTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKHIQDS---VPNV-TTDVR--  237 (294)
T ss_dssp             -----------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHHHHHSSC---CCCH-HHHSC--
T ss_pred             ccc-ccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhhcc---CCCc-chhcc--
Confidence            211 2234679999999999999899999999999999999999999998654433222211111   0000 00000  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCC-CHHHHHHHHHhc
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARP-KMKSVLRMLLNA  832 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rp-s~~evl~~L~~~  832 (833)
                          ...+..+.+++.+|++.||++|| +++++.+.|+++
T Consensus       238 ----~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~  273 (294)
T 4eqm_A          238 ----KDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSV  273 (294)
T ss_dssp             ----TTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTS
T ss_pred             ----cCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHH
Confidence                12345678999999999999998 999999998865

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=1.3e-44  Score=398.08  Aligned_cols=258  Identities=17%  Similarity=0.206  Sum_probs=207.3

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|...+.||+|+||.||+|... +|+.||||+++...   .....++|.+|+++|++++|||||+++++|..++..|+|
T Consensus       114 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv  190 (377)
T 3cbl_A          114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETL---PPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIV  190 (377)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTS---CHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred             HHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccC---CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEE
Confidence            46777899999999999999985 79999999985221   112245789999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||||++|+|.++++.. ...+++.++..++.|+++||+|||   +.+|+||||||+|||++.++.+||+|||+++.....
T Consensus       191 ~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~  266 (377)
T 3cbl_A          191 MELVQGGDFLTFLRTE-GARLRVKTLLQMVGDAAAGMEYLE---SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADG  266 (377)
T ss_dssp             EECCTTCBHHHHHHHH-GGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTS
T ss_pred             EEcCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCC
Confidence            9999999999999753 235899999999999999999999   788999999999999999999999999999875432


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      ..........+++.|+|||++.+..++.++|||||||++|||+| |+.||.+..... . ..........      ..+ 
T Consensus       267 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~-~-~~~~~~~~~~------~~~-  337 (377)
T 3cbl_A          267 VYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQ-T-REFVEKGGRL------PCP-  337 (377)
T ss_dssp             EEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHH-H-HHHHHTTCCC------CCC-
T ss_pred             ceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH-H-HHHHHcCCCC------CCC-
Confidence            21111122346788999999998899999999999999999998 999997543321 1 1111111110      001 


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR  833 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r  833 (833)
                           ...+.++.+++.+||+.||++|||++||++.|++++
T Consensus       338 -----~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~  373 (377)
T 3cbl_A          338 -----ELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIR  373 (377)
T ss_dssp             -----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             -----CCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence                 112346789999999999999999999999998863

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.6e-42  Score=392.50  Aligned_cols=370  Identities=22%  Similarity=0.224  Sum_probs=324.2

Q ss_pred             CCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCC-CCCcccCCCCCCCEEEccCC
Q 003296           10 LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNG-FLPINLGKTKALEELVLSGN   88 (833)
Q Consensus        10 L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N   88 (833)
                      -+.++++++.++.+|.  -.++|++|||++|+|+++.+..|.++++|++|+|++|.+.+ +.+..|.++++|++|+|++|
T Consensus        12 ~~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   89 (455)
T 3v47_A           12 GYNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN   89 (455)
T ss_dssp             TTEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred             ccccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence            4579999999999987  44889999999999999999999999999999999999974 45778999999999999999


Q ss_pred             cCcccCCccccCCCCCCEEeccCCcCCccCCcc--ccCCCCCcEEECcCCcCCCCCCcc-cccCCccCcccccccccccc
Q 003296           89 AFHGEIPKGIADYRNLTLIDLSANNLSGSVPDR--IGELSKLEVLILSANNLDGRLPTS-LASITTLSRFAANQNKFSGS  165 (833)
Q Consensus        89 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~l~l~~n~l~~~  165 (833)
                      .+++..|..|+++++|++|+|++|++++..+..  |+.+++|++|+|++|.+++..|.. +..+++|+.|++++|.+++.
T Consensus        90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A           90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred             ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence            999999999999999999999999998755544  999999999999999999988877 89999999999999999988


Q ss_pred             CChhhh----hcCCEEecccccccccCCcc--------CCCCCCCCEEecccccCcccCCCCCC-----cCCcEEEcCCc
Q 003296          166 VPGGIT----RFLRNLDLSYNKLLGVIPID--------LLSHPNLQTIDLSVNMLEGSLPQNMS-----PNLVRLRLGTN  228 (833)
Q Consensus       166 ~p~~~~----~~L~~L~Ls~N~l~~~~~~~--------~~~~~~L~~L~Ls~N~l~~~~p~~~~-----~~L~~L~l~~n  228 (833)
                      .|..+.    ..|+.|++++|.+.+..+..        +..+++|++|++++|.+++..|..+.     ++++.|++++|
T Consensus       170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~  249 (455)
T 3v47_A          170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS  249 (455)
T ss_dssp             CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred             ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence            776653    46899999999998766544        33668999999999999887765442     68999999988


Q ss_pred             cccCCC---------CccccCC--CCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEE
Q 003296          229 LLIGEI---------PSATFTS--LEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMN  297 (833)
Q Consensus       229 ~l~~~~---------~~~~f~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  297 (833)
                      ...+..         ....|..  .++|++|++++|.+++..|..|+.+++|+.|+|++|++.+..|..|..+++|+.|+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  329 (455)
T 3v47_A          250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN  329 (455)
T ss_dssp             TTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEE
Confidence            654321         1112222  36899999999999999999999999999999999999988888999999999999


Q ss_pred             ccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCc
Q 003296          298 LQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSG  377 (833)
Q Consensus       298 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  377 (833)
                      |++|.+++..|..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++++
T Consensus       330 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             CCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence            99999999889999999999999999999999889999999999999999999998777888999999999999999998


Q ss_pred             cCCC
Q 003296          378 TIPM  381 (833)
Q Consensus       378 ~~p~  381 (833)
                      ..|.
T Consensus       410 ~~~~  413 (455)
T 3v47_A          410 SCPR  413 (455)
T ss_dssp             CTTT
T ss_pred             CCCc
Confidence            8774

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=2.5e-44  Score=390.74  Aligned_cols=252  Identities=21%  Similarity=0.220  Sum_probs=203.0

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~  631 (833)
                      .++|+..+.||+|+||.||+|+. .+|+.||||+++ +.........+.+.+|+++++++ +|||||++++++.+++..|
T Consensus        22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~-~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~  100 (353)
T 3txo_A           22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLK-KDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF  100 (353)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEE-HHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEE-HHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence            45788899999999999999997 479999999994 32233344567889999999998 6999999999999999999


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      +|||||++|+|.+++..  ...+++.++..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||+|+...
T Consensus       101 lv~E~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~  175 (353)
T 3txo_A          101 FVMEFVNGGDLMFHIQK--SRRFDEARARFYAAEIISALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGI  175 (353)
T ss_dssp             EEEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSC
T ss_pred             EEEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCCcccCCCHHHEEECCCCCEEEccccceeecc
Confidence            99999999999999986  356999999999999999999999   7899999999999999999999999999998643


Q ss_pred             CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      ...  ......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+...... ..........        .+
T Consensus       176 ~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~-~~~i~~~~~~--------~p  244 (353)
T 3txo_A          176 CNG--VTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDDL-FEAILNDEVV--------YP  244 (353)
T ss_dssp             C-----------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHCCCC--------CC
T ss_pred             cCC--ccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHHH-HHHHHcCCCC--------CC
Confidence            222  123567899999999999888899999999999999999999999976543322 2111111000        01


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCCH------HHHHHH
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKM------KSVLRM  828 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~------~evl~~  828 (833)
                      .      ....++.+++.+||+.||++||++      +|+++|
T Consensus       245 ~------~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~h  281 (353)
T 3txo_A          245 T------WLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILRH  281 (353)
T ss_dssp             T------TSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHTS
T ss_pred             C------CCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhhC
Confidence            0      123467899999999999999998      777764

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=6.3e-44  Score=384.48  Aligned_cols=257  Identities=16%  Similarity=0.228  Sum_probs=205.1

Q ss_pred             HhcCCccccccCcccEEEEEEcC----CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP----SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      ..|+..+.||+|+||.||+|.+.    .+..||||+++...   .....+.|.+|++++++++|||||+++++|.+.+..
T Consensus        49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  125 (325)
T 3kul_A           49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGY---TERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLA  125 (325)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCC
T ss_pred             hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCC---CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCcc
Confidence            45777899999999999999974    34569999995321   122356899999999999999999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      |+||||+++|+|.++++.. ...+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++..
T Consensus       126 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~  201 (325)
T 3kul_A          126 MIVTEYMENGSLDTFLRTH-DGQFTIMQLVGMLRGVGAGMRYLS---DLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVL  201 (325)
T ss_dssp             EEEEECCTTCBHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCSSCEEC
T ss_pred             EEEeeCCCCCcHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEECCCCCEEECCCCccccc
Confidence            9999999999999999753 346999999999999999999999   788999999999999999999999999999877


Q ss_pred             CCCCCCC-ccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          711 DPSKSTG-SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       711 ~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ....... ......||+.|+|||++.+..++.++|||||||++|||++ |+.||.+...... ..... .....      
T Consensus       202 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~-~~~~~-~~~~~------  273 (325)
T 3kul_A          202 EDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDV-ISSVE-EGYRL------  273 (325)
T ss_dssp             C----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHH-HHHHH-TTCCC------
T ss_pred             ccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHH-HHHHH-cCCCC------
Confidence            5432211 1233457889999999998899999999999999999999 9999975443221 11111 10000      


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ...      ...+.++.+++.+||+.||++|||+.||++.|+.+
T Consensus       274 ~~~------~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l  311 (325)
T 3kul_A          274 PAP------MGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDAL  311 (325)
T ss_dssp             CCC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CCC------CCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence            000      12345688999999999999999999999999875

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=2.1e-44  Score=395.71  Aligned_cols=253  Identities=15%  Similarity=0.217  Sum_probs=202.7

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~l  632 (833)
                      ++|+..++||+|+||.||+|+.. +|+.||||+++. .........+.+.+|..++.++ +|||||+++++|.+++..|+
T Consensus        52 ~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k-~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l  130 (396)
T 4dc2_A           52 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKK-ELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF  130 (396)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEG-GGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred             hHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEh-hhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence            56888999999999999999974 789999999953 2222333456789999999887 89999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      |||||++|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||+|+....
T Consensus       131 V~E~~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~  205 (396)
T 4dc2_A          131 VIEYVNGGDLMFHMQR--QRKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR  205 (396)
T ss_dssp             EEECCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred             EEEcCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEECCCCCEEEeecceeeeccc
Confidence            9999999999999986  346999999999999999999999   78999999999999999999999999999986432


Q ss_pred             CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccH-------HHHHHHhhccccccccc
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNEL-------AKWVLRNSAQQDKLDHI  785 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~-------~~~~~~~~~~~~~~~~~  785 (833)
                      ..  ....+.+||+.|||||++.+..|+.++||||+||++|||++|+.||......       ..+......        
T Consensus       206 ~~--~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~--------  275 (396)
T 4dc2_A          206 PG--DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVIL--------  275 (396)
T ss_dssp             TT--CCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHH--------
T ss_pred             CC--CccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHh--------
Confidence            22  1335678999999999999999999999999999999999999999632211       111111111        


Q ss_pred             ccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCH------HHHHHH
Q 003296          786 LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKM------KSVLRM  828 (833)
Q Consensus       786 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~------~evl~~  828 (833)
                       ......+    ...+.++.+++.+||+.||++||++      +||++|
T Consensus       276 -~~~~~~p----~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~H  319 (396)
T 4dc2_A          276 -EKQIRIP----RSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGH  319 (396)
T ss_dssp             -HCCCCCC----TTSCHHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHHS
T ss_pred             -ccccCCC----CcCCHHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhcC
Confidence             1111100    1234567899999999999999995      677654

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=4.3e-44  Score=391.95  Aligned_cols=250  Identities=16%  Similarity=0.202  Sum_probs=205.3

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||.||+|... +|+.||||++. +.........+.+.+|++++++++|||||+++++|.+.+..|+|
T Consensus        15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~-~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv   93 (384)
T 4fr4_A           15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMN-KQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMV   93 (384)
T ss_dssp             GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEE-HHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEe-hhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence            46788899999999999999974 78999999994 33333445567899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||||++|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||+++.....
T Consensus        94 ~e~~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~  168 (384)
T 4fr4_A           94 VDLLLGGDLRYHLQQ--NVHFKEETVKLFICELVMALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRE  168 (384)
T ss_dssp             ECCCTTEEHHHHHHT--TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred             EecCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCcHHHeEECCCCCEEEeccceeeeccCC
Confidence            999999999999986  456999999999999999999999   789999999999999999999999999999876543


Q ss_pred             CCCCccccccccccccccccccC---CcccccCcchhhHHHHHHHHhCCCcccCCc--cHHHHHHHhhcccccccccccc
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYT---MRVTMAGNVYSFGVILLELLTGKTAVNQGN--ELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      .   .....+||+.|+|||++.+   ..|+.++|||||||++|||++|+.||....  ...............       
T Consensus       169 ~---~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~-------  238 (384)
T 4fr4_A          169 T---QITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFETTVVT-------  238 (384)
T ss_dssp             C---CBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHHHCCCC-------
T ss_pred             C---ceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHhhcccC-------
Confidence            3   2356789999999999864   458999999999999999999999997432  222222111111000       


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCC-HHHHHH
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPK-MKSVLR  827 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps-~~evl~  827 (833)
                       .+      ...+.++.+++.+||+.||++||+ +++|.+
T Consensus       239 -~p------~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~  271 (384)
T 4fr4_A          239 -YP------SAWSQEMVSLLKKLLEPNPDQRFSQLSDVQN  271 (384)
T ss_dssp             -CC------TTSCHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred             -CC------CcCCHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence             00      112356889999999999999998 777765

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=3.5e-44  Score=400.89  Aligned_cols=257  Identities=16%  Similarity=0.214  Sum_probs=208.1

Q ss_pred             HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      ...+.|+..+.||+|+||.||+|.. .+|+.||+|++.....  .....+.+.+|++++++++|||||++++++.+++..
T Consensus         8 ~~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~--~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~   85 (444)
T 3soa_A            8 RFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKL--SARDHQKLEREARICRLLKHPNIVRLHDSISEEGHH   85 (444)
T ss_dssp             HHHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSC--HHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEE
T ss_pred             cccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccC--CHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEE
Confidence            4567899999999999999999986 5899999999953321  122356799999999999999999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC---CCCCceeccceee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK---SLKEPQIGDIELC  707 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~---~~~~~ki~dfgl~  707 (833)
                      |+|||||++|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+|||++   .++.+||+|||++
T Consensus        86 ~lv~E~~~gg~L~~~i~~--~~~~~e~~~~~i~~qil~aL~~lH---~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a  160 (444)
T 3soa_A           86 YLIFDLVTGGELFEDIVA--REYYSEADASHCIQQILEAVLHCH---QMGVVHRNLKPENLLLASKLKGAAVKLADFGLA  160 (444)
T ss_dssp             EEEECCCBCCBHHHHHHH--CSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSSTTEEESBSSTTCCEEECCCSSC
T ss_pred             EEEEEeCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEeccCCCCcEEEccCcee
Confidence            999999999999999986  356999999999999999999999   78999999999999998   4678999999999


Q ss_pred             eeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc
Q 003296          708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (833)
                      +.......  .....+||+.|+|||++.+..|+.++||||+||++|||++|+.||.+......+....... ...     
T Consensus       161 ~~~~~~~~--~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~-~~~-----  232 (444)
T 3soa_A          161 IEVEGEQQ--AWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGA-YDF-----  232 (444)
T ss_dssp             BCCCTTCC--BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTC-CCC-----
T ss_pred             EEecCCCc--eeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhCC-CCC-----
Confidence            87654322  2345789999999999998899999999999999999999999997654332221111111 000     


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                           ....+...+.++.+++.+||+.||++|||+.|+++|
T Consensus       233 -----~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~h  268 (444)
T 3soa_A          233 -----PSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKH  268 (444)
T ss_dssp             -----CTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             -----CccccccCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence                 011111234578899999999999999999999875

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.4e-44  Score=387.84  Aligned_cols=249  Identities=16%  Similarity=0.196  Sum_probs=203.9

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ..|...+.||+|+||.||+|.. .+|+.||||++. ..........+.+.+|++++++++|||||++++++..++..++|
T Consensus         9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~-~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv   87 (336)
T 3h4j_B            9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFIS-RQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV   87 (336)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEE-HHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEe-hHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            3577789999999999999996 689999999994 22223334457899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+ +|+|.+++..  ...+++.++..++.|++.||+|||   +.+|+||||||+|||+++++.+||+|||+++.....
T Consensus        88 ~E~~-~g~l~~~l~~--~~~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~  161 (336)
T 3h4j_B           88 IEYA-GGELFDYIVE--KKRMTEDEGRRFFQQIICAIEYCH---RHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDG  161 (336)
T ss_dssp             ECCC-CEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTS
T ss_pred             EECC-CCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCchhhEEEcCCCCEEEEEeccceeccCC
Confidence            9999 7899999876  346999999999999999999999   778999999999999999999999999999866433


Q ss_pred             CCCCccccccccccccccccccCCcc-cccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRV-TMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      .   .....+||+.|+|||++.+..+ +.++||||+||++|||++|+.||.+....           .....+.......
T Consensus       162 ~---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~-----------~~~~~i~~~~~~~  227 (336)
T 3h4j_B          162 N---FLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIP-----------NLFKKVNSCVYVM  227 (336)
T ss_dssp             B---TTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSST-----------TCBCCCCSSCCCC
T ss_pred             c---ccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHH-----------HHHHHHHcCCCCC
Confidence            2   2245689999999999988776 68999999999999999999999753221           1111111111110


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      +    ...+.++.+++.+||+.||++|||++|++++
T Consensus       228 p----~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h  259 (336)
T 3h4j_B          228 P----DFLSPGAQSLIRRMIVADPMQRITIQEIRRD  259 (336)
T ss_dssp             C----TTSCHHHHHHHHTTSCSSGGGSCCHHHHTTC
T ss_pred             c----ccCCHHHHHHHHHHcCCChhHCcCHHHHHhC
Confidence            1    1234567899999999999999999999864

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=5.7e-44  Score=389.03  Aligned_cols=259  Identities=15%  Similarity=0.158  Sum_probs=207.4

Q ss_pred             HHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhh-hccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIF-QLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~-~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      ..+.|+..+.||+|+||.||+|.. .+|+.||||++....... .....+.+.+|++++++++|||||+++++|..++..
T Consensus        22 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~  101 (351)
T 3c0i_A           22 FEDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGML  101 (351)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEE
T ss_pred             cccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence            456799999999999999999997 479999999984221111 112457899999999999999999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcC--CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC---ceeccce
Q 003296          631 YLFYEYAPKGTLFDVLHGC--LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE---PQIGDIE  705 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~---~ki~dfg  705 (833)
                      |+|||||++|+|.+++...  ....+++..+..++.|+++||+|||   +.+|+||||||+|||++.++.   +|++|||
T Consensus       102 ~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg  178 (351)
T 3c0i_A          102 YMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCH---DNNIIHRDVKPHCVLLASKENSAPVKLGGFG  178 (351)
T ss_dssp             EEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECSSSTTCCEEECCCT
T ss_pred             EEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChHHeEEecCCCCCcEEEecCc
Confidence            9999999999999888642  1335899999999999999999999   789999999999999986654   9999999


Q ss_pred             eeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccc
Q 003296          706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHI  785 (833)
Q Consensus       706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~  785 (833)
                      +++.......  .....+||+.|+|||++.+..++.++||||+||++|||++|+.||.+...  .........       
T Consensus       179 ~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~i~~~-------  247 (351)
T 3c0i_A          179 VAIQLGESGL--VAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKE--RLFEGIIKG-------  247 (351)
T ss_dssp             TCEECCTTSC--BCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHH--HHHHHHHHT-------
T ss_pred             ceeEecCCCe--eecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHH--HHHHHHHcC-------
Confidence            9987754322  22456899999999999988999999999999999999999999975432  111111111       


Q ss_pred             ccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          786 LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       786 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                         ........+...+.++.+++.+||+.||++|||+.|+++|
T Consensus       248 ---~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h  287 (351)
T 3c0i_A          248 ---KYKMNPRQWSHISESAKDLVRRMLMLDPAERITVYEALNH  287 (351)
T ss_dssp             ---CCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             ---CCCCCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence               0001111112234578899999999999999999999874

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=3.2e-44  Score=392.13  Aligned_cols=256  Identities=19%  Similarity=0.265  Sum_probs=208.1

Q ss_pred             HHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      ...+.|+..+.||+|+||.||+|... +|+.||||++.....  .....+.+.+|++++++++|||||+++++|.+++..
T Consensus        26 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~--~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~  103 (362)
T 2bdw_A           26 KFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKL--SARDFQKLEREARICRKLQHPNIVRLHDSIQEESFH  103 (362)
T ss_dssp             HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             CcccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccC--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEE
Confidence            45678999999999999999999974 799999999953221  112346789999999999999999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC---Cceeccceee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK---EPQIGDIELC  707 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~---~~ki~dfgl~  707 (833)
                      |+|||||++|+|.+++..  ...+++..+..++.|+++||+|||   +.+|+||||||+|||++.++   .+||+|||++
T Consensus       104 ~lv~e~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a  178 (362)
T 2bdw_A          104 YLVFDLVTGGELFEDIVA--REFYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLA  178 (362)
T ss_dssp             EEEECCCCSCBHHHHHTT--CSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred             EEEEecCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEeecCcc
Confidence            999999999999999975  346899999999999999999999   78999999999999998654   5999999999


Q ss_pred             eeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc
Q 003296          708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (833)
                      +......   .....+||+.|+|||++.+..|+.++|||||||++|||++|+.||.+......+. ........      
T Consensus       179 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~-~i~~~~~~------  248 (362)
T 2bdw_A          179 IEVNDSE---AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYA-QIKAGAYD------  248 (362)
T ss_dssp             BCCTTCC---SCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH-HHHHTCCC------
T ss_pred             eEecCCc---ccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHH-HHHhCCCC------
Confidence            8765332   2245789999999999998899999999999999999999999997654322221 11111000      


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                          .....+...+.++.+++.+||+.||++|||+.|+++|
T Consensus       249 ----~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  285 (362)
T 2bdw_A          249 ----YPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKV  285 (362)
T ss_dssp             ----CCTTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             ----CCcccccCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence                0011112334578899999999999999999999875

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=1.7e-43  Score=370.68  Aligned_cols=255  Identities=18%  Similarity=0.248  Sum_probs=210.1

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +.|+..+.||+|+||.||+|...++..||||++....     ...+++.+|++++++++|||||++++++..++..++||
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   82 (268)
T 3sxs_A            8 EEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGS-----MSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVT   82 (268)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTT-----BCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEE
T ss_pred             hheeeeeeeccCCCceEEEEEecCceeEEEEEeccCC-----CcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEE
Confidence            4677889999999999999999888899999994221     23467999999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.+++... ...+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++......
T Consensus        83 e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~  158 (268)
T 3sxs_A           83 EYISNGCLLNYLRSH-GKGLEPSQLLEMCYDVCEGMAFLE---SHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQ  158 (268)
T ss_dssp             ECCTTCBHHHHHHHH-GGGCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTC
T ss_pred             EccCCCcHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcCcceEEECCCCCEEEccCccceecchhh
Confidence            999999999999753 235899999999999999999999   7899999999999999999999999999998765433


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      .. ......||+.|+|||++.+..++.++||||+||++|||+| |+.||........... .... ..   ...+     
T Consensus       159 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~-~~~~-~~---~~~~-----  227 (268)
T 3sxs_A          159 YV-SSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLK-VSQG-HR---LYRP-----  227 (268)
T ss_dssp             EE-ECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHH-HHTT-CC---CCCC-----
T ss_pred             hh-cccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHHHH-HHcC-CC---CCCC-----
Confidence            21 2234567788999999998899999999999999999999 9999975443322211 1111 00   0000     


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR  833 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r  833 (833)
                          ...+.++.+++.+||+.||++|||+.|++++|++++
T Consensus       228 ----~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~  263 (268)
T 3sxs_A          228 ----HLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLR  263 (268)
T ss_dssp             ----TTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGC
T ss_pred             ----CcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhh
Confidence                012346789999999999999999999999999875

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=3.5e-44  Score=385.96  Aligned_cols=254  Identities=18%  Similarity=0.241  Sum_probs=204.1

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||.||+|... +|+.||||++.....   ....+.+.+|++++++++|||||++++++.+++..|+|
T Consensus         7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv   83 (323)
T 3tki_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---VDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF   83 (323)
T ss_dssp             TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC----------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccc---cchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence            46788899999999999999975 899999999843221   12346789999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||||++|+|.+++..  ...+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus        84 ~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  158 (323)
T 3tki_A           84 LEYCSGGELFDRIEP--DIGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYN  158 (323)
T ss_dssp             EECCTTEEGGGGSBT--TTBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEET
T ss_pred             EEcCCCCcHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccccchHHEEEeCCCCEEEEEeeccceeccC
Confidence            999999999999975  446999999999999999999999   789999999999999999999999999999876433


Q ss_pred             CCCCccccccccccccccccccCCcc-cccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRV-TMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      .........+||+.|+|||++.+..+ +.++|||||||++|||++|+.||.....................         
T Consensus       159 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~---------  229 (323)
T 3tki_A          159 NRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLN---------  229 (323)
T ss_dssp             TEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTTST---------
T ss_pred             CcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcccccCC---------
Confidence            32223345789999999999987765 78999999999999999999999754432221111111100000         


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                         .......++.+++.+||+.||++|||++|++++
T Consensus       230 ---~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h  262 (323)
T 3tki_A          230 ---PWKKIDSAPLALLHKILVENPSARITIPDIKKD  262 (323)
T ss_dssp             ---TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             ---ccccCCHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence               011234567799999999999999999999875

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=1.4e-44  Score=399.43  Aligned_cols=256  Identities=16%  Similarity=0.195  Sum_probs=207.7

Q ss_pred             HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      .++|+..+.||+|+||.||+|+.. +|+.||||+++ +.........+.+.+|++++++++|||||+++++|.+++..|+
T Consensus        68 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~-k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~l  146 (410)
T 3v8s_A           68 AEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLS-KFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYM  146 (410)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEE-HHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             ccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEe-hhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEE
Confidence            467888999999999999999975 78999999994 3233334455679999999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      |||||++|+|.++++.   ..+++..+..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||+|+....
T Consensus       147 V~E~~~gg~L~~~l~~---~~~~e~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~  220 (410)
T 3v8s_A          147 VMEYMPGGDLVNLMSN---YDVPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNK  220 (410)
T ss_dssp             EECCCTTEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             EEeCCCCCcHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeeECCCCCEEEeccceeEeecc
Confidence            9999999999999975   35899999999999999999999   78999999999999999999999999999987653


Q ss_pred             CCCCCccccccccccccccccccCCc----ccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMR----VTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ... ....+.+||+.|||||++.+..    |+.++|||||||++|||++|+.||.+........ .........      
T Consensus       221 ~~~-~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~-~i~~~~~~~------  292 (410)
T 3v8s_A          221 EGM-VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYS-KIMNHKNSL------  292 (410)
T ss_dssp             TSE-EECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHH-HHHTHHHHC------
T ss_pred             CCc-ccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhhHHH-HHHhccccc------
Confidence            321 1234678999999999987654    8899999999999999999999998654332221 111110000      


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCC--CCCHHHHHHH
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEA--RPKMKSVLRM  828 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~--Rps~~evl~~  828 (833)
                      ..+.    ....+.++.+++.+||+.+|++  ||+++||++|
T Consensus       293 ~~p~----~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~H  330 (410)
T 3v8s_A          293 TFPD----DNDISKEAKNLICAFLTDREVRLGRNGVEEIKRH  330 (410)
T ss_dssp             CCCT----TCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTS
T ss_pred             cCCC----cccccHHHHHHHHHHccChhhhCCCCCHHHHhcC
Confidence            0000    0112356789999999999998  9999999876

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=8.3e-44  Score=390.49  Aligned_cols=257  Identities=18%  Similarity=0.262  Sum_probs=196.1

Q ss_pred             HhcCCccccccCcccEEEEEEcC----CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP----SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      .+|+..+.||+|+||.||+|+..    ++..||||+++...   .....++|.+|++++++++|||||+++++|...+..
T Consensus        45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~  121 (373)
T 2qol_A           45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGY---TEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPV  121 (373)
T ss_dssp             GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred             hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCcc---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCce
Confidence            57888999999999999999864    57889999995321   122356899999999999999999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      ++|||||++|+|.++++.. ...++|.++..++.|+++||+|||   +.+|+||||||+|||++.++.+||+|||+++..
T Consensus       122 ~lv~e~~~~~sL~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~  197 (373)
T 2qol_A          122 MIVTEYMENGSLDSFLRKH-DAQFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLGRVL  197 (373)
T ss_dssp             EEEEECCTTCBHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC------
T ss_pred             EEEEeCCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEEcCCCCEEECcCcccccc
Confidence            9999999999999999853 346999999999999999999999   778999999999999999999999999999876


Q ss_pred             CCCCCCC-ccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          711 DPSKSTG-SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       711 ~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ....... ......+|+.|+|||++.+..++.++|||||||++|||++ |+.||.+.... +..... ......      
T Consensus       198 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~-~~~~~i-~~~~~~------  269 (373)
T 2qol_A          198 EDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQ-DVIKAV-DEGYRL------  269 (373)
T ss_dssp             ----------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHH-HHHHHH-HTTEEC------
T ss_pred             ccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHH-HHHHHH-HcCCCC------
Confidence            5332111 1123356789999999998899999999999999999998 99999754332 111111 110000      


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                        ..    ....+.++.+++.+||+.||++||++.||+++|+++
T Consensus       270 --~~----~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~  307 (373)
T 2qol_A          270 --PP----PMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKL  307 (373)
T ss_dssp             --CC----CTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             --CC----CccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHH
Confidence              00    012345688999999999999999999999999865

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=1e-43  Score=380.45  Aligned_cols=265  Identities=16%  Similarity=0.227  Sum_probs=203.0

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +.|+..+.||+|+||+||+|+..+|+.||||++....  ......+.+.+|++++++++|||||++++++.+++..++||
T Consensus        21 ~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   98 (311)
T 3niz_A           21 EKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDA--EDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVF   98 (311)
T ss_dssp             CEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC--------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEE
T ss_pred             hhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEeccc--ccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEE
Confidence            5678889999999999999999889999999994221  12233467899999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      |||++ +|.+++... ...+++.++..++.|+++||+|||   +.+|+||||||+|||++.++.+||+|||+++......
T Consensus        99 e~~~~-~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~  173 (311)
T 3niz_A           99 EFMEK-DLKKVLDEN-KTGLQDSQIKIYLYQLLRGVAHCH---QHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPV  173 (311)
T ss_dssp             ECCSE-EHHHHHHTC-TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCC
T ss_pred             cCCCC-CHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCchHhEEECCCCCEEEccCcCceecCCCc
Confidence            99984 888888753 345899999999999999999999   7899999999999999999999999999998764332


Q ss_pred             CCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHH--HHHhhcccc--ccccccc--
Q 003296          715 STGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKW--VLRNSAQQD--KLDHILD--  787 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~--~~~~~~~~~--~~~~~~~--  787 (833)
                      .  ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.......  +........  ......+  
T Consensus       174 ~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  251 (311)
T 3niz_A          174 R--SYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELP  251 (311)
T ss_dssp             C-----CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTSH
T ss_pred             c--cccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhccc
Confidence            2  2245679999999999876 56899999999999999999999999754432221  111111100  0000000  


Q ss_pred             ----cc---ccCC--chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          788 ----FN---VSRT--SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       788 ----~~---~~~~--~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                          ..   ....  .........++.+++.+||+.||++|||++|+++|
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  301 (311)
T 3niz_A          252 LWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNH  301 (311)
T ss_dssp             HHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             hhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence                00   0000  00011223578899999999999999999999975

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=6e-44  Score=386.25  Aligned_cols=251  Identities=21%  Similarity=0.241  Sum_probs=206.3

Q ss_pred             HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~  631 (833)
                      .++|...+.||+|+||.||+|+.. +|+.||||+++ +.........+.+.+|.++++++ +|||||++++++.+++..|
T Consensus        16 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~-~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~   94 (345)
T 1xjd_A           16 IEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALK-KDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLF   94 (345)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEE-HHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEE
T ss_pred             hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEE-hHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEEE
Confidence            457888899999999999999974 79999999994 32222334567789999999987 8999999999999999999


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      +||||+++|+|.+++..  ...+++.++..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||+++...
T Consensus        95 lv~E~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~  169 (345)
T 1xjd_A           95 FVMEYLNGGDLMYHIQS--CHKFDLSRATFYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKENM  169 (345)
T ss_dssp             EEEECCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred             EEEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCChhhEEECCCCCEEEeEChhhhhcc
Confidence            99999999999999986  346899999999999999999999   7899999999999999999999999999998643


Q ss_pred             CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      ....  .....+||+.|+|||++.+..++.++||||+||++|||++|+.||.+...... .........        ..+
T Consensus       170 ~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~-~~~i~~~~~--------~~p  238 (345)
T 1xjd_A          170 LGDA--KTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEEL-FHSIRMDNP--------FYP  238 (345)
T ss_dssp             CTTC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHCCC--------CCC
T ss_pred             cCCC--cccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHHHH-HHHHHhCCC--------CCC
Confidence            2221  23567899999999999998999999999999999999999999976543222 111111100        111


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCCHH-HHHH
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMK-SVLR  827 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~-evl~  827 (833)
                      .      ..+.++.+++.+||+.||++||++. ||++
T Consensus       239 ~------~~s~~~~~li~~lL~~dp~~R~~~~~~i~~  269 (345)
T 1xjd_A          239 R------WLEKEAKDLLVKLFVREPEKRLGVRGDIRQ  269 (345)
T ss_dssp             T------TSCHHHHHHHHHHSCSSGGGSBTTBSCGGG
T ss_pred             c------ccCHHHHHHHHHHhcCCHhHcCCChHHHHc
Confidence            1      1234678999999999999999997 6654

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=2.4e-43  Score=382.92  Aligned_cols=248  Identities=15%  Similarity=0.177  Sum_probs=207.1

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||.||+|+.. +|+.||||++. +.........+.+.+|++++++++|||||++++++.+++..|+|
T Consensus        41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~-~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  119 (350)
T 1rdq_E           41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILD-KQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV  119 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEE-HHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEE-hHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEE
Confidence            46778899999999999999974 79999999994 33333344567899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||+++.....
T Consensus       120 ~e~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~  194 (350)
T 1rdq_E          120 MEYVAGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR  194 (350)
T ss_dssp             EECCTTCBHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC
T ss_pred             EcCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCccceEEECCCCCEEEcccccceeccCC
Confidence            999999999999986  346899999999999999999999   789999999999999999999999999999876432


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                           ....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+..... ..........        ..+  
T Consensus       195 -----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~-~~~~i~~~~~--------~~p--  258 (350)
T 1rdq_E          195 -----TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQ-IYEKIVSGKV--------RFP--  258 (350)
T ss_dssp             -----BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCCC--------CCC--
T ss_pred             -----cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHHH-HHHHHHcCCC--------CCC--
Confidence                 235689999999999999899999999999999999999999997654322 2211111100        011  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCC-----HHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPK-----MKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps-----~~evl~~  828 (833)
                          ...+.++.+++.+||+.||++||+     ++||++|
T Consensus       259 ----~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~h  294 (350)
T 1rdq_E          259 ----SHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNH  294 (350)
T ss_dssp             ----TTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTS
T ss_pred             ----CCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHhC
Confidence                012346789999999999999998     8888764

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=2.5e-44  Score=394.07  Aligned_cols=261  Identities=19%  Similarity=0.237  Sum_probs=208.0

Q ss_pred             HHHhcCCccccccCcccEEEEEEc------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEe
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVM------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVL  625 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~  625 (833)
                      ..+.|+..+.||+|+||.||+|.+      .+++.||||+++....   ....+.|.+|+++++++ +|||||+++++|.
T Consensus        20 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~   96 (359)
T 3vhe_A           20 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT---HSEHRALMSELKILIHIGHHLNVVNLLGACT   96 (359)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC---HHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             cccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCC---HHHHHHHHHHHHHHHhhcCCcceeeeeeeee
Confidence            346788899999999999999973      3678999999953211   12246799999999999 7999999999998


Q ss_pred             cCCc-eEEEEeeCCCCChhhhhhcCCC-----------------------------------------------------
Q 003296          626 ASDS-AYLFYEYAPKGTLFDVLHGCLE-----------------------------------------------------  651 (833)
Q Consensus       626 ~~~~-~~lv~ey~~~g~L~~~l~~~~~-----------------------------------------------------  651 (833)
                      .++. .++|||||++|+|.++++....                                                     
T Consensus        97 ~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (359)
T 3vhe_A           97 KPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDV  176 (359)
T ss_dssp             STTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC-----------------------------------------------
T ss_pred             cCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccchh
Confidence            7654 9999999999999999986432                                                     


Q ss_pred             -----------CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCccc
Q 003296          652 -----------NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLS  720 (833)
Q Consensus       652 -----------~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~  720 (833)
                                 ..+++..+..++.|+++||+|||   +.+|+||||||+||+++.++.+||+|||+++............
T Consensus       177 ~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~  253 (359)
T 3vhe_A          177 EEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKG  253 (359)
T ss_dssp             -------CTTTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC-
T ss_pred             hhcccccchhccccCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEEcCCCcEEEEeccceeeecccccchhcc
Confidence                       12899999999999999999999   7889999999999999999999999999998764433322334


Q ss_pred             cccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHH
Q 003296          721 TVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRS  799 (833)
Q Consensus       721 ~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  799 (833)
                      ...||+.|+|||++.+..++.++|||||||++|||+| |+.||.+.............. ...      ...      ..
T Consensus       254 ~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~-~~~------~~~------~~  320 (359)
T 3vhe_A          254 DARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEG-TRM------RAP------DY  320 (359)
T ss_dssp             -CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHT-CCC------CCC------TT
T ss_pred             ccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHHHHHcC-CCC------CCC------CC
Confidence            5678999999999998899999999999999999999 999997644322222111111 100      000      01


Q ss_pred             HHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          800 QMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       800 ~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .+.++.+++.+||+.||++|||+.||+++|+++
T Consensus       321 ~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~  353 (359)
T 3vhe_A          321 TTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL  353 (359)
T ss_dssp             CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHccCChhhCCCHHHHHHHHHHH
Confidence            234678999999999999999999999999875

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=1.1e-43  Score=372.37  Aligned_cols=254  Identities=20%  Similarity=0.263  Sum_probs=208.4

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      ++|+..+.||+|+||.||+|...+++.||||++...     ....++|.+|++++++++|||||++++++.+++..++||
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~-----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   84 (269)
T 4hcu_A           10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG-----AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVF   84 (269)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTT-----SBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEE
T ss_pred             hhceeeheecCCCccEEEEEEecCCCeEEEEEeccc-----ccCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEE
Confidence            457778999999999999999988999999999422     123467999999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.++++.. ...+++..+..++.|+++||+|||   +.+|+||||||+||+++.++.+||+|||+++......
T Consensus        85 e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~  160 (269)
T 4hcu_A           85 EFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ  160 (269)
T ss_dssp             ECCTTCBHHHHHHTT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHH
T ss_pred             EeCCCCcHHHHHHhc-CcccCHHHHHHHHHHHHHHHHHHH---hCCeecCCcchheEEEcCCCCEEeccccccccccccc
Confidence            999999999999753 346899999999999999999999   7889999999999999999999999999998654322


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      . .......||+.|+|||++.+..++.++||||+||++|||++ |+.||...... ......... ..   .   ...  
T Consensus       161 ~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~-~~~~~~~~~-~~---~---~~~--  229 (269)
T 4hcu_A          161 Y-TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS-EVVEDISTG-FR---L---YKP--  229 (269)
T ss_dssp             H-HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH-HHHHHHHTT-CC---C---CCC--
T ss_pred             c-ccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHH-HHHHHHhcC-cc---C---CCC--
Confidence            1 11234567889999999988889999999999999999999 99999754432 221111111 00   0   000  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                          ...+.++.+++.+||+.||++|||++|++++|+++
T Consensus       230 ----~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l  264 (269)
T 4hcu_A          230 ----RLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEI  264 (269)
T ss_dssp             ----TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             ----CcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHH
Confidence                01234678999999999999999999999999876

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=1.3e-43  Score=394.53  Aligned_cols=260  Identities=15%  Similarity=0.169  Sum_probs=209.2

Q ss_pred             HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~  631 (833)
                      ..++|+..++||+|+||+||+|+.. +|+.||||+++ +.........+.+.+|++++++++|||||+++++|.+++..|
T Consensus        72 ~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~-~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~  150 (437)
T 4aw2_A           72 HREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILN-KWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDNNLY  150 (437)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEE-HHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEE
T ss_pred             ChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEE-HHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCEEE
Confidence            3567889999999999999999975 68999999994 322233344566999999999999999999999999999999


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      +|||||++|+|.+++... ...+++..+..++.|++.||+|||   +.+||||||||+|||++.++.+||+|||+|+...
T Consensus       151 lV~Ey~~gg~L~~~l~~~-~~~l~e~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILl~~~g~vkL~DFGla~~~~  226 (437)
T 4aw2_A          151 LVMDYYVGGDLLTLLSKF-EDRLPEEMARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLM  226 (437)
T ss_dssp             EEECCCTTCBHHHHHHTT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred             EEEecCCCCcHHHHHHHc-cCCCCHHHHHHHHHHHHHHHHHHH---hCCeEecccCHHHeeEcCCCCEEEcchhhhhhcc
Confidence            999999999999999863 346999999999999999999999   7899999999999999999999999999998765


Q ss_pred             CCCCCCcccccccccccccccccc-----CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAY-----TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL  786 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  786 (833)
                      .... ......+||+.|||||++.     ...|+.++|||||||++|||++|+.||.+......+... .......    
T Consensus       227 ~~~~-~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~~~~i-~~~~~~~----  300 (437)
T 4aw2_A          227 EDGT-VQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKI-MNHKERF----  300 (437)
T ss_dssp             TTSC-EECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHH-HTHHHHC----
T ss_pred             cCCC-cccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHHHHhh-hhccccc----
Confidence            4332 1234578999999999986     567999999999999999999999999865433322111 1110000    


Q ss_pred             cccccCCchhHHHHHHHHHHHHHhccCCCCCC--CCCHHHHHHH
Q 003296          787 DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEA--RPKMKSVLRM  828 (833)
Q Consensus       787 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~--Rps~~evl~~  828 (833)
                        ..+..   ....+.++.+++.+|+..+|++  ||+++|+++|
T Consensus       301 --~~p~~---~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~H  339 (437)
T 4aw2_A          301 --QFPTQ---VTDVSENAKDLIRRLICSREHRLGQNGIEDFKKH  339 (437)
T ss_dssp             --CCCSS---CCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHTS
T ss_pred             --cCCcc---cccCCHHHHHHHHHHhcccccccCCCCHHHHhCC
Confidence              00000   0112346789999999998888  9999999875

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=4.4e-44  Score=392.26  Aligned_cols=258  Identities=19%  Similarity=0.261  Sum_probs=205.8

Q ss_pred             HhcCCccccccCcccEEEEEEc------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC
Q 003296          555 AVANPLNVELKTRFSTYYKAVM------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~  628 (833)
                      ++|+..+.||+|+||.||+|+.      .+++.||||+++...   .......|.+|+.++++++|||||++++++...+
T Consensus        71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~  147 (367)
T 3l9p_A           71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC---SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL  147 (367)
T ss_dssp             GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSC---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEeccccc---ChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCC
Confidence            5677889999999999999994      257789999994221   1223457999999999999999999999999999


Q ss_pred             ceEEEEeeCCCCChhhhhhcCCC-----CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC---Cce
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCLE-----NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK---EPQ  700 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~~-----~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~---~~k  700 (833)
                      ..++|||||++|+|.++++....     ..+++.+++.++.|+++||+|||   +.+|+||||||+|||++.++   .+|
T Consensus       148 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~k  224 (367)
T 3l9p_A          148 PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAK  224 (367)
T ss_dssp             SCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEE
T ss_pred             CCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEEecCCCCceEE
Confidence            99999999999999999985321     35899999999999999999999   78999999999999999554   599


Q ss_pred             eccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccc
Q 003296          701 IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQ  779 (833)
Q Consensus       701 i~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~  779 (833)
                      |+|||+++...............||+.|+|||++.+..++.++|||||||++|||+| |+.||...... +........ 
T Consensus       225 L~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~-~~~~~i~~~-  302 (367)
T 3l9p_A          225 IGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ-EVLEFVTSG-  302 (367)
T ss_dssp             ECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH-HHHHHHHTT-
T ss_pred             ECCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH-HHHHHHHcC-
Confidence            999999986532222222345678999999999988899999999999999999998 99999754432 222111111 


Q ss_pred             ccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          780 DKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ....      ..      ...+.++.+++.+||+.||++|||+.||+++|+.+
T Consensus       303 ~~~~------~~------~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~  343 (367)
T 3l9p_A          303 GRMD------PP------KNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYC  343 (367)
T ss_dssp             CCCC------CC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CCCC------CC------ccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence            1000      00      12234678999999999999999999999999864

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=5.5e-44  Score=385.57  Aligned_cols=256  Identities=20%  Similarity=0.295  Sum_probs=198.9

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCce----EEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMS----YFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS  629 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~----vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~  629 (833)
                      ++|+..+.||+|+||.||+|+. .+|+.    ||+|++...   ......++|.+|++++++++|||||+++++|..++ 
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-   90 (327)
T 3poz_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA---TSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-   90 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC----------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-
T ss_pred             HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccc---cCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-
Confidence            4678889999999999999996 35544    588887421   22345678999999999999999999999998754 


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                      .++||||+++|+|.+++... ...+++..++.|+.|+++||+|||   +.+|+||||||+|||++.++.+||+|||+++.
T Consensus        91 ~~~v~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~  166 (327)
T 3poz_A           91 VQLITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKL  166 (327)
T ss_dssp             EEEEEECCTTCBHHHHHHHS-TTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTHHHH
T ss_pred             eEEEEEecCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCChheEEECCCCCEEEccCcceeE
Confidence            78999999999999999864 346999999999999999999999   77999999999999999999999999999987


Q ss_pred             eCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ..............||+.|+|||++.+..++.++|||||||++|||+| |+.||.+...... ... ........     
T Consensus       167 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~-~~~-~~~~~~~~-----  239 (327)
T 3poz_A          167 LGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEI-SSI-LEKGERLP-----  239 (327)
T ss_dssp             HTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH-HHH-HHTTCCCC-----
T ss_pred             ccCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHH-HHH-HHcCCCCC-----
Confidence            754443333345667899999999999999999999999999999999 9999975432211 111 11100000     


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                       ..      .....++.+++.+||+.||++|||+.|++++|+.+
T Consensus       240 -~~------~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~  276 (327)
T 3poz_A          240 -QP------PICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKM  276 (327)
T ss_dssp             -CC------TTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHH
T ss_pred             -CC------ccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence             00      11234678999999999999999999999999764

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=6.5e-43  Score=372.88  Aligned_cols=262  Identities=20%  Similarity=0.257  Sum_probs=203.1

Q ss_pred             HHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhc--CCCCCcccceEEEecC----
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGK--LSNSNVMTPLAYVLAS----  627 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~--l~H~niv~~~~~~~~~----  627 (833)
                      .++|+..+.||+|+||.||+|+. +|+.||||++...       ..+.+.+|.+++..  ++|||||++++++...    
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~-------~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~   78 (301)
T 3q4u_A            7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR-------DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSS   78 (301)
T ss_dssp             GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG-------GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTE
T ss_pred             cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc-------cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCC
Confidence            45788889999999999999988 7999999999422       23566777777766  7999999999997653    


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCC-----CCCeeecCCCccceeeCCCCCceec
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFT-----SNPILLLDLSTRNIFLKSLKEPQIG  702 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~-----~~~iiHrdlk~~Nill~~~~~~ki~  702 (833)
                      ...++||||+++|+|.++++.   ..+++..+..++.|+++||+|||...     +.+|+||||||+|||++.++.+||+
T Consensus        79 ~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~  155 (301)
T 3q4u_A           79 TQLWLITHYHEMGSLYDYLQL---TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIA  155 (301)
T ss_dssp             EEEEEEECCCTTCBHHHHHTT---CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEEC
T ss_pred             ceeEEehhhccCCCHHHHHhh---cccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEe
Confidence            458999999999999999964   46999999999999999999999432     5689999999999999999999999


Q ss_pred             cceeeeeeCCCCCCC--ccccccccccccccccccCC------cccccCcchhhHHHHHHHHhC----------CCcccC
Q 003296          703 DIELCKVIDPSKSTG--SLSTVAGSVGYIPPEYAYTM------RVTMAGNVYSFGVILLELLTG----------KTAVNQ  764 (833)
Q Consensus       703 dfgl~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~S~Gvvl~elltg----------~~p~~~  764 (833)
                      |||+++.........  ......||+.|+|||++.+.      .++.++|||||||++|||+||          +.||.+
T Consensus       156 Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~  235 (301)
T 3q4u_A          156 DLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYD  235 (301)
T ss_dssp             CCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTT
T ss_pred             eCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccc
Confidence            999998765433211  12335899999999998876      567899999999999999999          888863


Q ss_pred             Ccc---HHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          765 GNE---LAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       765 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ...   ..............     .+..+. .......+.++.+++.+||+.||++|||+.||++.|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i  300 (301)
T 3q4u_A          236 VVPNDPSFEDMRKVVCVDQQ-----RPNIPN-RWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI  300 (301)
T ss_dssp             TSCSSCCHHHHHHHHTTSCC-----CCCCCG-GGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred             cCCCCcchhhhhHHHhccCC-----CCCCCh-hhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence            211   11111111111010     011110 111224567899999999999999999999999999976

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=2e-43  Score=390.44  Aligned_cols=258  Identities=17%  Similarity=0.170  Sum_probs=206.6

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      .++|+..++||+|+||.||+|+. .+|+.||||++++ .........+.+.+|++++.+++|||||+++++|.+++..|+
T Consensus        60 ~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k-~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~l  138 (412)
T 2vd5_A           60 RDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNK-WDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENYLYL  138 (412)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEH-HHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEE
T ss_pred             hhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeH-HHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEE
Confidence            46788999999999999999997 4799999999942 222223345679999999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      |||||++|+|.+++... ...+++..+..++.|++.||+|||   +.+||||||||+|||++.++.+||+|||+++....
T Consensus       139 VmE~~~gg~L~~~l~~~-~~~l~~~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILld~~g~vkL~DFGla~~~~~  214 (412)
T 2vd5_A          139 VMEYYVGGDLLTLLSKF-GERIPAEMARFYLAEIVMAIDSVH---RLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRA  214 (412)
T ss_dssp             EECCCCSCBHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             EEcCCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccCHHHeeecCCCCEEEeechhheeccC
Confidence            99999999999999753 236899999999999999999999   78999999999999999999999999999987754


Q ss_pred             CCCCCcccccccccccccccccc-------CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccc
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAY-------TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHI  785 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~  785 (833)
                      ... ......+||+.|||||++.       ...|+.++|||||||++|||++|+.||.+......+... ........  
T Consensus       215 ~~~-~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i-~~~~~~~~--  290 (412)
T 2vd5_A          215 DGT-VRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETYGKI-VHYKEHLS--  290 (412)
T ss_dssp             TSC-EECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHH-HTHHHHCC--
T ss_pred             CCc-cccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHHHHHH-HhcccCcC--
Confidence            332 1223568999999999987       457999999999999999999999999865443222111 11000000  


Q ss_pred             ccccccCCchhHHHHHHHHHHHHHhccCCCCCCC---CCHHHHHHH
Q 003296          786 LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEAR---PKMKSVLRM  828 (833)
Q Consensus       786 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~R---ps~~evl~~  828 (833)
                          .+   ......+.++.+++.+||. +|++|   |+++||++|
T Consensus       291 ----~p---~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~H  328 (412)
T 2vd5_A          291 ----LP---LVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRTH  328 (412)
T ss_dssp             ----CC-------CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHTS
T ss_pred             ----CC---ccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhcC
Confidence                00   0011234578899999999 99998   699999865

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.2e-43  Score=389.19  Aligned_cols=258  Identities=20%  Similarity=0.230  Sum_probs=209.5

Q ss_pred             HhcCCccccccCcccEEEEEEcC--------CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEe
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP--------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVL  625 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~  625 (833)
                      +.|...+.||+|+||.||+|+..        ++..||||+++...   .....+.+.+|+++++++ +|||||+++++|.
T Consensus        69 ~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~  145 (382)
T 3tt0_A           69 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA---TEKDLSDLISEMEMMKMIGKHKNIINLLGACT  145 (382)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTC---CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             hheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeecccc---CHHHHHHHHHHHHHHHHhcCCchhhhheeeec
Confidence            56778899999999999999852        34679999995321   122346799999999999 8999999999999


Q ss_pred             cCCceEEEEeeCCCCChhhhhhcCC--------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccce
Q 003296          626 ASDSAYLFYEYAPKGTLFDVLHGCL--------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNI  691 (833)
Q Consensus       626 ~~~~~~lv~ey~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Ni  691 (833)
                      .++..++||||+++|+|.+++....              ...+++.+++.|+.|++.||+|||   +.+|+||||||+||
T Consensus       146 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NI  222 (382)
T 3tt0_A          146 QDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNV  222 (382)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGE
T ss_pred             cCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCcceE
Confidence            9999999999999999999998643              135899999999999999999999   78999999999999


Q ss_pred             eeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHH
Q 003296          692 FLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAK  770 (833)
Q Consensus       692 ll~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~  770 (833)
                      |+++++.+||+|||+++...............||+.|+|||++.+..++.++|||||||++|||++ |+.||.+... .+
T Consensus       223 ll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~-~~  301 (382)
T 3tt0_A          223 LVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPV-EE  301 (382)
T ss_dssp             EECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH-HH
T ss_pred             EEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCH-HH
Confidence            999999999999999987654433233345678999999999999899999999999999999999 9999975432 22


Q ss_pred             HHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          771 WVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ...... .....      ....      ..+.++.+++.+||+.||++|||++||+++|+++
T Consensus       302 ~~~~~~-~~~~~------~~~~------~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~  350 (382)
T 3tt0_A          302 LFKLLK-EGHRM------DKPS------NCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI  350 (382)
T ss_dssp             HHHHHH-TTCCC------CCCS------SCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHH-cCCCC------CCCc------cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            221111 11110      0001      1234678999999999999999999999999875

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.2e-42  Score=374.06  Aligned_cols=268  Identities=15%  Similarity=0.172  Sum_probs=209.3

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC--ceE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD--SAY  631 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~--~~~  631 (833)
                      ..|...+.||+|+||.||+|+.. +|+.||||++...   ......+.+.+|++++++++|||||++++++...+  ..+
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   85 (319)
T 4euu_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNI---SFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKV   85 (319)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGG---GGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEE
T ss_pred             CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccc---cccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEE
Confidence            35777899999999999999975 6999999999522   12334678899999999999999999999998765  789


Q ss_pred             EEEeeCCCCChhhhhhcCCC-CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee----CCCCCceecccee
Q 003296          632 LFYEYAPKGTLFDVLHGCLE-NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL----KSLKEPQIGDIEL  706 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill----~~~~~~ki~dfgl  706 (833)
                      +||||+++|+|.+++..... ..+++.++..++.|+++||+|||   +.+|+||||||+||++    +.++.+||+|||+
T Consensus        86 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~  162 (319)
T 4euu_A           86 LIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGA  162 (319)
T ss_dssp             EEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEECTTSCEEEEECCCTT
T ss_pred             EEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEEeccCCCCceEEEccCCC
Confidence            99999999999999986432 24999999999999999999999   7899999999999999    7888899999999


Q ss_pred             eeeeCCCCCCCcccccccccccccccccc--------CCcccccCcchhhHHHHHHHHhCCCcccCCcc---HHHHHHHh
Q 003296          707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAY--------TMRVTMAGNVYSFGVILLELLTGKTAVNQGNE---LAKWVLRN  775 (833)
Q Consensus       707 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~---~~~~~~~~  775 (833)
                      ++.......   .....||+.|+|||++.        +..++.++|||||||++|||+||+.||.....   ..+.....
T Consensus       163 a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~  239 (319)
T 4euu_A          163 ARELEDDEQ---FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKI  239 (319)
T ss_dssp             CEECCTTCC---BCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHH
T ss_pred             ceecCCCCc---eeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHH
Confidence            988754432   24567999999999875        56789999999999999999999999974221   11221111


Q ss_pred             hccc--cccccc---------ccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          776 SAQQ--DKLDHI---------LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       776 ~~~~--~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                      ....  .....+         .....+............+.+++.+||+.||++|||++|++++..+
T Consensus       240 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d  306 (319)
T 4euu_A          240 ITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSD  306 (319)
T ss_dssp             HHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHH
T ss_pred             hcCCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHH
Confidence            1110  000000         0011111112234566778899999999999999999999999875

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=2.8e-43  Score=382.21  Aligned_cols=252  Identities=21%  Similarity=0.211  Sum_probs=206.6

Q ss_pred             HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~  631 (833)
                      .++|+..+.||+|+||.||+|+.. +|+.||||+++ +.........+.+.+|.++++++ +||||+++++++.+.+..|
T Consensus        19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~-~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~   97 (353)
T 2i0e_A           19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILK-KDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY   97 (353)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEE-HHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEE-HHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence            356888899999999999999975 68999999994 32223344567899999999998 7999999999999999999


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      +||||+++|+|.+++..  ...+++.++..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||+++...
T Consensus        98 lv~E~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~  172 (353)
T 2i0e_A           98 FVMEYVNGGDLMYHIQQ--VGRFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENI  172 (353)
T ss_dssp             EEEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred             EEEeCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEEcCCCcEEEEeCCcccccc
Confidence            99999999999999986  346899999999999999999999   7899999999999999999999999999998643


Q ss_pred             CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      ....  .....+||+.|||||++.+..++.++|||||||++|||++|+.||.+.... +...........        .+
T Consensus       173 ~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~-~~~~~i~~~~~~--------~p  241 (353)
T 2i0e_A          173 WDGV--TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDED-ELFQSIMEHNVA--------YP  241 (353)
T ss_dssp             CTTC--CBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHCCCC--------CC
T ss_pred             cCCc--ccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCHH-HHHHHHHhCCCC--------CC
Confidence            2221  235678999999999999999999999999999999999999999754432 222111111000        11


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCC-----HHHHHHH
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPK-----MKSVLRM  828 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps-----~~evl~~  828 (833)
                            ...+.++.+++.+||+.||++||+     ++||++|
T Consensus       242 ------~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~h  277 (353)
T 2i0e_A          242 ------KSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEH  277 (353)
T ss_dssp             ------TTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHTS
T ss_pred             ------CCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence                  122457889999999999999995     5777654

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=1.6e-43  Score=371.56  Aligned_cols=257  Identities=23%  Similarity=0.291  Sum_probs=194.9

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +.|+..+.||+|+||.||+|.. .|..||||++............+.+.+|++++++++||||++++++|..++..++||
T Consensus         7 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   85 (271)
T 3dtc_A            7 AELTLEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM   85 (271)
T ss_dssp             TSEEEEEEEEEETTEEEEEEEE-TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEE
T ss_pred             hheeeeeeeccCCCeEEEEEEE-cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEE
Confidence            3567788999999999999997 489999999853322222344578999999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC--------CCCceecccee
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS--------LKEPQIGDIEL  706 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~--------~~~~ki~dfgl  706 (833)
                      ||+++|+|.+++..   ..+++..+..++.|+++||+|||+....+|+||||||+||+++.        ++.+|++|||+
T Consensus        86 e~~~~~~L~~~~~~---~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~  162 (271)
T 3dtc_A           86 EFARGGPLNRVLSG---KRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGL  162 (271)
T ss_dssp             ECCTTEEHHHHHTS---SCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC
T ss_pred             EcCCCCCHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCc
Confidence            99999999999964   46899999999999999999999432233999999999999986        67899999999


Q ss_pred             eeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc
Q 003296          707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL  786 (833)
Q Consensus       707 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  786 (833)
                      ++.......    ....||+.|+|||++.+..++.++|||||||++|||++|+.||.+............ . . ..   
T Consensus       163 ~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~-~-~-~~---  232 (271)
T 3dtc_A          163 AREWHRTTK----MSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAM-N-K-LA---  232 (271)
T ss_dssp             -----------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHT-S-C-CC---
T ss_pred             ccccccccc----cCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHhhhc-C-C-CC---
Confidence            986543321    245799999999999888899999999999999999999999976443322111111 1 0 00   


Q ss_pred             cccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          787 DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       787 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                       ....      ...+.++.+++.+||+.||++|||+.|++++|+++
T Consensus       233 -~~~~------~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l  271 (271)
T 3dtc_A          233 -LPIP------STCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI  271 (271)
T ss_dssp             -CCCC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred             -CCCC------cccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence             0011      12234688999999999999999999999999875

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=2.6e-43  Score=381.49  Aligned_cols=254  Identities=19%  Similarity=0.283  Sum_probs=202.1

Q ss_pred             HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC---
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD---  628 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~---  628 (833)
                      ..++|+..+.||+|+||.||+|+.. +|+.||||++....   .....+.+.+|++++++++|||||+++++|.+.+   
T Consensus         4 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~   80 (332)
T 3qd2_B            4 YLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPN---RELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEK   80 (332)
T ss_dssp             HHHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCS---TTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCH
T ss_pred             hhhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCC---chhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccch
Confidence            4568999999999999999999975 89999999995322   2234578999999999999999999999986543   


Q ss_pred             ------------------------------------------------------ceEEEEeeCCCCChhhhhhcCCC-CC
Q 003296          629 ------------------------------------------------------SAYLFYEYAPKGTLFDVLHGCLE-NA  653 (833)
Q Consensus       629 ------------------------------------------------------~~~lv~ey~~~g~L~~~l~~~~~-~~  653 (833)
                                                                            ..++|||||++|+|.+++..... ..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~  160 (332)
T 3qd2_B           81 WQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLED  160 (332)
T ss_dssp             HHHHHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGG
T ss_pred             hhhhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccc
Confidence                                                                  27999999999999999986432 35


Q ss_pred             CCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCC----------Ccccccc
Q 003296          654 LDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST----------GSLSTVA  723 (833)
Q Consensus       654 l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~----------~~~~~~~  723 (833)
                      .++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++........          ......+
T Consensus       161 ~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (332)
T 3qd2_B          161 REHGVCLHIFIQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQV  237 (332)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC
T ss_pred             hhhHHHHHHHHHHHHHHHHHH---hCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccC
Confidence            678889999999999999999   789999999999999999999999999999887543211          1123467


Q ss_pred             ccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHH
Q 003296          724 GSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLT  803 (833)
Q Consensus       724 gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  803 (833)
                      ||+.|+|||++.+..++.++|||||||++|||++|..|+......   ... ... .           ...........+
T Consensus       238 gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~~~~---~~~-~~~-~-----------~~~~~~~~~~~~  301 (332)
T 3qd2_B          238 GTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERVRI---ITD-VRN-L-----------KFPLLFTQKYPQ  301 (332)
T ss_dssp             -CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHHHHH---HHH-HHT-T-----------CCCHHHHHHCHH
T ss_pred             CCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHHHHH---HHH-hhc-c-----------CCCcccccCChh
Confidence            999999999999989999999999999999999998876421111   100 000 0           111223344567


Q ss_pred             HHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          804 VLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       804 ~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      +.+++.+||+.||++|||++|++++
T Consensus       302 ~~~li~~~l~~~p~~Rps~~~~l~~  326 (332)
T 3qd2_B          302 EHMMVQDMLSPSPTERPEATDIIEN  326 (332)
T ss_dssp             HHHHHHHHHCSSGGGSCCHHHHHHS
T ss_pred             HHHHHHHHccCCCCcCCCHHHHhhc
Confidence            7899999999999999999999975

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=2.6e-43  Score=378.39  Aligned_cols=258  Identities=19%  Similarity=0.221  Sum_probs=208.8

Q ss_pred             HhcCCccccccCcccEEEEEEc------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC
Q 003296          555 AVANPLNVELKTRFSTYYKAVM------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~  628 (833)
                      ..|...+.||+|+||.||+|..      .++..||||++....   .....+.+.+|++++++++|||||++++++..++
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~   99 (314)
T 2ivs_A           23 KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENA---SPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDG   99 (314)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS
T ss_pred             hheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCC---CHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCC
Confidence            4677889999999999999985      246889999995322   1223467999999999999999999999999999


Q ss_pred             ceEEEEeeCCCCChhhhhhcCCC----------------------CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCC
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCLE----------------------NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL  686 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~~----------------------~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdl  686 (833)
                      ..++||||+++|+|.+++.....                      ..+++.++..++.|+++||+|||   +.+|+||||
T Consensus       100 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~di  176 (314)
T 2ivs_A          100 PLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA---EMKLVHRDL  176 (314)
T ss_dssp             SCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHH---HTTEECCCC
T ss_pred             ceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHH---HCCCccccc
Confidence            99999999999999999986432                      24899999999999999999999   788999999


Q ss_pred             CccceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCC
Q 003296          687 STRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQG  765 (833)
Q Consensus       687 k~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~  765 (833)
                      ||+||++++++.+||+|||+++...............||+.|+|||++.+..++.++|||||||++|||+| |+.||.+.
T Consensus       177 kp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~  256 (314)
T 2ivs_A          177 AARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGI  256 (314)
T ss_dssp             SGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             chheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            99999999999999999999987754432222234568899999999998889999999999999999999 99999754


Q ss_pred             ccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          766 NELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .....+. . ......      ....      ...+.++.+++.+||+.||++|||+.|++++|+++
T Consensus       257 ~~~~~~~-~-~~~~~~------~~~~------~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~  309 (314)
T 2ivs_A          257 PPERLFN-L-LKTGHR------MERP------DNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKM  309 (314)
T ss_dssp             CGGGHHH-H-HHTTCC------CCCC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CHHHHHH-H-hhcCCc------CCCC------ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence            3321111 1 111000      0000      12235688999999999999999999999999875

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=1.2e-43  Score=403.60  Aligned_cols=253  Identities=19%  Similarity=0.217  Sum_probs=209.3

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..++||+|+||.||+|... +|+.||||++. +...........+.+|+++|++++|||||++++++.+.+..|+|
T Consensus       184 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~-k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV  262 (576)
T 2acx_A          184 NTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLE-KKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV  262 (576)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEE-HHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEE-hHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence            45778899999999999999974 89999999994 33333344567899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||||++|+|.+++.......+++..+..++.||+.||+|||   +.+||||||||+|||++.++.+||+|||+++.....
T Consensus       263 mEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH---~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~  339 (576)
T 2acx_A          263 LTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG  339 (576)
T ss_dssp             ECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred             EEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCchheEEEeCCCCeEEEecccceecccC
Confidence            99999999999998754456999999999999999999999   779999999999999999999999999999887543


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc---HHHHHHHhhcccccccccccccc
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE---LAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                      .   .....+||+.|||||++.+..|+.++|||||||++|||++|+.||.+...   .............        ..
T Consensus       340 ~---~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~~~--------~~  408 (576)
T 2acx_A          340 Q---TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVPE--------EY  408 (576)
T ss_dssp             C---CEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHCCC--------CC
T ss_pred             c---cccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhcccc--------cC
Confidence            3   22456899999999999998999999999999999999999999985432   1111111111100        01


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARP-----KMKSVLRM  828 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~  828 (833)
                      .      ...+.++.+++.+||+.||++||     +++||++|
T Consensus       409 p------~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~H  445 (576)
T 2acx_A          409 S------ERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEH  445 (576)
T ss_dssp             C------TTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHTS
T ss_pred             C------ccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHhC
Confidence            1      12245788999999999999999     78998865

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=1.7e-43  Score=384.78  Aligned_cols=260  Identities=21%  Similarity=0.287  Sum_probs=208.8

Q ss_pred             HHhcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS  627 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~  627 (833)
                      .++|+..+.||+|+||.||+|...      +++.||||+++...   .....+.|.+|++++++++|||||+++++|..+
T Consensus        46 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~  122 (343)
T 1luf_A           46 RNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA---SADMQADFQREAALMAEFDNPNIVKLLGVCAVG  122 (343)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC---CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS
T ss_pred             HHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEecccc---CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccC
Confidence            457888899999999999999974      35889999995321   112346799999999999999999999999999


Q ss_pred             CceEEEEeeCCCCChhhhhhcCC----------------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecC
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCL----------------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLD  685 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~----------------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrd  685 (833)
                      +..++||||+++|+|.+++....                      ...+++.+++.++.|+++||+|||   +.+|+|||
T Consensus       123 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH---~~~ivH~D  199 (343)
T 1luf_A          123 KPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRD  199 (343)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSC
T ss_pred             CceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCC
Confidence            99999999999999999997632                      146899999999999999999999   78999999


Q ss_pred             CCccceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccC
Q 003296          686 LSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQ  764 (833)
Q Consensus       686 lk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~  764 (833)
                      |||+||+++.++.+||+|||+++...............||+.|+|||++.+..++.++|||||||++|||+| |+.||.+
T Consensus       200 lkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~  279 (343)
T 1luf_A          200 LATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYG  279 (343)
T ss_dssp             CSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTT
T ss_pred             CCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCC
Confidence            999999999999999999999986543322222234678999999999988889999999999999999999 9999975


Q ss_pred             CccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296          765 GNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR  833 (833)
Q Consensus       765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r  833 (833)
                      .... +..... ..... ..     ..      ...+.++.+++.+||+.||++|||+.||+++|+++.
T Consensus       280 ~~~~-~~~~~~-~~~~~-~~-----~~------~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~  334 (343)
T 1luf_A          280 MAHE-EVIYYV-RDGNI-LA-----CP------ENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMC  334 (343)
T ss_dssp             SCHH-HHHHHH-HTTCC-CC-----CC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred             CChH-HHHHHH-hCCCc-CC-----CC------CCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHH
Confidence            4332 221111 11110 00     00      122346789999999999999999999999999863

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=2.2e-43  Score=373.87  Aligned_cols=264  Identities=17%  Similarity=0.240  Sum_probs=201.9

Q ss_pred             hcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      .|+..+.||+|+||.||+|...+|+.||||++....  ......+.+.+|++++++++|||||++++++..++..++|||
T Consensus         3 ~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (288)
T 1ob3_A            3 KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEK--EDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFE   80 (288)
T ss_dssp             SEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSS--GGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEE
T ss_pred             cchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccc--cccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEE
Confidence            577788999999999999999889999999995332  223345789999999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      |+++ +|.+++... ...+++.++..++.|+++||+|||   +.+|+||||||+||+++.++.+||+|||+++.......
T Consensus        81 ~~~~-~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  155 (288)
T 1ob3_A           81 HLDQ-DLKKLLDVC-EGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVR  155 (288)
T ss_dssp             CCSE-EHHHHHHTS-TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---
T ss_pred             ecCC-CHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEeECccccccCcccc
Confidence            9985 999998754 346899999999999999999999   78999999999999999999999999999986543221


Q ss_pred             CCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhh--ccc--ccccc-----c
Q 003296          716 TGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNS--AQQ--DKLDH-----I  785 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~--~~~--~~~~~-----~  785 (833)
                        ......||+.|+|||++.+. .++.++||||+||++|||++|+.||.+............  ...  .....     .
T Consensus       156 --~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (288)
T 1ob3_A          156 --KYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPK  233 (288)
T ss_dssp             --------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTT
T ss_pred             --ccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhcccc
Confidence              22346789999999998764 589999999999999999999999986554332221111  000  00000     0


Q ss_pred             ccccccC-----CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          786 LDFNVSR-----TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       786 ~~~~~~~-----~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .++....     ..........++.+++.+||+.||++|||++|+++|
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  281 (288)
T 1ob3_A          234 YDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEH  281 (288)
T ss_dssp             CCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             cccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence            0111000     000011234577899999999999999999999875

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=5.3e-43  Score=379.61  Aligned_cols=253  Identities=15%  Similarity=0.213  Sum_probs=202.8

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~l  632 (833)
                      ++|+..+.||+|+||.||+|+.. +|+.||||++... ........+.+.+|+++++++ +|||||++++++.+++..|+
T Consensus         9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l   87 (345)
T 3a8x_A            9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKE-LVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF   87 (345)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGG-GSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhH-HhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEE
Confidence            46788899999999999999974 7899999999532 212222346788999999998 89999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||||+++|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||+++....
T Consensus        88 v~e~~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~  162 (345)
T 3a8x_A           88 VIEYVNGGDLMFHMQR--QRKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR  162 (345)
T ss_dssp             EECCCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCC
T ss_pred             EEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEEeccccccccC
Confidence            9999999999999976  346899999999999999999999   78999999999999999999999999999986432


Q ss_pred             CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccH-------HHHHHHhhccccccccc
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNEL-------AKWVLRNSAQQDKLDHI  785 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~-------~~~~~~~~~~~~~~~~~  785 (833)
                      ..  ......+||+.|+|||++.+..++.++||||+||++|||++|+.||......       ..........       
T Consensus       163 ~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~-------  233 (345)
T 3a8x_A          163 PG--DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILE-------  233 (345)
T ss_dssp             TT--CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHH-------
T ss_pred             CC--CcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHc-------
Confidence            22  1235678999999999999989999999999999999999999999642111       1111111111       


Q ss_pred             ccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCH------HHHHHH
Q 003296          786 LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKM------KSVLRM  828 (833)
Q Consensus       786 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~------~evl~~  828 (833)
                        .....+    ...+.++.+++.+||+.||++||++      .|+++|
T Consensus       234 --~~~~~p----~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~h  276 (345)
T 3a8x_A          234 --KQIRIP----RSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGH  276 (345)
T ss_dssp             --CCCCCC----TTSCHHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHTS
T ss_pred             --CCCCCC----CCCCHHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhcC
Confidence              011100    1224567899999999999999995      677654

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=1.4e-43  Score=388.45  Aligned_cols=247  Identities=19%  Similarity=0.231  Sum_probs=197.3

Q ss_pred             ccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCC
Q 003296          560 LNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       560 ~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~  638 (833)
                      .+.||+|+||.||+|.. .+|+.||||+++....    ...+.|.+|++++++++|||||+++++|...+..++|||||+
T Consensus        94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~----~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~  169 (373)
T 2x4f_A           94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGM----KDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVD  169 (373)
T ss_dssp             EEECC-----CEEEEEETTTCCEEEEEEEECCSH----HHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred             ceEEecCcCEEEEEEEEcCCCcEEEEEEEccccc----ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCC
Confidence            56899999999999996 5799999999953221    234679999999999999999999999999999999999999


Q ss_pred             CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee--CCCCCceeccceeeeeeCCCCCC
Q 003296          639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL--KSLKEPQIGDIELCKVIDPSKST  716 (833)
Q Consensus       639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill--~~~~~~ki~dfgl~~~~~~~~~~  716 (833)
                      +|+|.+++... ...+++..+..++.|+++||+|||   +.+|+||||||+|||+  +.++.+||+|||+++......  
T Consensus       170 ~~~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~--  243 (373)
T 2x4f_A          170 GGELFDRIIDE-SYNLTELDTILFMKQICEGIRHMH---QMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPRE--  243 (373)
T ss_dssp             TCEEHHHHHHT-GGGCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTC--
T ss_pred             CCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCcc--
Confidence            99999998753 346899999999999999999999   7889999999999999  567889999999999875433  


Q ss_pred             CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchh
Q 003296          717 GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLA  796 (833)
Q Consensus       717 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  796 (833)
                       .....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+......+....... ...          ....
T Consensus       244 -~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~-~~~----------~~~~  311 (373)
T 2x4f_A          244 -KLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACR-WDL----------EDEE  311 (373)
T ss_dssp             -BCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTC-CCS----------CSGG
T ss_pred             -ccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcc-CCC----------Chhh
Confidence             2234679999999999998889999999999999999999999998655433222111111 000          0111


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          797 VRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       797 ~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ......++.+++.+||+.||++|||+.|++++
T Consensus       312 ~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~h  343 (373)
T 2x4f_A          312 FQDISEEAKEFISKLLIKEKSWRISASEALKH  343 (373)
T ss_dssp             GTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             hccCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            11234578899999999999999999999974

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=1.9e-43  Score=402.23  Aligned_cols=255  Identities=16%  Similarity=0.246  Sum_probs=210.1

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      .+|+..+.||+|+||.||+|+.. ++..||||+++..     ....++|.+|+++|++++|||||+++++|..++..|+|
T Consensus       220 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-----~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv  294 (495)
T 1opk_A          220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-----TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII  294 (495)
T ss_dssp             GGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSS-----SSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred             HHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCc-----ccchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEE
Confidence            45777899999999999999975 5899999999522     12467899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||||++|+|.++++......+++..+..++.|+++||+|||   +.+|+||||||+|||++.++.+||+|||+++.....
T Consensus       295 ~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~  371 (495)
T 1opk_A          295 TEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGD  371 (495)
T ss_dssp             EECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTC
T ss_pred             EEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChhhEEECCCCcEEEeecccceeccCC
Confidence            99999999999998755567999999999999999999999   789999999999999999999999999999876433


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      ... ......+|+.|+|||++.+..++.++|||||||++|||+| |+.||.+..... .... .......      ... 
T Consensus       372 ~~~-~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~-~~~~-~~~~~~~------~~~-  441 (495)
T 1opk_A          372 TYT-AHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ-VYEL-LEKDYRM------ERP-  441 (495)
T ss_dssp             CEE-CCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG-HHHH-HHTTCCC------CCC-
T ss_pred             cee-ecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHH-HHHH-HHcCCCC------CCC-
Confidence            211 2234567889999999998899999999999999999999 999997543221 1111 1110000      000 


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                           ...+.++.+++.+||+.||++|||+.||++.|+.+
T Consensus       442 -----~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~  476 (495)
T 1opk_A          442 -----EGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM  476 (495)
T ss_dssp             -----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred             -----CCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHH
Confidence                 12345678999999999999999999999999875

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=4.4e-43  Score=378.24  Aligned_cols=252  Identities=18%  Similarity=0.219  Sum_probs=195.0

Q ss_pred             HhcCCccccccCcccEEEEEEc----CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          555 AVANPLNVELKTRFSTYYKAVM----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      +.|+..+.||+|+||.||+|+.    .+|+.||||+++.............+.+|++++++++|||||++++++..++..
T Consensus        17 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~   96 (327)
T 3a62_A           17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKL   96 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSCE
T ss_pred             HHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCEE
Confidence            4688889999999999999986    478999999995332222223456788999999999999999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      |+|||||++|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||+++..
T Consensus        97 ~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~  171 (327)
T 3a62_A           97 YLILEYLSGGELFMQLER--EGIFMEDTACFYLAEISMALGHLH---QKGIIYRDLKPENIMLNHQGHVKLTDFGLCKES  171 (327)
T ss_dssp             EEEEECCTTEEHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTSCEEECCCSCC---
T ss_pred             EEEEeCCCCCcHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHH---hCCEEcccCCHHHeEECCCCcEEEEeCCccccc
Confidence            999999999999999976  346899999999999999999999   779999999999999999999999999999864


Q ss_pred             CCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296          711 DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                      .....  .....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+...... .........        ..
T Consensus       172 ~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~-~~~i~~~~~--------~~  240 (327)
T 3a62_A          172 IHDGT--VTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKT-IDKILKCKL--------NL  240 (327)
T ss_dssp             ---------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHTCC--------CC
T ss_pred             ccCCc--cccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHHH-HHHHHhCCC--------CC
Confidence            32221  22456899999999999988899999999999999999999999976543222 111111100        01


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARP-----KMKSVLRM  828 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~  828 (833)
                      +.      ....++.+++.+||+.||++||     ++.|+++|
T Consensus       241 p~------~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~h  277 (327)
T 3a62_A          241 PP------YLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAH  277 (327)
T ss_dssp             CT------TSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHS
T ss_pred             CC------CCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHcC
Confidence            10      1234678999999999999999     78888875

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=1.1e-42  Score=390.99  Aligned_cols=249  Identities=19%  Similarity=0.254  Sum_probs=206.4

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      .|...+.||+|+||.||+|+.. +|+.||||++. ..........+.+.+|++++++++|||||++++++..++..|+||
T Consensus        17 ~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~-~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~   95 (476)
T 2y94_A           17 HYILGDTLGVGTFGKVKVGKHELTGHKVAVKILN-RQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM   95 (476)
T ss_dssp             TEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEE-HHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEE-hhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            5777889999999999999975 89999999994 222223344678999999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      |||++|+|.+++..  ...+++.++..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||+++......
T Consensus        96 E~~~gg~L~~~l~~--~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~  170 (476)
T 2y94_A           96 EYVSGGELFDYICK--NGRLDEKESRRLFQQILSGVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE  170 (476)
T ss_dssp             ECCSSEEHHHHTTS--SSSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEECTTCCEEECCCSSCEECCTTC
T ss_pred             eCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcccccHHHEEEecCCCeEEEeccchhhccccc
Confidence            99999999999975  456999999999999999999999   7899999999999999999999999999999875433


Q ss_pred             CCCccccccccccccccccccCCcc-cccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRV-TMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                         ...+.+||+.|+|||++.+..+ +.++||||+||++|||++|+.||.+..... ........          ....+
T Consensus       171 ---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~-~~~~i~~~----------~~~~p  236 (476)
T 2y94_A          171 ---FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPT-LFKKICDG----------IFYTP  236 (476)
T ss_dssp             ---CBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHH-HHHHHHTT----------CCCCC
T ss_pred             ---cccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHHH-HHHHHhcC----------CcCCC
Confidence               2345789999999999988776 689999999999999999999998654322 21111111          00000


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                          .....++.+++.+||+.||++|||++||++|
T Consensus       237 ----~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~h  267 (476)
T 2y94_A          237 ----QYLNPSVISLLKHMLQVDPMKRATIKDIREH  267 (476)
T ss_dssp             ----TTCCHHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred             ----ccCCHHHHHHHHHHcCCCchhCcCHHHHHhC
Confidence                0123467899999999999999999999874

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=4.9e-43  Score=381.15  Aligned_cols=251  Identities=19%  Similarity=0.200  Sum_probs=191.1

Q ss_pred             HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      .+.|+..+.||+|+||.||+|+.. +++.||||++...      ...+.+.+|++++++++|||||+++++|..++..++
T Consensus        52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~------~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l  125 (349)
T 2w4o_A           52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKT------VDKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISL  125 (349)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC----------------CHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccc------hhHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEE
Confidence            456888899999999999999975 6889999999422      124578899999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC---CCCceeccceeeee
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS---LKEPQIGDIELCKV  709 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~---~~~~ki~dfgl~~~  709 (833)
                      ||||+++|+|.+++..  ...+++.++..++.|+++||+|||   +.+|+||||||+||+++.   ++.+||+|||+++.
T Consensus       126 v~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~  200 (349)
T 2w4o_A          126 VLELVTGGELFDRIVE--KGYYSERDAADAVKQILEAVAYLH---ENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKI  200 (349)
T ss_dssp             EECCCCSCBHHHHHTT--CSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESSSSTTCCEEECCCC----
T ss_pred             EEEeCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCcccEEEecCCCCCCEEEccCccccc
Confidence            9999999999999976  456899999999999999999999   778999999999999975   88999999999987


Q ss_pred             eCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      .....   .....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+.................   ..   
T Consensus       201 ~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~~~~~~---~~---  271 (349)
T 2w4o_A          201 VEHQV---LMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYY---FI---  271 (349)
T ss_dssp             ---------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHTTCCC---CC---
T ss_pred             cCccc---ccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhCCCc---cC---
Confidence            64322   2245689999999999999899999999999999999999999997655433222222111110   00   


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                          .......+.++.+++.+||+.||++|||+.|++++
T Consensus       272 ----~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  306 (349)
T 2w4o_A          272 ----SPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQH  306 (349)
T ss_dssp             ----TTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             ----CchhhhCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                00111234577899999999999999999999875

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=6e-43  Score=372.52  Aligned_cols=253  Identities=17%  Similarity=0.210  Sum_probs=197.2

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhh----------------------hccChhHHHHHHHHHhc
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIF----------------------QLGSHHKFDKELEVLGK  611 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~----------------------~~~~~~~~~~E~~~l~~  611 (833)
                      +.|+..+.||+|+||.||+|+. .+|+.||||++.......                      .....+.|.+|++++++
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~   92 (298)
T 2zv2_A           13 NQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKK   92 (298)
T ss_dssp             TTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHT
T ss_pred             cceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHh
Confidence            3577889999999999999996 478999999985332111                      01224679999999999


Q ss_pred             CCCCCcccceEEEec--CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCcc
Q 003296          612 LSNSNVMTPLAYVLA--SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTR  689 (833)
Q Consensus       612 l~H~niv~~~~~~~~--~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~  689 (833)
                      ++|||||++++++.+  .+..|+||||+++|+|.+++..   ..+++.++..++.|+++||+|||   +.+|+||||||+
T Consensus        93 l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~  166 (298)
T 2zv2_A           93 LDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL---KPLSEDQARFYFQDLIKGIEYLH---YQKIIHRDIKPS  166 (298)
T ss_dssp             CCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS---SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGG
T ss_pred             CCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHH
Confidence            999999999999987  5679999999999999987653   46999999999999999999999   778999999999


Q ss_pred             ceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCc---ccccCcchhhHHHHHHHHhCCCcccCCc
Q 003296          690 NIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMR---VTMAGNVYSFGVILLELLTGKTAVNQGN  766 (833)
Q Consensus       690 Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~S~Gvvl~elltg~~p~~~~~  766 (833)
                      ||+++.++.+||+|||+++.......  ......||+.|+|||++.+..   ++.++|||||||++|||++|+.||.+..
T Consensus       167 Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~  244 (298)
T 2zv2_A          167 NLLVGEDGHIKIADFGVSNEFKGSDA--LLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDER  244 (298)
T ss_dssp             GEEECTTSCEEECCCTTCEECSSSSC--EECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             HEEECCCCCEEEecCCCccccccccc--cccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCcc
Confidence            99999999999999999987653321  234568999999999987654   4788999999999999999999997543


Q ss_pred             cHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          767 ELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .. .+...........        ...    ...+.++.+++.+||+.||++|||+.|+++|
T Consensus       245 ~~-~~~~~~~~~~~~~--------~~~----~~~~~~l~~li~~~l~~dp~~R~s~~e~l~h  293 (298)
T 2zv2_A          245 IM-CLHSKIKSQALEF--------PDQ----PDIAEDLKDLITRMLDKNPESRIVVPEIKLH  293 (298)
T ss_dssp             HH-HHHHHHHHCCCCC--------CSS----SCCCHHHHHHHHHHTCSCTTTSCCHHHHTTC
T ss_pred             HH-HHHHHHhcccCCC--------CCc----cccCHHHHHHHHHHhhcChhhCCCHHHHhcC
Confidence            22 2221111110000        000    0123467899999999999999999999865

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=5.4e-43  Score=384.70  Aligned_cols=252  Identities=17%  Similarity=0.226  Sum_probs=205.9

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +.|+..+.||+|+||.||+|... +|+.||+|++.....    .....+.+|+++|++++|||||+++++|.+.+..++|
T Consensus        51 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv  126 (387)
T 1kob_A           51 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYP----LDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLI  126 (387)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSH----HHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEE
T ss_pred             cceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccch----hhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEE
Confidence            56888999999999999999974 789999999853221    1245789999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC--CCCceeccceeeeeeC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS--LKEPQIGDIELCKVID  711 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~--~~~~ki~dfgl~~~~~  711 (833)
                      ||||++|+|.+++... ...+++.++..++.|++.||+|||   +.+|+||||||+|||++.  .+.+||+|||+++...
T Consensus       127 ~E~~~gg~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~  202 (387)
T 1kob_A          127 LEFLSGGELFDRIAAE-DYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLN  202 (387)
T ss_dssp             EECCCCCBHHHHTTCT-TCCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECC
T ss_pred             EEcCCCCcHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccchHHeEEecCCCCceEEEecccceecC
Confidence            9999999999999753 346899999999999999999999   789999999999999974  4779999999998875


Q ss_pred             CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      ...   .....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+........ .........    +..  
T Consensus       203 ~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~-~i~~~~~~~----~~~--  272 (387)
T 1kob_A          203 PDE---IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQ-NVKRCDWEF----DED--  272 (387)
T ss_dssp             TTS---CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHH-HHHHCCCCC----CSS--
T ss_pred             CCc---ceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHHHHH-HHHhCCCCC----Ccc--
Confidence            432   2245689999999999999899999999999999999999999998654432221 111110000    000  


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                          .....+.++.+++.+||+.||++|||+.|++++
T Consensus       273 ----~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h  305 (387)
T 1kob_A          273 ----AFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEH  305 (387)
T ss_dssp             ----TTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             ----ccccCCHHHHHHHHHHcCCChhHCcCHHHHhhC
Confidence                011234578899999999999999999999875

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=5.1e-43  Score=376.24  Aligned_cols=266  Identities=18%  Similarity=0.273  Sum_probs=192.5

Q ss_pred             HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      .+.|+..+.||+|+||.||+|... +|+.||||+++...   .....+.+.+|++++++++|||||++++++..++..++
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l   80 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDS---EEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTL   80 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCS---TTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEE
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeeccc---ccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEE
Confidence            456888899999999999999974 79999999995322   22345789999999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCC----CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeee
Q 003296          633 FYEYAPKGTLFDVLHGCL----ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK  708 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~----~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~  708 (833)
                      ||||++ |+|.+++....    ...+++..+..++.|+++||+|||   +.+|+||||||+||+++.++.+||+|||+++
T Consensus        81 v~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~  156 (317)
T 2pmi_A           81 VFEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCH---ENKILHRDLKPQNLLINKRGQLKLGDFGLAR  156 (317)
T ss_dssp             EEECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCSSCE
T ss_pred             EEEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCChHHeEEcCCCCEEECcCccce
Confidence            999998 59999987431    235899999999999999999999   7899999999999999999999999999998


Q ss_pred             eeCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHh--hcc-cccc-c
Q 003296          709 VIDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRN--SAQ-QDKL-D  783 (833)
Q Consensus       709 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~--~~~-~~~~-~  783 (833)
                      .......  ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+...........  ... .... .
T Consensus       157 ~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~  234 (317)
T 2pmi_A          157 AFGIPVN--TFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWP  234 (317)
T ss_dssp             ETTSCCC--CCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCG
T ss_pred             ecCCCcc--cCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhh
Confidence            7643322  2245679999999999876 468999999999999999999999998655433221111  100 0000 0


Q ss_pred             cc-----ccccccC----Cch------hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          784 HI-----LDFNVSR----TSL------AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       784 ~~-----~~~~~~~----~~~------~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .+     ..+.+..    ...      .......++.+++.+||+.||++|||++|++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~h  294 (317)
T 2pmi_A          235 SVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHH  294 (317)
T ss_dssp             GGGGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             hhhhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhCC
Confidence            00     0000000    000      000123578899999999999999999999875

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=3.1e-43  Score=369.23  Aligned_cols=253  Identities=20%  Similarity=0.264  Sum_probs=204.3

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC--CceEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS--DSAYL  632 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~--~~~~l  632 (833)
                      ++|...+.||+|+||.||+|+. +|+.||||++.....  .....+.|.+|++++++++|||||+++++|..+  +..++
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~-~~~~~avK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l   86 (271)
T 3kmu_A           10 KQLNFLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDW--STRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTL   86 (271)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECCTTC--CHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEE
T ss_pred             HHhHHHHHhcCCCcceEEEEEE-CCeeEEEEEeccccc--CHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEe
Confidence            3577789999999999999998 489999999953211  122346799999999999999999999999887  78899


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCC--eeecCCCccceeeCCCCCceeccceeeeee
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNP--ILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      ||||+++|+|.++++......+++.++..++.|+++||+|||   +.+  |+||||||+||+++.++.+|++|||++...
T Consensus        87 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~  163 (271)
T 3kmu_A           87 ITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLH---TLEPLIPRHALNSRSVMIDEDMTARISMADVKFSF  163 (271)
T ss_dssp             EEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHT---TSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTT
T ss_pred             eecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHh---cCCCceecCCCccceEEEcCCcceeEEeccceeee
Confidence            999999999999998754456999999999999999999999   666  999999999999999999999999886542


Q ss_pred             CCCCCCCccccccccccccccccccCCcccc---cCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc
Q 003296          711 DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTM---AGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (833)
                      .       .....||+.|+|||++.+..++.   ++|||||||++|||++|+.||.+.......... .....      .
T Consensus       164 ~-------~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~-~~~~~------~  229 (271)
T 3kmu_A          164 Q-------SPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKV-ALEGL------R  229 (271)
T ss_dssp             S-------CTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHHHHH-HHSCC------C
T ss_pred             c-------ccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHHHHHH-HhcCC------C
Confidence            2       13457899999999988765554   899999999999999999999755433222111 11110      0


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR  833 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r  833 (833)
                      +...      ...+.++.+++.+||+.||++|||++|+++.|++++
T Consensus       230 ~~~~------~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~  269 (271)
T 3kmu_A          230 PTIP------PGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQ  269 (271)
T ss_dssp             CCCC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred             CCCC------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhh
Confidence            0111      122346789999999999999999999999999864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.7e-41  Score=399.33  Aligned_cols=435  Identities=23%  Similarity=0.242  Sum_probs=363.3

Q ss_pred             CCCCEEECCCCCCCCcc--cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296            8 DGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL   85 (833)
Q Consensus         8 ~~L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   85 (833)
                      +++++|||++|+|+++|  +|.++++|++|||++|+|+++.+.+|.++++|++|+|++|+|+++++..|.++++|++|+|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            37999999999999986  5999999999999999999999999999999999999999999988899999999999999


Q ss_pred             cCCcCcccCCccccCCCCCCEEeccCCcCCcc-CCccccCCCCCcEEECcCCcCCCCCCcccccCCccC----ccccccc
Q 003296           86 SGNAFHGEIPKGIADYRNLTLIDLSANNLSGS-VPDRIGELSKLEVLILSANNLDGRLPTSLASITTLS----RFAANQN  160 (833)
Q Consensus        86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~l~l~~n  160 (833)
                      ++|+++++.+..|+++++|++|+|++|.+++. .|..++.+++|++|+|++|+|++..|..|..+.++.    .++++.|
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n  211 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  211 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence            99999988888999999999999999999864 578899999999999999999998888887665544    2344445


Q ss_pred             cccccCChhh----------------------------------------------------------------------
Q 003296          161 KFSGSVPGGI----------------------------------------------------------------------  170 (833)
Q Consensus       161 ~l~~~~p~~~----------------------------------------------------------------------  170 (833)
                      .+....+..+                                                                      
T Consensus       212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~  291 (635)
T 4g8a_A          212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL  291 (635)
T ss_dssp             CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred             cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence            4432221111                                                                      


Q ss_pred             -------------hhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCcc
Q 003296          171 -------------TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSA  237 (833)
Q Consensus       171 -------------~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~  237 (833)
                                   ...++.+++.+|.+...  ..+.....|+.|++++|.+.+.. ......++.+.+..|.... .  .
T Consensus       292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~L~~l~l~~n~~~~-~--~  365 (635)
T 4g8a_A          292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFP-TLKLKSLKRLTFTSNKGGN-A--F  365 (635)
T ss_dssp             CSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCC-CCBCTTCCEEEEESCCSCC-B--C
T ss_pred             cccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcC-cccchhhhhcccccccCCC-C--c
Confidence                         01133334444443332  23455678999999999987543 3344689999999987543 2  2


Q ss_pred             ccCCCCCCCEEECCCCCCCC--CCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCc-hhhcCC
Q 003296          238 TFTSLEKLTYLELDNNSFTG--MIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIP-SQFSQL  314 (833)
Q Consensus       238 ~f~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l  314 (833)
                      .+..+++|+.|++++|.+..  ..+..+..+.+|+.|++..|.+.. .+..+..++.|+.++++.|......+ ..|..+
T Consensus       366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l  444 (635)
T 4g8a_A          366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL  444 (635)
T ss_dssp             CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTC
T ss_pred             ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccc
Confidence            34578999999999999864  456667788999999999998874 45668889999999999887765544 568889


Q ss_pred             CcCceeeccCCcCcccCccccccCCCCCEEEccCCcc-ccccCccccCCCCCCEEEccCCcCCccCCCCccccc--ceee
Q 003296          315 KLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNL-NGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQ--IALN  391 (833)
Q Consensus       315 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~--~~L~  391 (833)
                      .+++.++++.|.+.+..+..+..+++|+.|+|++|++ .+..|..|..+++|++|+|++|+|++..|.....+.  +.|+
T Consensus       445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~  524 (635)
T 4g8a_A          445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  524 (635)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence            9999999999999999999999999999999999985 456788999999999999999999998887665544  6899


Q ss_pred             ccccccccchhhhhccCCCCCEEecccCcCccccchhccCC-CCCCeeeCcCCcccccC
Q 003296          392 LSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQM-PTLTQLLLTNNQLSGVV  449 (833)
Q Consensus       392 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~ls~N~l~~~~  449 (833)
                      |++|+|++..|..|.++++|++|||++|+|++..|+.+..+ ++|+.|++++|++++..
T Consensus       525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred             CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence            99999999999999999999999999999999999999988 58999999999998754

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=4.2e-43  Score=394.99  Aligned_cols=249  Identities=20%  Similarity=0.293  Sum_probs=203.7

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC-ceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD-SAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~-~~~lv  633 (833)
                      +.|+..+.||+|+||.||+|.. .|+.||||+++..      ...+.|.+|+++|++++|||||+++++|...+ ..|+|
T Consensus       193 ~~~~~~~~lG~G~fg~V~~~~~-~~~~vavK~~~~~------~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv  265 (450)
T 1k9a_A          193 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND------ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV  265 (450)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEESSC------TTSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEE
T ss_pred             HHeEEEeeecCcCCeeEEEEEe-cCCeEEEEEeCCc------hHHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEE
Confidence            4577789999999999999987 4789999999522      13578999999999999999999999988765 79999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||||++|+|.++++......+++..+..++.|+++||+|||   +.+|+||||||+|||++.++.+||+|||+++.....
T Consensus       266 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~  342 (450)
T 1k9a_A          266 TEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST  342 (450)
T ss_dssp             EECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTSCEEECCCTTCEECC--
T ss_pred             EEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEECCCCCEEEeeCCCccccccc
Confidence            99999999999998754445899999999999999999999   789999999999999999999999999999865322


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      .     ....+|+.|+|||++.+..++.++|||||||++|||+| |+.||.+..... .... .......      ..+ 
T Consensus       343 ~-----~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~-~~~~-i~~~~~~------~~p-  408 (450)
T 1k9a_A          343 Q-----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD-VVPR-VEKGYKM------DAP-  408 (450)
T ss_dssp             ---------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTT-HHHH-HHTTCCC------CCC-
T ss_pred             c-----cCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH-HHHH-HHcCCCC------CCC-
Confidence            1     23467899999999999999999999999999999998 999997533211 1111 1111100      001 


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                           ...+.++.+++.+||+.||++|||+.|+++.|+++
T Consensus       409 -----~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i  443 (450)
T 1k9a_A          409 -----DGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHI  443 (450)
T ss_dssp             -----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -----CcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence                 12345788999999999999999999999999876

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=4.5e-43  Score=372.32  Aligned_cols=264  Identities=18%  Similarity=0.231  Sum_probs=203.2

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      .|+..+.||+|+||+||+|... +|+.||||++....  ......+.+.+|++++++++|||||++++++.+++..++||
T Consensus         3 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   80 (292)
T 3o0g_A            3 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDD--DDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVF   80 (292)
T ss_dssp             SEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSC--SSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             CceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccC--CcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEE
Confidence            5777899999999999999974 78999999995322  12223467899999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++ ++.+.+... ...+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++......
T Consensus        81 e~~~~-~l~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lH---~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~  155 (292)
T 3o0g_A           81 EFCDQ-DLKKYFDSC-NGDLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPV  155 (292)
T ss_dssp             ECCSE-EHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSCC
T ss_pred             ecCCC-CHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccceecCCcc
Confidence            99975 666666543 346999999999999999999999   7899999999999999999999999999998764332


Q ss_pred             CCCccccccccccccccccccCCc-ccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccc-----ccc---
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMR-VTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL-----DHI---  785 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~-----~~~---  785 (833)
                      .  ......||+.|+|||++.+.. ++.++||||+||++|||++|..||....................     ...   
T Consensus       156 ~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  233 (292)
T 3o0g_A          156 R--CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKL  233 (292)
T ss_dssp             S--CCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGS
T ss_pred             c--cccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhccc
Confidence            2  224568999999999987765 89999999999999999999988765544433322221110000     000   


Q ss_pred             cccc-------ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          786 LDFN-------VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       786 ~~~~-------~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .+..       .............++.+++.+||+.||++|||++|+++|
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  283 (292)
T 3o0g_A          234 PDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQH  283 (292)
T ss_dssp             TTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             ccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhcC
Confidence            0000       000000011234577899999999999999999999875

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4e-43  Score=382.07  Aligned_cols=260  Identities=20%  Similarity=0.257  Sum_probs=208.0

Q ss_pred             HHhcCCccccccCcccEEEEEEc------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEec
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLA  626 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~  626 (833)
                      .++|+..+.||+|+||.||+|..      .++..||||++....   .....+.+.+|+++++++ +|||||++++++..
T Consensus        44 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~  120 (344)
T 1rjb_A           44 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA---DSSEREALMSELKMMTQLGSHENIVNLLGACTL  120 (344)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC---------CHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             HHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEeccccc---CHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEee
Confidence            45788889999999999999995      256789999995221   223457899999999999 89999999999999


Q ss_pred             CCceEEEEeeCCCCChhhhhhcCCC---------------------CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecC
Q 003296          627 SDSAYLFYEYAPKGTLFDVLHGCLE---------------------NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLD  685 (833)
Q Consensus       627 ~~~~~lv~ey~~~g~L~~~l~~~~~---------------------~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrd  685 (833)
                      .+..++||||+++|+|.+++.....                     ..++|..+..++.|++.||+|||   +.+|+|||
T Consensus       121 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~D  197 (344)
T 1rjb_A          121 SGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRD  197 (344)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH---HTTEEETT
T ss_pred             CCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCcccCC
Confidence            9999999999999999999986432                     23799999999999999999999   78999999


Q ss_pred             CCccceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccC
Q 003296          686 LSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQ  764 (833)
Q Consensus       686 lk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~  764 (833)
                      |||+||+++.++.+||+|||+++...............||+.|+|||++.+..++.++|||||||++|||+| |+.||.+
T Consensus       198 ikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~  277 (344)
T 1rjb_A          198 LAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPG  277 (344)
T ss_dssp             CSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTT
T ss_pred             CChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCccc
Confidence            999999999999999999999987654333222344678899999999988889999999999999999998 9999975


Q ss_pred             CccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          765 GNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .......... ......      ....      ...+.++.+++.+||+.||++|||+.|++++|+.+
T Consensus       278 ~~~~~~~~~~-~~~~~~------~~~~------~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~  332 (344)
T 1rjb_A          278 IPVDANFYKL-IQNGFK------MDQP------FYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQ  332 (344)
T ss_dssp             CCCSHHHHHH-HHTTCC------CCCC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CCcHHHHHHH-HhcCCC------CCCC------CCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHH
Confidence            4432221111 111000      0000      11234678999999999999999999999999864

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=1.5e-42  Score=367.38  Aligned_cols=255  Identities=21%  Similarity=0.328  Sum_probs=202.0

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhh---hccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIF---QLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~---~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      +.|+..+.||+|+||.||+|+. .+++.||||++.......   .....+.|.+|++++++++|||||++++++.+..  
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--   96 (287)
T 4f0f_A           19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP--   96 (287)
T ss_dssp             TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--
T ss_pred             ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--
Confidence            4577789999999999999997 589999999985322111   1122378999999999999999999999987654  


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCC--eeecCCCccceeeCCCCC-----ceecc
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNP--ILLLDLSTRNIFLKSLKE-----PQIGD  703 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~Nill~~~~~-----~ki~d  703 (833)
                      ++||||+++|+|.+++... ...+++..+..++.|++.||+|||   +.+  |+||||||+||+++.++.     +||+|
T Consensus        97 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~l~~~l~~lH---~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~D  172 (287)
T 4f0f_A           97 RMVMEFVPCGDLYHRLLDK-AHPIKWSVKLRLMLDIALGIEYMQ---NQNPPIVHRDLRSPNIFLQSLDENAPVCAKVAD  172 (287)
T ss_dssp             EEEEECCTTCBHHHHHHCT-TSCCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCSCCSGGGEEESCCCTTCSCCEEECC
T ss_pred             eEEEEecCCCCHHHHHhcc-cCCccHHHHHHHHHHHHHHHHHHH---hCCCCeecCCCCcceEEEeccCCCCceeEEeCC
Confidence            7999999999999988753 346999999999999999999999   667  999999999999988776     99999


Q ss_pred             ceeeeeeCCCCCCCcccccccccccccccccc--CCcccccCcchhhHHHHHHHHhCCCcccCCccHH-HHHHHhhcccc
Q 003296          704 IELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY--TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELA-KWVLRNSAQQD  780 (833)
Q Consensus       704 fgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~--~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~-~~~~~~~~~~~  780 (833)
                      ||+++....     ......||+.|+|||++.  ...++.++||||+||++|||++|+.||....... .+....... .
T Consensus       173 fg~~~~~~~-----~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~-~  246 (287)
T 4f0f_A          173 FGLSQQSVH-----SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREE-G  246 (287)
T ss_dssp             CTTCBCCSS-----CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHS-C
T ss_pred             CCccccccc-----cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhcc-C
Confidence            999975432     224568999999999983  5568899999999999999999999997543221 111111111 1


Q ss_pred             cccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          781 KLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       781 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                       ..    +...      ...+.++.+++.+||+.||++|||++|+++.|+++
T Consensus       247 -~~----~~~~------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l  287 (287)
T 4f0f_A          247 -LR----PTIP------EDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL  287 (287)
T ss_dssp             -CC----CCCC------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred             -CC----CCCC------cccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence             00    1111      12235688999999999999999999999999875

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=2.1e-43  Score=398.23  Aligned_cols=255  Identities=19%  Similarity=0.275  Sum_probs=207.8

Q ss_pred             HHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      .+.|+..+.||+|+||.||+|...++..||||+++..     ....++|.+|+++|++++|||||++++++. .+..++|
T Consensus       187 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~-----~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv  260 (454)
T 1qcf_A          187 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG-----SMSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYII  260 (454)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTT-----SBCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEE
T ss_pred             hHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCC-----CccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEE
Confidence            3567788999999999999999988999999999532     134678999999999999999999999986 6678999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||||++|+|.++++......+++.++..++.|+|+||+|||   +.+|+||||||+|||++.++.+||+|||+++.....
T Consensus       261 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~  337 (454)
T 1qcf_A          261 TEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDN  337 (454)
T ss_dssp             ECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCH
T ss_pred             EeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCC
Confidence            99999999999998543346899999999999999999999   778999999999999999999999999999876432


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      ... ......+|+.|+|||++....++.++|||||||++|||+| |+.||.+.... +..... ......        ..
T Consensus       338 ~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~-~~~~~i-~~~~~~--------~~  406 (454)
T 1qcf_A          338 EYT-AREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNP-EVIRAL-ERGYRM--------PR  406 (454)
T ss_dssp             HHH-TTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH-HHHHHH-HHTCCC--------CC
T ss_pred             cee-ccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHH-HHHHHH-HcCCCC--------CC
Confidence            111 1123457889999999988889999999999999999999 99999754332 211111 111110        00


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                          +...+.++.+++.+||+.||++|||+++|++.|+++
T Consensus       407 ----~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~  442 (454)
T 1qcf_A          407 ----PENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDF  442 (454)
T ss_dssp             ----CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred             ----CCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHH
Confidence                012345788999999999999999999999999875

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=2.9e-43  Score=379.09  Aligned_cols=245  Identities=18%  Similarity=0.227  Sum_probs=182.3

Q ss_pred             ccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCCceEEEEeeC
Q 003296          560 LNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASDSAYLFYEYA  637 (833)
Q Consensus       560 ~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~~~~lv~ey~  637 (833)
                      .+.||+|+||.||+|... +|+.||||++...       ....+.+|++++++++ |||||+++++|.+++..|+|||||
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-------~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~   88 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR-------MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELL   88 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG-------GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEEChh-------hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEcc
Confidence            378999999999999974 7999999999421       2457889999999997 999999999999999999999999


Q ss_pred             CCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC---CceeccceeeeeeCCCC
Q 003296          638 PKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK---EPQIGDIELCKVIDPSK  714 (833)
Q Consensus       638 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~---~~ki~dfgl~~~~~~~~  714 (833)
                      ++|+|.+++..  ...+++.++..++.|++.||+|||   +.+|+||||||+||+++.++   .+||+|||+++......
T Consensus        89 ~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~  163 (325)
T 3kn6_A           89 NGGELFERIKK--KKHFSETEASYIMRKLVSAVSHMH---DVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDN  163 (325)
T ss_dssp             CSCBHHHHHHH--CSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC--
T ss_pred             CCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCC
Confidence            99999999986  456999999999999999999999   78999999999999997665   79999999998765332


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc------HHHHHHHhhcccccccccccc
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE------LAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~------~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      .  .....+||+.|+|||++.+..++.++|||||||++|||++|+.||.....      ..+....          +...
T Consensus       164 ~--~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~----------i~~~  231 (325)
T 3kn6_A          164 Q--PLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKK----------IKKG  231 (325)
T ss_dssp             ----------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHH----------HTTT
T ss_pred             C--cccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHH----------HHcC
Confidence            2  23456799999999999998999999999999999999999999974322      1111111          1111


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ........+...+.++.+++.+||+.||++|||++|+++|
T Consensus       232 ~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h  271 (325)
T 3kn6_A          232 DFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYN  271 (325)
T ss_dssp             CCCCCSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTTC
T ss_pred             CCCCCcccccCCCHHHHHHHHHHCCCChhHCCCHHHHhcC
Confidence            1111222233456678899999999999999999998754

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=8e-43  Score=368.63  Aligned_cols=254  Identities=17%  Similarity=0.224  Sum_probs=205.0

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      ++|+..+.||+|+||.||+|...++..||||++...     ....++|.+|++++++++|||||+++++|..++..++||
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~-----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   98 (283)
T 3gen_A           24 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-----SMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIIT   98 (283)
T ss_dssp             GGEEEEEECC---CEEEEEEEETTTEEEEEEEECTT-----SBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEE
T ss_pred             HHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCC-----CCCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEE
Confidence            467788999999999999999988999999999422     123467999999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.+++... ...+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++......
T Consensus        99 e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~  174 (283)
T 3gen_A           99 EYMANGCLLNYLREM-RHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE  174 (283)
T ss_dssp             CCCTTCBHHHHHHCG-GGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHH
T ss_pred             eccCCCcHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCccceEEEcCCCCEEEccccccccccccc
Confidence            999999999999753 235999999999999999999999   7899999999999999999999999999998654321


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      . .......||+.|+|||++.+..++.++||||+||++|||+| |+.||......... ...... .  ..    .... 
T Consensus       175 ~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~-~~~~~~-~--~~----~~~~-  244 (283)
T 3gen_A          175 Y-TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETA-EHIAQG-L--RL----YRPH-  244 (283)
T ss_dssp             H-HSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHH-HHHHTT-C--CC----CCCT-
T ss_pred             c-ccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHHH-HHHhcc-c--CC----CCCC-
Confidence            1 11234567889999999998889999999999999999998 99999754432211 111111 0  00    0000 


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                           ..+..+.+++.+||+.||++|||++|++++|+++
T Consensus       245 -----~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~  278 (283)
T 3gen_A          245 -----LASEKVYTIMYSCWHEKADERPTFKILLSNILDV  278 (283)
T ss_dssp             -----TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -----cCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHH
Confidence                 1134678999999999999999999999999875

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=5.8e-43  Score=382.46  Aligned_cols=250  Identities=21%  Similarity=0.211  Sum_probs=193.9

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHH-HhcCCCCCcccceEEEecCCceEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEV-LGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~-l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      ++|+..+.||+|+||.||+|+.. +++.||||+++.. ........+.+.+|..+ ++.++|||||+++++|.+.+..|+
T Consensus        38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~-~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l  116 (373)
T 2r5t_A           38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKK-AILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF  116 (373)
T ss_dssp             GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGG-GBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred             hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHH-HhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence            56888999999999999999974 6899999999532 22223344567788887 577999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||||+++|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||+++....
T Consensus       117 v~E~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~  191 (373)
T 2r5t_A          117 VLDYINGGELFYHLQR--ERCFLEPRARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIE  191 (373)
T ss_dssp             EEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBC
T ss_pred             EEeCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEeeCcccccccc
Confidence            9999999999999986  346899999999999999999999   78999999999999999999999999999986432


Q ss_pred             CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      ...  .....+||+.|+|||++.+..|+.++|||||||++|||++|+.||.+......+ .........        +..
T Consensus       192 ~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~-~~i~~~~~~--------~~~  260 (373)
T 2r5t_A          192 HNS--TTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMY-DNILNKPLQ--------LKP  260 (373)
T ss_dssp             CCC--CCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHHHH-HHHHHSCCC--------CCS
T ss_pred             CCC--ccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHH-HHHHhcccC--------CCC
Confidence            221  235678999999999999989999999999999999999999999765432222 111111000        111


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLR  827 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~  827 (833)
                            ....++.+++.+||+.||++||++.+.+.
T Consensus       261 ------~~~~~~~~li~~lL~~dp~~R~~~~~~~~  289 (373)
T 2r5t_A          261 ------NITNSARHLLEGLLQKDRTKRLGAKDDFM  289 (373)
T ss_dssp             ------SSCHHHHHHHHHHTCSSGGGSTTTTTTHH
T ss_pred             ------CCCHHHHHHHHHHcccCHHhCCCCCCCHH
Confidence                  12346789999999999999999854333

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=1.1e-42  Score=374.53  Aligned_cols=257  Identities=18%  Similarity=0.221  Sum_probs=209.2

Q ss_pred             HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhh--ccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQ--LGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS  629 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~  629 (833)
                      ..+.|+..+.||+|+||.||+|... +|+.||||++........  ....++|.+|++++++++|||||++++++..++.
T Consensus        10 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   89 (321)
T 2a2a_A           10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTD   89 (321)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             hhccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCE
Confidence            4567899999999999999999974 799999999953321111  1235789999999999999999999999999999


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC----Cceeccce
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK----EPQIGDIE  705 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~----~~ki~dfg  705 (833)
                      .++||||+++|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+||+++.++    .+|++|||
T Consensus        90 ~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~lH---~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg  164 (321)
T 2a2a_A           90 VVLILELVSGGELFDFLAQ--KESLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFG  164 (321)
T ss_dssp             EEEEECCCCSCBHHHHHHT--CSCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCT
T ss_pred             EEEEEEcCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCChHHEEEecCCCCcCCEEEccCc
Confidence            9999999999999999986  456899999999999999999999   78999999999999999887    79999999


Q ss_pred             eeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccc
Q 003296          706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHI  785 (833)
Q Consensus       706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~  785 (833)
                      +++......   ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+........ ........    
T Consensus       165 ~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~-~i~~~~~~----  236 (321)
T 2a2a_A          165 LAHEIEDGV---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLA-NITSVSYD----  236 (321)
T ss_dssp             TCEECCTTC---CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHH-HHHTTCCC----
T ss_pred             cceecCccc---cccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHHHHH-HHHhcccc----
Confidence            998765432   2245679999999999998899999999999999999999999997544322221 11111000    


Q ss_pred             ccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          786 LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       786 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                            .........+..+.+++.+||+.||++|||+.|+++|
T Consensus       237 ------~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~h  273 (321)
T 2a2a_A          237 ------FDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALRH  273 (321)
T ss_dssp             ------CCHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHHS
T ss_pred             ------cChhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence                  0011111234568899999999999999999999875

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-42  Score=371.97  Aligned_cols=252  Identities=21%  Similarity=0.328  Sum_probs=195.7

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      ++|+..+.||+|+||.||+|.. .++.||||++...      ...+.|.+|++++++++|||||++++++.  +..++||
T Consensus         8 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~   78 (307)
T 2eva_A            8 KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESE------SERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVM   78 (307)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEECSST------THHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEE
T ss_pred             hHeeeeeEeecCCCceEEEEEE-CCeeEEEEEecCh------hHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEE
Confidence            3577789999999999999987 4789999999421      23468999999999999999999999887  4589999


Q ss_pred             eeCCCCChhhhhhcCCC-CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC-ceeccceeeeeeCC
Q 003296          635 EYAPKGTLFDVLHGCLE-NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE-PQIGDIELCKVIDP  712 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~-~ki~dfgl~~~~~~  712 (833)
                      ||+++|+|.++++.... ..+++..++.++.|+++||+|||+....+|+||||||+||+++.++. +||+|||+++....
T Consensus        79 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~  158 (307)
T 2eva_A           79 EYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQT  158 (307)
T ss_dssp             ECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC------
T ss_pred             EcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccccccccc
Confidence            99999999999986432 24789999999999999999999543378999999999999998886 79999999976532


Q ss_pred             CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      .     .....||+.|+|||++.+..++.++|||||||++|||+||+.||................... .     ... 
T Consensus       159 ~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~-~-----~~~-  226 (307)
T 2eva_A          159 H-----MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTR-P-----PLI-  226 (307)
T ss_dssp             -----------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTCC-C-----CCB-
T ss_pred             c-----cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCCC-C-----Ccc-
Confidence            2     134579999999999999899999999999999999999999997533221111111111000 0     000 


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                           ...+..+.+++.+||+.||++|||++|++++|+++
T Consensus       227 -----~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~  261 (307)
T 2eva_A          227 -----KNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHL  261 (307)
T ss_dssp             -----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -----cccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence                 11234678999999999999999999999999875

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=7.1e-43  Score=376.62  Aligned_cols=256  Identities=22%  Similarity=0.290  Sum_probs=200.7

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCce----EEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMS----YFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS  629 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~----vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~  629 (833)
                      +.|+..+.||+|+||.||+|+. .+|+.    ||+|.+...   ......+.+.+|+.++++++|||||+++++|. .+.
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~---~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~   88 (325)
T 3kex_A           13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDK---SGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSS   88 (325)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCT---TSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSS
T ss_pred             hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEecccc---ccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCc
Confidence            3567788999999999999996 45555    777777322   12234467889999999999999999999986 567


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                      .++||||+++|+|.+++... ...+++..+..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||+++.
T Consensus        89 ~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~  164 (325)
T 3kex_A           89 LQLVTQYLPLGSLLDHVRQH-RGALGPQLLLNWGVQIAKGMYYLE---EHGMVHRNLAARNVLLKSPSQVQVADFGVADL  164 (325)
T ss_dssp             EEEEEECCTTCBSHHHHHSS-GGGSCTTHHHHHHHHHHHHHHHHH---HTTCCCSCCSSTTEEESSSSCEEECSCSGGGG
T ss_pred             cEEEEEeCCCCCHHHHHHHc-cccCCHHHHHHHHHHHHHHHHHHH---hCCCCCCccchheEEECCCCeEEECCCCcccc
Confidence            89999999999999999853 346899999999999999999999   77899999999999999999999999999987


Q ss_pred             eCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ..............||+.|+|||++.+..++.++|||||||++|||+| |+.||.+...... .... .......   . 
T Consensus       165 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~-~~~~-~~~~~~~---~-  238 (325)
T 3kex_A          165 LPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEV-PDLL-EKGERLA---Q-  238 (325)
T ss_dssp             SCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHH-HHHH-HTTCBCC---C-
T ss_pred             cCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHH-HHHH-HcCCCCC---C-
Confidence            754443333345678899999999998899999999999999999999 9999975432211 1111 1101000   0 


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                        ..      ..+.++.+++.+||+.||++|||++|++++|+++
T Consensus       239 --~~------~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~  274 (325)
T 3kex_A          239 --PQ------ICTIDVYMVMVKCWMIDENIRPTFKELANEFTRM  274 (325)
T ss_dssp             --CT------TBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHH
T ss_pred             --CC------cCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence              00      1123567899999999999999999999999865

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=3.9e-43  Score=376.79  Aligned_cols=259  Identities=22%  Similarity=0.291  Sum_probs=209.5

Q ss_pred             HhcCCccccccCcccEEEEEEc------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecC
Q 003296          555 AVANPLNVELKTRFSTYYKAVM------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLAS  627 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~  627 (833)
                      +.|...+.||+|+||.||+|+.      .+++.||||++.....   ....+.+.+|+++++++ +|||||+++++|..+
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   99 (313)
T 1t46_A           23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAH---LTEREALMSELKVLSYLGNHMNIVNLLGACTIG   99 (313)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC---HHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             hhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchh---HHHHHHHHHHHHHHhhcccCCCeeeEEEEEecC
Confidence            4677889999999999999984      3678999999953221   12347899999999999 999999999999999


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCC----------------CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccce
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLE----------------NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNI  691 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~----------------~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Ni  691 (833)
                      +..++||||+++|+|.+++.....                ..+++.++..++.|+++||+|||   +.+|+||||||+||
T Consensus       100 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Ni  176 (313)
T 1t46_A          100 GPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNI  176 (313)
T ss_dssp             SSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGE
T ss_pred             CCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCccceE
Confidence            999999999999999999986432                24899999999999999999999   78999999999999


Q ss_pred             eeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHH
Q 003296          692 FLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAK  770 (833)
Q Consensus       692 ll~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~  770 (833)
                      +++.++.+|++|||+++...............||+.|+|||++.+..++.++|||||||++|||+| |+.||.+......
T Consensus       177 l~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~  256 (313)
T 1t46_A          177 LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSK  256 (313)
T ss_dssp             EEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHH
T ss_pred             EEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhH
Confidence            999999999999999987654433222334568899999999988889999999999999999999 9999975443222


Q ss_pred             HHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          771 WVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ........   ....    ..      ...+.++.+++.+||+.||++|||+.|++++|+++
T Consensus       257 ~~~~~~~~---~~~~----~~------~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~  305 (313)
T 1t46_A          257 FYKMIKEG---FRML----SP------EHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQ  305 (313)
T ss_dssp             HHHHHHHT---CCCC----CC------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHhccC---CCCC----Cc------ccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHH
Confidence            21111110   0000    00      11234678999999999999999999999999874

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=7.9e-43  Score=386.22  Aligned_cols=266  Identities=14%  Similarity=0.171  Sum_probs=205.6

Q ss_pred             HhcCCccccccC--cccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296          555 AVANPLNVELKT--RFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       555 ~~~~~~~~ig~g--~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~  631 (833)
                      ..|+..+.||+|  +||.||+|+.. +|+.||||++.....  .....+.+.+|++++++++|||||+++++|..++..|
T Consensus        25 ~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~  102 (389)
T 3gni_B           25 GCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEAC--SNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELW  102 (389)
T ss_dssp             GGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGS--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred             CcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEeccccc--ChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEE
Confidence            467888999999  99999999975 799999999953211  1223467889999999999999999999999999999


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      +|||||++|+|.+++.......+++..+..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||.+....
T Consensus       103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~  179 (389)
T 3gni_B          103 VVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIH---HMGYVHRSVKASHILISVDGKVYLSGLRSNLSMI  179 (389)
T ss_dssp             EEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCGGGCEECE
T ss_pred             EEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEcccccceeec
Confidence            9999999999999998754567999999999999999999999   7889999999999999999999999999986543


Q ss_pred             CCCC-----CCccccccccccccccccccC--CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccc
Q 003296          712 PSKS-----TGSLSTVAGSVGYIPPEYAYT--MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDH  784 (833)
Q Consensus       712 ~~~~-----~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~  784 (833)
                      ....     .......+||+.|+|||++.+  ..++.++|||||||++|||++|+.||.+..............   ...
T Consensus       180 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~---~~~  256 (389)
T 3gni_B          180 SHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGT---VPC  256 (389)
T ss_dssp             ETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC----------
T ss_pred             cccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCC---CCc
Confidence            2111     111233579999999999987  579999999999999999999999997544332221111000   000


Q ss_pred             ccccc---------------------------cc-------CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          785 ILDFN---------------------------VS-------RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       785 ~~~~~---------------------------~~-------~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ..+..                           ..       ...........++.+++.+||+.||++|||++|+++|
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~h  334 (389)
T 3gni_B          257 LLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNH  334 (389)
T ss_dssp             -------------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred             cccccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcC
Confidence            00000                           00       0000112234578899999999999999999999876

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=6.1e-44  Score=379.61  Aligned_cols=267  Identities=21%  Similarity=0.296  Sum_probs=201.9

Q ss_pred             HhcCCccccccCcccEEEEEEc-----CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC--
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS--  627 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~--  627 (833)
                      +.|+..+.||+|+||.||+|+.     .+|+.||||++.....    ...+.|.+|++++++++|||||+++++|...  
T Consensus        10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~----~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   85 (295)
T 3ugc_A           10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNIVKYKGVCYSAGR   85 (295)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCH----HHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHH
T ss_pred             HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCH----HHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCC
Confidence            4677889999999999999983     3789999999953221    2346799999999999999999999999754  


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                      ...++||||+++|+|.+++... ...+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||++
T Consensus        86 ~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~  161 (295)
T 3ugc_A           86 RNLKLIMEYLPYGSLRDYLQKH-KERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLT  161 (295)
T ss_dssp             TSCEEEEECCTTCBHHHHHHHC-GGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCSC
T ss_pred             CceEEEEEeCCCCCHHHHHHhc-ccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHhhEEEcCCCeEEEccCccc
Confidence            5689999999999999999864 235899999999999999999999   789999999999999999999999999999


Q ss_pred             eeeCCCCCC-CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc------
Q 003296          708 KVIDPSKST-GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD------  780 (833)
Q Consensus       708 ~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~------  780 (833)
                      +........ .......||+.|+|||++.+..++.++|||||||++|||+||..|+.....  .+.........      
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~  239 (295)
T 3ugc_A          162 KVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA--EFMRMIGNDKQGQMIVF  239 (295)
T ss_dssp             C-------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHH--HHHHHHCTTCCTHHHHH
T ss_pred             ccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChH--HHHhhhcCccccchhHH
Confidence            876433221 112345678889999999988999999999999999999999999863211  11100000000      


Q ss_pred             cccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296          781 KLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR  833 (833)
Q Consensus       781 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r  833 (833)
                      .....+.......  .....+.++.+++.+||+.||++|||++|++++|++++
T Consensus       240 ~~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~  290 (295)
T 3ugc_A          240 HLIELLKNNGRLP--RPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR  290 (295)
T ss_dssp             HHHHHHHTTCCCC--CCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHhccCcCC--CCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence            0000000000000  01123457889999999999999999999999998864

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=5.4e-43  Score=387.56  Aligned_cols=245  Identities=16%  Similarity=0.141  Sum_probs=190.8

Q ss_pred             hcCCc-cccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhc-CCCCCcccceEEEec----CC
Q 003296          556 VANPL-NVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGK-LSNSNVMTPLAYVLA----SD  628 (833)
Q Consensus       556 ~~~~~-~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~-l~H~niv~~~~~~~~----~~  628 (833)
                      +|... ++||+|+||+||+|... +|+.||||++..         ...+.+|++++.+ .+|||||+++++|..    .+
T Consensus        62 ~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~---------~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~  132 (400)
T 1nxk_A           62 DYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD---------CPKARREVELHWRASQCPHIVRIVDVYENLYAGRK  132 (400)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC---------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred             cceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc---------chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCc
Confidence            45554 68999999999999974 789999999941         2467889998754 589999999999875    56


Q ss_pred             ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC---CCCceeccce
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS---LKEPQIGDIE  705 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~---~~~~ki~dfg  705 (833)
                      ..|+|||||++|+|.+++.......+++.++..|+.|++.||+|||   +.+|+||||||+|||++.   ++.+||+|||
T Consensus       133 ~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG  209 (400)
T 1nxk_A          133 CLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFG  209 (400)
T ss_dssp             EEEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSTTCCEEECCCT
T ss_pred             EEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCcceEEEecCCCCccEEEEecc
Confidence            7899999999999999998754456999999999999999999999   789999999999999997   7899999999


Q ss_pred             eeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccH------HHHHHHhhccc
Q 003296          706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNEL------AKWVLRNSAQQ  779 (833)
Q Consensus       706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~------~~~~~~~~~~~  779 (833)
                      +++......   .....+||+.|+|||++.+..|+.++|||||||++|||++|+.||.+....      ...+..   . 
T Consensus       210 ~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~---~-  282 (400)
T 1nxk_A          210 FAKETTSHN---SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRM---G-  282 (400)
T ss_dssp             TCEECC--------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHH---T-
T ss_pred             cccccCCCC---ccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHc---C-
Confidence            998764322   234678999999999999999999999999999999999999999754321      111110   0 


Q ss_pred             ccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          780 DKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                               ........+...+.++.+++.+||+.||++|||+.|+++|
T Consensus       283 ---------~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h  322 (400)
T 1nxk_A          283 ---------QYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH  322 (400)
T ss_dssp             ---------CCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             ---------cccCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence                     0000000111234578899999999999999999999986

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=4.5e-43  Score=394.90  Aligned_cols=251  Identities=19%  Similarity=0.209  Sum_probs=196.6

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||.||+|.. .+|+.||||++. ............+.+|++++++++|||||+++++|...+..|+|
T Consensus       148 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~-~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  226 (446)
T 4ejn_A          148 NEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILK-KEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV  226 (446)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEE-HHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred             HHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEE-hhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence            5688899999999999999996 579999999994 22222233456788999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCC-CCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTS-NPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~-~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||||++|+|.+++..  ...+++..+..++.|+++||+|||   + .+|+||||||+|||++.++.+||+|||+|+....
T Consensus       227 ~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH---~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~  301 (446)
T 4ejn_A          227 MEYANGGELFFHLSR--ERVFSEDRARFYGAEIVSALDYLH---SEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIK  301 (446)
T ss_dssp             ECCCSSCBHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC
T ss_pred             EeeCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHh---hcCCEEECCCCHHHEEECCCCCEEEccCCCceeccC
Confidence            999999999999976  346899999999999999999999   5 7899999999999999999999999999985432


Q ss_pred             CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      ..  ......+||+.|||||++.+..|+.++|||||||++|||++|+.||.+..... ...........        .+.
T Consensus       302 ~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~-~~~~i~~~~~~--------~p~  370 (446)
T 4ejn_A          302 DG--ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK-LFELILMEEIR--------FPR  370 (446)
T ss_dssp             -------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCCCC--------CCT
T ss_pred             CC--cccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHH-HHHHHHhCCCC--------CCc
Confidence            22  12346789999999999999999999999999999999999999997544322 22111111111        111


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARP-----KMKSVLRM  828 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~  828 (833)
                            ....++.+++.+||+.||++||     +++|+++|
T Consensus       371 ------~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~h  405 (446)
T 4ejn_A          371 ------TLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQH  405 (446)
T ss_dssp             ------TSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred             ------cCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHhC
Confidence                  1234678999999999999999     99999875

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=5.7e-43  Score=397.58  Aligned_cols=254  Identities=17%  Similarity=0.204  Sum_probs=207.2

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|...++||+|+||.||+|+.. +|+.||||++. +.........+.+.+|++++++++|||||+++++|...+..|+|
T Consensus       185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~-k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV  263 (543)
T 3c4z_A          185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLN-KKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV  263 (543)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEE-HHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEE-hHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence            45777789999999999999974 79999999994 33333344567899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCC--CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          634 YEYAPKGTLFDVLHGCL--ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      ||||++|+|.+++....  ...+++..+..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||+++...
T Consensus       264 mE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH---~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~  340 (543)
T 3c4z_A          264 MTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELK  340 (543)
T ss_dssp             ECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred             EEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHH---HcCCcccCCChHHEEEeCCCCEEEeecceeeecc
Confidence            99999999999997643  346999999999999999999999   7899999999999999999999999999998875


Q ss_pred             CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc---HHHHHHHhhcccccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE---LAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ....  .....+||+.|||||++.+..|+.++|||||||++|||+||+.||.+...   ...........          
T Consensus       341 ~~~~--~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~----------  408 (543)
T 3c4z_A          341 AGQT--KTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQ----------  408 (543)
T ss_dssp             TTCC--CBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHC----------
T ss_pred             CCCc--ccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhc----------
Confidence            4332  22456899999999999999999999999999999999999999975432   12222111111          


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCH-----HHHHHH
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKM-----KSVLRM  828 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~-----~evl~~  828 (833)
                      ....+    ...+.++.+++.+||+.||++||++     +||++|
T Consensus       409 ~~~~p----~~~s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~H  449 (543)
T 3c4z_A          409 AVTYP----DKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRTH  449 (543)
T ss_dssp             CCCCC----TTSCHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHTS
T ss_pred             ccCCC----cccCHHHHHHHHHhccCCHhHCCCCcccCHHHHHcC
Confidence            00000    1224567899999999999999975     666653

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=6.9e-43  Score=376.64  Aligned_cols=260  Identities=19%  Similarity=0.216  Sum_probs=193.0

Q ss_pred             HHhcCCccccccCcccEEEEEEcCC-C---ceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMPS-G---MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS  629 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~~-~---~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~  629 (833)
                      .+.|+..+.||+|+||.||+|.... +   ..||||+++...  ......+.|.+|++++++++|||||++++++...+.
T Consensus        22 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   99 (323)
T 3qup_A           22 EQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADI--IASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRA   99 (323)
T ss_dssp             ---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC--------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC--
T ss_pred             hhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccc--cCHHHHHHHHHHHHHHHHCCCCceehhhceeecccc
Confidence            4568888999999999999999753 3   379999994321  122235789999999999999999999999988765


Q ss_pred             e------EEEEeeCCCCChhhhhhcCC----CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCc
Q 003296          630 A------YLFYEYAPKGTLFDVLHGCL----ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEP  699 (833)
Q Consensus       630 ~------~lv~ey~~~g~L~~~l~~~~----~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~  699 (833)
                      .      ++||||+++|+|.+++....    ...+++.++..++.|+++||+|||   +.+|+||||||+||++++++.+
T Consensus       100 ~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~ivH~Dikp~NIli~~~~~~  176 (323)
T 3qup_A          100 KGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLS---SRNFIHRDLAARNCMLAEDMTV  176 (323)
T ss_dssp             -----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCE
T ss_pred             ccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHH---cCCcccCCCCcceEEEcCCCCE
Confidence            5      99999999999999996422    125899999999999999999999   7899999999999999999999


Q ss_pred             eeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcc
Q 003296          700 QIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQ  778 (833)
Q Consensus       700 ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~  778 (833)
                      ||+|||+++...............||+.|+|||++.+..++.++|||||||++|||++ |+.||.+......+..... .
T Consensus       177 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~-~  255 (323)
T 3qup_A          177 CVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIYNYLIG-G  255 (323)
T ss_dssp             EECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHT-T
T ss_pred             EEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHHHHHHhc-C
Confidence            9999999987654332222334567889999999998889999999999999999999 9999975443322211111 0


Q ss_pred             cccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          779 QDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                       ...      ..      ....+.++.+++.+||+.||++|||+.|+++.|+++
T Consensus       256 -~~~------~~------~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~  296 (323)
T 3qup_A          256 -NRL------KQ------PPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENI  296 (323)
T ss_dssp             -CCC------CC------CTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -CCC------CC------CCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence             000      00      012234688999999999999999999999999875

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=1e-42  Score=372.51  Aligned_cols=270  Identities=19%  Similarity=0.159  Sum_probs=205.1

Q ss_pred             HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchh-hhccChhHHHHHHHHHhcCC---CCCcccceEEEec
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKI-FQLGSHHKFDKELEVLGKLS---NSNVMTPLAYVLA  626 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~-~~~~~~~~~~~E~~~l~~l~---H~niv~~~~~~~~  626 (833)
                      ...+.|+..+.||+|+||+||+|+. .+|+.||||++...... ........+.+|++++++++   |||||+++++|..
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~   85 (308)
T 3g33_A            6 MATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCAT   85 (308)
T ss_dssp             ----CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEE
T ss_pred             ccccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeec
Confidence            4467899999999999999999997 57999999998522211 11223457888998888775   9999999999987


Q ss_pred             CC-----ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCcee
Q 003296          627 SD-----SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQI  701 (833)
Q Consensus       627 ~~-----~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki  701 (833)
                      ..     ..++||||++ |+|.+++.......+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.+||
T Consensus        86 ~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl  161 (308)
T 3g33_A           86 SRTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLH---ANCIVHRDLKPENILVTSGGTVKL  161 (308)
T ss_dssp             CCSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCTTTEEECTTSCEEE
T ss_pred             cCCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCEEE
Confidence            65     4899999997 59999998755556999999999999999999999   778999999999999999999999


Q ss_pred             ccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccc
Q 003296          702 GDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDK  781 (833)
Q Consensus       702 ~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~  781 (833)
                      +|||+++......   .....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+.................
T Consensus       162 ~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~  238 (308)
T 3g33_A          162 ADFGLARIYSYQM---ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLP  238 (308)
T ss_dssp             CSCSCTTTSTTCC---CSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCC
T ss_pred             eeCccccccCCCc---ccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCC
Confidence            9999998654332   2345789999999999998899999999999999999999999998655433322111110000


Q ss_pred             ccccc-------ccccc----CC-chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          782 LDHIL-------DFNVS----RT-SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       782 ~~~~~-------~~~~~----~~-~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .....       .....    .. .........++.+++.+||+.||++|||+.|+++|
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  297 (308)
T 3g33_A          239 PEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQH  297 (308)
T ss_dssp             CTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             ChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcC
Confidence            00000       00000    00 00011234578899999999999999999999875

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=2.8e-42  Score=363.65  Aligned_cols=249  Identities=22%  Similarity=0.311  Sum_probs=202.9

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||.||+|... ++..||||++. ..........+.+.+|++++++++||||++++++|.+.+..++|
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~-~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   87 (279)
T 3fdn_A            9 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLF-KAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI   87 (279)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEE-HHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEe-ccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence            56888899999999999999874 67899999984 32323334567899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||++......
T Consensus        88 ~e~~~~~~l~~~l~~--~~~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~  162 (279)
T 3fdn_A           88 LEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS  162 (279)
T ss_dssp             ECCCTTEEHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---TTTCEECCCCGGGEEECTTSCEEECSCCEESCC---
T ss_pred             EecCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCEecccCChHhEEEcCCCCEEEEeccccccCCcc
Confidence            999999999999976  346899999999999999999999   789999999999999999999999999998654322


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      .    .....||+.|+|||++.+..++.++|||||||++|||++|+.||........+... .....        ..+. 
T Consensus       163 ~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~-~~~~~--------~~~~-  228 (279)
T 3fdn_A          163 R----RTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRI-SRVEF--------TFPD-  228 (279)
T ss_dssp             ---------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHH-HHTCC--------CCCT-
T ss_pred             c----ccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHHHHHHH-HhCCC--------CCCC-
Confidence            2    23467999999999999888999999999999999999999999754432222111 11100        0110 


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                           ....++.+++.+||+.||++|||++|+++|
T Consensus       229 -----~~~~~~~~li~~~l~~~p~~Rps~~e~l~h  258 (279)
T 3fdn_A          229 -----FVTEGARDLISRLLKHNPSQRPMLREVLEH  258 (279)
T ss_dssp             -----TSCHHHHHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred             -----cCCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence                 123467799999999999999999999976

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=1.4e-42  Score=391.05  Aligned_cols=261  Identities=18%  Similarity=0.161  Sum_probs=199.5

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC-----
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD-----  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~-----  628 (833)
                      +.|+..+.||+|+||.||+|.. .+|+.||||++...  .......+.+.+|+++|++++|||||++++++...+     
T Consensus        62 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~--~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~  139 (464)
T 3ttj_A           62 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRP--FQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF  139 (464)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESG--GGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred             CCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECcc--ccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccC
Confidence            4678889999999999999986 47999999999532  112233567899999999999999999999997653     


Q ss_pred             -ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          629 -SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       629 -~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                       ..|+|||||++ ++.+.+..    .+++.++..++.|+++||+|||   +.+|+||||||+|||++.++.+||+|||+|
T Consensus       140 ~~~~lv~E~~~~-~l~~~~~~----~l~~~~~~~~~~qil~aL~~lH---~~~iiHrDlkp~NIll~~~~~~kl~DFG~a  211 (464)
T 3ttj_A          140 QDVYLVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLA  211 (464)
T ss_dssp             CEEEEEEECCSE-EHHHHHTS----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCCC
T ss_pred             CeEEEEEeCCCC-CHHHHHhh----cCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChHhEEEeCCCCEEEEEEEee
Confidence             56999999976 57777653    3899999999999999999999   778999999999999999999999999999


Q ss_pred             eeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccc---
Q 003296          708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDH---  784 (833)
Q Consensus       708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~---  784 (833)
                      +......   .....+||+.|+|||++.+..|+.++||||+||++|||++|+.||.+......+.......+....+   
T Consensus       212 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~  288 (464)
T 3ttj_A          212 RTAGTSF---MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMK  288 (464)
T ss_dssp             -----CC---CC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHT
T ss_pred             eecCCCc---ccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHH
Confidence            8765332   2355789999999999999999999999999999999999999998766555443322111110000   


Q ss_pred             -----------------------ccccc-ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          785 -----------------------ILDFN-VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       785 -----------------------~~~~~-~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                                             ..... .............++.+++.+||+.||++|||++|+++|
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  356 (464)
T 3ttj_A          289 KLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  356 (464)
T ss_dssp             TSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             HcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence                                   00000 001111122336678999999999999999999999875

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=1.2e-42  Score=366.38  Aligned_cols=252  Identities=19%  Similarity=0.300  Sum_probs=185.2

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||.||+|+. .+|+.||||++. ..........+.+.+|++++++++||||+++++++.+.+..++|
T Consensus        11 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~-~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   89 (278)
T 3cok_A           11 EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMID-KKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV   89 (278)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEE-HHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceeeeeecCCCceEEEEEEEccCCceEEEEEee-hhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence            4678889999999999999997 589999999994 22222334457899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++... ...+++.++..++.|+++||+|||   +.+|+||||||+||+++.++.+|++|||++......
T Consensus        90 ~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~  165 (278)
T 3cok_A           90 LEMCHNGEMNRYLKNR-VKPFSENEARHFMHQIITGMLYLH---SHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMP  165 (278)
T ss_dssp             EECCTTEEHHHHHHTC-SSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSSCCGGGEEECTTCCEEECCCTTCEECC--
T ss_pred             EecCCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEEeecceeeccCC
Confidence            9999999999999853 346899999999999999999999   789999999999999999999999999999876432


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      ..  ......||+.|+|||++.+..++.++|||||||++|||++|+.||.........           ..+.......+
T Consensus       166 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~-----------~~~~~~~~~~~  232 (278)
T 3cok_A          166 HE--KHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTL-----------NKVVLADYEMP  232 (278)
T ss_dssp             ----------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC----------------CCSSCCCCC
T ss_pred             CC--cceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHHH-----------HHHhhcccCCc
Confidence            21  123467999999999999888999999999999999999999999754321111           11111111100


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                          ...+.++.+++.+||+.||++|||++|++++
T Consensus       233 ----~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h  263 (278)
T 3cok_A          233 ----SFLSIEAKDLIHQLLRRNPADRLSLSSVLDH  263 (278)
T ss_dssp             ----TTSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             ----cccCHHHHHHHHHHcccCHhhCCCHHHHhcC
Confidence                1123467899999999999999999999874

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=1.4e-42  Score=376.00  Aligned_cols=258  Identities=18%  Similarity=0.240  Sum_probs=206.9

Q ss_pred             HhcCCccccccCcccEEEEEEc--------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEe
Q 003296          555 AVANPLNVELKTRFSTYYKAVM--------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVL  625 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~--------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~  625 (833)
                      +.|...+.||+|+||.||+|..        .++..||||++....   .....+.+.+|+++++++ +|||||+++++|.
T Consensus        35 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~  111 (334)
T 2pvf_A           35 DKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA---TEKDLSDLVSEMEMMKMIGKHKNIINLLGACT  111 (334)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTC---CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             hHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCC---cHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEc
Confidence            5677889999999999999986        357789999995321   122346799999999999 8999999999999


Q ss_pred             cCCceEEEEeeCCCCChhhhhhcCCC--------------CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccce
Q 003296          626 ASDSAYLFYEYAPKGTLFDVLHGCLE--------------NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNI  691 (833)
Q Consensus       626 ~~~~~~lv~ey~~~g~L~~~l~~~~~--------------~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Ni  691 (833)
                      .++..++||||+++|+|.+++.....              ..++|.+++.++.|+++||+|||   +.+|+||||||+||
T Consensus       112 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NI  188 (334)
T 2pvf_A          112 QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNV  188 (334)
T ss_dssp             SSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGE
T ss_pred             cCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCccceE
Confidence            99999999999999999999986431              24899999999999999999999   78999999999999


Q ss_pred             eeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHH
Q 003296          692 FLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAK  770 (833)
Q Consensus       692 ll~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~  770 (833)
                      +++.++.+||+|||+++...............||+.|+|||++.+..++.++|||||||++|||+| |+.||.+... .+
T Consensus       189 ll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~-~~  267 (334)
T 2pvf_A          189 LVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV-EE  267 (334)
T ss_dssp             EECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCH-HH
T ss_pred             EEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCH-HH
Confidence            999999999999999987654332222234567899999999988889999999999999999999 9999975432 22


Q ss_pred             HHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          771 WVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ........ ...      ...      ...+.++.+++.+||+.||++|||+.|++++|+++
T Consensus       268 ~~~~~~~~-~~~------~~~------~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l  316 (334)
T 2pvf_A          268 LFKLLKEG-HRM------DKP------ANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI  316 (334)
T ss_dssp             HHHHHHHT-CCC------CCC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHhcC-CCC------CCC------ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence            22111111 100      000      11234678999999999999999999999999875

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=1.9e-42  Score=364.56  Aligned_cols=252  Identities=16%  Similarity=0.178  Sum_probs=206.2

Q ss_pred             HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~  631 (833)
                      ..+.|...+.||+|+||.||+|... ++..||+|++...    .....+.|.+|++++++++|||||+++++|...+..+
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~----~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   82 (277)
T 3f3z_A            7 INQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKY----FVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIY   82 (277)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGG----GCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhh----ccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEE
Confidence            4567899999999999999999974 6789999999422    1234678999999999999999999999999999999


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee---CCCCCceeccceeee
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL---KSLKEPQIGDIELCK  708 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill---~~~~~~ki~dfgl~~  708 (833)
                      +||||+++|+|.+++..  ...+++.++..++.|++.||+|||   +.+|+||||||+||++   +.++.+|++|||+++
T Consensus        83 lv~e~~~~~~L~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~  157 (277)
T 3f3z_A           83 LVMELCTGGELFERVVH--KRVFRESDAARIMKDVLSAVAYCH---KLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAA  157 (277)
T ss_dssp             EEEECCCSCBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTCE
T ss_pred             EEEeccCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEecCCCCCcEEEEecccce
Confidence            99999999999999876  346899999999999999999999   7889999999999999   788999999999998


Q ss_pred             eeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          709 VIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       709 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ......   ......||+.|+|||++.+ .++.++|||||||++|||++|+.||............ ...          
T Consensus       158 ~~~~~~---~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~-~~~----------  222 (277)
T 3f3z_A          158 RFKPGK---MMRTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKI-REG----------  222 (277)
T ss_dssp             ECCTTS---CBCCCCSCTTTCCHHHHTT-CBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH-HHC----------
T ss_pred             eccCcc---chhccCCCCCccChHHhcc-cCCchhhehhHHHHHHHHHHCCCCCCCCCHHHHHHHH-HhC----------
Confidence            765433   2245679999999998765 4899999999999999999999999764432221111 111          


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ....+.......+.++.+++.+||+.||++|||+.|++++
T Consensus       223 ~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~h  262 (277)
T 3f3z_A          223 TFTFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQALEH  262 (277)
T ss_dssp             CCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred             CCCCCchhhhcCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            0001111111234578899999999999999999999864

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=3.7e-43  Score=380.37  Aligned_cols=252  Identities=18%  Similarity=0.224  Sum_probs=202.5

Q ss_pred             HHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCc
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDS  629 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~  629 (833)
                      ...+.|+..+.||+|+||.||+|... +|+.||||++...        ...+.+|++++.++ +|||||++++++.+++.
T Consensus        19 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~--------~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~   90 (342)
T 2qr7_A           19 QFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKS--------KRDPTEEIEILLRYGQHPNIITLKDVYDDGKY   90 (342)
T ss_dssp             CHHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETT--------TCCCHHHHHHHHHHTTSTTBCCEEEEEECSSE
T ss_pred             CccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcc--------cCChHHHHHHHHHhcCCCCcCeEEEEEEcCCE
Confidence            34578999999999999999999974 7999999999422        12356799999988 79999999999999999


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC----CCceeccce
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL----KEPQIGDIE  705 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~----~~~ki~dfg  705 (833)
                      .|+|||||++|+|.+++..  ...+++.++..++.|++.||+|||   +.+|+||||||+|||+.++    +.+||+|||
T Consensus        91 ~~lv~E~~~gg~L~~~i~~--~~~~~~~~~~~~~~qi~~al~~lH---~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg  165 (342)
T 2qr7_A           91 VYVVTELMKGGELLDKILR--QKFFSEREASAVLFTITKTVEYLH---AQGVVHRDLKPSNILYVDESGNPESIRICDFG  165 (342)
T ss_dssp             EEEEECCCCSCBHHHHHHT--CTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSCSGGGEEECCCT
T ss_pred             EEEEEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCcEeccCCHHHEEEecCCCCcCeEEEEECC
Confidence            9999999999999999976  356899999999999999999999   7899999999999998433    348999999


Q ss_pred             eeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCc--cHHHHHHHhhccccccc
Q 003296          706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGN--ELAKWVLRNSAQQDKLD  783 (833)
Q Consensus       706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~--~~~~~~~~~~~~~~~~~  783 (833)
                      +++.......  .....+||+.|+|||++.+..|+.++|||||||++|||++|+.||.+..  ...+...........  
T Consensus       166 ~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~--  241 (342)
T 2qr7_A          166 FAKQLRAENG--LLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFS--  241 (342)
T ss_dssp             TCEECBCTTC--CBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHHCCCC--
T ss_pred             CcccCcCCCC--ceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHccCCcc--
Confidence            9987654332  2345789999999999988889999999999999999999999997532  222222221111000  


Q ss_pred             ccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          784 HILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       784 ~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                              .....+...+.++.+++.+||+.||++|||+.|+++|
T Consensus       242 --------~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~h  278 (342)
T 2qr7_A          242 --------LSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRH  278 (342)
T ss_dssp             --------CCSTTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred             --------cCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence                    0000111234578899999999999999999999875

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=1e-42  Score=367.45  Aligned_cols=255  Identities=19%  Similarity=0.258  Sum_probs=193.7

Q ss_pred             HhcCCccccccCcccEEEEEEcC----CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP----SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      +.|+..+.||+|+||.||+|...    .+..||||++....   .....+.|.+|+.++++++|||||++++++. ++..
T Consensus        15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~   90 (281)
T 1mp8_A           15 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT---SDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPV   90 (281)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTT---SHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSC
T ss_pred             HHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccC---CHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCcc
Confidence            46778899999999999999864    35679999984221   1223567999999999999999999999984 5678


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      ++||||+++|+|.+++... ...+++.++..++.|+++||+|||   +.+|+||||||+||+++.++.+||+|||+++..
T Consensus        91 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~  166 (281)
T 1mp8_A           91 WIIMELCTLGELRSFLQVR-KYSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYM  166 (281)
T ss_dssp             EEEEECCTTEEHHHHHHHT-TTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECC-------
T ss_pred             EEEEecCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeecccccHHHEEECCCCCEEECcccccccc
Confidence            9999999999999999863 346899999999999999999999   789999999999999999999999999999876


Q ss_pred             CCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          711 DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      ...... ......||+.|+|||++.+..++.++|||||||++|||++ |+.||.+........ ... .....      .
T Consensus       167 ~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~~~~-~i~-~~~~~------~  237 (281)
T 1mp8_A          167 EDSTYY-KASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIG-RIE-NGERL------P  237 (281)
T ss_dssp             -------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHH-HHH-TTCCC------C
T ss_pred             Cccccc-ccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHHHHH-HHH-cCCCC------C
Confidence            433221 2234567889999999988889999999999999999997 999997544322111 111 10000      0


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ..      ...+.++.+++.+||+.||++|||+.|++++|+++
T Consensus       238 ~~------~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~  274 (281)
T 1mp8_A          238 MP------PNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI  274 (281)
T ss_dssp             CC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CC------CCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence            00      12235678999999999999999999999999875

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=6.4e-43  Score=377.95  Aligned_cols=257  Identities=11%  Similarity=0.101  Sum_probs=206.0

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~l  632 (833)
                      .+|+..+.||+|+||.||+|+. .+|+.||||++...      ...+.+.+|+++++++ +||||+++++++...+..++
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~------~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~l   82 (330)
T 2izr_A            9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMK------SRAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAM   82 (330)
T ss_dssp             TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETT------CSSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEE
T ss_pred             CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccc------cchHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEE
Confidence            4677889999999999999996 58999999998422      1235689999999999 99999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC-----ceeccceee
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE-----PQIGDIELC  707 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~-----~ki~dfgl~  707 (833)
                      ||||+ +|+|.+++... ...+++.++..++.|++.||+|||   +.+|+||||||+|||++.++.     +||+|||++
T Consensus        83 v~e~~-~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH---~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a  157 (330)
T 2izr_A           83 VLELL-GPSLEDLFDLC-DRTFSLKTVLMIAIQLISRMEYVH---SKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALA  157 (330)
T ss_dssp             EEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTC
T ss_pred             EEEeC-CCCHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeeeccCCCCCCceEEEEEcccc
Confidence            99999 99999999864 346999999999999999999999   779999999999999998887     999999999


Q ss_pred             eeeCCCCCCC-----ccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCc--cHHHHHHHhhcccc
Q 003296          708 KVIDPSKSTG-----SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGN--ELAKWVLRNSAQQD  780 (833)
Q Consensus       708 ~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~--~~~~~~~~~~~~~~  780 (833)
                      +.........     .....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+..  ...+........  
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~--  235 (330)
T 2izr_A          158 KEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDT--  235 (330)
T ss_dssp             EESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHH--
T ss_pred             eeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhh--
Confidence            9764432211     1245789999999999999999999999999999999999999998532  222211111100  


Q ss_pred             cccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          781 KLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       781 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                              .............+++.+++.+||+.||.+||++.+|.+.|+++
T Consensus       236 --------~~~~~~~~~~~~~p~~~~li~~~l~~~p~~RP~~~~l~~~l~~~  279 (330)
T 2izr_A          236 --------KRATPIEVLCENFPEMATYLRYVRRLDFFEKPDYDYLRKLFTDL  279 (330)
T ss_dssp             --------HHHSCHHHHTTTCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHH
T ss_pred             --------hccCCHHHHhccChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence                    00000000001112788999999999999999999999998764

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=9.3e-43  Score=388.39  Aligned_cols=258  Identities=19%  Similarity=0.209  Sum_probs=194.7

Q ss_pred             HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchh----hhccChhHHHHHHHHHhcCCCCCcccceEEEec
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKI----FQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA  626 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~----~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~  626 (833)
                      ...+.|...+.||+|+||.||+|.. .+|+.||||++......    ........|.+|+++|++++|||||++++++..
T Consensus       132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~  211 (419)
T 3i6u_A          132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA  211 (419)
T ss_dssp             HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES
T ss_pred             hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence            5567899999999999999999997 47899999999532211    111223468999999999999999999999854


Q ss_pred             CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC---CCceecc
Q 003296          627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL---KEPQIGD  703 (833)
Q Consensus       627 ~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~---~~~ki~d  703 (833)
                       +..|+|||||++|+|.+++..  ...+++.++..++.|++.||+|||   +.+|+||||||+|||++.+   +.+||+|
T Consensus       212 -~~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kl~D  285 (419)
T 3i6u_A          212 -EDYYIVLELMEGGELFDKVVG--NKRLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITD  285 (419)
T ss_dssp             -SEEEEEEECCTTCBGGGGTSS--SCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSSSCCEEECC
T ss_pred             -CceEEEEEcCCCCcHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCCCcceEEEee
Confidence             558999999999999999875  456999999999999999999999   7789999999999999754   4599999


Q ss_pred             ceeeeeeCCCCCCCccccccccccccccccccC---CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc
Q 003296          704 IELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT---MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD  780 (833)
Q Consensus       704 fgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~  780 (833)
                      ||+++......   .....+||+.|+|||++.+   ..|+.++|||||||++|||+||+.||.+..............  
T Consensus       286 FG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~~~i~~~--  360 (419)
T 3i6u_A          286 FGHSKILGETS---LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSG--  360 (419)
T ss_dssp             SSTTTSCC--------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHHHHHHTT--
T ss_pred             cccceecCCCc---cccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHHHHHhcC--
Confidence            99998764322   2345789999999999853   568899999999999999999999997533211111110000  


Q ss_pred             cccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          781 KLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       781 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                              ............+.++.+++.+||+.||++|||++|+++|
T Consensus       361 --------~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h  400 (419)
T 3i6u_A          361 --------KYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRH  400 (419)
T ss_dssp             --------CCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             --------CCCCCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhCC
Confidence                    0001111112335678899999999999999999999975

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=8.6e-43  Score=379.62  Aligned_cols=263  Identities=16%  Similarity=0.122  Sum_probs=203.3

Q ss_pred             HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchh-hhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKI-FQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS  629 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~-~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~  629 (833)
                      ...+.|+..+.||+|+||.||+|.. .++..||||++...... ......+.+.+|++++++++|||||+++++|.+++.
T Consensus        23 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~  102 (345)
T 3hko_A           23 ELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQY  102 (345)
T ss_dssp             HHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             hhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCCe
Confidence            6678899999999999999999997 57899999998422111 122345789999999999999999999999999999


Q ss_pred             eEEEEeeCCCCChhhhhhcCC--------------------------------------CCCCCHHHHHHHHHHHHHHHH
Q 003296          630 AYLFYEYAPKGTLFDVLHGCL--------------------------------------ENALDWASRYSIAVGVAQGLA  671 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~--------------------------------------~~~l~~~~~~~i~~~i~~~l~  671 (833)
                      .++|||||++|+|.+++....                                      ...+++..+..++.|+++||+
T Consensus       103 ~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~  182 (345)
T 3hko_A          103 ICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALH  182 (345)
T ss_dssp             EEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHH
Confidence            999999999999999985210                                      112356778899999999999


Q ss_pred             hhhcCCCCCeeecCCCccceeeCCCC--CceeccceeeeeeCCCCCC--CccccccccccccccccccC--CcccccCcc
Q 003296          672 FLHGFTSNPILLLDLSTRNIFLKSLK--EPQIGDIELCKVIDPSKST--GSLSTVAGSVGYIPPEYAYT--MRVTMAGNV  745 (833)
Q Consensus       672 ylH~~~~~~iiHrdlk~~Nill~~~~--~~ki~dfgl~~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv  745 (833)
                      |||   +.+|+||||||+||+++.++  .+||+|||+++........  .......||+.|+|||++.+  ..++.++||
T Consensus       183 ~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~Di  259 (345)
T 3hko_A          183 YLH---NQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDA  259 (345)
T ss_dssp             HHH---HTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHH
T ss_pred             HHH---HCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHH
Confidence            999   77899999999999998776  8999999999876432211  12245679999999999865  678999999


Q ss_pred             hhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHH
Q 003296          746 YSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSV  825 (833)
Q Consensus       746 ~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~ev  825 (833)
                      |||||++|||++|+.||.+........ ........          .........+.++.+++.+||+.||++|||+.|+
T Consensus       260 wslG~il~el~~g~~pf~~~~~~~~~~-~~~~~~~~----------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~  328 (345)
T 3hko_A          260 WSAGVLLHLLLMGAVPFPGVNDADTIS-QVLNKKLC----------FENPNYNVLSPLARDLLSNLLNRNVDERFDAMRA  328 (345)
T ss_dssp             HHHHHHHHHHHHSSCSSCCSSHHHHHH-HHHHCCCC----------TTSGGGGGSCHHHHHHHHHHSCSCTTTSCCHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCCChHHHHH-HHHhcccc----------cCCcccccCCHHHHHHHHHHcCCChhHCCCHHHH
Confidence            999999999999999997654432221 11111110          0111111234578899999999999999999999


Q ss_pred             HHH
Q 003296          826 LRM  828 (833)
Q Consensus       826 l~~  828 (833)
                      +++
T Consensus       329 l~h  331 (345)
T 3hko_A          329 LQH  331 (345)
T ss_dssp             HHS
T ss_pred             hcC
Confidence            985

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.4e-42  Score=375.18  Aligned_cols=248  Identities=15%  Similarity=0.176  Sum_probs=205.9

Q ss_pred             HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhh----hccChhHHHHHHHHHhcCCCCCcccceEEEec
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIF----QLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA  626 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~----~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~  626 (833)
                      ...+.|+..+.||+|+||.||+|+. .+|+.||||++.......    .....+.+.+|++++++++|||||+++++|..
T Consensus        21 ~~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~  100 (335)
T 3dls_A           21 EYSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFEN  100 (335)
T ss_dssp             HHHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEEC
T ss_pred             ccccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEee
Confidence            5567899999999999999999996 579999999995322111    11234578899999999999999999999999


Q ss_pred             CCceEEEEeeCCCC-ChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccce
Q 003296          627 SDSAYLFYEYAPKG-TLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIE  705 (833)
Q Consensus       627 ~~~~~lv~ey~~~g-~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfg  705 (833)
                      .+..++||||+.+| +|.+++..  ...+++..+..++.|++.||+|||   ..+|+||||||+||+++.++.+||+|||
T Consensus       101 ~~~~~lv~e~~~~g~~l~~~~~~--~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~Dfg  175 (335)
T 3dls_A          101 QGFFQLVMEKHGSGLDLFAFIDR--HPRLDEPLASYIFRQLVSAVGYLR---LKDIIHRDIKDENIVIAEDFTIKLIDFG  175 (335)
T ss_dssp             SSEEEEEEECCTTSCBHHHHHHT--CCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCT
T ss_pred             CCEEEEEEEeCCCCccHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCeEEeccCHHHEEEcCCCcEEEeecc
Confidence            99999999999877 99999986  446999999999999999999999   7899999999999999999999999999


Q ss_pred             eeeeeCCCCCCCccccccccccccccccccCCcc-cccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccc
Q 003296          706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRV-TMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDH  784 (833)
Q Consensus       706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~  784 (833)
                      +++......   .....+||+.|+|||++.+..+ +.++|||||||++|||++|+.||......             ...
T Consensus       176 ~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-------------~~~  239 (335)
T 3dls_A          176 SAAYLERGK---LFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEET-------------VEA  239 (335)
T ss_dssp             TCEECCTTC---CBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGG-------------TTT
T ss_pred             cceECCCCC---ceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHH-------------Hhh
Confidence            998775433   2245789999999999988776 78999999999999999999999642110             011


Q ss_pred             cccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          785 ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       785 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ..    ..+.    ..+.++.+++.+||+.||++|||++|++++
T Consensus       240 ~~----~~~~----~~~~~l~~li~~~L~~dP~~Rps~~ell~h  275 (335)
T 3dls_A          240 AI----HPPY----LVSKELMSLVSGLLQPVPERRTTLEKLVTD  275 (335)
T ss_dssp             CC----CCSS----CCCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred             cc----CCCc----ccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            11    1000    123467899999999999999999999986

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=8e-43  Score=378.90  Aligned_cols=250  Identities=22%  Similarity=0.301  Sum_probs=202.2

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      ...|+..+.||+|+||.||+|+. .+|+.||||++..... ......++|.+|++++++++|||||+++++|..++..++
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l  131 (348)
T 1u5q_A           53 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGK-QSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWL  131 (348)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSS-CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             hhheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccc-cchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEE
Confidence            45688889999999999999996 5899999999953221 112234679999999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||||++ |+|.+++... ...+++.++..++.|+++||+|||   +.+|+||||||+|||++.++.+||+|||+++....
T Consensus       132 v~e~~~-g~l~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~  206 (348)
T 1u5q_A          132 VMEYCL-GSASDLLEVH-KKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP  206 (348)
T ss_dssp             EEECCS-EEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS
T ss_pred             EEecCC-CCHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEeeccCceecCC
Confidence            999997 6888888643 346899999999999999999999   77899999999999999999999999999986542


Q ss_pred             CCCCCcccccccccccccccccc---CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAY---TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      .      ...+||+.|+|||++.   ...++.++|||||||++|||++|+.||.+.......... ... .. ..     
T Consensus       207 ~------~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~-~~~-~~-~~-----  272 (348)
T 1u5q_A          207 A------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHI-AQN-ES-PA-----  272 (348)
T ss_dssp             B------CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHH-HHS-CC-CC-----
T ss_pred             C------CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHH-Hhc-CC-CC-----
Confidence            2      3467999999999874   567899999999999999999999999765443322211 111 10 00     


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ...     ...+..+.+++.+||+.||++|||++|++++
T Consensus       273 ~~~-----~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h  306 (348)
T 1u5q_A          273 LQS-----GHWSEYFRNFVDSCLQKIPQDRPTSEVLLKH  306 (348)
T ss_dssp             CCC-----TTSCHHHHHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred             CCC-----CCCCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence            000     0123467789999999999999999999875

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=9.8e-43  Score=372.95  Aligned_cols=249  Identities=18%  Similarity=0.183  Sum_probs=197.2

Q ss_pred             HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCce
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~  630 (833)
                      ..+.|+..+.||+|+||+||+|... +|+.||||++.....  .......+.+|+..+.++ +|||||+++++|.+.+..
T Consensus        55 ~~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~  132 (311)
T 3p1a_A           55 FQQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFR--GPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGIL  132 (311)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCC--SHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEE
T ss_pred             hhhheeeeheeccCCCeEEEEEEECCCCeEEEEEEeccccc--ChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEE
Confidence            4568999999999999999999975 899999999843211  112234566677766666 899999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      |+||||+ +|+|.+++... ...++|.+++.++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||+++..
T Consensus       133 ~lv~e~~-~~~L~~~~~~~-~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~  207 (311)
T 3p1a_A          133 YLQTELC-GPSLQQHCEAW-GASLPEAQVWGYLRDTLLALAHLH---SQGLVHLDVKPANIFLGPRGRCKLGDFGLLVEL  207 (311)
T ss_dssp             EEEEECC-CCBHHHHHHHH-CSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECGGGCEEECCCTTCEEC
T ss_pred             EEEEecc-CCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEECCCCCEEEccceeeeec
Confidence            9999999 67999988764 346999999999999999999999   778999999999999999999999999999876


Q ss_pred             CCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296          711 DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                      ....   ......||++|+|||++.+ .++.++|||||||++|||++|..|+.........     .. ..    ..   
T Consensus       208 ~~~~---~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~-----~~-~~----~~---  270 (311)
T 3p1a_A          208 GTAG---AGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEGWQQL-----RQ-GY----LP---  270 (311)
T ss_dssp             C---------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHHHHHHH-----TT-TC----CC---
T ss_pred             ccCC---CCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHH-----hc-cC----CC---
Confidence            4332   2245679999999998876 7999999999999999999998777543221111     01 00    00   


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                         .......+.++.+++.+||+.||++|||++|++++
T Consensus       271 ---~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h  305 (311)
T 3p1a_A          271 ---PEFTAGLSSELRSVLVMMLEPDPKLRATAEALLAL  305 (311)
T ss_dssp             ---HHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             ---cccccCCCHHHHHHHHHHcCCChhhCcCHHHHHhC
Confidence               01112234578899999999999999999999875

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=1.8e-42  Score=382.30  Aligned_cols=252  Identities=18%  Similarity=0.248  Sum_probs=197.6

Q ss_pred             hcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC--CCCcccceEEEecCCceEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS--NSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~--H~niv~~~~~~~~~~~~~lv  633 (833)
                      .|+..+.||+|+||.||+|...+|+.||||++.....  .....+.|.+|+++|++++  |||||++++++..++..|+|
T Consensus        57 ~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv  134 (390)
T 2zmd_A           57 IYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA--DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV  134 (390)
T ss_dssp             EEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             ceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccc--cHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEE
Confidence            4788899999999999999988899999999853221  1223567999999999997  59999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      || +.+|+|.+++..  ...+++.++..++.|++.||+|||   +.+|+||||||+|||++ ++.+||+|||+++.....
T Consensus       135 ~E-~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~  207 (390)
T 2zmd_A          135 ME-CGNIDLNSWLKK--KKSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPD  207 (390)
T ss_dssp             EE-CCSEEHHHHHHH--CSSCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC---
T ss_pred             Ee-cCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHEEEE-CCeEEEEecCccccccCC
Confidence            99 568899999986  346899999999999999999999   78999999999999996 588999999999876543


Q ss_pred             CCCCccccccccccccccccccC-----------CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccc
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYT-----------MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL  782 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~  782 (833)
                      .........+||+.|||||++.+           ..++.++|||||||++|||++|+.||..................  
T Consensus       208 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~--  285 (390)
T 2zmd_A          208 TTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNH--  285 (390)
T ss_dssp             ------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHCTTS--
T ss_pred             CccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHHHHHHHhCccc--
Confidence            32222345689999999999864           36899999999999999999999999765443322222111100  


Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          783 DHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                          ....+..      ...++.+++.+||+.||++|||+.|++++
T Consensus       286 ----~~~~~~~------~~~~~~~li~~~L~~dP~~Rps~~ell~h  321 (390)
T 2zmd_A          286 ----EIEFPDI------PEKDLQDVLKCCLKRDPKQRISIPELLAH  321 (390)
T ss_dssp             ----CCCCCCC------SCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             ----cCCCCcc------chHHHHHHHHHHcccChhhCCCHHHHhhC
Confidence                0011111      12467899999999999999999999875

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=3.4e-43  Score=376.69  Aligned_cols=257  Identities=19%  Similarity=0.223  Sum_probs=195.9

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc----
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS----  629 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~----  629 (833)
                      +.|+..+.||+|+||.||+|+. .+|+.||||++... ........+.|.+|++++++++|||||++++++...+.    
T Consensus        12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~   90 (311)
T 3ork_A           12 DRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRAD-LARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   90 (311)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTT-TTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred             CcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCcc-ccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence            4677889999999999999996 58999999999532 21222234678999999999999999999999987654    


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                      .|+||||+++|+|.++++.  ...+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++.
T Consensus        91 ~~lv~e~~~g~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~  165 (311)
T 3ork_A           91 PYIVMEYVDGVTLRDIVHT--EGPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARA  165 (311)
T ss_dssp             EEEEEECCCEEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEETTSCEEECCCSCC--
T ss_pred             cEEEEecCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEcCCCCEEEeeccCccc
Confidence            4999999999999999986  346899999999999999999999   77899999999999999999999999999987


Q ss_pred             eCCCCCC-CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          710 IDPSKST-GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       710 ~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ....... .......||+.|+|||++.+..++.++|||||||++|||+||+.||.+........ .........      
T Consensus       166 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~-~~~~~~~~~------  238 (311)
T 3ork_A          166 IADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAY-QHVREDPIP------  238 (311)
T ss_dssp             ----------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHH-HHHHCCCCC------
T ss_pred             ccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHH-HHhcCCCCC------
Confidence            6433221 12234679999999999999899999999999999999999999997654332211 111111000      


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                          ........+.++.+++.+||+.||++||++.+++++
T Consensus       239 ----~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~  274 (311)
T 3ork_A          239 ----PSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRA  274 (311)
T ss_dssp             ----HHHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHH
T ss_pred             ----cccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHH
Confidence                000011234568899999999999999987776654

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.6e-42  Score=383.49  Aligned_cols=268  Identities=18%  Similarity=0.213  Sum_probs=196.3

Q ss_pred             HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCC-
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASD-  628 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~-  628 (833)
                      ...+.|+..+.||+|+||.||+|.+ .+|+.||||++...  .......+.+.+|+.++++++ |||||++++++..++ 
T Consensus         6 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~--~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~   83 (388)
T 3oz6_A            6 HVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDA--FQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADND   83 (388)
T ss_dssp             HHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC----CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTS
T ss_pred             cccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEeccc--ccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCC
Confidence            4557889999999999999999996 57999999998422  111223567889999999997 999999999998654 


Q ss_pred             -ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          629 -SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       629 -~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                       ..|+|||||+ |+|.++++.   ..+++..+..++.|+++||+|||   +.+|+||||||+|||++.++.+||+|||+|
T Consensus        84 ~~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a  156 (388)
T 3oz6_A           84 RDVYLVFDYME-TDLHAVIRA---NILEPVHKQYVVYQLIKVIKYLH---SGGLLHRDMKPSNILLNAECHVKVADFGLS  156 (388)
T ss_dssp             SCEEEEEECCS-EEHHHHHHH---TCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             CEEEEEecccC-cCHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHeEEcCCCCEEecCCccc
Confidence             6899999997 699999985   36899999999999999999999   789999999999999999999999999999


Q ss_pred             eeeCCCCC-------------------CCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCcc
Q 003296          708 KVIDPSKS-------------------TGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNE  767 (833)
Q Consensus       708 ~~~~~~~~-------------------~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~  767 (833)
                      +.......                   .......+||+.|+|||++.+ ..|+.++||||+||++|||++|++||.+...
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~  236 (388)
T 3oz6_A          157 RSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSST  236 (388)
T ss_dssp             EESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             ccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence            87642110                   112345689999999999876 6789999999999999999999999987655


Q ss_pred             HHHHHHHhhcccccccccc----------------------cccccCCchhHH----------HHHHHHHHHHHhccCCC
Q 003296          768 LAKWVLRNSAQQDKLDHIL----------------------DFNVSRTSLAVR----------SQMLTVLKVAVACVSVS  815 (833)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~----------~~~~~~~~l~~~cl~~d  815 (833)
                      ...+.......+....+.+                      ..........+.          ....++.+++.+||+.|
T Consensus       237 ~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~d  316 (388)
T 3oz6_A          237 MNQLERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFN  316 (388)
T ss_dssp             HHHHHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSS
T ss_pred             HHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccC
Confidence            4433222111000000000                      000000000000          12457889999999999


Q ss_pred             CCCCCCHHHHHHH
Q 003296          816 PEARPKMKSVLRM  828 (833)
Q Consensus       816 P~~Rps~~evl~~  828 (833)
                      |++|||++|+++|
T Consensus       317 P~~R~t~~e~l~H  329 (388)
T 3oz6_A          317 PNKRISANDALKH  329 (388)
T ss_dssp             GGGSCCHHHHTTS
T ss_pred             cccCCCHHHHhCC
Confidence            9999999999876

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=9e-43  Score=381.99  Aligned_cols=269  Identities=13%  Similarity=0.126  Sum_probs=205.5

Q ss_pred             HHhcCCccccccCcccEEEEEEcCC------CceEEEEEccccchh-------hhccChhHHHHHHHHHhcCCCCCcccc
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMPS------GMSYFIKKLNWSDKI-------FQLGSHHKFDKELEVLGKLSNSNVMTP  620 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~~------~~~vavK~~~~~~~~-------~~~~~~~~~~~E~~~l~~l~H~niv~~  620 (833)
                      .+.|...+.||+|+||.||+|.+..      ++.||||++......       ........+.+|+..+++++|||||++
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~  113 (364)
T 3op5_A           34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY  113 (364)
T ss_dssp             CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred             CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence            4568888999999999999998754      578999998533211       011123456677888889999999999


Q ss_pred             eEEEecC----CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC--
Q 003296          621 LAYVLAS----DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK--  694 (833)
Q Consensus       621 ~~~~~~~----~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~--  694 (833)
                      ++++...    ...|+||||| +|+|.+++... ...++|.++..|+.|++.||+|||   +.+|+||||||+|||++  
T Consensus       114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH---~~~iiHrDlkp~Nill~~~  188 (364)
T 3op5_A          114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEAN-AKRFSRKTVLQLSLRILDILEYIH---EHEYVHGDIKASNLLLNYK  188 (364)
T ss_dssp             EEEEEEEETTEEEEEEEEECE-EEEHHHHHHHT-TSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEESS
T ss_pred             EeeeeeccCCcceEEEEEeCC-CCCHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEEecCCHHHEEEecC
Confidence            9999875    4589999999 99999999863 356999999999999999999999   77999999999999999  


Q ss_pred             CCCCceeccceeeeeeCCCCCC-----CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHH
Q 003296          695 SLKEPQIGDIELCKVIDPSKST-----GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELA  769 (833)
Q Consensus       695 ~~~~~ki~dfgl~~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~  769 (833)
                      .++.+||+|||+++........     ......+||+.|||||++.+..++.++|||||||++|||+||+.||.+.....
T Consensus       189 ~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~  268 (364)
T 3op5_A          189 NPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDP  268 (364)
T ss_dssp             CTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCH
T ss_pred             CCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccCH
Confidence            8899999999999876432211     11134569999999999999899999999999999999999999998533222


Q ss_pred             HHHHHhhc-ccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          770 KWVLRNSA-QQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       770 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .+...... ....+..+++..+..     ...+.++.+++.+||+.||++||++++|++.|+++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~  327 (364)
T 3op5_A          269 KYVRDSKIRYRENIASLMDKCFPA-----ANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQG  327 (364)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHSCT-----TCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHhccc-----ccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence            22211111 111122222222110     11245788999999999999999999999998764

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-42  Score=376.42  Aligned_cols=253  Identities=18%  Similarity=0.243  Sum_probs=196.3

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCC--CCcccceEEEecCCceEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSN--SNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H--~niv~~~~~~~~~~~~~l  632 (833)
                      +.|+..+.||+|+||.||+|...+++.||||++.....  .....+.|.+|++++++++|  ||||++++++..++..|+
T Consensus         9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l   86 (343)
T 3dbq_A            9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA--DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM   86 (343)
T ss_dssp             CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeecccc--chHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEE
Confidence            35778899999999999999998999999999853211  12234679999999999987  999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||| +.+|+|.+++..  ...+++.++..++.|++.||+|||   +.+|+||||||+|||++ ++.+||+|||+++....
T Consensus        87 v~e-~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~al~~lH---~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~  159 (343)
T 3dbq_A           87 VME-CGNIDLNSWLKK--KKSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQP  159 (343)
T ss_dssp             EEC-CCSEEHHHHHHH--SCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC--
T ss_pred             EEe-CCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEEE-CCcEEEeecccccccCc
Confidence            999 568899999987  456899999999999999999999   77899999999999997 57899999999987654


Q ss_pred             CCCCCccccccccccccccccccC-----------CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccc
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYT-----------MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDK  781 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~  781 (833)
                      ..........+||+.|+|||++.+           ..++.++|||||||++|||++|+.||.+.................
T Consensus       160 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~  239 (343)
T 3dbq_A          160 DTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHE  239 (343)
T ss_dssp             ----------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSC
T ss_pred             ccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHHHHHHhcCCcc
Confidence            332222345689999999999864           668999999999999999999999997644432222221111000


Q ss_pred             ccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          782 LDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       782 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                            ...+.      ....++.+++.+||+.||++|||+.|+++|
T Consensus       240 ------~~~~~------~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h  274 (343)
T 3dbq_A          240 ------IEFPD------IPEKDLQDVLKCCLKRDPKQRISIPELLAH  274 (343)
T ss_dssp             ------CCCCC------CSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             ------cCCcc------cCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence                  01111      112367799999999999999999999876

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=1e-42  Score=392.02  Aligned_cols=254  Identities=21%  Similarity=0.274  Sum_probs=202.0

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +.|...+.||+|+||.||+|...++..||||+++...     ...++|.+|+++|++++|||||++++++.. +..++||
T Consensus       184 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~  257 (452)
T 1fmk_A          184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-----MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVT  257 (452)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-----SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEE
T ss_pred             hHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC-----CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEe
Confidence            4577788999999999999999888889999995221     235789999999999999999999999876 7789999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      |||++|+|.++++......+++.++..++.|+++||+|||   +.+|+||||||+|||+++++.+||+|||+++......
T Consensus       258 e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~  334 (452)
T 1fmk_A          258 EYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE  334 (452)
T ss_dssp             CCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCTTC------
T ss_pred             hhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEECCCCCEEECCCccceecCCCc
Confidence            9999999999997533346899999999999999999999   7889999999999999999999999999998764332


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      .. ......||+.|+|||++.+..++.++|||||||++|||+| |+.||.+.... +..... ......      ..+  
T Consensus       335 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~-~~~~~i-~~~~~~------~~~--  403 (452)
T 1fmk_A          335 YT-ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR-EVLDQV-ERGYRM------PCP--  403 (452)
T ss_dssp             ---------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH-HHHHHH-HTTCCC------CCC--
T ss_pred             ee-cccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHH-HHHHHH-HcCCCC------CCC--
Confidence            11 1234567889999999988899999999999999999999 99999754332 111111 111110      000  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                          ...+.++.+++.+||+.||++|||++|+++.|+++
T Consensus       404 ----~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~  438 (452)
T 1fmk_A          404 ----PECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDY  438 (452)
T ss_dssp             ----TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTT
T ss_pred             ----CCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence                12345678999999999999999999999999875

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=1.9e-42  Score=379.12  Aligned_cols=261  Identities=15%  Similarity=0.184  Sum_probs=204.7

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-----CCCcccceEEEecC
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-----NSNVMTPLAYVLAS  627 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-----H~niv~~~~~~~~~  627 (833)
                      .+.|...+.||+|+||.||+|+. .+|+.||||++....     ...+.+.+|++++++++     |||||++++++...
T Consensus        34 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~  108 (360)
T 3llt_A           34 NNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIK-----KYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYY  108 (360)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCH-----HHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEET
T ss_pred             cCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccch-----hhhhhhHHHHHHHHHhcccCCCCCCeecccceeeEC
Confidence            46788899999999999999997 578999999994221     12456788999999997     99999999999999


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC------------
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS------------  695 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~------------  695 (833)
                      +..++||||+ +|+|.+++.......+++.++..++.|++.||+|||   +.+|+||||||+|||++.            
T Consensus       109 ~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~~~~~~  184 (360)
T 3llt_A          109 DHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLR---KMSLTHTDLKPENILLDDPYFEKSLITVRR  184 (360)
T ss_dssp             TEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCTTCCEEEEEEEC
T ss_pred             CeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCcccEEEccccccccccchhc
Confidence            9999999999 899999998765557999999999999999999999   789999999999999975            


Q ss_pred             -------------CCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcc
Q 003296          696 -------------LKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAV  762 (833)
Q Consensus       696 -------------~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~  762 (833)
                                   ++.+||+|||+++......     ....||+.|+|||++.+..++.++|||||||++|||+||+.||
T Consensus       185 ~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf  259 (360)
T 3llt_A          185 VTDGKKIQIYRTKSTGIKLIDFGCATFKSDYH-----GSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLF  259 (360)
T ss_dssp             TTTCCEEEEEEESCCCEEECCCTTCEETTSCC-----CSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSC
T ss_pred             ccccccccccccCCCCEEEEeccCceecCCCC-----cCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCC
Confidence                         7889999999998754322     3568999999999999999999999999999999999999999


Q ss_pred             cCCccHHHHHHHhhccccccc------------ccccc-----cccCCch--------------hHHHHHHHHHHHHHhc
Q 003296          763 NQGNELAKWVLRNSAQQDKLD------------HILDF-----NVSRTSL--------------AVRSQMLTVLKVAVAC  811 (833)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~-----~~~~~~~--------------~~~~~~~~~~~l~~~c  811 (833)
                      .....................            ..++.     ..+....              ........+.+++.+|
T Consensus       260 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  339 (360)
T 3llt_A          260 RTHEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSI  339 (360)
T ss_dssp             CCSSHHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccccchHHHHHHHHHHH
Confidence            765433222111110000000            00000     0000000              0001125677999999


Q ss_pred             cCCCCCCCCCHHHHHHH
Q 003296          812 VSVSPEARPKMKSVLRM  828 (833)
Q Consensus       812 l~~dP~~Rps~~evl~~  828 (833)
                      |+.||++|||++|+++|
T Consensus       340 L~~dP~~Rpta~elL~h  356 (360)
T 3llt_A          340 LQIDPTLRPSPAELLKH  356 (360)
T ss_dssp             CCSSGGGSCCHHHHTTS
T ss_pred             hcCChhhCCCHHHHhcC
Confidence            99999999999999875

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=1.5e-42  Score=367.57  Aligned_cols=260  Identities=21%  Similarity=0.328  Sum_probs=194.6

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      ..|...+.||+|+||.||+|+..  ..||||+++....  .....+.|.+|++++++++|||||++++++ ..+..++||
T Consensus        24 ~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~   98 (289)
T 3og7_A           24 GQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAP--TPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVT   98 (289)
T ss_dssp             TSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEE
T ss_pred             cceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCC--CHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEE
Confidence            45777899999999999999864  3599999853221  122346799999999999999999999965 556789999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.+++... ...+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++......
T Consensus        99 e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  174 (289)
T 3og7_A           99 QWCEGSSLYHHLHAS-ETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWS  174 (289)
T ss_dssp             ECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEEEECCCC---------
T ss_pred             EecCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHH---hCCcccccCccceEEECCCCCEEEccceecccccccc
Confidence            999999999999753 346999999999999999999999   7889999999999999999999999999998664332


Q ss_pred             CCCcccccccccccccccccc---CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296          715 STGSLSTVAGSVGYIPPEYAY---TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      .........||+.|+|||++.   +..++.++|||||||++|||++|+.||................ . .    .+...
T Consensus       175 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~-~-~----~~~~~  248 (289)
T 3og7_A          175 GSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRG-S-L----SPDLS  248 (289)
T ss_dssp             ---------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHHHHHHT-S-C----CCCTT
T ss_pred             ccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHHHHhccc-c-c----Ccchh
Confidence            222334567999999999886   5668899999999999999999999998655543332222111 1 0    00111


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ..   ....+.++.+++.+||+.||++|||+.|++++|+++
T Consensus       249 ~~---~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l  286 (289)
T 3og7_A          249 KV---RSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEEL  286 (289)
T ss_dssp             SS---CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHT
T ss_pred             hc---cccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHH
Confidence            00   012345788999999999999999999999999986

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=2.1e-42  Score=377.79  Aligned_cols=249  Identities=16%  Similarity=0.154  Sum_probs=192.3

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +.|+..+.||+|+||.||+|+.. +|+.||||++....     ...+.+.+|+.++++++|||||++++++..++..++|
T Consensus        20 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv   94 (361)
T 3uc3_A           20 DRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGA-----AIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAII   94 (361)
T ss_dssp             TTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESST-----TSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCc-----cccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEE
Confidence            45788899999999999999975 89999999994221     2346789999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC--ceeccceeeeeeC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE--PQIGDIELCKVID  711 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~--~ki~dfgl~~~~~  711 (833)
                      ||||++|+|.+++..  ...+++..+..++.|+++||+|||   +.+|+||||||+||+++.++.  +||+|||+++...
T Consensus        95 ~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~ql~~~L~~LH---~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~  169 (361)
T 3uc3_A           95 MEYASGGELYERICN--AGRFSEDEARFFFQQLLSGVSYCH---SMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSV  169 (361)
T ss_dssp             EECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTCCSCCCCGGGEEECSSSSCCEEECCCCCC----
T ss_pred             EEeCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCceEEEeecCcccccc
Confidence            999999999999975  346999999999999999999999   788999999999999987765  9999999998543


Q ss_pred             CCCCCCccccccccccccccccccCCccccc-CcchhhHHHHHHHHhCCCcccCCcc---HHHHHHHhhccccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMA-GNVYSFGVILLELLTGKTAVNQGNE---LAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~-~Dv~S~Gvvl~elltg~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~  787 (833)
                      ...   .....+||+.|+|||++.+..++.+ +||||+||++|||++|+.||.+...   ..............      
T Consensus       170 ~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~~~------  240 (361)
T 3uc3_A          170 LHS---QPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYS------  240 (361)
T ss_dssp             --------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTCCC------
T ss_pred             ccC---CCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCC------
Confidence            222   2245679999999999988777655 8999999999999999999975332   12222111111000      


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        .+.    ....+.++.+++.+||+.||++|||+.|+++|
T Consensus       241 --~~~----~~~~s~~~~~li~~~L~~dP~~Rps~~ell~h  275 (361)
T 3uc3_A          241 --IPD----DIRISPECCHLISRIFVADPATRISIPEIKTH  275 (361)
T ss_dssp             --CCT----TSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             --CCC----cCCCCHHHHHHHHHHccCChhHCcCHHHHHhC
Confidence              000    00123467899999999999999999999876

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.7e-42  Score=370.91  Aligned_cols=260  Identities=15%  Similarity=0.109  Sum_probs=198.9

Q ss_pred             HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      -+.|+..+.||+|+||.||+|... +|+.||||++... ........+.|.+|++++++++||||+++++++..++..|+
T Consensus        33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~l  111 (309)
T 2h34_A           33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSET-LSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYV  111 (309)
T ss_dssp             -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGG-GGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEE
T ss_pred             eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcc-cccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEE
Confidence            356888899999999999999974 7899999999422 22222234679999999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||||+++|+|.+++..  ...+++.++..++.|+++||+|||   +.+|+||||||+||+++.++.+||+|||+++....
T Consensus       112 v~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~  186 (309)
T 2h34_A          112 DMRLINGVDLAAMLRR--QGPLAPPRAVAIVRQIGSALDAAH---AAGATHRDVKPENILVSADDFAYLVDFGIASATTD  186 (309)
T ss_dssp             EEECCCCEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSCCC------
T ss_pred             EEEecCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCcCCcCCCChHHEEEcCCCCEEEecCccCccccc
Confidence            9999999999999986  346899999999999999999999   77899999999999999999999999999987643


Q ss_pred             CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      .... ......||+.|+|||++.+..++.++|||||||++|||++|+.||......  ................      
T Consensus       187 ~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~~~~~~~~~~------  257 (309)
T 2h34_A          187 EKLT-QLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS--VMGAHINQAIPRPSTV------  257 (309)
T ss_dssp             -----------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH--HHHHHHHSCCCCGGGT------
T ss_pred             cccc-cccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH--HHHHHhccCCCCcccc------
Confidence            3211 223567999999999999889999999999999999999999999754322  1111111111000000      


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCC-CHHHHHHHHHhc
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARP-KMKSVLRMLLNA  832 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rp-s~~evl~~L~~~  832 (833)
                          ....+.++.+++.+||+.||++|| +++|+++.|+++
T Consensus       258 ----~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~  294 (309)
T 2h34_A          258 ----RPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAA  294 (309)
T ss_dssp             ----STTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHT
T ss_pred             ----CCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHH
Confidence                112234678899999999999999 999999999865

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=1.7e-42  Score=366.27  Aligned_cols=254  Identities=19%  Similarity=0.267  Sum_probs=205.3

Q ss_pred             HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      .+.|+..+.||+|+||.||+|... +|+.||||++.....  .....+.+.+|++++++++||||+++++++..++..++
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   82 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKL--SARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYL   82 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccC--CHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEE
Confidence            456888899999999999999974 799999999943221  12234678999999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC---ceeccceeeee
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE---PQIGDIELCKV  709 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~---~ki~dfgl~~~  709 (833)
                      ||||+++|+|.+.+..  ...+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.   +||+|||++..
T Consensus        83 v~e~~~~~~l~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~  157 (284)
T 3kk8_A           83 VFDLVTGGELFEDIVA--REFYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIE  157 (284)
T ss_dssp             EECCCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEE
T ss_pred             EEecCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEE
Confidence            9999999999998876  346899999999999999999999   788999999999999986655   99999999987


Q ss_pred             eCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      .....   ......||+.|+|||++.+..++.++||||+||++|||++|+.||.+.............. ...       
T Consensus       158 ~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~-~~~-------  226 (284)
T 3kk8_A          158 VNDSE---AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGA-YDY-------  226 (284)
T ss_dssp             CCSSC---BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTC-CCC-------
T ss_pred             cccCc---cccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhHHHHHHHhcc-ccC-------
Confidence            65332   2245689999999999999899999999999999999999999997654332211111111 000       


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                         ........+.++.+++.+||+.||++|||+.|++++
T Consensus       227 ---~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h  262 (284)
T 3kk8_A          227 ---PSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKV  262 (284)
T ss_dssp             ---CTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             ---CchhhcccCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence               000011234567899999999999999999999875

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=6e-42  Score=360.50  Aligned_cols=256  Identities=18%  Similarity=0.239  Sum_probs=206.9

Q ss_pred             HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~  631 (833)
                      ..++|+..+.||+|+||.||+|... +|+.||||++....   .....+.+.+|++++++++||||+++++++..++..+
T Consensus         5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   81 (276)
T 2yex_A            5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR---AVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQY   81 (276)
T ss_dssp             HHHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGG---CTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEE
T ss_pred             eecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeecc---chhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEE
Confidence            4578999999999999999999975 79999999984221   1223568999999999999999999999999999999


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      +||||+++|+|.+++..  ...+++.++..++.|+++||+|||   +.+|+||||||+||+++.++.+|++|||.+....
T Consensus        82 lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~  156 (276)
T 2yex_A           82 LFLEYCSGGELFDRIEP--DIGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFR  156 (276)
T ss_dssp             EEEECCTTEEGGGGSBT--TTBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECE
T ss_pred             EEEEecCCCcHHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCChHHEEEccCCCEEEeeCCCccccC
Confidence            99999999999999975  346899999999999999999999   7899999999999999999999999999998764


Q ss_pred             CCCCCCccccccccccccccccccCCcc-cccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTMRV-TMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                      ............||+.|+|||++.+..+ +.++|||||||++|||++|+.||....................    .   
T Consensus       157 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~----~---  229 (276)
T 2yex_A          157 YNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYL----N---  229 (276)
T ss_dssp             ETTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTTS----T---
T ss_pred             CCcchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhccccc----C---
Confidence            3322222345689999999999987665 7899999999999999999999985443221111111110000    0   


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                           .....+..+.+++.+||+.||++|||++|++++
T Consensus       230 -----~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  262 (276)
T 2yex_A          230 -----PWKKIDSAPLALLHKILVENPSARITIPDIKKD  262 (276)
T ss_dssp             -----TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             -----chhhcCHHHHHHHHHHCCCCchhCCCHHHHhcC
Confidence                 011234467899999999999999999999864

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=4.4e-42  Score=365.89  Aligned_cols=258  Identities=10%  Similarity=0.071  Sum_probs=207.1

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~l  632 (833)
                      +.|+..+.||+|+||.||+|.. .+|+.||||++...      ...+.+.+|+++++++ +||||+++++++......++
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~------~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~l   83 (298)
T 1csn_A           10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRR------SDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVL   83 (298)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECC------TTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEE
T ss_pred             cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccC------CccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEE
Confidence            4577889999999999999996 68999999998422      1245689999999999 79999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC-----ceeccceee
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE-----PQIGDIELC  707 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~-----~ki~dfgl~  707 (833)
                      ||||+ +|+|.++++.. ...+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.     +||+|||++
T Consensus        84 v~e~~-~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~  158 (298)
T 1csn_A           84 VIDLL-GPSLEDLLDLC-GRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMV  158 (298)
T ss_dssp             EEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTC
T ss_pred             EEEec-CCCHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEeccCCCCCCCeEEEEECccc
Confidence            99999 99999999864 345999999999999999999999   789999999999999987776     999999999


Q ss_pred             eeeCCCCCC-----CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc--HHHHHHHhhcccc
Q 003296          708 KVIDPSKST-----GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE--LAKWVLRNSAQQD  780 (833)
Q Consensus       708 ~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~--~~~~~~~~~~~~~  780 (833)
                      +........     .......||+.|+|||++.+..++.++|||||||++|||++|+.||.+...  .............
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~  238 (298)
T 1csn_A          159 KFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQ  238 (298)
T ss_dssp             EESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHH
T ss_pred             cccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhcc
Confidence            877543221     112456799999999999998999999999999999999999999985322  1111111100000


Q ss_pred             cccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          781 KLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       781 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      . .        .........+.++.+++.+||+.||++|||++||++.|+++
T Consensus       239 ~-~--------~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~  281 (298)
T 1csn_A          239 S-T--------PLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKV  281 (298)
T ss_dssp             H-S--------CHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHH
T ss_pred             C-c--------cHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHH
Confidence            0 0        00000012345788999999999999999999999999875

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-42  Score=374.30  Aligned_cols=256  Identities=20%  Similarity=0.286  Sum_probs=196.5

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceE----EEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSY----FIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS  629 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~v----avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~  629 (833)
                      .+|+..+.||+|+||.||+|.. .+|+.|    |+|.+...   ......+.|.+|++++++++|||||+++++|..++ 
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~---~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-   90 (327)
T 3lzb_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA---TSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-   90 (327)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCC---SSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-
T ss_pred             hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccc---cCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-
Confidence            4577889999999999999996 456554    66666321   12345678999999999999999999999998754 


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                      .++|+||+++|+|.+++... ...+++..++.++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++.
T Consensus        91 ~~~v~~~~~~g~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~  166 (327)
T 3lzb_A           91 VQLITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKL  166 (327)
T ss_dssp             EEEEECCCSSCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTC---
T ss_pred             ceEEEEecCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHh---hCCCcCCCCCHHHEEEcCCCCEEEccCcceeE
Confidence            88999999999999999864 346899999999999999999999   78899999999999999999999999999987


Q ss_pred             eCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ..............||+.|+|||++.+..++.++|||||||++|||++ |+.||.+...... .... ......      
T Consensus       167 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~-~~~~-~~~~~~------  238 (327)
T 3lzb_A          167 LGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEI-SSIL-EKGERL------  238 (327)
T ss_dssp             -------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH-HHHH-HTTCCC------
T ss_pred             ccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH-HHHH-HcCCCC------
Confidence            654433323344567889999999999899999999999999999999 9999975433211 1111 110000      


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ...      ...+.++.+++.+||+.||++|||+.|+++.|+++
T Consensus       239 ~~~------~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~  276 (327)
T 3lzb_A          239 PQP------PICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKM  276 (327)
T ss_dssp             CCC------TTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CCC------ccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence            000      11234678999999999999999999999999865

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=1.3e-42  Score=370.67  Aligned_cols=267  Identities=21%  Similarity=0.267  Sum_probs=205.1

Q ss_pred             HhcCCccccccCcccEEEEEEc-----CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC--
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS--  627 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~--  627 (833)
                      ..|+..+.||+|+||.||+|+.     .+|+.||||++....   .....+.+.+|++++++++||||+++++++..+  
T Consensus        21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   97 (302)
T 4e5w_A           21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES---GGNHIADLKKEIEILRNLYHENIVKYKGICTEDGG   97 (302)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC--------CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---
T ss_pred             hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccc---cchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCC
Confidence            3477789999999999999983     478999999995222   233457899999999999999999999999876  


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                      ...++||||+++|+|.+++... ...+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||++
T Consensus        98 ~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~  173 (302)
T 4e5w_A           98 NGIKLIMEFLPSGSLKEYLPKN-KNKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLT  173 (302)
T ss_dssp             CCEEEEEECCTTCBHHHHHHHH-TTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTC
T ss_pred             ceEEEEEEeCCCCcHHHHHHhc-cccCCHHHHHHHHHHHHHHHHHhh---cCCcccCCCchheEEEcCCCCEEECccccc
Confidence            6689999999999999999653 346999999999999999999999   789999999999999999999999999999


Q ss_pred             eeeCCCCCC-CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc--c---
Q 003296          708 KVIDPSKST-GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD--K---  781 (833)
Q Consensus       708 ~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~--~---  781 (833)
                      +........ .......||..|+|||++.+..++.++||||+||++|||+||+.|+......  +.........  .   
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~~~~~~~~  251 (302)
T 4e5w_A          174 KAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMAL--FLKMIGPTHGQMTVTR  251 (302)
T ss_dssp             EECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHH--HHHHHCSCCGGGHHHH
T ss_pred             ccccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhH--HhhccCCcccccCHHH
Confidence            887544321 1223467899999999999889999999999999999999999987522111  0000000000  0   


Q ss_pred             ccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          782 LDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       782 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ....+.......  .....+.++.+++.+||+.||++|||+.|+++.|+++
T Consensus       252 ~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l  300 (302)
T 4e5w_A          252 LVNTLKEGKRLP--CPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEAL  300 (302)
T ss_dssp             HHHHHHTTCCCC--CCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHhccCCCC--CCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            000000000000  0112345788999999999999999999999999875

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=7.4e-42  Score=378.79  Aligned_cols=269  Identities=15%  Similarity=0.170  Sum_probs=208.9

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC--ceE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD--SAY  631 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~--~~~  631 (833)
                      ..|...+.||+|+||.||+|+.. +|+.||||++...   ......+.+.+|++++++++|||||++++++...+  ..+
T Consensus         9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~   85 (396)
T 4eut_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNI---SFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKV   85 (396)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGG---GGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEE
T ss_pred             CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccc---cccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeE
Confidence            35777899999999999999975 6999999999522   12334678899999999999999999999998765  689


Q ss_pred             EEEeeCCCCChhhhhhcCCC-CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee----CCCCCceecccee
Q 003296          632 LFYEYAPKGTLFDVLHGCLE-NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL----KSLKEPQIGDIEL  706 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill----~~~~~~ki~dfgl  706 (833)
                      +|||||++|+|.++++.... ..+++..++.++.|++.||+|||   +.+|+||||||+|||+    +.++.+||+|||+
T Consensus        86 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~  162 (396)
T 4eut_A           86 LIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGA  162 (396)
T ss_dssp             EEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEECTTSCEEEEECCGGG
T ss_pred             EEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEEECCcCHHHEEEeecCCCceeEEEecCCC
Confidence            99999999999999986422 24999999999999999999999   7889999999999999    7778899999999


Q ss_pred             eeeeCCCCCCCccccccccccccccccccC--------CcccccCcchhhHHHHHHHHhCCCcccCCc---cHHHHHHHh
Q 003296          707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAYT--------MRVTMAGNVYSFGVILLELLTGKTAVNQGN---ELAKWVLRN  775 (833)
Q Consensus       707 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~---~~~~~~~~~  775 (833)
                      ++......   ......||+.|+|||++.+        ..++.++|||||||++|||++|+.||....   ...+.....
T Consensus       163 a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~  239 (396)
T 4eut_A          163 ARELEDDE---QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKI  239 (396)
T ss_dssp             CEECCCGG---GSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHH
T ss_pred             ceEccCCC---ccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHH
Confidence            98765432   2245679999999998764        568899999999999999999999997322   112222111


Q ss_pred             hcccc--ccccc---------ccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          776 SAQQD--KLDHI---------LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       776 ~~~~~--~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .....  .....         .....+............+.+++.+||+.||++||+++|++++++++
T Consensus       240 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~i  307 (396)
T 4eut_A          240 ITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDI  307 (396)
T ss_dssp             HHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHH
T ss_pred             hcCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHH
Confidence            11100  00000         00011111122245667788999999999999999999999998764

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=5.8e-42  Score=369.75  Aligned_cols=258  Identities=20%  Similarity=0.249  Sum_probs=206.0

Q ss_pred             HHHHhcCCc-cccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCC
Q 003296          552 AMEAVANPL-NVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASD  628 (833)
Q Consensus       552 ~~~~~~~~~-~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~  628 (833)
                      ...+.|... +.||+|+||.||+|... +|+.||||++....  ........+.+|++++++++ ||||++++++|...+
T Consensus        25 ~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~  102 (327)
T 3lm5_A           25 NFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRR--RGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTS  102 (327)
T ss_dssp             HHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEE--TTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS
T ss_pred             hhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhh--cchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCC
Confidence            556677776 89999999999999975 79999999995322  22334678999999999995 699999999999999


Q ss_pred             ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC---CCCceeccce
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS---LKEPQIGDIE  705 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~---~~~~ki~dfg  705 (833)
                      ..++||||+++|+|.+++.......+++.++..++.|++.||+|||   +.+|+||||||+||+++.   ++.+||+|||
T Consensus       103 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH---~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg  179 (327)
T 3lm5_A          103 EIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLH---QNNIVHLDLKPQNILLSSIYPLGDIKIVDFG  179 (327)
T ss_dssp             EEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESCBTTBCCEEECCGG
T ss_pred             eEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCChHHEEEecCCCCCcEEEeeCc
Confidence            9999999999999999997654567999999999999999999999   789999999999999997   7899999999


Q ss_pred             eeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccc
Q 003296          706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHI  785 (833)
Q Consensus       706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~  785 (833)
                      +++......   ......||+.|+|||++.+..++.++|||||||++|||++|+.||....................   
T Consensus       180 ~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~---  253 (327)
T 3lm5_A          180 MSRKIGHAC---ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYS---  253 (327)
T ss_dssp             GCEEC------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCC---
T ss_pred             cccccCCcc---ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhcccccC---
Confidence            998765332   22456899999999999988999999999999999999999999976544332222111110000   


Q ss_pred             ccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          786 LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       786 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                              ..........+.+++.+||+.||++|||++|++++
T Consensus       254 --------~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h  288 (327)
T 3lm5_A          254 --------EETFSSVSQLATDFIQSLLVKNPEKRPTAEICLSH  288 (327)
T ss_dssp             --------TTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred             --------chhhcccCHHHHHHHHHHcCCChhhCcCHHHHhCC
Confidence                    00111234567899999999999999999999875

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=2.9e-42  Score=361.03  Aligned_cols=254  Identities=20%  Similarity=0.248  Sum_probs=207.6

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +.|+..+.||+|+||.||+|...++..||||++....     ...+.+.+|++++++++||||+++++++..++..++||
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~-----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   82 (267)
T 3t9t_A            8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-----MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVT   82 (267)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTT-----BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccC-----CCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEE
Confidence            3577788999999999999999889999999995221     23468999999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.+++... ...+++..+..++.|+++||+|||   +.+|+||||||+||+++.++.+|++|||+++......
T Consensus        83 e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~  158 (267)
T 3t9t_A           83 EFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ  158 (267)
T ss_dssp             CCCTTCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHH
T ss_pred             eCCCCCcHHHHHhhC-cccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEECCCCCEEEccccccccccccc
Confidence            999999999999864 346899999999999999999999   7889999999999999999999999999998653221


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      . .......||+.|+|||++.+..++.++|||||||++|||++ |+.||...... ......... ..  .    .... 
T Consensus       159 ~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~-~~~~~i~~~-~~--~----~~~~-  228 (267)
T 3t9t_A          159 Y-TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS-EVVEDISTG-FR--L----YKPR-  228 (267)
T ss_dssp             H-HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH-HHHHHHHTT-CC--C----CCCT-
T ss_pred             c-cccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHH-HHHHHHhcC-Cc--C----CCCc-
Confidence            1 11133567889999999988889999999999999999999 89999754332 221111111 00  0    0000 


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                           ..+.++.+++.+||+.||++|||++|++++|+++
T Consensus       229 -----~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l  262 (267)
T 3t9t_A          229 -----LASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEI  262 (267)
T ss_dssp             -----TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -----cCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence                 1234678999999999999999999999999876

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=4.6e-42  Score=362.82  Aligned_cols=256  Identities=17%  Similarity=0.215  Sum_probs=205.2

Q ss_pred             HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhh--hccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIF--QLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~--~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      .+.|+..+.||+|+||.||+|... +|+.||||+++......  .....+.|.+|++++++++||||+++++++..++..
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~   83 (283)
T 3bhy_A            4 EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDV   83 (283)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             hhhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeE
Confidence            467889999999999999999975 79999999985332111  112467899999999999999999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC----Cceecccee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK----EPQIGDIEL  706 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~----~~ki~dfgl  706 (833)
                      ++||||+++|+|.+++..  ...+++.++..++.|+++||+|||   +.+|+||||||+||+++.++    .+||+|||+
T Consensus        84 ~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~  158 (283)
T 3bhy_A           84 VLILELVSGGELFDFLAE--KESLTEDEATQFLKQILDGVHYLH---SKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGI  158 (283)
T ss_dssp             EEEEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSSSSCCEEECCCTT
T ss_pred             EEEEeecCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChHHEEEecCCCCCCceEEEeccc
Confidence            999999999999999975  346899999999999999999999   78999999999999998877    799999999


Q ss_pred             eeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc
Q 003296          707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL  786 (833)
Q Consensus       707 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  786 (833)
                      ++......   ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+......+....... ..     
T Consensus       159 ~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~-~~-----  229 (283)
T 3bhy_A          159 AHKIEAGN---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVN-YD-----  229 (283)
T ss_dssp             CEECC-----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTC-CC-----
T ss_pred             ceeccCCC---cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHHHHHHhHhcc-cC-----
Confidence            98764332   1234679999999999998899999999999999999999999997654322221111100 00     


Q ss_pred             cccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          787 DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       787 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                           .........+..+.+++.+||+.||++|||+.|++++
T Consensus       230 -----~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h  266 (283)
T 3bhy_A          230 -----FDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEH  266 (283)
T ss_dssp             -----CCHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHC
T ss_pred             -----CcchhcccCCHHHHHHHHHHccCCHhHCcCHHHHHhC
Confidence                 0011111234568899999999999999999999975

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=1.5e-42  Score=395.34  Aligned_cols=255  Identities=21%  Similarity=0.241  Sum_probs=208.5

Q ss_pred             HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~  631 (833)
                      ..+.|+..+.||+|+||.||+|... +|+.||||++... ........+.+.+|++++++++|||||+++++|...+..|
T Consensus        24 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~-~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~  102 (484)
T 3nyv_A           24 FSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKR-QVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFY  102 (484)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETT-TCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             ccCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhh-hcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            4567999999999999999999975 8999999999422 2222345678999999999999999999999999999999


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee---CCCCCceeccceeee
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL---KSLKEPQIGDIELCK  708 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill---~~~~~~ki~dfgl~~  708 (833)
                      +|||||++|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+|||+   +.++.+||+|||+++
T Consensus       103 lv~e~~~~~~L~~~~~~--~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~  177 (484)
T 3nyv_A          103 LVGEVYTGGELFDEIIS--RKRFSEVDAARIIRQVLSGITYMH---KNKIVHRDLKPENLLLESKSKDANIRIIDFGLST  177 (484)
T ss_dssp             EEECCCCSCBHHHHHHT--CSCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHH
T ss_pred             EEEecCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeE
Confidence            99999999999999976  356899999999999999999999   7789999999999999   467899999999998


Q ss_pred             eeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          709 VIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       709 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ......   .....+||+.|+|||++.+ .|+.++||||+||++|||++|+.||.+...... .........        
T Consensus       178 ~~~~~~---~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~-~~~i~~~~~--------  244 (484)
T 3nyv_A          178 HFEASK---KMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEYDI-LKKVEKGKY--------  244 (484)
T ss_dssp             HBCCCC---SHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHCCC--------
T ss_pred             Eccccc---ccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHHH-HHHHHcCCC--------
Confidence            765433   2345689999999998866 699999999999999999999999986543322 111111100        


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        ....+.+...+.++.+++.+||+.||++|||+.|+++|
T Consensus       245 --~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h  282 (484)
T 3nyv_A          245 --TFELPQWKKVSESAKDLIRKMLTYVPSMRISARDALDH  282 (484)
T ss_dssp             --CCCSGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             --CCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhhC
Confidence              00111122345578899999999999999999999875

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=2e-42  Score=365.89  Aligned_cols=254  Identities=20%  Similarity=0.254  Sum_probs=199.4

Q ss_pred             HHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~  631 (833)
                      ..+.|...+.||+|+||.||+|.. .+|..||||++...   ......+.+.+|++++++++|||||++++++.+.+..+
T Consensus        20 i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~---~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   96 (285)
T 3is5_A           20 IDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKD---RSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMY   96 (285)
T ss_dssp             HHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGG---GCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhheeecceeccCCCeEEEEEEEccCCceEEEEEeecc---ccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEE
Confidence            446788999999999999999997 47899999999522   12334678999999999999999999999999999999


Q ss_pred             EEEeeCCCCChhhhhhcC--CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee---CCCCCceecccee
Q 003296          632 LFYEYAPKGTLFDVLHGC--LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL---KSLKEPQIGDIEL  706 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill---~~~~~~ki~dfgl  706 (833)
                      +||||+++|+|.+++...  ....+++..+..++.|+++||+|||   +.+|+||||||+||++   +.++.+||+|||+
T Consensus        97 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~  173 (285)
T 3is5_A           97 IVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFH---SQHVVHKDLKPENILFQDTSPHSPIKIIDFGL  173 (285)
T ss_dssp             EEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEESSSSTTCCEEECCCCC
T ss_pred             EEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCCCHHHEEEecCCCCCCEEEEeeec
Confidence            999999999999998642  1356999999999999999999999   7899999999999999   4567899999999


Q ss_pred             eeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc
Q 003296          707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL  786 (833)
Q Consensus       707 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  786 (833)
                      ++......   ......||+.|+|||++. ..++.++|||||||++|||++|+.||.+.... ..............   
T Consensus       174 a~~~~~~~---~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~-~~~~~~~~~~~~~~---  245 (285)
T 3is5_A          174 AELFKSDE---HSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLE-EVQQKATYKEPNYA---  245 (285)
T ss_dssp             CCC-------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHCCCCCC---
T ss_pred             ceecCCcc---cCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHH-HHHhhhccCCcccc---
Confidence            98664332   224567999999999875 56899999999999999999999999754322 21111111100000   


Q ss_pred             cccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          787 DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       787 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                       ...       .....++.+++.+||+.||++|||+.||+++
T Consensus       246 -~~~-------~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h  279 (285)
T 3is5_A          246 -VEC-------RPLTPQAVDLLKQMLTKDPERRPSAAQVLHH  279 (285)
T ss_dssp             -C---------CCCCHHHHHHHHHHTCSCTTTSCCHHHHHTS
T ss_pred             -ccc-------CcCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence             000       0123467799999999999999999999874

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=4.5e-42  Score=391.22  Aligned_cols=255  Identities=22%  Similarity=0.244  Sum_probs=206.2

Q ss_pred             HHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      ...+.|+..+.||+|+||+||+|... +|+.||||++...  .......+.+.+|++++++++|||||++++++...+..
T Consensus        19 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~   96 (486)
T 3mwu_A           19 TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKA--SAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSF   96 (486)
T ss_dssp             HHHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHH--HHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             ChhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecc--cccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEE
Confidence            45578999999999999999999974 8999999999422  12234567899999999999999999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC---CCCCceeccceee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK---SLKEPQIGDIELC  707 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~---~~~~~ki~dfgl~  707 (833)
                      |+|||||++|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+|||++   .++.+||+|||++
T Consensus        97 ~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a  171 (486)
T 3mwu_A           97 YIVGELYTGGELFDEIIK--RKRFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLS  171 (486)
T ss_dssp             EEEECCCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEESSSSTTCCEEECSCSCT
T ss_pred             EEEEEcCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEEECCcC
Confidence            999999999999999876  346899999999999999999999   78999999999999995   4567999999999


Q ss_pred             eeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc
Q 003296          708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (833)
                      +......   .....+||+.|+|||++.+ .|+.++||||+||++|||++|+.||.+...... ........        
T Consensus       172 ~~~~~~~---~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~-~~~i~~~~--------  238 (486)
T 3mwu_A          172 TCFQQNT---KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDI-LKRVETGK--------  238 (486)
T ss_dssp             TTBCCC-------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHTC--------
T ss_pred             eECCCCC---ccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHhCC--------
Confidence            8664332   2245689999999999875 599999999999999999999999976543221 11111110        


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        .....+.+...+.++.+++.+||+.||++|||+.|+++|
T Consensus       239 --~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~h  277 (486)
T 3mwu_A          239 --YAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEH  277 (486)
T ss_dssp             --CCSCSGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHC
T ss_pred             --CCCCCcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence              000111122334578899999999999999999999986

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.1e-42  Score=374.85  Aligned_cols=263  Identities=16%  Similarity=0.216  Sum_probs=196.0

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      .|...+.||+|+||.||+|+.. +|+.||||++.....   ......+.+|++++++++|||||++++++..++..++||
T Consensus         3 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   79 (324)
T 3mtl_A            3 TYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE---EGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVF   79 (324)
T ss_dssp             SEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC---------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEE
T ss_pred             ceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccc---cccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEe
Confidence            5777899999999999999975 799999999953221   122335668999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||++ |+|.+++... ...+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++......
T Consensus        80 e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~  154 (324)
T 3mtl_A           80 EYLD-KDLKQYLDDC-GNIINMHNVKLFLFQLLRGLAYCH---RQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPT  154 (324)
T ss_dssp             ECCS-EEHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCCGGGEEECTTCCEEECSSSEEECC----
T ss_pred             cccc-cCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCcCHHHEEECCCCCEEEccCcccccccCCc
Confidence            9997 5999998864 346899999999999999999999   7899999999999999999999999999998654322


Q ss_pred             CCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHH--Hhhccc--ccccccccc-
Q 003296          715 STGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVL--RNSAQQ--DKLDHILDF-  788 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~--~~~~~~--~~~~~~~~~-  788 (833)
                      .  ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.........  ......  ......... 
T Consensus       155 ~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  232 (324)
T 3mtl_A          155 K--TYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNE  232 (324)
T ss_dssp             ----------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCH
T ss_pred             c--ccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcch
Confidence            1  2245678999999999876 5689999999999999999999999986544332211  111110  000010000 


Q ss_pred             --------cccCC--chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          789 --------NVSRT--SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       789 --------~~~~~--~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                              .....  .........++.+++.+||+.||++|||++|+++|
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  282 (324)
T 3mtl_A          233 EFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKH  282 (324)
T ss_dssp             HHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             hhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence                    00000  00011234567899999999999999999999875

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.3e-41  Score=367.01  Aligned_cols=264  Identities=20%  Similarity=0.242  Sum_probs=200.2

Q ss_pred             HHHHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcC--CCCCcccceEEEecC--
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL--SNSNVMTPLAYVLAS--  627 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l--~H~niv~~~~~~~~~--  627 (833)
                      ...+.|+..+.||+|+||.||+|+.. |+.||||++...       ....+.+|.+++...  +|||||++++++...  
T Consensus        34 ~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~-------~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~  105 (337)
T 3mdy_A           34 TIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT-------EEASWFRETEIYQTVLMRHENILGFIAADIKGTG  105 (337)
T ss_dssp             THHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG-------GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCG
T ss_pred             ccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc-------ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCC
Confidence            45678999999999999999999874 999999998422       134566677776665  899999999999887  


Q ss_pred             --CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCC-----CCCeeecCCCccceeeCCCCCce
Q 003296          628 --DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFT-----SNPILLLDLSTRNIFLKSLKEPQ  700 (833)
Q Consensus       628 --~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~-----~~~iiHrdlk~~Nill~~~~~~k  700 (833)
                        ...++||||+++|+|.++++.   ..+++..+..++.|++.||+|||+.+     .++|+||||||+||+++.++.+|
T Consensus       106 ~~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~k  182 (337)
T 3mdy_A          106 SWTQLYLITDYHENGSLYDYLKS---TTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCC  182 (337)
T ss_dssp             GGCEEEEEECCCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEE
T ss_pred             CCCceEEEEeccCCCcHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEE
Confidence              679999999999999999975   35999999999999999999999321     12899999999999999999999


Q ss_pred             eccceeeeeeCCCCCCC--ccccccccccccccccccCCccccc------CcchhhHHHHHHHHhC----------CCcc
Q 003296          701 IGDIELCKVIDPSKSTG--SLSTVAGSVGYIPPEYAYTMRVTMA------GNVYSFGVILLELLTG----------KTAV  762 (833)
Q Consensus       701 i~dfgl~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~------~Dv~S~Gvvl~elltg----------~~p~  762 (833)
                      |+|||+++.........  ......||+.|+|||++.+..++.+      +|||||||++|||+||          +.||
T Consensus       183 l~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~  262 (337)
T 3mdy_A          183 IADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPY  262 (337)
T ss_dssp             ECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTT
T ss_pred             EEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccH
Confidence            99999998764332211  1134689999999999887665554      9999999999999999          5666


Q ss_pred             cCCcc---HHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          763 NQGNE---LAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       763 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .....   ........... ..    ..+.... .......+.++.+++.+||+.||++|||+.||+++|+++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~-~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l  329 (337)
T 3mdy_A          263 HDLVPSDPSYEDMREIVCI-KK----LRPSFPN-RWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKM  329 (337)
T ss_dssp             TTTSCSSCCHHHHHHHHTT-SC----CCCCCCG-GGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHH
T ss_pred             hhhcCCCCchhhhHHHHhh-hc----cCccccc-cchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHH
Confidence            43211   11111111110 01    1111111 111225667899999999999999999999999999875

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=4.7e-42  Score=375.85  Aligned_cols=258  Identities=21%  Similarity=0.297  Sum_probs=208.0

Q ss_pred             HHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccch----hhhccChhHHHHHHHHHhcC-CCCCcccceEEEe
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDK----IFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVL  625 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~----~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~  625 (833)
                      ...+.|+..+.||+|+||.||+|++. +|+.||||++.....    .......+.+.+|+++++++ +||||+++++++.
T Consensus        91 ~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~  170 (365)
T 2y7j_A           91 EFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYE  170 (365)
T ss_dssp             HHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred             hhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEe
Confidence            56778999999999999999999985 799999999853221    11112245788999999999 7999999999999


Q ss_pred             cCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccce
Q 003296          626 ASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIE  705 (833)
Q Consensus       626 ~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfg  705 (833)
                      ..+..|+||||+++|+|.+++..  ...+++..+..++.|++.||.|||   +.+|+||||||+||+++.++.+|++|||
T Consensus       171 ~~~~~~lv~e~~~g~~L~~~l~~--~~~l~~~~~~~i~~qi~~~L~~LH---~~gi~H~Dlkp~NIl~~~~~~ikl~DfG  245 (365)
T 2y7j_A          171 SSSFMFLVFDLMRKGELFDYLTE--KVALSEKETRSIMRSLLEAVSFLH---ANNIVHRDLKPENILLDDNMQIRLSDFG  245 (365)
T ss_dssp             BSSEEEEEECCCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCT
T ss_pred             eCCEEEEEEEeCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEEEecC
Confidence            99999999999999999999975  346999999999999999999999   7799999999999999999999999999


Q ss_pred             eeeeeCCCCCCCccccccccccccccccccC------CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccc
Q 003296          706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT------MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQ  779 (833)
Q Consensus       706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~  779 (833)
                      ++.......   .....+||+.|+|||++.+      ..++.++|||||||++|||++|+.||............ ... 
T Consensus       246 ~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~i-~~~-  320 (365)
T 2y7j_A          246 FSCHLEPGE---KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMI-MEG-  320 (365)
T ss_dssp             TCEECCTTC---CBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH-HHT-
T ss_pred             cccccCCCc---ccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHHHHHHHH-HhC-
Confidence            998775433   2245789999999998753      35889999999999999999999999764432221111 110 


Q ss_pred             ccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          780 DKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                               ......+.+...+.++.+++.+||+.||++|||+.|++++
T Consensus       321 ---------~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~h  360 (365)
T 2y7j_A          321 ---------QYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQH  360 (365)
T ss_dssp             ---------CCCCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             ---------CCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence                     0000111111234568899999999999999999999975

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=3.1e-42  Score=365.37  Aligned_cols=249  Identities=18%  Similarity=0.289  Sum_probs=199.9

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CC-------ceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SG-------MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA  626 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~-------~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~  626 (833)
                      ++|...+.||+|+||.||+|+.. +|       ..||+|++...    .....+.|.+|++++++++|||||++++++..
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   83 (289)
T 4fvq_A            8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKA----HRNYSESFFEAASMMSKLSHKHLVLNYGVCVC   83 (289)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGG----GGGGHHHHHHHHHHHHTSCCTTBCCEEEEECC
T ss_pred             hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccc----cHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEe
Confidence            46778899999999999999874 34       57999998422    22345789999999999999999999999999


Q ss_pred             CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC--------
Q 003296          627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE--------  698 (833)
Q Consensus       627 ~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~--------  698 (833)
                      ++..++||||+++|+|.+++... ...+++..+..++.|+++||+|||   +.+|+||||||+||+++.++.        
T Consensus        84 ~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~  159 (289)
T 4fvq_A           84 GDENILVQEFVKFGSLDTYLKKN-KNCINILWKLEVAKQLAAAMHFLE---ENTLIHGNVCAKNILLIREEDRKTGNPPF  159 (289)
T ss_dssp             TTCCEEEEECCTTCBHHHHHHHT-GGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEEECCBGGGTBCCE
T ss_pred             CCCCEEEEECCCCCCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHh---hCCeECCCcCcceEEEecCCcccccccce
Confidence            99999999999999999999863 234899999999999999999999   788999999999999998887        


Q ss_pred             ceeccceeeeeeCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhc
Q 003296          699 PQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSA  777 (833)
Q Consensus       699 ~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~  777 (833)
                      +|++|||+++....      .....||+.|+|||++.+ ..++.++|||||||++|||++|..|+...............
T Consensus       160 ~kl~Dfg~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~~  233 (289)
T 4fvq_A          160 IKLSDPGISITVLP------KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYED  233 (289)
T ss_dssp             EEECCCCSCTTTSC------HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHT
T ss_pred             eeeccCcccccccC------ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHHHHHhhc
Confidence            89999998864321      134568999999999887 67899999999999999999966555433333222211111


Q ss_pred             ccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          778 QQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      . ....    ..          .+.++.+++.+||+.||++|||++|++++|+++
T Consensus       234 ~-~~~~----~~----------~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l  273 (289)
T 4fvq_A          234 R-HQLP----AP----------KAAELANLINNCMDYEPDHRPSFRAIIRDLNSL  273 (289)
T ss_dssp             T-CCCC----CC----------SSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTC
T ss_pred             c-CCCC----CC----------CCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHh
Confidence            1 1110    00          123567899999999999999999999999875

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=1.2e-42  Score=373.59  Aligned_cols=260  Identities=19%  Similarity=0.241  Sum_probs=207.8

Q ss_pred             HHhcCCccccccCcccEEEEEEc------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEec
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLA  626 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~  626 (833)
                      .+.|...+.||+|+||.||+|..      .+++.||||++.....   ....+.+.+|+++++++ +|||||+++++|..
T Consensus        26 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~  102 (316)
T 2xir_A           26 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT---HSEHRALMSELKILIHIGHHLNVVNLLGACTK  102 (316)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC---HHHHHHHHHHHHHHHHHCCCTTBCCEEEEECC
T ss_pred             hhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCC---cHHHHHHHHHHHHHHhcccCCCeeeEEEEEec
Confidence            45788889999999999999973      3678999999953211   12346799999999999 79999999999987


Q ss_pred             CC-ceEEEEeeCCCCChhhhhhcCCC--------------CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccce
Q 003296          627 SD-SAYLFYEYAPKGTLFDVLHGCLE--------------NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNI  691 (833)
Q Consensus       627 ~~-~~~lv~ey~~~g~L~~~l~~~~~--------------~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Ni  691 (833)
                      ++ ..++||||+++|+|.+++.....              ..+++..+..++.|+++||+|||   +.+|+||||||+||
T Consensus       103 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dikp~Ni  179 (316)
T 2xir_A          103 PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNI  179 (316)
T ss_dssp             TTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGE
T ss_pred             CCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHH---hCCcccccCccceE
Confidence            65 49999999999999999986432              12889999999999999999999   78999999999999


Q ss_pred             eeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHH
Q 003296          692 FLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAK  770 (833)
Q Consensus       692 ll~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~  770 (833)
                      +++.++.+|++|||+++...............||+.|+|||++.+..++.++|||||||++|||+| |+.||.+......
T Consensus       180 l~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~  259 (316)
T 2xir_A          180 LLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE  259 (316)
T ss_dssp             EECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHH
T ss_pred             EECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchhHH
Confidence            999999999999999987654333223345678999999999988889999999999999999998 9999975443222


Q ss_pred             HHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          771 WVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ........ ...      ....      ....++.+++.+||+.||++|||+.||+++|+++
T Consensus       260 ~~~~~~~~-~~~------~~~~------~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~  308 (316)
T 2xir_A          260 FCRRLKEG-TRM------RAPD------YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL  308 (316)
T ss_dssp             HHHHHHHT-CCC------CCCT------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHhccC-ccC------CCCC------CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            22111111 100      0000      1234678999999999999999999999999875

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.3e-42  Score=378.61  Aligned_cols=255  Identities=21%  Similarity=0.279  Sum_probs=191.1

Q ss_pred             cCCccccccCcccEEEEEEcC--C--CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec-CCceE
Q 003296          557 ANPLNVELKTRFSTYYKAVMP--S--GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA-SDSAY  631 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~--~--~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~-~~~~~  631 (833)
                      |+..+.||+|+||.||+|...  +  +..||||.++...   .....++|.+|++++++++|||||+++++|.. ++..+
T Consensus        91 ~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~  167 (373)
T 3c1x_A           91 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT---DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL  167 (373)
T ss_dssp             EEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCS---CSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCE
T ss_pred             eecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCC---CHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeE
Confidence            455688999999999999863  2  2468999984221   22335789999999999999999999999765 46789


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      +||||+++|+|.++++.. ...+++.++..++.|+++||+|||   +.+|+||||||+||+++.++.+||+|||+++...
T Consensus       168 lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~  243 (373)
T 3c1x_A          168 VVLPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMY  243 (373)
T ss_dssp             EEEECCTTCBHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC-------
T ss_pred             EEEECCCCCCHHHHHhhc-ccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCccchheEEECCCCCEEEeecccccccc
Confidence            999999999999999753 345899999999999999999999   7899999999999999999999999999998664


Q ss_pred             CCCCC--CccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          712 PSKST--GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       712 ~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      .....  .......||+.|+|||++.+..++.++|||||||++|||+| |.+||.+........ ... ....   ...+
T Consensus       244 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~-~~~-~~~~---~~~p  318 (373)
T 3c1x_A          244 DKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITV-YLL-QGRR---LLQP  318 (373)
T ss_dssp             --------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHH-HHH-TTCC---CCCC
T ss_pred             ccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHH-HHH-cCCC---CCCC
Confidence            32211  11234567889999999998899999999999999999999 677776433211111 111 1010   0000


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                               ...+.++.+++.+||+.||++|||+.|++++|+++
T Consensus       319 ---------~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i  353 (373)
T 3c1x_A          319 ---------EYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAI  353 (373)
T ss_dssp             ---------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             ---------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence                     11234678999999999999999999999999875

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=1.4e-41  Score=359.33  Aligned_cols=249  Identities=19%  Similarity=0.280  Sum_probs=205.9

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||.||+|... +++.||||++. ..........+.+.+|++++++++||||+++++++.+++..++|
T Consensus        14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~-~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   92 (284)
T 2vgo_A           14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLF-KSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLM   92 (284)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEE-HHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEc-ccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEE
Confidence            46788899999999999999975 68899999994 22222334457899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++..  ...+++..+..++.|+++||+|||   +.+|+||||||+||+++.++.+|++|||++......
T Consensus        93 ~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~  167 (284)
T 2vgo_A           93 LEFAPRGELYKELQK--HGRFDEQRSATFMEELADALHYCH---ERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSL  167 (284)
T ss_dssp             ECCCTTEEHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTCCEEECCCTTCEECSSS
T ss_pred             EEeCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEEcCCCCEEEecccccccCccc
Confidence            999999999999986  346899999999999999999999   789999999999999999999999999999765432


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      .    .....||+.|+|||++.+..++.++|||||||++|||++|+.||.......... .....        +...+. 
T Consensus       168 ~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~-~~~~~--------~~~~~~-  233 (284)
T 2vgo_A          168 R----RRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHR-RIVNV--------DLKFPP-  233 (284)
T ss_dssp             C----BCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHH-HHHTT--------CCCCCT-
T ss_pred             c----cccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhHHHH-HHhcc--------ccCCCC-
Confidence            2    234679999999999999899999999999999999999999997544322211 11111        001111 


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                           ..+.++.+++.+||+.||++|||++|+++|
T Consensus       234 -----~~~~~~~~li~~~l~~~p~~Rps~~~ll~h  263 (284)
T 2vgo_A          234 -----FLSDGSKDLISKLLRYHPPQRLPLKGVMEH  263 (284)
T ss_dssp             -----TSCHHHHHHHHHHSCSSGGGSCCHHHHHTC
T ss_pred             -----cCCHHHHHHHHHHhhcCHhhCCCHHHHhhC
Confidence                 123467899999999999999999999874

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=3.2e-42  Score=369.30  Aligned_cols=265  Identities=16%  Similarity=0.200  Sum_probs=200.1

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +.|+..+.||+|+||.||+|... +|+.||||++.....  .....+.+.+|++++++++|||||++++++...+..++|
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (311)
T 4agu_A            3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESED--DPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLV   80 (311)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC---HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeecccc--chHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEE
Confidence            45778899999999999999974 699999999843221  112346788999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++++|.+++..  ...+++..+..++.|+++||+|||   +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus        81 ~e~~~~~~l~~~~~~--~~~~~~~~~~~i~~~l~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  155 (311)
T 4agu_A           81 FEYCDHTVLHELDRY--QRGVPEHLVKSITWQTLQAVNFCH---KHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGP  155 (311)
T ss_dssp             EECCSEEHHHHHHHT--SSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECC--
T ss_pred             EEeCCCchHHHHHhh--hcCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCc
Confidence            999999999998875  346899999999999999999999   789999999999999999999999999999876533


Q ss_pred             CCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc------------
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD------------  780 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~------------  780 (833)
                      ..  ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+................            
T Consensus       156 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (311)
T 4agu_A          156 SD--YYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTN  233 (311)
T ss_dssp             ------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTC
T ss_pred             cc--ccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccc
Confidence            22  2245679999999999875 56899999999999999999999999865543322111100000            


Q ss_pred             -ccc--ccccccccCC-chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          781 -KLD--HILDFNVSRT-SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       781 -~~~--~~~~~~~~~~-~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                       ...  ...++..... .......+.++.+++.+||+.||++|||++|+++|
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  285 (311)
T 4agu_A          234 QYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHH  285 (311)
T ss_dssp             GGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTS
T ss_pred             cccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhcC
Confidence             000  0000000000 00011234568899999999999999999999875

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.8e-43  Score=381.16  Aligned_cols=255  Identities=18%  Similarity=0.193  Sum_probs=203.4

Q ss_pred             HhcCCccccccCcccEEEEEEc----CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCc
Q 003296          555 AVANPLNVELKTRFSTYYKAVM----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDS  629 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~  629 (833)
                      ++|+..+.||+|+||.||+|+.    .+|+.||||+++...........+.+.+|+++++++ +|||||++++++..++.
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~  133 (355)
T 1vzo_A           54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  133 (355)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce
Confidence            4688899999999999999997    478999999995332222234456788999999999 69999999999999999


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                      .++|||||++|+|.+++..  ...+++.++..++.|+++||+|||   +.+|+||||||+|||++.++.+||+|||+++.
T Consensus       134 ~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~  208 (355)
T 1vzo_A          134 LHLILDYINGGELFTHLSQ--RERFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKE  208 (355)
T ss_dssp             EEEEECCCCSCBHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEESCSSEEEE
T ss_pred             EEEEeecCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCcEEEeeCCCCee
Confidence            9999999999999999986  346899999999999999999999   77899999999999999999999999999987


Q ss_pred             eCCCCCCCccccccccccccccccccC--CcccccCcchhhHHHHHHHHhCCCcccCCc---cHHHHHHHhhcccccccc
Q 003296          710 IDPSKSTGSLSTVAGSVGYIPPEYAYT--MRVTMAGNVYSFGVILLELLTGKTAVNQGN---ELAKWVLRNSAQQDKLDH  784 (833)
Q Consensus       710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~---~~~~~~~~~~~~~~~~~~  784 (833)
                      ...... ......+||+.|+|||++.+  ..++.++|||||||++|||++|+.||....   ..............    
T Consensus       209 ~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~----  283 (355)
T 1vzo_A          209 FVADET-ERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEP----  283 (355)
T ss_dssp             CCGGGG-GGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCC----
T ss_pred             cccCCC-CcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHHhccCC----
Confidence            643221 12345689999999999875  347899999999999999999999997432   22222211111100    


Q ss_pred             cccccccCCchhHHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHHH
Q 003296          785 ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARP-----KMKSVLRML  829 (833)
Q Consensus       785 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~L  829 (833)
                          ...      ......+.+++.+||+.||++||     +++|++++.
T Consensus       284 ----~~~------~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~  323 (355)
T 1vzo_A          284 ----PYP------QEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHL  323 (355)
T ss_dssp             ----CCC------TTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSG
T ss_pred             ----CCC------cccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCc
Confidence                011      12234678999999999999999     999998763

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=5.2e-42  Score=361.56  Aligned_cols=254  Identities=19%  Similarity=0.262  Sum_probs=206.3

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +.|+..+.||+|+||.||+|...++..||||++...     ....+.|.+|++++++++||||+++++++. .+..++||
T Consensus        13 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~-----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~   86 (279)
T 1qpc_A           13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-----SMSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIIT   86 (279)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTT-----SSCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEE
T ss_pred             HhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCC-----cccHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEE
Confidence            467788999999999999999888889999999422     124578999999999999999999999986 45689999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.+++.......+++.++..++.|+++||+|||   +.+|+||||||+||++++++.+||+|||+++......
T Consensus        87 e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~  163 (279)
T 1qpc_A           87 EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE  163 (279)
T ss_dssp             ECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSC
T ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHhhEEEcCCCCEEECCCcccccccCcc
Confidence            9999999999997532236899999999999999999999   7899999999999999999999999999998765432


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      .. ......||+.|+|||++.+..++.++|||||||++|||++ |+.||.+.... +...... ....  .    ...  
T Consensus       164 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~-~~~~~~~-~~~~--~----~~~--  232 (279)
T 1qpc_A          164 YT-AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNP-EVIQNLE-RGYR--M----VRP--  232 (279)
T ss_dssp             EE-CCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHH-HHHHHHH-TTCC--C----CCC--
T ss_pred             cc-cccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHH-HHHHHHh-cccC--C----CCc--
Confidence            11 1234567889999999988889999999999999999999 99999754332 2211111 1000  0    000  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                          ...+.++.+++.+||+.||++|||+.|+++.|+++
T Consensus       233 ----~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~  267 (279)
T 1qpc_A          233 ----DNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDF  267 (279)
T ss_dssp             ----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             ----ccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHH
Confidence                12234678999999999999999999999999864

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=2e-42  Score=372.83  Aligned_cols=260  Identities=18%  Similarity=0.214  Sum_probs=208.1

Q ss_pred             HHHhcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA  626 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~  626 (833)
                      ..+.|...+.||+|+||.||+|+..      +++.||||++....   .......|.+|++++++++||||+++++++..
T Consensus        23 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~   99 (322)
T 1p4o_A           23 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA---SMRERIEFLNEASVMKEFNCHHVVRLLGVVSQ   99 (322)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS---CHHHHHHHHHHHHHGGGCCCTTBCCEEEEECS
T ss_pred             hhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEeccccc---CHHHHHHHHHHHHHHHhcCCCCEeeeEEEEcc
Confidence            3457888899999999999999864      47889999995221   11234579999999999999999999999999


Q ss_pred             CCceEEEEeeCCCCChhhhhhcCC--------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC
Q 003296          627 SDSAYLFYEYAPKGTLFDVLHGCL--------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE  698 (833)
Q Consensus       627 ~~~~~lv~ey~~~g~L~~~l~~~~--------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~  698 (833)
                      .+..++||||+++|+|.++++...        ...+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.
T Consensus       100 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~NIli~~~~~  176 (322)
T 1p4o_A          100 GQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFT  176 (322)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCSGGGEEECTTCC
T ss_pred             CCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCCccCCCccceEEEcCCCe
Confidence            999999999999999999997421        135799999999999999999999   779999999999999999999


Q ss_pred             ceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhc
Q 003296          699 PQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSA  777 (833)
Q Consensus       699 ~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~  777 (833)
                      +||+|||+++...............||+.|+|||++.+..++.++|||||||++|||+| |+.||.+... .+...... 
T Consensus       177 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~-~~~~~~~~-  254 (322)
T 1p4o_A          177 VKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSN-EQVLRFVM-  254 (322)
T ss_dssp             EEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCH-HHHHHHHH-
T ss_pred             EEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCH-HHHHHHHH-
Confidence            99999999986543322222234567899999999988889999999999999999999 8899975432 22211111 


Q ss_pred             ccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          778 QQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ..... .     ..      ...+.++.+++.+||+.||++|||+.|++++|+++
T Consensus       255 ~~~~~-~-----~~------~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~  297 (322)
T 1p4o_A          255 EGGLL-D-----KP------DNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEE  297 (322)
T ss_dssp             TTCCC-C-----CC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGG
T ss_pred             cCCcC-C-----CC------CCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHh
Confidence            11100 0     00      12234678999999999999999999999999875

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=3.4e-42  Score=363.94  Aligned_cols=249  Identities=22%  Similarity=0.321  Sum_probs=206.4

Q ss_pred             HHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec----
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA----  626 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~----  626 (833)
                      ....+|+..+.||+|+||.||+|... +|+.||||++...        .+.+.+|++++++++||||+++++++..    
T Consensus         8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--------~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   79 (284)
T 2a19_B            8 RFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYN--------NEKAEREVKALAKLDHVNIVHYNGCWDGFDYD   79 (284)
T ss_dssp             HHHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECC--------SGGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC
T ss_pred             hhccccceeeeeccCCceEEEEEEEcCCCeEEEEEEeccc--------cHHHHHHHHHHHhCCCCCEEEEeeeEeccccC
Confidence            45678999999999999999999975 8999999999422        2467899999999999999999999864    


Q ss_pred             ------------CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC
Q 003296          627 ------------SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK  694 (833)
Q Consensus       627 ------------~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~  694 (833)
                                  ....++||||+++|+|.+++.......+++..+..++.|++.||.|||   +.+|+||||||+||+++
T Consensus        80 ~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~  156 (284)
T 2a19_B           80 PETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIH---SKKLINRDLKPSNIFLV  156 (284)
T ss_dssp             ---------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEE
T ss_pred             cccccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCCHHHEEEc
Confidence                        345899999999999999998654457999999999999999999999   77999999999999999


Q ss_pred             CCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHH
Q 003296          695 SLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLR  774 (833)
Q Consensus       695 ~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~  774 (833)
                      +++.+||+|||+++.......   .....||+.|+|||++.+..++.++|||||||++|||++|..|+.....   +...
T Consensus       157 ~~~~~kl~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~---~~~~  230 (284)
T 2a19_B          157 DTKQVKIGDFGLVTSLKNDGK---RTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSK---FFTD  230 (284)
T ss_dssp             ETTEEEECCCTTCEESSCCSC---CCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHHH---HHHH
T ss_pred             CCCCEEECcchhheecccccc---ccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHHH---HHHH
Confidence            999999999999987754332   2346799999999999988899999999999999999999999853211   1111


Q ss_pred             hhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296          775 NSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR  833 (833)
Q Consensus       775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r  833 (833)
                      . .. ..        +..      ..+.++.+++.+||+.||++|||+.|++++|+.++
T Consensus       231 ~-~~-~~--------~~~------~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~  273 (284)
T 2a19_B          231 L-RD-GI--------ISD------IFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK  273 (284)
T ss_dssp             H-HT-TC--------CCT------TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHT
T ss_pred             h-hc-cc--------ccc------cCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHh
Confidence            0 00 00        110      11235678999999999999999999999998753

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=1.7e-42  Score=367.19  Aligned_cols=256  Identities=16%  Similarity=0.237  Sum_probs=209.8

Q ss_pred             HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      ..+|+..+.||+|+||.||+|... ++..||||++....     ...+.|.+|++++++++||||+++++++..++..++
T Consensus        12 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   86 (288)
T 3kfa_A           12 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-----MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYI   86 (288)
T ss_dssp             GGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-----THHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEE
T ss_pred             ccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-----HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEE
Confidence            346778899999999999999975 68999999994221     235679999999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||||+++|+|.+++.......+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++....
T Consensus        87 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~  163 (288)
T 3kfa_A           87 ITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG  163 (288)
T ss_dssp             EEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHH---HHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCS
T ss_pred             EEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHH---HCCccCCCCCcceEEEcCCCCEEEccCccceeccC
Confidence            999999999999998765667999999999999999999999   77899999999999999999999999999987643


Q ss_pred             CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      ... .......||+.|+|||++.+..++.++|||||||++|||++ |+.||....... ........ .      .....
T Consensus       164 ~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~-~~~~~~~~-~------~~~~~  234 (288)
T 3kfa_A          164 DTY-TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ-VYELLEKD-Y------RMERP  234 (288)
T ss_dssp             SSS-EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG-HHHHHHTT-C------CCCCC
T ss_pred             Ccc-ccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH-HHHHHhcc-C------CCCCC
Confidence            322 12234567889999999988889999999999999999999 999997543221 11111100 0      00000


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                            ...+.++.+++.+||+.||++|||+.|+++.|+++
T Consensus       235 ------~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~  269 (288)
T 3kfa_A          235 ------EGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM  269 (288)
T ss_dssp             ------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             ------CCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHH
Confidence                  12235688999999999999999999999999864

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=6.2e-42  Score=366.90  Aligned_cols=260  Identities=18%  Similarity=0.284  Sum_probs=197.1

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      .+|+..+.||+|+||.||+|.. .+|+.||||++... ........+.+.+|++++++++||||+++++++..++..++|
T Consensus        32 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv  110 (310)
T 2wqm_A           32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIF-DLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV  110 (310)
T ss_dssp             GGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTT-SSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehh-hccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence            4688899999999999999996 58999999999422 111223356799999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcC--CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          634 YEYAPKGTLFDVLHGC--LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      |||+++|+|.+++...  ....+++..+..++.|+++||+|||   +.+|+||||||+||+++.++.+||+|||+++...
T Consensus       111 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~  187 (310)
T 2wqm_A          111 LELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFS  187 (310)
T ss_dssp             EECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCC-------
T ss_pred             EecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCcHHHEEEcCCCCEEEEeccceeeec
Confidence            9999999999998642  2346899999999999999999999   7899999999999999999999999999998764


Q ss_pred             CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc-HHHHHHHhhcccccccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE-LAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                      ....  ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+... ......... ... ....     
T Consensus       188 ~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~-~~~-~~~~-----  258 (310)
T 2wqm_A          188 SKTT--AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIE-QCD-YPPL-----  258 (310)
T ss_dssp             -------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHH-TTC-SCCC-----
T ss_pred             CCCc--cccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhh-ccc-CCCC-----
Confidence            3321  22346799999999999988999999999999999999999999975432 222221111 101 0000     


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .     ....+.++.+++.+||+.||++|||++||+++|+++
T Consensus       259 ~-----~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l  295 (310)
T 2wqm_A          259 P-----SDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRM  295 (310)
T ss_dssp             C-----TTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             c-----ccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence            0     012234678999999999999999999999999876

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=6e-42  Score=390.78  Aligned_cols=254  Identities=20%  Similarity=0.237  Sum_probs=201.9

Q ss_pred             HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~  631 (833)
                      ..+.|+..+.||+|+||+||+|+.. +|..||||++....  ........+.+|++++++++|||||+++++|...+..|
T Consensus        35 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~  112 (494)
T 3lij_A           35 LSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTS--VSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYY  112 (494)
T ss_dssp             HHHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-------CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             hhcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccc--cCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEE
Confidence            4567999999999999999999974 78999999995322  12234578999999999999999999999999999999


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC---CCceeccceeee
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL---KEPQIGDIELCK  708 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~---~~~ki~dfgl~~  708 (833)
                      +|||||++|+|.+++..  ...+++..+..++.|+++||+|||   +.+|+||||||+|||++..   +.+||+|||+++
T Consensus       113 lv~e~~~~g~L~~~~~~--~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~  187 (494)
T 3lij_A          113 LVMECYKGGELFDEIIH--RMKFNEVDAAVIIKQVLSGVTYLH---KHNIVHRDLKPENLLLESKEKDALIKIVDFGLSA  187 (494)
T ss_dssp             EEEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTCE
T ss_pred             EEEecCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChhhEEEeCCCCCCcEEEEECCCCe
Confidence            99999999999998875  346899999999999999999999   7899999999999999764   559999999998


Q ss_pred             eeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          709 VIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       709 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ......   .....+||+.|+|||++. ..|+.++||||+||++|||++|+.||.+..... ............      
T Consensus       188 ~~~~~~---~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~i~~~~~~~------  256 (494)
T 3lij_A          188 VFENQK---KMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQE-ILRKVEKGKYTF------  256 (494)
T ss_dssp             ECBTTB---CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHTCCCC------
T ss_pred             ECCCCc---cccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHhCCCCC------
Confidence            775432   234578999999999876 569999999999999999999999997654322 221111110100      


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                          ....+...+.++.+++.+||+.||++|||+.|+++|
T Consensus       257 ----~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h  292 (494)
T 3lij_A          257 ----DSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALEH  292 (494)
T ss_dssp             ----CSGGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred             ----CchhcccCCHHHHHHHHHHCCCChhhCccHHHHhcC
Confidence                111112334578899999999999999999999865

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.2e-40  Score=377.05  Aligned_cols=348  Identities=20%  Similarity=0.241  Sum_probs=310.8

Q ss_pred             CCCCEEECCCCCCCCc-c-cccCCCCCCEEECCCCCCC-CcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEE
Q 003296            8 DGLKLLNFSKNELVSL-P-TFNGFAGLEVLDFSSNNLN-GNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELV   84 (833)
Q Consensus         8 ~~L~~L~ls~N~l~~i-~-~f~~l~~L~~L~Ls~N~l~-~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~   84 (833)
                      ++|++|+|++|.++++ | .|..+++|++|+|++|.+. .+.+..|.++++|++|+|++|++++..|..|+++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            6799999999999997 4 5999999999999999997 45577899999999999999999999999999999999999


Q ss_pred             ccCCcCcccCCcc--ccCCCCCCEEeccCCcCCccCCcc-ccCCCCCcEEECcCCcCCCCCCcccccC--CccCcccccc
Q 003296           85 LSGNAFHGEIPKG--IADYRNLTLIDLSANNLSGSVPDR-IGELSKLEVLILSANNLDGRLPTSLASI--TTLSRFAANQ  159 (833)
Q Consensus        85 L~~N~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~l~l~~  159 (833)
                      |++|.+++..|..  |..+++|++|+|++|++++..|.. |.++++|++|+|++|.+++..|..+..+  .+|+.+++++
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            9999999855554  999999999999999999888876 8999999999999999999999999887  7899999999


Q ss_pred             ccccccCChhh----------hhcCCEEecccccccccCCccCCCC---CCCCEEecccccCcccCC----------CCC
Q 003296          160 NKFSGSVPGGI----------TRFLRNLDLSYNKLLGVIPIDLLSH---PNLQTIDLSVNMLEGSLP----------QNM  216 (833)
Q Consensus       160 n~l~~~~p~~~----------~~~L~~L~Ls~N~l~~~~~~~~~~~---~~L~~L~Ls~N~l~~~~p----------~~~  216 (833)
                      |.+.+..+..+          ...|+.|+|++|++.+..|..+...   ++|+.|++++|.+.+...          ..+
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  269 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF  269 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence            99987554322          2569999999999998887766543   899999999997654321          111


Q ss_pred             ----CcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCC
Q 003296          217 ----SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGI  292 (833)
Q Consensus       217 ----~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  292 (833)
                          .++|+.|++++|.+.+ +++..|..+++|++|+|++|++++..|..|.++++|+.|+|++|.+.+..|..|..+++
T Consensus       270 ~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  348 (455)
T 3v47_A          270 KGLEASGVKTCDLSKSKIFA-LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK  348 (455)
T ss_dssp             GGGTTSCCCEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred             ccccccCceEEEecCccccc-cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence                1589999999999876 55667899999999999999999999999999999999999999999888999999999


Q ss_pred             CcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccC
Q 003296          293 LQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIP  356 (833)
Q Consensus       293 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p  356 (833)
                      |+.|+|++|++++..|..|..+++|++|++++|++++..+..|..+++|+.|+|++|++++..|
T Consensus       349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            9999999999999999999999999999999999998888888999999999999999998776

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=5.7e-42  Score=375.23  Aligned_cols=260  Identities=19%  Similarity=0.206  Sum_probs=197.1

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC-----
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD-----  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~-----  628 (833)
                      +.|...+.||+|+||.||+|.. .+|+.||||++....  ......+++.+|++++++++|||||++++++...+     
T Consensus        25 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~  102 (367)
T 1cm8_A           25 AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPF--QSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF  102 (367)
T ss_dssp             SSEEEEEEC------CEEEEEETTTCCEEEEEECSSTT--SSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred             ceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccc--cCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccC
Confidence            4577889999999999999997 579999999994321  11223467899999999999999999999998763     


Q ss_pred             -ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          629 -SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       629 -~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                       ..|+||||+ +++|.++++.   ..+++..+..++.|+++||+|||   +.+|+||||||+||+++.++.+||+|||++
T Consensus       103 ~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a  175 (367)
T 1cm8_A          103 TDFYLVMPFM-GTDLGKLMKH---EKLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLA  175 (367)
T ss_dssp             CCCEEEEECC-SEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             ceEEEEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCHHHEEEcCCCCEEEEeeecc
Confidence             469999999 8899999985   35899999999999999999999   789999999999999999999999999999


Q ss_pred             eeeCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc
Q 003296          708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL  786 (833)
Q Consensus       708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  786 (833)
                      +.....     ....+||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+......+.......+....+..
T Consensus       176 ~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~  250 (367)
T 1cm8_A          176 RQADSE-----MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFV  250 (367)
T ss_dssp             EECCSS-----CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHH
T ss_pred             cccccc-----cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHH
Confidence            876432     245689999999999876 67999999999999999999999999866544333221111111000000


Q ss_pred             cc--------------ccc--CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          787 DF--------------NVS--RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       787 ~~--------------~~~--~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ..              ...  ...........++.+++.+||+.||++|||++|+++|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~h  308 (367)
T 1cm8_A          251 QRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAH  308 (367)
T ss_dssp             HTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcC
Confidence            00              000  0000011224578899999999999999999999985

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=1.6e-42  Score=375.44  Aligned_cols=260  Identities=19%  Similarity=0.256  Sum_probs=206.8

Q ss_pred             HHhcCCccccccCcccEEEEEEcC-CC-----ceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEec
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP-SG-----MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLA  626 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~-----~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~  626 (833)
                      .++|...+.||+|+||.||+|... +|     ..||||++.....   ....+.+.+|+++++++ +|||||+++++|..
T Consensus        45 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~  121 (333)
T 2i1m_A           45 RNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAH---ADEKEALMSELKIMSHLGQHENIVNLLGACTH  121 (333)
T ss_dssp             TTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCC---HHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             HHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccC---hHHHHHHHHHHHHHHhhcCCCCeeeEEEEEec
Confidence            356778899999999999999963 33     4799999953221   12346799999999999 89999999999999


Q ss_pred             CCceEEEEeeCCCCChhhhhhcCC------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC
Q 003296          627 SDSAYLFYEYAPKGTLFDVLHGCL------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK  694 (833)
Q Consensus       627 ~~~~~lv~ey~~~g~L~~~l~~~~------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~  694 (833)
                      ++..++||||+++|+|.+++....            ...+++..+..++.|++.||+|||   +.+|+||||||+||+++
T Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~  198 (333)
T 2i1m_A          122 GGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLA---SKNCIHRDVAARNVLLT  198 (333)
T ss_dssp             SSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGCEEE
T ss_pred             CCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCcccceEEEC
Confidence            999999999999999999997431            235799999999999999999999   77999999999999999


Q ss_pred             CCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHH
Q 003296          695 SLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVL  773 (833)
Q Consensus       695 ~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~  773 (833)
                      .++.+||+|||+++...............||+.|+|||++.+..++.++|||||||++|||+| |+.||.+.........
T Consensus       199 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~  278 (333)
T 2i1m_A          199 NGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYK  278 (333)
T ss_dssp             GGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHHHHH
T ss_pred             CCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHHHHH
Confidence            999999999999986643332222234567889999999988889999999999999999999 9999975433222111


Q ss_pred             HhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          774 RNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      . ......      .....      ..+.++.+++.+||+.||++|||+.||+++|+++
T Consensus       279 ~-~~~~~~------~~~~~------~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~  324 (333)
T 2i1m_A          279 L-VKDGYQ------MAQPA------FAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQ  324 (333)
T ss_dssp             H-HHHTCC------CCCCT------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             H-HhcCCC------CCCCC------CCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHH
Confidence            1 111000      00000      1234678999999999999999999999999875

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=2.1e-42  Score=375.03  Aligned_cols=259  Identities=19%  Similarity=0.261  Sum_probs=194.9

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHH--HhcCCCCCcccceEEEec-----C
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEV--LGKLSNSNVMTPLAYVLA-----S  627 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~--l~~l~H~niv~~~~~~~~-----~  627 (833)
                      ++|+..+.||+|+||.||+|+. +|+.||||++...       ....+..|.++  +..++||||+++++++..     .
T Consensus        13 ~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~-------~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~   84 (336)
T 3g2f_A           13 DNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFA-------NRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGR   84 (336)
T ss_dssp             TSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGG-------GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSC
T ss_pred             HHhheeeecccCCCeEEEEEEE-CCeEEEEEEeecc-------chhhHHHHHHHHHHHhccCcchhhheecccccccCCC
Confidence            3577789999999999999977 7899999999422       12445555555  556899999999986543     2


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCC---------CeeecCCCccceeeCCCCC
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSN---------PILLLDLSTRNIFLKSLKE  698 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~---------~iiHrdlk~~Nill~~~~~  698 (833)
                      ...++|||||++|+|.+++...   ..+|..+..++.|+++||+|||   +.         +|+||||||+|||++.++.
T Consensus        85 ~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~qi~~~L~~LH---~~~~~~~~~~~~ivH~Dikp~Nill~~~~~  158 (336)
T 3g2f_A           85 MEYLLVMEYYPNGSLXKYLSLH---TSDWVSSCRLAHSVTRGLAYLH---TELPRGDHYKPAISHRDLNSRNVLVKNDGT  158 (336)
T ss_dssp             EEEEEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHH---CCBCCGGGCBCCEECSSCSGGGEEECTTSC
T ss_pred             ceEEEEEecCCCCcHHHHHhhc---ccchhHHHHHHHHHHHHHHHHH---hhhccccccccceeecccccceEEEcCCCc
Confidence            3578999999999999999753   4589999999999999999999   55         9999999999999999999


Q ss_pred             ceeccceeeeeeCCCCC------CCccccccccccccccccccC-------CcccccCcchhhHHHHHHHHhCCCcccCC
Q 003296          699 PQIGDIELCKVIDPSKS------TGSLSTVAGSVGYIPPEYAYT-------MRVTMAGNVYSFGVILLELLTGKTAVNQG  765 (833)
Q Consensus       699 ~ki~dfgl~~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~S~Gvvl~elltg~~p~~~~  765 (833)
                      +||+|||+++.......      .......+||+.|+|||++.+       ..++.++|||||||++|||++|+.||...
T Consensus       159 ~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~  238 (336)
T 3g2f_A          159 CVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPG  238 (336)
T ss_dssp             EEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTT
T ss_pred             EEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCc
Confidence            99999999987653221      112234679999999999876       46788999999999999999998887533


Q ss_pred             ccHHH----------------HHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Q 003296          766 NELAK----------------WVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML  829 (833)
Q Consensus       766 ~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L  829 (833)
                      .....                ........     ....+.++.........+.++.+++.+||+.||++|||++|+++.|
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L  313 (336)
T 3g2f_A          239 ESVPEYQMAFQTEVGNHPTFEDMQVLVSR-----EKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERM  313 (336)
T ss_dssp             SCCCCCCCTTHHHHCSSCCHHHHHHHHTT-----SCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHH
T ss_pred             cchhHHHHhhhcccCCCchHHHHHhhhcc-----cccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHH
Confidence            22110                00000000     0001111111111223566789999999999999999999999999


Q ss_pred             Hhc
Q 003296          830 LNA  832 (833)
Q Consensus       830 ~~~  832 (833)
                      +++
T Consensus       314 ~~l  316 (336)
T 3g2f_A          314 AEL  316 (336)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=1.2e-41  Score=373.33  Aligned_cols=249  Identities=12%  Similarity=0.081  Sum_probs=202.0

Q ss_pred             HHhcCCccccccCcccEEEEEE------cCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC---CCCcccceEEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAV------MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS---NSNVMTPLAYV  624 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~------~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~---H~niv~~~~~~  624 (833)
                      .+.|...+.||+|+||.||+|+      ..+++.||||++...       ...+|.+|++++++++   |+|||++++++
T Consensus        64 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-------~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~  136 (365)
T 3e7e_A           64 SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA-------NPWEFYIGTQLMERLKPSMQHMFMKFYSAH  136 (365)
T ss_dssp             SSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC-------CHHHHHHHHHHHHHSCGGGGGGBCCEEEEE
T ss_pred             CEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC-------ChhHHHHHHHHHHHhhhhhhhhhhhhheee
Confidence            3567788999999999999994      357899999999422       3467889999999887   99999999999


Q ss_pred             ecCCceEEEEeeCCCCChhhhhhcC---CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC------
Q 003296          625 LASDSAYLFYEYAPKGTLFDVLHGC---LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS------  695 (833)
Q Consensus       625 ~~~~~~~lv~ey~~~g~L~~~l~~~---~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~------  695 (833)
                      ..++..|+|||||++|+|.++++..   ....++|.+++.|+.|+++||+|||   +.+||||||||+|||++.      
T Consensus       137 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH---~~~ivHrDiKp~NIll~~~~~~~~  213 (365)
T 3e7e_A          137 LFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH---DCEIIHGDIKPDNFILGNGFLEQD  213 (365)
T ss_dssp             ECSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECGGGTCC-
T ss_pred             ecCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCCHHHEEecccccCcc
Confidence            9999999999999999999999742   2456999999999999999999999   789999999999999998      


Q ss_pred             -----CCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHH
Q 003296          696 -----LKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAK  770 (833)
Q Consensus       696 -----~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~  770 (833)
                           ++.+||+|||+|+..............+||++|||||++.+..|+.++|||||||++|||+||+.||......  
T Consensus       214 ~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~--  291 (365)
T 3e7e_A          214 DEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGG--  291 (365)
T ss_dssp             -----CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETT--
T ss_pred             ccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCC--
Confidence                 8999999999998764333233345678999999999999999999999999999999999999999632210  


Q ss_pred             HHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCC-CCHHHHHHHHHh
Q 003296          771 WVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEAR-PKMKSVLRMLLN  831 (833)
Q Consensus       771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~R-ps~~evl~~L~~  831 (833)
                              ....    ........     ....+.+++.+|++.+|.+| |+++++.+.|++
T Consensus       292 --------~~~~----~~~~~~~~-----~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~  336 (365)
T 3e7e_A          292 --------ECKP----EGLFRRLP-----HLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKK  336 (365)
T ss_dssp             --------EEEE----CSCCTTCS-----SHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHH
T ss_pred             --------ceee----chhccccC-----cHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHH
Confidence                    0011    11111111     12355678889999999999 678888777765

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=2.5e-42  Score=375.49  Aligned_cols=267  Identities=13%  Similarity=0.089  Sum_probs=200.1

Q ss_pred             HhcCCccccccCcccEEEEEEcC----CCceEEEEEccccchh-------hhccChhHHHHHHHHHhcCCCCCcccceEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP----SGMSYFIKKLNWSDKI-------FQLGSHHKFDKELEVLGKLSNSNVMTPLAY  623 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~----~~~~vavK~~~~~~~~-------~~~~~~~~~~~E~~~l~~l~H~niv~~~~~  623 (833)
                      +.|...+.||+|+||.||+|...    ++..||||+.......       ......+.+.+|+.+++.++||||++++++
T Consensus        37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~  116 (345)
T 2v62_A           37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS  116 (345)
T ss_dssp             CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred             ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence            46788899999999999999975    6789999998533211       111234568899999999999999999999


Q ss_pred             Eec----CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC--
Q 003296          624 VLA----SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK--  697 (833)
Q Consensus       624 ~~~----~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~--  697 (833)
                      +..    .+..|+||||+ +|+|.+++...  ..+++.+++.++.|++.||+|||   +.+|+||||||+||+++.++  
T Consensus       117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~  190 (345)
T 2v62_A          117 GLTEFKGRSYRFMVMERL-GIDLQKISGQN--GTFKKSTVLQLGIRMLDVLEYIH---ENEYVHGDIKAANLLLGYKNPD  190 (345)
T ss_dssp             EEEESSSCEEEEEEEECE-EEEHHHHCBGG--GBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEESSSTT
T ss_pred             cccccCCCcEEEEEEecc-CCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCcCHHHEEEccCCCC
Confidence            988    67899999999 99999999863  37999999999999999999999   77999999999999999877  


Q ss_pred             CceeccceeeeeeCCCCCC-----CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHH
Q 003296          698 EPQIGDIELCKVIDPSKST-----GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWV  772 (833)
Q Consensus       698 ~~ki~dfgl~~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~  772 (833)
                      .+||+|||+++........     .......||+.|+|||++.+..++.++|||||||++|||+||+.||.+........
T Consensus       191 ~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~  270 (345)
T 2v62_A          191 QVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAV  270 (345)
T ss_dssp             SEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHH
T ss_pred             cEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHH
Confidence            9999999999876432211     11245689999999999998889999999999999999999999996422111111


Q ss_pred             HH-hhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          773 LR-NSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       773 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .. ...........+.....     ....+.++.+++.+||+.||++|||++||++.|+++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~  326 (345)
T 2v62_A          271 QTAKTNLLDELPQSVLKWAP-----SGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPH  326 (345)
T ss_dssp             HHHHHHHHHTTTHHHHHHSC-----TTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTT
T ss_pred             HHHHHhhcccccHHHHhhcc-----ccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhcc
Confidence            11 00000000000000000     002344788999999999999999999999999875

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=1.3e-41  Score=373.60  Aligned_cols=261  Identities=17%  Similarity=0.148  Sum_probs=196.3

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC-----
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD-----  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~-----  628 (833)
                      +.|+..+.||+|+||.||+|.. .+|+.||||++....  ......+.+.+|++++++++|||||++++++...+     
T Consensus        25 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~  102 (371)
T 2xrw_A           25 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPF--QNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF  102 (371)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTT--SSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTC
T ss_pred             hheeEeeeeEecCCEEEEEEEECCCCceEEEEEecccc--CChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccc
Confidence            4678889999999999999996 479999999995321  11223467899999999999999999999998765     


Q ss_pred             -ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          629 -SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       629 -~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                       ..|+|||||++ +|.+++..    .+++.++..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||++
T Consensus       103 ~~~~lv~e~~~~-~l~~~~~~----~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a  174 (371)
T 2xrw_A          103 QDVYIVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLA  174 (371)
T ss_dssp             CEEEEEEECCSE-EHHHHHHS----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCCCC-
T ss_pred             cceEEEEEcCCC-CHHHHHhh----ccCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEEEeecc
Confidence             68999999974 88888863    4899999999999999999999   789999999999999999999999999999


Q ss_pred             eeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccc--
Q 003296          708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHI--  785 (833)
Q Consensus       708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~--  785 (833)
                      +......   .....+||+.|+|||++.+..++.++||||+||++|||++|+.||.+......+............+.  
T Consensus       175 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~  251 (371)
T 2xrw_A          175 RTAGTSF---MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMK  251 (371)
T ss_dssp             ------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHC-CCCCCHHHHT
T ss_pred             ccccccc---ccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHH
Confidence            8764322   22456899999999999998999999999999999999999999987665544433221111000000  


Q ss_pred             ------------------------cc-ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          786 ------------------------LD-FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       786 ------------------------~~-~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                                              .. ...+...........++.+++.+||+.||++|||++|+++|
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  319 (371)
T 2xrw_A          252 KLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH  319 (371)
T ss_dssp             TSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             HhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCC
Confidence                                    00 00011111223346788999999999999999999999985

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=1.3e-41  Score=399.84  Aligned_cols=252  Identities=21%  Similarity=0.211  Sum_probs=208.3

Q ss_pred             HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~  631 (833)
                      .++|+..++||+|+||.||+|+.. +|+.||||+++ +.........+.+.+|.+++..+ +||+|+++++++.+.+..|
T Consensus       340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~-~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~  418 (674)
T 3pfq_A          340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILK-KDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY  418 (674)
T ss_dssp             CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEE-HHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred             ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEe-ccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence            356888899999999999999974 78999999994 32333345567899999999998 7999999999999999999


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      +||||+++|+|.++++.  ...+++.++..|+.|++.||+|||   +.+||||||||+|||++.++.+||+|||+|+...
T Consensus       419 lV~E~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH---~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~  493 (674)
T 3pfq_A          419 FVMEYVNGGDLMYHIQQ--VGRFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENI  493 (674)
T ss_dssp             EEEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTSEECCCCCSTTEEECSSSCEEECCCTTCEECC
T ss_pred             EEEeCcCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCeEeccCChhhEEEcCCCcEEEeecceeeccc
Confidence            99999999999999986  346999999999999999999999   7899999999999999999999999999998653


Q ss_pred             CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      ....  ...+.+||+.|||||++.+..|+.++|||||||++|||++|+.||.+..... ...........        ++
T Consensus       494 ~~~~--~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~~-~~~~i~~~~~~--------~p  562 (674)
T 3pfq_A          494 WDGV--TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDE-LFQSIMEHNVA--------YP  562 (674)
T ss_dssp             CTTC--CBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHSSCCC--------CC
T ss_pred             cCCc--ccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHHH-HHHHHHhCCCC--------CC
Confidence            3322  2356789999999999999999999999999999999999999998654322 22221111110        11


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCCH-----HHHHHH
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKM-----KSVLRM  828 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~-----~evl~~  828 (833)
                            ...+.++.+++.+||+.||++||++     +||++|
T Consensus       563 ------~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~h  598 (674)
T 3pfq_A          563 ------KSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEH  598 (674)
T ss_dssp             ------TTSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHSS
T ss_pred             ------ccCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhcC
Confidence                  1234578899999999999999998     777654

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=1e-41  Score=365.76  Aligned_cols=260  Identities=17%  Similarity=0.203  Sum_probs=195.9

Q ss_pred             HHhcCCccccccCcccEEEEEEcC----CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC-
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP----SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD-  628 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~-  628 (833)
                      .+.|...+.||+|+||.||+|...    ++..||||++.....  .....+.|.+|++++++++|||||++++++...+ 
T Consensus        33 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  110 (313)
T 3brb_A           33 RNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNS--SQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSS  110 (313)
T ss_dssp             GGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CC--CHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC---
T ss_pred             HHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEecccc--chhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccc
Confidence            456788899999999999999863    456899999952211  1123467999999999999999999999998765 


Q ss_pred             ----ceEEEEeeCCCCChhhhhhcC----CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCce
Q 003296          629 ----SAYLFYEYAPKGTLFDVLHGC----LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQ  700 (833)
Q Consensus       629 ----~~~lv~ey~~~g~L~~~l~~~----~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~k  700 (833)
                          ..++||||+++|+|.+++...    ....+++.+++.++.|+++||.|||   +.+|+||||||+||+++.++.+|
T Consensus       111 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~k  187 (313)
T 3brb_A          111 QGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLS---NRNFLHRDLAARNCMLRDDMTVC  187 (313)
T ss_dssp             ----CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCSGGGEEECTTSCEE
T ss_pred             cCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEE
Confidence                359999999999999998532    2346999999999999999999999   78999999999999999999999


Q ss_pred             eccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccc
Q 003296          701 IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQ  779 (833)
Q Consensus       701 i~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~  779 (833)
                      |+|||+++...............|++.|+|||++.+..++.++|||||||++|||++ |+.||........+.. .... 
T Consensus       188 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~-~~~~-  265 (313)
T 3brb_A          188 VADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDY-LLHG-  265 (313)
T ss_dssp             ECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHH-HHTT-
T ss_pred             EeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHH-HHcC-
Confidence            999999987644332222234568899999999998899999999999999999999 8899975443221111 1110 


Q ss_pred             ccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          780 DKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ...      ...      ...+.++.+++.+||+.||++|||+.|++++|+++
T Consensus       266 ~~~------~~~------~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l  306 (313)
T 3brb_A          266 HRL------KQP------EDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKL  306 (313)
T ss_dssp             CCC------CCB------TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CCC------CCC------ccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            000      000      12234688999999999999999999999999875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.2e-40  Score=384.90  Aligned_cols=405  Identities=22%  Similarity=0.218  Sum_probs=306.5

Q ss_pred             CCCCEEECCCCCCCCcc--cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296            8 DGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL   85 (833)
Q Consensus         8 ~~L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   85 (833)
                      ++|+.|++++|.+++++  .|.++++|++|+|++|+|+++.+.+|.++++|++|+|++|+|+.+++ .  .+++|++|+|
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC-C--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECS-C--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCc-c--ccccCCEEEC
Confidence            68999999999999985  69999999999999999999999999999999999999999996544 4  8999999999


Q ss_pred             cCCcCccc-CCccccCCCCCCEEeccCCcCCccCCccccCCCCC--cEEECcCCcC--CCCCCcccccCC--ccCccccc
Q 003296           86 SGNAFHGE-IPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKL--EVLILSANNL--DGRLPTSLASIT--TLSRFAAN  158 (833)
Q Consensus        86 ~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--~~L~Ls~N~l--~~~~p~~~~~l~--~L~~l~l~  158 (833)
                      ++|++++. .|..|+++++|++|+|++|++++.   .|..+++|  ++|+|++|.+  ++..|..+..+.  .+ .++++
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~  204 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFH  204 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEEC
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEec
Confidence            99999974 468999999999999999999863   56666666  9999999999  888888888765  22 33555


Q ss_pred             cccccccCChhh---hhcCCEEecccc----------------------------cccc-----cCCccCCCCCCCCEEe
Q 003296          159 QNKFSGSVPGGI---TRFLRNLDLSYN----------------------------KLLG-----VIPIDLLSHPNLQTID  202 (833)
Q Consensus       159 ~n~l~~~~p~~~---~~~L~~L~Ls~N----------------------------~l~~-----~~~~~~~~~~~L~~L~  202 (833)
                      .|.+.+.++...   ...|+.|++++|                            .+.+     ..+ . ...++|++|+
T Consensus       205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~-~-~~~~~L~~L~  282 (562)
T 3a79_B          205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ-F-FWPRPVEYLN  282 (562)
T ss_dssp             SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH-H-HTTSSEEEEE
T ss_pred             CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH-h-hhcccccEEE
Confidence            555554443321   233455555544                            2221     111 1 1234899999


Q ss_pred             cccccCcccCCCCCC----cCCcEEEcCCccccC-CCCccccCC---CCCCCEEECCCCCCCCCCCccccCCCCCcEEEc
Q 003296          203 LSVNMLEGSLPQNMS----PNLVRLRLGTNLLIG-EIPSATFTS---LEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNL  274 (833)
Q Consensus       203 Ls~N~l~~~~p~~~~----~~L~~L~l~~n~l~~-~~~~~~f~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  274 (833)
                      +++|.++|.+|..+.    .+++.|.+.++.... .+|...+..   ..+|++|++++|.+....  ....+++|++|++
T Consensus       283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l  360 (562)
T 3a79_B          283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNF  360 (562)
T ss_dssp             EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEEC
T ss_pred             EeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEEC
Confidence            999999888887652    455555444332211 233222222   256888999988876432  1267888999999


Q ss_pred             cCCccCCCChhhhCCCCCCcEEEccCCcCCCc--CchhhcCCCcCceeeccCCcCcccCc-cccccCCCCCEEEccCCcc
Q 003296          275 AQNELNGSLPIQLGSLGILQVMNLQLNKLSGE--IPSQFSQLKLLSTMNISWNSLSGSIP-SFLSNLTNLVNLNLRQNNL  351 (833)
Q Consensus       275 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l  351 (833)
                      ++|.+++..|..+..+++|+.|++++|++++.  .|..|..+++|++|++++|.+++.+| ..+..+++|+.|+|++|++
T Consensus       361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l  440 (562)
T 3a79_B          361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML  440 (562)
T ss_dssp             CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred             CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence            99998888888888888999999999988874  35668888899999999999887444 4578888999999999998


Q ss_pred             ccccCccccCCCCCCEEEccCCcCCccCCCCccccc--ceeeccccccccchhhhhccCCCCCEEecccCcCccccc
Q 003296          352 NGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQ--IALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIP  426 (833)
Q Consensus       352 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~--~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  426 (833)
                      ++..|..+.  ++|+.|+|++|+++ .+|.....+.  +.|++++|++++..+..|..+++|+.|++++|.+.+..|
T Consensus       441 ~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          441 TGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             Ccchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            877666554  68889999999887 4444333332  678899999985444449999999999999999987655

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=9.5e-42  Score=361.15  Aligned_cols=254  Identities=17%  Similarity=0.229  Sum_probs=203.3

Q ss_pred             cCCcc-ccccCcccEEEEEEcC---CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          557 ANPLN-VELKTRFSTYYKAVMP---SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       557 ~~~~~-~ig~g~~g~vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      |...+ .||+|+||.||+|+..   ++..||||+++...   .....+.+.+|++++++++||||+++++++ ..+..++
T Consensus        11 ~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~l   86 (287)
T 1u59_A           11 LLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT---EKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALML   86 (287)
T ss_dssp             EEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSC---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEE
T ss_pred             hhhhhccccccCceeEEEeEeccCCCcceEEEEecCCcc---chhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEE
Confidence            44444 8999999999999853   67889999995321   122356799999999999999999999999 4567999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||||+++|+|.+++... ...+++.++..++.|+++||+|||   +.+|+||||||+||+++.++.+||+|||+++....
T Consensus        87 v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~  162 (287)
T 1u59_A           87 VMEMAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGA  162 (287)
T ss_dssp             EEECCTTEEHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEEETTEEEECCCTTCEECTT
T ss_pred             EEEeCCCCCHHHHHHhC-CccCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCchheEEEcCCCCEEECcccceeeecc
Confidence            99999999999999753 346999999999999999999999   78999999999999999999999999999987753


Q ss_pred             CCCC-CccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296          713 SKST-GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       713 ~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                      .... .......||+.|+|||++.+..++.++|||||||++|||+| |+.||........ .... .....      ...
T Consensus       163 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~-~~~i-~~~~~------~~~  234 (287)
T 1u59_A          163 DDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEV-MAFI-EQGKR------MEC  234 (287)
T ss_dssp             CSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHH-HHHH-HTTCC------CCC
T ss_pred             CcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHH-HHHH-hcCCc------CCC
Confidence            3221 11233467899999999988889999999999999999999 9999975443221 1111 11110      001


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .      ...+.++.+++.+||+.||++||++.|++++|+++
T Consensus       235 ~------~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~  270 (287)
T 1u59_A          235 P------PECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC  270 (287)
T ss_dssp             C------TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred             C------CCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            1      12345788999999999999999999999999875

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=6.1e-42  Score=368.02  Aligned_cols=264  Identities=20%  Similarity=0.220  Sum_probs=195.3

Q ss_pred             hcCC-ccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEE
Q 003296          556 VANP-LNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       556 ~~~~-~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~l  632 (833)
                      .|.. .+.||+|+||.||+|.. .+|+.||||++...    .....+.+.+|++++.++ +|||||++++++..++..|+
T Consensus        13 ~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~l   88 (316)
T 2ac3_A           13 VYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQ----PGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYL   88 (316)
T ss_dssp             SCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECC----SSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred             eEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeC----cchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEE
Confidence            4555 37899999999999996 47999999999432    123467899999999995 79999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC---ceeccceeeee
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE---PQIGDIELCKV  709 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~---~ki~dfgl~~~  709 (833)
                      ||||+++|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.   +||+|||+++.
T Consensus        89 v~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~  163 (316)
T 2ac3_A           89 VFEKMRGGSILSHIHK--RRHFNELEASVVVQDVASALDFLH---NKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSG  163 (316)
T ss_dssp             EEECCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC-
T ss_pred             EEEcCCCCcHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEEccCCCcCceEEEEccCccc
Confidence            9999999999999986  346899999999999999999999   779999999999999998776   89999999876


Q ss_pred             eCCCCC-----CCccccccccccccccccccC-----CcccccCcchhhHHHHHHHHhCCCcccCCccHH-HHHHHhhc-
Q 003296          710 IDPSKS-----TGSLSTVAGSVGYIPPEYAYT-----MRVTMAGNVYSFGVILLELLTGKTAVNQGNELA-KWVLRNSA-  777 (833)
Q Consensus       710 ~~~~~~-----~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~-~~~~~~~~-  777 (833)
                      ......     .......+||+.|+|||++.+     ..++.++|||||||++|||++|+.||.+..... .|...... 
T Consensus       164 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~  243 (316)
T 2ac3_A          164 IKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACP  243 (316)
T ss_dssp             ------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCH
T ss_pred             cccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccch
Confidence            532211     111234579999999999864     568999999999999999999999997532210 00000000 


Q ss_pred             --ccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          778 --QQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       778 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        .......+.......+.......+.++.+++.+||+.||++|||+.|+++|
T Consensus       244 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h  296 (316)
T 2ac3_A          244 ACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQH  296 (316)
T ss_dssp             HHHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             hHHHHHHHHHhccCcccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence              000000000001111111111234578899999999999999999999985

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=3.3e-42  Score=371.97  Aligned_cols=266  Identities=17%  Similarity=0.177  Sum_probs=195.7

Q ss_pred             HHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~  631 (833)
                      ..+.|...+.||+|+||.||+|+. .+|+.||||++....  ......+.+.+|++++++++|||||++++++..++..+
T Consensus        32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  109 (329)
T 3gbz_A           32 SIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEH--EEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLH  109 (329)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC----------CHHHHHHGGGCCCTTBCCEEEEEEETTEEE
T ss_pred             chhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccc--cccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEE
Confidence            345788899999999999999996 589999999995322  12233467889999999999999999999999999999


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee-----CCCCCceecccee
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL-----KSLKEPQIGDIEL  706 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill-----~~~~~~ki~dfgl  706 (833)
                      +||||++ |+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+|||+     ++.+.+||+|||+
T Consensus       110 lv~e~~~-~~L~~~~~~--~~~~~~~~~~~i~~ql~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~  183 (329)
T 3gbz_A          110 LIFEYAE-NDLKKYMDK--NPDVSMRVIKSFLYQLINGVNFCH---SRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGL  183 (329)
T ss_dssp             EEEECCS-EEHHHHHHH--CTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEC-----CCEEEECCTTH
T ss_pred             EEEecCC-CCHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCEECCCCCHHHEEEecCCCCccceEEECcCCC
Confidence            9999998 599999986  346899999999999999999999   7899999999999999     4555699999999


Q ss_pred             eeeeCCCCCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccc--
Q 003296          707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLD--  783 (833)
Q Consensus       707 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~--  783 (833)
                      ++.......  .....+||+.|+|||++.+. .++.++|||||||++|||++|+.||.+...................  
T Consensus       184 a~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  261 (329)
T 3gbz_A          184 ARAFGIPIR--QFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTT  261 (329)
T ss_dssp             HHHHC-------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTT
T ss_pred             ccccCCccc--ccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhh
Confidence            987643221  22456789999999998864 4899999999999999999999999866544333222111000000  


Q ss_pred             --ccc--------cccccCCchh---HHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          784 --HIL--------DFNVSRTSLA---VRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       784 --~~~--------~~~~~~~~~~---~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        ...        .+........   ......++.+++.+||+.||++|||++|+++|
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  319 (329)
T 3gbz_A          262 WPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALEH  319 (329)
T ss_dssp             STTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             hhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhCC
Confidence              000        0000000000   00123578899999999999999999999875

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=1.3e-41  Score=361.49  Aligned_cols=251  Identities=18%  Similarity=0.250  Sum_probs=205.6

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ..|...+.||+|+||.||+|... +|+.||+|++... ........+.+.+|++++++++|||||++++++..++..++|
T Consensus        15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~-~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   93 (294)
T 2rku_A           15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKS-LLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV   93 (294)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGG-GCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechh-hccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence            45777899999999999999975 6889999998422 111223356789999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++..  ...+++.++..++.|+++||+|||   +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus        94 ~e~~~~~~L~~~~~~--~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~  168 (294)
T 2rku_A           94 LELCRRRSLLELHKR--RKALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD  168 (294)
T ss_dssp             EECCTTCBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCST
T ss_pred             EecCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEcCCCCEEEEeccCceecccC
Confidence            999999999999875  346899999999999999999999   779999999999999999999999999999876533


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      ..  ......||+.|+|||++.+..++.++|||||||++|||++|+.||........+.... .....        .+. 
T Consensus       169 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~-~~~~~--------~~~-  236 (294)
T 2rku_A          169 GE--RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIK-KNEYS--------IPK-  236 (294)
T ss_dssp             TC--CBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHH-TTCCC--------CCT-
T ss_pred             cc--ccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHh-hccCC--------Ccc-
Confidence            22  2244679999999999998889999999999999999999999997654332222111 11000        110 


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                           .....+.+++.+||+.||++|||++|++++
T Consensus       237 -----~~~~~~~~li~~~l~~~p~~Rps~~~ll~~  266 (294)
T 2rku_A          237 -----HINPVAASLIQKMLQTDPTARPTINELLND  266 (294)
T ss_dssp             -----TSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             -----ccCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence                 123467789999999999999999999875

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=1.6e-42  Score=374.47  Aligned_cols=266  Identities=21%  Similarity=0.245  Sum_probs=206.1

Q ss_pred             HhcCCccccccCcccEEEEEEc-----CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec--C
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA--S  627 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~--~  627 (833)
                      +.|+..+.||+|+||.||+|+.     .+|+.||||++.....    ...+.|.+|++++++++||||+++++++..  .
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   98 (327)
T 3lxl_A           23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGP----DQQRDFQREIQILKALHSDFIVKYRGVSYGPGR   98 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCH----HHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSS
T ss_pred             hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCH----HHHHHHHHHHHHHHhcCCCceeEEEEEEecCCC
Confidence            4677889999999999999983     4789999999953321    234679999999999999999999999874  4


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                      +..++||||+++|+|.+++... ...+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||++
T Consensus        99 ~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~  174 (327)
T 3lxl_A           99 QSLRLVMEYLPSGCLRDFLQRH-RARLDASRLLLYSSQICKGMEYLG---SRRCVHRDLAARNILVESEAHVKIADFGLA  174 (327)
T ss_dssp             CEEEEEEECCTTCBHHHHHHHH-GGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCGGGC
T ss_pred             ceEEEEEeecCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChhhEEECCCCCEEEcccccc
Confidence            5689999999999999999753 235899999999999999999999   789999999999999999999999999999


Q ss_pred             eeeCCCCCCC-ccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccc--cc---
Q 003296          708 KVIDPSKSTG-SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQ--DK---  781 (833)
Q Consensus       708 ~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~--~~---  781 (833)
                      +......... ......||+.|+|||++.+..++.++|||||||++|||++|+.||......  .........  ..   
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~--~~~~~~~~~~~~~~~~  252 (327)
T 3lxl_A          175 KLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAE--FLRMMGCERDVPALSR  252 (327)
T ss_dssp             EECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHH--HHHHCC----CCHHHH
T ss_pred             eecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccch--hhhhcccccccccHHH
Confidence            8775433211 123456889999999999888999999999999999999999999642211  100000000  00   


Q ss_pred             ccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          782 LDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       782 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ....+.......  .....+.++.+++.+||+.||++|||++|++++|+.+
T Consensus       253 ~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~  301 (327)
T 3lxl_A          253 LLELLEEGQRLP--APPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDML  301 (327)
T ss_dssp             HHHHHHTTCCCC--CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC
T ss_pred             HHHHhhcccCCC--CCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            000000000000  0112345788999999999999999999999999875

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=1.1e-41  Score=389.72  Aligned_cols=256  Identities=17%  Similarity=0.179  Sum_probs=203.8

Q ss_pred             HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhh---------hccChhHHHHHHHHHhcCCCCCcccceE
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIF---------QLGSHHKFDKELEVLGKLSNSNVMTPLA  622 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~---------~~~~~~~~~~E~~~l~~l~H~niv~~~~  622 (833)
                      ..+.|...+.||+|+||+||+|... +|+.||||++.......         .....+.+.+|++++++++|||||++++
T Consensus        34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~  113 (504)
T 3q5i_A           34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD  113 (504)
T ss_dssp             GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred             cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence            3467888999999999999999974 78999999995322110         0134578999999999999999999999


Q ss_pred             EEecCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC---Cc
Q 003296          623 YVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK---EP  699 (833)
Q Consensus       623 ~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~---~~  699 (833)
                      +|.+++..|+|||||++|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+|||++.++   .+
T Consensus       114 ~~~~~~~~~lv~e~~~gg~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~  188 (504)
T 3q5i_A          114 VFEDKKYFYLVTEFYEGGELFEQIIN--RHKFDECDAANIMKQILSGICYLH---KHNIVHRDIKPENILLENKNSLLNI  188 (504)
T ss_dssp             EEECSSEEEEEEECCTTCBHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESSTTCCSSE
T ss_pred             EEEcCCEEEEEEecCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCcHHHEEEecCCCCccE
Confidence            99999999999999999999999876  346999999999999999999999   78999999999999998775   68


Q ss_pred             eeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccc
Q 003296          700 QIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQ  779 (833)
Q Consensus       700 ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~  779 (833)
                      ||+|||+++......   .....+||+.|+|||++. ..|+.++||||+||++|||++|+.||.+.... +........ 
T Consensus       189 kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~-~~~~~i~~~-  262 (504)
T 3q5i_A          189 KIVDFGLSSFFSKDY---KLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQ-DIIKKVEKG-  262 (504)
T ss_dssp             EECCCTTCEECCTTS---CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHC-
T ss_pred             EEEECCCCEEcCCCC---ccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHcC-
Confidence            999999998775432   234568999999999876 46999999999999999999999999764432 222111111 


Q ss_pred             ccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          780 DKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                               ........+...+.++.+++.+||+.||++|||++|+++|
T Consensus       263 ---------~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h  302 (504)
T 3q5i_A          263 ---------KYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALNS  302 (504)
T ss_dssp             ---------CCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             ---------CCCCCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence                     0111111122345678899999999999999999999875

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=1.9e-41  Score=359.49  Aligned_cols=248  Identities=21%  Similarity=0.271  Sum_probs=199.5

Q ss_pred             cCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec----CCceE
Q 003296          557 ANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA----SDSAY  631 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~----~~~~~  631 (833)
                      |...+.||+|+||.||+|.. .++..||+|++....  ......+.|.+|++++++++|||||+++++|..    ....+
T Consensus        28 ~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~  105 (290)
T 1t4h_A           28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRK--LTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV  105 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGG--SCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEE
T ss_pred             EEeeeeccCCCCeEEEEeEecCCceEEEEEEecchh--hCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEE
Confidence            55667899999999999997 478899999984221  112235679999999999999999999999875    35589


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCC--eeecCCCccceeeC-CCCCceeccceeee
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNP--ILLLDLSTRNIFLK-SLKEPQIGDIELCK  708 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~Nill~-~~~~~ki~dfgl~~  708 (833)
                      +||||+++|+|.+++..  ...+++..+..++.|++.||+|||   +.+  |+||||||+||+++ .++.+||+|||++.
T Consensus       106 lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~  180 (290)
T 1t4h_A          106 LVTELMTSGTLKTYLKR--FKVMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLAT  180 (290)
T ss_dssp             EEEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGG
T ss_pred             EEEEecCCCCHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHH---cCCCCEEECCCCHHHEEEECCCCCEEEeeCCCcc
Confidence            99999999999999986  346899999999999999999999   666  99999999999998 78999999999997


Q ss_pred             eeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          709 VIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       709 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      .....    ......||+.|+|||++. ..++.++||||+||++|||++|+.||..................  ....  
T Consensus       181 ~~~~~----~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~--~~~~--  251 (290)
T 1t4h_A          181 LKRAS----FAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVK--PASF--  251 (290)
T ss_dssp             GCCTT----SBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCC--CGGG--
T ss_pred             ccccc----ccccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHhccCC--cccc--
Confidence            54322    224567999999999876 45999999999999999999999999876555444333222110  0000  


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                              ....+.++.+++.+||+.||++|||++|+++|
T Consensus       252 --------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h  283 (290)
T 1t4h_A          252 --------DKVAIPEVKEIIEGCIRQNKDERYSIKDLLNH  283 (290)
T ss_dssp             --------GGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             --------CCCCCHHHHHHHHHHccCChhhCCCHHHHhhC
Confidence                    01123467899999999999999999999875

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=6.4e-42  Score=387.25  Aligned_cols=195  Identities=21%  Similarity=0.222  Sum_probs=153.5

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC-----C
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS-----D  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~-----~  628 (833)
                      +.|+..+.||+|+||.||+|+.. +|+.||||++....  ......+.+.+|+++|++++|||||+++++|...     .
T Consensus        53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~--~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~  130 (458)
T 3rp9_A           53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVF--EDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFD  130 (458)
T ss_dssp             TTEEECCC-------CEEEEEECC--CEEEEEEECSTT--SSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred             CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhh--cCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCc
Confidence            46888999999999999999974 79999999994321  1222356799999999999999999999999543     5


Q ss_pred             ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeee
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK  708 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~  708 (833)
                      ..|+||||+ +|+|.+++..  ...+++..+..++.|++.||+|||   +.+||||||||+|||++.++.+||+|||+|+
T Consensus       131 ~~~lv~e~~-~~~L~~~~~~--~~~l~~~~~~~~~~qi~~aL~~LH---~~~iiHrDlKp~NILl~~~~~~kl~DFGla~  204 (458)
T 3rp9_A          131 ELYVVLEIA-DSDFKKLFRT--PVYLTELHIKTLLYNLLVGVKYVH---SAGILHRDLKPANCLVNQDCSVKVCDFGLAR  204 (458)
T ss_dssp             CEEEEECCC-SEEHHHHHHS--SCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTCB
T ss_pred             eEEEEEecc-ccchhhhccc--CCCCCHHHHHHHHHHHHHHHHHHH---hCCcCCCCCChhhEEECCCCCEeecccccch
Confidence            689999998 4799999976  456999999999999999999999   7899999999999999999999999999998


Q ss_pred             eeCCCCCC-------------------------Cccccccccccccccccc-cCCcccccCcchhhHHHHHHHHh
Q 003296          709 VIDPSKST-------------------------GSLSTVAGSVGYIPPEYA-YTMRVTMAGNVYSFGVILLELLT  757 (833)
Q Consensus       709 ~~~~~~~~-------------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~S~Gvvl~ellt  757 (833)
                      ........                         ......+||+.|||||++ .+..|+.++|||||||++|||+|
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~ellt  279 (458)
T 3rp9_A          205 TVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLN  279 (458)
T ss_dssp             CTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHT
T ss_pred             hccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHH
Confidence            76422110                         123456899999999976 45679999999999999999999

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=6.8e-42  Score=369.47  Aligned_cols=259  Identities=19%  Similarity=0.261  Sum_probs=202.3

Q ss_pred             HHhcCCccccccCcccEEEEEEc------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS  627 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~  627 (833)
                      .+.|...+.||+|+||.||+|+.      .++..||||++.....   .....+|.+|+.++++++|||||++++++..+
T Consensus        29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~  105 (327)
T 2yfx_A           29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCS---EQDELDFLMEALIISKFNHQNIVRCIGVSLQS  105 (327)
T ss_dssp             GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCC---HHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccc---hhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCC
Confidence            35688889999999999999984      3678999999942211   12346799999999999999999999999999


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCC-----CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC---CCCc
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLE-----NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS---LKEP  699 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~-----~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~---~~~~  699 (833)
                      +..|+||||+++|+|.+++.....     ..+++.+++.++.|++.||+|||   +.+|+||||||+||+++.   +..+
T Consensus       106 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~i~H~dlkp~NIli~~~~~~~~~  182 (327)
T 2yfx_A          106 LPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVA  182 (327)
T ss_dssp             SSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCE
T ss_pred             CCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeecCcCCHhHEEEecCCCcceE
Confidence            999999999999999999986432     35899999999999999999999   789999999999999984   4469


Q ss_pred             eeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcc
Q 003296          700 QIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQ  778 (833)
Q Consensus       700 ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~  778 (833)
                      |++|||+++...............||+.|+|||++.+..++.++|||||||++|||+| |+.||...... .........
T Consensus       183 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~-~~~~~~~~~  261 (327)
T 2yfx_A          183 KIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ-EVLEFVTSG  261 (327)
T ss_dssp             EECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH-HHHHHHHTT
T ss_pred             EECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHH-HHHHHHhcC
Confidence            9999999976543332222244678999999999988889999999999999999998 99999754322 211111111


Q ss_pred             cccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          779 QDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                       ...      ...      ...+..+.+++.+||+.||++|||+.|++++|+.+
T Consensus       262 -~~~------~~~------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~  302 (327)
T 2yfx_A          262 -GRM------DPP------KNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYC  302 (327)
T ss_dssp             -CCC------CCC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -CCC------CCC------CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence             100      000      11234678999999999999999999999999864

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.9e-42  Score=376.23  Aligned_cols=260  Identities=14%  Similarity=0.125  Sum_probs=202.8

Q ss_pred             HhcCCccccccCcccEEEEEEcC---------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCccc------
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP---------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMT------  619 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~---------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~------  619 (833)
                      +.|...+.||+|+||.||+|+..         +++.||||++..         .+.+.+|++++++++|||||+      
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~---------~~~~~~E~~~l~~l~h~niv~~~~~~~  112 (352)
T 2jii_A           42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAK---------DGRLFNEQNFFQRAAKPLQVNKWKKLY  112 (352)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEET---------TSTHHHHHHHHHHHCCHHHHHHHHHHT
T ss_pred             CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEecc---------cchHHHHHHHHHHhcccchhhhhhhhc
Confidence            46788899999999999999975         389999999842         146899999999999999998      


Q ss_pred             ---------ceEEEec-CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCcc
Q 003296          620 ---------PLAYVLA-SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTR  689 (833)
Q Consensus       620 ---------~~~~~~~-~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~  689 (833)
                               +++++.. ++..|+||||+ +|+|.+++.......+++.++..++.|++.||+|||   +.+|+||||||+
T Consensus       113 ~~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~  188 (352)
T 2jii_A          113 STPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLH---ENEYVHGNVTAE  188 (352)
T ss_dssp             TCTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCGG
T ss_pred             cCCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHH
Confidence                     6777776 67899999999 999999998753457999999999999999999999   779999999999


Q ss_pred             ceeeCCCC--CceeccceeeeeeCCCCCC-----CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcc
Q 003296          690 NIFLKSLK--EPQIGDIELCKVIDPSKST-----GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAV  762 (833)
Q Consensus       690 Nill~~~~--~~ki~dfgl~~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~  762 (833)
                      ||+++.++  .+||+|||+++........     .......||+.|+|||++.+..++.++|||||||++|||++|+.||
T Consensus       189 NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf  268 (352)
T 2jii_A          189 NIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPW  268 (352)
T ss_dssp             GEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTT
T ss_pred             HEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCc
Confidence            99999988  8999999999876432211     1123458999999999999989999999999999999999999999


Q ss_pred             cCCc-cHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          763 NQGN-ELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       763 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .... ....................+....     ....+.++.+++.+||+.||++|||++||++.|+++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~  334 (352)
T 2jii_A          269 TNCLPNTEDIMKQKQKFVDKPGPFVGPCGH-----WIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEAL  334 (352)
T ss_dssp             GGGTTCHHHHHHHHHHHHHSCCCEECTTSC-----EECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred             ccCCcCHHHHHHHHHhccCChhhhhhhccc-----cCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHH
Confidence            8543 2211111111000111111111000     001235688999999999999999999999999875

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.6e-41  Score=367.25  Aligned_cols=256  Identities=19%  Similarity=0.271  Sum_probs=197.6

Q ss_pred             hcCCccccccCcccEEEEEEcCC-----CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          556 VANPLNVELKTRFSTYYKAVMPS-----GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~~-----~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      .|...+.||+|+||.||+|....     +..||||++....   .......|.+|++++++++|||||++++++...+..
T Consensus        45 ~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  121 (333)
T 1mqb_A           45 CVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY---TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPM  121 (333)
T ss_dssp             TEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC---CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSE
T ss_pred             HhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCC---CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCc
Confidence            34456899999999999998642     3469999995321   112346799999999999999999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      ++||||+++|+|.+++... ...+++.++..++.|+++||+|||   +.+|+||||||+||+++.++.+||+|||+++..
T Consensus       122 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~  197 (333)
T 1mqb_A          122 MIITEYMENGALDKFLREK-DGEFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVL  197 (333)
T ss_dssp             EEEEECCTTEEHHHHHHHT-TTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC----
T ss_pred             EEEEeCCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChheEEECCCCcEEECCCCcchhh
Confidence            9999999999999999763 346999999999999999999999   778999999999999999999999999999876


Q ss_pred             CCCCCC-CccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          711 DPSKST-GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       711 ~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ...... .......||+.|+|||++.+..++.++|||||||++|||++ |+.||.+.... +.... ........     
T Consensus       198 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~-~~~~~-~~~~~~~~-----  270 (333)
T 1mqb_A          198 EDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNH-EVMKA-INDGFRLP-----  270 (333)
T ss_dssp             -------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH-HHHHH-HHTTCCCC-----
T ss_pred             ccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHH-HHHHH-HHCCCcCC-----
Confidence            433211 11223457889999999988899999999999999999999 99999754332 11111 11111000     


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                       ..      ...+.++.+++.+||+.||++||++.|++++|+++
T Consensus       271 -~~------~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~  307 (333)
T 1mqb_A          271 -TP------MDCPSAIYQLMMQCWQQERARRPKFADIVSILDKL  307 (333)
T ss_dssp             -CC------TTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred             -Cc------ccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence             00      12234678999999999999999999999999864

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=5.7e-41  Score=358.55  Aligned_cols=256  Identities=16%  Similarity=0.209  Sum_probs=202.9

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec--CCce
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA--SDSA  630 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~--~~~~  630 (833)
                      .+.|...+.||+|+||.||+|.. .+|+.||||++............+.+.+|++++++++||||+++++++..  .+..
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM   83 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence            35788999999999999999997 47899999999532222222345789999999999999999999999853  4578


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      ++||||+++| |.+++.......+++..+..++.|+++||+|||   +.+|+||||||+||+++.++.+|++|||+++..
T Consensus        84 ~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~  159 (305)
T 2wtk_C           84 YMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLH---SQGIVHKDIKPGNLLLTTGGTLKISALGVAEAL  159 (305)
T ss_dssp             EEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCcccEEEcCCCcEEeecccccccc
Confidence            9999999876 888887655567999999999999999999999   789999999999999999999999999999877


Q ss_pred             CCCCCCCccccccccccccccccccCCc--ccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          711 DPSKSTGSLSTVAGSVGYIPPEYAYTMR--VTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      .............||+.|+|||++.+..  ++.++|||||||++|||++|+.||.+.... ...........        
T Consensus       160 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-~~~~~i~~~~~--------  230 (305)
T 2wtk_C          160 HPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIY-KLFENIGKGSY--------  230 (305)
T ss_dssp             CTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHCCC--------
T ss_pred             CccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHH-HHHHHHhcCCC--------
Confidence            5433333334567999999999987543  478999999999999999999999754322 22211111100        


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ....      .....+.+++.+||+.||++|||++|++++
T Consensus       231 ~~~~------~~~~~l~~li~~~l~~dp~~Rps~~~ll~~  264 (305)
T 2wtk_C          231 AIPG------DCGPPLSDLLKGMLEYEPAKRFSIRQIRQH  264 (305)
T ss_dssp             CCCS------SSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred             CCCC------ccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            0111      123467789999999999999999999975

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.4e-41  Score=361.91  Aligned_cols=256  Identities=20%  Similarity=0.251  Sum_probs=200.4

Q ss_pred             cCCccccccCcccEEEEEEcC-C---CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce-E
Q 003296          557 ANPLNVELKTRFSTYYKAVMP-S---GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA-Y  631 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~-~---~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~-~  631 (833)
                      |+..+.||+|+||.||+|... +   +..||||++.....   ....+.|.+|++++++++|||||++++++...+.. +
T Consensus        23 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   99 (298)
T 3pls_A           23 THSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITE---MQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPH   99 (298)
T ss_dssp             EEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCS---HHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred             EccCceeccCCCceEEEEEEecCCCceeeeeeeecccccc---HHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcE
Confidence            445588999999999999853 2   34799999853221   22356899999999999999999999999876665 9


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      +||||+.+|+|.+++... ...+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++...
T Consensus       100 ~v~e~~~~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~  175 (298)
T 3pls_A          100 VLLPYMCHGDLLQFIRSP-QRNPTVKDLISFGLQVARGMEYLA---EQKFVHRDLAARNCMLDESFTVKVADFGLARDIL  175 (298)
T ss_dssp             EEECCCTTCBHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTT
T ss_pred             EEEecccCCCHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEEeCcCCCccccc
Confidence            999999999999999863 346899999999999999999999   7789999999999999999999999999997653


Q ss_pred             CCC--CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          712 PSK--STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       712 ~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      ...  .........||+.|+|||.+.+..++.++|||||||++|||++|..|+................ ...      .
T Consensus       176 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~-~~~------~  248 (298)
T 3pls_A          176 DREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQG-RRL------P  248 (298)
T ss_dssp             TGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGHHHHHHTT-CCC------C
T ss_pred             CCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHHHHHhhcC-CCC------C
Confidence            221  1112234678999999999999899999999999999999999666654333322221111111 000      0


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ..      ...+.++.+++.+||+.||++|||++|++++|+++
T Consensus       249 ~~------~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~  285 (298)
T 3pls_A          249 QP------EYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQI  285 (298)
T ss_dssp             CC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CC------ccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence            00      11234678999999999999999999999999875

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=1.4e-41  Score=368.10  Aligned_cols=251  Identities=18%  Similarity=0.250  Sum_probs=205.9

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ..|...+.||+|+||.||+|... +++.||+|++... ........+.+.+|++++++++|||||++++++.+.+..|+|
T Consensus        41 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~-~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  119 (335)
T 2owb_A           41 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKS-LLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV  119 (335)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGG-GCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechh-hhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence            46778899999999999999975 6889999998422 111223356799999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++++|.+++..  ...+++.++..++.|+++||+|||   +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus       120 ~e~~~~~~L~~~~~~--~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~  194 (335)
T 2owb_A          120 LELCRRRSLLELHKR--RKALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD  194 (335)
T ss_dssp             ECCCTTCBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECCST
T ss_pred             EecCCCCCHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHH---HCCCEecCCCchhEEEcCCCCEEEeeccCceecccC
Confidence            999999999999875  346899999999999999999999   779999999999999999999999999999876533


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      ..  ......||+.|+|||++.+..++.++|||||||++|||++|+.||........+.... .....        +.. 
T Consensus       195 ~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~-~~~~~--------~~~-  262 (335)
T 2owb_A          195 GE--RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIK-KNEYS--------IPK-  262 (335)
T ss_dssp             TC--CBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHH-HTCCC--------CCT-
T ss_pred             cc--cccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHh-cCCCC--------CCc-
Confidence            22  2245679999999999998889999999999999999999999997654332222111 11000        110 


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                           ....++.+++.+||+.||++|||++|++++
T Consensus       263 -----~~~~~~~~li~~~l~~dp~~Rps~~ell~~  292 (335)
T 2owb_A          263 -----HINPVAASLIQKMLQTDPTARPTINELLND  292 (335)
T ss_dssp             -----TSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             -----cCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence                 122457789999999999999999999874

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=7.8e-42  Score=381.93  Aligned_cols=200  Identities=24%  Similarity=0.219  Sum_probs=173.9

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC------CCCCcccceEEEecC
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL------SNSNVMTPLAYVLAS  627 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l------~H~niv~~~~~~~~~  627 (833)
                      ..|+..+.||+|+||.||+|... +|+.||||++....     ...+.+.+|+++++.+      +|+|||++++++...
T Consensus        97 ~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~-----~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~  171 (429)
T 3kvw_A           97 YRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEK-----RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFR  171 (429)
T ss_dssp             TTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCH-----HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEET
T ss_pred             CcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCcc-----chHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccC
Confidence            45888899999999999999864 68999999995321     1235678899888877      577999999999999


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC--ceeccce
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE--PQIGDIE  705 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~--~ki~dfg  705 (833)
                      +..++||||++ |+|.+++.......+++..+..++.|++.||+|||   +.+||||||||+|||++.++.  +||+|||
T Consensus       172 ~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NILl~~~~~~~vkL~DFG  247 (429)
T 3kvw_A          172 NHICMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALH---KNRIIHCDLKPENILLKQQGRSGIKVIDFG  247 (429)
T ss_dssp             TEEEEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HHTEECSCCSGGGEEESSTTSCCEEECCCT
T ss_pred             CeEEEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEccCCCcceEEeecc
Confidence            99999999996 69999998765556999999999999999999999   779999999999999999887  9999999


Q ss_pred             eeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccH
Q 003296          706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNEL  768 (833)
Q Consensus       706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~  768 (833)
                      +++.....     ....+||+.|||||++.+..|+.++|||||||++|||+||+.||.+....
T Consensus       248 ~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~~~  305 (429)
T 3kvw_A          248 SSCYEHQR-----VYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDEG  305 (429)
T ss_dssp             TCEETTCC-----CCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             cceecCCc-----ccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCCHH
Confidence            99765322     23568999999999999999999999999999999999999999865543

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=5.2e-42  Score=361.39  Aligned_cols=250  Identities=20%  Similarity=0.287  Sum_probs=196.8

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC-CceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS-DSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~-~~~~lv  633 (833)
                      +.|+..+.||+|+||.||+|.. +|+.||||+++..      ...+.|.+|++++++++|||||++++++... +..++|
T Consensus        21 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~------~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv   93 (278)
T 1byg_A           21 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND------ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV   93 (278)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCC------C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEE
T ss_pred             hhceEEeEEecCCCceEEEEEE-cCCEEEEEEecch------hHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEE
Confidence            4677889999999999999987 5899999999422      2356899999999999999999999997655 579999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++.......+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus        94 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~  170 (278)
T 1byg_A           94 TEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST  170 (278)
T ss_dssp             ECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEECCCCC-------
T ss_pred             EecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHH---hCCccccCCCcceEEEeCCCcEEEeecccccccccc
Confidence            99999999999998643334899999999999999999999   788999999999999999999999999998865432


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      .     ....+|+.|+|||++.+..++.++|||||||++|||+| |+.||....... ...... ...      ..... 
T Consensus       171 ~-----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~-~~~~~~-~~~------~~~~~-  236 (278)
T 1byg_A          171 Q-----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD-VVPRVE-KGY------KMDAP-  236 (278)
T ss_dssp             ----------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGG-HHHHHT-TTC------CCCCC-
T ss_pred             c-----cCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHH-HHHHHh-cCC------CCCCc-
Confidence            2     23468899999999988889999999999999999998 999997543221 111111 100      00011 


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR  833 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r  833 (833)
                           ...+.++.+++.+||+.||++|||+.|+++.|++++
T Consensus       237 -----~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~  272 (278)
T 1byg_A          237 -----DGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIK  272 (278)
T ss_dssp             -----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             -----ccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHH
Confidence                 122456789999999999999999999999998763

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=2.5e-41  Score=364.97  Aligned_cols=255  Identities=24%  Similarity=0.285  Sum_probs=201.9

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceE--EEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCce
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSY--FIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~v--avK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~  630 (833)
                      ++|+..+.||+|+||.||+|... +|..+  |||++...   ......+.+.+|+++++++ +|||||++++++..++..
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~---~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~  101 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEY---ASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYL  101 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC---------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEE
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccc---cchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCce
Confidence            46778899999999999999974 66654  99998422   1223456799999999999 899999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCC--------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC
Q 003296          631 YLFYEYAPKGTLFDVLHGCL--------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL  696 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~  696 (833)
                      ++||||+++|+|.+++....              ...+++.+++.++.|+++||+|||   +.+|+||||||+||+++.+
T Consensus       102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~  178 (327)
T 1fvr_A          102 YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGEN  178 (327)
T ss_dssp             EEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGG
T ss_pred             EEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCccceEEEcCC
Confidence            99999999999999998642              236899999999999999999999   7899999999999999999


Q ss_pred             CCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHh
Q 003296          697 KEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRN  775 (833)
Q Consensus       697 ~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~  775 (833)
                      +.+||+|||+++......   ......+|+.|+|||++.+..++.++|||||||++|||+| |+.||.+.... ......
T Consensus       179 ~~~kL~Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~-~~~~~~  254 (327)
T 1fvr_A          179 YVAKIADFGLSRGQEVYV---KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCA-ELYEKL  254 (327)
T ss_dssp             GCEEECCTTCEESSCEEC---CC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHH-HHHHHG
T ss_pred             CeEEEcccCcCccccccc---cccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHH-HHHHHh
Confidence            999999999997432211   1133567889999999988889999999999999999998 99999754332 222111


Q ss_pred             hcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          776 SAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                       .....      ....      ...+.++.+++.+||+.||++|||++|++++|+++
T Consensus       255 -~~~~~------~~~~------~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~  298 (327)
T 1fvr_A          255 -PQGYR------LEKP------LNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM  298 (327)
T ss_dssp             -GGTCC------CCCC------TTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -hcCCC------CCCC------CCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence             11100      0000      12234678999999999999999999999999864

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=7.9e-41  Score=363.66  Aligned_cols=264  Identities=19%  Similarity=0.232  Sum_probs=208.8

Q ss_pred             HHHHHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhc--CCCCCcccceEEEecCC
Q 003296          551 KAMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGK--LSNSNVMTPLAYVLASD  628 (833)
Q Consensus       551 ~~~~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~--l~H~niv~~~~~~~~~~  628 (833)
                      ....+.|...+.||+|+||.||+|+. +|+.||||++...       ..+.+.+|++++..  ++|||||++++++...+
T Consensus        38 ~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~-------~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~  109 (342)
T 1b6c_B           38 RTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR-------EERSWFREAEIYQTVMLRHENILGFIAADNKDN  109 (342)
T ss_dssp             HHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG-------GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCC
T ss_pred             ccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch-------hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccC
Confidence            35678899999999999999999998 6999999999421       23578899999987  78999999999998876


Q ss_pred             ----ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCC-----CCCeeecCCCccceeeCCCCCc
Q 003296          629 ----SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFT-----SNPILLLDLSTRNIFLKSLKEP  699 (833)
Q Consensus       629 ----~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~-----~~~iiHrdlk~~Nill~~~~~~  699 (833)
                          ..++||||+++|+|.+++.+   ..++|.+++.++.|++.||+|||...     +.+|+||||||+||+++.++.+
T Consensus       110 ~~~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~  186 (342)
T 1b6c_B          110 GTWTQLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTC  186 (342)
T ss_dssp             SSCCCEEEEECCCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCE
T ss_pred             CccceeEEEEeecCCCcHHHHHhc---cCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCE
Confidence                78999999999999999975   35899999999999999999999421     4689999999999999999999


Q ss_pred             eeccceeeeeeCCCCCCC--ccccccccccccccccccCC------cccccCcchhhHHHHHHHHhC----------CCc
Q 003296          700 QIGDIELCKVIDPSKSTG--SLSTVAGSVGYIPPEYAYTM------RVTMAGNVYSFGVILLELLTG----------KTA  761 (833)
Q Consensus       700 ki~dfgl~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~S~Gvvl~elltg----------~~p  761 (833)
                      ||+|||+++.........  ......||+.|+|||++.+.      .++.++|||||||++|||+||          +.|
T Consensus       187 kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p  266 (342)
T 1b6c_B          187 CIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLP  266 (342)
T ss_dssp             EECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCT
T ss_pred             EEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccC
Confidence            999999998775433211  12346799999999998765      455799999999999999999          678


Q ss_pred             ccCCc----cHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          762 VNQGN----ELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       762 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      |....    ....+.......      ...+.+... ......+..+.+++.+||+.||++|||++||+++|+++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i  334 (342)
T 1b6c_B          267 YYDLVPSDPSVEEMRKVVCEQ------KLRPNIPNR-WQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQL  334 (342)
T ss_dssp             TTTTSCSSCCHHHHHHHHTTS------CCCCCCCGG-GGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred             ccccCcCcccHHHHHHHHHHH------HhCCCCccc-ccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHH
Confidence            86432    122222211111      111111110 01124566788999999999999999999999999876

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=9.6e-42  Score=364.31  Aligned_cols=252  Identities=20%  Similarity=0.230  Sum_probs=203.5

Q ss_pred             HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~  631 (833)
                      ..+.|...+.||+|+||.||+|+.. +|+.||||++....    ....+.+.+|++++++++||||+++++++...+..+
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   82 (304)
T 2jam_A            7 IRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSP----AFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYY   82 (304)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC----------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             hhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEeccc----ccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEE
Confidence            4567889999999999999999974 79999999995321    123457899999999999999999999999999999


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee---CCCCCceeccceeee
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL---KSLKEPQIGDIELCK  708 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill---~~~~~~ki~dfgl~~  708 (833)
                      +||||+++|+|.+++..  ...+++.++..++.|++.||+|||   +.+|+||||||+||++   +.++.+|++|||+++
T Consensus        83 lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~  157 (304)
T 2jam_A           83 LVMQLVSGGELFDRILE--RGVYTEKDASLVIQQVLSAVKYLH---ENGIVHRDLKPENLLYLTPEENSKIMITDFGLSK  157 (304)
T ss_dssp             EEECCCCSCBHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTC
T ss_pred             EEEEcCCCccHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEecCCCCCCEEEccCCcce
Confidence            99999999999999875  346899999999999999999999   7799999999999999   788999999999987


Q ss_pred             eeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          709 VIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       709 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      .....    ......||+.|+|||++.+..++.++||||+||++|||++|+.||.+..... .............     
T Consensus       158 ~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~i~~~~~~~~-----  227 (304)
T 2jam_A          158 MEQNG----IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESK-LFEKIKEGYYEFE-----  227 (304)
T ss_dssp             CCCCB----TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHCCCCCC-----
T ss_pred             ecCCC----ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHcCCCCCC-----
Confidence            54322    2244679999999999999899999999999999999999999997544322 1111111100000     


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                           .......+.++.+++.+||+.||++|||+.|++++
T Consensus       228 -----~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h  262 (304)
T 2jam_A          228 -----SPFWDDISESAKDFICHLLEKDPNERYTCEKALSH  262 (304)
T ss_dssp             -----TTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             -----ccccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence                 00111234578899999999999999999999874

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=2.2e-41  Score=368.94  Aligned_cols=265  Identities=14%  Similarity=0.189  Sum_probs=207.2

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccC--------------hhHHHHHHHHHhcCCCCCcccc
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGS--------------HHKFDKELEVLGKLSNSNVMTP  620 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~--------------~~~~~~E~~~l~~l~H~niv~~  620 (833)
                      ++|...+.||+|+||.||+|.. +|+.||||++... .......              .+.|.+|++++++++|||||++
T Consensus        31 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~  108 (348)
T 2pml_X           31 NDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKS-LLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC  108 (348)
T ss_dssp             TTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHH-HHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred             CceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecc-cccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence            4677889999999999999999 9999999999422 1111111              1789999999999999999999


Q ss_pred             eEEEecCCceEEEEeeCCCCChhhh------hhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCC-CCeeecCCCccceee
Q 003296          621 LAYVLASDSAYLFYEYAPKGTLFDV------LHGCLENALDWASRYSIAVGVAQGLAFLHGFTS-NPILLLDLSTRNIFL  693 (833)
Q Consensus       621 ~~~~~~~~~~~lv~ey~~~g~L~~~------l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~-~~iiHrdlk~~Nill  693 (833)
                      ++++..++..++||||+++|+|.++      +.......+++..+..++.|++.||+|||   + .+|+||||||+||++
T Consensus       109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dl~p~Nil~  185 (348)
T 2pml_X          109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIH---NEKNICHRDVKPSNILM  185 (348)
T ss_dssp             SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTSCEECCCCCGGGEEE
T ss_pred             EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHh---ccCCEeecCCChHhEEE
Confidence            9999999999999999999999999      66543567999999999999999999999   6 899999999999999


Q ss_pred             CCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCC-cccc-cCcchhhHHHHHHHHhCCCcccCCccHHHH
Q 003296          694 KSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTM-RVTM-AGNVYSFGVILLELLTGKTAVNQGNELAKW  771 (833)
Q Consensus       694 ~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~  771 (833)
                      +.++.+||+|||.++.....    ......||+.|+|||++.+. .++. ++|||||||++|||++|+.||.........
T Consensus       186 ~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~  261 (348)
T 2pml_X          186 DKNGRVKLSDFGESEYMVDK----KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVEL  261 (348)
T ss_dssp             CTTSCEEECCCTTCEECBTT----EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHHH
T ss_pred             cCCCcEEEeccccccccccc----cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHHH
Confidence            99999999999999876433    22456799999999999877 6766 999999999999999999999865543333


Q ss_pred             HHHhhcccccccc----cccccccC-CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          772 VLRNSAQQDKLDH----ILDFNVSR-TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       772 ~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .............    ...+.... ........+.++.+++.+||+.||++|||+.|+++|
T Consensus       262 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~h  323 (348)
T 2pml_X          262 FNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKH  323 (348)
T ss_dssp             HHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             HHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            2222211111100    00000000 000012234578899999999999999999999874

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=2.2e-41  Score=360.50  Aligned_cols=256  Identities=20%  Similarity=0.277  Sum_probs=198.6

Q ss_pred             hcCCccccccCcccEEEEEEcCC----CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec-CCce
Q 003296          556 VANPLNVELKTRFSTYYKAVMPS----GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA-SDSA  630 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~-~~~~  630 (833)
                      .|+..+.||+|+||.||+|+..+    +..||||++....   .....+.|.+|++++++++|||||+++++|.. ++..
T Consensus        26 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  102 (298)
T 3f66_A           26 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT---DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSP  102 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCC---SHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCC
T ss_pred             ehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCC---CHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCce
Confidence            46677899999999999998632    3468999985322   12234679999999999999999999999754 5678


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      ++||||+++|+|.++++.. ...+++.++..++.|+++||+|||   +.+|+||||||+||+++.++.+||+|||+++..
T Consensus       103 ~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~ql~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~  178 (298)
T 3f66_A          103 LVVLPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDM  178 (298)
T ss_dssp             EEEEECCTTCBHHHHHHCT-TCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECSCGGGCCC
T ss_pred             EEEEeCCCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEECCCCCEEECcccccccc
Confidence            9999999999999999753 346899999999999999999999   789999999999999999999999999999866


Q ss_pred             CCCCC--CCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccccccccc
Q 003296          711 DPSKS--TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       711 ~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (833)
                      .....  ........||+.|+|||++.+..++.++||||+||++|||++ |.+||........ .........   . ..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~-~~~~~~~~~---~-~~  253 (298)
T 3f66_A          179 YDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDI-TVYLLQGRR---L-LQ  253 (298)
T ss_dssp             SCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTH-HHHHHTTCC---C-CC
T ss_pred             cccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHH-HHHHhcCCC---C-CC
Confidence            43221  112234578899999999988899999999999999999999 5556654332211 111111100   0 00


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                         .      ...+.++.+++.+||+.||++|||++|+++.|+++
T Consensus       254 ---~------~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~  289 (298)
T 3f66_A          254 ---P------EYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAI  289 (298)
T ss_dssp             ---C------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             ---C------ccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence               0      01234678999999999999999999999999875

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=1.8e-41  Score=359.74  Aligned_cols=255  Identities=18%  Similarity=0.206  Sum_probs=201.4

Q ss_pred             hcCCcc-ccccCcccEEEEEEc---CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296          556 VANPLN-VELKTRFSTYYKAVM---PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       556 ~~~~~~-~ig~g~~g~vy~~~~---~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~  631 (833)
                      .|...+ .||+|+||.||+|..   .+++.||||++....  ......++|.+|++++++++||||+++++++ ..+..+
T Consensus        17 ~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~   93 (291)
T 1xbb_A           17 LLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEA--NDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWM   93 (291)
T ss_dssp             GEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-------CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEE
T ss_pred             hhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccc--cCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcE
Confidence            455566 899999999999964   357899999995321  1222356899999999999999999999999 567789


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      +||||+++|+|.+++..  ...+++.++..++.|+++||+|||   +.+|+||||||+||+++.++.+||+|||+++...
T Consensus        94 lv~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~  168 (291)
T 1xbb_A           94 LVMEMAELGPLNKYLQQ--NRHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALR  168 (291)
T ss_dssp             EEEECCTTEEHHHHHHH--CTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECC
T ss_pred             EEEEeCCCCCHHHHHHh--CcCCCHHHHHHHHHHHHHHHHHHH---hCCeEcCCCCcceEEEeCCCcEEEccCCcceeec
Confidence            99999999999999986  346899999999999999999999   7799999999999999999999999999998765


Q ss_pred             CCCCCC-ccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          712 PSKSTG-SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       712 ~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      ...... ......||+.|+|||++.+..++.++|||||||++|||+| |+.||.+..... .... ......      ..
T Consensus       169 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~-~~~~-~~~~~~------~~  240 (291)
T 1xbb_A          169 ADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE-VTAM-LEKGER------MG  240 (291)
T ss_dssp             TTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH-HHHH-HHTTCC------CC
T ss_pred             cCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHH-HHHH-HHcCCC------CC
Confidence            433211 1123457889999999988889999999999999999999 999997544322 1111 111110      00


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ..      ...+.++.+++.+||+.||++||++.||++.|+++
T Consensus       241 ~~------~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~  277 (291)
T 1xbb_A          241 CP------AGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY  277 (291)
T ss_dssp             CC------TTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred             CC------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            11      12245688999999999999999999999999864

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.6e-40  Score=371.56  Aligned_cols=388  Identities=26%  Similarity=0.289  Sum_probs=271.4

Q ss_pred             CCCCCEEECCCCCCCCcc-cccCCCCCCEEECCCCCCCCcccccccCCCCC-------------CEEeCcCCcCCCCCCc
Q 003296            7 IDGLKLLNFSKNELVSLP-TFNGFAGLEVLDFSSNNLNGNINLQFDELVSL-------------KSLNLSKNKFNGFLPI   72 (833)
Q Consensus         7 l~~L~~L~ls~N~l~~i~-~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L-------------~~L~Ls~N~l~~~~p~   72 (833)
                      .+.|+.|++++|.+..+| +|..+++|++|++++|++.+..|..|+.+.+|             ++|++++|.++++++ 
T Consensus        10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~-   88 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE-   88 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS-
T ss_pred             cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC-
Confidence            578999999999998897 59999999999999999999999999998875             999999999997543 


Q ss_pred             ccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCcc
Q 003296           73 NLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTL  152 (833)
Q Consensus        73 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  152 (833)
                      .   .++|++|+|++|.+++ +|..   +++|+.|++++|+++++ |..   .++|++|+|++|.+++ +| .|+.+++|
T Consensus        89 ~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L  155 (454)
T 1jl5_A           89 L---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFL  155 (454)
T ss_dssp             C---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred             C---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCC
Confidence            2   4789999999999997 5653   47899999999999863 321   2799999999999997 66 69999999


Q ss_pred             CccccccccccccCChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccC
Q 003296          153 SRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIG  232 (833)
Q Consensus       153 ~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~  232 (833)
                      +.|++++|++++ +|.. ...|++|++++|++.+ +| .+..+++|++|++++|.+++ +|. ..++|+.|++++|.+. 
T Consensus       156 ~~L~l~~N~l~~-lp~~-~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~-~~~~L~~L~l~~n~l~-  228 (454)
T 1jl5_A          156 KIIDVDNNSLKK-LPDL-PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD-LPLSLESIVAGNNILE-  228 (454)
T ss_dssp             CEEECCSSCCSC-CCCC-CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC-CCTTCCEEECCSSCCS-
T ss_pred             CEEECCCCcCcc-cCCC-cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC-CcCcccEEECcCCcCC-
Confidence            999999999986 5543 3579999999999998 45 68999999999999999986 443 2368999999999876 


Q ss_pred             CCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhc
Q 003296          233 EIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFS  312 (833)
Q Consensus       233 ~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  312 (833)
                      .+|  .|..+++|++|++++|++++. |.   .+++|+.|++++|++.+ +|..   .++|+.|++++|.+++.. .   
T Consensus       229 ~lp--~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~-~---  294 (454)
T 1jl5_A          229 ELP--ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS-E---  294 (454)
T ss_dssp             SCC--CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES-C---
T ss_pred             ccc--ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc-C---
Confidence            466  388999999999999999864 43   24789999999999986 4443   378999999999998732 1   


Q ss_pred             CCCcCceeeccCCcCcccCccccccC-CCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCccCCCCcccccceee
Q 003296          313 QLKLLSTMNISWNSLSGSIPSFLSNL-TNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALN  391 (833)
Q Consensus       313 ~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~  391 (833)
                      ..++|++|++++|.+++. +    .+ ++|+.|++++|++++ +|..   +++|++|++++|++++ +|. .....+.|+
T Consensus       295 ~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~-~l~~L~~L~  363 (454)
T 1jl5_A          295 LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE-LPQNLKQLH  363 (454)
T ss_dssp             CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC-CCTTCCEEE
T ss_pred             cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc-hhhhccEEE
Confidence            126789999999998852 2    23 589999999999986 5543   5789999999999884 555 233346788


Q ss_pred             cccccccc--chhhhhccCCCCCEEecccCcCccccchhccCCCCCCeeeCcCCcccc--cCCC
Q 003296          392 LSSNLFEG--PIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSG--VVPK  451 (833)
Q Consensus       392 Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~--~~p~  451 (833)
                      +++|.+++  .+|.++..+        +.|++.+.+|..   +++|+.|++++|++++  .+|.
T Consensus       364 L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~  416 (454)
T 1jl5_A          364 VEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE  416 (454)
T ss_dssp             CCSSCCSSCCCCCTTCCEE--------ECCC---------------------------------
T ss_pred             CCCCCCCcCCCChHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccchh
Confidence            88888888  677665543        345555555542   3667777777777776  4443

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=1.7e-41  Score=358.05  Aligned_cols=255  Identities=19%  Similarity=0.263  Sum_probs=200.2

Q ss_pred             HhcCCccccccCcccEEEEEEcC----CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP----SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      ++|...+.||+|+||.||+|+..    ++..||||++.....   ....+.|.+|++++++++||||+++++++.+ +..
T Consensus        12 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~   87 (281)
T 3cc6_A           12 EDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCT---LDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPT   87 (281)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSC---HHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSC
T ss_pred             cceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccC---chHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCC
Confidence            46778899999999999999853    234699999953211   1235689999999999999999999999864 557


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      ++||||+++|+|.+++... ...+++..+..++.|+++||+|||   +.+|+||||||+||+++.++.+|++|||+++..
T Consensus        88 ~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~  163 (281)
T 3cc6_A           88 WIIMELYPYGELGHYLERN-KNSLKVLTLVLYSLQICKAMAYLE---SINCVHRDIAVRNILVASPECVKLGDFGLSRYI  163 (281)
T ss_dssp             EEEEECCTTCBHHHHHHHH-TTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC
T ss_pred             EEEEecCCCCCHHHHHHhc-cccCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCccceEEECCCCcEEeCccCCCccc
Confidence            9999999999999999753 345899999999999999999999   789999999999999999999999999999866


Q ss_pred             CCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          711 DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      ...... ......||+.|+|||++.+..++.++|||||||++|||+| |+.||.......... .. ......      .
T Consensus       164 ~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~~-~~-~~~~~~------~  234 (281)
T 3cc6_A          164 EDEDYY-KASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIG-VL-EKGDRL------P  234 (281)
T ss_dssp             ----------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHHH-HH-HHTCCC------C
T ss_pred             cccccc-ccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHHHH-HH-hcCCCC------C
Confidence            433211 2234567899999999988889999999999999999998 999997433221111 10 000000      0


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ..      ...+..+.+++.+||+.||++|||+.|++++|+++
T Consensus       235 ~~------~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~  271 (281)
T 3cc6_A          235 KP------DLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDV  271 (281)
T ss_dssp             CC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CC------CCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHH
Confidence            00      01234678999999999999999999999999875

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.1e-41  Score=394.32  Aligned_cols=249  Identities=18%  Similarity=0.231  Sum_probs=197.2

Q ss_pred             ccccCcccEEEEEEcC---CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeCC
Q 003296          562 VELKTRFSTYYKAVMP---SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       562 ~ig~g~~g~vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~  638 (833)
                      .||+|+||.||+|...   ++..||||+++..   ......++|.+|+++|++++|||||+++++|.. +..++|||||+
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~---~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~  418 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQG---TEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAG  418 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCC---CSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCT
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCC---CChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCC
Confidence            6999999999999863   5678999999532   122346789999999999999999999999976 56999999999


Q ss_pred             CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCC-
Q 003296          639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG-  717 (833)
Q Consensus       639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~-  717 (833)
                      +|+|.+++... ...+++.++..++.|+++||+|||   +.+||||||||+|||++.++.+||+|||+++......... 
T Consensus       419 ~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~~L~~LH---~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~  494 (613)
T 2ozo_A          419 GGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLE---EKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYT  494 (613)
T ss_dssp             TCBHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC-------
T ss_pred             CCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceee
Confidence            99999999753 346999999999999999999999   7899999999999999999999999999998764322111 


Q ss_pred             ccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCCchh
Q 003296          718 SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLA  796 (833)
Q Consensus       718 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  796 (833)
                      ......+|+.|+|||++.+..++.++|||||||++|||+| |+.||.+....... . ........      ...     
T Consensus       495 ~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~-~-~i~~~~~~------~~p-----  561 (613)
T 2ozo_A          495 ARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVM-A-FIEQGKRM------ECP-----  561 (613)
T ss_dssp             -------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHHHH-H-HHHTTCCC------CCC-----
T ss_pred             eccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH-H-HHHcCCCC------CCC-----
Confidence            1123456789999999998899999999999999999998 99999865443211 1 11111110      000     


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          797 VRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       797 ~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                       ...+.++.+++.+||+.||++||++.||++.|+.+
T Consensus       562 -~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~  596 (613)
T 2ozo_A          562 -PECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC  596 (613)
T ss_dssp             -TTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHH
T ss_pred             -CcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence             12345788999999999999999999999999864

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.5e-41  Score=369.54  Aligned_cols=269  Identities=19%  Similarity=0.214  Sum_probs=201.0

Q ss_pred             HHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhh-hccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIF-QLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~-~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      ..+.|+..+.||+|+||.||+|+.. +|+.||||++....... .....+.+.+|++++++++|||||+++++|...+..
T Consensus         8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   87 (346)
T 1ua2_A            8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNI   87 (346)
T ss_dssp             -----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCC
T ss_pred             HhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCce
Confidence            3467888999999999999999974 79999999995322111 122245789999999999999999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      ++||||+++ +|.+++... ...+++.++..++.|+++||+|||   +.+|+||||||+||+++.++.+||+|||+++..
T Consensus        88 ~lv~e~~~~-~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~  162 (346)
T 1ua2_A           88 SLVFDFMET-DLEVIIKDN-SLVLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAKSF  162 (346)
T ss_dssp             EEEEECCSE-EHHHHHTTC-CSSCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCCGGGSTT
T ss_pred             EEEEEcCCC-CHHHHHHhc-CcCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCCHHHEEEcCCCCEEEEecccceec
Confidence            999999986 899988753 346889999999999999999999   788999999999999999999999999999866


Q ss_pred             CCCCCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc----ccccc
Q 003296          711 DPSKSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD----KLDHI  785 (833)
Q Consensus       711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~----~~~~~  785 (833)
                      .....  .....+||+.|+|||++.+. .++.++|||||||++|||++|.+||.+................    .....
T Consensus       163 ~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  240 (346)
T 1ua2_A          163 GSPNR--AYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDM  240 (346)
T ss_dssp             TSCCC--CCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSST
T ss_pred             cCCcc--cCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCChhhhhhh
Confidence            43221  22456899999999998754 5899999999999999999999999866544332221111000    00000


Q ss_pred             ------cccc-ccCCc--hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          786 ------LDFN-VSRTS--LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       786 ------~~~~-~~~~~--~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                            +... .....  ......+.++.+++.+||+.||++|||++|+++|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  292 (346)
T 1ua2_A          241 CSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM  292 (346)
T ss_dssp             TSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             ccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcC
Confidence                  0000 00000  0011234578899999999999999999999875

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=5.4e-41  Score=358.32  Aligned_cols=249  Identities=18%  Similarity=0.293  Sum_probs=205.6

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +.|+..+.||+|+||.||+|.. .+|+.||||++....   .....+.+.+|++++++++||||+++++++..++..++|
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   98 (303)
T 3a7i_A           22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEE---AEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWII   98 (303)
T ss_dssp             GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTT---CSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccc---cHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEE
Confidence            4577889999999999999986 579999999995321   123457899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++..   ..+++..+..++.|++.||+|||   ..+|+||||||+||+++.++.+||+|||+++.....
T Consensus        99 ~e~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~  172 (303)
T 3a7i_A           99 MEYLGGGSALDLLEP---GPLDETQIATILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDT  172 (303)
T ss_dssp             EECCTTEEHHHHHTT---SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTT
T ss_pred             EEeCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChheEEECCCCCEEEeecccceecCcc
Confidence            999999999999974   46899999999999999999999   778999999999999999999999999999876543


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      ..  ......||+.|+|||++.+..++.++|||||||++|||++|+.||............ ... . . .    .... 
T Consensus       173 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~-~~~-~-~-~----~~~~-  241 (303)
T 3a7i_A          173 QI--KRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLI-PKN-N-P-P----TLEG-  241 (303)
T ss_dssp             BC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHH-HHS-C-C-C----CCCS-
T ss_pred             cc--ccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHHHHHHh-hcC-C-C-C----CCcc-
Confidence            22  224567999999999999889999999999999999999999999754432211111 110 0 0 0    0111 


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                           ..+..+.+++.+||+.||++|||+.|++++
T Consensus       242 -----~~~~~l~~li~~~l~~dp~~Rps~~~ll~~  271 (303)
T 3a7i_A          242 -----NYSKPLKEFVEACLNKEPSFRPTAKELLKH  271 (303)
T ss_dssp             -----SCCHHHHHHHHHHCCSSGGGSCCHHHHTTC
T ss_pred             -----ccCHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence                 123467899999999999999999999875

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=6.1e-42  Score=368.13  Aligned_cols=266  Identities=20%  Similarity=0.253  Sum_probs=203.3

Q ss_pred             hcCCccccccCcccEEEEEEc-----CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC--C
Q 003296          556 VANPLNVELKTRFSTYYKAVM-----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS--D  628 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~--~  628 (833)
                      .|+..+.||+|+||.||+|..     .+|+.||||++....   .....+.|.+|++++++++|||||++++++.+.  .
T Consensus        32 ~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  108 (318)
T 3lxp_A           32 YLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADA---GPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAA  108 (318)
T ss_dssp             GEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTC---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTT
T ss_pred             HHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEecccc---ChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCc
Confidence            347789999999999998864     278999999995321   122356799999999999999999999999874  5


Q ss_pred             ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeee
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK  708 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~  708 (833)
                      ..++||||+++|+|.+++...   .+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++
T Consensus       109 ~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~i~~~l~~~l~~LH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~  182 (318)
T 3lxp_A          109 SLQLVMEYVPLGSLRDYLPRH---SIGLAQLLLFAQQICEGMAYLH---AQHYIHRDLAARNVLLDNDRLVKIGDFGLAK  182 (318)
T ss_dssp             EEEEEECCCTTCBHHHHGGGS---CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCE
T ss_pred             eEEEEEecccCCcHHHHHhhC---CCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEEcCCCCEEECCccccc
Confidence            689999999999999999853   4899999999999999999999   7889999999999999999999999999998


Q ss_pred             eeCCCCCC-CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcc---cccccc
Q 003296          709 VIDPSKST-GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQ---QDKLDH  784 (833)
Q Consensus       709 ~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~---~~~~~~  784 (833)
                      ........ .......||+.|+|||++.+..++.++|||||||++|||+||+.||................   ......
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (318)
T 3lxp_A          183 AVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTE  262 (318)
T ss_dssp             ECCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred             cccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHH
Confidence            87543321 11234568899999999998899999999999999999999999996422110000000000   000000


Q ss_pred             cccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          785 ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       785 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .+.......  .....+.++.+++.+||+.||++|||++|+++.|+++
T Consensus       263 ~~~~~~~~~--~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l  308 (318)
T 3lxp_A          263 LLERGERLP--RPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTV  308 (318)
T ss_dssp             HHHTTCCCC--CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHhcccCCC--CCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHH
Confidence            011010000  0112345788999999999999999999999999875

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=1.2e-41  Score=366.64  Aligned_cols=258  Identities=21%  Similarity=0.230  Sum_probs=199.1

Q ss_pred             HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccch----hhhccChhHHHHHHHHHhcCCCCCcccceEEEec
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDK----IFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA  626 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~----~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~  626 (833)
                      ...+.|...+.||+|+||.||+|.. .+|+.||||++.....    .........|.+|++++++++|||||++++++..
T Consensus         7 ~l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~   86 (322)
T 2ycf_A            7 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA   86 (322)
T ss_dssp             HHHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEES
T ss_pred             hhhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcC
Confidence            4567899999999999999999997 4789999999853221    1112234568999999999999999999999876


Q ss_pred             CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC---ceecc
Q 003296          627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE---PQIGD  703 (833)
Q Consensus       627 ~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~---~ki~d  703 (833)
                      ++ .|+||||+++|+|.+++..  ...+++..+..++.|+++||+|||   +.+|+||||||+||+++.++.   +||+|
T Consensus        87 ~~-~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~D  160 (322)
T 2ycf_A           87 ED-YYIVLELMEGGELFDKVVG--NKRLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITD  160 (322)
T ss_dssp             SS-EEEEEECCTTEETHHHHST--TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSSSCCEEECC
T ss_pred             Cc-eEEEEecCCCCcHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEecCCCCCeEEEcc
Confidence            55 8999999999999999875  456899999999999999999999   789999999999999987654   99999


Q ss_pred             ceeeeeeCCCCCCCcccccccccccccccccc---CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc
Q 003296          704 IELCKVIDPSKSTGSLSTVAGSVGYIPPEYAY---TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD  780 (833)
Q Consensus       704 fgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~  780 (833)
                      ||+++......   ......||+.|+|||++.   ...++.++|||||||++|||++|+.||................  
T Consensus       161 fg~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~--  235 (322)
T 2ycf_A          161 FGHSKILGETS---LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSG--  235 (322)
T ss_dssp             CTTCEECCCCH---HHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCHHHHHHHT--
T ss_pred             Cccceeccccc---ccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHhC--
Confidence            99998764321   223567999999999863   5668999999999999999999999997533211111100000  


Q ss_pred             cccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          781 KLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       781 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .        ...........+.++.+++.+||+.||++|||+.|++++
T Consensus       236 ~--------~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~h  275 (322)
T 2ycf_A          236 K--------YNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRH  275 (322)
T ss_dssp             C--------CCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             c--------cccCchhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhhC
Confidence            0        000011112234578899999999999999999999864

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=5e-42  Score=371.12  Aligned_cols=265  Identities=17%  Similarity=0.224  Sum_probs=201.1

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +.|+..+.||+|+||.||+|+.. +|+.||||++.....  .....+.+.+|++++++++|||||+++++|...+..++|
T Consensus        25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  102 (331)
T 4aaa_A           25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDD--DKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLV  102 (331)
T ss_dssp             GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSS--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCC--chHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEE
Confidence            46778899999999999999975 699999999843221  112245688999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++++|.++...  ...+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus       103 ~e~~~~~~l~~~~~~--~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  177 (331)
T 4aaa_A          103 FEFVDHTILDDLELF--PNGLDYQVVQKYLFQIINGIGFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAP  177 (331)
T ss_dssp             EECCSEEHHHHHHHS--TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCTTC------
T ss_pred             EecCCcchHHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHH---HCCEEccCcChheEEEcCCCcEEEEeCCCceeecCC
Confidence            999999999988764  346999999999999999999999   789999999999999999999999999999876433


Q ss_pred             CCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccc-------------
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQ-------------  779 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~-------------  779 (833)
                      ..  ......||+.|+|||++.+. .++.++||||+||++|||++|+.||.+...............             
T Consensus       178 ~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (331)
T 4aaa_A          178 GE--VYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKN  255 (331)
T ss_dssp             --------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHC
T ss_pred             cc--ccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhc
Confidence            22  22456799999999998765 689999999999999999999999986554332221111000             


Q ss_pred             ccccccccccccCCch---hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          780 DKLDHILDFNVSRTSL---AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       780 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ........+.......   .....+.++.+++.+||+.||++|||++|+++|
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h  307 (331)
T 4aaa_A          256 PVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHH  307 (331)
T ss_dssp             GGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             cccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence            0000010111110000   011235678899999999999999999999875

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=3.9e-41  Score=354.31  Aligned_cols=250  Identities=18%  Similarity=0.234  Sum_probs=196.4

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +.|...+.||+|+||.||+|+.. +|+.||||++.. .........+.+.+|++++++++||||+++++++..++..++|
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   89 (276)
T 2h6d_A           11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNR-QKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV   89 (276)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEH-HHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEecc-ccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence            35777889999999999999975 799999999942 2222334567899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++..  ...+++..+..++.|+++||+|||   +.+|+||||||+||+++.++.+|++|||++......
T Consensus        90 ~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~  164 (276)
T 2h6d_A           90 MEYVSGGELFDYICK--HGRVEEMEARRLFQQILSAVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG  164 (276)
T ss_dssp             EECCCSCBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHH---HHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC-
T ss_pred             EeccCCCcHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChhhEEECCCCCEEEeecccccccCCC
Confidence            999999999999976  346899999999999999999999   778999999999999999999999999999876433


Q ss_pred             CCCCccccccccccccccccccCCcc-cccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRV-TMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      .   ......||+.|+|||++.+..+ +.++|||||||++|||++|+.||...... ............        .+.
T Consensus       165 ~---~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~-~~~~~~~~~~~~--------~~~  232 (276)
T 2h6d_A          165 E---FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVP-TLFKKIRGGVFY--------IPE  232 (276)
T ss_dssp             ---------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHCCCC--------CCT
T ss_pred             c---ceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHH-HHHHHhhcCccc--------Cch
Confidence            2   1234679999999999987765 68999999999999999999999754322 211111111000        000


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                            ....++.+++.+||+.||++|||+.|++++
T Consensus       233 ------~~~~~l~~li~~~l~~~p~~Rps~~~~l~h  262 (276)
T 2h6d_A          233 ------YLNRSVATLLMHMLQVDPLKRATIKDIREH  262 (276)
T ss_dssp             ------TSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             ------hcCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence                  123467789999999999999999999986

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=1.8e-41  Score=395.77  Aligned_cols=250  Identities=18%  Similarity=0.216  Sum_probs=197.3

Q ss_pred             cccccCcccEEEEEEc---CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeC
Q 003296          561 NVELKTRFSTYYKAVM---PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYA  637 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~---~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~  637 (833)
                      +.||+|+||.||+|.+   .+++.||||+++..  .......++|.+|+++|++++|||||+++++|.. +..++|||||
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~--~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~  451 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNE--ANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMA  451 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGG--GGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECC
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccc--cCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEcc
Confidence            4799999999999965   35688999999532  1222345789999999999999999999999964 5689999999


Q ss_pred             CCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCC-
Q 003296          638 PKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST-  716 (833)
Q Consensus       638 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~-  716 (833)
                      ++|+|.++++.  ...+++.++..|+.||+.||+|||   +.+||||||||+|||++.++.+||+|||+++........ 
T Consensus       452 ~~g~L~~~l~~--~~~l~~~~~~~i~~qi~~~L~yLH---~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~  526 (635)
T 4fl3_A          452 ELGPLNKYLQQ--NRHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYY  526 (635)
T ss_dssp             TTEEHHHHHHH--CTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-----
T ss_pred             CCCCHHHHHhh--CCCCCHHHHHHHHHHHHHHHHHHH---HCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCcccc
Confidence            99999999986  456899999999999999999999   788999999999999999999999999999876433221 


Q ss_pred             CccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCCch
Q 003296          717 GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSL  795 (833)
Q Consensus       717 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  795 (833)
                      .......||+.|+|||++.+..++.++|||||||++|||+| |+.||.+..... ... ........      ...    
T Consensus       527 ~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~-~~~-~i~~~~~~------~~p----  594 (635)
T 4fl3_A          527 KAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE-VTA-MLEKGERM------GCP----  594 (635)
T ss_dssp             --------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH-HHH-HHHTTCCC------CCC----
T ss_pred             ccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH-HHH-HHHcCCCC------CCC----
Confidence            12234567899999999998899999999999999999998 999997644322 111 11111110      001    


Q ss_pred             hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          796 AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       796 ~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                        ...+.++.+++.+||+.||++|||+.||++.|+++
T Consensus       595 --~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~  629 (635)
T 4fl3_A          595 --AGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY  629 (635)
T ss_dssp             --TTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred             --CCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence              12345788999999999999999999999999864

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=5.2e-42  Score=393.95  Aligned_cols=254  Identities=21%  Similarity=0.275  Sum_probs=206.2

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +.|+..+.||+|+||.||+|.+.++..||||+++...     ...++|.+|+++|++++|||||+++++|.+ +..|+||
T Consensus       267 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~  340 (535)
T 2h8h_A          267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-----MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVT  340 (535)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS-----SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEE
T ss_pred             hhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC-----CCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEee
Confidence            4577788999999999999999888889999995221     235789999999999999999999999876 7789999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      |||++|+|.++++......+++.++..|+.|+++||+|||   +.+||||||||+|||+++++.+||+|||+++......
T Consensus       341 e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~  417 (535)
T 2h8h_A          341 EYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE  417 (535)
T ss_dssp             CCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHH
T ss_pred             ehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCc
Confidence            9999999999997533346899999999999999999999   7889999999999999999999999999998654221


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      .. ......+|..|+|||++.+..++.++|||||||++|||+| |+.||.+.... +.... .......      ...  
T Consensus       418 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~-~~~~~-i~~~~~~------~~~--  486 (535)
T 2h8h_A          418 YT-ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR-EVLDQ-VERGYRM------PCP--  486 (535)
T ss_dssp             HH-TTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHH-HHHHH-HHTTCCC------CCC--
T ss_pred             ee-cccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH-HHHHH-HHcCCCC------CCC--
Confidence            11 1123457889999999988899999999999999999999 99999754332 21111 1111110      000  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                          ...+.++.+++.+||+.||++|||++||+++|+++
T Consensus       487 ----~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~  521 (535)
T 2h8h_A          487 ----PECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDY  521 (535)
T ss_dssp             ----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred             ----CCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence                12244678999999999999999999999999875

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=4.1e-41  Score=367.18  Aligned_cols=267  Identities=17%  Similarity=0.233  Sum_probs=203.3

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC------
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS------  627 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~------  627 (833)
                      +.|+..+.||+|+||.||+|+. .+|+.||||++....  ........+.+|++++++++|||||++++++...      
T Consensus        17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   94 (351)
T 3mi9_A           17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMEN--EKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNR   94 (351)
T ss_dssp             GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSS--CSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC------
T ss_pred             cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEeccc--ccccchHHHHHHHHHHHhccCCCcccHhheeecccccccc
Confidence            4688889999999999999997 589999999984322  2233456789999999999999999999999873      


Q ss_pred             --CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccce
Q 003296          628 --DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIE  705 (833)
Q Consensus       628 --~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfg  705 (833)
                        +..|+||||+++ +|.+.+... ...+++.++..++.|++.||+|||   +.+|+||||||+|||++.++.+||+|||
T Consensus        95 ~~~~~~lv~e~~~~-~l~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg  169 (351)
T 3mi9_A           95 CKGSIYLVFDFCEH-DLAGLLSNV-LVKFTLSEIKRVMQMLLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADFG  169 (351)
T ss_dssp             --CEEEEEEECCSE-EHHHHHHCT-TSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCT
T ss_pred             CCceEEEEEeccCC-CHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCHHHEEEcCCCCEEEccch
Confidence              468999999975 888887653 345999999999999999999999   7899999999999999999999999999


Q ss_pred             eeeeeCCCCC--CCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccc
Q 003296          706 LCKVIDPSKS--TGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL  782 (833)
Q Consensus       706 l~~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~  782 (833)
                      +++.......  ........||+.|+|||++.+ ..++.++|||||||++|||+||+.||.+..................
T Consensus       170 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~  249 (351)
T 3mi9_A          170 LARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSIT  249 (351)
T ss_dssp             TCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCC
T ss_pred             hcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCC
Confidence            9987653221  112345689999999998876 4589999999999999999999999986554332221111110000


Q ss_pred             ccc---cc-ccc-------cCCchhHHH------HHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          783 DHI---LD-FNV-------SRTSLAVRS------QMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       783 ~~~---~~-~~~-------~~~~~~~~~------~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ...   .+ ...       .........      ...++.+++.+||+.||++|||++|+++|
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  312 (351)
T 3mi9_A          250 PEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH  312 (351)
T ss_dssp             TTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCC
Confidence            000   00 000       000000011      13468899999999999999999999875

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=3.6e-41  Score=358.41  Aligned_cols=260  Identities=13%  Similarity=0.137  Sum_probs=201.6

Q ss_pred             HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEE-ecCCc
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYV-LASDS  629 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~-~~~~~  629 (833)
                      ...+.|+..+.||+|+||.||+|+. .+|+.||||++....      ..+.+.+|++++++++|++++..++++ ...+.
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~   79 (296)
T 4hgt_A            6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT------KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDY   79 (296)
T ss_dssp             -----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---------CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTE
T ss_pred             ccCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc------cchHHHHHHHHHHHhcCCCCCCeeeeecCCCCc
Confidence            4567899999999999999999996 689999999874221      234689999999999999988887776 45677


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee---CCCCCceecccee
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL---KSLKEPQIGDIEL  706 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill---~~~~~~ki~dfgl  706 (833)
                      .++||||+ +|+|.+++... ...+++.++..++.|++.||+|||   +.+|+||||||+||++   ++++.+||+|||+
T Consensus        80 ~~lv~e~~-~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~  154 (296)
T 4hgt_A           80 NVMVMELL-GPSLEDLFNFC-SRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGL  154 (296)
T ss_dssp             EEEEEECC-CCBHHHHHHHT-TSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECCGGGTTCEEECCCTT
T ss_pred             eEEEEEcc-CCCHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeeeeccCCCCeEEEecCcc
Confidence            89999999 99999999853 346999999999999999999999   7889999999999999   7889999999999


Q ss_pred             eeeeCCCCCCC-----ccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccH--HHHHHHhhccc
Q 003296          707 CKVIDPSKSTG-----SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNEL--AKWVLRNSAQQ  779 (833)
Q Consensus       707 ~~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~--~~~~~~~~~~~  779 (833)
                      ++.........     ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+....  .......    
T Consensus       155 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~----  230 (296)
T 4hgt_A          155 AKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERI----  230 (296)
T ss_dssp             CEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHH----
T ss_pred             ceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhh----
Confidence            98775433211     123568999999999999989999999999999999999999999743211  0000000    


Q ss_pred             ccccccccccccCCc-hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          780 DKLDHILDFNVSRTS-LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       780 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                            ......... ......+.++.+++.+||+.||++|||++||++.|+++
T Consensus       231 ------~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~  278 (296)
T 4hgt_A          231 ------SEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNL  278 (296)
T ss_dssp             ------HHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHH
T ss_pred             ------hcccccchhhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence                  000000000 00011245788999999999999999999999999874

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=3.4e-42  Score=379.21  Aligned_cols=244  Identities=14%  Similarity=0.141  Sum_probs=190.2

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHH---HHHhcCCCCCcccce-------EE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKEL---EVLGKLSNSNVMTPL-------AY  623 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~---~~l~~l~H~niv~~~-------~~  623 (833)
                      +.|...+.||+|+||.||+|+. .+|+.||||++... ........+.|.+|+   +++++++|||||+++       ++
T Consensus        73 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~-~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~  151 (377)
T 3byv_A           73 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFT-ERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  151 (377)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEEC-C-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred             ceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeec-cccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence            4567789999999999999997 57999999999522 122223457899999   566666899999998       66


Q ss_pred             EecCC-----------------ceEEEEeeCCCCChhhhhhcCC-----CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCe
Q 003296          624 VLASD-----------------SAYLFYEYAPKGTLFDVLHGCL-----ENALDWASRYSIAVGVAQGLAFLHGFTSNPI  681 (833)
Q Consensus       624 ~~~~~-----------------~~~lv~ey~~~g~L~~~l~~~~-----~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~i  681 (833)
                      +..++                 ..|+||||+ +|+|.+++....     ...++|..+..|+.|+++||+|||   +.+|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~i  227 (377)
T 3byv_A          152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGL  227 (377)
T ss_dssp             EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHH---HTTE
T ss_pred             hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHH---hCCe
Confidence            66553                 289999999 689999998521     113457889999999999999999   7789


Q ss_pred             eecCCCccceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCC-----------cccccCcchhhHH
Q 003296          682 LLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTM-----------RVTMAGNVYSFGV  750 (833)
Q Consensus       682 iHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~Dv~S~Gv  750 (833)
                      +||||||+|||++.++.+||+|||+++....     .....+| +.|+|||++.+.           .++.++|||||||
T Consensus       228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~-----~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~  301 (377)
T 3byv_A          228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA-----RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGL  301 (377)
T ss_dssp             ECSCCCGGGEEECTTCCEEECCGGGCEETTC-----EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHH
T ss_pred             ecCCCCHHHEEEcCCCCEEEEechhheecCC-----cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHH
Confidence            9999999999999999999999999986432     2245678 999999999877           8999999999999


Q ss_pred             HHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          751 ILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       751 vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ++|||+||+.||.+....           .....+... ..       ..+.++.+++.+||+.||++|||+.|++++
T Consensus       302 il~elltg~~Pf~~~~~~-----------~~~~~~~~~-~~-------~~~~~~~~li~~~L~~dp~~Rpt~~e~l~h  360 (377)
T 3byv_A          302 VIYWIWCADLPITKDAAL-----------GGSEWIFRS-CK-------NIPQPVRALLEGFLRYPKEDRLLPLQAMET  360 (377)
T ss_dssp             HHHHHHHSSCCC-----------------CCSGGGGSS-CC-------CCCHHHHHHHHHHTCSSGGGCCCHHHHHTS
T ss_pred             HHHHHHHCCCCCcccccc-----------cchhhhhhh-cc-------CCCHHHHHHHHHHcCCCchhCCCHHHHhhC
Confidence            999999999999643211           111111110 01       123467899999999999999999999864

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=1.5e-41  Score=371.56  Aligned_cols=260  Identities=17%  Similarity=0.198  Sum_probs=184.7

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC------
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS------  627 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~------  627 (833)
                      +.|...+.||+|+||.||+|.. .+|+.||||++....  ......+.+.+|++++++++|||||++++++...      
T Consensus        29 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~  106 (367)
T 2fst_X           29 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF--QSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF  106 (367)
T ss_dssp             TTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTT--SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred             CceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccc--cCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccC
Confidence            4678889999999999999996 579999999994321  1122356789999999999999999999999764      


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                      ...|+||||+ +++|.++++.   ..+++..+..++.|+++||+|||   +.+|+||||||+||+++.++.+||+|||++
T Consensus       107 ~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kL~DFG~a  179 (367)
T 2fst_X          107 NDVYLVTHLM-GADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLA  179 (367)
T ss_dssp             CCCEEEEECC-CEECC--------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECC----
T ss_pred             CeEEEEeccc-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHhhEEECCCCCEEEeecccc
Confidence            5689999999 6899999874   46999999999999999999999   789999999999999999999999999999


Q ss_pred             eeeCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccc----
Q 003296          708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL----  782 (833)
Q Consensus       708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~----  782 (833)
                      +.....     ....+||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+..............+...    
T Consensus       180 ~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~  254 (367)
T 2fst_X          180 RHTADE-----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELL  254 (367)
T ss_dssp             ----------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHH
T ss_pred             cccccc-----CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHH
Confidence            865422     245689999999999876 6789999999999999999999999986654433221111100000    


Q ss_pred             cccccc----------cccCCc--hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          783 DHILDF----------NVSRTS--LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       783 ~~~~~~----------~~~~~~--~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ..+...          ......  .........+.+++.+||+.||++|||+.|+++|
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~h  312 (367)
T 2fst_X          255 KKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH  312 (367)
T ss_dssp             TTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             HHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcC
Confidence            000000          000000  0001124568899999999999999999999875

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.3e-41  Score=375.49  Aligned_cols=261  Identities=16%  Similarity=0.169  Sum_probs=198.2

Q ss_pred             HHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC----
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS----  627 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~----  627 (833)
                      ....|...+.||+|+||.||+|.. .+|+.||||++...        .+.+.+|+++|++++|||||+++++|...    
T Consensus         5 ~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~--------~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~   76 (383)
T 3eb0_A            5 SSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQD--------PRYKNRELDIMKVLDHVNIIKLVDYFYTTGDEE   76 (383)
T ss_dssp             -CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECC--------TTSCCHHHHHHTTCCCTTBCCEEEEEEEC----
T ss_pred             ccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecC--------cchHHHHHHHHHHcCCCCccchhheeeecCccc
Confidence            445788899999999999999996 58999999998422        12334799999999999999999999543    


Q ss_pred             ----------------------------------CceEEEEeeCCCCChhhhhhc--CCCCCCCHHHHHHHHHHHHHHHH
Q 003296          628 ----------------------------------DSAYLFYEYAPKGTLFDVLHG--CLENALDWASRYSIAVGVAQGLA  671 (833)
Q Consensus       628 ----------------------------------~~~~lv~ey~~~g~L~~~l~~--~~~~~l~~~~~~~i~~~i~~~l~  671 (833)
                                                        ...++|||||+ |+|.+.+..  .....+++..+..++.|+++||+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~  155 (383)
T 3eb0_A           77 PKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVG  155 (383)
T ss_dssp             ---------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence                                              33889999998 588887763  22457999999999999999999


Q ss_pred             hhhcCCCCCeeecCCCccceeeC-CCCCceeccceeeeeeCCCCCCCccccccccccccccccccCC-cccccCcchhhH
Q 003296          672 FLHGFTSNPILLLDLSTRNIFLK-SLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFG  749 (833)
Q Consensus       672 ylH~~~~~~iiHrdlk~~Nill~-~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~G  749 (833)
                      |||   +.+|+||||||+||+++ .++.+||+|||+|+.......   .....||+.|+|||++.+. .++.++||||+|
T Consensus       156 ~LH---~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG  229 (383)
T 3eb0_A          156 FIH---SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEP---SVAYICSRFYRAPELMLGATEYTPSIDLWSIG  229 (383)
T ss_dssp             HHH---TTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSC---CCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHH
T ss_pred             HHH---HCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCC---CcCcccCCCccCHHHhcCCCCCCcchhhhhHH
Confidence            999   78999999999999998 688999999999997654432   2456789999999988765 489999999999


Q ss_pred             HHHHHHHhCCCcccCCccHHHHHHHhhccccc-----------ccccccccccCCch---hHHHHHHHHHHHHHhccCCC
Q 003296          750 VILLELLTGKTAVNQGNELAKWVLRNSAQQDK-----------LDHILDFNVSRTSL---AVRSQMLTVLKVAVACVSVS  815 (833)
Q Consensus       750 vvl~elltg~~p~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~cl~~d  815 (833)
                      |++|||++|+.||.+......+.......+..           .....-+.......   .....+.++.+++.+||+.|
T Consensus       230 ~il~ell~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d  309 (383)
T 3eb0_A          230 CVFGELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYE  309 (383)
T ss_dssp             HHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSS
T ss_pred             HHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCC
Confidence            99999999999998765544333221111000           00000000000000   00113456889999999999


Q ss_pred             CCCCCCHHHHHHH
Q 003296          816 PEARPKMKSVLRM  828 (833)
Q Consensus       816 P~~Rps~~evl~~  828 (833)
                      |++|||+.|+++|
T Consensus       310 P~~R~t~~e~l~h  322 (383)
T 3eb0_A          310 PDLRINPYEAMAH  322 (383)
T ss_dssp             GGGSCCHHHHHTS
T ss_pred             hhhCCCHHHHhcC
Confidence            9999999999865

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=1.8e-41  Score=359.22  Aligned_cols=249  Identities=16%  Similarity=0.230  Sum_probs=200.8

Q ss_pred             HHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCc
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDS  629 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~  629 (833)
                      ...+.|+..+.||+|+||.||+|+.. +|+.||||++.....  ......++.+|+.++.++ +|||||++++++.+++.
T Consensus         8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~   85 (289)
T 1x8b_A            8 RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLA--GSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDH   85 (289)
T ss_dssp             HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCT--TSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTE
T ss_pred             cccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEeccccc--ccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCe
Confidence            45678999999999999999999975 899999999853211  122356789999999999 99999999999999999


Q ss_pred             eEEEEeeCCCCChhhhhhcCC--CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC-----------
Q 003296          630 AYLFYEYAPKGTLFDVLHGCL--ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL-----------  696 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~-----------  696 (833)
                      .++||||+++|+|.+++....  ...+++.++..++.|+++||+|||   +.+|+||||||+||+++.+           
T Consensus        86 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~  162 (289)
T 1x8b_A           86 MLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIH---SMSLVHMDIKPSNIFISRTSIPNAASEEGD  162 (289)
T ss_dssp             EEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEC-------------
T ss_pred             EEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeecCCCHHHEEEcCCCCCcccccccc
Confidence            999999999999999997532  246899999999999999999999   7899999999999999844           


Q ss_pred             --------CCceeccceeeeeeCCCCCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCcc
Q 003296          697 --------KEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNE  767 (833)
Q Consensus       697 --------~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~  767 (833)
                              ..+|++|||.++......      ...||+.|+|||++.+. .++.++|||||||++|||++|++|+.....
T Consensus       163 ~~~~~~~~~~~kl~Dfg~~~~~~~~~------~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~  236 (289)
T 1x8b_A          163 EDDWASNKVMFKIGDLGHVTRISSPQ------VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGDQ  236 (289)
T ss_dssp             -------CCCEEECCCTTCEETTCSC------CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSHH
T ss_pred             cccccCCceEEEEcccccccccCCcc------ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchhH
Confidence                    478999999998764322      34699999999998765 567899999999999999999988754332


Q ss_pred             HHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          768 LAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .....   .   ....     ....      ..+.++.+++.+||+.||++|||+.|+++|
T Consensus       237 ~~~~~---~---~~~~-----~~~~------~~~~~~~~li~~~l~~dp~~Rps~~~ll~h  280 (289)
T 1x8b_A          237 WHEIR---Q---GRLP-----RIPQ------VLSQEFTELLKVMIHPDPERRPSAMALVKH  280 (289)
T ss_dssp             HHHHH---T---TCCC-----CCSS------CCCHHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred             HHHHH---c---CCCC-----CCCc------ccCHHHHHHHHHHhCCCcccCCCHHHHhhC
Confidence            21111   0   1110     1111      123467899999999999999999999875

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=8.1e-41  Score=361.64  Aligned_cols=256  Identities=15%  Similarity=0.171  Sum_probs=201.1

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEec--CCce
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLA--SDSA  630 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~--~~~~  630 (833)
                      ++|+..+.||+|+||.||+|+. .+|+.||||+++.       ...+.+.+|++++++++ ||||+++++++..  ....
T Consensus        36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~-------~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~  108 (330)
T 3nsz_A           36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP-------VKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTP  108 (330)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS-------CCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCE
T ss_pred             CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecc-------cchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCce
Confidence            5688889999999999999986 5899999999942       23467999999999997 9999999999987  5678


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC-Cceeccceeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK-EPQIGDIELCKV  709 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~-~~ki~dfgl~~~  709 (833)
                      ++||||+++|+|.+++..     +++.++..++.|++.||+|||   +.+|+||||||+|||++.++ .+||+|||+++.
T Consensus       109 ~lv~e~~~~~~l~~~~~~-----~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~  180 (330)
T 3nsz_A          109 ALVFEHVNNTDFKQLYQT-----LTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEF  180 (330)
T ss_dssp             EEEEECCCCCCHHHHGGG-----CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred             EEEEeccCchhHHHHHHh-----CCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceE
Confidence            999999999999999864     889999999999999999999   78899999999999999776 899999999987


Q ss_pred             eCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccc--cccccc-
Q 003296          710 IDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQ--DKLDHI-  785 (833)
Q Consensus       710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~--~~~~~~-  785 (833)
                      ......   .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||..+..............  ...... 
T Consensus       181 ~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~  257 (330)
T 3nsz_A          181 YHPGQE---YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYI  257 (330)
T ss_dssp             CCTTCC---CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cCCCCc---cccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHH
Confidence            654332   245689999999999876 6689999999999999999999999965443322211110000  000000 


Q ss_pred             ------cccc--------cc------CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          786 ------LDFN--------VS------RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       786 ------~~~~--------~~------~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                            .++.        ..      ...........++.+++.+||+.||++|||++|+++|
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~h  320 (330)
T 3nsz_A          258 DKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEH  320 (330)
T ss_dssp             HHTTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             HHhccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence                  0000        00      0000011235678899999999999999999999975

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=8.6e-41  Score=358.73  Aligned_cols=254  Identities=17%  Similarity=0.272  Sum_probs=202.0

Q ss_pred             HHHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296          551 KAMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS  629 (833)
Q Consensus       551 ~~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~  629 (833)
                      +...+.|+..+.||+|+||.||+|... +|+.||||++...      ...+.+.+|++++++++||||+++++++...+.
T Consensus        25 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~------~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   98 (314)
T 3com_A           25 KQPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVE------SDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTD   98 (314)
T ss_dssp             -----CEEEEEECC----CEEEEEEETTTCCEEEEEEEETT------SCCHHHHHHHHHHHTCCCTTBCCEEEEEEETTE
T ss_pred             hcchhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCch------HHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCE
Confidence            355677889999999999999999975 6999999999422      235789999999999999999999999999999


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                      .++||||+++|+|.+++... ...+++.++..++.|++.||.|||   ..+|+||||||+||+++.++.+||+|||++..
T Consensus        99 ~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~  174 (314)
T 3com_A           99 LWIVMEYCGAGSVSDIIRLR-NKTLTEDEIATILQSTLKGLEYLH---FMRKIHRDIKAGNILLNTEGHAKLADFGVAGQ  174 (314)
T ss_dssp             EEEEEECCTTEEHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             EEEEeecCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCcCHHHEEECCCCCEEEeecccchh
Confidence            99999999999999999732 346899999999999999999999   78899999999999999999999999999987


Q ss_pred             eCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      ......  ......||+.|+|||++.+..++.++|||||||++|||++|+.||..................        .
T Consensus       175 ~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~--------~  244 (314)
T 3com_A          175 LTDTMA--KRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPP--------T  244 (314)
T ss_dssp             CBTTBS--CBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCC--------C
T ss_pred             hhhhcc--ccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCc--------c
Confidence            653321  224567999999999999889999999999999999999999999765443322211111100        0


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ...    ....+.++.+++.+||+.||++|||+.|++++
T Consensus       245 ~~~----~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~~  279 (314)
T 3com_A          245 FRK----PELWSDNFTDFVKQCLVKSPEQRATATQLLQH  279 (314)
T ss_dssp             CSS----GGGSCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred             cCC----cccCCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence            000    11123467899999999999999999999864

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=6.9e-41  Score=375.07  Aligned_cols=200  Identities=21%  Similarity=0.224  Sum_probs=166.0

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC-----C
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS-----D  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~-----~  628 (833)
                      +.|...+.||+|+||.||+|+. .+|+.||||++....  ......+.+.+|+++|++++|||||++++++...     +
T Consensus        26 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  103 (432)
T 3n9x_A           26 DNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMF--EDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFD  103 (432)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTT--TSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred             CCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchh--cChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCC
Confidence            5688889999999999999997 478999999995221  1222356899999999999999999999999876     5


Q ss_pred             ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeee
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK  708 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~  708 (833)
                      ..|+||||++ |+|.++++.  ...+++..+..++.|+++||+|||   +.+|+||||||+|||++.++.+||+|||+|+
T Consensus       104 ~~~lv~e~~~-~~L~~~~~~--~~~l~~~~~~~i~~qil~aL~~LH---~~givHrDlkp~NILl~~~~~~kL~DFGla~  177 (432)
T 3n9x_A          104 ELYIVLEIAD-SDLKKLFKT--PIFLTEEHIKTILYNLLLGENFIH---ESGIIHRDLKPANCLLNQDCSVKVCDFGLAR  177 (432)
T ss_dssp             CEEEEEECCS-EEHHHHHHS--SCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             eEEEEEecCC-cCHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHeEECCCCCEEEccCCCcc
Confidence            6899999996 599999986  456999999999999999999999   7789999999999999999999999999998


Q ss_pred             eeCCCCCC--------------------Cccccccccccccccccc-cCCcccccCcchhhHHHHHHHHhCCCcc
Q 003296          709 VIDPSKST--------------------GSLSTVAGSVGYIPPEYA-YTMRVTMAGNVYSFGVILLELLTGKTAV  762 (833)
Q Consensus       709 ~~~~~~~~--------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~S~Gvvl~elltg~~p~  762 (833)
                      ........                    ......+||+.|+|||++ ....|+.++||||+||++|||++|..||
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~  252 (432)
T 3n9x_A          178 TINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSH  252 (432)
T ss_dssp             EC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTT
T ss_pred             cccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccc
Confidence            76533211                    123567899999999986 4566999999999999999999854444

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=1.8e-41  Score=364.50  Aligned_cols=256  Identities=18%  Similarity=0.256  Sum_probs=200.7

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec----CCc
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA----SDS  629 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~----~~~  629 (833)
                      +.|+..+.||+|+||.||+|.. .+|+.||||++....    ....+.+.+|++++++++|||||++++++..    ...
T Consensus        29 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  104 (317)
T 2buj_A           29 KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHE----QQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHE  104 (317)
T ss_dssp             EEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESS----HHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEE
T ss_pred             eEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCC----HHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCce
Confidence            4688889999999999999997 589999999984321    1235679999999999999999999999973    347


Q ss_pred             eEEEEeeCCCCChhhhhhcC--CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          630 AYLFYEYAPKGTLFDVLHGC--LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                      .++||||+++|+|.+++...  ....+++.++..++.|+++||+|||   +.+|+||||||+||+++.++.+|++|||++
T Consensus       105 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~  181 (317)
T 2buj_A          105 AWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIH---AKGYAHRDLKPTNILLGDEGQPVLMDLGSM  181 (317)
T ss_dssp             EEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCSSC
T ss_pred             eEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEcCCCCEEEEecCcc
Confidence            89999999999999998752  2356999999999999999999999   779999999999999999999999999998


Q ss_pred             eeeCCCCCCC-------ccccccccccccccccccCCc---ccccCcchhhHHHHHHHHhCCCcccC----CccHHHHHH
Q 003296          708 KVIDPSKSTG-------SLSTVAGSVGYIPPEYAYTMR---VTMAGNVYSFGVILLELLTGKTAVNQ----GNELAKWVL  773 (833)
Q Consensus       708 ~~~~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~S~Gvvl~elltg~~p~~~----~~~~~~~~~  773 (833)
                      +.........       ......||+.|+|||++.+..   ++.++|||||||++|||++|+.||..    .........
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~  261 (317)
T 2buj_A          182 NQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQ  261 (317)
T ss_dssp             EESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHH
T ss_pred             hhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhh
Confidence            7653211100       012346899999999987543   78999999999999999999999952    111111110


Q ss_pred             HhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296          774 RNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR  833 (833)
Q Consensus       774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r  833 (833)
                          ....        ...    ....+.++.+++.+||+.||++|||+.|++++|++++
T Consensus       262 ----~~~~--------~~~----~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~  305 (317)
T 2buj_A          262 ----NQLS--------IPQ----SPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQ  305 (317)
T ss_dssp             ----CC----------CCC----CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTC
T ss_pred             ----ccCC--------CCc----cccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcC
Confidence                0000        000    0122346889999999999999999999999998864

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=1.3e-41  Score=363.17  Aligned_cols=262  Identities=20%  Similarity=0.282  Sum_probs=186.7

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +.|+..+.||+|+||.||+|.. .+|+.||||++....   .....+++.+|++++++++||||+++++++..++..++|
T Consensus        15 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   91 (303)
T 2vwi_A           15 DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEK---CQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLV   91 (303)
T ss_dssp             CCCEEEEECC---CCCEEEEEC----CEEEEECCC-------------------CCCCCCCTTBCCEEEEEESSSCEEEE
T ss_pred             hhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhh---cchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEE
Confidence            4577789999999999999997 478999999984221   123356789999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcC------CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          634 YEYAPKGTLFDVLHGC------LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~------~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                      |||+++|+|.+++...      ....+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||++
T Consensus        92 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~  168 (303)
T 2vwi_A           92 MKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLH---KNGQIHRDVKAGNILLGEDGSVQIADFGVS  168 (303)
T ss_dssp             EECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEECCCHHH
T ss_pred             ehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCCChhhEEEcCCCCEEEEeccch
Confidence            9999999999998731      2346899999999999999999999   778999999999999999999999999998


Q ss_pred             eeeCCCCC---CCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccc
Q 003296          708 KVIDPSKS---TGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLD  783 (833)
Q Consensus       708 ~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~  783 (833)
                      +.......   ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||.....................
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~  248 (303)
T 2vwi_A          169 AFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLE  248 (303)
T ss_dssp             HHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHTSSCCCTT
T ss_pred             heeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHHHhccCCCccc
Confidence            76543221   111234679999999998865 46899999999999999999999999865443332222111111111


Q ss_pred             c-cccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          784 H-ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       784 ~-~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      . ..+....      ...+.++.+++.+||+.||++|||+.|++++
T Consensus       249 ~~~~~~~~~------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h  288 (303)
T 2vwi_A          249 TGVQDKEML------KKYGKSFRKMISLCLQKDPEKRPTAAELLRH  288 (303)
T ss_dssp             C-----CCC------CCCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             cccccchhh------hhhhHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence            1 0111111      1123467899999999999999999999874

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.5e-41  Score=364.84  Aligned_cols=267  Identities=22%  Similarity=0.291  Sum_probs=205.4

Q ss_pred             HhcCCccccccCcccEEEEEEc-----CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC-
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD-  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~-  628 (833)
                      ..|+..+.||+|+||.||+|..     .+|+.||||++....    ....+.|.+|++++++++|||||++++++...+ 
T Consensus        41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~  116 (326)
T 2w1i_A           41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST----EEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGR  116 (326)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCC----SHHHHHHHHHHHHHHTCCCTTBCCEEEEECC---
T ss_pred             HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCC----HHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCC
Confidence            4577889999999999999983     478999999995321    223467999999999999999999999987654 


Q ss_pred             -ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          629 -SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       629 -~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                       ..++||||+++|+|.+++... ...+++.++..++.|+++||+|||   +.+|+||||||+||+++.++.+||+|||++
T Consensus       117 ~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~kL~Dfg~~  192 (326)
T 2w1i_A          117 RNLKLIMEYLPYGSLRDYLQKH-KERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLT  192 (326)
T ss_dssp             -CCEEEECCCTTCBHHHHHHHS-TTSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTC
T ss_pred             CceEEEEECCCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCCCcceEEEcCCCcEEEecCcch
Confidence             789999999999999999864 345899999999999999999999   789999999999999999999999999999


Q ss_pred             eeeCCCCCCC-ccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc------
Q 003296          708 KVIDPSKSTG-SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD------  780 (833)
Q Consensus       708 ~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~------  780 (833)
                      +......... ......||..|+|||++.+..++.++|||||||++|||+||+.|+....  ..+.........      
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~--~~~~~~~~~~~~~~~~~~  270 (326)
T 2w1i_A          193 KVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP--AEFMRMIGNDKQGQMIVF  270 (326)
T ss_dssp             EECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHH--HHHHHHHCTTCCTHHHHH
T ss_pred             hhccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCH--HHHHHhhccccchhhhHH
Confidence            8775432211 1123567888999999988889999999999999999999999986321  111100000000      


Q ss_pred             cccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296          781 KLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR  833 (833)
Q Consensus       781 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r  833 (833)
                      .+.+.+.......  .....+.++.+++.+||+.||++|||+.|+++.|+++|
T Consensus       271 ~~~~~~~~~~~~~--~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~  321 (326)
T 2w1i_A          271 HLIELLKNNGRLP--RPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR  321 (326)
T ss_dssp             HHHHHHHTTCCCC--CCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCCC--CCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence            0000000000000  01123457889999999999999999999999999864

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=9.8e-41  Score=355.07  Aligned_cols=258  Identities=13%  Similarity=0.135  Sum_probs=203.5

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEE-ecCCceE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYV-LASDSAY  631 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~-~~~~~~~  631 (833)
                      .+.|+..+.||+|+||.||+|+. .+|+.||||++...      ...+++.+|++++++++|++++..++++ ...+..+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~------~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~   81 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVK------TKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNV   81 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESC------SSCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEE
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCC------cchhHHHHHHHHHHHhhcCCCCCccccccCCCCceE
Confidence            35678889999999999999996 68999999998422      1235799999999999999988777766 4567789


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee---CCCCCceeccceeee
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL---KSLKEPQIGDIELCK  708 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill---~~~~~~ki~dfgl~~  708 (833)
                      +||||+ +|+|.+++... ...+++.++..++.|++.||+|||   +.+|+||||||+||++   ++++.+||+|||+++
T Consensus        82 lv~e~~-~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~  156 (296)
T 3uzp_A           82 MVMELL-GPSLEDLFNFC-SRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAK  156 (296)
T ss_dssp             EEEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECCGGGTTCEEECCCTTCE
T ss_pred             EEEEec-CCCHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcc
Confidence            999999 89999999743 346999999999999999999999   7899999999999999   488899999999998


Q ss_pred             eeCCCCCCC-----ccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccH--HHHHHHhhccccc
Q 003296          709 VIDPSKSTG-----SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNEL--AKWVLRNSAQQDK  781 (833)
Q Consensus       709 ~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~--~~~~~~~~~~~~~  781 (833)
                      .........     ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+....  .+.....      
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~------  230 (296)
T 3uzp_A          157 KYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERI------  230 (296)
T ss_dssp             ECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHH------
T ss_pred             cccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhh------
Confidence            775433211     124568999999999999989999999999999999999999999743211  0000000      


Q ss_pred             ccccccccccCCc-hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          782 LDHILDFNVSRTS-LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       782 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                          ......... ......+.++.+++.+||+.||++|||++||++.|+++
T Consensus       231 ----~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~  278 (296)
T 3uzp_A          231 ----SEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNL  278 (296)
T ss_dssp             ----HHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHH
T ss_pred             ----cccccCCchHHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHH
Confidence                000000000 00012245788999999999999999999999999875

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=2.1e-41  Score=377.62  Aligned_cols=258  Identities=19%  Similarity=0.180  Sum_probs=195.1

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC------C
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS------D  628 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~------~  628 (833)
                      .|+..+.||+|+||.||+|+.. +|+.||||++...        .+.+.+|+++|++++|||||+++++|...      .
T Consensus        55 ~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~--------~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~  126 (420)
T 1j1b_A           55 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD--------KRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEV  126 (420)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC--------TTSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEE
T ss_pred             eEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEeccc--------chhHHHHHHHHHHcCCCCccceeeEEeccCCCCcce
Confidence            4777899999999999999974 7999999998421        12345799999999999999999998642      2


Q ss_pred             ceEEEEeeCCCCChhhhhhc--CCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC-CCceeccce
Q 003296          629 SAYLFYEYAPKGTLFDVLHG--CLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL-KEPQIGDIE  705 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~--~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~-~~~ki~dfg  705 (833)
                      ..++||||+++ ++.+.+..  .....+++..+..++.|+++||+|||   +.+|+||||||+|||++.+ +.+||+|||
T Consensus       127 ~~~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NILl~~~~~~~kl~DFG  202 (420)
T 1j1b_A          127 YLNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFG  202 (420)
T ss_dssp             EEEEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEEETTTTEEEECCCT
T ss_pred             eEEeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChhhEEEeCCCCeEEeccch
Confidence            36799999986 67666542  12456999999999999999999999   7899999999999999965 568999999


Q ss_pred             eeeeeCCCCCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc----
Q 003296          706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD----  780 (833)
Q Consensus       706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~----  780 (833)
                      +++.......   ....+||+.|+|||++.+. .|+.++|||||||++|||++|+.||.+..............+.    
T Consensus       203 ~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~  279 (420)
T 1j1b_A          203 SAKQLVRGEP---NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTRE  279 (420)
T ss_dssp             TCEECCTTCC---CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHH
T ss_pred             hhhhcccCCC---ceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHH
Confidence            9997654332   2356899999999998764 6999999999999999999999999876544333222111000    


Q ss_pred             -------cccccccccccCCchh---HHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          781 -------KLDHILDFNVSRTSLA---VRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       781 -------~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                             ......-+.+......   ......++.+++.+||+.||++|||+.|+++|
T Consensus       280 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~h  337 (420)
T 1j1b_A          280 QIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAH  337 (420)
T ss_dssp             HHHHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             HHHhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCC
Confidence                   0000000111100000   01224578899999999999999999999875

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=5.5e-41  Score=356.82  Aligned_cols=251  Identities=18%  Similarity=0.233  Sum_probs=197.8

Q ss_pred             cCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      |....+||+|+||.||+|.. .+++.||||++....    ....+.+.+|++++++++|||||++++++...+..++|||
T Consensus        24 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   99 (295)
T 2clq_A           24 NGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERD----SRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFME   99 (295)
T ss_dssp             TSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCC----C---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCc----hHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEE
Confidence            34456899999999999996 578999999985321    2345789999999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCC-CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC-CCCceeccceeeeeeCCC
Q 003296          636 YAPKGTLFDVLHGCLE-NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS-LKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~-~~~~ki~dfgl~~~~~~~  713 (833)
                      |+++|+|.+++..... ..+++..+..++.|++.||+|||   +.+|+||||||+||+++. ++.+||+|||+++.....
T Consensus       100 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~  176 (295)
T 2clq_A          100 QVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLH---DNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGI  176 (295)
T ss_dssp             CCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC-
T ss_pred             eCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHH---hCCEEccCCChhhEEEECCCCCEEEeecccccccCCC
Confidence            9999999999986422 35679999999999999999999   779999999999999987 899999999999876432


Q ss_pred             CCCCccccccccccccccccccCCc--ccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMR--VTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      ..  ......||+.|+|||++.+..  ++.++|||||||++|||++|+.||................ .     ..+...
T Consensus       177 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~-~-----~~~~~~  248 (295)
T 2clq_A          177 NP--CTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMF-K-----VHPEIP  248 (295)
T ss_dssp             ------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHH-C-----CCCCCC
T ss_pred             CC--cccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhccc-c-----cccccc
Confidence            21  224567999999999987643  7899999999999999999999997533322111111000 0     001111


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                            ...+.++.+++.+||+.||++|||+.|++++
T Consensus       249 ------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~~  279 (295)
T 2clq_A          249 ------ESMSAEAKAFILKCFEPDPDKRACANDLLVD  279 (295)
T ss_dssp             ------TTSCHHHHHHHHHTTCSSTTTSCCHHHHHTS
T ss_pred             ------ccCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence                  1223467899999999999999999999864

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=1.9e-41  Score=371.19  Aligned_cols=260  Identities=17%  Similarity=0.226  Sum_probs=201.7

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||.||+|... +|+.||+|++....   .....+.+.+|++++++++|||||++++++..++..++|
T Consensus        33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  109 (360)
T 3eqc_A           33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI---KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISIC  109 (360)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCC---CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEE
T ss_pred             ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEecccc---CHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEE
Confidence            46788899999999999999975 79999999985321   122346799999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCC-CeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSN-PILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~-~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      |||+++|+|.++++.  ...+++..+..++.|++.||+|||   .. +|+||||||+||+++.++.+||+|||+++....
T Consensus       110 ~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~~i~~~l~~lh---~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  184 (360)
T 3eqc_A          110 MEHMDGGSLDQVLKK--AGRIPEQILGKVSIAVIKGLTYLR---EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID  184 (360)
T ss_dssp             ECCCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHH
T ss_pred             EECCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH---HhCCEEcCCccHHHEEECCCCCEEEEECCCCccccc
Confidence            999999999999986  346899999999999999999999   54 899999999999999999999999999875532


Q ss_pred             CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHh-hccccc----------
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRN-SAQQDK----------  781 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~-~~~~~~----------  781 (833)
                      ..    .....||+.|+|||++.+..++.++|||||||++|||++|+.||............. ......          
T Consensus       185 ~~----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (360)
T 3eqc_A          185 SM----ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTP  260 (360)
T ss_dssp             HC--------CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC-----------------
T ss_pred             cc----ccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccC
Confidence            21    134679999999999999899999999999999999999999997543221100000 000000          


Q ss_pred             --------------------ccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          782 --------------------LDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       782 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                                          .+.+........  .....+.++.+++.+||+.||++|||++|+++|
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  325 (360)
T 3eqc_A          261 GRPLNKFGMDSRPPMAIFELLDYIVNEPPPKL--PSGVFSLEFQDFVNKCLIKNPAERADLKQLMVH  325 (360)
T ss_dssp             -------------CCCHHHHHHHHHHSCCCCC--CTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             CCcccccccCCCCcccchhhhhHHhccCCCCC--CcccccHHHHHHHHHHhhcChhhCCCHHHHhhC
Confidence                                000000000000  001124578899999999999999999999875

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=3.3e-41  Score=357.58  Aligned_cols=253  Identities=13%  Similarity=0.181  Sum_probs=188.2

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||.||+|.. .+|+.||||++.....  .....+.+.+|...++.++|||||++++++..++..++|
T Consensus         7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv   84 (290)
T 3fme_A            7 DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVN--SQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWIC   84 (290)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---C--HHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEE
T ss_pred             HhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccC--cHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEE
Confidence            5688889999999999999997 5899999999953211  111233455556668889999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcC--CCCCCCHHHHHHHHHHHHHHHHhhhcCCCC-CeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          634 YEYAPKGTLFDVLHGC--LENALDWASRYSIAVGVAQGLAFLHGFTSN-PILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~-~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      |||++ |+|.+++...  ....+++..+..++.|++.||+|||   +. +|+||||||+||+++.++.+||+|||+++..
T Consensus        85 ~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~  160 (290)
T 3fme_A           85 MELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH---SKLSVIHRDVKPSNVLINALGQVKMCDFGISGYL  160 (290)
T ss_dssp             EECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HHSCCCCCCCSGGGCEECTTCCEEBCCC------
T ss_pred             Eehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCCHHHEEECCCCCEEEeecCCcccc
Confidence            99997 5888877531  2457999999999999999999999   65 8999999999999999999999999999876


Q ss_pred             CCCCCCCccccccccccccccccc----cCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc
Q 003296          711 DPSKSTGSLSTVAGSVGYIPPEYA----YTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL  786 (833)
Q Consensus       711 ~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  786 (833)
                      .....   .....||+.|+|||++    .+..++.++||||+||++|||+||+.||..................  ..  
T Consensus       161 ~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~--~~--  233 (290)
T 3fme_A          161 VDDVA---KDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPS--PQ--  233 (290)
T ss_dssp             ------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCC--CC--
T ss_pred             ccccc---ccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhccCC--CC--
Confidence            43322   2345799999999996    4567899999999999999999999999864433322222211110  00  


Q ss_pred             cccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          787 DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       787 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                         ..     ....+.++.+++.+||+.||++|||+.|+++|
T Consensus       234 ---~~-----~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~h  267 (290)
T 3fme_A          234 ---LP-----ADKFSAEFVDFTSQCLKKNSKERPTYPELMQH  267 (290)
T ss_dssp             ---CC-----TTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             ---cc-----cccCCHHHHHHHHHHhhcChhhCcCHHHHHhC
Confidence               00     01223467899999999999999999999874

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=9.5e-42  Score=359.57  Aligned_cols=255  Identities=17%  Similarity=0.254  Sum_probs=201.1

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec--CCceE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA--SDSAY  631 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~--~~~~~  631 (833)
                      ++|+..+.||+|+||.||+|... +|+.||||++.....  .....+.|.+|++++++++|||||++++++..  .+..+
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   83 (279)
T 2w5a_A            6 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSM--TEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLY   83 (279)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEE
T ss_pred             hheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccC--CHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEE
Confidence            46788899999999999999974 799999999953221  12235679999999999999999999998854  56799


Q ss_pred             EEEeeCCCCChhhhhhcCC--CCCCCHHHHHHHHHHHHHHHHhhhcCCCCC-----eeecCCCccceeeCCCCCceeccc
Q 003296          632 LFYEYAPKGTLFDVLHGCL--ENALDWASRYSIAVGVAQGLAFLHGFTSNP-----ILLLDLSTRNIFLKSLKEPQIGDI  704 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~-----iiHrdlk~~Nill~~~~~~ki~df  704 (833)
                      +||||+++|+|.+++....  ...+++..+..++.|++.||+|||   ..+     |+||||||+||+++.++.+||+||
T Consensus        84 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~df  160 (279)
T 2w5a_A           84 IVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECH---RRSDGGHTVLHRDLKPANVFLDGKQNVKLGDF  160 (279)
T ss_dssp             EEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HHC------CCCCCSGGGEEECSSSCEEECCC
T ss_pred             EEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHh---cccCCCCeeEEeccchhhEEEcCCCCEEEecC
Confidence            9999999999999997532  235899999999999999999999   555     999999999999999999999999


Q ss_pred             eeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccc
Q 003296          705 ELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDH  784 (833)
Q Consensus       705 gl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~  784 (833)
                      |+++......  .......||+.|+|||++.+..++.++|||||||++|||++|+.||...... ...... .. .....
T Consensus       161 g~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-~~~~~i-~~-~~~~~  235 (279)
T 2w5a_A          161 GLARILNHDT--SFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK-ELAGKI-RE-GKFRR  235 (279)
T ss_dssp             CHHHHC---C--HHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHH-HH-TCCCC
T ss_pred             chheeecccc--ccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHH-HHHHHH-hh-ccccc
Confidence            9998654322  1123467999999999998888999999999999999999999999754322 111111 11 11100


Q ss_pred             cccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 003296          785 ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLL  830 (833)
Q Consensus       785 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~  830 (833)
                           +.      ...+.++.+++.+||+.||++|||+.||++++.
T Consensus       236 -----~~------~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~  270 (279)
T 2w5a_A          236 -----IP------YRYSDELNEIITRMLNLKDYHRPSVEEILENPL  270 (279)
T ss_dssp             -----CC------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTT
T ss_pred             -----CC------cccCHHHHHHHHHHcCCCcccCCCHHHHHhChh
Confidence                 11      012346789999999999999999999998764

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=9.8e-42  Score=374.78  Aligned_cols=255  Identities=10%  Similarity=-0.010  Sum_probs=180.1

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHH---HHHhcCCCCCcccce-------EEE
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKEL---EVLGKLSNSNVMTPL-------AYV  624 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~---~~l~~l~H~niv~~~-------~~~  624 (833)
                      .|...+.||+|+||.||+|+. .+|+.||||++.... .......+.+.+|+   ++|++ +|||||+++       +++
T Consensus        63 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~~  140 (371)
T 3q60_A           63 KLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGA-ENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDAV  140 (371)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCS-TTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEEE
T ss_pred             eeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecc-cccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehhe
Confidence            467789999999999999996 489999999995332 11223345778885   45555 799988755       444


Q ss_pred             ecC-----------------CceEEEEeeCCCCChhhhhhcCCCCCCCHHHH------HHHHHHHHHHHHhhhcCCCCCe
Q 003296          625 LAS-----------------DSAYLFYEYAPKGTLFDVLHGCLENALDWASR------YSIAVGVAQGLAFLHGFTSNPI  681 (833)
Q Consensus       625 ~~~-----------------~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~------~~i~~~i~~~l~ylH~~~~~~i  681 (833)
                      ..+                 ...|+|||||+ |+|.++++.. ...+++..+      ..++.|+++||+|||   +.+|
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~-~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH---~~~i  215 (371)
T 3q60_A          141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTL-DFVYVFRGDEGILALHILTAQLIRLAANLQ---SKGL  215 (371)
T ss_dssp             EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHH-HHSCCCCHHHHHHHHHHHHHHHHHHHHHHH---HTTE
T ss_pred             ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHh-ccccchhhhhhhhhHHHHHHHHHHHHHHHH---HCCC
Confidence            433                 23799999999 8999999853 123455566      788899999999999   7889


Q ss_pred             eecCCCccceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccC--CcccccCcchhhHHHHHHHHhCC
Q 003296          682 LLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT--MRVTMAGNVYSFGVILLELLTGK  759 (833)
Q Consensus       682 iHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~S~Gvvl~elltg~  759 (833)
                      +||||||+|||++.++.+||+|||+++.....     .....||+.|+|||++.+  ..++.++|||||||++|||+||+
T Consensus       216 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~  290 (371)
T 3q60_A          216 VHGHFTPDNLFIMPDGRLMLGDVSALWKVGTR-----GPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLF  290 (371)
T ss_dssp             EETTCSGGGEEECTTSCEEECCGGGEEETTCE-----EEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSS
T ss_pred             ccCcCCHHHEEECCCCCEEEEecceeeecCCC-----ccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999875321     124567799999999987  67999999999999999999999


Q ss_pred             CcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          760 TAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       760 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .||.+.......   .. ..............  .......+.++.+++.+||+.||++|||+.|+++|
T Consensus       291 ~Pf~~~~~~~~~---~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  353 (371)
T 3q60_A          291 LPFGLVTPGIKG---SW-KRPSLRVPGTDSLA--FGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMET  353 (371)
T ss_dssp             CSTTBCCTTCTT---CC-CBCCTTSCCCCSCC--CTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTS
T ss_pred             CCCCCcCccccc---ch-hhhhhhhccccccc--hhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            999754221000   00 00000000000110  00011234578899999999999999999999764

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.3e-40  Score=370.24  Aligned_cols=266  Identities=18%  Similarity=0.255  Sum_probs=183.8

Q ss_pred             HHHhcCC-ccccccCcccEEEEEEcC---CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec--
Q 003296          553 MEAVANP-LNVELKTRFSTYYKAVMP---SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA--  626 (833)
Q Consensus       553 ~~~~~~~-~~~ig~g~~g~vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~--  626 (833)
                      ..+.|+. .+.||+|+||.||+|+..   +++.||||++...      ...+.+.+|+++|++++|||||+++++|..  
T Consensus        18 ~~~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~------~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~   91 (405)
T 3rgf_A           18 VEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGT------GISMSACREIALLRELKHPNVISLQKVFLSHA   91 (405)
T ss_dssp             HHHHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSS------SCCHHHHHHHHHHHHCCCTTBCCCCEEEEETT
T ss_pred             hhhhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCC------CCCHHHHHHHHHHHhcCCCCeeeEeeEEecCC
Confidence            3455665 458999999999999964   6889999999422      234578999999999999999999999964  


Q ss_pred             CCceEEEEeeCCCCChhhhhhcC-------CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee----CC
Q 003296          627 SDSAYLFYEYAPKGTLFDVLHGC-------LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL----KS  695 (833)
Q Consensus       627 ~~~~~lv~ey~~~g~L~~~l~~~-------~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill----~~  695 (833)
                      ....|+||||++ |+|.+++...       ....+++..++.|+.|++.||+|||   +.+|+||||||+|||+    +.
T Consensus        92 ~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivH~Dlkp~NIll~~~~~~  167 (405)
T 3rgf_A           92 DRKVWLLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPE  167 (405)
T ss_dssp             TTEEEEEEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECCSSTT
T ss_pred             CCeEEEEEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeCCCcCHHHeEEecCCCC
Confidence            678999999997 5888887631       1224899999999999999999999   7889999999999999    67


Q ss_pred             CCCceeccceeeeeeCCCCCC-CccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccH-----
Q 003296          696 LKEPQIGDIELCKVIDPSKST-GSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNEL-----  768 (833)
Q Consensus       696 ~~~~ki~dfgl~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~-----  768 (833)
                      ++.+||+|||+++........ ......+||+.|+|||++.+. .++.++|||||||++|||++|+.||.+....     
T Consensus       168 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~  247 (405)
T 3rgf_A          168 RGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSN  247 (405)
T ss_dssp             TTCEEECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------C
T ss_pred             CCcEEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccc
Confidence            789999999999876432211 123457899999999998874 5899999999999999999999999743321     


Q ss_pred             ----HHHH--HHhhccc--cccccccc------------ccccCCchhHH-------HHHHHHHHHHHhccCCCCCCCCC
Q 003296          769 ----AKWV--LRNSAQQ--DKLDHILD------------FNVSRTSLAVR-------SQMLTVLKVAVACVSVSPEARPK  821 (833)
Q Consensus       769 ----~~~~--~~~~~~~--~~~~~~~~------------~~~~~~~~~~~-------~~~~~~~~l~~~cl~~dP~~Rps  821 (833)
                          ....  .......  .....+..            ...........       ....++.+++.+||+.||++|||
T Consensus       248 ~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~t  327 (405)
T 3rgf_A          248 PYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRIT  327 (405)
T ss_dssp             CCCHHHHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCC
T ss_pred             cchHHHHHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCC
Confidence                1111  0000000  00000000            00000000000       01346789999999999999999


Q ss_pred             HHHHHHH
Q 003296          822 MKSVLRM  828 (833)
Q Consensus       822 ~~evl~~  828 (833)
                      ++|+++|
T Consensus       328 a~e~L~h  334 (405)
T 3rgf_A          328 SEQAMQD  334 (405)
T ss_dssp             HHHHHTS
T ss_pred             HHHHhcC
Confidence            9999875

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=4e-41  Score=368.88  Aligned_cols=264  Identities=18%  Similarity=0.221  Sum_probs=201.6

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC-----C
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS-----D  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~-----~  628 (833)
                      ..|...+.||+|+||.||+|... +|+.||||++....   .....+.+.+|++++++++|||||++++++...     .
T Consensus        27 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~  103 (364)
T 3qyz_A           27 PRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFE---HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMK  103 (364)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTT---CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCC
T ss_pred             ccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEecccc---CcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccc
Confidence            46888899999999999999964 78999999995221   122346789999999999999999999999765     3


Q ss_pred             ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeee
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK  708 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~  708 (833)
                      ..|+||||++ |+|.+++..   ..+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++
T Consensus       104 ~~~iv~e~~~-~~L~~~l~~---~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~  176 (364)
T 3qyz_A          104 DVYIVQDLME-TDLYKLLKT---QHLSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLAR  176 (364)
T ss_dssp             CEEEEEECCS-EEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             eEEEEEcccC-cCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCChHhEEECCCCCEEEEeCcceE
Confidence            6899999997 599999975   35899999999999999999999   7899999999999999999999999999998


Q ss_pred             eeCCCCCC-CccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccc---
Q 003296          709 VIDPSKST-GSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLD---  783 (833)
Q Consensus       709 ~~~~~~~~-~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~---  783 (833)
                      ........ ......+||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+...................   
T Consensus       177 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~  256 (364)
T 3qyz_A          177 VADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDL  256 (364)
T ss_dssp             ECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHHH
T ss_pred             ecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHHH
Confidence            76533221 11245689999999998754 45899999999999999999999999865443322211110000000   


Q ss_pred             -cccc------------ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          784 -HILD------------FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       784 -~~~~------------~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                       .+.+            ...............++.+++.+||+.||++|||+.|+++|
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  314 (364)
T 3qyz_A          257 NCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH  314 (364)
T ss_dssp             HTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             HHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence             0000            00000000001224578899999999999999999999875

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=3.6e-41  Score=357.44  Aligned_cols=260  Identities=23%  Similarity=0.297  Sum_probs=197.3

Q ss_pred             HhcCCccccccCcccEEEEEEcC--CCc--eEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP--SGM--SYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~--~~~--~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      ++|+..+.||+|+||.||+|+..  ++.  .||||+++.. ........+.|.+|++++++++|||||++++++..++ .
T Consensus        18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~   95 (291)
T 1u46_A           18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPD-VLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M   95 (291)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC---------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C
T ss_pred             hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccC-ccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c
Confidence            46788899999999999999853  333  6899998422 2122234578999999999999999999999998765 8


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      ++||||+++|+|.+++... ...+++..+..++.|+++||+|||   +.+|+||||||+||+++.++.+|++|||+++..
T Consensus        96 ~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~  171 (291)
T 1u46_A           96 KMVTELAPLGSLLDRLRKH-QGHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRAL  171 (291)
T ss_dssp             EEEEECCTTCBHHHHHHHH-GGGSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEEC
T ss_pred             eeeEecccCCCHHHHHHhc-cCCcCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEEcCCCCEEEccccccccc
Confidence            9999999999999999753 245899999999999999999999   779999999999999999999999999999877


Q ss_pred             CCCCCCC-ccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          711 DPSKSTG-SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       711 ~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ....... ......||+.|+|||++.+..++.++|||||||++|||++ |+.||.+.... +.............     
T Consensus       172 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~-~~~~~~~~~~~~~~-----  245 (291)
T 1u46_A          172 PQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGS-QILHKIDKEGERLP-----  245 (291)
T ss_dssp             CC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHH-HHHHHHHTSCCCCC-----
T ss_pred             cccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHH-HHHHHHHccCCCCC-----
Confidence            5433211 1224568889999999988889999999999999999999 99999754432 22222111111100     


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR  833 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r  833 (833)
                       .      ....+.++.+++.+||+.||++|||+.|++++|++++
T Consensus       246 -~------~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~  283 (291)
T 1u46_A          246 -R------PEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQ  283 (291)
T ss_dssp             -C------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred             -C------CcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhC
Confidence             0      0123456889999999999999999999999998763

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=4.5e-41  Score=358.03  Aligned_cols=256  Identities=20%  Similarity=0.211  Sum_probs=205.2

Q ss_pred             HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccch-----hhhccChhHHHHHHHHHhcCC-CCCcccceEEEec
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDK-----IFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLA  626 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~-----~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~  626 (833)
                      .+.|+..+.||+|+||.||+|... +|+.||||++.....     .......+.+.+|++++++++ ||||+++++++..
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   95 (298)
T 1phk_A           16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   95 (298)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence            356788899999999999999974 789999999853211     111123467899999999996 9999999999999


Q ss_pred             CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceecccee
Q 003296          627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIEL  706 (833)
Q Consensus       627 ~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl  706 (833)
                      ++..++||||+++|+|.+++..  ...+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+
T Consensus        96 ~~~~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~  170 (298)
T 1phk_A           96 NTFFFLVFDLMKKGELFDYLTE--KVTLSEKETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDMNIKLTDFGF  170 (298)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred             CCeEEEEEeccCCCcHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEEcCCCcEEEecccc
Confidence            9999999999999999999986  346899999999999999999999   78999999999999999999999999999


Q ss_pred             eeeeCCCCCCCcccccccccccccccccc------CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc
Q 003296          707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAY------TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD  780 (833)
Q Consensus       707 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~  780 (833)
                      ++......   ......||+.|+|||++.      ...++.++|||||||++|||++|+.||.......... .......
T Consensus       171 ~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~-~~~~~~~  246 (298)
T 1phk_A          171 SCQLDPGE---KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLR-MIMSGNY  246 (298)
T ss_dssp             CEECCTTC---CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH-HHHHTCC
T ss_pred             hhhcCCCc---ccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHHHHHH-HHhcCCc
Confidence            98765433   224567999999999875      4568899999999999999999999997544322111 1111100


Q ss_pred             cccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          781 KLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       781 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .          .........+.++.+++.+||+.||++|||+.|++++
T Consensus       247 ~----------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h  284 (298)
T 1phk_A          247 Q----------FGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAH  284 (298)
T ss_dssp             C----------CCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred             c----------cCcccccccCHHHHHHHHHHccCCcccCCCHHHHHhC
Confidence            0          0001111234578899999999999999999999864

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=1.6e-40  Score=366.51  Aligned_cols=203  Identities=20%  Similarity=0.175  Sum_probs=173.8

Q ss_pred             HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CC-----CcccceEEEec
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NS-----NVMTPLAYVLA  626 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~-----niv~~~~~~~~  626 (833)
                      .+.|+..+.||+|+||.||+|... +|+.||||+++...     ...+++.+|+++++.++ |+     +||++++++..
T Consensus        53 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~-----~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~  127 (382)
T 2vx3_A           53 MDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKK-----AFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMF  127 (382)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSH-----HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEE
T ss_pred             eeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccH-----HHHHHHHHHHHHHHHHHhcccccceeEEEeeeeecc
Confidence            457888999999999999999974 78999999995221     12456788999998885 55     49999999999


Q ss_pred             CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC--CCCCceeccc
Q 003296          627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK--SLKEPQIGDI  704 (833)
Q Consensus       627 ~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~--~~~~~ki~df  704 (833)
                      ++..|+||||++ |+|.+++.......+++..+..++.|++.||+|||++ ..+||||||||+|||++  .++.+||+||
T Consensus       128 ~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DF  205 (382)
T 2vx3_A          128 RNHLCLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDF  205 (382)
T ss_dssp             TTEEEEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCC
T ss_pred             CCceEEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEec
Confidence            999999999996 5999999876555699999999999999999999953 46899999999999994  5788999999


Q ss_pred             eeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccH
Q 003296          705 ELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNEL  768 (833)
Q Consensus       705 gl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~  768 (833)
                      |+++.....     ....+||+.|+|||++.+..++.++|||||||++|||+||+.||.+....
T Consensus       206 G~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~~~~  264 (382)
T 2vx3_A          206 GSSCQLGQR-----IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEV  264 (382)
T ss_dssp             TTCEETTCC-----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             cCceecccc-----cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            999876432     23568999999999999989999999999999999999999999865543

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=6.4e-41  Score=361.76  Aligned_cols=267  Identities=17%  Similarity=0.198  Sum_probs=205.1

Q ss_pred             HHHhcCCccccccCcccEEEEEEc--CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC---CCCCcccceEEEe--
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVM--PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL---SNSNVMTPLAYVL--  625 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~--~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l---~H~niv~~~~~~~--  625 (833)
                      +.+.|+..+.||+|+||.||+|..  .+|+.||||++.....  .......+.+|+++++++   +||||++++++|.  
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~   86 (326)
T 1blx_A            9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTG--EEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVS   86 (326)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBC--TTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEE
T ss_pred             chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcc--cccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeec
Confidence            345788899999999999999997  4689999999853221  122345678898888777   8999999999997  


Q ss_pred             ---cCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceec
Q 003296          626 ---ASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIG  702 (833)
Q Consensus       626 ---~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~  702 (833)
                         .....++||||++ |+|.+++.......+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+
T Consensus        87 ~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~gi~H~dlkp~Nili~~~~~~kl~  162 (326)
T 1blx_A           87 RTDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLA  162 (326)
T ss_dssp             ECSSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEEC
T ss_pred             ccCCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCCHHHeEEcCCCCEEEe
Confidence               4567899999998 69999998765556999999999999999999999   7899999999999999999999999


Q ss_pred             cceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhh--ccc-
Q 003296          703 DIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNS--AQQ-  779 (833)
Q Consensus       703 dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~--~~~-  779 (833)
                      |||+++......   ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+......+.....  ... 
T Consensus       163 Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~  239 (326)
T 1blx_A          163 DFGLARIYSFQM---ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPG  239 (326)
T ss_dssp             SCCSCCCCCGGG---GGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCC
T ss_pred             cCcccccccCCC---CccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCC
Confidence            999998654221   22456799999999999988999999999999999999999999986554433221111  000 


Q ss_pred             -ccccc-------cccc-cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          780 -DKLDH-------ILDF-NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       780 -~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                       .....       .... ............+..+.+++.+||+.||++|||+.|+++|
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  297 (326)
T 1blx_A          240 EEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSH  297 (326)
T ss_dssp             GGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             cccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence             00000       0000 0000000011234567899999999999999999999865

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=1.1e-40  Score=366.29  Aligned_cols=259  Identities=17%  Similarity=0.168  Sum_probs=197.4

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce---
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA---  630 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~---  630 (833)
                      +.|...+.||+|+||.||+|.. .+|+.||||++....  ......+.+.+|++++++++|||||+++++|...+..   
T Consensus        42 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~  119 (371)
T 4exu_A           42 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPF--QSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF  119 (371)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTT--SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTC
T ss_pred             ccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccc--cchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccc
Confidence            4677889999999999999996 479999999995321  1122346789999999999999999999999887654   


Q ss_pred             ---EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          631 ---YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       631 ---~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                         |+||||++ |+|.+++..    .+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||++
T Consensus       120 ~~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a  191 (371)
T 4exu_A          120 YDFYLVMPFMQ-TDLQKIMGM----EFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLA  191 (371)
T ss_dssp             CCCEEEEECCC-EEHHHHTTS----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECSTTCC
T ss_pred             eeEEEEEcccc-ccHHHHhhc----CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCcCHHHeEECCCCCEEEEecCcc
Confidence               99999997 699888753    4899999999999999999999   779999999999999999999999999999


Q ss_pred             eeeCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc
Q 003296          708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL  786 (833)
Q Consensus       708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  786 (833)
                      +.....     ....+||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+..............+....+..
T Consensus       192 ~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~  266 (371)
T 4exu_A          192 RHADAE-----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFV  266 (371)
T ss_dssp             -------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHH
T ss_pred             cccccC-----cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHH
Confidence            865432     245679999999999876 67899999999999999999999999865543322211111000000000


Q ss_pred             cc-----------ccc-CC----chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          787 DF-----------NVS-RT----SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       787 ~~-----------~~~-~~----~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ..           ... ..    .........++.+++.+||+.||++|||++|+++|
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  324 (371)
T 4exu_A          267 QKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH  324 (371)
T ss_dssp             TTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             HHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcC
Confidence            00           000 00    00011234678899999999999999999999875

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=5.9e-41  Score=367.61  Aligned_cols=269  Identities=16%  Similarity=0.156  Sum_probs=196.8

Q ss_pred             HHHHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhh-------hccChhHHHHHHHHHhcCCCCCcccceEEE
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIF-------QLGSHHKFDKELEVLGKLSNSNVMTPLAYV  624 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~-------~~~~~~~~~~E~~~l~~l~H~niv~~~~~~  624 (833)
                      .+.+.|...+.||+|+||.||+|...+|..||||++.......       .....+.|.+|++++++++|||||++++++
T Consensus        19 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~   98 (362)
T 3pg1_A           19 AMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLRDIF   98 (362)
T ss_dssp             HTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEE
T ss_pred             HhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccceeeeE
Confidence            5667899999999999999999999889999999984321111       011136799999999999999999999999


Q ss_pred             ecC-----CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCc
Q 003296          625 LAS-----DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEP  699 (833)
Q Consensus       625 ~~~-----~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~  699 (833)
                      ...     ...|+||||++ |+|.+++... ...+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+
T Consensus        99 ~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~~  173 (362)
T 3pg1_A           99 VHFEEPAMHKLYLVTELMR-TDLAQVIHDQ-RIVISPQHIQYFMYHILLGLHVLH---EAGVVHRDLHPGNILLADNNDI  173 (362)
T ss_dssp             EECCTTTCCEEEEEEECCS-EEHHHHHHCT-TSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCE
T ss_pred             EeccCCCcceEEEEEccCC-CCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHH---HCcCEecCCChHHEEEcCCCCE
Confidence            543     35899999998 6999988753 346999999999999999999999   7789999999999999999999


Q ss_pred             eeccceeeeeeCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcc
Q 003296          700 QIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQ  778 (833)
Q Consensus       700 ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~  778 (833)
                      ||+|||+++......   ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+..............
T Consensus       174 kl~Dfg~~~~~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~  250 (362)
T 3pg1_A          174 TICDFNLAREDTADA---NKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVV  250 (362)
T ss_dssp             EECCTTC------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHH
T ss_pred             EEEecCccccccccc---ccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHc
Confidence            999999998654332   2245679999999998876 678999999999999999999999998654332221111000


Q ss_pred             c-cccc-----------ccccccc---cC--CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          779 Q-DKLD-----------HILDFNV---SR--TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       779 ~-~~~~-----------~~~~~~~---~~--~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      . ....           .......   ..  ...........+.+++.+||+.||++|||+.|+++|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  317 (362)
T 3pg1_A          251 GTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALRH  317 (362)
T ss_dssp             CCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             CCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHcC
Confidence            0 0000           0000000   00  000011224568899999999999999999999875

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=1.1e-40  Score=361.97  Aligned_cols=260  Identities=16%  Similarity=0.212  Sum_probs=202.9

Q ss_pred             HhcCCccccccCcccEEEEEEc--CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCC------cccceEEEec
Q 003296          555 AVANPLNVELKTRFSTYYKAVM--PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSN------VMTPLAYVLA  626 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~--~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~n------iv~~~~~~~~  626 (833)
                      +.|+..+.||+|+||.||+|..  .+|+.||||+++...     ...+.+.+|++++++++|++      ++++++++..
T Consensus        14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-----~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~   88 (339)
T 1z57_A           14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD-----RYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEH   88 (339)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSH-----HHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEE
T ss_pred             CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCC-----chhHHHHHHHHHHHHhhhcCCCCceeeEeeeccccc
Confidence            4678889999999999999986  378999999994221     12467889999999987765      9999999999


Q ss_pred             CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC-----------
Q 003296          627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS-----------  695 (833)
Q Consensus       627 ~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~-----------  695 (833)
                      .+..++||||+ +|+|.+++.......+++.++..++.|+++||+|||   +.+|+||||||+||+++.           
T Consensus        89 ~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~  164 (339)
T 1z57_A           89 HGHICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLH---SNKLTHTDLKPENILFVQSDYTEAYNPKI  164 (339)
T ss_dssp             TTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCCCEEEEEC---
T ss_pred             CCcEEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeccccccccCCcc
Confidence            99999999999 889999998755557899999999999999999999   789999999999999987           


Q ss_pred             --------CCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc
Q 003296          696 --------LKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE  767 (833)
Q Consensus       696 --------~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~  767 (833)
                              ++.+||+|||+++......     ....||+.|+|||++.+..++.++|||||||++|||++|+.||.....
T Consensus       165 ~~~~~~~~~~~~kl~Dfg~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~  239 (339)
T 1z57_A          165 KRDERTLINPDIKVVDFGSATYDDEHH-----STLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDS  239 (339)
T ss_dssp             -CEEEEESCCCEEECCCSSCEETTSCC-----CSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCH
T ss_pred             ccccccccCCCceEeeCcccccCcccc-----ccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCh
Confidence                    6689999999998754322     346899999999999998999999999999999999999999985543


Q ss_pred             HHHHHHHhhccccccccc---------cc---ccc-----------------cCCchhHHHHHHHHHHHHHhccCCCCCC
Q 003296          768 LAKWVLRNSAQQDKLDHI---------LD---FNV-----------------SRTSLAVRSQMLTVLKVAVACVSVSPEA  818 (833)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~---------~~---~~~-----------------~~~~~~~~~~~~~~~~l~~~cl~~dP~~  818 (833)
                      .................+         ..   ...                 ............++.+++.+||+.||++
T Consensus       240 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~  319 (339)
T 1z57_A          240 KEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAK  319 (339)
T ss_dssp             HHHHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTT
T ss_pred             HHHHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCccc
Confidence            222111100000000000         00   000                 0000001134567889999999999999


Q ss_pred             CCCHHHHHHH
Q 003296          819 RPKMKSVLRM  828 (833)
Q Consensus       819 Rps~~evl~~  828 (833)
                      |||+.|+++|
T Consensus       320 Rpt~~ell~h  329 (339)
T 1z57_A          320 RITLREALKH  329 (339)
T ss_dssp             SCCHHHHTTS
T ss_pred             ccCHHHHhcC
Confidence            9999999876

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=4.2e-41  Score=359.00  Aligned_cols=253  Identities=16%  Similarity=0.230  Sum_probs=198.5

Q ss_pred             HHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      .+.|+..+.||+|+||.||+|... +|+.||+|++...    .....+.|.+|++++++++|||||++++++..++..++
T Consensus        18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~----~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   93 (302)
T 2j7t_A           18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETK----SEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWI   93 (302)
T ss_dssp             GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC--------CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEE
T ss_pred             ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCC----CHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEE
Confidence            356788899999999999999975 6899999998422    23446789999999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||||+++|+|.+++... ...+++..+..++.|++.||+|||   ..+|+||||||+||+++.++.+||+|||++.....
T Consensus        94 v~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  169 (302)
T 2j7t_A           94 MIEFCPGGAVDAIMLEL-DRGLTEPQIQVVCRQMLEALNFLH---SKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLK  169 (302)
T ss_dssp             EEECCTTEEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHH
T ss_pred             EEEeCCCCcHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHHHEEECCCCCEEEEECCCCccccc
Confidence            99999999999998753 345899999999999999999999   77999999999999999999999999998754321


Q ss_pred             CCCCCccccccccccccccccc-----cCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYA-----YTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~-----~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (833)
                      ..  .......||+.|+|||++     .+..++.++|||||||++|||++|+.||.......... ..... .. .... 
T Consensus       170 ~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~-~~~~~-~~-~~~~-  243 (302)
T 2j7t_A          170 TL--QKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLL-KIAKS-DP-PTLL-  243 (302)
T ss_dssp             HH--HC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHH-HHHHS-CC-CCCS-
T ss_pred             cc--cccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHH-HHhcc-CC-cccC-
Confidence            11  011345799999999987     35678999999999999999999999997654332211 11111 10 0000 


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                              .....+.++.+++.+||+.||++|||+.|+++|
T Consensus       244 --------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h  276 (302)
T 2j7t_A          244 --------TPSKWSVEFRDFLKIALDKNPETRPSAAQLLEH  276 (302)
T ss_dssp             --------SGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTTS
T ss_pred             --------CccccCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence                    011223467899999999999999999999864

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=9.4e-41  Score=370.96  Aligned_cols=261  Identities=14%  Similarity=0.126  Sum_probs=200.2

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC--------CCCcccceEEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS--------NSNVMTPLAYV  624 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~--------H~niv~~~~~~  624 (833)
                      .+.|+..+.||+|+||.||+|+. .+|+.||||++....     ...+.+.+|++++++++        |||||+++++|
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~  110 (397)
T 1wak_A           36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAE-----HYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDF  110 (397)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-----HHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEE
T ss_pred             CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCC-----cchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecce
Confidence            35688889999999999999986 578999999995221     12467899999999996        78899999999


Q ss_pred             e----cCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCC-CeeecCCCccceeeCCCC--
Q 003296          625 L----ASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSN-PILLLDLSTRNIFLKSLK--  697 (833)
Q Consensus       625 ~----~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~-~iiHrdlk~~Nill~~~~--  697 (833)
                      .    .....|+||||+ +|++.+++.......+++..++.++.|++.||+|||   +. +|+||||||+|||++.++  
T Consensus       111 ~~~~~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~givHrDikp~NIll~~~~~~  186 (397)
T 1wak_A          111 KISGVNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLH---TKCRIIHTDIKPENILLSVNEQY  186 (397)
T ss_dssp             EEEETTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHH---HTTCEECCCCSGGGEEECCCHHH
T ss_pred             eecCCCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HhCCEecCCCCHHHeeEeccchh
Confidence            8    556799999999 667777776544457999999999999999999999   66 899999999999999775  


Q ss_pred             -----------------------------------------------CceeccceeeeeeCCCCCCCccccccccccccc
Q 003296          698 -----------------------------------------------EPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIP  730 (833)
Q Consensus       698 -----------------------------------------------~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  730 (833)
                                                                     .+||+|||+++.....     ....+||+.|+|
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~-----~~~~~gt~~y~a  261 (397)
T 1wak_A          187 IRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH-----FTEDIQTRQYRS  261 (397)
T ss_dssp             HHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC-----SCSCCSCGGGCC
T ss_pred             hhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc-----CccCCCCCcccC
Confidence                                                           7999999999876432     234679999999


Q ss_pred             cccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc------HHHH--HHHhhccc--------cccccccccc-----
Q 003296          731 PEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE------LAKW--VLRNSAQQ--------DKLDHILDFN-----  789 (833)
Q Consensus       731 PE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~------~~~~--~~~~~~~~--------~~~~~~~~~~-----  789 (833)
                      ||++.+..++.++|||||||++|||+||+.||.....      ....  +.......        ..........     
T Consensus       262 PE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  341 (397)
T 1wak_A          262 LEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKH  341 (397)
T ss_dssp             HHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSS
T ss_pred             ChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCcccccc
Confidence            9999998999999999999999999999999974321      1111  10000000        0000000000     


Q ss_pred             ---ccC---------CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          790 ---VSR---------TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       790 ---~~~---------~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                         ...         ..........++.+++.+||+.||++|||++|+++|
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  392 (397)
T 1wak_A          342 ITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRH  392 (397)
T ss_dssp             CCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHTS
T ss_pred             ccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhhC
Confidence               000         000123456788999999999999999999999975

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=3.2e-41  Score=372.98  Aligned_cols=260  Identities=16%  Similarity=0.190  Sum_probs=195.3

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc-----
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS-----  629 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~-----  629 (833)
                      ..|...+.||+|+||.||+|+...+..||||++....        +...+|++++++++|||||+++++|...+.     
T Consensus        40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~--------~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~  111 (394)
T 4e7w_A           40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDK--------RFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEV  111 (394)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCT--------TSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCE
T ss_pred             ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCc--------chHHHHHHHHHhCCCCCcceEEEEEEecCCCCCce
Confidence            3577889999999999999998777779999984221        223479999999999999999999975443     


Q ss_pred             -eEEEEeeCCCCChhhhhh-cCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC-CCCCceecccee
Q 003296          630 -AYLFYEYAPKGTLFDVLH-GCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK-SLKEPQIGDIEL  706 (833)
Q Consensus       630 -~~lv~ey~~~g~L~~~l~-~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~-~~~~~ki~dfgl  706 (833)
                       .++|||||+++.+....+ ......+++..+..++.|+++||+|||   +.+|+||||||+|||++ .++.+||+|||+
T Consensus       112 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~kL~DFG~  188 (394)
T 4e7w_A          112 FLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIH---SIGICHRDIKPQNLLLDPPSGVLKLIDFGS  188 (394)
T ss_dssp             EEEEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTT
T ss_pred             EEEEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEcCCCCcEEEeeCCC
Confidence             789999998754433322 112346999999999999999999999   78999999999999999 789999999999


Q ss_pred             eeeeCCCCCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccc---
Q 003296          707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL---  782 (833)
Q Consensus       707 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~---  782 (833)
                      |+.......   .....||+.|+|||++.+. .|+.++||||+||++|||++|+.||.+..............+...   
T Consensus       189 a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~  265 (394)
T 4e7w_A          189 AKILIAGEP---NVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQ  265 (394)
T ss_dssp             CEECCTTCC---CCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHH
T ss_pred             cccccCCCC---CcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHH
Confidence            998754432   2356789999999998764 589999999999999999999999987654433322111100000   


Q ss_pred             -----ccccccc---ccCCchh---HHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          783 -----DHILDFN---VSRTSLA---VRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       783 -----~~~~~~~---~~~~~~~---~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                           .......   .......   ....+.++.+++.+||+.||++|||+.|+++|
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  322 (394)
T 4e7w_A          266 IKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCH  322 (394)
T ss_dssp             HHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             HHhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcC
Confidence                 0000000   0000000   01134578999999999999999999999976

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.1e-40  Score=359.97  Aligned_cols=252  Identities=16%  Similarity=0.267  Sum_probs=196.8

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEec-----
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLA-----  626 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~-----  626 (833)
                      .+.|+..+.||+|+||.||+|.. .+|+.||||++...     ....+.+.+|+++++++ +||||+++++++..     
T Consensus        23 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~-----~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~   97 (326)
T 2x7f_A           23 AGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVT-----GDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPG   97 (326)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-----SSTTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--C
T ss_pred             CCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecC-----cccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCcc
Confidence            45678889999999999999997 58999999998422     12357899999999999 79999999999987     


Q ss_pred             -CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccce
Q 003296          627 -SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIE  705 (833)
Q Consensus       627 -~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfg  705 (833)
                       .+..++||||+++|+|.+++.......+++..+..++.|++.||+|||   ..+|+||||||+||+++.++.+||+|||
T Consensus        98 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg  174 (326)
T 2x7f_A           98 MDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLH---QHKVIHRDIKGQNVLLTENAEVKLVDFG  174 (326)
T ss_dssp             CCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEECCCT
T ss_pred             ccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCcHHHEEEcCCCCEEEeeCc
Confidence             467899999999999999998654457899999999999999999999   7789999999999999999999999999


Q ss_pred             eeeeeCCCCCCCcccccccccccccccccc-----CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc
Q 003296          706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAY-----TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD  780 (833)
Q Consensus       706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~  780 (833)
                      ++........  ......||+.|+|||++.     +..++.++|||||||++|||++|+.||.+............ .  
T Consensus       175 ~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~-~--  249 (326)
T 2x7f_A          175 VSAQLDRTVG--RRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPR-N--  249 (326)
T ss_dssp             TTC---------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHH-S--
T ss_pred             CceecCcCcc--ccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhc-C--
Confidence            9886543221  223467999999999986     55689999999999999999999999976543322211111 1  


Q ss_pred             cccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          781 KLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       781 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ........          ..+..+.+++.+||+.||++|||++|++++
T Consensus       250 ~~~~~~~~----------~~~~~l~~li~~~l~~dp~~Rps~~~ll~h  287 (326)
T 2x7f_A          250 PAPRLKSK----------KWSKKFQSFIESCLVKNHSQRPATEQLMKH  287 (326)
T ss_dssp             CCCCCSCS----------CSCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             ccccCCcc----------ccCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence            00111000          123467899999999999999999999874

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=2.6e-40  Score=372.50  Aligned_cols=258  Identities=15%  Similarity=0.164  Sum_probs=202.9

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCC-cccceEEEecCCceEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSN-VMTPLAYVLASDSAYL  632 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~n-iv~~~~~~~~~~~~~l  632 (833)
                      +.|+..+.||+|+||.||+|+. .+|+.||||++...      ...+++.+|+++++.++|++ |+.+..++...+..++
T Consensus         7 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~------~~~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~l   80 (483)
T 3sv0_A            7 NKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVK------TKHPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVL   80 (483)
T ss_dssp             TTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETT------CSSCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEE
T ss_pred             CcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccc------cccHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEE
Confidence            5688899999999999999996 57999999987422      12346899999999998754 5555566677788999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee---CCCCCceeccceeeee
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL---KSLKEPQIGDIELCKV  709 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill---~~~~~~ki~dfgl~~~  709 (833)
                      ||||+ +|+|.+++... ...++|.+++.|+.||+.||+|||   ..+||||||||+|||+   +.++.+||+|||+++.
T Consensus        81 vme~~-g~sL~~ll~~~-~~~l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~  155 (483)
T 3sv0_A           81 VMDLL-GPSLEDLFNFC-SRKLSLKTVLMLADQMINRVEFVH---SKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKK  155 (483)
T ss_dssp             EEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEE
T ss_pred             EEECC-CCCHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccCcceEEEecCCCCCeEEEEeCCccee
Confidence            99999 99999999853 346999999999999999999999   7899999999999999   6889999999999998


Q ss_pred             eCCCCCCC-----ccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc--HHHHHHHhhcccccc
Q 003296          710 IDPSKSTG-----SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE--LAKWVLRNSAQQDKL  782 (833)
Q Consensus       710 ~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~--~~~~~~~~~~~~~~~  782 (833)
                      ........     ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+...  ..+........  ..
T Consensus       156 ~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~--~~  233 (483)
T 3sv0_A          156 YRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEK--KV  233 (483)
T ss_dssp             CBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHH--HH
T ss_pred             ccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhc--cc
Confidence            75433211     12257899999999999999999999999999999999999999985332  11111111000  00


Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          783 DHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ...+.       ......+.++.+++.+||+.||++||++.+|++.|+++
T Consensus       234 ~~~~~-------~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l  276 (483)
T 3sv0_A          234 ATSIE-------ALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDL  276 (483)
T ss_dssp             HSCHH-------HHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred             cccHH-------HHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence            00000       00112245788999999999999999999999998864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.3e-38  Score=361.00  Aligned_cols=323  Identities=28%  Similarity=0.397  Sum_probs=213.3

Q ss_pred             CCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEcc
Q 003296            7 IDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLS   86 (833)
Q Consensus         7 l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~   86 (833)
                      +++++.|++++|.+..+|.+..+++|++|||++|.++++.+  |.++++|++|+|++|.+++..+  +..+++|++|+|+
T Consensus        45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~  120 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF  120 (466)
T ss_dssp             HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECC
Confidence            56788999999999888888888999999999999887765  8889999999999999887655  8889999999999


Q ss_pred             CCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccC
Q 003296           87 GNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSV  166 (833)
Q Consensus        87 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~  166 (833)
                      +|.+++..+  +..+++|++|+|++|.+++. + .++.+++|++|+++ |.+.+..+  +..+++|+.|++++|.+++..
T Consensus       121 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~  193 (466)
T 1o6v_A          121 NNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDIS  193 (466)
T ss_dssp             SSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred             CCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCcCCCCh
Confidence            998886543  88889999999999988864 3 48888999999986 55554332  677777777776666665432


Q ss_pred             ChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCC
Q 003296          167 PGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLT  246 (833)
Q Consensus       167 p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~  246 (833)
                      .-.-.+.|++|++++|++.+..|  +..+++|+.|++++|.+++.                         ..+..+++|+
T Consensus       194 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-------------------------~~l~~l~~L~  246 (466)
T 1o6v_A          194 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-------------------------GTLASLTNLT  246 (466)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-------------------------GGGGGCTTCS
T ss_pred             hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-------------------------hhhhcCCCCC
Confidence            22223445566666665555443  34455555555555555432                         1344555666


Q ss_pred             EEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCc
Q 003296          247 YLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNS  326 (833)
Q Consensus       247 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~  326 (833)
                      +|++++|.+++..+  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|++++..+  +..+++|+.|++++|.
T Consensus       247 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~  320 (466)
T 1o6v_A          247 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN  320 (466)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSC
T ss_pred             EEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCc
Confidence            66666666555433  5555666666666666554333  5555566666666666654433  4555666666666666


Q ss_pred             CcccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCc
Q 003296          327 LSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSG  377 (833)
Q Consensus       327 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  377 (833)
                      +++..|  +..+++|+.|++++|++++.  ..+..+++|+.|++++|++++
T Consensus       321 l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~  367 (466)
T 1o6v_A          321 ISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD  367 (466)
T ss_dssp             CSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred             CCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence            655444  45556666666666665543  345556666666666655543

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=1.5e-40  Score=351.92  Aligned_cols=255  Identities=22%  Similarity=0.248  Sum_probs=205.2

Q ss_pred             HHHHhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      ...+.|+..+.||+|+||.||+|+.. +|+.||||++....  ......+.+.+|++++++++||||+++++++...+..
T Consensus        19 ~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   96 (287)
T 2wei_A           19 TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKAS--AKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSF   96 (287)
T ss_dssp             HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGG--BSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEE
T ss_pred             HHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccc--cchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeE
Confidence            56678999999999999999999975 79999999984221  2234567899999999999999999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC---CCceeccceee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL---KEPQIGDIELC  707 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~---~~~ki~dfgl~  707 (833)
                      ++||||+++|+|.+++..  ...+++.++..++.|++.||+|||   ..+|+||||||+||+++.+   +.+|++|||++
T Consensus        97 ~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~  171 (287)
T 2wei_A           97 YIVGELYTGGELFDEIIK--RKRFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLS  171 (287)
T ss_dssp             EEEECCCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECSTTGG
T ss_pred             EEEEEccCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCChhhEEEecCCCcccEEEeccCcc
Confidence            999999999999998875  346899999999999999999999   7799999999999999754   46999999999


Q ss_pred             eeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc
Q 003296          708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (833)
                      +......   ......||+.|+|||++.+ .++.++|||||||++|||++|+.||.+..... ...........      
T Consensus       172 ~~~~~~~---~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~-~~~~~~~~~~~------  240 (287)
T 2wei_A          172 TCFQQNT---KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYD-ILKRVETGKYA------  240 (287)
T ss_dssp             GTBCCCS---SCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCCCC------
T ss_pred             eeecCCC---ccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCHHH-HHHHHHcCCCC------
Confidence            8654332   1234568999999998765 48999999999999999999999997644322 11111111000      


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                          .........+.++.+++.+||+.||++|||+.|++++
T Consensus       241 ----~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h  277 (287)
T 2wei_A          241 ----FDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEH  277 (287)
T ss_dssp             ----CCSGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             ----CCchhhhhcCHHHHHHHHHHcccChhhCcCHHHHhcC
Confidence                0001111234568899999999999999999999984

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=8.2e-41  Score=362.64  Aligned_cols=253  Identities=19%  Similarity=0.218  Sum_probs=183.1

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEe-------
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVL-------  625 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~-------  625 (833)
                      ..|+..+.||+|+||.||+|+. .+|+.||||++....    ....+.+.+|+++++++. |||||++++++.       
T Consensus        28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~  103 (337)
T 3ll6_A           28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNE----EEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESD  103 (337)
T ss_dssp             EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESS----HHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTST
T ss_pred             ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCc----hHHHHHHHHHHHHHHHhccCCChhhccccccccccccc
Confidence            3577889999999999999996 489999999984322    123467899999999996 999999999994       


Q ss_pred             -cCCceEEEEeeCCCCChhhhhhcC-CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCC--eeecCCCccceeeCCCCCcee
Q 003296          626 -ASDSAYLFYEYAPKGTLFDVLHGC-LENALDWASRYSIAVGVAQGLAFLHGFTSNP--ILLLDLSTRNIFLKSLKEPQI  701 (833)
Q Consensus       626 -~~~~~~lv~ey~~~g~L~~~l~~~-~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~Nill~~~~~~ki  701 (833)
                       .....++||||+. |+|.+++... ....+++.+++.++.|++.||+|||   ..+  |+||||||+||+++.++.+||
T Consensus       104 ~~~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~~~ivH~Dikp~NIl~~~~~~~kl  179 (337)
T 3ll6_A          104 TGQAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMH---RQKPPIIHRDLKVENLLLSNQGTIKL  179 (337)
T ss_dssp             TSSEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCCCCCGGGCEECTTSCEEB
T ss_pred             cCCceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCEEEccCCcccEEECCCCCEEE
Confidence             2345899999996 7999988642 2346999999999999999999999   666  999999999999999999999


Q ss_pred             ccceeeeeeCCCCCCC----------ccccccccccccccccc---cCCcccccCcchhhHHHHHHHHhCCCcccCCccH
Q 003296          702 GDIELCKVIDPSKSTG----------SLSTVAGSVGYIPPEYA---YTMRVTMAGNVYSFGVILLELLTGKTAVNQGNEL  768 (833)
Q Consensus       702 ~dfgl~~~~~~~~~~~----------~~~~~~gt~~y~aPE~~---~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~  768 (833)
                      +|||+++.........          ......||+.|+|||++   .+..++.++|||||||++|||+||+.||......
T Consensus       180 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~  259 (337)
T 3ll6_A          180 CDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKL  259 (337)
T ss_dssp             CCCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC------
T ss_pred             ecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHH
Confidence            9999998764322110          11245699999999998   5667899999999999999999999999753321


Q ss_pred             HHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          769 AKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      . ....          ........      .....+.+++.+||+.||++|||+.|++++|+++
T Consensus       260 ~-~~~~----------~~~~~~~~------~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~  306 (337)
T 3ll6_A          260 R-IVNG----------KYSIPPHD------TQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEI  306 (337)
T ss_dssp             -----------------CCCCTTC------CSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHH
T ss_pred             H-hhcC----------cccCCccc------ccchHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence            1 0000          00000000      1122467899999999999999999999999865

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=8.5e-41  Score=359.65  Aligned_cols=257  Identities=17%  Similarity=0.235  Sum_probs=198.5

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      +.|+..+.||+|+||.||+|....  .||||+++...  ......+.|.+|++++++++|||||++++++..++..++||
T Consensus        33 ~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~  108 (319)
T 2y4i_B           33 EQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIER--DNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIIT  108 (319)
T ss_dssp             SCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCS--CCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEEC
T ss_pred             HHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCC--CCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEe
Confidence            457788999999999999998743  59999995322  12234467889999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.+++... ...+++.++..++.|++.||+|||   +.+|+||||||+||+++ ++.+|++|||+++......
T Consensus       109 e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~  183 (319)
T 2y4i_B          109 SLCKGRTLYSVVRDA-KIVLDVNKTRQIAQEIVKGMGYLH---AKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQ  183 (319)
T ss_dssp             BCCCSEEHHHHTTSS-CCCCCSHHHHHHHHHHHHHHHHHH---HTTCCCCCCCSTTEEEC---CCEECCCSCCC------
T ss_pred             ecccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCccccCCChhhEEEe-CCCEEEeecCCcccccccc
Confidence            999999999999863 346899999999999999999999   77899999999999998 6799999999987653211


Q ss_pred             ---CCCccccccccccccccccccC---------CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccc
Q 003296          715 ---STGSLSTVAGSVGYIPPEYAYT---------MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL  782 (833)
Q Consensus       715 ---~~~~~~~~~gt~~y~aPE~~~~---------~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~  782 (833)
                         .........||+.|+|||++.+         ..++.++|||||||++|||++|+.||...... ......... . .
T Consensus       184 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-~~~~~~~~~-~-~  260 (319)
T 2y4i_B          184 AGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAE-AIIWQMGTG-M-K  260 (319)
T ss_dssp             ----CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHH-HHHHHHHTT-C-C
T ss_pred             ccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHhccC-C-C
Confidence               1112234569999999998864         35789999999999999999999999754332 111111111 0 0


Q ss_pred             cccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296          783 DHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR  833 (833)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r  833 (833)
                      ......          ..+.++.+++.+||+.||++|||+.|++++|++++
T Consensus       261 ~~~~~~----------~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~  301 (319)
T 2y4i_B          261 PNLSQI----------GMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLP  301 (319)
T ss_dssp             CCCCCS----------SCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC-
T ss_pred             CCCCcC----------CCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHH
Confidence            010000          11235778999999999999999999999998764

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=3e-40  Score=361.84  Aligned_cols=267  Identities=17%  Similarity=0.134  Sum_probs=190.7

Q ss_pred             HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc-
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS-  629 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~-  629 (833)
                      ...+.|...+.||+|+||.||+|+. .+|+.||||++...     ......+.+|++.+++++|||||+++++|...+. 
T Consensus        20 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~   94 (360)
T 3e3p_A           20 KEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQD-----PRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER   94 (360)
T ss_dssp             HHHTTEEEC----------CEEEEETTTCCEEEEEEEECC-----TTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred             hhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecC-----ccccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence            5667899999999999999999997 47999999998422     1234567889999999999999999999976443 


Q ss_pred             ------eEEEEeeCCCCChhhhhhc--CCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC-CCCce
Q 003296          630 ------AYLFYEYAPKGTLFDVLHG--CLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS-LKEPQ  700 (833)
Q Consensus       630 ------~~lv~ey~~~g~L~~~l~~--~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~-~~~~k  700 (833)
                            .++||||+++ +|.+.+..  .....+++..+..++.|++.||.|||.+ +.+|+||||||+|||++. ++.+|
T Consensus        95 ~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~~~ivH~Dlkp~NIll~~~~~~~k  172 (360)
T 3e3p_A           95 DRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLP-SVNVCHRDIKPHNVLVNEADGTLK  172 (360)
T ss_dssp             CTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTST-TTCCBCSCCCGGGEEEETTTTEEE
T ss_pred             cccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCC-CCCeecCcCCHHHEEEeCCCCcEE
Confidence                  8899999986 55554432  1245689999999999999999999943 568999999999999996 89999


Q ss_pred             eccceeeeeeCCCCCCCccccccccccccccccccCCc-ccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccc
Q 003296          701 IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMR-VTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQ  779 (833)
Q Consensus       701 i~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~  779 (833)
                      |+|||+++.......   .....||+.|+|||++.+.. ++.++|||||||++|||++|+.||.+...............
T Consensus       173 l~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~  249 (360)
T 3e3p_A          173 LCDFGSAKKLSPSEP---NVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLG  249 (360)
T ss_dssp             ECCCTTCBCCCTTSC---CCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHC
T ss_pred             EeeCCCceecCCCCC---cccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHHHcC
Confidence            999999987654332   24567999999999986544 89999999999999999999999986554332221111000


Q ss_pred             cccccc---ccc-----cc---cCCch------hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          780 DKLDHI---LDF-----NV---SRTSL------AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       780 ~~~~~~---~~~-----~~---~~~~~------~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ....+.   +++     ..   .....      .....+.++.+++.+||+.||++|||+.|+++|
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  315 (360)
T 3e3p_A          250 CPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCH  315 (360)
T ss_dssp             CCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             CCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcC
Confidence            000000   000     00   00000      000135678999999999999999999999875

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=4.5e-40  Score=351.06  Aligned_cols=254  Identities=21%  Similarity=0.317  Sum_probs=193.5

Q ss_pred             HHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec-----
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA-----  626 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~-----  626 (833)
                      ..++|+..+.||+|+||.||+|+. .+|+.||||++... .    ...+.+.+|++++++++||||++++++|.+     
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   78 (303)
T 1zy4_A            4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-E----EKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFV   78 (303)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-H----HHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCC
T ss_pred             ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-H----HHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchh
Confidence            457899999999999999999997 48999999999422 1    224679999999999999999999999865     


Q ss_pred             --------CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC
Q 003296          627 --------SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE  698 (833)
Q Consensus       627 --------~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~  698 (833)
                              .+..|+||||+++|+|.++++.. ...+++.+++.++.|+++||+|||   +.+|+||||||+||+++.++.
T Consensus        79 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dlkp~Nil~~~~~~  154 (303)
T 1zy4_A           79 KPMTAVKKKSTLFIQMEYCENGTLYDLIHSE-NLNQQRDEYWRLFRQILEALSYIH---SQGIIHRDLKPMNIFIDESRN  154 (303)
T ss_dssp             C------CEEEEEEEEECCCSCBHHHHHHHS-CGGGCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSC
T ss_pred             hhhcccccCCceEEEEecCCCCCHHHhhhcc-ccccchHHHHHHHHHHHHHHHHHH---hCCeecccCCHHhEEEcCCCC
Confidence                    35689999999999999999853 345788999999999999999999   778999999999999999999


Q ss_pred             ceeccceeeeeeCCCCC------------CCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCC
Q 003296          699 PQIGDIELCKVIDPSKS------------TGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQG  765 (833)
Q Consensus       699 ~ki~dfgl~~~~~~~~~------------~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~  765 (833)
                      +|++|||+++.......            ........||+.|+|||++.+. .++.++|||||||++|||++   ||...
T Consensus       155 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~  231 (303)
T 1zy4_A          155 VKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTG  231 (303)
T ss_dssp             EEECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSH
T ss_pred             EEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCc
Confidence            99999999976542210            1122346799999999998754 68999999999999999998   55432


Q ss_pred             ccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          766 NELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ................    ..+...      ...+..+.+++.+||+.||++|||++|++++
T Consensus       232 ~~~~~~~~~~~~~~~~----~~~~~~------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h  284 (303)
T 1zy4_A          232 MERVNILKKLRSVSIE----FPPDFD------DNKMKVEKKIIRLLIDHDPNKRPGARTLLNS  284 (303)
T ss_dssp             HHHHHHHHHHHSTTCC----CCTTCC------TTTSHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             hhHHHHHHhccccccc----cCcccc------ccchHHHHHHHHHHHhcCcccCcCHHHHhCC
Confidence            2222222211111011    011111      1223467899999999999999999999875

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=1.5e-40  Score=363.08  Aligned_cols=264  Identities=17%  Similarity=0.174  Sum_probs=199.9

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC-----C
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS-----D  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~-----~  628 (833)
                      ++|...+.||+|+||.||+|... +|+.||||++.....   ......+.+|++++++++|||||++++++...     .
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   87 (353)
T 2b9h_A           11 SDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDK---PLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFN   87 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSS---HHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCC
T ss_pred             cceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeeccccc---chHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccc
Confidence            56778899999999999999974 799999999942211   12345788999999999999999999998764     6


Q ss_pred             ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeee
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK  708 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~  708 (833)
                      ..++||||++ |+|.+++..   ..+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||+++
T Consensus        88 ~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~  160 (353)
T 2b9h_A           88 EVYIIQELMQ-TDLHRVIST---QMLSDDHIQYFIYQTLRAVKVLH---GSNVIHRDLKPSNLLINSNCDLKVCDFGLAR  160 (353)
T ss_dssp             CEEEEECCCS-EEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             eEEEEEeccC-ccHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEcCCCcEEEEeccccc
Confidence            7899999997 699999875   35899999999999999999999   7899999999999999999999999999998


Q ss_pred             eeCCCCCCC--------ccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccc
Q 003296          709 VIDPSKSTG--------SLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQ  779 (833)
Q Consensus       709 ~~~~~~~~~--------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~  779 (833)
                      .........        .....+||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+..............+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~  240 (353)
T 2b9h_A          161 IIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIG  240 (353)
T ss_dssp             ECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHC
T ss_pred             ccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhC
Confidence            764322110        1234579999999998764 6789999999999999999999999986554332221111000


Q ss_pred             cc-----ccccccc----------cccCC--chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          780 DK-----LDHILDF----------NVSRT--SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       780 ~~-----~~~~~~~----------~~~~~--~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ..     ...+...          .....  .......+.++.+++.+||+.||++|||++|+++|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  306 (353)
T 2b9h_A          241 TPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEH  306 (353)
T ss_dssp             CCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             CCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence            00     0000000          00000  00011234578899999999999999999999875

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=2.4e-40  Score=387.73  Aligned_cols=256  Identities=19%  Similarity=0.260  Sum_probs=201.6

Q ss_pred             HHhcCCccccccCcccEEEEEEcC----CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMP----SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS  629 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~  629 (833)
                      .+.|+..+.||+|+||.||+|...    .+..||||++....   .....+.|.+|+.++++++|||||++++++. ++.
T Consensus       389 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~  464 (656)
T 2j0j_A          389 RERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCT---SDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENP  464 (656)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTT---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSS
T ss_pred             cccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccC---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCc
Confidence            356777899999999999999863    35679999984221   1223468999999999999999999999985 567


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                      .|+||||+++|+|.++++.. ...+++..+..++.|+++||+|||   +.+|+||||||+|||++.++.+||+|||+++.
T Consensus       465 ~~lv~E~~~~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDikp~NILl~~~~~vkL~DFG~a~~  540 (656)
T 2j0j_A          465 VWIIMELCTLGELRSFLQVR-KFSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRY  540 (656)
T ss_dssp             CEEEEECCTTCBHHHHHHHT-TTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCCCCS
T ss_pred             eEEEEEcCCCCcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccchHhEEEeCCCCEEEEecCCCee
Confidence            89999999999999999853 346899999999999999999999   77999999999999999999999999999987


Q ss_pred             eCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ....... ......||+.|||||++.+..++.++|||||||++|||++ |+.||.+..... ........ ...      
T Consensus       541 ~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~-~~~~i~~~-~~~------  611 (656)
T 2j0j_A          541 MEDSTYY-KASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND-VIGRIENG-ERL------  611 (656)
T ss_dssp             CCC-----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH-HHHHHHHT-CCC------
T ss_pred             cCCCcce-eccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHH-HHHHHHcC-CCC------
Confidence            6433221 2234567889999999988899999999999999999997 999997544322 11111111 100      


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ...      ...+.++.+++.+||+.||++|||+.|++++|+++
T Consensus       612 ~~~------~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~i  649 (656)
T 2j0j_A          612 PMP------PNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI  649 (656)
T ss_dssp             CCC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CCC------ccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence            011      12235678999999999999999999999999875

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.4e-38  Score=357.87  Aligned_cols=345  Identities=19%  Similarity=0.204  Sum_probs=197.2

Q ss_pred             CCCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEE
Q 003296            5 GGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELV   84 (833)
Q Consensus         5 ~~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~   84 (833)
                      +++++|+.|++++|.++++|.|..+++|++|+|++|+|+++.   |+.+++|++|+|++|+|+++ |  |+.+++|++|+
T Consensus        39 ~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~  112 (457)
T 3bz5_A           39 EQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN  112 (457)
T ss_dssp             HHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred             hHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence            345667777777777777766667777777777777776642   66677777777777777664 2  66677777777


Q ss_pred             ccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccc
Q 003296           85 LSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSG  164 (833)
Q Consensus        85 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~  164 (833)
                      |++|++++. |  ++.+++|++|++++|+++++   .++.+++|++|++++|...+.+  .+..+++|+.|++++|++++
T Consensus       113 L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~  184 (457)
T 3bz5_A          113 CDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE  184 (457)
T ss_dssp             CCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred             CCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence            777777653 3  66677777777777777653   2666777777777777444333  34555555555555555543


Q ss_pred             cCChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCC
Q 003296          165 SVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEK  244 (833)
Q Consensus       165 ~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~  244 (833)
                       +|-.-.+.|+.|++++|++++.   .+..+++|++|++++|+++                      + +|   +..+++
T Consensus       185 -l~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~----------------------~-ip---~~~l~~  234 (457)
T 3bz5_A          185 -LDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT----------------------E-ID---VTPLTQ  234 (457)
T ss_dssp             -CCCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCS----------------------C-CC---CTTCTT
T ss_pred             -eccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccc----------------------c-cC---ccccCC
Confidence             2222233344444444444432   2344444444444444444                      3 22   445556


Q ss_pred             CCEEECCCCCCCCCCCccccCCCCCcEEEc----------cCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCC
Q 003296          245 LTYLELDNNSFTGMIPQQLGSCRSLTLLNL----------AQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQL  314 (833)
Q Consensus       245 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L----------~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  314 (833)
                      |++|++++|++++..+   +.+++|+.|++          ++|.+.+.+|  ++.+++|+.|++++|...+.+|.   ..
T Consensus       235 L~~L~l~~N~l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~  306 (457)
T 3bz5_A          235 LTYFDCSVNPLTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QA  306 (457)
T ss_dssp             CSEEECCSSCCSCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TT
T ss_pred             CCEEEeeCCcCCCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CC
Confidence            6666666666655432   33444444444          4444433333  23444455555555544444442   12


Q ss_pred             CcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCccCCCCcccccceeeccc
Q 003296          315 KLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSS  394 (833)
Q Consensus       315 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~  394 (833)
                      .+|+.|+++             ++++|+.|++++|++++. +  +.++++|+.|++++|++++ ++.     ...|++++
T Consensus       307 ~~L~~L~l~-------------~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-l~~-----L~~L~l~~  364 (457)
T 3bz5_A          307 AGITELDLS-------------QNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-FSS-----VGKIPALN  364 (457)
T ss_dssp             CCCSCCCCT-------------TCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-CTT-----GGGSSGGG
T ss_pred             CcceEechh-------------hcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-ccc-----cccccccC
Confidence            333333333             336788888888888874 2  7788888888888888875 221     12355666


Q ss_pred             cccccchhhhhccCCCCCEEecccCcCccccchh
Q 003296          395 NLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQL  428 (833)
Q Consensus       395 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  428 (833)
                      |.++|.     ..+..|+.+++++|+++|.+|..
T Consensus       365 n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          365 NNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             TSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             CcEEec-----ceeeecCccccccCcEEEEcChh
Confidence            666654     23344555666666666665543

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=3.2e-40  Score=354.09  Aligned_cols=253  Identities=18%  Similarity=0.251  Sum_probs=195.5

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC--CCCcccceEEEecCCceEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS--NSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~--H~niv~~~~~~~~~~~~~l  632 (833)
                      ..|+..+.||+|+||.||+|...+|+.||||++.....  .....+.|.+|++++++++  |||||++++++..++..++
T Consensus        28 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l  105 (313)
T 3cek_A           28 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA--DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM  105 (313)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSC--CHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEE
T ss_pred             ceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccc--cccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEE
Confidence            45778899999999999999998899999999843211  1223467999999999997  5999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      ||| +.+|+|.+++..  ...+++.++..++.|+++||+|||   +.+|+||||||+||++++ +.+||+|||+++....
T Consensus       106 v~e-~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~  178 (313)
T 3cek_A          106 VME-CGNIDLNSWLKK--KKSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIVD-GMLKLIDFGIANQMQP  178 (313)
T ss_dssp             EEC-CCSEEHHHHHHH--CSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEET-TEEEECCCSSSCC---
T ss_pred             EEe-cCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcccEEEEC-CeEEEeeccccccccC
Confidence            999 568899999986  346899999999999999999999   779999999999999964 8999999999987654


Q ss_pred             CCCCCccccccccccccccccccC-----------CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccc
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYT-----------MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDK  781 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~  781 (833)
                      ...........||+.|+|||++.+           ..++.++|||||||++|||++|+.||...................
T Consensus       179 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~  258 (313)
T 3cek_A          179 DTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHE  258 (313)
T ss_dssp             -----------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSC
T ss_pred             ccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccc
Confidence            332222235679999999999865           468899999999999999999999997654433222221111000


Q ss_pred             ccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          782 LDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       782 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                            ......      ...++.+++.+||+.||++|||+.|++++
T Consensus       259 ------~~~~~~------~~~~l~~li~~~l~~dp~~Rps~~ell~h  293 (313)
T 3cek_A          259 ------IEFPDI------PEKDLQDVLKCCLKRDPKQRISIPELLAH  293 (313)
T ss_dssp             ------CCCCCC------SCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             ------cCCccc------chHHHHHHHHHHccCCcccCcCHHHHhcC
Confidence                  011111      12467889999999999999999999875

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=3.3e-40  Score=355.12  Aligned_cols=263  Identities=22%  Similarity=0.247  Sum_probs=192.8

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEe--------
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVL--------  625 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~--------  625 (833)
                      +.|...+.||+|+||.||+|... +|+.||||++....    ....+++.+|++++++++|||||++++++.        
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   86 (320)
T 2i6l_A           11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTD----PQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTD   86 (320)
T ss_dssp             TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCS----HHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC
T ss_pred             CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCC----hHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccc
Confidence            45778899999999999999975 69999999984322    123567999999999999999999999884        


Q ss_pred             ------cCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC-CCCC
Q 003296          626 ------ASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK-SLKE  698 (833)
Q Consensus       626 ------~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~-~~~~  698 (833)
                            ..+..++||||++ |+|.+++..   ..+++..+..++.|+++||+|||   +.+|+||||||+||+++ +++.
T Consensus        87 ~~~~~~~~~~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~  159 (320)
T 2i6l_A           87 DVGSLTELNSVYIVQEYME-TDLANVLEQ---GPLLEEHARLFMYQLLRGLKYIH---SANVLHRDLKPANLFINTEDLV  159 (320)
T ss_dssp             ----CCSCSEEEEEEECCS-EEHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTTE
T ss_pred             ccccccccCceeEEeeccC-CCHHHHhhc---CCccHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCe
Confidence                  3467899999998 699999974   46899999999999999999999   78999999999999997 5679


Q ss_pred             ceeccceeeeeeCCCCC-CCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhh
Q 003296          699 PQIGDIELCKVIDPSKS-TGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNS  776 (833)
Q Consensus       699 ~ki~dfgl~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~  776 (833)
                      +||+|||+++....... ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+............
T Consensus       160 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~  239 (320)
T 2i6l_A          160 LKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILE  239 (320)
T ss_dssp             EEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             EEEccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence            99999999987643211 112234578999999998765 6789999999999999999999999986554322211110


Q ss_pred             ccccc-----------ccccccccccCCc----hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          777 AQQDK-----------LDHILDFNVSRTS----LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       777 ~~~~~-----------~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .....           ....+........    ......+.++.+++.+||+.||++|||++|+++|
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  306 (320)
T 2i6l_A          240 SIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSH  306 (320)
T ss_dssp             HSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             hcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCC
Confidence            00000           0000000000000    0011234678899999999999999999999875

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=2.8e-40  Score=357.78  Aligned_cols=252  Identities=16%  Similarity=0.106  Sum_probs=173.3

Q ss_pred             HHhcCCc-cccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHH-HHHhcCCCCCcccceEEEec----
Q 003296          554 EAVANPL-NVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKEL-EVLGKLSNSNVMTPLAYVLA----  626 (833)
Q Consensus       554 ~~~~~~~-~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~-~~l~~l~H~niv~~~~~~~~----  626 (833)
                      .++|... ++||+|+||.||+|... +|+.||||++...         ....+|+ ..++.++||||+++++++..    
T Consensus        27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---------~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~   97 (336)
T 3fhr_A           27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS---------PKARQEVDHHWQASGGPHIVCILDVYENMHHG   97 (336)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS---------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETT
T ss_pred             cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc---------HHHHHHHHHHHHhcCCCChHHHHHHHhhccCC
Confidence            3567764 57999999999999975 7999999999421         1223333 34566799999999999976    


Q ss_pred             CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC---CCCceecc
Q 003296          627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS---LKEPQIGD  703 (833)
Q Consensus       627 ~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~---~~~~ki~d  703 (833)
                      ....++|||||++|+|.+++.......+++.++..++.|++.||+|||   ..+|+||||||+||+++.   ++.+||+|
T Consensus        98 ~~~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH---~~~ivH~dlkp~NIll~~~~~~~~~kl~D  174 (336)
T 3fhr_A           98 KRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLH---SHNIAHRDVKPENLLYTSKEKDAVLKLTD  174 (336)
T ss_dssp             EEEEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECC
T ss_pred             CceEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEEecCCCceEEEec
Confidence            445899999999999999998755557999999999999999999999   779999999999999976   45599999


Q ss_pred             ceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccc
Q 003296          704 IELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLD  783 (833)
Q Consensus       704 fgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~  783 (833)
                      ||+++......    .....||+.|+|||++.+..++.++|||||||++|||++|+.||...........       ...
T Consensus       175 fg~~~~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~-------~~~  243 (336)
T 3fhr_A          175 FGFAKETTQNA----LQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPG-------MKR  243 (336)
T ss_dssp             CTTCEEC--------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC---------------------
T ss_pred             cccceeccccc----cccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhh-------HHH
Confidence            99998764322    2356789999999999888999999999999999999999999974332110000       000


Q ss_pred             ccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          784 HILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       784 ~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .+...............+.++.+++.+||+.||++|||++|++++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  288 (336)
T 3fhr_A          244 RIRLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMNH  288 (336)
T ss_dssp             -------CCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             hhhccccccCchhhccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            000000000011111234578899999999999999999999985

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=3.9e-40  Score=359.67  Aligned_cols=259  Identities=18%  Similarity=0.167  Sum_probs=196.1

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc----
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS----  629 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~----  629 (833)
                      +.|...+.||+|+||.||+|.. .+|+.||||++....  ......+.+.+|+.++++++|||||++++++...+.    
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  101 (353)
T 3coi_A           24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPF--QSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF  101 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTT--SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred             ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccc--cchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccc
Confidence            3577788999999999999997 479999999994321  112234678999999999999999999999987654    


Q ss_pred             --eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          630 --AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       630 --~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                        .|+||||++ |+|.+++..    .+++.++..++.|++.||+|||   +.+|+||||||+||+++.++.+||+|||++
T Consensus       102 ~~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~al~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~  173 (353)
T 3coi_A          102 YDFYLVMPFMQ-TDLQKIMGL----KFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLA  173 (353)
T ss_dssp             CCCEEEEECCS-EEGGGTTTS----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTCCEEECSTTCT
T ss_pred             eeEEEEecccc-CCHHHHhcC----CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEeECCCCcEEEeecccc
Confidence              499999997 699888753    4899999999999999999999   779999999999999999999999999999


Q ss_pred             eeeCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccc----c
Q 003296          708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDK----L  782 (833)
Q Consensus       708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~----~  782 (833)
                      +.....     .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+......+.......+..    .
T Consensus       174 ~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~  248 (353)
T 3coi_A          174 RHADAE-----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFV  248 (353)
T ss_dssp             TC-------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHH
T ss_pred             cCCCCC-----ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHH
Confidence            765322     234679999999999876 678999999999999999999999998655432221111100000    0


Q ss_pred             ccccc-----------cccc-CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          783 DHILD-----------FNVS-RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       783 ~~~~~-----------~~~~-~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ..+.+           .... .........+.++.+++.+||+.||++|||++|+++|
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~h  306 (353)
T 3coi_A          249 QKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH  306 (353)
T ss_dssp             TTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             HHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence            00000           0000 0000011234578899999999999999999999875

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=5e-40  Score=368.08  Aligned_cols=251  Identities=22%  Similarity=0.242  Sum_probs=186.9

Q ss_pred             cCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEEEEe
Q 003296          557 ANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      |...++||+|+||+||.+...+|+.||||++...       ..+.+.+|+++++++ +|||||++++++.+++..|+|||
T Consensus        17 ~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~-------~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E   89 (434)
T 2rio_A           17 VVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID-------FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALE   89 (434)
T ss_dssp             EEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG-------GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEEC
T ss_pred             eeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH-------HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEe
Confidence            3445789999999998776678999999998421       135678999999986 89999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCC-----CCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC-------------C
Q 003296          636 YAPKGTLFDVLHGCLENA-----LDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL-------------K  697 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~-----l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~-------------~  697 (833)
                      ||+ |+|.+++.......     .++..+..++.|++.||+|||   +.+|+||||||+|||++.+             +
T Consensus        90 ~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~  165 (434)
T 2rio_A           90 LCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLH---SLKIIHRDLKPQNILVSTSSRFTADQQTGAENL  165 (434)
T ss_dssp             CCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEECCHHHHSCCTTCCCSC
T ss_pred             cCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCcccccccccCCCce
Confidence            995 69999998642211     133346789999999999999   7899999999999999754             4


Q ss_pred             CceeccceeeeeeCCCCCCC--ccccccccccccccccccC-------CcccccCcchhhHHHHHHHHh-CCCcccCCcc
Q 003296          698 EPQIGDIELCKVIDPSKSTG--SLSTVAGSVGYIPPEYAYT-------MRVTMAGNVYSFGVILLELLT-GKTAVNQGNE  767 (833)
Q Consensus       698 ~~ki~dfgl~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~  767 (833)
                      .+||+|||+++.........  .....+||++|+|||++.+       ..++.++|||||||++|||+| |+.||.+...
T Consensus       166 ~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~  245 (434)
T 2rio_A          166 RILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYS  245 (434)
T ss_dssp             EEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTT
T ss_pred             EEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchh
Confidence            89999999999875433211  1234689999999999865       568999999999999999999 9999975443


Q ss_pred             HHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          768 LAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ....+......   ....     .  .......+.++.+++.+||+.||++|||+.||++|
T Consensus       246 ~~~~i~~~~~~---~~~~-----~--~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h  296 (434)
T 2rio_A          246 RESNIIRGIFS---LDEM-----K--CLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLRH  296 (434)
T ss_dssp             HHHHHHHTCCC---CCCC-----T--TCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             hHHHHhcCCCC---cccc-----c--ccccccchHHHHHHHHHHhhCChhhCCCHHHHHhC
Confidence            32211111100   1100     0  01123456788999999999999999999999874

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=7.7e-40  Score=357.73  Aligned_cols=260  Identities=15%  Similarity=0.179  Sum_probs=201.0

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CC-ceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCC------cccceEEEec
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SG-MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSN------VMTPLAYVLA  626 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~-~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~n------iv~~~~~~~~  626 (833)
                      +.|+..+.||+|+||.||+|... ++ +.||||+++...     ...+.+.+|++++++++|++      ++.+++++..
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~   93 (355)
T 2eu9_A           19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVG-----KYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNF   93 (355)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCH-----HHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEE
T ss_pred             ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccc-----cchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeee
Confidence            46888899999999999999974 44 789999994221     12467889999999998766      8999999999


Q ss_pred             CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceee-------------
Q 003296          627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFL-------------  693 (833)
Q Consensus       627 ~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill-------------  693 (833)
                      .+..++||||+ +|++.+++.......+++.++..++.|++.||+|||   +.+|+||||||+|||+             
T Consensus        94 ~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~  169 (355)
T 2eu9_A           94 HGHMCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLH---ENQLTHTDLKPENILFVNSEFETLYNEHK  169 (355)
T ss_dssp             TTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEESCCCEEEEECCC-
T ss_pred             CCeEEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEecccccccccccc
Confidence            99999999999 678888887654457999999999999999999999   7899999999999999             


Q ss_pred             ------CCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc
Q 003296          694 ------KSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE  767 (833)
Q Consensus       694 ------~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~  767 (833)
                            +.++.+||+|||+++......     ....||+.|+|||++.+..++.++|||||||++|||++|+.||.....
T Consensus       170 ~~~~~~~~~~~~kl~Dfg~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~  244 (355)
T 2eu9_A          170 SCEEKSVKNTSIRVADFGSATFDHEHH-----TTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHEN  244 (355)
T ss_dssp             CCCEEEESCCCEEECCCTTCEETTSCC-----CSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             cccccccCCCcEEEeecCccccccccc-----cCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCH
Confidence                  567899999999998754322     346899999999999988999999999999999999999999986544


Q ss_pred             HHHHHHHhhcccccccccc----------ccc--ccC-----------------CchhHHHHHHHHHHHHHhccCCCCCC
Q 003296          768 LAKWVLRNSAQQDKLDHIL----------DFN--VSR-----------------TSLAVRSQMLTVLKVAVACVSVSPEA  818 (833)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~----------~~~--~~~-----------------~~~~~~~~~~~~~~l~~~cl~~dP~~  818 (833)
                      .................+.          ...  ...                 ..........++.+++.+||+.||++
T Consensus       245 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~  324 (355)
T 2eu9_A          245 REHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQ  324 (355)
T ss_dssp             HHHHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTT
T ss_pred             HHHHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhh
Confidence            3222111100000000000          000  000                 00001123557889999999999999


Q ss_pred             CCCHHHHHHH
Q 003296          819 RPKMKSVLRM  828 (833)
Q Consensus       819 Rps~~evl~~  828 (833)
                      |||++|+++|
T Consensus       325 Rpt~~e~l~h  334 (355)
T 2eu9_A          325 RITLAEALLH  334 (355)
T ss_dssp             SCCHHHHTTS
T ss_pred             CcCHHHHhcC
Confidence            9999999864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.4e-38  Score=360.39  Aligned_cols=323  Identities=20%  Similarity=0.195  Sum_probs=269.7

Q ss_pred             CCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCc
Q 003296           10 LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNA   89 (833)
Q Consensus        10 L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~   89 (833)
                      -+.++++++.++.+|. .-.+++++|||++|+|+++.+..|.++++|++|+|++|.|+++.|..|.++++|++|+|++|.
T Consensus        13 ~~~v~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             TTEEECCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEeCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            4689999999999986 335789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChh
Q 003296           90 FHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGG  169 (833)
Q Consensus        90 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~  169 (833)
                      ++.+.+..|.++++|++|+|++|++++..|..|.++++|++|+|++|.+++..+..|..+++|                 
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-----------------  154 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL-----------------  154 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTC-----------------
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCC-----------------
Confidence            998888889999999999999999999999999999999999999999998888888777664                 


Q ss_pred             hhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEE
Q 003296          170 ITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLE  249 (833)
Q Consensus       170 ~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~  249 (833)
                           +.|+|++|++.+..+..+..+++|+.|+|++|.+.+.                       ++..|..+++|++|+
T Consensus       155 -----~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~-----------------------~~~~~~~l~~L~~L~  206 (477)
T 2id5_A          155 -----EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI-----------------------RDYSFKRLYRLKVLE  206 (477)
T ss_dssp             -----CEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE-----------------------CTTCSCSCTTCCEEE
T ss_pred             -----CEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe-----------------------ChhhcccCcccceee
Confidence                 4555555555555555566777788888888776532                       233456677788888


Q ss_pred             CCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcc
Q 003296          250 LDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSG  329 (833)
Q Consensus       250 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  329 (833)
                      +++|.+.+.+|.......+|+.|+|++|.+++..+..+..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++
T Consensus       207 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  286 (477)
T 2id5_A          207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV  286 (477)
T ss_dssp             EECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE
T ss_pred             CCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccce
Confidence            88777766666665566688888888888876665678888888888888888887777788888888888888888888


Q ss_pred             cCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCcc
Q 003296          330 SIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGT  378 (833)
Q Consensus       330 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  378 (833)
                      ..|..|.++++|+.|+|++|++++..+..|..+++|++|+|++|++.+.
T Consensus       287 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          287 VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             ECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             ECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            8888888888888888888888877777888888888888888887643

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=5e-40  Score=366.81  Aligned_cols=249  Identities=20%  Similarity=0.240  Sum_probs=186.0

Q ss_pred             hcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      .|...++||+|+||+||.....+|+.||||++...       ....+.+|+++++++ +|||||++++++.+.+..|+||
T Consensus        25 ~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~-------~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~   97 (432)
T 3p23_A           25 SFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPE-------CFSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAI   97 (432)
T ss_dssp             EEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTT-------TEEECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             EEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHH-------HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEE
Confidence            46778899999999966555568999999999421       123467899999999 7999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC-----CCCceeccceeeee
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS-----LKEPQIGDIELCKV  709 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~-----~~~~ki~dfgl~~~  709 (833)
                      |||+ |+|.+++.... ....+..+..++.|+++||+|||   +.+|+||||||+|||++.     ...+||+|||+|+.
T Consensus        98 E~~~-g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~  172 (432)
T 3p23_A           98 ELCA-ATLQEYVEQKD-FAHLGLEPITLLQQTTSGLAHLH---SLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKK  172 (432)
T ss_dssp             ECCS-EEHHHHHHSSS-CCCCSSCHHHHHHHHHHHHHHHH---HTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEEC
T ss_pred             ECCC-CCHHHHHHhcC-CCccchhHHHHHHHHHHHHHHHH---HCcCEeCCCCHHHEEEecCCCCCceeEEEecccceee
Confidence            9996 69999998643 23455566789999999999999   778999999999999953     23577999999987


Q ss_pred             eCCCCCC-Ccccccccccccccccccc---CCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccc
Q 003296          710 IDPSKST-GSLSTVAGSVGYIPPEYAY---TMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDH  784 (833)
Q Consensus       710 ~~~~~~~-~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~  784 (833)
                      ....... ......+||++|+|||++.   ...++.++|||||||++|||+| |+.||...........  ... .... 
T Consensus       173 ~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~~~~--~~~-~~~~-  248 (432)
T 3p23_A          173 LAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANIL--LGA-CSLD-  248 (432)
T ss_dssp             C------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHHHHH--TTC-CCCT-
T ss_pred             ccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHHHHH--hcc-CCcc-
Confidence            6533211 1234578999999999987   4567889999999999999999 9999964433221111  110 0000 


Q ss_pred             cccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          785 ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       785 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .    ...    .......+.+++.+||+.||++|||+.||++|
T Consensus       249 ~----~~~----~~~~~~~~~~li~~~L~~dP~~Rps~~evl~h  284 (432)
T 3p23_A          249 C----LHP----EKHEDVIARELIEKMIAMDPQKRPSAKHVLKH  284 (432)
T ss_dssp             T----SCT----TCHHHHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             c----cCc----cccccHHHHHHHHHHHhCCHhhCCCHHHHHhC
Confidence            0    000    11234567899999999999999999999864

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=5.5e-40  Score=361.58  Aligned_cols=260  Identities=13%  Similarity=0.176  Sum_probs=198.6

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-----------CCCcccceE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-----------NSNVMTPLA  622 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-----------H~niv~~~~  622 (833)
                      +.|...+.||+|+||.||+|+. .+|+.||||++... .    ...+.+.+|++++++++           ||||+++++
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~----~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~   93 (373)
T 1q8y_A           19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-K----VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLD   93 (373)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-H----HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCE
T ss_pred             CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-c----cchhhhhHHHHHHHHhhcccccchhccccchHHHHHH
Confidence            4577889999999999999996 58999999999422 1    12467889999999887           899999999


Q ss_pred             EEecCC----ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCC-CeeecCCCccceeeC---
Q 003296          623 YVLASD----SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSN-PILLLDLSTRNIFLK---  694 (833)
Q Consensus       623 ~~~~~~----~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~-~iiHrdlk~~Nill~---  694 (833)
                      ++...+    ..++||||+ +|+|.+++.......+++..+..++.|++.||+|||   +. +|+||||||+|||++   
T Consensus        94 ~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~~ivH~Dikp~NIll~~~~  169 (373)
T 1q8y_A           94 HFNHKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMH---RRCGIIHTDIKPENVLMEIVD  169 (373)
T ss_dssp             EEEEEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHH---HTTCEECSCCSGGGEEEEEEE
T ss_pred             HhhccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHH---hcCCEEecCCChHHeEEeccC
Confidence            998654    789999999 889999998755567999999999999999999999   66 899999999999994   


Q ss_pred             ---CCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccH---
Q 003296          695 ---SLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNEL---  768 (833)
Q Consensus       695 ---~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~---  768 (833)
                         ..+.+||+|||+++......     ....||+.|+|||++.+..++.++|||||||++|||+||+.||......   
T Consensus       170 ~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~  244 (373)
T 1q8y_A          170 SPENLIQIKIADLGNACWYDEHY-----TNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYT  244 (373)
T ss_dssp             TTTTEEEEEECCCTTCEETTBCC-----CSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------
T ss_pred             CCcCcceEEEcccccccccCCCC-----CCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccC
Confidence               44579999999998764322     3457999999999999989999999999999999999999999743210   


Q ss_pred             --HHHHHHhhc-ccc--------------------cccccccccc-------cCCchhHHHHHHHHHHHHHhccCCCCCC
Q 003296          769 --AKWVLRNSA-QQD--------------------KLDHILDFNV-------SRTSLAVRSQMLTVLKVAVACVSVSPEA  818 (833)
Q Consensus       769 --~~~~~~~~~-~~~--------------------~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~cl~~dP~~  818 (833)
                        ......... .+.                    ....+.....       ............++.+++.+||+.||++
T Consensus       245 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~  324 (373)
T 1q8y_A          245 KDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRK  324 (373)
T ss_dssp             CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTT
T ss_pred             ChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccc
Confidence              111100000 000                    0000000000       0000111345678899999999999999


Q ss_pred             CCCHHHHHHH
Q 003296          819 RPKMKSVLRM  828 (833)
Q Consensus       819 Rps~~evl~~  828 (833)
                      |||++|+++|
T Consensus       325 Rpt~~ell~h  334 (373)
T 1q8y_A          325 RADAGGLVNH  334 (373)
T ss_dssp             CBCHHHHHTC
T ss_pred             cCCHHHHhhC
Confidence            9999999875

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=6.1e-40  Score=354.21  Aligned_cols=255  Identities=17%  Similarity=0.235  Sum_probs=177.3

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHH-HHhcCCCCCcccceEEEecCCceEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELE-VLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~-~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      ++|+..+.||+|+||.||+|.. .+|+.||||++.....   .....++.+|+. +++.++|||||++++++..++..++
T Consensus        22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~l   98 (327)
T 3aln_A           22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVD---EKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWI   98 (327)
T ss_dssp             CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCC---HHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEE
T ss_pred             HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccC---chHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEE
Confidence            4577788999999999999997 4799999999953211   112345666766 7788899999999999999999999


Q ss_pred             EEeeCCCCChhhhhhc---CCCCCCCHHHHHHHHHHHHHHHHhhhcCCCC-CeeecCCCccceeeCCCCCceeccceeee
Q 003296          633 FYEYAPKGTLFDVLHG---CLENALDWASRYSIAVGVAQGLAFLHGFTSN-PILLLDLSTRNIFLKSLKEPQIGDIELCK  708 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~---~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~-~iiHrdlk~~Nill~~~~~~ki~dfgl~~  708 (833)
                      ||||+++ +|.+++..   .....+++..+..++.|++.||.|||   .. +|+||||||+||+++.++.+||+|||+++
T Consensus        99 v~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~  174 (327)
T 3aln_A           99 CMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLK---ENLKIIHRDIKPSNILLDRSGNIKLCDFGISG  174 (327)
T ss_dssp             EECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHH---HHHSCCCSCCCGGGEEEETTTEEEECCCSSSC
T ss_pred             EEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHh---ccCCEeECCCCHHHEEEcCCCCEEEccCCCce
Confidence            9999985 88877752   22456899999999999999999999   66 89999999999999999999999999998


Q ss_pred             eeCCCCCCCccccccccccccccccc----cCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccc
Q 003296          709 VIDPSKSTGSLSTVAGSVGYIPPEYA----YTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDH  784 (833)
Q Consensus       709 ~~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~  784 (833)
                      ......   ......||+.|+|||++    .+..++.++|||||||++|||++|+.||.+.............  ..   
T Consensus       175 ~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~--~~---  246 (327)
T 3aln_A          175 QLVDSI---AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVK--GD---  246 (327)
T ss_dssp             C---------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-------CCCCC--SC---
T ss_pred             eccccc---ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHHHHHHHhc--CC---
Confidence            764332   12345799999999998    4566899999999999999999999999754332211110000  00   


Q ss_pred             cccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          785 ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       785 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        .+.+...  .......++.+++.+||+.||++|||+.|++++
T Consensus       247 --~~~~~~~--~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h  286 (327)
T 3aln_A          247 --PPQLSNS--EEREFSPSFINFVNLCLTKDESKRPKYKELLKH  286 (327)
T ss_dssp             --CCCCCCC--SSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             --CCCCCCc--ccccCCHHHHHHHHHHhhCChhhCcCHHHHHhC
Confidence              0001000  001224578899999999999999999999764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.3e-37  Score=350.66  Aligned_cols=348  Identities=27%  Similarity=0.382  Sum_probs=275.5

Q ss_pred             cCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 003296           27 NGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTL  106 (833)
Q Consensus        27 ~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  106 (833)
                      ..+++|+.|++++|.++.+.  .|..+++|++|+|++|.++++.|  |..+++|++|+|++|.+++..+  +.++++|++
T Consensus        43 ~~l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHHHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             hHhccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            34678999999999998654  48889999999999999997655  8999999999999999987655  999999999


Q ss_pred             EeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccc
Q 003296          107 IDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLG  186 (833)
Q Consensus       107 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~  186 (833)
                      |+|++|.+++..+  |..+++|++|+|++|.+++. + .+..+++|+.|+++ |.+.+..+-.-.+.|+.|++++|++.+
T Consensus       117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (466)
T 1o6v_A          117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLKPLANLTTLERLDISSNKVSD  191 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             EECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCchhhccCCCCCEEECcCCcCCC
Confidence            9999999987644  89999999999999998864 2 47777777766664 333322222223334455555554443


Q ss_pred             cCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCC
Q 003296          187 VIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSC  266 (833)
Q Consensus       187 ~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l  266 (833)
                      .  ..+..++                      +|+.|++++|.+.+ +++  +..+++|+.|++++|++++.  ..+..+
T Consensus       192 ~--~~l~~l~----------------------~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l  242 (466)
T 1o6v_A          192 I--SVLAKLT----------------------NLESLIATNNQISD-ITP--LGILTNLDELSLNGNQLKDI--GTLASL  242 (466)
T ss_dssp             C--GGGGGCT----------------------TCSEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred             C--hhhccCC----------------------CCCEEEecCCcccc-ccc--ccccCCCCEEECCCCCcccc--hhhhcC
Confidence            2  1233444                      45555555554433 222  56789999999999999875  468899


Q ss_pred             CCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEc
Q 003296          267 RSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNL  346 (833)
Q Consensus       267 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  346 (833)
                      ++|+.|++++|.+.+..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|++.+..+  +..+++|+.|+|
T Consensus       243 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L  316 (466)
T 1o6v_A          243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL  316 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEEC
T ss_pred             CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEEC
Confidence            999999999999997665  8899999999999999997655  8899999999999999997655  889999999999


Q ss_pred             cCCccccccCccccCCCCCCEEEccCCcCCccCCCCcccccceeeccccccccchhhhhccCCCCCEEecccCcCccccc
Q 003296          347 RQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIP  426 (833)
Q Consensus       347 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  426 (833)
                      ++|++++..|  +..+++|++|++++|++++.                        ..+..+++|+.|++++|++++..|
T Consensus       317 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~------------------------~~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV------------------------SSLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             CSSCCSCCGG--GGGCTTCCEEECCSSCCCCC------------------------GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred             cCCcCCCchh--hccCccCCEeECCCCccCCc------------------------hhhccCCCCCEEeCCCCccCccch
Confidence            9999998776  78999999999999988742                        246677889999999999988777


Q ss_pred             hhccCCCCCCeeeCcCCccccc
Q 003296          427 QLLAQMPTLTQLLLTNNQLSGV  448 (833)
Q Consensus       427 ~~~~~l~~L~~L~ls~N~l~~~  448 (833)
                        +..+++|+.|++++|++++.
T Consensus       371 --~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          371 --LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             --GTTCTTCCEEECCCEEEECC
T ss_pred             --hhcCCCCCEEeccCCcccCC
Confidence              78888999999999988875

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=5.8e-40  Score=352.92  Aligned_cols=246  Identities=20%  Similarity=0.274  Sum_probs=199.9

Q ss_pred             HHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhh--hccChhHHHHHHHHHhcCC--CCCcccceEEEecC
Q 003296          553 MEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIF--QLGSHHKFDKELEVLGKLS--NSNVMTPLAYVLAS  627 (833)
Q Consensus       553 ~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~--~~~~~~~~~~E~~~l~~l~--H~niv~~~~~~~~~  627 (833)
                      ..+.|+..+.||+|+||.||+|+. .+|+.||||++.......  .....+.+.+|++++++++  ||||+++++++..+
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~  120 (320)
T 3a99_A           41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP  120 (320)
T ss_dssp             CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred             ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecC
Confidence            345688889999999999999986 578999999995322111  0123456889999999996  59999999999999


Q ss_pred             CceEEEEeeCCC-CChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC-CCCCceeccce
Q 003296          628 DSAYLFYEYAPK-GTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK-SLKEPQIGDIE  705 (833)
Q Consensus       628 ~~~~lv~ey~~~-g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~-~~~~~ki~dfg  705 (833)
                      +..++||||+.+ |+|.+++..  ...+++..+..++.|+++||+|||   +.+|+||||||+||+++ +++.+||+|||
T Consensus       121 ~~~~lv~e~~~~~~~L~~~l~~--~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg  195 (320)
T 3a99_A          121 DSFVLILERPEPVQDLFDFITE--RGALQEELARSFFWQVLEAVRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFG  195 (320)
T ss_dssp             SEEEEEEECCSSEEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCT
T ss_pred             CcEEEEEEcCCCCccHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHH---HCCcEeCCCCHHHEEEeCCCCCEEEeeCc
Confidence            999999999986 899999986  356899999999999999999999   78999999999999999 78999999999


Q ss_pred             eeeeeCCCCCCCccccccccccccccccccCCcc-cccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccc
Q 003296          706 LCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRV-TMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDH  784 (833)
Q Consensus       706 l~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~  784 (833)
                      +++......    .....||+.|+|||++.+..+ +.++|||||||++|||++|+.||......   ..    ...    
T Consensus       196 ~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~---~~----~~~----  260 (320)
T 3a99_A          196 SGALLKDTV----YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEI---IR----GQV----  260 (320)
T ss_dssp             TCEECCSSC----BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHH---HH----CCC----
T ss_pred             ccccccccc----ccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChhhh---hc----ccc----
Confidence            998765322    234679999999999877665 78899999999999999999999643211   10    000    


Q ss_pred             cccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          785 ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       785 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ....          ..+.++.+++.+||+.||++|||++|++++
T Consensus       261 ~~~~----------~~~~~~~~li~~~l~~dp~~Rps~~~ll~h  294 (320)
T 3a99_A          261 FFRQ----------RVSSECQHLIRWCLALRPSDRPTFEEIQNH  294 (320)
T ss_dssp             CCSS----------CCCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             cccc----------cCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            0000          123467899999999999999999999875

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.1e-39  Score=349.76  Aligned_cols=247  Identities=18%  Similarity=0.268  Sum_probs=192.3

Q ss_pred             HHHHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhh--hccChhHHHHHHHHHhcC----CCCCcccceEEE
Q 003296          552 AMEAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIF--QLGSHHKFDKELEVLGKL----SNSNVMTPLAYV  624 (833)
Q Consensus       552 ~~~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~--~~~~~~~~~~E~~~l~~l----~H~niv~~~~~~  624 (833)
                      ...+.|...+.||+|+||.||+|.. .+|+.||||++.......  .......+.+|+++++++    +||||+++++++
T Consensus        28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~  107 (312)
T 2iwi_A           28 AFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWF  107 (312)
T ss_dssp             -----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC
T ss_pred             hhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEE
Confidence            5567899999999999999999987 578999999995322111  112334577899999998    899999999999


Q ss_pred             ecCCceEEEEee-CCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC-CCCCceec
Q 003296          625 LASDSAYLFYEY-APKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK-SLKEPQIG  702 (833)
Q Consensus       625 ~~~~~~~lv~ey-~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~-~~~~~ki~  702 (833)
                      ..++..++|||| +++|+|.+++..  ...+++..+..++.|+++||+|||   +.+|+||||||+||+++ .++.+||+
T Consensus       108 ~~~~~~~~v~e~~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~kl~  182 (312)
T 2iwi_A          108 ETQEGFMLVLERPLPAQDLFDYITE--KGPLGEGPSRCFFGQVVAAIQHCH---SRGVVHRDIKDENILIDLRRGCAKLI  182 (312)
T ss_dssp             -----CEEEEECCSSEEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHH---HHTEECCCCSGGGEEEETTTTEEEEC
T ss_pred             ecCCeEEEEEEecCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChhhEEEeCCCCeEEEE
Confidence            999999999999 789999999986  346899999999999999999999   77899999999999999 88999999


Q ss_pred             cceeeeeeCCCCCCCccccccccccccccccccCCcc-cccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccc
Q 003296          703 DIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRV-TMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDK  781 (833)
Q Consensus       703 dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~  781 (833)
                      |||+++......    .....||+.|+|||++.+..+ +.++|||||||++|||++|+.||......   ..    ... 
T Consensus       183 dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---~~----~~~-  250 (312)
T 2iwi_A          183 DFGSGALLHDEP----YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQEI---LE----AEL-  250 (312)
T ss_dssp             CCSSCEECCSSC----BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHH---HH----TCC-
T ss_pred             EcchhhhcccCc----ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChHHH---hh----hcc-
Confidence            999998765332    245679999999999876666 46899999999999999999999643211   10    000 


Q ss_pred             ccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          782 LDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       782 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                             ...      .....++.+++.+||+.||++|||++|++++
T Consensus       251 -------~~~------~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~  284 (312)
T 2iwi_A          251 -------HFP------AHVSPDCCALIRRCLAPKPSSRPSLEEILLD  284 (312)
T ss_dssp             -------CCC------TTSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred             -------CCc------ccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                   000      0123467899999999999999999999975

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=3e-39  Score=347.39  Aligned_cols=253  Identities=14%  Similarity=0.169  Sum_probs=180.4

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||.||+|... +|+.||||++......  ....+.+..+..+++.++||||+++++++..++..++|
T Consensus        25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv  102 (318)
T 2dyl_A           25 NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNK--EENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIA  102 (318)
T ss_dssp             GGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCH--HHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             ccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccc--hHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEE
Confidence            46778899999999999999974 7999999999532211  11223455555678889999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCC-CeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSN-PILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~-~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      |||+ ++.+..+... ....+++..+..++.|+++||+|||   .. +|+||||||+||+++.++.+||+|||+++....
T Consensus       103 ~e~~-~~~~~~l~~~-~~~~~~~~~~~~~~~~i~~~l~~lH---~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~  177 (318)
T 2dyl_A          103 MELM-GTCAEKLKKR-MQGPIPERILGKMTVAIVKALYYLK---EKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVD  177 (318)
T ss_dssp             ECCC-SEEHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHHH---HHHCCCCCCCCGGGEEECTTSCEEECCCTTC-----
T ss_pred             Eecc-CCcHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHHH---hhCCEEeCCCCHHHEEECCCCCEEEEECCCchhccC
Confidence            9999 4455555442 2356899999999999999999999   64 899999999999999999999999999976643


Q ss_pred             CCCCCcccccccccccccccccc-----CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAY-----TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (833)
                      ..   ......||+.|+|||++.     ...++.++|||||||++|||++|+.||...................      
T Consensus       178 ~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~------  248 (318)
T 2dyl_A          178 DK---AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKVLQEEPP------  248 (318)
T ss_dssp             ------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHHSCCC------
T ss_pred             Cc---cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHHhccCCC------
Confidence            32   123467999999999984     4568899999999999999999999998644433322222211110      


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                       .....    ...+.++.+++.+||+.||++|||++|++++
T Consensus       249 -~~~~~----~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h  284 (318)
T 2dyl_A          249 -LLPGH----MGFSGDFQSFVKDCLTKDHRKRPKYNKLLEH  284 (318)
T ss_dssp             -CCCSS----SCCCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred             -CCCcc----CCCCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence             00000    0123467899999999999999999999874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.9e-37  Score=348.64  Aligned_cols=350  Identities=19%  Similarity=0.217  Sum_probs=244.1

Q ss_pred             ccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCC
Q 003296           24 PTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRN  103 (833)
Q Consensus        24 ~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  103 (833)
                      ..+..+++|++||+++|+|+++ | .|..+++|++|+|++|+|+++ |  ++.+++|++|+|++|.+++. |  ++++++
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~  107 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK  107 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred             cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence            3577889999999999999986 3 689999999999999999975 3  88999999999999999875 3  889999


Q ss_pred             CCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEeccccc
Q 003296          104 LTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNK  183 (833)
Q Consensus       104 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~  183 (833)
                      |++|+|++|+++++ |  ++.+++|++|++++|++++.   .+..+++|+.|++++|...+.++                
T Consensus       108 L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~----------------  165 (457)
T 3bz5_A          108 LTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD----------------  165 (457)
T ss_dssp             CCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC----------------
T ss_pred             CCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc----------------
Confidence            99999999999874 3  88999999999999999874   26666665555555554333333                


Q ss_pred             ccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccc
Q 003296          184 LLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQL  263 (833)
Q Consensus       184 l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~  263 (833)
                              +..+++|++|++++|.+++ +|..-.++|+.|++++|.+.+ +   .+..+++|++|++++|++++. |  +
T Consensus       166 --------~~~l~~L~~L~ls~n~l~~-l~l~~l~~L~~L~l~~N~l~~-~---~l~~l~~L~~L~Ls~N~l~~i-p--~  229 (457)
T 3bz5_A          166 --------VTPQTQLTTLDCSFNKITE-LDVSQNKLLNRLNCDTNNITK-L---DLNQNIQLTFLDCSSNKLTEI-D--V  229 (457)
T ss_dssp             --------CTTCTTCCEEECCSSCCCC-CCCTTCTTCCEEECCSSCCSC-C---CCTTCTTCSEEECCSSCCSCC-C--C
T ss_pred             --------cccCCcCCEEECCCCccce-eccccCCCCCEEECcCCcCCe-e---ccccCCCCCEEECcCCccccc-C--c
Confidence                    3444555555555555543 222222445555555554443 2   367788999999999999984 4  7


Q ss_pred             cCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCE
Q 003296          264 GSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVN  343 (833)
Q Consensus       264 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  343 (833)
                      +.+++|+.|++++|++++..+   +.+++|+.|+++.|              +|+.|++++|.+.+.+|  ++.+++|+.
T Consensus       230 ~~l~~L~~L~l~~N~l~~~~~---~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~  290 (457)
T 3bz5_A          230 TPLTQLTYFDCSVNPLTELDV---STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKE  290 (457)
T ss_dssp             TTCTTCSEEECCSSCCSCCCC---TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCC
T ss_pred             cccCCCCEEEeeCCcCCCcCH---HHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCE
Confidence            889999999999999987643   45566666666554              24455666666555554  345566666


Q ss_pred             EEccCCccccccCcc--------ccCCCCCCEEEccCCcCCccCCCCcccccceeeccccccccchhhhhccCCCCCEEe
Q 003296          344 LNLRQNNLNGSIPNS--------ITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLD  415 (833)
Q Consensus       344 L~L~~N~l~~~~p~~--------~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  415 (833)
                      |+|++|.+.+.+|..        +.++++|++|++++|++++. +.......+.|++++|++++        ++.|..|+
T Consensus       291 L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~  361 (457)
T 3bz5_A          291 LDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-DVSHNTKLKSLSCVNAHIQD--------FSSVGKIP  361 (457)
T ss_dssp             CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-CCTTCTTCSEEECCSSCCCB--------CTTGGGSS
T ss_pred             EECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-ccccCCcCcEEECCCCCCCC--------cccccccc
Confidence            666666655544431        33446777888888887763 32222223567777777775        23456667


Q ss_pred             cccCcCccccchhccCCCCCCeeeCcCCcccccCCCC
Q 003296          416 LSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKF  452 (833)
Q Consensus       416 Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~  452 (833)
                      +++|.++|.     ..+..|+.+++++|+++|.+|..
T Consensus       362 l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          362 ALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             GGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             ccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence            777777765     24456788899999999998863

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=8.6e-40  Score=375.21  Aligned_cols=264  Identities=17%  Similarity=0.178  Sum_probs=200.0

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec------
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA------  626 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~------  626 (833)
                      ...|...+.||+|+||.||+|.. .+|+.||||++....   .....+.|.+|++++++++|||||++++++..      
T Consensus        13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~---~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~   89 (676)
T 3qa8_A           13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQEL---SPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAP   89 (676)
T ss_dssp             ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCC---CHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCT
T ss_pred             CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccC---CHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccC
Confidence            36799999999999999999997 479999999985321   12235679999999999999999999999865      


Q ss_pred             CCceEEEEeeCCCCChhhhhhcCCC-CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC---ceec
Q 003296          627 SDSAYLFYEYAPKGTLFDVLHGCLE-NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE---PQIG  702 (833)
Q Consensus       627 ~~~~~lv~ey~~~g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~---~ki~  702 (833)
                      .+..++|||||++|+|.+++..... ..+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.   +||+
T Consensus        90 ~~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLH---s~gIVHrDLKP~NILl~~~g~~~~vKL~  166 (676)
T 3qa8_A           90 NDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLH---ENRIIHRDLKPENIVLQPGPQRLIHKII  166 (676)
T ss_dssp             TSSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHH---HTTBCCCCCCSTTEEEECCSSSCEEEEC
T ss_pred             CCeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEeecCCCceeEEEc
Confidence            6778999999999999999986432 36899999999999999999999   788999999999999997665   8999


Q ss_pred             cceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc--
Q 003296          703 DIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD--  780 (833)
Q Consensus       703 dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~--  780 (833)
                      |||+++......   ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+......|.........  
T Consensus       167 DFG~a~~~~~~~---~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~  243 (676)
T 3qa8_A          167 DLGYAKELDQGE---LCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEH  243 (676)
T ss_dssp             SCCCCCBTTSCC---CCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC------
T ss_pred             cccccccccccc---ccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccchh
Confidence            999998765433   224568999999999999999999999999999999999999999765444443221111000  


Q ss_pred             -ccccccc------ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHH
Q 003296          781 -KLDHILD------FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVL  826 (833)
Q Consensus       781 -~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl  826 (833)
                       .......      .....+.......+..+.+++.+||+.||++|||++|++
T Consensus       244 ~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL  296 (676)
T 3qa8_A          244 IVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNP  296 (676)
T ss_dssp             CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCC
T ss_pred             hhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHh
Confidence             0000000      011111111123456788999999999999999998843

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.8e-37  Score=346.94  Aligned_cols=354  Identities=26%  Similarity=0.325  Sum_probs=228.2

Q ss_pred             CCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCC-------------CEEEccCCcCcccC
Q 003296           28 GFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKAL-------------EELVLSGNAFHGEI   94 (833)
Q Consensus        28 ~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------------~~L~L~~N~l~~~~   94 (833)
                      ..++|+.|++++|++ +.+|.+|+++++|++|+|++|.+++..|..++.+.+|             ++|++++|.+++. 
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-   86 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-   86 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-
Confidence            356778888888888 5667778888888888888888877778777777765             5555655555542 


Q ss_pred             CccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcC
Q 003296           95 PKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFL  174 (833)
Q Consensus        95 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L  174 (833)
                      |..   .++|+.|++++|.+++ +|..   +++|++|++++|.+++.                         |. +...|
T Consensus        87 p~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-------------------------~~-~~~~L  133 (454)
T 1jl5_A           87 PEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-------------------------SD-LPPLL  133 (454)
T ss_dssp             CSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-------------------------CS-CCTTC
T ss_pred             CCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-------------------------cC-CCCCC
Confidence            221   2455555555555554 3322   24555555555555431                         11 11357


Q ss_pred             CEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCC
Q 003296          175 RNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNS  254 (833)
Q Consensus       175 ~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~  254 (833)
                      ++|++++|++.+ +| .+..+++|++|++++|++++ +|.. .++|+.|++++|.+.+ +|  .|..+++|++|++++|+
T Consensus       134 ~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~-~~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~  206 (454)
T 1jl5_A          134 EYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL-PPSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNS  206 (454)
T ss_dssp             CEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC-CTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSC
T ss_pred             CEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC-cccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCc
Confidence            888888888876 55 58888888888888888875 4443 3588888888888765 54  47888888888888888


Q ss_pred             CCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccc
Q 003296          255 FTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSF  334 (833)
Q Consensus       255 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~  334 (833)
                      +++. |..   .++|++|++++|.+. .+| .++.+++|+.|++++|++++ +|.   .+++|++|++++|.+++ +|..
T Consensus       207 l~~l-~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~  275 (454)
T 1jl5_A          207 LKKL-PDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL  275 (454)
T ss_dssp             CSSC-CCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC
T ss_pred             CCcC-CCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc
Confidence            8863 332   257888888888887 566 47888888888888888886 343   24678888888888886 4443


Q ss_pred             cccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCccCCCCcccccceeeccccccccchhhhhccCCCCCEE
Q 003296          335 LSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVL  414 (833)
Q Consensus       335 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L  414 (833)
                         +++|+.|++++|++++. |..   .++|+.|++++|++++. +..+ ...+.|++++|++++ +|..   +++|+.|
T Consensus       276 ---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i-~~~~-~~L~~L~Ls~N~l~~-lp~~---~~~L~~L  342 (454)
T 1jl5_A          276 ---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSL-CDLP-PSLEELNVSNNKLIE-LPAL---PPRLERL  342 (454)
T ss_dssp             ---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEE-CCCC-TTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred             ---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcc-cCCc-CcCCEEECCCCcccc-cccc---CCcCCEE
Confidence               37788888888888763 211   25788888888888763 3222 233568888888886 5543   4778888


Q ss_pred             ecccCcCccccchhccCCCCCCeeeCcCCcccc--cCCC
Q 003296          415 DLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSG--VVPK  451 (833)
Q Consensus       415 ~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~--~~p~  451 (833)
                      ++++|++++ +|.   .+++|+.|++++|++++  .+|.
T Consensus       343 ~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~  377 (454)
T 1jl5_A          343 IASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPE  377 (454)
T ss_dssp             ECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCT
T ss_pred             ECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChH
Confidence            888888884 554   46788888888888888  4554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=346.13  Aligned_cols=324  Identities=20%  Similarity=0.206  Sum_probs=269.1

Q ss_pred             CCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccC
Q 003296           32 LEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSA  111 (833)
Q Consensus        32 L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  111 (833)
                      -+.++.++++++.+.. .+  .++|++|+|++|+|+++.|..|..+++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus        13 ~~~v~c~~~~l~~ip~-~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPE-GI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TTEEECCSCCCSSCCS-CC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCcCCC-CC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            3578888898886554 33  35889999999999988888999999999999999999988899999999999999999


Q ss_pred             CcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCcc
Q 003296          112 NNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPID  191 (833)
Q Consensus       112 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~  191 (833)
                      |+++++.+..|.++++|++|+|++|.+++..|..|..+++                      |+.|+|++|++.+..+..
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~----------------------L~~L~l~~n~l~~~~~~~  147 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN----------------------LKSLEVGDNDLVYISHRA  147 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT----------------------CCEEEECCTTCCEECTTS
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc----------------------CCEEECCCCccceeChhh
Confidence            9999877788899999999999999998877777766655                      556666677777777777


Q ss_pred             CCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcE
Q 003296          192 LLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTL  271 (833)
Q Consensus       192 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  271 (833)
                      |..+++|+.|+|++|.++                       .+++..|..+++|+.|+|++|.+.+..+..|..+++|+.
T Consensus       148 ~~~l~~L~~L~l~~n~l~-----------------------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~  204 (477)
T 2id5_A          148 FSGLNSLEQLTLEKCNLT-----------------------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV  204 (477)
T ss_dssp             STTCTTCCEEEEESCCCS-----------------------SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCE
T ss_pred             ccCCCCCCEEECCCCcCc-----------------------ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccce
Confidence            888889999999888876                       245567888999999999999999888889999999999


Q ss_pred             EEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCcc
Q 003296          272 LNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNL  351 (833)
Q Consensus       272 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  351 (833)
                      |++++|.+.+.+|.......+|+.|++++|++++..+..|..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++
T Consensus       205 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  284 (477)
T 2id5_A          205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL  284 (477)
T ss_dssp             EEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCC
T ss_pred             eeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCcc
Confidence            99999988877777776677899999999998877667888888999999999998888888888888899999999988


Q ss_pred             ccccCccccCCCCCCEEEccCCcCCccCCCCcccccceeeccccccccchhhhhccCCCCCEEecccCcCcccc
Q 003296          352 NGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEI  425 (833)
Q Consensus       352 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  425 (833)
                      ++..|..|.++++|+.|+|++|++++.                      .+..|..+++|+.|++++|.+.+..
T Consensus       285 ~~~~~~~~~~l~~L~~L~L~~N~l~~~----------------------~~~~~~~l~~L~~L~l~~N~l~c~c  336 (477)
T 2id5_A          285 AVVEPYAFRGLNYLRVLNVSGNQLTTL----------------------EESVFHSVGNLETLILDSNPLACDC  336 (477)
T ss_dssp             SEECTTTBTTCTTCCEEECCSSCCSCC----------------------CGGGBSCGGGCCEEECCSSCEECSG
T ss_pred             ceECHHHhcCcccCCEEECCCCcCcee----------------------CHhHcCCCcccCEEEccCCCccCcc
Confidence            888888888888888888888877632                      2345666777888888888876543

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=1.8e-38  Score=334.87  Aligned_cols=232  Identities=11%  Similarity=0.041  Sum_probs=181.5

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ..|+..+.||+|+||.||+|+.. +|+.||||++... ........+.|.+|++++++++|||||++++++..++..|+|
T Consensus        31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~-~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv  109 (286)
T 3uqc_A           31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQ-GVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVV  109 (286)
T ss_dssp             TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTT-CCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcc-cccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEE
Confidence            45788899999999999999975 6999999999532 111122347899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.++++.   + ....++..|+.|++.||+|||   +.+|+||||||+|||++.++.+||+++         
T Consensus       110 ~e~~~g~~L~~~l~~---~-~~~~~~~~i~~ql~~aL~~lH---~~givH~Dikp~NIll~~~g~~kl~~~---------  173 (286)
T 3uqc_A          110 AEWIRGGSLQEVADT---S-PSPVGAIRAMQSLAAAADAAH---RAGVALSIDHPSRVRVSIDGDVVLAYP---------  173 (286)
T ss_dssp             EECCCEEEHHHHHTT---C-CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEETTSCEEECSC---------
T ss_pred             EEecCCCCHHHHHhc---C-CChHHHHHHHHHHHHHHHHHH---HCCCccCCCCcccEEEcCCCCEEEEec---------
Confidence            999999999999964   2 355578889999999999999   789999999999999999999988733         


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                                   +|++|       ++.++|||||||++|||+||+.||.+.......        ..............
T Consensus       174 -------------~~~~~-------~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~--------~~~~~~~~~~~~~~  225 (286)
T 3uqc_A          174 -------------ATMPD-------ANPQDDIRGIGASLYALLVNRWPLPEAGVRSGL--------APAERDTAGQPIEP  225 (286)
T ss_dssp             -------------CCCTT-------CCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCS--------EECCBCTTSCBCCH
T ss_pred             -------------cccCC-------CCchhHHHHHHHHHHHHHHCCCCCCcCCcchhh--------HHHHHHhccCCCCh
Confidence                         34544       688999999999999999999999854321100        00001111111110


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .......+.++.+++.+||+.||++| |+.|+++.|+++
T Consensus       226 ~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~  263 (286)
T 3uqc_A          226 ADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQA  263 (286)
T ss_dssp             HHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHH
T ss_pred             hhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHH
Confidence            01111234578899999999999999 999999999875

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=8.7e-38  Score=332.66  Aligned_cols=231  Identities=15%  Similarity=0.109  Sum_probs=181.6

Q ss_pred             HhcCCc-cccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHH-hcCCCCCcccceEEEec----C
Q 003296          555 AVANPL-NVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVL-GKLSNSNVMTPLAYVLA----S  627 (833)
Q Consensus       555 ~~~~~~-~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l-~~l~H~niv~~~~~~~~----~  627 (833)
                      ++|... ++||+|+||.||+|.. .+|+.||||++..         ...+.+|++++ +..+|||||++++++..    .
T Consensus        17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~---------~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~   87 (299)
T 3m2w_A           17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD---------CPKARREVELHWRASQCPHIVRIVDVYENLYAGR   87 (299)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC---------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTE
T ss_pred             cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc---------cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCC
Confidence            345555 7899999999999997 5799999999941         24678999998 56689999999999986    6


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC---CCCceeccc
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS---LKEPQIGDI  704 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~---~~~~ki~df  704 (833)
                      ...++||||+++|+|.+++.......+++..+..++.|++.||+|||   +.+|+||||||+||+++.   ++.+||+||
T Consensus        88 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~kl~Df  164 (299)
T 3m2w_A           88 KCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDF  164 (299)
T ss_dssp             EEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCC
T ss_pred             ceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEecCCCCCcEEEecc
Confidence            77999999999999999998765557999999999999999999999   788999999999999998   788999999


Q ss_pred             eeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccc
Q 003296          705 ELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDH  784 (833)
Q Consensus       705 gl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~  784 (833)
                      |+++...                        +..++.++|||||||++|||+||+.||.+.......       ......
T Consensus       165 g~a~~~~------------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~-------~~~~~~  213 (299)
T 3m2w_A          165 GFAKETT------------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS-------PGMKTR  213 (299)
T ss_dssp             TTCEECT------------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC--------------CCSCCS
T ss_pred             ccccccc------------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhh-------HHHHHH
Confidence            9886532                        134778999999999999999999999754321100       000111


Q ss_pred             cccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          785 ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       785 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      +...............+.++.+++.+||+.||++|||+.|+++|
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~h  257 (299)
T 3m2w_A          214 IRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH  257 (299)
T ss_dssp             SCTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             HhhccccCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence            11111111111112345678899999999999999999999875

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=8.4e-38  Score=370.13  Aligned_cols=237  Identities=19%  Similarity=0.207  Sum_probs=190.1

Q ss_pred             HhcCCccccccCcccEEEEEEcC--CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCc---
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP--SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDS---  629 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~---  629 (833)
                      +.|...+.||+|+||.||+|++.  +|+.||||++.....   ....+.|.+|++++++++|||||+++++|...+.   
T Consensus        80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~  156 (681)
T 2pzi_A           80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGD---AEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGD  156 (681)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCC---HHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSC
T ss_pred             CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCC---HHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCC
Confidence            46888899999999999999974  689999999843211   1234678999999999999999999999987765   


Q ss_pred             --eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          630 --AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       630 --~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                        .|+||||+++|+|.+++..    .++|.+++.|+.|+++||+|||   +.+||||||||+|||++.+ .+||+|||++
T Consensus       157 ~~~~lv~E~~~g~~L~~~~~~----~l~~~~~~~~~~qi~~aL~~lH---~~giiHrDlkp~NIll~~~-~~kl~DFG~a  228 (681)
T 2pzi_A          157 PVGYIVMEYVGGQSLKRSKGQ----KLPVAEAIAYLLEILPALSYLH---SIGLVYNDLKPENIMLTEE-QLKLIDLGAV  228 (681)
T ss_dssp             EEEEEEEECCCCEECC----C----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECSS-CEEECCCTTC
T ss_pred             ceeEEEEEeCCCCcHHHHHhC----CCCHHHHHHHHHHHHHHHHHHH---HCCCeecccChHHeEEeCC-cEEEEecccc
Confidence              7999999999999988754    5999999999999999999999   7889999999999999875 8999999999


Q ss_pred             eeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc
Q 003296          708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (833)
                      +.....      ....||++|||||++.+. ++.++|||||||++|||++|..||.+...               ..+  
T Consensus       229 ~~~~~~------~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~~~---------------~~~--  284 (681)
T 2pzi_A          229 SRINSF------GYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGRYV---------------DGL--  284 (681)
T ss_dssp             EETTCC------SCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTEEC---------------SSC--
T ss_pred             hhcccC------CccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCccccc---------------ccc--
Confidence            876432      346799999999988764 48899999999999999999999863110               000  


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCC-HHHHHHHHH
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPK-MKSVLRMLL  830 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps-~~evl~~L~  830 (833)
                         .. ..........+.+++.+||+.||++||+ ++++.+.+.
T Consensus       285 ---~~-~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~  324 (681)
T 2pzi_A          285 ---PE-DDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLT  324 (681)
T ss_dssp             ---CT-TCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHH
T ss_pred             ---cc-cccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHH
Confidence               00 1112233457889999999999999995 555555554

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=3e-38  Score=351.24  Aligned_cols=243  Identities=16%  Similarity=0.120  Sum_probs=182.2

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCC-CCcccceEE----------
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSN-SNVMTPLAY----------  623 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H-~niv~~~~~----------  623 (833)
                      .|...++||+|+||.||+|++ .+|+.||||++.... .......+.|.+|+.+++.++| +|......+          
T Consensus        79 ~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~-~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  157 (413)
T 3dzo_A           79 TLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTE-RPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLV  157 (413)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSC-C----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEE
T ss_pred             eEEEecccccCCCEEEEEEEecCCCCceEEEEEecCC-CccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhc
Confidence            355668999999999999995 589999999985222 2223446789999999999987 332221111          


Q ss_pred             -----------Eec-----CCceEEEEeeCCCCChhhhhh-----cCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCee
Q 003296          624 -----------VLA-----SDSAYLFYEYAPKGTLFDVLH-----GCLENALDWASRYSIAVGVAQGLAFLHGFTSNPIL  682 (833)
Q Consensus       624 -----------~~~-----~~~~~lv~ey~~~g~L~~~l~-----~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~ii  682 (833)
                                 +..     ....+++|+++ +|+|.++++     ......++|..++.++.|+++||+|||   +.+||
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ii  233 (413)
T 3dzo_A          158 KDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGLV  233 (413)
T ss_dssp             ECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH---HTTEE
T ss_pred             ccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcc
Confidence                       111     12357777766 679999985     222346889999999999999999999   78999


Q ss_pred             ecCCCccceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccc----------cCCcccccCcchhhHHHH
Q 003296          683 LLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYA----------YTMRVTMAGNVYSFGVIL  752 (833)
Q Consensus       683 Hrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~~Dv~S~Gvvl  752 (833)
                      ||||||+|||++.++.+||+|||+++.....     ....+| +.|||||++          .+..++.++|||||||++
T Consensus       234 HrDiKp~NILl~~~~~~kL~DFG~a~~~~~~-----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil  307 (413)
T 3dzo_A          234 HTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS-----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAI  307 (413)
T ss_dssp             CSCCCGGGEEECTTCCEEECCGGGCEETTEE-----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHH
T ss_pred             cCCcccceEEEecCCeEEEEeccceeecCCc-----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHH
Confidence            9999999999999999999999999865322     245678 999999998          556689999999999999


Q ss_pred             HHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          753 LELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       753 ~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      |||+||+.||......           .....++...    .    ..+.++.+++.+||+.||++|||+.|++++
T Consensus       308 ~elltg~~Pf~~~~~~-----------~~~~~~~~~~----~----~~~~~~~~li~~~l~~dP~~Rpt~~~~l~~  364 (413)
T 3dzo_A          308 YWIWCADLPNTDDAAL-----------GGSEWIFRSC----K----NIPQPVRALLEGFLRYPKEDRLLPLQAMET  364 (413)
T ss_dssp             HHHHHSSCCCCTTGGG-----------SCSGGGGSSC----C----CCCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             HHHHHCCCCCCCcchh-----------hhHHHHHhhc----c----cCCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence            9999999999754321           1111111110    0    123468899999999999999999888654

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=100.00  E-value=5.9e-38  Score=339.87  Aligned_cols=249  Identities=12%  Similarity=0.069  Sum_probs=187.1

Q ss_pred             HHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchh----hhccChhHHHHHHHHHhcCC---------CCCcccc
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKI----FQLGSHHKFDKELEVLGKLS---------NSNVMTP  620 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~----~~~~~~~~~~~E~~~l~~l~---------H~niv~~  620 (833)
                      .+.|+..+.||+|+||.||+|+. +|+.||||++......    ......+.+.+|++++++++         |||||++
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l   97 (336)
T 2vuw_A           19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL   97 (336)
T ss_dssp             HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred             cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence            45688899999999999999998 7899999999533211    12233478999999999986         5555555


Q ss_pred             eE-----------------EEec-------------CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHH
Q 003296          621 LA-----------------YVLA-------------SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGL  670 (833)
Q Consensus       621 ~~-----------------~~~~-------------~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l  670 (833)
                      .+                 +|.+             ++..|+|||||++|++.+.+.+   ..+++.+++.|+.|++.||
T Consensus        98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~---~~~~~~~~~~i~~qi~~aL  174 (336)
T 2vuw_A           98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT---KLSSLATAKSILHQLTASL  174 (336)
T ss_dssp             EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT---TCCCHHHHHHHHHHHHHHH
T ss_pred             cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh---cCCCHHHHHHHHHHHHHHH
Confidence            44                 4443             6789999999999987777753   4589999999999999999


Q ss_pred             HhhhcCCCCCeeecCCCccceeeCCCC--------------------CceeccceeeeeeCCCCCCCccccccccccccc
Q 003296          671 AFLHGFTSNPILLLDLSTRNIFLKSLK--------------------EPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIP  730 (833)
Q Consensus       671 ~ylH~~~~~~iiHrdlk~~Nill~~~~--------------------~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~a  730 (833)
                      +|||+  +.+|+||||||+|||++.++                    .+||+|||+|+....       ...+||+.|||
T Consensus       175 ~~lH~--~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~-------~~~~gt~~y~a  245 (336)
T 2vuw_A          175 AVAEA--SLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD-------GIVVFCDVSMD  245 (336)
T ss_dssp             HHHHH--HHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET-------TEEECCCCTTC
T ss_pred             HHHHH--hCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC-------CcEEEeecccC
Confidence            99993  35799999999999999887                    899999999987642       23589999999


Q ss_pred             cccccCCcccccCcchhhHHH-HHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHH
Q 003296          731 PEYAYTMRVTMAGNVYSFGVI-LLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAV  809 (833)
Q Consensus       731 PE~~~~~~~~~~~Dv~S~Gvv-l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  809 (833)
                      ||++.+.. +.++||||+|++ .+++++|..||.+.    .|.......   +..................+.++.+++.
T Consensus       246 PE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~dli~  317 (336)
T 2vuw_A          246 EDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNV----LWLHYLTDK---MLKQMTFKTKCNTPAMKQIKRKIQEFHR  317 (336)
T ss_dssp             SGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHH----HHHHHHHHH---HHHTCCCSSCCCSHHHHHHHHHHHHHHH
T ss_pred             hhhhcCCC-ccceehhhhhCCCCcccccccCCCcch----hhhhHHHHh---hhhhhccCcccchhhhhhcCHHHHHHHH
Confidence            99998766 899999998776 88899999999531    121110000   0000000111122234567788999999


Q ss_pred             hccCCCCCCCCCHHHHH-HH
Q 003296          810 ACVSVSPEARPKMKSVL-RM  828 (833)
Q Consensus       810 ~cl~~dP~~Rps~~evl-~~  828 (833)
                      +||+.|     |++|++ +|
T Consensus       318 ~~L~~d-----sa~e~l~~H  332 (336)
T 2vuw_A          318 TMLNFS-----SATDLLCQH  332 (336)
T ss_dssp             HGGGSS-----SHHHHHHHC
T ss_pred             HHhccC-----CHHHHHhcC
Confidence            999976     999998 54

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.9e-35  Score=325.68  Aligned_cols=311  Identities=20%  Similarity=0.219  Sum_probs=219.3

Q ss_pred             CCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 003296           28 GFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLI  107 (833)
Q Consensus        28 ~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  107 (833)
                      .++++++|++++|.++.+.+..|.++++|++|+|++|.|+++.+..|..+++|++|+|++|.+++..|..|+++++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            35677777777777777766667777777777777777777777777777777777777777777777777777777777


Q ss_pred             eccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEeccccccccc
Q 003296          108 DLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGV  187 (833)
Q Consensus       108 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~  187 (833)
                      +|++|.++.+.+..|+++++|++|+|++|.+++..|..|..+++|+.|++++|.+++. +....+.|+.|++++|.+.+.
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~L~~L~l~~n~l~~~  201 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLSTL  201 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-CGGGCTTCSEEECCSSCCSEE
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-ccccccccceeeccccccccc
Confidence            7777777766555667777777777777777777777777777766666666666543 333344566667766666542


Q ss_pred             CCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCC
Q 003296          188 IPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCR  267 (833)
Q Consensus       188 ~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~  267 (833)
                           ...++|+.|++++|.+... |..                         ..++|+.|++++|.+++.  ..+..++
T Consensus       202 -----~~~~~L~~L~l~~n~l~~~-~~~-------------------------~~~~L~~L~l~~n~l~~~--~~l~~l~  248 (390)
T 3o6n_A          202 -----AIPIAVEELDASHNSINVV-RGP-------------------------VNVELTILKLQHNNLTDT--AWLLNYP  248 (390)
T ss_dssp             -----ECCSSCSEEECCSSCCCEE-ECC-------------------------CCSSCCEEECCSSCCCCC--GGGGGCT
T ss_pred             -----CCCCcceEEECCCCeeeec-ccc-------------------------ccccccEEECCCCCCccc--HHHcCCC
Confidence                 1234566666666666532 111                         235677777777777654  4567777


Q ss_pred             CCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEcc
Q 003296          268 SLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLR  347 (833)
Q Consensus       268 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  347 (833)
                      +|++|+|++|.+.+..|..+..+++|+.|++++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|+|+
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~  326 (390)
T 3o6n_A          249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD  326 (390)
T ss_dssp             TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECC
T ss_pred             CccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECC
Confidence            77777777777776667777777777777777777775 3555567778888888888887 456667778888888888


Q ss_pred             CCccccccCccccCCCCCCEEEccCCcCCc
Q 003296          348 QNNLNGSIPNSITNMRSLIELQLGGNQLSG  377 (833)
Q Consensus       348 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  377 (833)
                      +|+++.. +  +..+++|+.|++++|++.+
T Consensus       327 ~N~i~~~-~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          327 HNSIVTL-K--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             SSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred             CCcccee-C--chhhccCCEEEcCCCCccc
Confidence            8888754 2  6677888888888888764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.8e-34  Score=314.14  Aligned_cols=305  Identities=22%  Similarity=0.363  Sum_probs=204.2

Q ss_pred             CCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296            6 GIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL   85 (833)
Q Consensus         6 ~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   85 (833)
                      .+++|+.|++++|.+..++.|..+++|++|++++|+++.+.+  |..+++|++|+|++|.++.+  ..|..+++|++|+|
T Consensus        42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l  117 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYL  117 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEEC
T ss_pred             hcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEEC
Confidence            355666777777777666666666777777777776665544  66667777777777766643  24666667777777


Q ss_pred             cCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCcccccccccccc
Q 003296           86 SGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGS  165 (833)
Q Consensus        86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~  165 (833)
                      ++|.+++..+  +..+++|+.|++++|.....++ .+..+++|++|++++|.+++..+  +..+                
T Consensus       118 ~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l----------------  176 (347)
T 4fmz_A          118 NEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANL----------------  176 (347)
T ss_dssp             TTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGC----------------
T ss_pred             cCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccC----------------
Confidence            7776664432  6666667777777665443333 36666667777776666654332  3333                


Q ss_pred             CChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCC
Q 003296          166 VPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKL  245 (833)
Q Consensus       166 ~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L  245 (833)
                            +.|+.|++++|++.+..+  +..+++|+.|++++|.+++..                       +  +..+++|
T Consensus       177 ------~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-----------------------~--~~~~~~L  223 (347)
T 4fmz_A          177 ------TDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT-----------------------P--VANMTRL  223 (347)
T ss_dssp             ------TTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-----------------------G--GGGCTTC
T ss_pred             ------CCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCc-----------------------h--hhcCCcC
Confidence                  346677777777665433  666778888888888765321                       1  4556677


Q ss_pred             CEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCC
Q 003296          246 TYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWN  325 (833)
Q Consensus       246 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  325 (833)
                      ++|++++|.+++..+  +..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+++.  +.+..+++|+.|++++|
T Consensus       224 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n  297 (347)
T 4fmz_A          224 NSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNN  297 (347)
T ss_dssp             CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred             CEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCC
Confidence            777777777775543  66777777777777777653  3567777777777777777754  34677788888888888


Q ss_pred             cCcccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCC
Q 003296          326 SLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLS  376 (833)
Q Consensus       326 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  376 (833)
                      .+++..|..|..+++|+.|++++|++++..|  +..+++|++|++++|.|+
T Consensus       298 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             cCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            8877777777888888888888888876655  777888888888888764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.7e-34  Score=314.28  Aligned_cols=318  Identities=24%  Similarity=0.352  Sum_probs=260.5

Q ss_pred             CCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccC
Q 003296           15 FSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEI   94 (833)
Q Consensus        15 ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~   94 (833)
                      +....+..+..+..+++|++|++++|.+..+.  .|..+++|++|+|++|+++++.+  |..+++|++|+|++|.++.. 
T Consensus        29 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~-  103 (347)
T 4fmz_A           29 LQKASVTDVVTQEELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI-  103 (347)
T ss_dssp             HTCSCTTSEECHHHHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-
T ss_pred             ccccccCCcccchhcccccEEEEeCCccccch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc-
Confidence            34455666666778899999999999998654  48889999999999999987554  89999999999999999864 


Q ss_pred             CccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcC
Q 003296           95 PKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFL  174 (833)
Q Consensus        95 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L  174 (833)
                       ..|..+++|++|+|++|.+++..+  +..+++|++|++++|.....++. +..+++                      |
T Consensus       104 -~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~----------------------L  157 (347)
T 4fmz_A          104 -SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTG----------------------L  157 (347)
T ss_dssp             -GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTT----------------------C
T ss_pred             -hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCC----------------------C
Confidence             468999999999999999986544  88999999999999965543332 444443                      6


Q ss_pred             CEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCC
Q 003296          175 RNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNS  254 (833)
Q Consensus       175 ~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~  254 (833)
                      ++|++++|.+.+..+  +..+++|+.|++++|.+.+                       ++.  +..+++|+.|++++|.
T Consensus       158 ~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-----------------------~~~--~~~l~~L~~L~l~~n~  210 (347)
T 4fmz_A          158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-----------------------ISP--LASLTSLHYFTAYVNQ  210 (347)
T ss_dssp             CEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC-----------------------CGG--GGGCTTCCEEECCSSC
T ss_pred             cEEEecCCCcCCchh--hccCCCCCEEEccCCcccc-----------------------ccc--ccCCCccceeecccCC
Confidence            667777777665544  6778999999999998763                       222  6678999999999999


Q ss_pred             CCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccc
Q 003296          255 FTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSF  334 (833)
Q Consensus       255 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~  334 (833)
                      +++..+  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+++.  +.+..+++|++|++++|.+++.  ..
T Consensus       211 l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~  282 (347)
T 4fmz_A          211 ITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SV  282 (347)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GG
T ss_pred             CCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hh
Confidence            997655  8899999999999999986554  89999999999999999874  4688999999999999999875  46


Q ss_pred             cccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCccCCCCcccccceeeccccccc
Q 003296          335 LSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFE  398 (833)
Q Consensus       335 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~  398 (833)
                      +..+++|+.|++++|.+++..|..|..+++|++|++++|++++..|.........|++++|.|+
T Consensus       283 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred             hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhhccc
Confidence            8899999999999999999999999999999999999999998766222233368999999886

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=6.2e-35  Score=340.89  Aligned_cols=312  Identities=20%  Similarity=0.218  Sum_probs=241.9

Q ss_pred             CCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 003296           28 GFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLI  107 (833)
Q Consensus        28 ~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  107 (833)
                      .+++++.|++++|.+..+.+..|.++++|++|+|++|.|+++.|..|+.+++|++|+|++|.+++..|..|+++++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            45788889999998888888888888999999999999988888888889999999999999988888888889999999


Q ss_pred             eccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEeccccccccc
Q 003296          108 DLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGV  187 (833)
Q Consensus       108 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~  187 (833)
                      +|++|.|+++++..|+++++|++|+|++|.+++..|..|..+++|+.|++++|.+++. +...++.|+.|++++|.+.+.
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~L~~L~l~~n~l~~l  207 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLSTL  207 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-CGGGCTTCSEEECCSSCCSEE
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-ChhhhhhhhhhhcccCccccc
Confidence            9999998877777788899999999999999888888888888888888777777653 334445577777777766543


Q ss_pred             CCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCC
Q 003296          188 IPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCR  267 (833)
Q Consensus       188 ~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~  267 (833)
                           ...++|+.|++++|.++...                       ..   ..++|+.|+|++|.+++.  ..+..++
T Consensus       208 -----~~~~~L~~L~ls~n~l~~~~-----------------------~~---~~~~L~~L~L~~n~l~~~--~~l~~l~  254 (597)
T 3oja_B          208 -----AIPIAVEELDASHNSINVVR-----------------------GP---VNVELTILKLQHNNLTDT--AWLLNYP  254 (597)
T ss_dssp             -----ECCTTCSEEECCSSCCCEEE-----------------------CS---CCSCCCEEECCSSCCCCC--GGGGGCT
T ss_pred             -----cCCchhheeeccCCcccccc-----------------------cc---cCCCCCEEECCCCCCCCC--hhhccCC
Confidence                 22346777777777665321                       11   124677777777777753  5677777


Q ss_pred             CCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEcc
Q 003296          268 SLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLR  347 (833)
Q Consensus       268 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  347 (833)
                      +|+.|+|++|.+.+..|..|+.+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|+
T Consensus       255 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~  332 (597)
T 3oja_B          255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD  332 (597)
T ss_dssp             TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECC
T ss_pred             CCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECC
Confidence            78888888887777777777777888888888888775 4555667788888888888887 466677888888888888


Q ss_pred             CCccccccCccccCCCCCCEEEccCCcCCcc
Q 003296          348 QNNLNGSIPNSITNMRSLIELQLGGNQLSGT  378 (833)
Q Consensus       348 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  378 (833)
                      +|.+++..   +..+++|+.|++++|++.+.
T Consensus       333 ~N~l~~~~---~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          333 HNSIVTLK---LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             SSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence            88887542   66778888888888887653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.6e-34  Score=337.30  Aligned_cols=312  Identities=19%  Similarity=0.192  Sum_probs=222.4

Q ss_pred             CCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEE
Q 003296           52 ELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVL  131 (833)
Q Consensus        52 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  131 (833)
                      .+.+++.|++++|.++.+++..|..+++|++|+|++|.+++..|..|+.+++|+.|+|++|.|++..|..|+++++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            46789999999999998888888999999999999999999888899999999999999999999888899999999999


Q ss_pred             ECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCccc
Q 003296          132 ILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGS  211 (833)
Q Consensus       132 ~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~  211 (833)
                      +|++|.|++..+..|.++++                      |++|+|++|.+.+..|..|..+++|++|+|++|.+++.
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~----------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  186 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPK----------------------LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  186 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTT----------------------CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             EeeCCCCCCCCHHHhccCCC----------------------CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence            99999999766666666655                      55666666666667777777888888888888877642


Q ss_pred             CCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCC
Q 003296          212 LPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLG  291 (833)
Q Consensus       212 ~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  291 (833)
                       +                         +..+++|+.|++++|.+++.     ...++|+.|++++|.+....+ .+  .+
T Consensus       187 -~-------------------------~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~-~~--~~  232 (597)
T 3oja_B          187 -D-------------------------LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRG-PV--NV  232 (597)
T ss_dssp             -C-------------------------GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEEEC-SC--CS
T ss_pred             -C-------------------------hhhhhhhhhhhcccCccccc-----cCCchhheeeccCCccccccc-cc--CC
Confidence             1                         22344555555555555432     233455666666665543221 11  14


Q ss_pred             CCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEcc
Q 003296          292 ILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLG  371 (833)
Q Consensus       292 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  371 (833)
                      +|+.|+|++|.+++  +..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|+
T Consensus       233 ~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls  309 (597)
T 3oja_B          233 ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLS  309 (597)
T ss_dssp             CCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECC
T ss_pred             CCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECC
Confidence            56666666666654  2456666677777777777776666667777777777777777764 35555666677777777


Q ss_pred             CCcCCccCCCCcccccceeeccccccccchhhhhccCCCCCEEecccCcCccccchhccCCCCCCeeeCcCCccccc
Q 003296          372 GNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGV  448 (833)
Q Consensus       372 ~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  448 (833)
                      +|.++                       .+|..+..+++|+.|+|++|+|++..   +..+++|+.|++++|++++.
T Consensus       310 ~N~l~-----------------------~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          310 HNHLL-----------------------HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             SSCCC-----------------------CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCCC-----------------------ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence            66654                       23444556677777777777776542   55667777788888877654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2e-34  Score=318.94  Aligned_cols=310  Identities=22%  Similarity=0.265  Sum_probs=273.0

Q ss_pred             CCCCCCEEECCCCCCCCccc--ccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEE
Q 003296            6 GIDGLKLLNFSKNELVSLPT--FNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEEL   83 (833)
Q Consensus         6 ~l~~L~~L~ls~N~l~~i~~--f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L   83 (833)
                      .+++++.|++++|.+..+|.  |..+++|++|+|++|.|+.+.+..|..+++|++|+|++|.++++.|..|+.+++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            35899999999999999975  8899999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCcccccccccc
Q 003296           84 VLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFS  163 (833)
Q Consensus        84 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~  163 (833)
                      +|++|.++...+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|.+++.   .+..+++|+.+++++|.++
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence            9999999977667789999999999999999999899999999999999999999875   3667789999999999987


Q ss_pred             ccCChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCC
Q 003296          164 GSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLE  243 (833)
Q Consensus       164 ~~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~  243 (833)
                      +..   ....|+.|++++|++..... .  ..++|+.|++++|.+++.                         ..+..++
T Consensus       200 ~~~---~~~~L~~L~l~~n~l~~~~~-~--~~~~L~~L~l~~n~l~~~-------------------------~~l~~l~  248 (390)
T 3o6n_A          200 TLA---IPIAVEELDASHNSINVVRG-P--VNVELTILKLQHNNLTDT-------------------------AWLLNYP  248 (390)
T ss_dssp             EEE---CCSSCSEEECCSSCCCEEEC-C--CCSSCCEEECCSSCCCCC-------------------------GGGGGCT
T ss_pred             ccC---CCCcceEEECCCCeeeeccc-c--ccccccEEECCCCCCccc-------------------------HHHcCCC
Confidence            632   23469999999999987633 2  347899999999987631                         2466788


Q ss_pred             CCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeecc
Q 003296          244 KLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNIS  323 (833)
Q Consensus       244 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  323 (833)
                      +|++|+|++|.+++..|..|..+++|+.|+|++|++++ +|..+..+++|+.|++++|++++ +|..+..+++|++|+++
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~  326 (390)
T 3o6n_A          249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLD  326 (390)
T ss_dssp             TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECC
T ss_pred             CccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECC
Confidence            99999999999999889999999999999999999985 56677889999999999999984 56678889999999999


Q ss_pred             CCcCcccCccccccCCCCCEEEccCCccccc
Q 003296          324 WNSLSGSIPSFLSNLTNLVNLNLRQNNLNGS  354 (833)
Q Consensus       324 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  354 (833)
                      +|.++.. +  +..+++|+.|++++|+++..
T Consensus       327 ~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          327 HNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             SSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCcccee-C--chhhccCCEEEcCCCCccch
Confidence            9999865 3  67789999999999999764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=2.3e-33  Score=303.23  Aligned_cols=288  Identities=20%  Similarity=0.301  Sum_probs=177.9

Q ss_pred             CCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCC
Q 003296            9 GLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGN   88 (833)
Q Consensus         9 ~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N   88 (833)
                      +++.+++++|.++.+|. .-.++|+.|+|++|+|+++.+..|.++++|++|+|++|+|+++.|..|..+++|++|+|++|
T Consensus        34 ~l~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPK-EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             ETTEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred             cCCEEECCCCCccccCC-CCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence            46677777777776664 12356777777777777666667777777777777777777666677777777777777777


Q ss_pred             cCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCC--CCCcccccCCccCccccccccccccC
Q 003296           89 AFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDG--RLPTSLASITTLSRFAANQNKFSGSV  166 (833)
Q Consensus        89 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~l~l~~n~l~~~~  166 (833)
                      .++. +|..+.  ++|++|++++|++++..+..|.++++|++|++++|.++.  ..|..+..+ +|+.|++++|++++ +
T Consensus       113 ~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l  187 (332)
T 2ft3_A          113 HLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-I  187 (332)
T ss_dssp             CCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-C
T ss_pred             cCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-c
Confidence            7763 343333  567777777777776666667777777777777777642  455555555 55555555444442 2


Q ss_pred             ChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCC
Q 003296          167 PGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLT  246 (833)
Q Consensus       167 p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~  246 (833)
                      |..+.                        ++|++|++++|.+++                       +++..|..+++|+
T Consensus       188 ~~~~~------------------------~~L~~L~l~~n~i~~-----------------------~~~~~l~~l~~L~  220 (332)
T 2ft3_A          188 PKDLP------------------------ETLNELHLDHNKIQA-----------------------IELEDLLRYSKLY  220 (332)
T ss_dssp             CSSSC------------------------SSCSCCBCCSSCCCC-----------------------CCTTSSTTCTTCS
T ss_pred             Ccccc------------------------CCCCEEECCCCcCCc-----------------------cCHHHhcCCCCCC
Confidence            22222                        455555555555542                       2222344555666


Q ss_pred             EEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcC------CCcCcee
Q 003296          247 YLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQ------LKLLSTM  320 (833)
Q Consensus       247 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~------l~~L~~L  320 (833)
                      +|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+..+++|+.|++++|.+++..+..|..      ...|+.|
T Consensus       221 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L  299 (332)
T 2ft3_A          221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI  299 (332)
T ss_dssp             CCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEE
T ss_pred             EEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccce
Confidence            6666666666555555666666666666666665 45555566666666666666666555555543      3567788


Q ss_pred             eccCCcCc--ccCccccccCCCCCEEEccCCc
Q 003296          321 NISWNSLS--GSIPSFLSNLTNLVNLNLRQNN  350 (833)
Q Consensus       321 ~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~  350 (833)
                      ++++|.+.  +..|..|..+++|+.+++++|+
T Consensus       300 ~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          300 SLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             ECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             EeecCcccccccCcccccccchhhhhhccccc
Confidence            88888776  5667778888888888888774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=6.7e-33  Score=299.36  Aligned_cols=289  Identities=22%  Similarity=0.287  Sum_probs=199.5

Q ss_pred             CCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCC
Q 003296            9 GLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGN   88 (833)
Q Consensus         9 ~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N   88 (833)
                      +++.++++++.++.+|. .-.++|++|+|++|+|+++.+..|.++++|++|+|++|+|+++.|..|..+++|++|+|++|
T Consensus        32 ~l~~l~~~~~~l~~lp~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  110 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN  110 (330)
T ss_dssp             ETTEEECTTSCCCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCeEEEecCCCccccCc-cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence            68899999999998875 23478999999999999888888999999999999999999888999999999999999999


Q ss_pred             cCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCC--CCCcccccCCccCccccccccccccC
Q 003296           89 AFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDG--RLPTSLASITTLSRFAANQNKFSGSV  166 (833)
Q Consensus        89 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~l~l~~n~l~~~~  166 (833)
                      .++. +|..+.  ++|+.|++++|.+++..+..|.++++|++|+|++|.++.  ..+..|..+++|+.|++++|.++. +
T Consensus       111 ~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l  186 (330)
T 1xku_A          111 QLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-I  186 (330)
T ss_dssp             CCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-C
T ss_pred             cCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-C
Confidence            9984 455444  789999999999998888889999999999999999864  666777777776666666655542 3


Q ss_pred             ChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCC
Q 003296          167 PGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLT  246 (833)
Q Consensus       167 p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~  246 (833)
                      |..+.                        ++|++|++++|.+++.                       ++..|..+++|+
T Consensus       187 ~~~~~------------------------~~L~~L~l~~n~l~~~-----------------------~~~~~~~l~~L~  219 (330)
T 1xku_A          187 PQGLP------------------------PSLTELHLDGNKITKV-----------------------DAASLKGLNNLA  219 (330)
T ss_dssp             CSSCC------------------------TTCSEEECTTSCCCEE-----------------------CTGGGTTCTTCC
T ss_pred             Ccccc------------------------ccCCEEECCCCcCCcc-----------------------CHHHhcCCCCCC
Confidence            33222                        4455555555554422                       122344455555


Q ss_pred             EEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcC------CCcCcee
Q 003296          247 YLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQ------LKLLSTM  320 (833)
Q Consensus       247 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~------l~~L~~L  320 (833)
                      +|+|++|++++..+..+..+++|+.|+|++|.+. .+|..+..+++|+.|++++|.+++..+..|..      ...++.|
T Consensus       220 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l  298 (330)
T 1xku_A          220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV  298 (330)
T ss_dssp             EEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEE
T ss_pred             EEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccce
Confidence            5555555555554445555555555555555555 44445555555555555555555554444432      2566777


Q ss_pred             eccCCcCcc--cCccccccCCCCCEEEccCCc
Q 003296          321 NISWNSLSG--SIPSFLSNLTNLVNLNLRQNN  350 (833)
Q Consensus       321 ~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~  350 (833)
                      ++++|.+..  ..|..|..+.+++.++|++|+
T Consensus       299 ~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             ECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             EeecCcccccccCccccccccceeEEEecccC
Confidence            777777753  456677777778888887774

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=1.9e-32  Score=295.98  Aligned_cols=306  Identities=22%  Similarity=0.265  Sum_probs=232.2

Q ss_pred             CCCCCCCCccc-ccC------CCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccC
Q 003296           15 FSKNELVSLPT-FNG------FAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSG   87 (833)
Q Consensus        15 ls~N~l~~i~~-f~~------l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~   87 (833)
                      .+.+.+..+|. +..      ..+++.+++++|.++.+.. .+  .++|++|+|++|.|+++.|..|..+++|++|+|++
T Consensus        11 ~~~~~l~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~   87 (332)
T 2ft3_A           11 SGIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPK-EI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN   87 (332)
T ss_dssp             --------------CCCCSSCEEETTEEECCSSCCSSCCS-CC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             cCCCccccCCCcccCCCCCCCcccCCEEECCCCCccccCC-CC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCC
Confidence            34555666652 222      1368888998888885544 33  36888888888888888888888888888888888


Q ss_pred             CcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCC
Q 003296           88 NAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVP  167 (833)
Q Consensus        88 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p  167 (833)
                      |.+++..|..|.++++|++|+|++|+++. +|..+.  ++|++|++++|.+++..+..|..+++|+.|++++|.++.   
T Consensus        88 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~---  161 (332)
T 2ft3_A           88 NKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN---  161 (332)
T ss_dssp             SCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG---
T ss_pred             CccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc---
Confidence            88888888888888888888888888884 444443  788888888888887766667766664444444443321   


Q ss_pred             hhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCE
Q 003296          168 GGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTY  247 (833)
Q Consensus       168 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~  247 (833)
                                       .+..+..+..+ +|++|++++|.+++                       +|...   .++|++
T Consensus       162 -----------------~~~~~~~~~~l-~L~~L~l~~n~l~~-----------------------l~~~~---~~~L~~  197 (332)
T 2ft3_A          162 -----------------SGFEPGAFDGL-KLNYLRISEAKLTG-----------------------IPKDL---PETLNE  197 (332)
T ss_dssp             -----------------GGSCTTSSCSC-CCSCCBCCSSBCSS-----------------------CCSSS---CSSCSC
T ss_pred             -----------------CCCCcccccCC-ccCEEECcCCCCCc-----------------------cCccc---cCCCCE
Confidence                             12445555555 78888888887763                       22221   268999


Q ss_pred             EECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcC
Q 003296          248 LELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSL  327 (833)
Q Consensus       248 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  327 (833)
                      |+|++|.+++..+..|..+++|+.|+|++|.+.+..+..+..+++|+.|++++|+++ .+|..+..+++|++|++++|++
T Consensus       198 L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l  276 (332)
T 2ft3_A          198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI  276 (332)
T ss_dssp             CBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred             EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence            999999999998899999999999999999999988889999999999999999999 6788899999999999999999


Q ss_pred             cccCccccccC------CCCCEEEccCCccc--cccCccccCCCCCCEEEccCCc
Q 003296          328 SGSIPSFLSNL------TNLVNLNLRQNNLN--GSIPNSITNMRSLIELQLGGNQ  374 (833)
Q Consensus       328 ~~~~~~~~~~l------~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~  374 (833)
                      ++..+..|...      ..|+.|++++|.+.  ...|..|..+++|+.+++++|+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            98877777653      67899999999997  6778899999999999999985

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=4.3e-32  Score=293.02  Aligned_cols=290  Identities=21%  Similarity=0.242  Sum_probs=218.1

Q ss_pred             CCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEec
Q 003296           30 AGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDL  109 (833)
Q Consensus        30 ~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  109 (833)
                      .+++.++++++.++.+.. .+  .++|++|+|++|+|+++.+..|..+++|++|+|++|.+++..|..|.++++|++|+|
T Consensus        31 c~l~~l~~~~~~l~~lp~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPK-DL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             EETTEEECTTSCCCSCCC-SC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEEecCCCccccCc-cC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            367888888888875543 33  257888888888888777777888888888888888888777888888888888888


Q ss_pred             cCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEeccccccc--cc
Q 003296          110 SANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLL--GV  187 (833)
Q Consensus       110 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~--~~  187 (833)
                      ++|+++. +|..+.  ++|++|++++|.+++..+..|..+++|+                      .|++++|++.  +.
T Consensus       108 s~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~----------------------~L~l~~n~l~~~~~  162 (330)
T 1xku_A          108 SKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMI----------------------VVELGTNPLKSSGI  162 (330)
T ss_dssp             CSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCC----------------------EEECCSSCCCGGGB
T ss_pred             CCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCcccc----------------------EEECCCCcCCccCc
Confidence            8888874 444433  6788888888888766666666655544                      4444444443  24


Q ss_pred             CCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCC
Q 003296          188 IPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCR  267 (833)
Q Consensus       188 ~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~  267 (833)
                      .+..+..+++|++|++++|.++.                       ++...   .++|++|++++|++++..|..|..++
T Consensus       163 ~~~~~~~l~~L~~L~l~~n~l~~-----------------------l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~  216 (330)
T 1xku_A          163 ENGAFQGMKKLSYIRIADTNITT-----------------------IPQGL---PPSLTELHLDGNKITKVDAASLKGLN  216 (330)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCCS-----------------------CCSSC---CTTCSEEECTTSCCCEECTGGGTTCT
T ss_pred             ChhhccCCCCcCEEECCCCcccc-----------------------CCccc---cccCCEEECCCCcCCccCHHHhcCCC
Confidence            55566777788888888877652                       22221   26889999999999988888899999


Q ss_pred             CCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccC------CCC
Q 003296          268 SLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNL------TNL  341 (833)
Q Consensus       268 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------~~L  341 (833)
                      +|+.|+|++|.+.+..+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..|...      ..|
T Consensus       217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l  295 (330)
T 1xku_A          217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY  295 (330)
T ss_dssp             TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCC
T ss_pred             CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccc
Confidence            9999999999998877778888899999999999988 677778888999999999999987777776543      678


Q ss_pred             CEEEccCCcccc--ccCccccCCCCCCEEEccCCc
Q 003296          342 VNLNLRQNNLNG--SIPNSITNMRSLIELQLGGNQ  374 (833)
Q Consensus       342 ~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~  374 (833)
                      +.|++++|.+..  ..|..|..+.+++.++|++|+
T Consensus       296 ~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cceEeecCcccccccCccccccccceeEEEecccC
Confidence            889999998863  557788888888888888874

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=5.3e-33  Score=297.16  Aligned_cols=121  Identities=28%  Similarity=0.428  Sum_probs=73.4

Q ss_pred             CCCCEEECCCCCCCC--cccccccCCCCCCEEeCcC-CcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 003296           30 AGLEVLDFSSNNLNG--NINLQFDELVSLKSLNLSK-NKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTL  106 (833)
Q Consensus        30 ~~L~~L~Ls~N~l~~--~~~~~f~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  106 (833)
                      .+++.|+|++|++++  ..|..|.++++|++|+|++ |.+.+.+|..|+.+++|++|+|++|.+++.+|..|..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            356666666666665  5555666666666666663 6666556666666666666666666666566666666666666


Q ss_pred             EeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCC
Q 003296          107 IDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASIT  150 (833)
Q Consensus       107 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  150 (833)
                      |+|++|.+++.+|..|+.+++|++|+|++|.+++.+|..+..++
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~  173 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS  173 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh
Confidence            66666666655666666666666666666666555555544443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.98  E-value=1.1e-32  Score=294.62  Aligned_cols=249  Identities=29%  Similarity=0.455  Sum_probs=137.6

Q ss_pred             CCCCEEeCcCCcCCC--CCCcccCCCCCCCEEEccC-CcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcE
Q 003296           54 VSLKSLNLSKNKFNG--FLPINLGKTKALEELVLSG-NAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEV  130 (833)
Q Consensus        54 ~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  130 (833)
                      .+++.|+|++|.+++  .+|..|..+++|++|+|++ |.+.+.+|..|+++++|++|+|++|++++.+|..|.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            456666666666666  5666666666666666663 6666666666666666666666666666666666666666666


Q ss_pred             EECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCccCCCCC-CCCEEecccccCc
Q 003296          131 LILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHP-NLQTIDLSVNMLE  209 (833)
Q Consensus       131 L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~-~L~~L~Ls~N~l~  209 (833)
                      |+|++|.+++.+|..|..+++                      |++|+|++|++.+.+|..+..++ +|++|+|++|.++
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~----------------------L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~  187 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPN----------------------LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTT----------------------CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred             EeCCCCccCCcCChHHhcCCC----------------------CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence            666666666655555554444                      33344444444444444444444 5555555555554


Q ss_pred             ccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCC
Q 003296          210 GSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGS  289 (833)
Q Consensus       210 ~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  289 (833)
                      +.+|.                       .|..++ |++|+|++|++++..|..|..+++|+.|+|++|.+++..|     
T Consensus       188 ~~~~~-----------------------~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----  238 (313)
T 1ogq_A          188 GKIPP-----------------------TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-----  238 (313)
T ss_dssp             EECCG-----------------------GGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-----
T ss_pred             ccCCh-----------------------HHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC-----
Confidence            33322                       222233 5555555555555555555555555555555555543333     


Q ss_pred             CCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEE
Q 003296          290 LGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQ  369 (833)
Q Consensus       290 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  369 (833)
                                         . +..+++|++|++++|.+++.+|..|..+++|+.|+|++|++++.+|.. ..+++|+.++
T Consensus       239 -------------------~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~  297 (313)
T 1ogq_A          239 -------------------K-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSA  297 (313)
T ss_dssp             -------------------G-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGG
T ss_pred             -------------------c-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHH
Confidence                               2 344445555555555555555555555555555555555555555543 4455555555


Q ss_pred             ccCCc
Q 003296          370 LGGNQ  374 (833)
Q Consensus       370 L~~N~  374 (833)
                      +++|+
T Consensus       298 l~~N~  302 (313)
T 1ogq_A          298 YANNK  302 (313)
T ss_dssp             TCSSS
T ss_pred             hcCCC
Confidence            55554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=6.1e-35  Score=330.91  Aligned_cols=351  Identities=19%  Similarity=0.164  Sum_probs=237.0

Q ss_pred             CCCCEEECCCCCCCCcc--c-ccCCCCCCEEECCCCCCCCc----ccccccCCCCCCEEeCcCCcCCCCCCccc-CCCC-
Q 003296            8 DGLKLLNFSKNELVSLP--T-FNGFAGLEVLDFSSNNLNGN----INLQFDELVSLKSLNLSKNKFNGFLPINL-GKTK-   78 (833)
Q Consensus         8 ~~L~~L~ls~N~l~~i~--~-f~~l~~L~~L~Ls~N~l~~~----~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~-   78 (833)
                      ++|+.|++++|+++..+  . |..+++|++|+|++|+++..    .+..|..+++|++|+|++|.++...+..+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            56889999999998753  3 78899999999999999853    35678888999999999999976444332 3344 


Q ss_pred             ---CCCEEEccCCcCcc----cCCccccCCCCCCEEeccCCcCCccCCccc-----cCCCCCcEEECcCCcCCCCC----
Q 003296           79 ---ALEELVLSGNAFHG----EIPKGIADYRNLTLIDLSANNLSGSVPDRI-----GELSKLEVLILSANNLDGRL----  142 (833)
Q Consensus        79 ---~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~----  142 (833)
                         +|++|+|++|.++.    .++..+..+++|++|+|++|.++...+..+     ...++|++|+|++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               79999999999984    568889999999999999999875444333     23668999999999998743    


Q ss_pred             CcccccCCccCccccccccccccCChhhh-------hcCCEEeccccccccc----CCccCCCCCCCCEEecccccCccc
Q 003296          143 PTSLASITTLSRFAANQNKFSGSVPGGIT-------RFLRNLDLSYNKLLGV----IPIDLLSHPNLQTIDLSVNMLEGS  211 (833)
Q Consensus       143 p~~~~~l~~L~~l~l~~n~l~~~~p~~~~-------~~L~~L~Ls~N~l~~~----~~~~~~~~~~L~~L~Ls~N~l~~~  211 (833)
                      +..+..+++|+.|++++|.+++..+..+.       ..|+.|+|++|++...    ++..+..+++|++|+|++|.+++.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            55566677888888888877654333332       2567777777766542    344455566666777766665432


Q ss_pred             CCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCC----CCccccCCCCCcEEEccCCccCCCChhhh
Q 003296          212 LPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGM----IPQQLGSCRSLTLLNLAQNELNGSLPIQL  287 (833)
Q Consensus       212 ~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~p~~~  287 (833)
                      ...                  .+.+..+..+++|++|+|++|.++..    ++..+..+++|++|+|++|.+.+..+..+
T Consensus       243 ~~~------------------~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l  304 (461)
T 1z7x_W          243 GMA------------------ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL  304 (461)
T ss_dssp             HHH------------------HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred             HHH------------------HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence            100                  01122333567777888887777753    45556667777777777777754333333


Q ss_pred             C-----CCCCCcEEEccCCcCCCc----CchhhcCCCcCceeeccCCcCcccCcccccc-----CCCCCEEEccCCcccc
Q 003296          288 G-----SLGILQVMNLQLNKLSGE----IPSQFSQLKLLSTMNISWNSLSGSIPSFLSN-----LTNLVNLNLRQNNLNG  353 (833)
Q Consensus       288 ~-----~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~  353 (833)
                      .     ..++|+.|++++|.+++.    ++..+..+++|++|++++|.+++..+..+..     .++|+.|+|++|++++
T Consensus       305 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~  384 (461)
T 1z7x_W          305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  384 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             HHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence            2     224677777777776654    3445556667777777777666544433332     4566677777766664


Q ss_pred             ----ccCccccCCCCCCEEEccCCcCC
Q 003296          354 ----SIPNSITNMRSLIELQLGGNQLS  376 (833)
Q Consensus       354 ----~~p~~~~~l~~L~~L~L~~N~l~  376 (833)
                          .+|..+..+++|++|++++|+++
T Consensus       385 ~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          385 SSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             hhHHHHHHHHHhCCCccEEECCCCCCC
Confidence                55666666666666666666654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=5.7e-34  Score=322.92  Aligned_cols=383  Identities=20%  Similarity=0.167  Sum_probs=226.2

Q ss_pred             CCCCCEEECCCCCCCCccccc-ccCCCCCCEEeCcCCcCCCC----CCcccCCCCCCCEEEccCCcCcccCCccc-cCCC
Q 003296           29 FAGLEVLDFSSNNLNGNINLQ-FDELVSLKSLNLSKNKFNGF----LPINLGKTKALEELVLSGNAFHGEIPKGI-ADYR  102 (833)
Q Consensus        29 l~~L~~L~Ls~N~l~~~~~~~-f~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~  102 (833)
                      +++|++|||++|+++...... |..+++|++|+|++|.++..    ++..+..+++|++|+|++|.++...+..+ ..+.
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            356889999999998655444 78899999999999998742    35667788999999999999876444333 3354


Q ss_pred             ----CCCEEeccCCcCCc----cCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcC
Q 003296          103 ----NLTLIDLSANNLSG----SVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFL  174 (833)
Q Consensus       103 ----~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L  174 (833)
                          +|++|+|++|.|+.    .++..|..+++|++|+|++|.++...+..+...-                . .....|
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l----------------~-~~~~~L  144 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL----------------L-DPQCRL  144 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHH----------------T-STTCCC
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHH----------------h-cCCCcc
Confidence                69999999999874    4578888899999999999887654333322100                0 001136


Q ss_pred             CEEecccccccccC----CccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEEC
Q 003296          175 RNLDLSYNKLLGVI----PIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLEL  250 (833)
Q Consensus       175 ~~L~Ls~N~l~~~~----~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L  250 (833)
                      ++|+|++|++.+..    +..+..+++|++|++++|.+++..+..+.                  .......++|++|+|
T Consensus       145 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~------------------~~l~~~~~~L~~L~L  206 (461)
T 1z7x_W          145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLC------------------QGLKDSPCQLEALKL  206 (461)
T ss_dssp             CEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH------------------HHHHHSCCCCCEEEC
T ss_pred             eEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHH------------------HHHhcCCCCceEEEc
Confidence            66666666665432    33445567777788777776543211110                  001112345666666


Q ss_pred             CCCCCCCC----CCccccCCCCCcEEEccCCccCCCC-----hhhhCCCCCCcEEEccCCcCCCc----CchhhcCCCcC
Q 003296          251 DNNSFTGM----IPQQLGSCRSLTLLNLAQNELNGSL-----PIQLGSLGILQVMNLQLNKLSGE----IPSQFSQLKLL  317 (833)
Q Consensus       251 ~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L  317 (833)
                      ++|.+++.    ++..+..+++|++|+|++|.+.+..     +..+..+++|+.|++++|.++..    ++..+..+++|
T Consensus       207 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  286 (461)
T 1z7x_W          207 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL  286 (461)
T ss_dssp             TTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTC
T ss_pred             cCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCc
Confidence            66666543    3444555666666666666654321     12223456666666666666543    34555556666


Q ss_pred             ceeeccCCcCcccCcccccc-----CCCCCEEEccCCccccc----cCccccCCCCCCEEEccCCcCCccCCCCcc----
Q 003296          318 STMNISWNSLSGSIPSFLSN-----LTNLVNLNLRQNNLNGS----IPNSITNMRSLIELQLGGNQLSGTIPMMPP----  384 (833)
Q Consensus       318 ~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~----  384 (833)
                      ++|++++|.+.+..+..+..     .++|+.|+|++|.+++.    ++..+..+++|++|++++|.+++..+....    
T Consensus       287 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  366 (461)
T 1z7x_W          287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG  366 (461)
T ss_dssp             CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred             ceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHc
Confidence            66666666665433333322     24666666666666543    344555566666666666666532111000    


Q ss_pred             ---cccceeecccccccc----chhhhhccCCCCCEEecccCcCccccchhc-----cCCCCCCeeeCcCCccc
Q 003296          385 ---RLQIALNLSSNLFEG----PIPTTFARLNGLEVLDLSNNRFSGEIPQLL-----AQMPTLTQLLLTNNQLS  446 (833)
Q Consensus       385 ---~~~~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~ls~N~l~  446 (833)
                         ...+.|++++|.+++    .+|..+..+++|++|++++|++++.-...+     ....+|+.|++.++.+.
T Consensus       367 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          367 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             CCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence               112344455555543    456666677777777777777765422111     12335666666655543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=1.1e-30  Score=284.66  Aligned_cols=282  Identities=20%  Similarity=0.221  Sum_probs=172.4

Q ss_pred             CCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccC
Q 003296            8 DGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSG   87 (833)
Q Consensus         8 ~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~   87 (833)
                      +.....++++|.++.+|. .-.++|++|+|++|+|+++.+..|.++++|++|+|++|+|+++.|..|.++++|++|+|++
T Consensus        31 ~~~~~c~~~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (353)
T 2z80_A           31 DRNGICKGSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY  109 (353)
T ss_dssp             CTTSEEECCSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCCeEeeCCCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence            444557777777777764 2335777777777777777766777777777777777777777777777777777777777


Q ss_pred             CcCcccCCccccCCCCCCEEeccCCcCCccCC-ccccCCCCCcEEECcCC-cCCCCCCcccccCCccCcccccccccccc
Q 003296           88 NAFHGEIPKGIADYRNLTLIDLSANNLSGSVP-DRIGELSKLEVLILSAN-NLDGRLPTSLASITTLSRFAANQNKFSGS  165 (833)
Q Consensus        88 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~l~l~~n~l~~~  165 (833)
                      |++++..+..|.++++|++|+|++|+++++.+ ..|..+++|++|++++| .++...+..|..+++              
T Consensus       110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~--------------  175 (353)
T 2z80_A          110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF--------------  175 (353)
T ss_dssp             SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE--------------
T ss_pred             CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC--------------
Confidence            77776555557777777777777777775444 46777777777777777 355544555554444              


Q ss_pred             CChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCC
Q 003296          166 VPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKL  245 (833)
Q Consensus       166 ~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L  245 (833)
                              |++|++++|++.+..|..+..+++|++|++++|.++                       .++...+..+++|
T Consensus       176 --------L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-----------------------~~~~~~~~~~~~L  224 (353)
T 2z80_A          176 --------LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-----------------------LLLEIFVDVTSSV  224 (353)
T ss_dssp             --------EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-----------------------THHHHHHHHTTTE
T ss_pred             --------CCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-----------------------cchhhhhhhcccc
Confidence                    344444455555555555555566666666665543                       1222233345555


Q ss_pred             CEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCC----cCchhhcCCCcCceee
Q 003296          246 TYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSG----EIPSQFSQLKLLSTMN  321 (833)
Q Consensus       246 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~  321 (833)
                      +.|++++|.+++..+..+..                     ......++.++++++.+.+    .+|..+..+++|++|+
T Consensus       225 ~~L~L~~n~l~~~~~~~l~~---------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~  283 (353)
T 2z80_A          225 ECLELRDTDLDTFHFSELST---------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELE  283 (353)
T ss_dssp             EEEEEESCBCTTCCCC---------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEE
T ss_pred             cEEECCCCcccccccccccc---------------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEE
Confidence            66666666555443332211                     0112233444444444433    2455666777777777


Q ss_pred             ccCCcCcccCccccccCCCCCEEEccCCccccccC
Q 003296          322 ISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIP  356 (833)
Q Consensus       322 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p  356 (833)
                      +++|+++...+..|..+++|++|+|++|++.+..|
T Consensus       284 Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          284 FSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            77777774333345677777777777777765543

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.97  E-value=3.5e-32  Score=312.55  Aligned_cols=190  Identities=15%  Similarity=0.054  Sum_probs=133.9

Q ss_pred             ccccCcccEEEEEEc-CCCceEEEEEccccc------hhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCceEEE
Q 003296          562 VELKTRFSTYYKAVM-PSGMSYFIKKLNWSD------KIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       562 ~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~------~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ..+.|++|.++++.. -.|+.||||++....      ........++|.+|+++|+++ .|+||+++++++++++..|||
T Consensus       241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLV  320 (569)
T 4azs_A          241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV  320 (569)
T ss_dssp             C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEE
T ss_pred             ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEE
Confidence            455677777666553 369999999995321      111223456799999999999 699999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||++||+|.++|..  .+.++..   +|+.||+.||+|+|   +.+||||||||+|||+++++.+||+|||+|+.....
T Consensus       321 MEyv~G~~L~d~i~~--~~~l~~~---~I~~QIl~AL~ylH---~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~  392 (569)
T 4azs_A          321 MEKLPGRLLSDMLAA--GEEIDRE---KILGSLLRSLAALE---KQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQD  392 (569)
T ss_dssp             EECCCSEEHHHHHHT--TCCCCHH---HHHHHHHHHHHHHH---HTTCEESCCCGGGEEECTTSCEEECCCTTEESCC--
T ss_pred             EecCCCCcHHHHHHh--CCCCCHH---HHHHHHHHHHHHHH---HCCceeccCchHhEEECCCCCEEEeecccCeeCCCC
Confidence            999999999999986  3456654   48899999999999   889999999999999999999999999999976543


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcc
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAV  762 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~  762 (833)
                      ..  ...+.+||++|||||++.+ .+..++|+||+|++++++.++..|+
T Consensus       393 ~~--~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~~  438 (569)
T 4azs_A          393 CS--WPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSNW  438 (569)
T ss_dssp             -C--CSHHHHHHHHHHHHHHC------------------CCCCTTHHHH
T ss_pred             Cc--cccCceechhhccHHHhCC-CCCCcccccccccchhhhccccchh
Confidence            32  3356789999999999875 5678899999999998887765544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=5.2e-30  Score=273.55  Aligned_cols=249  Identities=24%  Similarity=0.230  Sum_probs=172.9

Q ss_pred             CCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCC--CcccCCCCCCCEEEccC
Q 003296           10 LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFL--PINLGKTKALEELVLSG   87 (833)
Q Consensus        10 L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~   87 (833)
                      -+.++++++.++.+|. .-.++|++|+|++|+|+.+.+..|.++++|++|+|++|.|+...  |..+..+++|++|+|++
T Consensus         9 ~~~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A            9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             TTEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             CCEEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            3689999999999985 33478999999999999888888999999999999999998442  56677789999999999


Q ss_pred             CcCcccCCccccCCCCCCEEeccCCcCCccCC-ccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccC
Q 003296           88 NAFHGEIPKGIADYRNLTLIDLSANNLSGSVP-DRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSV  166 (833)
Q Consensus        88 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~  166 (833)
                      |.++ .+|..+..+++|++|+|++|++++..+ ..|..+++|++|+|++|.+++..+..|..+++|+             
T Consensus        88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-------------  153 (306)
T 2z66_A           88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE-------------  153 (306)
T ss_dssp             CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCC-------------
T ss_pred             Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCC-------------
Confidence            9988 456678889999999999999887665 6788888999999998888877777666665544             


Q ss_pred             ChhhhhcCCEEecccccccc-cCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCC
Q 003296          167 PGGITRFLRNLDLSYNKLLG-VIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKL  245 (833)
Q Consensus       167 p~~~~~~L~~L~Ls~N~l~~-~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L  245 (833)
                               +|+|++|++.+ ..|..+..+++|++|+|++|.+++..|                       ..|..+++|
T Consensus       154 ---------~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----------------------~~~~~l~~L  201 (306)
T 2z66_A          154 ---------VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-----------------------TAFNSLSSL  201 (306)
T ss_dssp             ---------EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-----------------------TTTTTCTTC
T ss_pred             ---------EEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH-----------------------HHhcCCCCC
Confidence                     44444444443 345555566666666666666553322                       233445555


Q ss_pred             CEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCC-CCcEEEccCCcCCC
Q 003296          246 TYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLG-ILQVMNLQLNKLSG  305 (833)
Q Consensus       246 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~  305 (833)
                      ++|+|++|++++..+..+..+++|+.|+|++|++.+..|..+..++ +|+.|++++|.+++
T Consensus       202 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            5555555555555444555555555555555555555555554442 45555555555543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=6.7e-29  Score=280.00  Aligned_cols=248  Identities=19%  Similarity=0.191  Sum_probs=203.3

Q ss_pred             CCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCC
Q 003296            9 GLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGN   88 (833)
Q Consensus         9 ~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N   88 (833)
                      ..+.++++++.++.+|. .-.++|++|+|++|+|+++.+..|.++++|++|+|++|+|+++.|..|.++++|++|+|++|
T Consensus        55 ~~~~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             SSCEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCcEEEECCCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence            46789999999999985 33478999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcC-CcCCCCCCcccccCCccCccccccccccccCC
Q 003296           89 AFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSA-NNLDGRLPTSLASITTLSRFAANQNKFSGSVP  167 (833)
Q Consensus        89 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p  167 (833)
                      .|++..+..|..+++|++|+|++|+|+.+.+..|.++++|++|+|++ |.++...+..|..+++                
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~----------------  197 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN----------------  197 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT----------------
T ss_pred             cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC----------------
Confidence            99988888899999999999999999988888999999999999998 4555444445666655                


Q ss_pred             hhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCE
Q 003296          168 GGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTY  247 (833)
Q Consensus       168 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~  247 (833)
                            |++|+|++|++.+. | .+..+++|+.|+|++|.+++                       +++..|..+++|+.
T Consensus       198 ------L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~~l~~L~~  246 (452)
T 3zyi_A          198 ------LKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE-----------------------IRPGSFHGLSSLKK  246 (452)
T ss_dssp             ------CCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE-----------------------ECGGGGTTCTTCCE
T ss_pred             ------CCEEECCCCccccc-c-cccccccccEEECcCCcCcc-----------------------cCcccccCccCCCE
Confidence                  45555555555543 2 36667788888888887764                       33345677788888


Q ss_pred             EECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCC
Q 003296          248 LELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLS  304 (833)
Q Consensus       248 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  304 (833)
                      |+|++|++++..+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|.+.
T Consensus       247 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             EEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            888888888877888888888888888888888777777778888888888888765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.2e-29  Score=276.39  Aligned_cols=281  Identities=21%  Similarity=0.229  Sum_probs=184.3

Q ss_pred             CCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 003296           28 GFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLI  107 (833)
Q Consensus        28 ~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  107 (833)
                      .++.....|+++|+++.++.. +.  ++|++|+|++|+|+++.+..|..+++|++|+|++|.+++..|..|.++++|++|
T Consensus        29 ~C~~~~~c~~~~~~l~~iP~~-~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIPSG-LT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             EECTTSEEECCSTTCSSCCTT-CC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCeEeeCCCCCccccccc-cc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            345556678888888765443 32  478888888888887777677888888888888888877777778888888888


Q ss_pred             eccCCcCCccCCccccCCCCCcEEECcCCcCCCCCC-cccccCCccCccccccccccccCChhhhhcCCEEecccccccc
Q 003296          108 DLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLP-TSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLG  186 (833)
Q Consensus       108 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~  186 (833)
                      +|++|+|++..+..|+++++|++|+|++|.+++..+ ..|.                                       
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~---------------------------------------  146 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS---------------------------------------  146 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCT---------------------------------------
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhc---------------------------------------
Confidence            888888876655567777788888887777764332 2333                                       


Q ss_pred             cCCccCCCCCCCCEEeccccc-CcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccC
Q 003296          187 VIPIDLLSHPNLQTIDLSVNM-LEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGS  265 (833)
Q Consensus       187 ~~~~~~~~~~~L~~L~Ls~N~-l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~  265 (833)
                             .+++|++|++++|. +.                       .+++..|..+++|++|++++|++++..|..+..
T Consensus       147 -------~l~~L~~L~l~~n~~~~-----------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~  196 (353)
T 2z80_A          147 -------HLTKLQILRVGNMDTFT-----------------------KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS  196 (353)
T ss_dssp             -------TCTTCCEEEEEESSSCC-----------------------EECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred             -------cCCCCcEEECCCCcccc-----------------------ccCHHHccCCCCCCEEECCCCCcCccCHHHHhc
Confidence                   33444444444442 21                       112223444455555555555555555555555


Q ss_pred             CCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhh---cCCCcCceeeccCCcCcc----cCccccccC
Q 003296          266 CRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQF---SQLKLLSTMNISWNSLSG----SIPSFLSNL  338 (833)
Q Consensus       266 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~----~~~~~~~~l  338 (833)
                      +++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+   .....++.+++++|.+++    .+|..+..+
T Consensus       197 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l  276 (353)
T 2z80_A          197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI  276 (353)
T ss_dssp             CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTC
T ss_pred             cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcc
Confidence            5555555555555543222233345555555555555555443332   235668888898888876    467788999


Q ss_pred             CCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCccCC
Q 003296          339 TNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIP  380 (833)
Q Consensus       339 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  380 (833)
                      ++|+.|+|++|+++...+..|..+++|++|+|++|++.+..|
T Consensus       277 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          277 SGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            999999999999995544557999999999999999987654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=2.8e-29  Score=264.96  Aligned_cols=225  Identities=21%  Similarity=0.209  Sum_probs=162.3

Q ss_pred             CCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCc
Q 003296           10 LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNA   89 (833)
Q Consensus        10 L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~   89 (833)
                      -+.++++++.++.+|. ...++|++|+|++|+|+++.+..|..+++|++|+|++|.|+++.|..|..+++|++|+|++|.
T Consensus        13 ~~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           13 KVTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             SCEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             CeEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            4789999999999985 346789999999999999888889999999999999999998888999999999999999997


Q ss_pred             -CcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCCh
Q 003296           90 -FHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPG  168 (833)
Q Consensus        90 -l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~  168 (833)
                       ++...|..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|..+++                 
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-----------------  154 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN-----------------  154 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-----------------
T ss_pred             CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC-----------------
Confidence             88777888999999999999999998888888899999999999998888655555544443                 


Q ss_pred             hhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEE
Q 003296          169 GITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYL  248 (833)
Q Consensus       169 ~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L  248 (833)
                           |+.|+|++|++.+..+..|..+++|++|+|++|.+++..|                       ..|..+++|+.|
T Consensus       155 -----L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------~~~~~l~~L~~L  206 (285)
T 1ozn_A          155 -----LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-----------------------HAFRDLGRLMTL  206 (285)
T ss_dssp             -----CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-----------------------TTTTTCTTCCEE
T ss_pred             -----ccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH-----------------------hHccCcccccEe
Confidence                 3444444444444444444555555555555555443221                       233444555555


Q ss_pred             ECCCCCCCCCCCccccCCCCCcEEEccCCccC
Q 003296          249 ELDNNSFTGMIPQQLGSCRSLTLLNLAQNELN  280 (833)
Q Consensus       249 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  280 (833)
                      +|++|++++..+..+..+++|+.|+|++|++.
T Consensus       207 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          207 YLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             ECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             eCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            55555555444444555555555555555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=1e-28  Score=277.47  Aligned_cols=248  Identities=20%  Similarity=0.185  Sum_probs=201.4

Q ss_pred             CCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCC
Q 003296            9 GLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGN   88 (833)
Q Consensus         9 ~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N   88 (833)
                      ..+.++++++.++.+|. .-.++++.|+|++|+|+.+.+..|.++++|++|+|++|+|+++.+..|.++++|++|+|++|
T Consensus        44 ~~~~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             TSCEEECCSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CCCEEEeCCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            46789999999999985 33478999999999999999999999999999999999999988899999999999999999


Q ss_pred             cCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCC-cCCCCCCcccccCCccCccccccccccccCC
Q 003296           89 AFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSAN-NLDGRLPTSLASITTLSRFAANQNKFSGSVP  167 (833)
Q Consensus        89 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p  167 (833)
                      +|+.+.+..|..+++|++|+|++|.|+.+.+..|.++++|++|+|++| .++...+..|.++++|+              
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~--------------  188 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR--------------  188 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCC--------------
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccC--------------
Confidence            999888888999999999999999999888889999999999999984 45544455666666654              


Q ss_pred             hhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCE
Q 003296          168 GGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTY  247 (833)
Q Consensus       168 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~  247 (833)
                              +|+|++|+++.+ | .+..+++|+.|+|++|.+++.                       ++..|..+++|+.
T Consensus       189 --------~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~-----------------------~~~~~~~l~~L~~  235 (440)
T 3zyj_A          189 --------YLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAI-----------------------RPGSFQGLMHLQK  235 (440)
T ss_dssp             --------EEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEE-----------------------CTTTTTTCTTCCE
T ss_pred             --------eecCCCCcCccc-c-ccCCCcccCEEECCCCccCcc-----------------------ChhhhccCccCCE
Confidence                    455555555432 2 356677888888888877643                       2345667778888


Q ss_pred             EECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCC
Q 003296          248 LELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLS  304 (833)
Q Consensus       248 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  304 (833)
                      |+|++|++++..+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|.+.
T Consensus       236 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             EECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             EECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            888888888777777888888888888888888777777777888888888888765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=7.8e-29  Score=264.42  Aligned_cols=250  Identities=22%  Similarity=0.244  Sum_probs=172.3

Q ss_pred             CCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCccc--CCccccCCCCCCEEec
Q 003296           32 LEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGE--IPKGIADYRNLTLIDL  109 (833)
Q Consensus        32 L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L  109 (833)
                      -+.++.+++.++.+....   .++|++|+|++|+|+.+.+..|..+++|++|+|++|.++..  .|..+..+++|++|+|
T Consensus         9 ~~~l~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A            9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CCEEEcCCCCcccCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            357888888888665432   26888999999998877777788888999999999888743  3667777888888888


Q ss_pred             cCCcCCccCCccccCCCCCcEEECcCCcCCCCCC-cccccCCccCccccccccccccCChhhhhcCCEEecccccccccC
Q 003296          110 SANNLSGSVPDRIGELSKLEVLILSANNLDGRLP-TSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVI  188 (833)
Q Consensus       110 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~  188 (833)
                      ++|.++. +|..|..+++|++|+|++|.+++..+ ..+..+++                      |++|++++|++.+..
T Consensus        86 s~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~----------------------L~~L~l~~n~l~~~~  142 (306)
T 2z66_A           86 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN----------------------LIYLDISHTHTRVAF  142 (306)
T ss_dssp             CSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT----------------------CCEEECTTSCCEECS
T ss_pred             CCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccC----------------------CCEEECCCCcCCccc
Confidence            8888874 56668888888888888888875543 33333332                      555666666666556


Q ss_pred             CccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCC
Q 003296          189 PIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRS  268 (833)
Q Consensus       189 ~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  268 (833)
                      +..+..+++|++|++++|.+++.                      ..+..|..+++|++|+|++|++++..|..|..+++
T Consensus       143 ~~~~~~l~~L~~L~l~~n~l~~~----------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  200 (306)
T 2z66_A          143 NGIFNGLSSLEVLKMAGNSFQEN----------------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS  200 (306)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGG----------------------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hhhcccCcCCCEEECCCCccccc----------------------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCC
Confidence            66666667777777777766531                      11234556677777777777777766777777777


Q ss_pred             CcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCC-cCceeeccCCcCcc
Q 003296          269 LTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLK-LLSTMNISWNSLSG  329 (833)
Q Consensus       269 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~  329 (833)
                      |+.|+|++|.+.+..+..+..+++|+.|++++|.+++..|..+..++ +|++|++++|.+++
T Consensus       201 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             CCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             CCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            77777777777665555566666666666666666666665555553 56666666666554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=3.5e-28  Score=256.51  Aligned_cols=254  Identities=21%  Similarity=0.204  Sum_probs=184.2

Q ss_pred             CEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccCC
Q 003296           33 EVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSAN  112 (833)
Q Consensus        33 ~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  112 (833)
                      +.++.+++.++.+.. .+  .++|++|+|++|.|+++.+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus        14 ~~~~c~~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPV-GI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSCCT-TC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccCCc-CC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            678888888886543 22  468899999999998888888888889999999999888888888888889999999988


Q ss_pred             c-CCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCcc
Q 003296          113 N-LSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPID  191 (833)
Q Consensus       113 ~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~  191 (833)
                      . ++...|..|..+++|++|+|++|.+++..|..|..+++                      |++|+|++|++.+..+..
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~----------------------L~~L~l~~n~l~~~~~~~  148 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA----------------------LQYLYLQDNALQALPDDT  148 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT----------------------CCEEECCSSCCCCCCTTT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcC----------------------CCEEECCCCcccccCHhH
Confidence            7 77777888888888888888888888776666665554                      455566666666555555


Q ss_pred             CCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcE
Q 003296          192 LLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTL  271 (833)
Q Consensus       192 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  271 (833)
                      |..+++|++|+|++|.+++                       +++..|..+++|++|+|++|++++..|..|..+++|+.
T Consensus       149 ~~~l~~L~~L~l~~n~l~~-----------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  205 (285)
T 1ozn_A          149 FRDLGNLTHLFLHGNRISS-----------------------VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT  205 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCE-----------------------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             hccCCCccEEECCCCcccc-----------------------cCHHHhcCccccCEEECCCCcccccCHhHccCcccccE
Confidence            6677777777777777653                       33344666778888888888888777777878888888


Q ss_pred             EEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCcccc
Q 003296          272 LNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFL  335 (833)
Q Consensus       272 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~  335 (833)
                      |++++|.+++..+..+..+++|+.|++++|.+....+.. .-...++.+..+.+.+....|..+
T Consensus       206 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l  268 (285)
T 1ozn_A          206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRL  268 (285)
T ss_dssp             EECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGG
T ss_pred             eeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHh
Confidence            888888887766666777777777777777776433321 111223344455555555555444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=1.2e-27  Score=269.90  Aligned_cols=229  Identities=23%  Similarity=0.239  Sum_probs=143.7

Q ss_pred             CCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccc
Q 003296           79 ALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAAN  158 (833)
Q Consensus        79 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~  158 (833)
                      +|++|+|++|.|+++.|..|.++++|+.|+|++|+|+++.+..|.++++|++|+|++|.|++..+..|..+++       
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-------  148 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK-------  148 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTT-------
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCC-------
Confidence            4444444444444444444444445555555555444444444445555555555555444443333433333       


Q ss_pred             cccccccCChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccc
Q 003296          159 QNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSAT  238 (833)
Q Consensus       159 ~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~  238 (833)
                                     |++|+|++|++..+.+..|..+++|+.|+|++|...                      +.++...
T Consensus       149 ---------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l----------------------~~i~~~~  191 (452)
T 3zyi_A          149 ---------------LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL----------------------EYISEGA  191 (452)
T ss_dssp             ---------------CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC----------------------CEECTTT
T ss_pred             ---------------CCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCc----------------------cccChhh
Confidence                           233333333333333444555666666666663321                      1233445


Q ss_pred             cCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCc
Q 003296          239 FTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLS  318 (833)
Q Consensus       239 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  318 (833)
                      |..+++|++|+|++|++++. | .+..+++|+.|+|++|.+.+..|..|..+++|+.|++++|++++..+..|..+++|+
T Consensus       192 ~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  269 (452)
T 3zyi_A          192 FEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV  269 (452)
T ss_dssp             TTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             ccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence            66677777777777777754 2 467777788888888887777777788888888888888888877788888888888


Q ss_pred             eeeccCCcCcccCccccccCCCCCEEEccCCcccc
Q 003296          319 TMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNG  353 (833)
Q Consensus       319 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  353 (833)
                      .|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus       270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             EEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             EEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            88888888887777788888888999999888763

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=1.3e-27  Score=268.48  Aligned_cols=248  Identities=23%  Similarity=0.252  Sum_probs=149.5

Q ss_pred             CCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccC
Q 003296           32 LEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSA  111 (833)
Q Consensus        32 L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  111 (833)
                      ...++.++++++.++.. +.  ++++.|+|++|+|+++.+..|.++++|++|+|++|.|+++.+..|.++++|++|+|++
T Consensus        45 ~~~v~c~~~~l~~iP~~-~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDG-IS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCSSCCSC-CC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcCcCCCC-CC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            34555555555543322 21  4555555555555555555555555555555555555555555555555555555555


Q ss_pred             CcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCcc
Q 003296          112 NNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPID  191 (833)
Q Consensus       112 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~  191 (833)
                      |+|+.+.+..|..+++|++|+|++|.|+.                                              ..+..
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~----------------------------------------------~~~~~  155 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIES----------------------------------------------IPSYA  155 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCE----------------------------------------------ECTTT
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccc----------------------------------------------cCHHH
Confidence            55554444455555555555555555543                                              33334


Q ss_pred             CCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcE
Q 003296          192 LLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTL  271 (833)
Q Consensus       192 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  271 (833)
                      |..+++|++|+|++|+..+                      .++...|..+++|++|+|++|+++.. | .+..+++|+.
T Consensus       156 ~~~l~~L~~L~l~~~~~l~----------------------~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~  211 (440)
T 3zyj_A          156 FNRIPSLRRLDLGELKRLS----------------------YISEGAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDE  211 (440)
T ss_dssp             TTTCTTCCEEECCCCTTCC----------------------EECTTTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCE
T ss_pred             hhhCcccCEeCCCCCCCcc----------------------eeCcchhhcccccCeecCCCCcCccc-c-ccCCCcccCE
Confidence            4455555555555533211                      23334455666666666666666643 2 3566666777


Q ss_pred             EEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCcc
Q 003296          272 LNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNL  351 (833)
Q Consensus       272 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  351 (833)
                      |+|++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+
T Consensus       212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             EECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            77777777666666677777777777777777777777777778888888888888877777777888888888888887


Q ss_pred             c
Q 003296          352 N  352 (833)
Q Consensus       352 ~  352 (833)
                      .
T Consensus       292 ~  292 (440)
T 3zyj_A          292 N  292 (440)
T ss_dssp             E
T ss_pred             c
Confidence            5

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=5.1e-27  Score=271.31  Aligned_cols=269  Identities=26%  Similarity=0.291  Sum_probs=201.2

Q ss_pred             CCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccC
Q 003296            8 DGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSG   87 (833)
Q Consensus         8 ~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~   87 (833)
                      .+++.|+|++|.|+.+|... .++|+.|+|++|+|+.+.+    .+++|++|+|++|+|+++++    .+++|++|+|++
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l-~~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~  110 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFS  110 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCC-CTTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECS
T ss_pred             CCCcEEEecCCCcCccChhh-CCCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcC
Confidence            35889999999999988522 2789999999999986654    57899999999999986443    678899999999


Q ss_pred             CcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCC
Q 003296           88 NAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVP  167 (833)
Q Consensus        88 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p  167 (833)
                      |.++++. .   .+++|+.|+|++|+|++ +|..   +++|++|+|++|.+++. |..   +.+                
T Consensus       111 N~l~~l~-~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~~---~~~----------------  162 (622)
T 3g06_A          111 NPLTHLP-A---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PAL---PSE----------------  162 (622)
T ss_dssp             CCCCCCC-C---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CCC---CTT----------------
T ss_pred             CcCCCCC-C---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CCc---cCC----------------
Confidence            9998643 3   57889999999999986 4433   48899999999988753 321   233                


Q ss_pred             hhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCE
Q 003296          168 GGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTY  247 (833)
Q Consensus       168 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~  247 (833)
                            |+.|++++|+++++ |   ..+++|+.|++++|.+++ +|. ..++|+.|++++|.+.. ++.    .+++|+.
T Consensus       163 ------L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~-l~~-~~~~L~~L~L~~N~l~~-l~~----~~~~L~~  225 (622)
T 3g06_A          163 ------LCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLAS-LPT-LPSELYKLWAYNNRLTS-LPA----LPSGLKE  225 (622)
T ss_dssp             ------CCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSS-CCC----CCTTCCE
T ss_pred             ------CCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCC-CCC-ccchhhEEECcCCcccc-cCC----CCCCCCE
Confidence                  55555555555542 2   234566666666666664 332 23566667776666543 442    3478999


Q ss_pred             EECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcC
Q 003296          248 LELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSL  327 (833)
Q Consensus       248 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  327 (833)
                      |+|++|+++++ |   ..+++|+.|+|++|.|+. +|.   .+++|+.|+|++|+|+ .+|..|..+++|+.|+|++|.+
T Consensus       226 L~Ls~N~L~~l-p---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          226 LIVSGNRLTSL-P---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             EECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCC
T ss_pred             EEccCCccCcC-C---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCC
Confidence            99999999864 4   456889999999999984 454   5688999999999999 6688899999999999999999


Q ss_pred             cccCccccccCC
Q 003296          328 SGSIPSFLSNLT  339 (833)
Q Consensus       328 ~~~~~~~~~~l~  339 (833)
                      ++..|..+..++
T Consensus       297 ~~~~~~~l~~L~  308 (622)
T 3g06_A          297 SERTLQALREIT  308 (622)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CCcCHHHHHhcc
Confidence            988888777654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=3.3e-29  Score=268.46  Aligned_cols=264  Identities=22%  Similarity=0.216  Sum_probs=166.7

Q ss_pred             CCCEEECCCCCCCCcc--cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEcc
Q 003296            9 GLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLS   86 (833)
Q Consensus         9 ~L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~   86 (833)
                      .++.++++.+.+..++  .+..+++|++|||++|+|+++.+..|.++++|++|+|++|++++..|  |..+++|++|+|+
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            3556666776666542  25666778888888888887777778888888888888888876544  7778888888888


Q ss_pred             CCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccC
Q 003296           87 GNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSV  166 (833)
Q Consensus        87 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~  166 (833)
                      +|.+++..     ..++|+.|++++|++++..+..   +++|++|+|++|.+++..+..+..+++|              
T Consensus        89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L--------------  146 (317)
T 3o53_A           89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRV--------------  146 (317)
T ss_dssp             SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSE--------------
T ss_pred             CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCC--------------
Confidence            88777533     2367788888888777655443   5667777777777776666666555443              


Q ss_pred             ChhhhhcCCEEecccccccccCCccCC-CCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCC
Q 003296          167 PGGITRFLRNLDLSYNKLLGVIPIDLL-SHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKL  245 (833)
Q Consensus       167 p~~~~~~L~~L~Ls~N~l~~~~~~~~~-~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L  245 (833)
                              ++|+|++|++.+..+..+. .+++|++|+|++|.+++.                       +.  ...+++|
T Consensus       147 --------~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------------------~~--~~~l~~L  193 (317)
T 3o53_A          147 --------QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-----------------------KG--QVVFAKL  193 (317)
T ss_dssp             --------EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-----------------------EC--CCCCTTC
T ss_pred             --------CEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-----------------------cc--ccccccC
Confidence                    3444444444444443332 456666666666665532                       11  1125666


Q ss_pred             CEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCC-CcCchhhcCCCcCceeeccC
Q 003296          246 TYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLS-GEIPSQFSQLKLLSTMNISW  324 (833)
Q Consensus       246 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~Ls~  324 (833)
                      ++|+|++|++++..+ .+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|.+. +..|..+..++.|+.|++++
T Consensus       194 ~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          194 KTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             CEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence            666666666665433 3666666666666666666 34555666666666666666666 55556666666666666663


Q ss_pred             -CcCcccC
Q 003296          325 -NSLSGSI  331 (833)
Q Consensus       325 -N~l~~~~  331 (833)
                       +.+.+..
T Consensus       272 ~~~l~~~~  279 (317)
T 3o53_A          272 VKKLTGQN  279 (317)
T ss_dssp             HHHHHSSS
T ss_pred             chhccCCc
Confidence             3344433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=2.4e-27  Score=254.78  Aligned_cols=234  Identities=21%  Similarity=0.272  Sum_probs=128.8

Q ss_pred             CCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEEC
Q 003296           54 VSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLIL  133 (833)
Q Consensus        54 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  133 (833)
                      .+++.|+|++|.|+ .+|..+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.++ .+|..|+++++|++|+|
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            44444455554444 23333444455555555555554 44444555555555555555554 34444555555555555


Q ss_pred             cCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCC
Q 003296          134 SANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLP  213 (833)
Q Consensus       134 s~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p  213 (833)
                      ++|++.+.+|..+.....           .+.+  .-+..|++|+|++|++. .+|..+..+++|++|+|++|.+++   
T Consensus       158 ~~n~~~~~~p~~~~~~~~-----------~~~~--~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~---  220 (328)
T 4fcg_A          158 RACPELTELPEPLASTDA-----------SGEH--QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA---  220 (328)
T ss_dssp             EEETTCCCCCSCSEEEC------------CCCE--EESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC---
T ss_pred             CCCCCccccChhHhhccc-----------hhhh--ccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc---
Confidence            555555445444432100           0000  00223555555555555 445556666667777776666552   


Q ss_pred             CCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCC
Q 003296          214 QNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGIL  293 (833)
Q Consensus       214 ~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  293 (833)
                                          +++ .|..+++|++|+|++|.+.+.+|..|+.+++|+.|+|++|.+.+.+|..+..+++|
T Consensus       221 --------------------l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L  279 (328)
T 4fcg_A          221 --------------------LGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL  279 (328)
T ss_dssp             --------------------CCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTC
T ss_pred             --------------------Cch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCC
Confidence                                111 24556666666666666666666666666666666666666666666666666666


Q ss_pred             cEEEccCCcCCCcCchhhcCCCcCceeeccCCcCc
Q 003296          294 QVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLS  328 (833)
Q Consensus       294 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  328 (833)
                      +.|++++|.+.+.+|..+..+++|+.+++..|.+.
T Consensus       280 ~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            66666666666666666777777777766665544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=3e-27  Score=254.09  Aligned_cols=233  Identities=20%  Similarity=0.264  Sum_probs=121.8

Q ss_pred             CCCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCcccc
Q 003296           78 KALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAA  157 (833)
Q Consensus        78 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l  157 (833)
                      .++++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.++ .+|..+..+++|+.|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            44555555555555 44445555555555555555555 45555555555555555555555 44555555555444444


Q ss_pred             ccccccccCChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCcc
Q 003296          158 NQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSA  237 (833)
Q Consensus       158 ~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~  237 (833)
                      ++|++.+.+|..+..    .+         .+..+..+++|++|+|++|.++ .                      +| .
T Consensus       158 ~~n~~~~~~p~~~~~----~~---------~~~~~~~l~~L~~L~L~~n~l~-~----------------------lp-~  200 (328)
T 4fcg_A          158 RACPELTELPEPLAS----TD---------ASGEHQGLVNLQSLRLEWTGIR-S----------------------LP-A  200 (328)
T ss_dssp             EEETTCCCCCSCSEE----EC----------CCCEEESTTCCEEEEEEECCC-C----------------------CC-G
T ss_pred             CCCCCccccChhHhh----cc---------chhhhccCCCCCEEECcCCCcC-c----------------------ch-H
Confidence            444444333322211    00         0112233555555555555543 1                      11 1


Q ss_pred             ccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcC
Q 003296          238 TFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLL  317 (833)
Q Consensus       238 ~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  317 (833)
                      .|..+++|++|+|++|++++ +|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+..+++|
T Consensus       201 ~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L  279 (328)
T 4fcg_A          201 SIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL  279 (328)
T ss_dssp             GGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTC
T ss_pred             hhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCC
Confidence            24445555555555555554 23345555555555555555555555555555555555555555555555555555555


Q ss_pred             ceeeccCCcCcccCccccccCCCCCEEEccCCcc
Q 003296          318 STMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNL  351 (833)
Q Consensus       318 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  351 (833)
                      ++|+|++|++.+.+|..+..+++|+.+++..|.+
T Consensus       280 ~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             CEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             CEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            5555555555555555555555555555555444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=2.7e-29  Score=269.13  Aligned_cols=260  Identities=20%  Similarity=0.196  Sum_probs=158.7

Q ss_pred             CCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEec
Q 003296           30 AGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDL  109 (833)
Q Consensus        30 ~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  109 (833)
                      .+++.++++.+++.......|..+++|++|+|++|+|+++.|..|..+++|++|+|++|.+++..+  |..+++|++|+|
T Consensus        10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L   87 (317)
T 3o53_A           10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL   87 (317)
T ss_dssp             TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred             CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence            345667888888876666777778888888888888888777788888888888888888876554  788888888888


Q ss_pred             cCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCC
Q 003296          110 SANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIP  189 (833)
Q Consensus       110 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~  189 (833)
                      ++|+|++..     ..++|++|++++|.+++..+..                         ++.|+.|++++|++.+..+
T Consensus        88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~-------------------------~~~L~~L~l~~N~l~~~~~  137 (317)
T 3o53_A           88 NNNYVQELL-----VGPSIETLHAANNNISRVSCSR-------------------------GQGKKNIYLANNKITMLRD  137 (317)
T ss_dssp             CSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC-------------------------CSSCEEEECCSSCCCSGGG
T ss_pred             cCCcccccc-----CCCCcCEEECCCCccCCcCccc-------------------------cCCCCEEECCCCCCCCccc
Confidence            888877533     2377788888877776433221                         1225666666666666666


Q ss_pred             ccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCC
Q 003296          190 IDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSL  269 (833)
Q Consensus       190 ~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  269 (833)
                      ..+..+++|++|+|++|.+++..+                      ...+..+++|++|+|++|.+++..+  ...+++|
T Consensus       138 ~~~~~l~~L~~L~Ls~N~l~~~~~----------------------~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L  193 (317)
T 3o53_A          138 LDEGCRSRVQYLDLKLNEIDTVNF----------------------AELAASSDTLEHLNLQYNFIYDVKG--QVVFAKL  193 (317)
T ss_dssp             BCTGGGSSEEEEECTTSCCCEEEG----------------------GGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTC
T ss_pred             hhhhccCCCCEEECCCCCCCcccH----------------------HHHhhccCcCCEEECCCCcCccccc--ccccccC
Confidence            566666666667666666653211                      1112345667777777777665422  2235666


Q ss_pred             cEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCc-ccCccccccCCCCCEEEcc
Q 003296          270 TLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLS-GSIPSFLSNLTNLVNLNLR  347 (833)
Q Consensus       270 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~  347 (833)
                      ++|+|++|++++. |..+..+++|+.|++++|.++. +|..+..+++|+.|++++|.+. +.+|..+..+++|+.|+++
T Consensus       194 ~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          194 KTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             CEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             CEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            6666666665532 2224444445555555554442 3333444444444444444444 3334444444444444444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=2e-26  Score=266.31  Aligned_cols=263  Identities=24%  Similarity=0.281  Sum_probs=172.5

Q ss_pred             CCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEec
Q 003296           30 AGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDL  109 (833)
Q Consensus        30 ~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  109 (833)
                      .+++.|++++|+|+.+. ..+.  ++|++|+|++|+|+.+.+    .+++|++|+|++|+|++ +|.   .+++|++|+|
T Consensus        40 ~~l~~L~ls~n~L~~lp-~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L  108 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLP-DCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI  108 (622)
T ss_dssp             HCCCEEECCSSCCSCCC-SCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred             CCCcEEEecCCCcCccC-hhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence            35888999999988554 3443  789999999999886443    46888899999988885 444   6788888888


Q ss_pred             cCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCC
Q 003296          110 SANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIP  189 (833)
Q Consensus       110 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~  189 (833)
                      ++|+|+++.+    .+++|+.|+|++|+|++ +|..+                         +.|++|+|++|++.++ |
T Consensus       109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~l-------------------------~~L~~L~Ls~N~l~~l-~  157 (622)
T 3g06_A          109 FSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPVLP-------------------------PGLQELSVSDNQLASL-P  157 (622)
T ss_dssp             CSCCCCCCCC----CCTTCCEEECCSSCCSC-CCCCC-------------------------TTCCEEECCSSCCSCC-C
T ss_pred             cCCcCCCCCC----CCCCcCEEECCCCCCCc-CCCCC-------------------------CCCCEEECcCCcCCCc-C
Confidence            8888886433    56788888888888875 22211                         2377777888777653 3


Q ss_pred             ccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCC
Q 003296          190 IDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSL  269 (833)
Q Consensus       190 ~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  269 (833)
                      .   ..++|+.|++++|.+++ +| .                         .+++|+.|+|++|+++++ |.   .+++|
T Consensus       158 ~---~~~~L~~L~L~~N~l~~-l~-~-------------------------~~~~L~~L~Ls~N~l~~l-~~---~~~~L  203 (622)
T 3g06_A          158 A---LPSELCKLWAYNNQLTS-LP-M-------------------------LPSGLQELSVSDNQLASL-PT---LPSEL  203 (622)
T ss_dssp             C---CCTTCCEEECCSSCCSC-CC-C-------------------------CCTTCCEEECCSSCCSCC-CC---CCTTC
T ss_pred             C---ccCCCCEEECCCCCCCC-Cc-c-------------------------cCCCCcEEECCCCCCCCC-CC---ccchh
Confidence            2   24678888888888764 22 1                         234556666666665542 22   13556


Q ss_pred             cEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCC
Q 003296          270 TLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQN  349 (833)
Q Consensus       270 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  349 (833)
                      +.|++++|.++. +|.   .+++|+.|++++|.+++ +|   ..+++|+.|++++|.|+. +|.   .+++|+.|+|++|
T Consensus       204 ~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N  271 (622)
T 3g06_A          204 YKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRN  271 (622)
T ss_dssp             CEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS
T ss_pred             hEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCC
Confidence            666666666552 232   23556666666666664 33   344667777777777763 343   4566777777777


Q ss_pred             ccccccCccccCCCCCCEEEccCCcCCccCCC
Q 003296          350 NLNGSIPNSITNMRSLIELQLGGNQLSGTIPM  381 (833)
Q Consensus       350 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  381 (833)
                      +|+ .+|..|.++++|+.|+|++|++++..|.
T Consensus       272 ~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          272 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            776 5566677777777777777777655443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=8e-30  Score=298.43  Aligned_cols=322  Identities=16%  Similarity=0.108  Sum_probs=154.6

Q ss_pred             CCCCCCEEeccCCcCCcc----CCccccCCCCCcEEECcCCcCCCC----CCcccccCCccCccccccccccccCChhh-
Q 003296          100 DYRNLTLIDLSANNLSGS----VPDRIGELSKLEVLILSANNLDGR----LPTSLASITTLSRFAANQNKFSGSVPGGI-  170 (833)
Q Consensus       100 ~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~l~l~~n~l~~~~p~~~-  170 (833)
                      ++++|++|+|++|.+++.    ++..+..+++|++|+|++|.+++.    ++..+.++++|+.|++++|.+.+ +|..+ 
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence            344444444444444332    112233344444444444444421    12223334444444444444433 22222 


Q ss_pred             -hhcCCEEeccccccc---ccCCccCCCCCCCCEEecccccCcccCCCCC--CcCCcEEEcCCccccCCCCccccCCCCC
Q 003296          171 -TRFLRNLDLSYNKLL---GVIPIDLLSHPNLQTIDLSVNMLEGSLPQNM--SPNLVRLRLGTNLLIGEIPSATFTSLEK  244 (833)
Q Consensus       171 -~~~L~~L~Ls~N~l~---~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~l~~n~l~~~~~~~~f~~l~~  244 (833)
                       .+.|+.|+++.....   ...+..+..+++|+.|+++++.. +.+|..+  .++|++|++++|.+.+......+..+++
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~  319 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN  319 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence             233555555432211   12223344555666666655422 2233222  2466666666665332222223456777


Q ss_pred             CCEEECCCCCCC-CCCCccccCCCCCcEEEcc-----------CCccCCC-ChhhhCCCCCCcEEEccCCcCCCcCchhh
Q 003296          245 LTYLELDNNSFT-GMIPQQLGSCRSLTLLNLA-----------QNELNGS-LPIQLGSLGILQVMNLQLNKLSGEIPSQF  311 (833)
Q Consensus       245 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~-----------~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~  311 (833)
                      |++|+++ +.+. +..+..+..+++|++|+|+           .|.+++. ++.....+++|+.|+++.|.+++..+..+
T Consensus       320 L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l  398 (592)
T 3ogk_B          320 LEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI  398 (592)
T ss_dssp             CCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH
T ss_pred             CCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH
Confidence            7777777 3332 2233334566777777777           2444432 12223446777777777777766555555


Q ss_pred             cC-CCcCceeecc----CCcCccc-----CccccccCCCCCEEEccCCc--cccccCcccc-CCCCCCEEEccCCcCCcc
Q 003296          312 SQ-LKLLSTMNIS----WNSLSGS-----IPSFLSNLTNLVNLNLRQNN--LNGSIPNSIT-NMRSLIELQLGGNQLSGT  378 (833)
Q Consensus       312 ~~-l~~L~~L~Ls----~N~l~~~-----~~~~~~~l~~L~~L~L~~N~--l~~~~p~~~~-~l~~L~~L~L~~N~l~~~  378 (833)
                      .. +++|+.|+++    .|.+++.     ++..+.++++|+.|+|++|.  +++..+..+. .+++|++|+|++|.+++.
T Consensus       399 ~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~  478 (592)
T 3ogk_B          399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE  478 (592)
T ss_dssp             HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH
T ss_pred             HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH
Confidence            54 6777777775    5566643     33345667777777776432  4444333333 366777777777766531


Q ss_pred             -CCCCcc--cccceeeccccccccc-hhhhhccCCCCCEEecccCcCccc
Q 003296          379 -IPMMPP--RLQIALNLSSNLFEGP-IPTTFARLNGLEVLDLSNNRFSGE  424 (833)
Q Consensus       379 -~p~~~~--~~~~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~  424 (833)
                       ++....  ...+.|++++|.+++. ++..+..+++|+.|++++|+++..
T Consensus       479 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          479 GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence             110000  0112333344433322 223334455566666666655543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=4.2e-29  Score=266.96  Aligned_cols=257  Identities=22%  Similarity=0.235  Sum_probs=144.3

Q ss_pred             cccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCc-ccCCcccc-------CCCCCCEEeccCCcCCccCCc
Q 003296           49 QFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFH-GEIPKGIA-------DYRNLTLIDLSANNLSGSVPD  120 (833)
Q Consensus        49 ~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~~~  120 (833)
                      .+.+.++|++|++++|.+  .+|..+...  |+.|+|++|.++ ..+|..+.       ++++|++|+|++|++++..|.
T Consensus        38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            455667778888888887  455544433  777788888773 34555554       677888888888888777777


Q ss_pred             cc--cCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCccCCCCCCC
Q 003296          121 RI--GELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNL  198 (833)
Q Consensus       121 ~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L  198 (833)
                      .+  +.+++|++|+|++|.+++. |..+..+...                 ..+.|++|+|++|++.+..|..|..+++|
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~-----------------~~~~L~~L~L~~N~l~~~~~~~~~~l~~L  175 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQW-----------------LKPGLKVLSIAQAHSLNFSCEQVRVFPAL  175 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTT-----------------CCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred             HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHh-----------------hcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence            65  7788888888888888766 6555443110                 01336667777777766666667777777


Q ss_pred             CEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCC---CCccccCCCCCcEEEcc
Q 003296          199 QTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGM---IPQQLGSCRSLTLLNLA  275 (833)
Q Consensus       199 ~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~L~  275 (833)
                      ++|+|++|++.+.++                   .++...|..+++|++|+|++|++++.   ....+..+++|+.|+|+
T Consensus       176 ~~L~Ls~N~l~~~~~-------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls  236 (312)
T 1wwl_A          176 STLDLSDNPELGERG-------------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS  236 (312)
T ss_dssp             CEEECCSCTTCHHHH-------------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECT
T ss_pred             CEEECCCCCcCcchH-------------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECC
Confidence            777777776554211                   00111234566666666666666521   11223445555666665


Q ss_pred             CCccCCCCh-hhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCcc
Q 003296          276 QNELNGSLP-IQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNL  351 (833)
Q Consensus       276 ~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  351 (833)
                      +|.+.+..| ..+..+++|+.|+|++|.++ .+|..+.  ++|++|+|++|++++. |. +..+++|++|+|++|++
T Consensus       237 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             TSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTT
T ss_pred             CCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCC
Confidence            555554443 22333444444444444444 2333222  3444444444444433 22 33444444444444443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.2e-29  Score=297.08  Aligned_cols=401  Identities=14%  Similarity=0.104  Sum_probs=291.0

Q ss_pred             cccccccCCCCCCEEeCcCCcC---CCCCCcccC------------CCCCCCEEEccCCcCcccCCccccCC--CCCCEE
Q 003296           45 NINLQFDELVSLKSLNLSKNKF---NGFLPINLG------------KTKALEELVLSGNAFHGEIPKGIADY--RNLTLI  107 (833)
Q Consensus        45 ~~~~~f~~l~~L~~L~Ls~N~l---~~~~p~~~~------------~l~~L~~L~L~~N~l~~~~p~~~~~l--~~L~~L  107 (833)
                      ..+..+..+++|++|+|+++..   .+..|..++            .+++|++|+|++|.+++..+..+...  .+|+.|
T Consensus        64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L  143 (592)
T 3ogk_B           64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL  143 (592)
T ss_dssp             CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred             ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence            3445566777788887776432   123333333            67899999999998887666666653  459999


Q ss_pred             eccCCc-CCc-cCCccccCCCCCcEEECcCCcCCCC----CCcccccCCccCccccccccccccCChhh------hhcCC
Q 003296          108 DLSANN-LSG-SVPDRIGELSKLEVLILSANNLDGR----LPTSLASITTLSRFAANQNKFSGSVPGGI------TRFLR  175 (833)
Q Consensus       108 ~Ls~N~-l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~l~l~~n~l~~~~p~~~------~~~L~  175 (833)
                      +|++|. ++. .++.....+++|++|+|++|.+++.    ++..+..+++|+.|+++.|.+++.....+      .+.|+
T Consensus       144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~  223 (592)
T 3ogk_B          144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV  223 (592)
T ss_dssp             EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred             ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence            999987 221 1223345789999999999998766    34456678999999999999973322222      35699


Q ss_pred             EEecccccccccCCccCCCCCCCCEEecccccCc---ccCCCCC--CcCCcEEEcCCccccCCCCccccCCCCCCCEEEC
Q 003296          176 NLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLE---GSLPQNM--SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLEL  250 (833)
Q Consensus       176 ~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~---~~~p~~~--~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L  250 (833)
                      .|+|++|.+.+ +|..+..+++|+.|+++.+...   +..+..+  .++|+.|.+.++.. . ..+..+..+++|++|+|
T Consensus       224 ~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~-~l~~~~~~~~~L~~L~L  300 (592)
T 3ogk_B          224 SVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-N-EMPILFPFAAQIRKLDL  300 (592)
T ss_dssp             EEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-T-TGGGGGGGGGGCCEEEE
T ss_pred             EEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-h-HHHHHHhhcCCCcEEec
Confidence            99999999887 5677888999999999864322   1111222  26899999988642 2 23446778899999999


Q ss_pred             CCCCCCCCCC-ccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEcc-----------CCcCCCcC-chhhcCCCcC
Q 003296          251 DNNSFTGMIP-QQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQ-----------LNKLSGEI-PSQFSQLKLL  317 (833)
Q Consensus       251 ~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~-----------~N~l~~~~-p~~~~~l~~L  317 (833)
                      ++|.+++... ..+..+++|+.|+++++-..+.++..+..+++|+.|+++           .|.+++.. +..+..+++|
T Consensus       301 s~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L  380 (592)
T 3ogk_B          301 LYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL  380 (592)
T ss_dssp             TTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTC
T ss_pred             CCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccC
Confidence            9999865433 346889999999999443333344555778999999999           36676542 3334568999


Q ss_pred             ceeeccCCcCcccCcccccc-CCCCCEEEcc----CCccccc-----cCccccCCCCCCEEEccCCc--CCccCCCCcc-
Q 003296          318 STMNISWNSLSGSIPSFLSN-LTNLVNLNLR----QNNLNGS-----IPNSITNMRSLIELQLGGNQ--LSGTIPMMPP-  384 (833)
Q Consensus       318 ~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~----~N~l~~~-----~p~~~~~l~~L~~L~L~~N~--l~~~~p~~~~-  384 (833)
                      ++|+++.|.+++..+..+.. +++|+.|+++    .|.+++.     ++..+.++++|+.|+++.|.  +++..+.... 
T Consensus       381 ~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~  460 (592)
T 3ogk_B          381 EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ  460 (592)
T ss_dssp             SEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH
T ss_pred             eEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH
Confidence            99999999999877777765 8999999996    7788764     34447789999999997543  5533221111 


Q ss_pred             --cccceeecccccccc-chhhhhccCCCCCEEecccCcCccc-cchhccCCCCCCeeeCcCCccccc
Q 003296          385 --RLQIALNLSSNLFEG-PIPTTFARLNGLEVLDLSNNRFSGE-IPQLLAQMPTLTQLLLTNNQLSGV  448 (833)
Q Consensus       385 --~~~~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~  448 (833)
                        ...+.|++++|.+++ .++..+.++++|+.|++++|.+++. ++..+..+++|+.|++++|+++..
T Consensus       461 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          461 YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence              123679999999987 4566678899999999999998765 455556799999999999998754

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.94  E-value=1.4e-28  Score=281.18  Aligned_cols=190  Identities=14%  Similarity=0.095  Sum_probs=149.7

Q ss_pred             CCccccccCcccEEEEEEcCCCceEEEEEccccch----hhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          558 NPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDK----IFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       558 ~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~----~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ...+.||+|+||.||+|.. .+..+|+|+...+..    .......+.|.+|++++++++|||||++..++..++..|+|
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV  417 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM  417 (540)
T ss_dssp             ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred             CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence            3457899999999999954 678899998642211    01112245689999999999999999888888888889999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||||++|+|.++++.          +..++.|+++||+|||   +.+|+||||||+|||++.  .+||+|||+++.....
T Consensus       418 mE~~~ggsL~~~l~~----------~~~i~~qi~~aL~~LH---~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~  482 (540)
T 3en9_A          418 MSYINGKLAKDVIED----------NLDIAYKIGEIVGKLH---KNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLD  482 (540)
T ss_dssp             EECCCSEEHHHHSTT----------CTHHHHHHHHHHHHHH---HTTEECTTCCTTSEEESS--SEEECCCTTCEECCCH
T ss_pred             EECCCCCCHHHHHHH----------HHHHHHHHHHHHHHHH---HCcCccCCCCHHHEEECC--eEEEEECccCEECCCc
Confidence            999999999999974          5578999999999999   788999999999999998  9999999999987543


Q ss_pred             CCCC-----ccccccccccccccccccC--CcccccCcchhhHHHHHHHHhCCCccc
Q 003296          714 KSTG-----SLSTVAGSVGYIPPEYAYT--MRVTMAGNVYSFGVILLELLTGKTAVN  763 (833)
Q Consensus       714 ~~~~-----~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~S~Gvvl~elltg~~p~~  763 (833)
                      ....     .....+||+.|||||++..  ..|+.++|+||..+-.+|.+.++.+|.
T Consensus       483 ~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~  539 (540)
T 3en9_A          483 EDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV  539 (540)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred             cccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence            2111     1135789999999999976  668899999999999999888887763

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=2.3e-27  Score=253.54  Aligned_cols=251  Identities=22%  Similarity=0.254  Sum_probs=170.9

Q ss_pred             cccCCccCccccccccccccCChhhhhcCCEEeccccccc-ccCCccCC-------CCCCCCEEecccccCcccCCCCCC
Q 003296          146 LASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLL-GVIPIDLL-------SHPNLQTIDLSVNMLEGSLPQNMS  217 (833)
Q Consensus       146 ~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~-~~~~~~~~-------~~~~L~~L~Ls~N~l~~~~p~~~~  217 (833)
                      ++...+|+.+++++|.+  .+|..+...|+.|+|++|++. ..+|..+.       .+++|++|+|++|.+++.+|..+ 
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-  115 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL-  115 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS-
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH-
Confidence            34455566666666666  556666555777777777773 33444443       57788888888888776544321 


Q ss_pred             cCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCC-----CCCcEEEccCCccCCCChhhhCCCCC
Q 003296          218 PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSC-----RSLTLLNLAQNELNGSLPIQLGSLGI  292 (833)
Q Consensus       218 ~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~l~~  292 (833)
                                          .+..+++|++|+|++|++++. |..++.+     ++|++|+|++|++.+..|..|+.+++
T Consensus       116 --------------------~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~  174 (312)
T 1wwl_A          116 --------------------LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA  174 (312)
T ss_dssp             --------------------SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred             --------------------HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence                                025677778888888877776 6666666     77888888888887777777777788


Q ss_pred             CcEEEccCCcCCCc--Cchhh--cCCCcCceeeccCCcCcc---cCccccccCCCCCEEEccCCccccccC-ccccCCCC
Q 003296          293 LQVMNLQLNKLSGE--IPSQF--SQLKLLSTMNISWNSLSG---SIPSFLSNLTNLVNLNLRQNNLNGSIP-NSITNMRS  364 (833)
Q Consensus       293 L~~L~L~~N~l~~~--~p~~~--~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~  364 (833)
                      |+.|++++|++.+.  .|..+  ..+++|++|++++|.+++   .....+..+++|+.|+|++|++++..| ..+..+++
T Consensus       175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  254 (312)
T 1wwl_A          175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ  254 (312)
T ss_dssp             CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred             CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence            88888888877654  23333  677888888888888873   222345677888888888888887664 45666788


Q ss_pred             CCEEEccCCcCCccCCCCcccccceeeccccccccchhhhhccCCCCCEEecccCcCccccchhccCCCCCCeeeCcCCc
Q 003296          365 LIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQ  444 (833)
Q Consensus       365 L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~  444 (833)
                      |++|+|++|.|+ .+|.                      .+.  ++|+.||+++|+|++. |. +..+++|+.|++++|+
T Consensus       255 L~~L~Ls~N~l~-~ip~----------------------~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          255 LNSLNLSFTGLK-QVPK----------------------GLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             CCEEECTTSCCS-SCCS----------------------SCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCT
T ss_pred             CCEEECCCCccC-hhhh----------------------hcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCC
Confidence            888888888876 3332                      222  4567777777777765 44 6677777777777777


Q ss_pred             ccc
Q 003296          445 LSG  447 (833)
Q Consensus       445 l~~  447 (833)
                      +++
T Consensus       308 l~~  310 (312)
T 1wwl_A          308 FLD  310 (312)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=1.2e-25  Score=235.98  Aligned_cols=232  Identities=22%  Similarity=0.228  Sum_probs=175.9

Q ss_pred             CCCCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEE
Q 003296            4 CGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEEL   83 (833)
Q Consensus         4 ~~~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L   83 (833)
                      |.....-..+++++..++.+|. .-.++|++|+|++|+|+++.+..|.++++|++|+|++|+|+++.+..|..+++|++|
T Consensus         3 C~~~~~~~~~~c~~~~l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   81 (276)
T 2z62_A            3 CVEVVPNITYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL   81 (276)
T ss_dssp             SEEEETTTEEECTTSCCSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             ceeccCCceEEecCCCccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEE
Confidence            4333445678999999999986 223689999999999999998899999999999999999999888899999999999


Q ss_pred             EccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCC-CCcccccCCccCccccccccc
Q 003296           84 VLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGR-LPTSLASITTLSRFAANQNKF  162 (833)
Q Consensus        84 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~l~l~~n~l  162 (833)
                      +|++|.+++..+..|.++++|++|++++|.+++..+..|+.+++|++|+|++|.+++. +|..|..+++|+.|++++|++
T Consensus        82 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l  161 (276)
T 2z62_A           82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  161 (276)
T ss_dssp             ECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence            9999999999899999999999999999999988888899999999999999999874 588888887766666666655


Q ss_pred             cccCChhhhhcCCEEecccccccccCCccCCCCCCCC----EEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccc
Q 003296          163 SGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQ----TIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSAT  238 (833)
Q Consensus       163 ~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~----~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~  238 (833)
                      ++..                      +..+..+++|+    .|++++|.+++..+.                       .
T Consensus       162 ~~~~----------------------~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~-----------------------~  196 (276)
T 2z62_A          162 QSIY----------------------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-----------------------A  196 (276)
T ss_dssp             CEEC----------------------GGGGHHHHTCTTCCEEEECCSSCCCEECTT-----------------------S
T ss_pred             CcCC----------------------HHHhhhhhhccccceeeecCCCcccccCcc-----------------------c
Confidence            5433                      33333333333    566666666533221                       1


Q ss_pred             cCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCC
Q 003296          239 FTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGS  282 (833)
Q Consensus       239 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  282 (833)
                      |. ..+|++|+|++|++++..+..|..+++|+.|+|++|++.+.
T Consensus       197 ~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          197 FK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             SC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred             cC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence            21 12455666666666555555555666666666666666543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=5.5e-27  Score=265.83  Aligned_cols=236  Identities=22%  Similarity=0.216  Sum_probs=176.5

Q ss_pred             CCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEe
Q 003296           29 FAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLID  108 (833)
Q Consensus        29 l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  108 (833)
                      +++|+.|+|++|.|+++.+..|..+++|++|+|++|.|++..|  |..+++|++|+|++|.|++..+     .++|+.|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            4489999999999998888899999999999999999987665  8889999999999999886543     37899999


Q ss_pred             ccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccC
Q 003296          109 LSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVI  188 (833)
Q Consensus       109 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~  188 (833)
                      |++|.|++..+.   .+++|++|+|++|.|++..|..|+.+++|                      +.|+|++|.+.+..
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L----------------------~~L~Ls~N~l~~~~  160 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV----------------------QYLDLKLNEIDTVN  160 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSE----------------------EEEECTTSCCCEEE
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCC----------------------CEEECCCCCCCCcC
Confidence            999999876654   35788999999999988877777766654                      44555555555555


Q ss_pred             CccCC-CCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCC
Q 003296          189 PIDLL-SHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCR  267 (833)
Q Consensus       189 ~~~~~-~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~  267 (833)
                      |..+. .+++|++|+|++|.+++..+                         +..+++|++|+|++|.+++..| .+..++
T Consensus       161 ~~~l~~~l~~L~~L~Ls~N~l~~~~~-------------------------~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~  214 (487)
T 3oja_A          161 FAELAASSDTLEHLNLQYNFIYDVKG-------------------------QVVFAKLKTLDLSSNKLAFMGP-EFQSAA  214 (487)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEEEC-------------------------CCCCTTCCEEECCSSCCCEECG-GGGGGT
T ss_pred             hHHHhhhCCcccEEecCCCccccccc-------------------------cccCCCCCEEECCCCCCCCCCH-hHcCCC
Confidence            55554 56777777777777764311                         1236677777777777776544 377777


Q ss_pred             CCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCC-CcCchhhcCCCcCceeecc
Q 003296          268 SLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLS-GEIPSQFSQLKLLSTMNIS  323 (833)
Q Consensus       268 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~Ls  323 (833)
                      +|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       215 ~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          215 GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            77777777777774 5666777777777888877777 5667777778888888776

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=8.4e-27  Score=264.32  Aligned_cols=238  Identities=21%  Similarity=0.212  Sum_probs=197.4

Q ss_pred             CCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEE
Q 003296           52 ELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVL  131 (833)
Q Consensus        52 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  131 (833)
                      .+++|++|+|++|.|+++.|..|..+++|++|+|++|.+++..|  |..+++|++|+|++|.|++..+     .++|++|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence            34489999999999998888899999999999999999987665  8899999999999999886443     3789999


Q ss_pred             ECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCccc
Q 003296          132 ILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGS  211 (833)
Q Consensus       132 ~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~  211 (833)
                      +|++|.|++..+..+                         +.|+.|+|++|.+.+..|..+..+++|++|+|++|.+++.
T Consensus       105 ~L~~N~l~~~~~~~l-------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (487)
T 3oja_A          105 HAANNNISRVSCSRG-------------------------QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (487)
T ss_dssp             ECCSSCCCCEEECCC-------------------------SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE
T ss_pred             ECcCCcCCCCCcccc-------------------------CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc
Confidence            999998886543321                         2377888888888888888888889999999999988754


Q ss_pred             CCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCC
Q 003296          212 LPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLG  291 (833)
Q Consensus       212 ~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  291 (833)
                      .|.                      ..+..+++|+.|+|++|.+++..+  +..+++|+.|+|++|.+++..| .+..++
T Consensus       160 ~~~----------------------~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~  214 (487)
T 3oja_A          160 NFA----------------------ELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAA  214 (487)
T ss_dssp             EGG----------------------GGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGT
T ss_pred             ChH----------------------HHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCC
Confidence            332                      222368899999999999998743  4469999999999999997555 589999


Q ss_pred             CCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCc-ccCccccccCCCCCEEEcc
Q 003296          292 ILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLS-GSIPSFLSNLTNLVNLNLR  347 (833)
Q Consensus       292 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~  347 (833)
                      +|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       215 ~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          215 GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            99999999999996 6777899999999999999998 7778888888888888886

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=3e-25  Score=232.86  Aligned_cols=205  Identities=24%  Similarity=0.249  Sum_probs=175.5

Q ss_pred             CCCCEEECCCCCCCCcc--cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296            8 DGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL   85 (833)
Q Consensus         8 ~~L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   85 (833)
                      ++|+.|++++|.++.++  .|..+++|++|+|++|+|+++.+..|.++++|++|+|++|.|+++.+..|.++++|++|+|
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            46999999999999985  6899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcCcccCCccccCCCCCCEEeccCCcCCcc-CCccccCCCCCcEEECcCCcCCCCCCcccccCCccC----ccccccc
Q 003296           86 SGNAFHGEIPKGIADYRNLTLIDLSANNLSGS-VPDRIGELSKLEVLILSANNLDGRLPTSLASITTLS----RFAANQN  160 (833)
Q Consensus        86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~l~l~~n  160 (833)
                      ++|.+++..+..+..+++|++|+|++|.+++. +|..|+++++|++|+|++|.+++..+..|..+.+|+    .+++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            99999988888899999999999999999875 589999999999999999999998888888887777    6677777


Q ss_pred             cccccCChhh-hhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccC
Q 003296          161 KFSGSVPGGI-TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSL  212 (833)
Q Consensus       161 ~l~~~~p~~~-~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~  212 (833)
                      .+++..+..+ ...|+.|+|++|++++..+..|..+++|+.|+|++|.+....
T Consensus       188 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          188 PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             cccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence            7765544433 224777777777777665555666777777777777766543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=1.1e-24  Score=227.58  Aligned_cols=202  Identities=24%  Similarity=0.266  Sum_probs=176.4

Q ss_pred             CCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccC
Q 003296            8 DGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSG   87 (833)
Q Consensus         8 ~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~   87 (833)
                      .+.+.+++++|.++.+|. .-.++|+.|+|++|+|+.+.+..|.++++|++|+|++|+|+.+.+..|..+++|++|+|++
T Consensus        16 ~~~~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCCEEEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            468899999999999985 2237899999999999999988999999999999999999988888899999999999999


Q ss_pred             CcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCC
Q 003296           88 NAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVP  167 (833)
Q Consensus        88 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p  167 (833)
                      |.+++..+..|..+++|++|+|++|++++..+..|+.+++|++|+|++|.|++..+..|..+++|+.|++++|.+++..+
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence            99998888899999999999999999999999999999999999999999998888889999998888888888876555


Q ss_pred             hhh--hhcCCEEecccccccccCCccCCCCCCCCEEecccccCcc
Q 003296          168 GGI--TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEG  210 (833)
Q Consensus       168 ~~~--~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~  210 (833)
                      ..+  .+.|+.|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            444  3567888888888777666667777788888888877653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=3.5e-25  Score=231.58  Aligned_cols=225  Identities=23%  Similarity=0.304  Sum_probs=158.0

Q ss_pred             CEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcC
Q 003296           11 KLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAF   90 (833)
Q Consensus        11 ~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l   90 (833)
                      ..+++.++.+..+.....+++|+.|++++|.++.+.  .+..+++|++|+|++|.++++  ..+..+++|++|+|++|.+
T Consensus        22 ~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l   97 (272)
T 3rfs_A           22 IKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQL   97 (272)
T ss_dssp             HHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCC
T ss_pred             HHHHhcCcccccccccccccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCcc
Confidence            344566666666655666777788888887776432  467777888888888877753  3677777888888888888


Q ss_pred             cccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhh
Q 003296           91 HGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGI  170 (833)
Q Consensus        91 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~  170 (833)
                      ++..+..|..+++|++|+|++|++++..+..|+.+++|++|+|++|.+++..+..|..+++                   
T Consensus        98 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-------------------  158 (272)
T 3rfs_A           98 QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN-------------------  158 (272)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-------------------
T ss_pred             CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc-------------------
Confidence            7777777777888888888888887777777777888888888888777666655555544                   


Q ss_pred             hhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEEC
Q 003296          171 TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLEL  250 (833)
Q Consensus       171 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L  250 (833)
                         |+.|+|++|++++..+..+..+++|++|+|++|.+++.                       ++..|..+++|++|+|
T Consensus       159 ---L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------------------~~~~~~~l~~L~~L~l  212 (272)
T 3rfs_A          159 ---LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV-----------------------PDGVFDRLTSLQYIWL  212 (272)
T ss_dssp             ---CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-----------------------CTTTTTTCTTCCEEEC
T ss_pred             ---CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc-----------------------CHHHHhCCcCCCEEEc
Confidence               45555555655555555566777788888887777632                       2334566777777777


Q ss_pred             CCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCC
Q 003296          251 DNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLG  291 (833)
Q Consensus       251 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  291 (833)
                      ++|.+.+       .+++|+.|++..|.++|.+|..++.+.
T Consensus       213 ~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          213 HDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             CSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             cCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence            7776653       355677777788888777777766554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=9.5e-24  Score=220.46  Aligned_cols=202  Identities=25%  Similarity=0.313  Sum_probs=131.8

Q ss_pred             CCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecc
Q 003296           31 GLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLS  110 (833)
Q Consensus        31 ~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  110 (833)
                      +.+.+++++|+++.+.. .+.  ++|++|+|++|+|+++.+..|..+++|++|+|++|.++.+.+..|.++++|++|+|+
T Consensus        17 ~~~~l~~~~~~l~~ip~-~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPS-NIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSSCCS-CCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCccCC-CCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            46778888888876443 332  578888888888887777778888888888888888876666667778888888888


Q ss_pred             CCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCc
Q 003296          111 ANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPI  190 (833)
Q Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~  190 (833)
                      +|+++++.+..|.++++|++|+|++|.+++..+..|..+++                      |++|+|++|++.+..+.
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~----------------------L~~L~Ls~n~l~~~~~~  151 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK----------------------LTYLSLGYNELQSLPKG  151 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT----------------------CCEEECCSSCCCCCCTT
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC----------------------CCEEECCCCcCCccCHh
Confidence            88887777777777888888888877777665555544443                      44444444444444444


Q ss_pred             cCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCc
Q 003296          191 DLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLT  270 (833)
Q Consensus       191 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  270 (833)
                      .|..+++|+.|+|++|.+++                       +++..|..+++|++|+|++|++++..+..|..+++|+
T Consensus       152 ~~~~l~~L~~L~L~~n~l~~-----------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (270)
T 2o6q_A          152 VFDKLTSLKELRLYNNQLKR-----------------------VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK  208 (270)
T ss_dssp             TTTTCTTCCEEECCSSCCSC-----------------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             HccCCcccceeEecCCcCcE-----------------------eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence            45555556666665555442                       2233445556666666666666655555555566666


Q ss_pred             EEEccCCccC
Q 003296          271 LLNLAQNELN  280 (833)
Q Consensus       271 ~L~L~~N~l~  280 (833)
                      .|+|++|++.
T Consensus       209 ~L~l~~N~~~  218 (270)
T 2o6q_A          209 MLQLQENPWD  218 (270)
T ss_dssp             EEECCSSCBC
T ss_pred             EEEecCCCee
Confidence            6666666554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=2.8e-24  Score=226.48  Aligned_cols=201  Identities=23%  Similarity=0.229  Sum_probs=169.7

Q ss_pred             CCCCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEE
Q 003296            4 CGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEEL   83 (833)
Q Consensus         4 ~~~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L   83 (833)
                      |+++++++.+++++|.++.+|. .-.++++.|+|++|+|+++.+..|.++++|++|+|++|.|+++.+.  +.+++|++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L   82 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL   82 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred             ccccCCccEEECCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence            5789999999999999999985 2247899999999999999999999999999999999999976553  789999999


Q ss_pred             EccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCcccccccccc
Q 003296           84 VLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFS  163 (833)
Q Consensus        84 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~  163 (833)
                      +|++|.|+ .+|..+..+++|++|+|++|+|+++.+..|.++++|++|+|++|+|++..+..|..+++|+.|++++|+++
T Consensus        83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            99999998 67888999999999999999999988899999999999999999999988888888888888888877777


Q ss_pred             ccCChhh--hhcCCEEecccccccccCCccCCCCCCCCEEecccccCc
Q 003296          164 GSVPGGI--TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLE  209 (833)
Q Consensus       164 ~~~p~~~--~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~  209 (833)
                      ...+..+  ...|+.|+|++|+++ .+|..+...++|+.|+|++|.+.
T Consensus       162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            4433332  345777777777776 34555666667777777777654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.92  E-value=2.4e-24  Score=225.20  Aligned_cols=204  Identities=20%  Similarity=0.229  Sum_probs=187.7

Q ss_pred             CCCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEE
Q 003296            5 GGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELV   84 (833)
Q Consensus         5 ~~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~   84 (833)
                      ..+++|+.|++++|.++.++.+..+++|++|+|++|+++++  ..|..+++|++|+|++|.|+++.+..|..+++|++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            35688999999999999999999999999999999999975  4799999999999999999999888899999999999


Q ss_pred             ccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccc
Q 003296           85 LSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSG  164 (833)
Q Consensus        85 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~  164 (833)
                      |++|.+++..+..|..+++|++|+|++|++++..+..|+.+++|++|+|++|++++..+..|..+++|+.|++++|++++
T Consensus       116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (272)
T 3rfs_A          116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS  195 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence            99999998888889999999999999999999888889999999999999999999888889999999999999999998


Q ss_pred             cCChhh--hhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCC
Q 003296          165 SVPGGI--TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS  217 (833)
Q Consensus       165 ~~p~~~--~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~  217 (833)
                      ..|..+  .+.|+.|+|++|.+.+.       +++|+.|+++.|.++|.+|..++
T Consensus       196 ~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~  243 (272)
T 3rfs_A          196 VPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAG  243 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred             cCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccc
Confidence            777544  56799999999988753       56899999999999999998765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=3.6e-23  Score=218.03  Aligned_cols=118  Identities=24%  Similarity=0.142  Sum_probs=66.9

Q ss_pred             ccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCC
Q 003296           26 FNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLT  105 (833)
Q Consensus        26 f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  105 (833)
                      +..+++++.+++++|+++.+.+..+   ++|++|+|++|.|+++.|..|..+++|++|+|++|.|++..+.  +.+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            4455666666666666665443222   4566666666666665556666666666666666666544332  5556666


Q ss_pred             EEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccC
Q 003296          106 LIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASI  149 (833)
Q Consensus       106 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  149 (833)
                      +|+|++|+|+ .+|..+..+++|++|+|++|+|++..|..|..+
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l  123 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL  123 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCC
Confidence            6666666665 344555556666666666665554444444333

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.91  E-value=7.2e-24  Score=217.15  Aligned_cols=134  Identities=10%  Similarity=0.182  Sum_probs=97.4

Q ss_pred             EEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCc-CCCCCCcccCCCCCCCEEEccC-Cc
Q 003296           12 LLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNK-FNGFLPINLGKTKALEELVLSG-NA   89 (833)
Q Consensus        12 ~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-N~   89 (833)
                      .+++.+  ++.+|.  -.++|++|+|++|+|+++.+..|.++++|++|+|++|+ ++.+.+..|.++++|++|+|++ |.
T Consensus        17 ~v~c~~--l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~   92 (239)
T 2xwt_C           17 RVTCKD--IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN   92 (239)
T ss_dssp             EEEECS--CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT
T ss_pred             eeEccC--ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC
Confidence            344544  777776  34478888888888888777788888888888888886 7777777787888888888887 77


Q ss_pred             CcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCc---EEECcCC-cCCCCCCcccccCCc
Q 003296           90 FHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLE---VLILSAN-NLDGRLPTSLASITT  151 (833)
Q Consensus        90 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~  151 (833)
                      ++++.+..|.++++|+.|+|++|++++ +|. |..+++|+   +|++++| .+++..+..|..+++
T Consensus        93 l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~  156 (239)
T 2xwt_C           93 LTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCN  156 (239)
T ss_dssp             CCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBS
T ss_pred             eeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhc
Confidence            877777777777778888887777775 444 77777776   7777777 666555555555444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=8.3e-27  Score=272.96  Aligned_cols=321  Identities=14%  Similarity=0.114  Sum_probs=165.4

Q ss_pred             CCCCCCEEeCcCCcCCCCCCcccC-CCCCCCEEEccCC-cCccc-CCccccCCCCCCEEeccCCcCCccCCcccc----C
Q 003296           52 ELVSLKSLNLSKNKFNGFLPINLG-KTKALEELVLSGN-AFHGE-IPKGIADYRNLTLIDLSANNLSGSVPDRIG----E  124 (833)
Q Consensus        52 ~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----~  124 (833)
                      .+++|++|+|++|.+++..+..+. .+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+.    .
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            455566666666555544333333 3555666666555 33321 223333555566666666655443322222    4


Q ss_pred             CCCCcEEECcCCcCCCCCCcc----cccCCccCccccccccccccCChhh--hhcCCEEecc-------cccccccCCcc
Q 003296          125 LSKLEVLILSANNLDGRLPTS----LASITTLSRFAANQNKFSGSVPGGI--TRFLRNLDLS-------YNKLLGVIPID  191 (833)
Q Consensus       125 l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~l~l~~n~l~~~~p~~~--~~~L~~L~Ls-------~N~l~~~~~~~  191 (833)
                      +++|++|+|++|. .......    +..+++|+.|++++|...+.+|..+  .+.|+.|+++       .|.+.+. +..
T Consensus       183 ~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l-~~~  260 (594)
T 2p1m_B          183 YTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL-SVA  260 (594)
T ss_dssp             CCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH-HHH
T ss_pred             CCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHH-HHH
Confidence            4456666666554 1111111    1234555666665552111122222  2346666533       3333332 224


Q ss_pred             CCCCCCCCEE-ecccccCcccCCCCC--CcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCC-CCccccCCC
Q 003296          192 LLSHPNLQTI-DLSVNMLEGSLPQNM--SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGM-IPQQLGSCR  267 (833)
Q Consensus       192 ~~~~~~L~~L-~Ls~N~l~~~~p~~~--~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~  267 (833)
                      +.++++|+.| .+..... +.++...  .++|+.|++++|.+........+..+++|+.|++++| ++.. .+.....++
T Consensus       261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~  338 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK  338 (594)
T ss_dssp             HHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred             HhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence            5666677766 3332221 1222221  2567777777776432222223456777888888776 3321 122233577


Q ss_pred             CCcEEEcc---------CCccCCCChhhh-CCCCCCcEEEccCCcCCCcCchhhc-CCCcCceeecc--C----CcCccc
Q 003296          268 SLTLLNLA---------QNELNGSLPIQL-GSLGILQVMNLQLNKLSGEIPSQFS-QLKLLSTMNIS--W----NSLSGS  330 (833)
Q Consensus       268 ~L~~L~L~---------~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls--~----N~l~~~  330 (833)
                      +|+.|++.         .+.+++.....+ ..+++|+.|.++.|.+++..+..+. .+++|+.|+++  +    |.++..
T Consensus       339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~  418 (594)
T 2p1m_B          339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE  418 (594)
T ss_dssp             TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred             CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence            78888773         334443222222 2367777777777777765555554 47778888887  3    445421


Q ss_pred             -----CccccccCCCCCEEEccCCccccccCccccC-CCCCCEEEccCCcCCc
Q 003296          331 -----IPSFLSNLTNLVNLNLRQNNLNGSIPNSITN-MRSLIELQLGGNQLSG  377 (833)
Q Consensus       331 -----~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~  377 (833)
                           ++..+..+++|+.|+|++ .+++..+..+.. +++|+.|+|++|.+++
T Consensus       419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~  470 (594)
T 2p1m_B          419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSD  470 (594)
T ss_dssp             CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSH
T ss_pred             chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcH
Confidence                 122356677888888866 555544444444 7778888888777653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=2.3e-23  Score=215.02  Aligned_cols=181  Identities=27%  Similarity=0.251  Sum_probs=160.4

Q ss_pred             CCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccC
Q 003296            8 DGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSG   87 (833)
Q Consensus         8 ~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~   87 (833)
                      ++.+.++++++.++.+|. .-.++|+.|+|++|+|+++.+..|.++++|++|+|++|+|+++.|..|..+++|++|+|++
T Consensus        14 ~~~~~l~~~~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGGTEEECTTCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCCeEEecCCCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            567899999999999985 2237899999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCC
Q 003296           88 NAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVP  167 (833)
Q Consensus        88 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p  167 (833)
                      |.+++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++                
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~----------------  156 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN----------------  156 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT----------------
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC----------------
Confidence            9999888899999999999999999999888888999999999999999999887777777665                


Q ss_pred             hhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCccc
Q 003296          168 GGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGS  211 (833)
Q Consensus       168 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~  211 (833)
                            |+.|+|++|++.+..+..|..+++|+.|+|++|.+...
T Consensus       157 ------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          157 ------LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             ------CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             ------CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence                  55666777777766666777888889999998888654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=1.8e-26  Score=270.05  Aligned_cols=365  Identities=16%  Similarity=0.144  Sum_probs=187.5

Q ss_pred             CCCCCCEEEccCCcCcccCCcccc-CCCCCCEEeccCC-cCCcc-CCccccCCCCCcEEECcCCcCCCCCCcccc----c
Q 003296           76 KTKALEELVLSGNAFHGEIPKGIA-DYRNLTLIDLSAN-NLSGS-VPDRIGELSKLEVLILSANNLDGRLPTSLA----S  148 (833)
Q Consensus        76 ~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~----~  148 (833)
                      .+++|++|+|++|.+++..+..+. .+++|+.|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+.    .
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            456677777777766655555554 4667777777776 34321 333344667777777777766654443333    4


Q ss_pred             CCccCcccccccc--ccccCChhh---hhcCCEEecccccccccCCccCCCCCCCCEEeccccc-------CcccCCCCC
Q 003296          149 ITTLSRFAANQNK--FSGSVPGGI---TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNM-------LEGSLPQNM  216 (833)
Q Consensus       149 l~~L~~l~l~~n~--l~~~~p~~~---~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~-------l~~~~p~~~  216 (833)
                      +++|+.|++++|.  ++......+   .+.|++|+|++|...+.++..+..+++|+.|+++.+.       +.+..+ .+
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~-~l  261 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV-AL  261 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH-HH
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH-HH
Confidence            4567777776665  211101111   2457777777662222245555566677777654332       222111 11


Q ss_pred             --CcCCcEE-EcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCC-ccccCCCCCcEEEccCCccCC-CChhhhCCCC
Q 003296          217 --SPNLVRL-RLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIP-QQLGSCRSLTLLNLAQNELNG-SLPIQLGSLG  291 (833)
Q Consensus       217 --~~~L~~L-~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~  291 (833)
                        .++|+.| .+..... ..+ +..+..+++|++|+|++|.+++... ..+..+++|+.|++++| +.. .++.....++
T Consensus       262 ~~~~~L~~Ls~~~~~~~-~~l-~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~  338 (594)
T 2p1m_B          262 SGCKELRCLSGFWDAVP-AYL-PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK  338 (594)
T ss_dssp             HTCTTCCEEECCBTCCG-GGG-GGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred             hcCCCcccccCCcccch-hhH-HHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence              1455555 2222211 111 1122345677777777776553221 22446677777777766 321 1222223466


Q ss_pred             CCcEEEcc---------CCcCCCcCchhhc-CCCcCceeeccCCcCcccCccccc-cCCCCCEEEcc--C----Cccccc
Q 003296          292 ILQVMNLQ---------LNKLSGEIPSQFS-QLKLLSTMNISWNSLSGSIPSFLS-NLTNLVNLNLR--Q----NNLNGS  354 (833)
Q Consensus       292 ~L~~L~L~---------~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~--~----N~l~~~  354 (833)
                      +|+.|+++         .+.+++.....+. .+++|+.|+++.|.+++.....+. .+++|+.|+|+  +    |.++..
T Consensus       339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~  418 (594)
T 2p1m_B          339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE  418 (594)
T ss_dssp             TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred             CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence            67777662         2344433222222 366677777666666654444443 46677777776  3    444421


Q ss_pred             -----cCccccCCCCCCEEEccCCcCCccCCCCc---ccccceeeccccccccchhhhh-ccCCCCCEEecccCcCcccc
Q 003296          355 -----IPNSITNMRSLIELQLGGNQLSGTIPMMP---PRLQIALNLSSNLFEGPIPTTF-ARLNGLEVLDLSNNRFSGEI  425 (833)
Q Consensus       355 -----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~---~~~~~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~  425 (833)
                           ++..+..+++|+.|+|++ .+++..+...   ....+.|++++|.+++..+..+ ..+++|+.|++++|.+++..
T Consensus       419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~  497 (594)
T 2p1m_B          419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA  497 (594)
T ss_dssp             CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHH
T ss_pred             chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHH
Confidence                 112245566777777755 4432211111   0112456666666655444443 45666666666666664433


Q ss_pred             ch-hccCCCCCCeeeCcCCcc
Q 003296          426 PQ-LLAQMPTLTQLLLTNNQL  445 (833)
Q Consensus       426 p~-~~~~l~~L~~L~ls~N~l  445 (833)
                      .. ....+++|+.|++++|++
T Consensus       498 ~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          498 LLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHHHhCCCCCEEeeeCCCC
Confidence            32 333456666666666655

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.90  E-value=1.2e-23  Score=215.42  Aligned_cols=191  Identities=17%  Similarity=0.227  Sum_probs=136.1

Q ss_pred             CCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCc-CcccCCccccCCCCCCEEeccC-CcCCccC
Q 003296           41 NLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNA-FHGEIPKGIADYRNLTLIDLSA-NNLSGSV  118 (833)
Q Consensus        41 ~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~  118 (833)
                      +++.++.  +.  .+|++|+|++|+|+++.+..|..+++|++|+|++|. ++.+.+..|.++++|++|+|++ |+++++.
T Consensus        22 ~l~~ip~--~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~   97 (239)
T 2xwt_C           22 DIQRIPS--LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID   97 (239)
T ss_dssp             SCSSCCC--CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred             CccccCC--CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence            3654433  43  389999999999998888889999999999999997 8877778899999999999998 8998888


Q ss_pred             CccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccc-cccccCCccCCCCCC
Q 003296          119 PDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYN-KLLGVIPIDLLSHPN  197 (833)
Q Consensus       119 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N-~l~~~~~~~~~~~~~  197 (833)
                      +..|.++++|++|+|++|.+++ +|. |..+++|+.                   |+.|++++| ++.++.+..|..+++
T Consensus        98 ~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~-------------------L~~L~l~~N~~l~~i~~~~~~~l~~  156 (239)
T 2xwt_C           98 PDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDI-------------------FFILEITDNPYMTSIPVNAFQGLCN  156 (239)
T ss_dssp             TTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCS-------------------EEEEEEESCTTCCEECTTTTTTTBS
T ss_pred             HHHhCCCCCCCEEeCCCCCCcc-ccc-ccccccccc-------------------ccEEECCCCcchhhcCcccccchhc
Confidence            8889999999999999999886 444 555544331                   336777777 777666666777778


Q ss_pred             CC-EEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCC-CCCCCCccccCC-CCCcEEEc
Q 003296          198 LQ-TIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNS-FTGMIPQQLGSC-RSLTLLNL  274 (833)
Q Consensus       198 L~-~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l-~~L~~L~L  274 (833)
                      |+ .|++++|.++. +|                      ...|.. ++|+.|+|++|+ +++..+..|.++ ++|+.|++
T Consensus       157 L~~~L~l~~n~l~~-i~----------------------~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l  212 (239)
T 2xwt_C          157 ETLTLKLYNNGFTS-VQ----------------------GYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV  212 (239)
T ss_dssp             SEEEEECCSCCCCE-EC----------------------TTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred             ceeEEEcCCCCCcc-cC----------------------HhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence            88 88888777762 22                      223333 455555555553 554445555555 55555555


Q ss_pred             cCCccC
Q 003296          275 AQNELN  280 (833)
Q Consensus       275 ~~N~l~  280 (833)
                      ++|+++
T Consensus       213 ~~N~l~  218 (239)
T 2xwt_C          213 SQTSVT  218 (239)
T ss_dssp             TTCCCC
T ss_pred             CCCccc
Confidence            555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.89  E-value=3.3e-23  Score=220.48  Aligned_cols=193  Identities=21%  Similarity=0.331  Sum_probs=154.8

Q ss_pred             CCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296            6 GIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL   85 (833)
Q Consensus         6 ~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   85 (833)
                      ++++|+.|++++|.++.++.+..+++|++|+|++|+++.+.+  |..+++|++|+|++|+|+++  ..+..+++|++|+|
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l  114 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL  114 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred             HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence            467889999999999888888889999999999999987766  88899999999999998864  36888999999999


Q ss_pred             cCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCcccccccccccc
Q 003296           86 SGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGS  165 (833)
Q Consensus        86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~  165 (833)
                      ++|.+++..  .+..+++|+.|+|++|.+++..+  ++.+++|++|+|++|.+++..+  +..+++|+.|++++|.+++.
T Consensus       115 ~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~  188 (308)
T 1h6u_A          115 TSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI  188 (308)
T ss_dssp             TTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence            999988643  38889999999999999886544  8888999999999999886544  77888888888888888765


Q ss_pred             CChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcc
Q 003296          166 VPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEG  210 (833)
Q Consensus       166 ~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~  210 (833)
                      .+-...+.|+.|+|++|++.+..+  +..+++|+.|+|++|.+++
T Consensus       189 ~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          189 SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             GGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             hhhcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            443335567778888887776553  6677777777777777753

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.89  E-value=6.5e-23  Score=222.63  Aligned_cols=240  Identities=16%  Similarity=0.119  Sum_probs=175.8

Q ss_pred             CEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCC-CCCcccCCCCCCCE-EEccCC
Q 003296           11 KLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNG-FLPINLGKTKALEE-LVLSGN   88 (833)
Q Consensus        11 ~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~-L~L~~N   88 (833)
                      +++++++|+|++||. .-.+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+ +.+.+|.++++|++ +++++|
T Consensus        12 ~~v~C~~~~Lt~iP~-~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           12 RVFLCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             TEEEEESTTCCSCCT-TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             CEEEecCCCCCccCc-CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence            689999999999986 225789999999999999999999999999999999999865 45568999998775 677789


Q ss_pred             cCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcC-CcCCCCCCcccccCC-ccCccccccccccccC
Q 003296           89 AFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSA-NNLDGRLPTSLASIT-TLSRFAANQNKFSGSV  166 (833)
Q Consensus        89 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~-~L~~l~l~~n~l~~~~  166 (833)
                      +++.+.|..|..+++|++|++++|+|+...+..+....++..|++++ |+++...+..|..+. .++.|++++|+++...
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~  170 (350)
T 4ay9_X           91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH  170 (350)
T ss_dssp             TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred             cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence            99999999999999999999999999988888888888999999966 677776667777664 4566667777666433


Q ss_pred             Chhh-hhcCCEEeccc-ccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCC
Q 003296          167 PGGI-TRFLRNLDLSY-NKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEK  244 (833)
Q Consensus       167 p~~~-~~~L~~L~Ls~-N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~  244 (833)
                      +..+ ...|+.|++++ |.+..+.+..|..+++|++|||++|+|+                       .+|...   +.+
T Consensus       171 ~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-----------------------~lp~~~---~~~  224 (350)
T 4ay9_X          171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-----------------------SLPSYG---LEN  224 (350)
T ss_dssp             TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-----------------------CCCSSS---CTT
T ss_pred             hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-----------------------ccChhh---hcc
Confidence            3322 23466666653 4444443445566666666666666665                       244333   334


Q ss_pred             CCEEECCCCCCCCCCCccccCCCCCcEEEccCCc
Q 003296          245 LTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNE  278 (833)
Q Consensus       245 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  278 (833)
                      |+.|.+.++.-...+| .+.++++|+.+++.++.
T Consensus       225 L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          225 LKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             CCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred             chHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence            5555544443333444 36677777777776543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=1.1e-23  Score=224.91  Aligned_cols=224  Identities=20%  Similarity=0.210  Sum_probs=165.5

Q ss_pred             CCCCCEEECCCCCCCCccc---ccccCCCCCCEEeCcCCcCCCCCCccc--CCCCCCCEEEccCCcCcccCC----cccc
Q 003296           29 FAGLEVLDFSSNNLNGNIN---LQFDELVSLKSLNLSKNKFNGFLPINL--GKTKALEELVLSGNAFHGEIP----KGIA   99 (833)
Q Consensus        29 l~~L~~L~Ls~N~l~~~~~---~~f~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~   99 (833)
                      ...++.|.+.++.++...-   ..+..+++|++|+|++|.+++..|..+  ..+++|++|+|++|.+++..+    ..+.
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            3457888888887753211   123345779999999999998888888  889999999999999987555    4566


Q ss_pred             CCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCC---C-CcccccCCccCcccccccccccc--CChhh---
Q 003296          100 DYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGR---L-PTSLASITTLSRFAANQNKFSGS--VPGGI---  170 (833)
Q Consensus       100 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~-p~~~~~l~~L~~l~l~~n~l~~~--~p~~~---  170 (833)
                      .+++|++|+|++|++++..+..|+.+++|++|+|++|++.+.   . +..+..+++|+.|++++|+++..  .+..+   
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            789999999999999988888999999999999999998752   2 23346788888888888888632  11112   


Q ss_pred             hhcCCEEecccccccccCCccCCCC---CCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCE
Q 003296          171 TRFLRNLDLSYNKLLGVIPIDLLSH---PNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTY  247 (833)
Q Consensus       171 ~~~L~~L~Ls~N~l~~~~~~~~~~~---~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~  247 (833)
                      ...|++|+|++|++.+..|..+..+   ++|++|+|++|+++ .+|..+.                         ++|++
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-------------------------~~L~~  276 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-------------------------AKLRV  276 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-------------------------SCCSC
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-------------------------CCCCE
Confidence            3568888888888888777666665   58888888888877 3343222                         56777


Q ss_pred             EECCCCCCCCCCCccccCCCCCcEEEccCCccC
Q 003296          248 LELDNNSFTGMIPQQLGSCRSLTLLNLAQNELN  280 (833)
Q Consensus       248 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  280 (833)
                      |+|++|++++. |. +..+++|+.|+|++|+++
T Consensus       277 L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          277 LDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             EECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred             EECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence            77777777754 22 566777777777777765

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.89  E-value=2.4e-24  Score=225.51  Aligned_cols=159  Identities=12%  Similarity=-0.007  Sum_probs=124.2

Q ss_pred             cCCccccccCcccEEEEEEcCCCceEEEEEccccchhhh-c-------------cChhHHHHHHHHHhcCCCCCcccceE
Q 003296          557 ANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQ-L-------------GSHHKFDKELEVLGKLSNSNVMTPLA  622 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~-~-------------~~~~~~~~E~~~l~~l~H~niv~~~~  622 (833)
                      |...+.||+|+||.||+|...+|+.||||.++....... .             .....|.+|+++|++++  | +++.+
T Consensus        92 ~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~-~~v~~  168 (282)
T 1zar_A           92 DAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G-LAVPK  168 (282)
T ss_dssp             SEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T-SSSCC
T ss_pred             EEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C-CCcCe
Confidence            344589999999999999998899999999942211110 0             12457999999999998  5 77777


Q ss_pred             EEecCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceec
Q 003296          623 YVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIG  702 (833)
Q Consensus       623 ~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~  702 (833)
                      ++. .+..|+|||||++|+|.+ +..        .....++.|+++||+|||   +.+|+||||||+|||++ ++.+||+
T Consensus       169 ~~~-~~~~~lvmE~~~g~~L~~-l~~--------~~~~~i~~qi~~~l~~lH---~~giiHrDlkp~NILl~-~~~vkl~  234 (282)
T 1zar_A          169 VYA-WEGNAVLMELIDAKELYR-VRV--------ENPDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVS-EEGIWII  234 (282)
T ss_dssp             EEE-EETTEEEEECCCCEEGGG-CCC--------SCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEE-TTEEEEC
T ss_pred             EEe-ccceEEEEEecCCCcHHH-cch--------hhHHHHHHHHHHHHHHHH---HCCCEeCCCCHHHEEEE-CCcEEEE
Confidence            554 466799999999999998 532        123469999999999999   78999999999999999 9999999


Q ss_pred             cceeeeeeCCCCCCCccccccccccccccccccC----------CcccccCcchh
Q 003296          703 DIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT----------MRVTMAGNVYS  747 (833)
Q Consensus       703 dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~----------~~~~~~~Dv~S  747 (833)
                      |||+|+.               +..|+|||++..          .+|..++|+|.
T Consensus       235 DFG~a~~---------------~~~~~a~e~l~rdv~~i~~~f~~~~~~~~~~~~  274 (282)
T 1zar_A          235 DFPQSVE---------------VGEEGWREILERDVRNIITYFSRTYRTEKDINS  274 (282)
T ss_dssp             CCTTCEE---------------TTSTTHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_pred             ECCCCeE---------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCChHH
Confidence            9999863               335789998753          45666677765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.89  E-value=1.7e-22  Score=215.08  Aligned_cols=206  Identities=24%  Similarity=0.386  Sum_probs=130.7

Q ss_pred             ECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCccc
Q 003296           14 NFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGE   93 (833)
Q Consensus        14 ~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~   93 (833)
                      .+..+.++.+..+..+++|+.|++++|.++.+.  .|..+++|++|+|++|.++++.+  +..+++|++|+|++|.+++.
T Consensus        25 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~  100 (308)
T 1h6u_A           25 AAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV  100 (308)
T ss_dssp             HTTCSSTTSEECHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC
T ss_pred             HhCCCCcCceecHHHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc
Confidence            455566666555566777888888888877643  57778888888888888876544  77778888888888887753


Q ss_pred             CCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhc
Q 003296           94 IPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRF  173 (833)
Q Consensus        94 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~  173 (833)
                        ..+..+++|+.|+|++|++++..  .|..+++|++|+|++|.+++..+  +..+++                      
T Consensus       101 --~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~----------------------  152 (308)
T 1h6u_A          101 --SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTN----------------------  152 (308)
T ss_dssp             --GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTT----------------------
T ss_pred             --hhhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCC----------------------
Confidence              35777777888888888777543  27777777777777777765432  322222                      


Q ss_pred             CCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCC
Q 003296          174 LRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNN  253 (833)
Q Consensus       174 L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N  253 (833)
                      |+.|+|++|++.+..+  +..+++|+.|++++|.+++                       +++  +..+++|++|+|++|
T Consensus       153 L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-----------------------~~~--l~~l~~L~~L~L~~N  205 (308)
T 1h6u_A          153 LQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD-----------------------ISP--LASLPNLIEVHLKNN  205 (308)
T ss_dssp             CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-----------------------CGG--GGGCTTCCEEECTTS
T ss_pred             ccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc-----------------------Chh--hcCCCCCCEEEccCC
Confidence            4455555555544322  4555666666666665542                       111  445566666666666


Q ss_pred             CCCCCCCccccCCCCCcEEEccCCccC
Q 003296          254 SFTGMIPQQLGSCRSLTLLNLAQNELN  280 (833)
Q Consensus       254 ~l~~~~~~~~~~l~~L~~L~L~~N~l~  280 (833)
                      ++++..+  +..+++|+.|+|++|+++
T Consensus       206 ~l~~~~~--l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          206 QISDVSP--LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred             ccCcccc--ccCCCCCCEEEccCCeee
Confidence            6665432  556666666666666654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.89  E-value=1.7e-22  Score=202.06  Aligned_cols=182  Identities=25%  Similarity=0.214  Sum_probs=160.1

Q ss_pred             CCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCc
Q 003296           10 LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNA   89 (833)
Q Consensus        10 L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~   89 (833)
                      -+.++++++.++.+|. ...++|++|+|++|+++++.+..|.++++|++|+|++|+|+++.+..|..+++|++|+|++|.
T Consensus         9 ~~~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TTEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            3689999999999985 346789999999999999998899999999999999999998888889999999999999999


Q ss_pred             CcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChh
Q 003296           90 FHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGG  169 (833)
Q Consensus        90 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~  169 (833)
                      +++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|.+++..+..|..+++|+.|++++|.+.+..|  
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~--  165 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP--  165 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT--
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC--
Confidence            998888889999999999999999998888889999999999999999998888788889998888888887776544  


Q ss_pred             hhhcCCEEecccccccccCCccCCCCCC
Q 003296          170 ITRFLRNLDLSYNKLLGVIPIDLLSHPN  197 (833)
Q Consensus       170 ~~~~L~~L~Ls~N~l~~~~~~~~~~~~~  197 (833)
                         .|+.|+++.|+++|.+|..+..++.
T Consensus       166 ---~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          166 ---GIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             ---TTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ---CHHHHHHHHHhCCceeeccCccccC
Confidence               3677777777777777776665543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=2.5e-23  Score=221.97  Aligned_cols=220  Identities=18%  Similarity=0.196  Sum_probs=168.5

Q ss_pred             CCCEEECCCCCCCC--c---ccccCCCCCCEEECCCCCCCCcccccc--cCCCCCCEEeCcCCcCCCCCC----cccCCC
Q 003296            9 GLKLLNFSKNELVS--L---PTFNGFAGLEVLDFSSNNLNGNINLQF--DELVSLKSLNLSKNKFNGFLP----INLGKT   77 (833)
Q Consensus         9 ~L~~L~ls~N~l~~--i---~~f~~l~~L~~L~Ls~N~l~~~~~~~f--~~l~~L~~L~Ls~N~l~~~~p----~~~~~l   77 (833)
                      .++.+.+.++.+..  +   ..+..+++|++|+|++|.+++..+..|  ..+++|++|+|++|.|++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            46778888887754  2   234456779999999999988888887  888999999999999887555    445678


Q ss_pred             CCCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCc---cC-CccccCCCCCcEEECcCCcCCCCCCc---ccccCC
Q 003296           78 KALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSG---SV-PDRIGELSKLEVLILSANNLDGRLPT---SLASIT  150 (833)
Q Consensus        78 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~---~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~  150 (833)
                      ++|++|+|++|.+++..|..|+.+++|++|+|++|++.+   .. +..++.+++|++|+|++|.++...+.   .+..++
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~  224 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV  224 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence            889999999999988888888899999999999998764   22 23347888899999999988743221   356778


Q ss_pred             ccCccccccccccccCChhh--h---hcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEc
Q 003296          151 TLSRFAANQNKFSGSVPGGI--T---RFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRL  225 (833)
Q Consensus       151 ~L~~l~l~~n~l~~~~p~~~--~---~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l  225 (833)
                      +|+.|++++|++++..|..+  .   +.|++|+|++|+++ .+|..+.  ++|++|+|++|++++.......++|+.|++
T Consensus       225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L  301 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTL  301 (310)
T ss_dssp             CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEEC
T ss_pred             CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEEC
Confidence            89999999999988766544  2   47899999999988 4566554  789999999999987422223378899999


Q ss_pred             CCcccc
Q 003296          226 GTNLLI  231 (833)
Q Consensus       226 ~~n~l~  231 (833)
                      ++|.+.
T Consensus       302 ~~N~l~  307 (310)
T 4glp_A          302 DGNPFL  307 (310)
T ss_dssp             SSTTTS
T ss_pred             cCCCCC
Confidence            999864

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=4.9e-24  Score=232.73  Aligned_cols=129  Identities=24%  Similarity=0.257  Sum_probs=83.5

Q ss_pred             EEECCCCCCCC-cccccCCC-CCCEEECCCCCCCCccc----ccccCCC-CCCEEeCcCCcCCCCCCcccCCC-----CC
Q 003296           12 LLNFSKNELVS-LPTFNGFA-GLEVLDFSSNNLNGNIN----LQFDELV-SLKSLNLSKNKFNGFLPINLGKT-----KA   79 (833)
Q Consensus        12 ~L~ls~N~l~~-i~~f~~l~-~L~~L~Ls~N~l~~~~~----~~f~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~   79 (833)
                      .+++++|.+++ +|.|...+ +|++|||++|+|+...+    ..|.+++ +|++|+|++|.|++..+..|..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35677777776 46554444 37777777777776665    6677777 77777777777776666655554     67


Q ss_pred             CCEEEccCCcCcccCCcccc----CC-CCCCEEeccCCcCCccCCcccc----C-CCCCcEEECcCCcCCC
Q 003296           80 LEELVLSGNAFHGEIPKGIA----DY-RNLTLIDLSANNLSGSVPDRIG----E-LSKLEVLILSANNLDG  140 (833)
Q Consensus        80 L~~L~L~~N~l~~~~p~~~~----~l-~~L~~L~Ls~N~l~~~~~~~~~----~-l~~L~~L~Ls~N~l~~  140 (833)
                      |++|+|++|.+++..+..+.    .+ ++|+.|+|++|+|++..+..+.    . .++|++|+|++|.++.
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  152 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI  152 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence            77777777777665555333    33 6677777777777655544432    2 2467777777766654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=8.1e-24  Score=231.01  Aligned_cols=112  Identities=21%  Similarity=0.212  Sum_probs=79.4

Q ss_pred             EEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCC----cccCCCC-CCCEEEccCCcCcccCCccccCC-----CC
Q 003296           34 VLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLP----INLGKTK-ALEELVLSGNAFHGEIPKGIADY-----RN  103 (833)
Q Consensus        34 ~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l-----~~  103 (833)
                      .++|++|++++..+..+...++|++|||++|.|++..+    ..|..++ +|++|+|++|.+++..+..|..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46778888887777766666668888888888877666    6667777 78888888888877666666654     77


Q ss_pred             CCEEeccCCcCCccCCcccc----CC-CCCcEEECcCCcCCCCCCcc
Q 003296          104 LTLIDLSANNLSGSVPDRIG----EL-SKLEVLILSANNLDGRLPTS  145 (833)
Q Consensus       104 L~~L~Ls~N~l~~~~~~~~~----~l-~~L~~L~Ls~N~l~~~~p~~  145 (833)
                      |++|+|++|.+++..+..+.    .+ ++|++|+|++|.|++..+..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~  128 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE  128 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH
Confidence            78888888877765555433    33 67777777777776554433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.87  E-value=1.9e-21  Score=210.98  Aligned_cols=239  Identities=16%  Similarity=0.123  Sum_probs=163.9

Q ss_pred             CEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccC-CccccCCCCCCE-Eecc
Q 003296           33 EVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEI-PKGIADYRNLTL-IDLS  110 (833)
Q Consensus        33 ~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~-L~Ls  110 (833)
                      ++++.++|+++.++. .+  .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+ +.+|.++++|+. +.++
T Consensus        12 ~~v~C~~~~Lt~iP~-~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTEIPS-DL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCSCCT-TC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCccCc-Cc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            578888999986644 33  367999999999999888888999999999999999986644 457889988775 6677


Q ss_pred             CCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEeccc-ccccccCC
Q 003296          111 ANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSY-NKLLGVIP  189 (833)
Q Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~-N~l~~~~~  189 (833)
                      .|+|+.+.|..|.++++|++|++++|.|+...+..+....++                      ..|++++ |++..+.+
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l----------------------~~l~l~~~~~i~~l~~  146 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK----------------------VLLDIQDNINIHTIER  146 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSC----------------------EEEEEESCTTCCEECT
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchh----------------------hhhhhccccccccccc
Confidence            899998889999999999999999999987666555544443                      3445433 34544444


Q ss_pred             ccCCCCC-CCCEEecccccCcccCCCCCC-cCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCC
Q 003296          190 IDLLSHP-NLQTIDLSVNMLEGSLPQNMS-PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCR  267 (833)
Q Consensus       190 ~~~~~~~-~L~~L~Ls~N~l~~~~p~~~~-~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~  267 (833)
                      ..|..+. .++.|+|++|.|+...+..+. .+++.|++.+|+.++.++...|..+++|++|||++|+|+.+.+..|.   
T Consensus       147 ~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---  223 (350)
T 4ay9_X          147 NSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---  223 (350)
T ss_dssp             TSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---
T ss_pred             cchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---
Confidence            5555553 577788888887754444333 45666666655445567777777788888888888887766554444   


Q ss_pred             CCcEEEccCCccCCCChhhhCCCCCCcEEEccC
Q 003296          268 SLTLLNLAQNELNGSLPIQLGSLGILQVMNLQL  300 (833)
Q Consensus       268 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  300 (833)
                      +|+.|.+.++.--..+| .+..+++|+.+++++
T Consensus       224 ~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          224 NLKKLRARSTYNLKKLP-TLEKLVALMEASLTY  255 (350)
T ss_dssp             TCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred             cchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence            34444443332222344 244555555555543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=2.9e-21  Score=199.20  Aligned_cols=179  Identities=26%  Similarity=0.331  Sum_probs=152.4

Q ss_pred             CCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCC
Q 003296          198 LQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQN  277 (833)
Q Consensus       198 L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  277 (833)
                      .+.++++++.++ .+|..+.++++.|++++|.+.+ +++..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus        16 ~~~l~~~~~~l~-~~p~~~~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   93 (251)
T 3m19_A           16 KKEVDCQGKSLD-SVPSGIPADTEKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN   93 (251)
T ss_dssp             GTEEECTTCCCS-SCCSCCCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CeEEecCCCCcc-ccCCCCCCCCCEEEccCCCcCc-cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence            445555555554 3444444555566666655543 55567889999999999999999999989999999999999999


Q ss_pred             ccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccCc
Q 003296          278 ELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPN  357 (833)
Q Consensus       278 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~  357 (833)
                      .+++..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+.
T Consensus        94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  173 (251)
T 3m19_A           94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG  173 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence            99988888899999999999999999988888889999999999999999988888899999999999999999988888


Q ss_pred             cccCCCCCCEEEccCCcCCcc
Q 003296          358 SITNMRSLIELQLGGNQLSGT  378 (833)
Q Consensus       358 ~~~~l~~L~~L~L~~N~l~~~  378 (833)
                      .|..+++|+.|+|++|++.+.
T Consensus       174 ~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          174 AFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTCTTCCEEECCSCCBCTT
T ss_pred             HHhCCCCCCEEEeeCCceeCC
Confidence            999999999999999999865

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=4e-23  Score=223.27  Aligned_cols=221  Identities=18%  Similarity=0.202  Sum_probs=134.3

Q ss_pred             CCCEEECCCCCCCCcccccccCC--CCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCccc-CCccccCCCCCCEE
Q 003296           31 GLEVLDFSSNNLNGNINLQFDEL--VSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGE-IPKGIADYRNLTLI  107 (833)
Q Consensus        31 ~L~~L~Ls~N~l~~~~~~~f~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L  107 (833)
                      .++.||+++|.+.   +..+..+  ++++.|++++|.+++..+. +..+++|++|+|++|.+++. +|..+..+++|++|
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            4777888887776   4556666  7788888888888766554 44677888888888877654 66777777888888


Q ss_pred             eccCCcCCccCCccccCCCCCcEEECcCC-cCCCC-CCcccccCCccCccccccccccccCChhhhhcCCEEecccc-cc
Q 003296          108 DLSANNLSGSVPDRIGELSKLEVLILSAN-NLDGR-LPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYN-KL  184 (833)
Q Consensus       108 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N-~l  184 (833)
                      +|++|.+++..+..|+.+++|++|+|++| .+++. ++..+..+++                      |++|+|++| .+
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~----------------------L~~L~l~~~~~l  181 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR----------------------LDELNLSWCFDF  181 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT----------------------CCEEECCCCTTC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC----------------------CCEEcCCCCCCc
Confidence            88888777667777777788888888777 45531 3333333333                      444444444 44


Q ss_pred             ccc-CCccCCCCC-CCCEEeccccc--CcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCC-CCCCC
Q 003296          185 LGV-IPIDLLSHP-NLQTIDLSVNM--LEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNS-FTGMI  259 (833)
Q Consensus       185 ~~~-~~~~~~~~~-~L~~L~Ls~N~--l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~-l~~~~  259 (833)
                      ++. ++..+..++ +|++|+|++|.  ++.                     +.+ +..+..+++|++|++++|. +++..
T Consensus       182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~---------------------~~l-~~~~~~~~~L~~L~l~~~~~l~~~~  239 (336)
T 2ast_B          182 TEKHVQVAVAHVSETITQLNLSGYRKNLQK---------------------SDL-STLVRRCPNLVHLDLSDSVMLKNDC  239 (336)
T ss_dssp             CHHHHHHHHHHSCTTCCEEECCSCGGGSCH---------------------HHH-HHHHHHCTTCSEEECTTCTTCCGGG
T ss_pred             ChHHHHHHHHhcccCCCEEEeCCCcccCCH---------------------HHH-HHHHhhCCCCCEEeCCCCCcCCHHH
Confidence            332 233344455 66666666663  220                     001 1233456666777776666 55555


Q ss_pred             CccccCCCCCcEEEccCCccCCCChh---hhCCCCCCcEEEccCC
Q 003296          260 PQQLGSCRSLTLLNLAQNELNGSLPI---QLGSLGILQVMNLQLN  301 (833)
Q Consensus       260 ~~~~~~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L~~L~L~~N  301 (833)
                      +..+..+++|+.|++++|.  +..+.   .+..+++|+.|++++|
T Consensus       240 ~~~l~~l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          240 FQEFFQLNYLQHLSLSRCY--DIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGGGGCTTCCEEECTTCT--TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             HHHHhCCCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCEEeccCc
Confidence            5566666666666666664  12222   3444555555555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=9.1e-24  Score=232.96  Aligned_cols=258  Identities=26%  Similarity=0.301  Sum_probs=129.5

Q ss_pred             ccccCCCCCCEEeCcCCcCCCCCC----cccCCCCCCCEEEccCCc---CcccCCccc-------cCCCCCCEEeccCCc
Q 003296           48 LQFDELVSLKSLNLSKNKFNGFLP----INLGKTKALEELVLSGNA---FHGEIPKGI-------ADYRNLTLIDLSANN  113 (833)
Q Consensus        48 ~~f~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~N~---l~~~~p~~~-------~~l~~L~~L~Ls~N~  113 (833)
                      ..+..+++|++|+|++|.|+...+    ..|..+++|++|+|++|.   +++.+|..+       ..+++|++|+|++|.
T Consensus        26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~  105 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  105 (386)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence            345566667777777776665422    235566666666666643   333344333       455555555555555


Q ss_pred             CCc----cCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCC
Q 003296          114 LSG----SVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIP  189 (833)
Q Consensus       114 l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~  189 (833)
                      ++.    .+|..+..+++|++|+|++|.++...+..+.                        ..|..  +..|++.+.  
T Consensus       106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~------------------------~~l~~--l~~~~~~~~--  157 (386)
T 2ca6_A          106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA------------------------RALQE--LAVNKKAKN--  157 (386)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH------------------------HHHHH--HHHHHHHHT--
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHH------------------------HHHHH--Hhhhhhccc--
Confidence            554    2444455555555555555554322211111                        11100  011111111  


Q ss_pred             ccCCCCCCCCEEecccccCcc-cCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCC-----CCCccc
Q 003296          190 IDLLSHPNLQTIDLSVNMLEG-SLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTG-----MIPQQL  263 (833)
Q Consensus       190 ~~~~~~~~L~~L~Ls~N~l~~-~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~-----~~~~~~  263 (833)
                           .++|++|+|++|.++. .+|.                   + ...+..+++|++|+|++|+++.     ..+..+
T Consensus       158 -----~~~L~~L~L~~n~l~~~~~~~-------------------l-~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l  212 (386)
T 2ca6_A          158 -----APPLRSIICGRNRLENGSMKE-------------------W-AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL  212 (386)
T ss_dssp             -----CCCCCEEECCSSCCTGGGHHH-------------------H-HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG
T ss_pred             -----CCCCcEEECCCCCCCcHHHHH-------------------H-HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHh
Confidence                 1566666666666541 1110                   0 0234456667777777776652     233355


Q ss_pred             cCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCccc----Cccccc--c
Q 003296          264 GSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGS----IPSFLS--N  337 (833)
Q Consensus       264 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~--~  337 (833)
                      ..+++|+.|+|++|.++..-                    .+.+|..+..+++|++|+|++|.+++.    ++..+.  .
T Consensus       213 ~~~~~L~~L~Ls~n~l~~~g--------------------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~  272 (386)
T 2ca6_A          213 AYCQELKVLDLQDNTFTHLG--------------------SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE  272 (386)
T ss_dssp             GGCTTCCEEECCSSCCHHHH--------------------HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred             hcCCCccEEECcCCCCCcHH--------------------HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence            56666666666666653000                    023344444455555555555555433    333442  2


Q ss_pred             CCCCCEEEccCCcccc----ccCccc-cCCCCCCEEEccCCcCCcc
Q 003296          338 LTNLVNLNLRQNNLNG----SIPNSI-TNMRSLIELQLGGNQLSGT  378 (833)
Q Consensus       338 l~~L~~L~L~~N~l~~----~~p~~~-~~l~~L~~L~L~~N~l~~~  378 (833)
                      +++|+.|+|++|.+++    .+|..+ .++++|+.|++++|++++.
T Consensus       273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            5666666666666665    355555 4567777777777776644

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=1.7e-23  Score=230.80  Aligned_cols=136  Identities=18%  Similarity=0.224  Sum_probs=100.2

Q ss_pred             CCCcEEEccCCccC-CCCh---hhhCCCCCCcEEEccCCcCCC-----cCchhhcCCCcCceeeccCCcCc----ccCcc
Q 003296          267 RSLTLLNLAQNELN-GSLP---IQLGSLGILQVMNLQLNKLSG-----EIPSQFSQLKLLSTMNISWNSLS----GSIPS  333 (833)
Q Consensus       267 ~~L~~L~L~~N~l~-~~~p---~~~~~l~~L~~L~L~~N~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~----~~~~~  333 (833)
                      ++|++|+|++|++. +.++   ..+..+++|+.|++++|.++.     ..|..+..+++|++|+|++|.++    ..+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            55555556555554 2233   244556666666777666652     34447788899999999999996    56788


Q ss_pred             ccccCCCCCEEEccCCccccc----cCcccc--CCCCCCEEEccCCcCCc----cCCCCc-c--cccceeeccccccccc
Q 003296          334 FLSNLTNLVNLNLRQNNLNGS----IPNSIT--NMRSLIELQLGGNQLSG----TIPMMP-P--RLQIALNLSSNLFEGP  400 (833)
Q Consensus       334 ~~~~l~~L~~L~L~~N~l~~~----~p~~~~--~l~~L~~L~L~~N~l~~----~~p~~~-~--~~~~~L~Ls~N~l~~~  400 (833)
                      .+..+++|+.|+|++|.+++.    ++..+.  .+++|+.|+|++|.+++    .+|... .  .....|++++|.+++.
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            899999999999999999876    566664  49999999999999987    355433 2  2336899999999987


Q ss_pred             hh
Q 003296          401 IP  402 (833)
Q Consensus       401 ~p  402 (833)
                      .|
T Consensus       319 ~~  320 (386)
T 2ca6_A          319 DD  320 (386)
T ss_dssp             SH
T ss_pred             hh
Confidence            75

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=8.4e-23  Score=220.76  Aligned_cols=258  Identities=17%  Similarity=0.198  Sum_probs=176.0

Q ss_pred             CCCCEEECCCCCCCCcccccCC--CCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCC-CCcccCCCCCCCEEE
Q 003296            8 DGLKLLNFSKNELVSLPTFNGF--AGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGF-LPINLGKTKALEELV   84 (833)
Q Consensus         8 ~~L~~L~ls~N~l~~i~~f~~l--~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~   84 (833)
                      ..++.+++++|.+.. ..+..+  ++++.|++++|.+.+..+. +..+++|++|+|++|.+++. .|..+..+++|++|+
T Consensus        47 ~~~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           47 SLWQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             TTSSEEECTTCBCCH-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             hhheeeccccccCCH-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            348899999998873 234455  7899999999999988776 45799999999999999865 777899999999999


Q ss_pred             ccCCcCcccCCccccCCCCCCEEeccCC-cCCc-cCCccccCCCCCcEEECcCC-cCCCC-CCcccccCC-ccCcccccc
Q 003296           85 LSGNAFHGEIPKGIADYRNLTLIDLSAN-NLSG-SVPDRIGELSKLEVLILSAN-NLDGR-LPTSLASIT-TLSRFAANQ  159 (833)
Q Consensus        85 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~-~~~~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~-~L~~l~l~~  159 (833)
                      |++|.+++..+..++.+++|++|+|++| .+++ .++..+.++++|++|+|++| .+++. ++..+..++ +|+.|++++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence            9999999888999999999999999999 6875 36777899999999999999 88754 455566666 555555555


Q ss_pred             ccccccCChhhhhcCCEEeccccccc-ccCCccCCCCCCCCEEeccccc-CcccCCCCCCcCCcEEEcCCccccCCCCcc
Q 003296          160 NKFSGSVPGGITRFLRNLDLSYNKLL-GVIPIDLLSHPNLQTIDLSVNM-LEGSLPQNMSPNLVRLRLGTNLLIGEIPSA  237 (833)
Q Consensus       160 n~l~~~~p~~~~~~L~~L~Ls~N~l~-~~~~~~~~~~~~L~~L~Ls~N~-l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~  237 (833)
                      |.+                    .++ +.+|..+..+++|++|++++|. +++..+                       .
T Consensus       205 ~~~--------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-----------------------~  241 (336)
T 2ast_B          205 YRK--------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-----------------------Q  241 (336)
T ss_dssp             CGG--------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG-----------------------G
T ss_pred             Ccc--------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH-----------------------H
Confidence            421                    222 2233344456667777776666 332211                       1


Q ss_pred             ccCCCCCCCEEECCCCC-CCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcC
Q 003296          238 TFTSLEKLTYLELDNNS-FTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQ  313 (833)
Q Consensus       238 ~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  313 (833)
                      .+..+++|++|++++|. +.......+..+++|+.|++++| +....-..+.  ..+..|+++.|.+++..|..+..
T Consensus       242 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          242 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred             HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence            33445666666666663 22111124556666666666666 3321111111  12444456667776666665543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.85  E-value=7.2e-21  Score=191.72  Aligned_cols=157  Identities=19%  Similarity=0.219  Sum_probs=144.7

Q ss_pred             CCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCccc-ccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCC
Q 003296           10 LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNIN-LQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGN   88 (833)
Q Consensus        10 L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~-~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N   88 (833)
                      -+.+++++|.++.+|. .-...+++|+|++|+|+++.+ ..|..+++|++|+|++|+|+++.+..|.++++|++|+|++|
T Consensus        13 ~~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TTEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            3689999999999985 234568999999999998855 56999999999999999999999999999999999999999


Q ss_pred             cCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCC
Q 003296           89 AFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVP  167 (833)
Q Consensus        89 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p  167 (833)
                      .|++..+..|.++++|++|+|++|+|+++.|..|.++++|++|+|++|+|++..|..|..+++|+.|++++|.+++..+
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998876544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.85  E-value=1.1e-20  Score=190.36  Aligned_cols=153  Identities=21%  Similarity=0.275  Sum_probs=143.1

Q ss_pred             CEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcC
Q 003296           11 KLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAF   90 (833)
Q Consensus        11 ~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l   90 (833)
                      +.+++++|.++.+|. .-.++|+.|+|++|+|+++.+..|.++++|++|+|++|+|+++.|..|.++++|++|+|++|.|
T Consensus        14 ~~v~c~~~~l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             TEEECTTSCCSSCCS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCcCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            689999999999986 2237899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccc
Q 003296           91 HGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSG  164 (833)
Q Consensus        91 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~  164 (833)
                      +.+.+..|.++++|+.|+|++|+|+++.|..|..+++|++|+|++|.|++..+..|..+++|+.|++++|.+..
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            98888889999999999999999999999999999999999999999999988889999998888888888764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.84  E-value=8.1e-21  Score=206.93  Aligned_cols=177  Identities=28%  Similarity=0.238  Sum_probs=144.2

Q ss_pred             CCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCccccccc-CCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCC
Q 003296           10 LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFD-ELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGN   88 (833)
Q Consensus        10 L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N   88 (833)
                      -+.+++++|.|+.+|. .-...++.|+|++|+|+++.+..|. ++++|++|+|++|+|+++.+..|..+++|++|+|++|
T Consensus        20 ~~~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TTEEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            3689999999999986 3345799999999999999999998 9999999999999999999999999999999999999


Q ss_pred             cCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCccc---ccCCccCcccccccccccc
Q 003296           89 AFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSL---ASITTLSRFAANQNKFSGS  165 (833)
Q Consensus        89 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~l~l~~n~l~~~  165 (833)
                      +|+++.+..|.++++|+.|+|++|+|+++.|..|.++++|++|+|++|.|++..+..|   ..+++              
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~--------------  164 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK--------------  164 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTT--------------
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCc--------------
Confidence            9999888899999999999999999999999999999999999999999997655555   33444              


Q ss_pred             CChhhhhcCCEEecccccccccCCccCCCCCC--CCEEecccccCc
Q 003296          166 VPGGITRFLRNLDLSYNKLLGVIPIDLLSHPN--LQTIDLSVNMLE  209 (833)
Q Consensus       166 ~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~--L~~L~Ls~N~l~  209 (833)
                              |+.|+|++|++.++.+..+..++.  ++.|+|++|.+.
T Consensus       165 --------L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          165 --------LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             --------CCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             --------CCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence                    445555555555443334444443  355666666554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=3.9e-20  Score=184.93  Aligned_cols=158  Identities=26%  Similarity=0.292  Sum_probs=145.8

Q ss_pred             CCCCCEEECCCCCCCCccc--ccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEE
Q 003296            7 IDGLKLLNFSKNELVSLPT--FNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELV   84 (833)
Q Consensus         7 l~~L~~L~ls~N~l~~i~~--f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~   84 (833)
                      .++|+.|++++|.++.++.  |..+++|++|+|++|+|+++.+..|.++++|++|+|++|+|+++.+..|..+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            4679999999999999863  88999999999999999999888999999999999999999998888899999999999


Q ss_pred             ccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccc
Q 003296           85 LSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSG  164 (833)
Q Consensus        85 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~  164 (833)
                      |++|.|++..+..|..+++|+.|+|++|+++++.+..|..+++|++|+|++|.+.+.       ++.|+.|++..|+++|
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSG  179 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTT
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCc
Confidence            999999988888899999999999999999988888899999999999999988753       4578999999999999


Q ss_pred             cCChhhh
Q 003296          165 SVPGGIT  171 (833)
Q Consensus       165 ~~p~~~~  171 (833)
                      .+|..+.
T Consensus       180 ~ip~~~~  186 (208)
T 2o6s_A          180 VVRNSAG  186 (208)
T ss_dssp             TBBCTTS
T ss_pred             eeeccCc
Confidence            9997653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=4.2e-20  Score=210.81  Aligned_cols=183  Identities=26%  Similarity=0.313  Sum_probs=142.5

Q ss_pred             CCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccC
Q 003296            8 DGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSG   87 (833)
Q Consensus         8 ~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~   87 (833)
                      .+|+.|+|++|.|+++|.- -+++|++|+|++|+|+.+.    ..+++|++|+|++|+|++ +|. |..  +|++|+|++
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~-l~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDN-LPPQITVLEITQNALISLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSC-CCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred             CCccEEEeCCCCCCccCHh-HcCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence            3789999999999998751 2478999999999998554    457899999999999997 455 655  899999999


Q ss_pred             CcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCC
Q 003296           88 NAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVP  167 (833)
Q Consensus        88 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p  167 (833)
                      |.|++ +|.   .+++|+.|+|++|.|++ +|.   .+++|++|+|++|.|++ +|. |.  ++|+.|++++|+|+ .+|
T Consensus       130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp  196 (571)
T 3cvr_A          130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP  196 (571)
T ss_dssp             SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred             CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence            99987 455   68899999999999987 454   57899999999999987 555 65  78888888888887 555


Q ss_pred             hhhhhcC-------CEEecccccccccCCccCCCCCCCCEEecccccCcccCCC
Q 003296          168 GGITRFL-------RNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQ  214 (833)
Q Consensus       168 ~~~~~~L-------~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~  214 (833)
                      . +...|       +.|+|++|+++. +|..+..+++|+.|+|++|.+++.+|.
T Consensus       197 ~-~~~~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          197 A-VPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             C-CC--------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             h-HHHhhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence            5 54466       888888888874 566666788888888888887765543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.83  E-value=9.2e-20  Score=184.91  Aligned_cols=155  Identities=19%  Similarity=0.197  Sum_probs=143.1

Q ss_pred             CCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCc
Q 003296           10 LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNA   89 (833)
Q Consensus        10 L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~   89 (833)
                      -+.++++++.++.+|. .-.++|++|+|++|+|+++.+..|.++++|++|+|++|+|+.+.+..|..+++|++|+|++|+
T Consensus        21 ~~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             TTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence            5689999999999986 334899999999999999999999999999999999999998888889999999999999999


Q ss_pred             CcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccC
Q 003296           90 FHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSV  166 (833)
Q Consensus        90 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~  166 (833)
                      |+++.+..|..+++|+.|+|++|+|+ .+|..+..+++|++|+|++|+|++..+..|..+++|+.|++.+|.+....
T Consensus       100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            99888888999999999999999999 67888999999999999999999888888999999999998888887644

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.82  E-value=6.2e-20  Score=193.39  Aligned_cols=184  Identities=24%  Similarity=0.297  Sum_probs=100.5

Q ss_pred             CCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccC
Q 003296           15 FSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEI   94 (833)
Q Consensus        15 ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~   94 (833)
                      +..+.+..+..+..+++|+.|++++|.++.+.  .|..+++|++|+|++|+|+++.+  +..+++|++|+|++|.+++. 
T Consensus        31 l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-  105 (291)
T 1h6t_A           31 LKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-  105 (291)
T ss_dssp             TTCSCTTSEECHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-
T ss_pred             hcCCCcccccchhhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-
Confidence            44444444433444455555555555554432  24445555555555555554333  45555555555555555432 


Q ss_pred             CccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcC
Q 003296           95 PKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFL  174 (833)
Q Consensus        95 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L  174 (833)
                       ..+..+++|++|+|++|++++.  ..+..+++|++|+|++|.+++.  ..+..+++|+.|++++|++++..|-...+.|
T Consensus       106 -~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L  180 (291)
T 1h6t_A          106 -SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKL  180 (291)
T ss_dssp             -GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTC
T ss_pred             -hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchhhcCCCcc
Confidence             2255555555555555555432  2345555555555555555543  3445555555555555555543332224457


Q ss_pred             CEEecccccccccCCccCCCCCCCCEEecccccCcc
Q 003296          175 RNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEG  210 (833)
Q Consensus       175 ~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~  210 (833)
                      +.|+|++|++++. + .+..+++|+.|++++|.++.
T Consensus       181 ~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          181 QNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            7888888887764 3 37888999999999998875

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=8e-20  Score=208.51  Aligned_cols=195  Identities=25%  Similarity=0.343  Sum_probs=116.5

Q ss_pred             CCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecc
Q 003296           31 GLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLS  110 (833)
Q Consensus        31 ~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  110 (833)
                      +|+.|+|++|+|+++.+ .+  .++|++|+|++|+|+. +|   ..+++|++|+|++|.|++ +|. |.+  +|+.|+|+
T Consensus        60 ~L~~L~Ls~n~L~~lp~-~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPD-NL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSCCCS-CC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCccCH-hH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            45555555555554322 22  1445555555555552 23   234455555555555554 333 333  45555555


Q ss_pred             CCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCc
Q 003296          111 ANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPI  190 (833)
Q Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~  190 (833)
                      +|+|++ +|.   .+++|++|+|++|.|++                         +|. ..+.|+.|+|++|++++ +|.
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-------------------------lp~-~l~~L~~L~Ls~N~L~~-lp~  177 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-------------------------LPE-LPTSLEVLSVRNNQLTF-LPE  177 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-------------------------CCC-CCTTCCEEECCSSCCSC-CCC
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-------------------------CCC-cCCCcCEEECCCCCCCC-cch
Confidence            555554 222   34555555555555543                         333 33458889999998887 555


Q ss_pred             cCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCc
Q 003296          191 DLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLT  270 (833)
Q Consensus       191 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  270 (833)
                       |.  ++|+.|+|++|.|+ .+|. +..+|                  +.....|+.|+|++|+|+. +|..+..+++|+
T Consensus       178 -l~--~~L~~L~Ls~N~L~-~lp~-~~~~L------------------~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~  233 (571)
T 3cvr_A          178 -LP--ESLEALDVSTNLLE-SLPA-VPVRN------------------HHSEETEIFFRCRENRITH-IPENILSLDPTC  233 (571)
T ss_dssp             -CC--TTCCEEECCSSCCS-SCCC-CC--------------------------CCEEEECCSSCCCC-CCGGGGGSCTTE
T ss_pred             -hh--CCCCEEECcCCCCC-chhh-HHHhh------------------hcccccceEEecCCCccee-cCHHHhcCCCCC
Confidence             54  89999999999988 4443 22110                  1223446999999999985 577777799999


Q ss_pred             EEEccCCccCCCChhhhCCCC
Q 003296          271 LLNLAQNELNGSLPIQLGSLG  291 (833)
Q Consensus       271 ~L~L~~N~l~~~~p~~~~~l~  291 (833)
                      .|+|++|++++.+|..+..+.
T Consensus       234 ~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          234 TIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             EEECCSSSCCHHHHHHHHHHH
T ss_pred             EEEeeCCcCCCcCHHHHHHhh
Confidence            999999999998888876643

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=8.7e-20  Score=192.28  Aligned_cols=171  Identities=22%  Similarity=0.284  Sum_probs=127.9

Q ss_pred             CCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296            6 GIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL   85 (833)
Q Consensus         6 ~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   85 (833)
                      .+++|+.|++++|.+..++.+..+++|++|+|++|+++++.+  |..+++|++|+|++|+++++  ..+..+++|++|+|
T Consensus        44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L  119 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSL  119 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEEC
T ss_pred             hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEEC
Confidence            456778888888888877777778888888888888877655  77888888888888888753  23777888888888


Q ss_pred             cCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCcccccccccccc
Q 003296           86 SGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGS  165 (833)
Q Consensus        86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~  165 (833)
                      ++|.+++.  ..+..+++|+.|+|++|++++.  ..++.+++|++|+|++|.+++..|  +..+++|+.|++++|.+++.
T Consensus       120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l  193 (291)
T 1h6t_A          120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL  193 (291)
T ss_dssp             TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred             CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC
Confidence            88888754  4677788888888888888765  567788888888888888876655  77788888888888887753


Q ss_pred             CChhhhhcCCEEecccccccc
Q 003296          166 VPGGITRFLRNLDLSYNKLLG  186 (833)
Q Consensus       166 ~p~~~~~~L~~L~Ls~N~l~~  186 (833)
                      -.-.-++.|+.|++++|++..
T Consensus       194 ~~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          194 RALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             GGGTTCTTCSEEEEEEEEEEC
T ss_pred             hhhccCCCCCEEECcCCcccC
Confidence            221224567888888887764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=4.6e-19  Score=178.48  Aligned_cols=153  Identities=20%  Similarity=0.240  Sum_probs=132.0

Q ss_pred             CCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccC
Q 003296           32 LEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSA  111 (833)
Q Consensus        32 L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  111 (833)
                      -+.+++++|.++.+... +.  ++|+.|+|++|+|+++.+..|..+++|++|+|++|+|+++.|..|.++++|++|+|++
T Consensus        13 ~~~v~c~~~~l~~iP~~-l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           13 NNIVDCRGKGLTEIPTN-LP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TTEEECTTSCCSSCCSS-CC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CCEEEcCCCCcCcCCCc-cC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            36899999999876543 32  6899999999999998888999999999999999999999999999999999999999


Q ss_pred             CcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCcc
Q 003296          112 NNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPID  191 (833)
Q Consensus       112 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~  191 (833)
                      |+|+.+.+..|.++++|++|+|++|.|++..|..|..+++                      |+.|+|++|++++..+..
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~----------------------L~~L~L~~N~l~~~~~~~  147 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN----------------------LNLLSLYDNKLQTIAKGT  147 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT----------------------CCEEECCSSCCSCCCTTT
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCC----------------------CCEEECCCCcCCEECHHH
Confidence            9999888888999999999999999999988888877665                      556666667776666667


Q ss_pred             CCCCCCCCEEecccccCc
Q 003296          192 LLSHPNLQTIDLSVNMLE  209 (833)
Q Consensus       192 ~~~~~~L~~L~Ls~N~l~  209 (833)
                      |..+++|++|+|++|.+.
T Consensus       148 ~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          148 FSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TTTCTTCCEEECCSSCEE
T ss_pred             HhCCCCCCEEEeCCCCcC
Confidence            778888888888888875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.80  E-value=2.7e-19  Score=206.60  Aligned_cols=170  Identities=24%  Similarity=0.327  Sum_probs=94.4

Q ss_pred             CCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEcc
Q 003296            7 IDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLS   86 (833)
Q Consensus         7 l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~   86 (833)
                      +++|+.|++++|.+..++.|..+++|+.|+|++|+|+++.+  |..+++|+.|+|++|.|+++ | .+..+++|++|+|+
T Consensus        42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLKSLSLE  117 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCCEEECT
T ss_pred             CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCCCEEEec
Confidence            45555566666666555555556666666666666655444  55566666666666665542 2 45555666666666


Q ss_pred             CCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccC
Q 003296           87 GNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSV  166 (833)
Q Consensus        87 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~  166 (833)
                      +|.|+++  ..+..+++|+.|+|++|.|+++  ..|+.+++|+.|+|++|.|++..|  +..+++               
T Consensus       118 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~---------------  176 (605)
T 1m9s_A          118 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTK---------------  176 (605)
T ss_dssp             TSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTT---------------
T ss_pred             CCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCC---------------
Confidence            6655542  3355555666666666655543  345555666666666665555444  444444               


Q ss_pred             ChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcc
Q 003296          167 PGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEG  210 (833)
Q Consensus       167 p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~  210 (833)
                             |+.|+|++|++.+.  ..+..+++|+.|+|++|.+.+
T Consensus       177 -------L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          177 -------LQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             -------CCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             -------CCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence                   55555555555443  234555556666666665543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.80  E-value=1.8e-19  Score=208.06  Aligned_cols=189  Identities=24%  Similarity=0.275  Sum_probs=147.5

Q ss_pred             CCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCc
Q 003296           10 LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNA   89 (833)
Q Consensus        10 L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~   89 (833)
                      +..++++.+.+..+..+..+++|+.|+|++|.|..+.  .|..+++|+.|+|++|+|+++.|  +..+++|+.|+|++|.
T Consensus        23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~   98 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK   98 (605)
T ss_dssp             HHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred             HHHHhccCCCcccccchhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC
Confidence            4455677888888766778888999999999988654  58889999999999999987655  8888999999999999


Q ss_pred             CcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChh
Q 003296           90 FHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGG  169 (833)
Q Consensus        90 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~  169 (833)
                      |+++  ..+..+++|+.|+|++|.|+++  ..|..+++|+.|+|++|.|++.  ..+..++                   
T Consensus        99 l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~-------------------  153 (605)
T 1m9s_A           99 IKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLT-------------------  153 (605)
T ss_dssp             CCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCT-------------------
T ss_pred             CCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccC-------------------
Confidence            8853  3688889999999999998864  4588889999999999988764  3344333                   


Q ss_pred             hhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccC
Q 003296          170 ITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIG  232 (833)
Q Consensus       170 ~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~  232 (833)
                         .|+.|+|++|++.+..|  +..+++|+.|+|++|.+++...-.-.++|+.|++++|.+.+
T Consensus       154 ---~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          154 ---KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             ---TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEEC
T ss_pred             ---CCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcC
Confidence               37778888888887766  88899999999999999864221222677777777777654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=2.5e-19  Score=195.11  Aligned_cols=156  Identities=27%  Similarity=0.254  Sum_probs=139.6

Q ss_pred             CCCCEEECCCCCCCCcc--ccc-CCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEE
Q 003296            8 DGLKLLNFSKNELVSLP--TFN-GFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELV   84 (833)
Q Consensus         8 ~~L~~L~ls~N~l~~i~--~f~-~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~   84 (833)
                      ..++.|+|++|+|+.++  .|. .+++|+.|+|++|+|+++.+.+|.++++|++|+|++|+|+.+.+..|..+++|++|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            45899999999999985  366 899999999999999999999999999999999999999999899999999999999


Q ss_pred             ccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccc---cCCCCCcEEECcCCcCCCCCCcccccCCcc--Ccccccc
Q 003296           85 LSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRI---GELSKLEVLILSANNLDGRLPTSLASITTL--SRFAANQ  159 (833)
Q Consensus        85 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L--~~l~l~~  159 (833)
                      |++|+|+++.|..|.++++|+.|+|++|+|+++.+..|   ..+++|+.|+|++|+|++..+..|..++.+  +.|++.+
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence            99999999999999999999999999999998777667   679999999999999998777778777763  6677777


Q ss_pred             cccc
Q 003296          160 NKFS  163 (833)
Q Consensus       160 n~l~  163 (833)
                      |.+.
T Consensus       199 N~~~  202 (361)
T 2xot_A          199 NPLE  202 (361)
T ss_dssp             SCEE
T ss_pred             CCcc
Confidence            7665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=8e-19  Score=176.71  Aligned_cols=134  Identities=20%  Similarity=0.224  Sum_probs=85.7

Q ss_pred             CCEEECCCCCCCCCCC-ccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeecc
Q 003296          245 LTYLELDNNSFTGMIP-QQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNIS  323 (833)
Q Consensus       245 L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  323 (833)
                      +++|+|++|++++..+ ..|..+++|+.|+|++|.|++..+..|..+++|+.|+|++|.+++..+..|..+++|++|+|+
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  113 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR  113 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence            3455555555554432 335555555555555555555555555555666666666666665566666666777777777


Q ss_pred             CCcCcccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCcc
Q 003296          324 WNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGT  378 (833)
Q Consensus       324 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  378 (833)
                      +|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++.+.
T Consensus       114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            7777766666777777777777777777776677777777777777777777654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.79  E-value=6.6e-20  Score=190.05  Aligned_cols=170  Identities=24%  Similarity=0.295  Sum_probs=134.2

Q ss_pred             CCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEcc
Q 003296            7 IDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLS   86 (833)
Q Consensus         7 l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~   86 (833)
                      +.++..+++++|.++.++.+..+++|++|++++|+|+.+.  .|..+++|++|+|++|+|+++.+  |..+++|++|+|+
T Consensus        18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            3456667888999998888888999999999999998654  68889999999999999987655  8899999999999


Q ss_pred             CCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccC
Q 003296           87 GNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSV  166 (833)
Q Consensus        87 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~  166 (833)
                      +|++++..+  +.. ++|+.|+|++|+|++.  ..++.+++|++|+|++|+|++. + .+..+++               
T Consensus        94 ~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~---------------  151 (263)
T 1xeu_A           94 RNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSK---------------  151 (263)
T ss_dssp             SSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTT---------------
T ss_pred             CCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCC---------------
Confidence            999986433  233 8899999999999864  3588899999999999998864 2 3444444               


Q ss_pred             ChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCccc
Q 003296          167 PGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGS  211 (833)
Q Consensus       167 p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~  211 (833)
                             |+.|+|++|++.+.  ..+..+++|+.|++++|.+++.
T Consensus       152 -------L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          152 -------LEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             -------CCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             -------CCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence                   66666777776665  4577788888899988888744

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.78  E-value=4.4e-19  Score=175.46  Aligned_cols=151  Identities=16%  Similarity=0.198  Sum_probs=99.3

Q ss_pred             CCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296            6 GIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL   85 (833)
Q Consensus         6 ~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   85 (833)
                      .+++|+.|++++|.++.+|.+..+++|++|++++|.++.+  ..|..+++|++|+|++|++++..|..|..+++|++|+|
T Consensus        42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            3456777777777777766666777777777777766533  35667777777777777777666666777777777777


Q ss_pred             cCCcCcccCCccccCCCCCCEEeccCCc-CCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccc
Q 003296           86 SGNAFHGEIPKGIADYRNLTLIDLSANN-LSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKF  162 (833)
Q Consensus        86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l  162 (833)
                      ++|.+++..|..+..+++|++|+|++|. ++. +| .+..+++|++|++++|.+++..  .+..+++|+.|++++|++
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence            7777776666677777777777777776 543 33 5667777777777777776532  455555555555544444

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.78  E-value=1.6e-19  Score=186.66  Aligned_cols=143  Identities=17%  Similarity=0.121  Sum_probs=106.1

Q ss_pred             cCCccccccCcccEEEEEEc-CCCce--EEEEEccccchhhhc--------------------cChhHHHHHHHHHhcCC
Q 003296          557 ANPLNVELKTRFSTYYKAVM-PSGMS--YFIKKLNWSDKIFQL--------------------GSHHKFDKELEVLGKLS  613 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~-~~~~~--vavK~~~~~~~~~~~--------------------~~~~~~~~E~~~l~~l~  613 (833)
                      |+..+.||+|+||.||+|.. .+|+.  ||||+++........                    .....+.+|+++|++++
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  128 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK  128 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence            34568899999999999998 78999  999987422111000                    01136889999999999


Q ss_pred             CCCcccceEEEecCCceEEEEeeCCC-C----ChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCc
Q 003296          614 NSNVMTPLAYVLASDSAYLFYEYAPK-G----TLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLST  688 (833)
Q Consensus       614 H~niv~~~~~~~~~~~~~lv~ey~~~-g----~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~  688 (833)
                      |+++....-+..  +..+|||||+.+ |    +|.++...     .++..+..++.|++.||.|||.  ..+|+||||||
T Consensus       129 ~~~i~~p~~~~~--~~~~lVmE~~g~~g~~~~~L~~~~~~-----~~~~~~~~i~~qi~~~l~~lH~--~~givHrDlkp  199 (258)
T 1zth_A          129 EAGVSVPQPYTY--MKNVLLMEFIGEDELPAPTLVELGRE-----LKELDVEGIFNDVVENVKRLYQ--EAELVHADLSE  199 (258)
T ss_dssp             HTTCCCCCEEEE--ETTEEEEECCEETTEECCBHHHHGGG-----GGGSCHHHHHHHHHHHHHHHHH--TSCEECSSCST
T ss_pred             hCCCCCCeEEEc--CCCEEEEEecCCCCCccccHHHHhhc-----cChHHHHHHHHHHHHHHHHHHH--HCCEEeCCCCH
Confidence            887532222222  467999999942 4    66665432     2345667899999999999994  35799999999


Q ss_pred             cceeeCCCCCceeccceeeeee
Q 003296          689 RNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       689 ~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      +|||++.  .++|+|||+|...
T Consensus       200 ~NILl~~--~~~liDFG~a~~~  219 (258)
T 1zth_A          200 YNIMYID--KVYFIDMGQAVTL  219 (258)
T ss_dssp             TSEEESS--SEEECCCTTCEET
T ss_pred             HHEEEcC--cEEEEECcccccC
Confidence            9999998  9999999999764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=3.6e-18  Score=173.13  Aligned_cols=156  Identities=21%  Similarity=0.188  Sum_probs=131.7

Q ss_pred             CCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecc
Q 003296           31 GLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLS  110 (833)
Q Consensus        31 ~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  110 (833)
                      .-+.++.++++++.+....   .++|++|+|++|+|+++.|..|..+++|++|+|++|+|+.+.+..|..+++|++|+|+
T Consensus        20 s~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             eCCEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            4678999999998766533   3899999999999999989999999999999999999998877889999999999999


Q ss_pred             CCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCc
Q 003296          111 ANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPI  190 (833)
Q Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~  190 (833)
                      +|+|+++.+..|..+++|++|+|++|.|+ .+|..+..+++                      |+.|+|++|++.+..+.
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~----------------------L~~L~L~~N~l~~~~~~  153 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTH----------------------LTHLALDQNQLKSIPHG  153 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTT----------------------CSEEECCSSCCCCCCTT
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCC----------------------CCEEECCCCcCCccCHH
Confidence            99999888888999999999999999998 56666655554                      66677777777766666


Q ss_pred             cCCCCCCCCEEecccccCcccC
Q 003296          191 DLLSHPNLQTIDLSVNMLEGSL  212 (833)
Q Consensus       191 ~~~~~~~L~~L~Ls~N~l~~~~  212 (833)
                      .|..+++|+.|+|++|.+....
T Consensus       154 ~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          154 AFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             TTTTCTTCCEEECTTSCBCTTB
T ss_pred             HHhCCCCCCEEEeeCCCccCCc
Confidence            7778888999999988876543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.77  E-value=6.4e-19  Score=182.62  Aligned_cols=151  Identities=23%  Similarity=0.365  Sum_probs=133.5

Q ss_pred             CCCCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEE
Q 003296            4 CGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEEL   83 (833)
Q Consensus         4 ~~~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L   83 (833)
                      +..+++|+.|++++|.++.++.+..+++|+.|+|++|+|+++.+  |..+++|++|+|++|+|+++.+..  . ++|++|
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~--~-~~L~~L  111 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIP--S-ACLSRL  111 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCC--C-SSCCEE
T ss_pred             hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCccc--c-CcccEE
Confidence            34578999999999999999999999999999999999998876  999999999999999999754432  3 899999


Q ss_pred             EccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCcccccccccc
Q 003296           84 VLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFS  163 (833)
Q Consensus        84 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~  163 (833)
                      +|++|.+++.  ..+..+++|+.|+|++|+|++. + .++.+++|++|+|++|.+++.  ..+..+++|+.|++++|.++
T Consensus       112 ~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          112 FLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             ECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             EccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence            9999999974  4699999999999999999975 3 699999999999999999977  67888888888888888876


Q ss_pred             cc
Q 003296          164 GS  165 (833)
Q Consensus       164 ~~  165 (833)
                      +.
T Consensus       186 ~~  187 (263)
T 1xeu_A          186 NE  187 (263)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.77  E-value=2.6e-18  Score=169.03  Aligned_cols=132  Identities=21%  Similarity=0.263  Sum_probs=121.2

Q ss_pred             CEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccc-cccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCc
Q 003296           11 KLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINL-QFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNA   89 (833)
Q Consensus        11 ~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~-~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~   89 (833)
                      +.+++++|.++.+|. .-..+|++|+|++|+|+++.+. .|..+++|++|+|++|+|+++.|..|.++++|++|+|++|+
T Consensus        11 ~~l~~s~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEcCCCCcCcCcc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            789999999999986 2234899999999999988875 59999999999999999999999999999999999999999


Q ss_pred             CcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCC
Q 003296           90 FHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLP  143 (833)
Q Consensus        90 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  143 (833)
                      |++..+..|.++++|++|+|++|+|++..|..|..+++|++|+|++|.+++..+
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            999999999999999999999999999999999999999999999999986543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.76  E-value=1.6e-20  Score=215.47  Aligned_cols=121  Identities=26%  Similarity=0.268  Sum_probs=66.5

Q ss_pred             CCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccC
Q 003296          245 LTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISW  324 (833)
Q Consensus       245 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  324 (833)
                      |+.|+|++|.|+++ |. |+.+++|+.|+|++|.|+ .+|..++.+++|+.|+|++|.|++ +| .|..+++|++|+|++
T Consensus       443 L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          443 VRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             CSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             ceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence            45555555555542 33 555555555555555555 445555555555555555555554 34 455566666666666


Q ss_pred             CcCcccC-ccccccCCCCCEEEccCCccccccCcc---ccCCCCCCEEEc
Q 003296          325 NSLSGSI-PSFLSNLTNLVNLNLRQNNLNGSIPNS---ITNMRSLIELQL  370 (833)
Q Consensus       325 N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~p~~---~~~l~~L~~L~L  370 (833)
                      |.|++.. |..|..+++|+.|+|++|++++..|..   +..+++|+.|++
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            6666554 556666666666666666665543321   233566666643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=7.2e-19  Score=189.02  Aligned_cols=102  Identities=13%  Similarity=0.085  Sum_probs=63.6

Q ss_pred             CCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCc-EEEccCCcCCCcCchhhcCCCcCcee
Q 003296          242 LEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQ-VMNLQLNKLSGEIPSQFSQLKLLSTM  320 (833)
Q Consensus       242 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~L  320 (833)
                      +++|+.|+|++|+++.+.+.+|.+|++|+.++|.+| +..+.+..|.++.+|+ .+++.+ .++.+.+.+|.++++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            455666666665555555555666666666666555 4444455566666666 666655 5555556667777777777


Q ss_pred             eccCCcCcccCccccccCCCCCEEE
Q 003296          321 NISWNSLSGSIPSFLSNLTNLVNLN  345 (833)
Q Consensus       321 ~Ls~N~l~~~~~~~~~~l~~L~~L~  345 (833)
                      +++.|+++.+.+.+|.++++|+.++
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EeCCCccCccchhhhcCCcchhhhc
Confidence            7777777666666777777777665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=8.1e-19  Score=188.62  Aligned_cols=289  Identities=12%  Similarity=0.065  Sum_probs=193.5

Q ss_pred             CCCCCEEECCCCCCCCcccccccC-CCCCCEEeCcCCcCC--CCCCcccCCCCCCCEEEccCCcCcccCCccccC-----
Q 003296           29 FAGLEVLDFSSNNLNGNINLQFDE-LVSLKSLNLSKNKFN--GFLPINLGKTKALEELVLSGNAFHGEIPKGIAD-----  100 (833)
Q Consensus        29 l~~L~~L~Ls~N~l~~~~~~~f~~-l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-----  100 (833)
                      +.+++.|.++++ +....-..+.. +++|++|||++|+|.  ...+..+   +.+..+.+..|.   +.+.+|.+     
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~---I~~~aF~~~~~~~   96 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANF---VPAYAFSNVVNGV   96 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTE---ECTTTTEEEETTE
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---cccccccccccc---cCHHHhccccccc
Confidence            446777777754 22111122333 677888888888877  3222222   224555555552   44566666     


Q ss_pred             ---CCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEE
Q 003296          101 ---YRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNL  177 (833)
Q Consensus       101 ---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L  177 (833)
                         +++|+.|+|++ .++.+.+.+|.++++|+.|+|++|.++.+.+..|.++.++..+....+...              
T Consensus        97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~--------------  161 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY--------------  161 (329)
T ss_dssp             EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH--------------
T ss_pred             ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh--------------
Confidence               88888888888 777777788888888888888888887777777776655544433321110              


Q ss_pred             ecccccccccCCccCCCCCCCC-EEecccccCcccCCCCCCcCCcEEEcCCccccCCCCcccc---CCCCCCCEEECCCC
Q 003296          178 DLSYNKLLGVIPIDLLSHPNLQ-TIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATF---TSLEKLTYLELDNN  253 (833)
Q Consensus       178 ~Ls~N~l~~~~~~~~~~~~~L~-~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f---~~l~~L~~L~L~~N  253 (833)
                          .......+..|.++..|+ .+++....                         .++...+   ....+++.+.+.++
T Consensus       162 ----~~~~~i~~~~f~~~~~L~~~i~~~~~~-------------------------~l~~~~~~~~~~~~~~~~l~~~~~  212 (329)
T 3sb4_A          162 ----RFKNRWEHFAFIEGEPLETTIQVGAMG-------------------------KLEDEIMKAGLQPRDINFLTIEGK  212 (329)
T ss_dssp             ----HTSTTTTTSCEEESCCCEEEEEECTTC-------------------------CHHHHHHHTTCCGGGCSEEEEEEC
T ss_pred             ----hccccccccccccccccceeEEecCCC-------------------------cHHHHHhhcccCccccceEEEeee
Confidence                001112223344444454 33332211                         0111111   12456667776655


Q ss_pred             CCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCc-eeeccCCcCcccCc
Q 003296          254 SFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLS-TMNISWNSLSGSIP  332 (833)
Q Consensus       254 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~~  332 (833)
                      -...........|++|+.++|++|+++...+..|.++.+|+.+++.+| ++.+.+.+|.++.+|+ .+++.+ .++.+.+
T Consensus       213 l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~  290 (329)
T 3sb4_A          213 LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF  290 (329)
T ss_dssp             CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT
T ss_pred             ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch
Confidence            222111111224899999999999999878888999999999999998 8888889999999999 999998 7887888


Q ss_pred             cccccCCCCCEEEccCCccccccCccccCCCCCCEEEc
Q 003296          333 SFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQL  370 (833)
Q Consensus       333 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  370 (833)
                      .+|.++++|+.+++++|+++.+.+.+|.++++|+.++.
T Consensus       291 ~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          291 GAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             hhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            99999999999999999999888899999999999874

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.73  E-value=1.3e-18  Score=206.06  Aligned_cols=185  Identities=21%  Similarity=0.214  Sum_probs=117.8

Q ss_pred             CCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCC---------cccccccCCCCCCEEeCcCCcCCCCCCcccCCCC
Q 003296            8 DGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNG---------NINLQFDELVSLKSLNLSKNKFNGFLPINLGKTK   78 (833)
Q Consensus         8 ~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~---------~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~   78 (833)
                      +.++.|+|++|.+..++.    ..|+.++|+.|.|.+         +.+..|..+++|+.|+|++|.|.. +|..+..++
T Consensus       173 ~~~~~l~L~~n~~~~~~~----~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~  247 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQ----ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFN-ISANIFKYD  247 (727)
T ss_dssp             -----------------------------------------------------CCCCCCEEECTTSCCSC-CCGGGGGCC
T ss_pred             CccceEEeeCCCCCcchh----hHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCC-CChhhcCCC
Confidence            457889999999887642    123344444444433         457889999999999999999995 565666899


Q ss_pred             CCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccc
Q 003296           79 ALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAAN  158 (833)
Q Consensus        79 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~  158 (833)
                      +|++|+|++|.|+ .+|..|+++++|++|+|++|+|+ .+|..|++|++|++|+|++|.|+ .+|..|+.+++|+.|+++
T Consensus       248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred             CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence            9999999999999 78899999999999999999999 67999999999999999999998 668889999999999999


Q ss_pred             cccccccCChhhhh---cCCEEecccccccccCCccCCCCCCCCEEecccc
Q 003296          159 QNKFSGSVPGGITR---FLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVN  206 (833)
Q Consensus       159 ~n~l~~~~p~~~~~---~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N  206 (833)
                      +|.|++.+|..+..   .+..|+|++|.+.+.+|.      .|+.|+++.|
T Consensus       325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n  369 (727)
T 4b8c_D          325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD  369 (727)
T ss_dssp             TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred             CCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence            99999888876622   123467888888876664      4556666666

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.73  E-value=2.8e-17  Score=161.61  Aligned_cols=129  Identities=22%  Similarity=0.255  Sum_probs=117.5

Q ss_pred             CCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCc
Q 003296           10 LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNA   89 (833)
Q Consensus        10 L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~   89 (833)
                      -+.+++++|.|+.+|. .-.++|+.|+|++|+|+.+ |..|.++++|++|+|++|+|+++.+..|.++++|++|+|++|+
T Consensus        12 ~~~l~~~~~~l~~ip~-~~~~~l~~L~L~~n~i~~i-p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPK-GIPRDVTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TTEEECTTSCCSSCCS-CCCTTCCEEECCSSCCCSC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEcCCCCCCcCCC-CCCCCCCEEECCCCcCchh-HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            3689999999999985 2347899999999999855 4789999999999999999999989999999999999999999


Q ss_pred             CcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCC
Q 003296           90 FHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDG  140 (833)
Q Consensus        90 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  140 (833)
                      |+++.|..|.++++|++|+|++|+|+++.+..|..+++|+.|+|++|.+..
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            999999999999999999999999998888889999999999999998874

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=8.4e-18  Score=166.22  Aligned_cols=154  Identities=17%  Similarity=0.285  Sum_probs=113.0

Q ss_pred             cCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 003296           27 NGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTL  106 (833)
Q Consensus        27 ~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  106 (833)
                      ..+++|+.|++++|.|+.+.  .+..+++|++|++++|.++.  +..+..+++|++|+|++|.+++..+..|+.+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            45677888888888888544  57788888888888887763  346788888888888888888777888888888888


Q ss_pred             EeccCCcCCccCCccccCCCCCcEEECcCCc-CCCCCCcccccCCccCccccccccccccCChhhhhcCCEEeccccccc
Q 003296          107 IDLSANNLSGSVPDRIGELSKLEVLILSANN-LDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLL  185 (833)
Q Consensus       107 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~  185 (833)
                      |+|++|++++..|..|+.+++|++|+|++|. ++. +| .+..+++                      |+.|++++|++.
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~----------------------L~~L~l~~n~i~  172 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPE----------------------LKSLNIQFDGVH  172 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSS----------------------CCEEECTTBCCC
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCC----------------------CCEEECCCCCCc
Confidence            8888888887777888888888888888887 543 33 4555444                      566666666665


Q ss_pred             ccCCccCCCCCCCCEEecccccCcc
Q 003296          186 GVIPIDLLSHPNLQTIDLSVNMLEG  210 (833)
Q Consensus       186 ~~~~~~~~~~~~L~~L~Ls~N~l~~  210 (833)
                      +..  .+..+++|++|++++|++.+
T Consensus       173 ~~~--~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          173 DYR--GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCT--TGGGCSSCCEEEECBC----
T ss_pred             ChH--HhccCCCCCEEEeeCcccCC
Confidence            532  56667888888888887753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.73  E-value=3e-17  Score=159.21  Aligned_cols=134  Identities=23%  Similarity=0.244  Sum_probs=121.5

Q ss_pred             CCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCC
Q 003296            9 GLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGN   88 (833)
Q Consensus         9 ~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N   88 (833)
                      ..+.+++++|.++.+|. ...++|+.|++++|+++++.+..|..+++|++|+|++|+|+++.+..|..+++|++|+|++|
T Consensus         8 ~~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             ETTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            35789999999999984 34579999999999999998888999999999999999999888888999999999999999


Q ss_pred             cCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCC
Q 003296           89 AFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLP  143 (833)
Q Consensus        89 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  143 (833)
                      .|++..+..|..+++|++|+|++|+|+++.+..|..+++|++|+|++|.+++..|
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9998888889999999999999999998888788999999999999999986543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=1.3e-17  Score=163.89  Aligned_cols=132  Identities=18%  Similarity=0.233  Sum_probs=121.3

Q ss_pred             CEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCc-ccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccC
Q 003296           33 EVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPI-NLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSA  111 (833)
Q Consensus        33 ~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  111 (833)
                      +.+++++|+++.+....+   .+|++|+|++|+|+++.+. .|..+++|++|+|++|.|++..|..|.++++|++|+|++
T Consensus        11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            789999999986655333   3999999999999988775 589999999999999999999999999999999999999


Q ss_pred             CcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCC
Q 003296          112 NNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVP  167 (833)
Q Consensus       112 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p  167 (833)
                      |+|++..+..|.++++|++|+|++|+|++..|..|..+++|+.|++++|.+++..+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            99999999999999999999999999999999999999999999999999987655

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=3.7e-20  Score=212.55  Aligned_cols=204  Identities=20%  Similarity=0.164  Sum_probs=154.2

Q ss_pred             cCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCc-------------CCCCCCcccccCCccCccc-cccccccc
Q 003296           99 ADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANN-------------LDGRLPTSLASITTLSRFA-ANQNKFSG  164 (833)
Q Consensus        99 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-------------l~~~~p~~~~~l~~L~~l~-l~~n~l~~  164 (833)
                      ...++|+.|+|++|+|+ .+|..++++++|+.|++++|.             +.+..|..+..+++|+.|+ ++.|.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            44566666666666665 456666666666666665553             4566677777777777777 5555442 


Q ss_pred             cCChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCC
Q 003296          165 SVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEK  244 (833)
Q Consensus       165 ~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~  244 (833)
                              .|+.+.+++|.+....+      ..|+.|+|++|.+++                       +|.  |..+++
T Consensus       424 --------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-----------------------lp~--~~~l~~  464 (567)
T 1dce_A          424 --------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-----------------------LCH--LEQLLL  464 (567)
T ss_dssp             --------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-----------------------CCC--GGGGTT
T ss_pred             --------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-----------------------CcC--cccccc
Confidence                    35566677777765433      247777777777652                       332  677889


Q ss_pred             CCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcC-chhhcCCCcCceeecc
Q 003296          245 LTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEI-PSQFSQLKLLSTMNIS  323 (833)
Q Consensus       245 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~Ls  323 (833)
                      |+.|+|++|+|+ .+|..|+.+++|+.|+|++|.|++ +| .++.+++|+.|+|++|+|++.. |..|..+++|+.|+|+
T Consensus       465 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~  541 (567)
T 1dce_A          465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ  541 (567)
T ss_dssp             CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred             CcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence            999999999999 668899999999999999999986 66 8999999999999999999887 8999999999999999


Q ss_pred             CCcCcccCccc---cccCCCCCEEEc
Q 003296          324 WNSLSGSIPSF---LSNLTNLVNLNL  346 (833)
Q Consensus       324 ~N~l~~~~~~~---~~~l~~L~~L~L  346 (833)
                      +|.+++..|..   +..+++|+.|++
T Consensus       542 ~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          542 GNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             TSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCcCCCCccHHHHHHHHCcccCccCC
Confidence            99999776532   345889999875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.71  E-value=3.1e-18  Score=202.79  Aligned_cols=166  Identities=19%  Similarity=0.176  Sum_probs=123.1

Q ss_pred             CCCEEECCCCCCCCc----------c-cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCC
Q 003296            9 GLKLLNFSKNELVSL----------P-TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKT   77 (833)
Q Consensus         9 ~L~~L~ls~N~l~~i----------~-~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l   77 (833)
                      .|+.++|+.|.|..+          + .|..++.|+.|+|++|.|..+.+. +.++++|++|+|++|.|+ .+|..|+.+
T Consensus       192 ~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  269 (727)
T 4b8c_D          192 LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLT-ELPAEIKNL  269 (727)
T ss_dssp             ------------------------------CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTSCCS-CCCGGGGGG
T ss_pred             HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCCcCc-ccChhhhCC
Confidence            355666666665442          2 488899999999999999965554 458999999999999999 678899999


Q ss_pred             CCCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCcc-Cccc
Q 003296           78 KALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTL-SRFA  156 (833)
Q Consensus        78 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-~~l~  156 (833)
                      ++|++|+|++|.|+ .+|..|+++++|++|+|++|.|+ .+|..|++|++|++|+|++|.|++.+|..+..+... ..++
T Consensus       270 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~  347 (727)
T 4b8c_D          270 SNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY  347 (727)
T ss_dssp             TTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHh
Confidence            99999999999999 67999999999999999999998 567789999999999999999999999888765332 3478


Q ss_pred             cccccccccCChhhhhcCCEEecccc
Q 003296          157 ANQNKFSGSVPGGITRFLRNLDLSYN  182 (833)
Q Consensus       157 l~~n~l~~~~p~~~~~~L~~L~Ls~N  182 (833)
                      +.+|.+++.+|.    .|+.|+++.|
T Consensus       348 l~~N~l~~~~p~----~l~~l~l~~n  369 (727)
T 4b8c_D          348 LRDNRPEIPLPH----ERRFIEINTD  369 (727)
T ss_dssp             HHHCCCCCCCCC----C---------
T ss_pred             hccCcccCcCcc----ccceeEeecc
Confidence            999999988875    4667888877

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.69  E-value=1e-15  Score=167.97  Aligned_cols=128  Identities=11%  Similarity=0.114  Sum_probs=68.3

Q ss_pred             CCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccC-----CCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCc
Q 003296          244 KLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELN-----GSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLS  318 (833)
Q Consensus       244 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  318 (833)
                      +|+.+.| .+.++.+...+|.+|++|+.+++.+|.+.     ...+..|.++.+|+.+++. +.++.+....|.++.+|+
T Consensus       249 ~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~  326 (401)
T 4fdw_A          249 GITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVT  326 (401)
T ss_dssp             CCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCC
T ss_pred             CccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCcc
Confidence            4444444 22333333444444444444444444332     2233445555555555555 335545555666666666


Q ss_pred             eeeccCCcCcccCccccccCCCCCEEEccCCccccccCccccCCC-CCCEEEccCCcC
Q 003296          319 TMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMR-SLIELQLGGNQL  375 (833)
Q Consensus       319 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l  375 (833)
                      .++|..| ++.+-+.+|.++ +|+.+++++|.+....+..|.+++ +++.|++..+.+
T Consensus       327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            6666443 554555666666 666666666666655556666663 566666666543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.69  E-value=1.3e-15  Score=167.06  Aligned_cols=270  Identities=12%  Similarity=0.138  Sum_probs=140.1

Q ss_pred             CCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 003296           28 GFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLI  107 (833)
Q Consensus        28 ~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  107 (833)
                      .+..++.+.+.+ .++.+...+|.+. +|+.++|..| ++.+...+|.+. +|+++.|.. .++.+.+.+|.++.+|+.+
T Consensus       111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence            345566666653 3555556666664 5666666554 555556666653 466666664 4555555666666666666


Q ss_pred             eccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhh-hhcCCEEecccccccc
Q 003296          108 DLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGI-TRFLRNLDLSYNKLLG  186 (833)
Q Consensus       108 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~-~~~L~~L~Ls~N~l~~  186 (833)
                      +|+.|+++.+...+|. ..+|+.+.|..+ ++.+....|.++.+|+.+.+..| ++..-...+ ...|+.+.| .+.+..
T Consensus       186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~  261 (401)
T 4fdw_A          186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTN  261 (401)
T ss_dssp             ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCE
T ss_pred             ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCccE
Confidence            6666666655555565 366666666533 55555556666665555554432 111111111 012444444 233444


Q ss_pred             cCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCC
Q 003296          187 VIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSC  266 (833)
Q Consensus       187 ~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l  266 (833)
                      +.+..|..+++|+.+++.+|.+...                 . ...++..+|.++++|+.++|. +.++.+...+|.+|
T Consensus       262 I~~~aF~~c~~L~~l~l~~~~~~~~-----------------~-~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c  322 (401)
T 4fdw_A          262 IASRAFYYCPELAEVTTYGSTFNDD-----------------P-EAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGN  322 (401)
T ss_dssp             ECTTTTTTCTTCCEEEEESSCCCCC-----------------T-TCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTC
T ss_pred             EChhHhhCCCCCCEEEeCCccccCC-----------------c-ccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCC
Confidence            4444555555555555555443200                 0 012344455555555555555 33444445555555


Q ss_pred             CCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCC-CCCEEE
Q 003296          267 RSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLT-NLVNLN  345 (833)
Q Consensus       267 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~  345 (833)
                      .+|+.+.|..|                         ++.+.+.+|.++ +|+.+++++|.+....+..|.+++ +++.|+
T Consensus       323 ~~L~~l~lp~~-------------------------l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~  376 (401)
T 4fdw_A          323 RKVTQLTIPAN-------------------------VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIR  376 (401)
T ss_dssp             CSCCEEEECTT-------------------------CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEE
T ss_pred             CCccEEEECcc-------------------------ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEE
Confidence            55555555332                         333344455555 555555555555544455555553 555666


Q ss_pred             ccCCcc
Q 003296          346 LRQNNL  351 (833)
Q Consensus       346 L~~N~l  351 (833)
                      +..+.+
T Consensus       377 vp~~~~  382 (401)
T 4fdw_A          377 VPAESV  382 (401)
T ss_dssp             ECGGGH
T ss_pred             eCHHHH
Confidence            655544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.69  E-value=3.6e-17  Score=157.21  Aligned_cols=133  Identities=23%  Similarity=0.222  Sum_probs=75.0

Q ss_pred             CCCCCEEECCCCCCC-CcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 003296           29 FAGLEVLDFSSNNLN-GNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLI  107 (833)
Q Consensus        29 l~~L~~L~Ls~N~l~-~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  107 (833)
                      .++|+.|+|++|+++ +.+|..|..+++|++|+|++|.|+++  ..|..+++|++|+|++|.+++.+|..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            345566666666655 33444455556666666666665544  455555666666666666655555555555666666


Q ss_pred             eccCCcCCccCC-ccccCCCCCcEEECcCCcCCCCCC---cccccCCccCcccccccccc
Q 003296          108 DLSANNLSGSVP-DRIGELSKLEVLILSANNLDGRLP---TSLASITTLSRFAANQNKFS  163 (833)
Q Consensus       108 ~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~l~l~~n~l~  163 (833)
                      +|++|.|++..+ ..|..+++|++|+|++|.+++..+   ..+..+++|+.|+++.|.+.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            666666554322 455556666666666666654444   35555666666666555554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.67  E-value=2.6e-15  Score=165.47  Aligned_cols=305  Identities=13%  Similarity=0.103  Sum_probs=127.5

Q ss_pred             cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCC
Q 003296           25 TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNL  104 (833)
Q Consensus        25 ~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  104 (833)
                      +|.++.+|+.+.|.. .++.+...+|.++.+|+.++|..+ ++.+...+|.++.+|+.+.+..+ +..+...+|.+...+
T Consensus        66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~  142 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK  142 (394)
T ss_dssp             TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred             HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence            355566666666653 355555556666666666666533 44445555555555655555433 333444444444333


Q ss_pred             CEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhh--hhcCCEEecccc
Q 003296          105 TLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGI--TRFLRNLDLSYN  182 (833)
Q Consensus       105 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~--~~~L~~L~Ls~N  182 (833)
                      .......  +..+...+|.++++|+.+.+..+ ++.+....|.++.+|+.+.+..+ +...-...+  ...|+.+.+..+
T Consensus       143 ~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~  218 (394)
T 4fs7_A          143 EITIPEG--VTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS  218 (394)
T ss_dssp             EEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred             ccccCcc--ccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence            3222221  12233344555555555555433 22234444555555555544333 111111111  122444444333


Q ss_pred             cccccCCccCCCCCCCCEEecccccCcccCCCCC--CcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCC
Q 003296          183 KLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNM--SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIP  260 (833)
Q Consensus       183 ~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~  260 (833)
                      ...  +...+....+|+.+.+..+. +..-...+  ...++.+.+..+..  .+....|..+..++.+.+..+.+   ..
T Consensus       219 ~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i---~~  290 (394)
T 4fs7_A          219 LYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIV---PE  290 (394)
T ss_dssp             CCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEE---CT
T ss_pred             ceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcc--eeeccccccccccceeccCceee---cc
Confidence            211  12223334556655554321 10000011  02233333322211  13333444444444444433321   12


Q ss_pred             ccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCC
Q 003296          261 QQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTN  340 (833)
Q Consensus       261 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  340 (833)
                      ..|..+.+|+.+.+..+ +...-...|.++.+|+.+++..+ ++.+...+|.++.+|+.+++..| ++.+-..+|.++++
T Consensus       291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~  367 (394)
T 4fs7_A          291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN  367 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred             ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence            23444444444444332 22223334444444444444322 33333444444445555544433 33333444445555


Q ss_pred             CCEEEcc
Q 003296          341 LVNLNLR  347 (833)
Q Consensus       341 L~~L~L~  347 (833)
                      |+.+++.
T Consensus       368 L~~i~lp  374 (394)
T 4fs7_A          368 LKKVELP  374 (394)
T ss_dssp             CCEEEEE
T ss_pred             CCEEEEC
Confidence            5555444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.67  E-value=9.7e-17  Score=154.18  Aligned_cols=134  Identities=21%  Similarity=0.176  Sum_probs=116.1

Q ss_pred             CCCCCCEEECCCCCCC--Cccc-ccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCE
Q 003296            6 GIDGLKLLNFSKNELV--SLPT-FNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEE   82 (833)
Q Consensus         6 ~l~~L~~L~ls~N~l~--~i~~-f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~   82 (833)
                      ..++|+.|++++|.++  .+|. |..+++|++|+|++|.|+++  ..|..+++|++|+|++|+|++.+|..+..+++|++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            4578999999999998  6764 68889999999999999887  78899999999999999999878888888999999


Q ss_pred             EEccCCcCcccCC-ccccCCCCCCEEeccCCcCCccCC---ccccCCCCCcEEECcCCcCCCC
Q 003296           83 LVLSGNAFHGEIP-KGIADYRNLTLIDLSANNLSGSVP---DRIGELSKLEVLILSANNLDGR  141 (833)
Q Consensus        83 L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~  141 (833)
                      |+|++|.+++..+ ..+..+++|+.|+|++|.+++..+   ..|..+++|++|++++|.+...
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            9999999986533 788999999999999999987665   5889999999999999988743

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.66  E-value=8.9e-17  Score=151.05  Aligned_cols=127  Identities=21%  Similarity=0.238  Sum_probs=83.8

Q ss_pred             CCCCCEEECCCCCCC-CcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 003296           29 FAGLEVLDFSSNNLN-GNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLI  107 (833)
Q Consensus        29 l~~L~~L~Ls~N~l~-~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  107 (833)
                      .++|+.|++++|.++ +..+..|..+++|++|+|++|.|+++  ..|..+++|++|+|++|.+++.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            456677777777776 45555666777777777777777655  556667777777777777766566666667777777


Q ss_pred             eccCCcCCcc-CCccccCCCCCcEEECcCCcCCCCCC---cccccCCccCcccc
Q 003296          108 DLSANNLSGS-VPDRIGELSKLEVLILSANNLDGRLP---TSLASITTLSRFAA  157 (833)
Q Consensus       108 ~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~l~l  157 (833)
                      ++++|.+++. .+..++.+++|++|++++|.+++..+   ..+..+++|+.|++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            7777777653 23566777777777777777765544   45566666555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.66  E-value=5.1e-16  Score=152.52  Aligned_cols=129  Identities=22%  Similarity=0.215  Sum_probs=116.5

Q ss_pred             CCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccC
Q 003296           32 LEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSA  111 (833)
Q Consensus        32 L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  111 (833)
                      -+++++++|+|+.+....+   ++|++|+|++|+|+. +|..|..+++|++|+|++|.|+++.+..|.++++|+.|+|++
T Consensus        12 ~~~l~~~~~~l~~ip~~~~---~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPKGIP---RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TTEEECTTSCCSSCCSCCC---TTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCCCcCCCCCC---CCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            3689999999997654432   689999999999984 668999999999999999999999999999999999999999


Q ss_pred             CcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccc
Q 003296          112 NNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSG  164 (833)
Q Consensus       112 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~  164 (833)
                      |+|+++.|..|.++++|++|+|++|.|+...+..|..+++|+.|++++|.+..
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            99999999999999999999999999998888889999998888888888764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.66  E-value=6.7e-17  Score=151.92  Aligned_cols=128  Identities=24%  Similarity=0.226  Sum_probs=116.0

Q ss_pred             CCCCCCEEECCCCCCC--Cccc-ccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCE
Q 003296            6 GIDGLKLLNFSKNELV--SLPT-FNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEE   82 (833)
Q Consensus         6 ~l~~L~~L~ls~N~l~--~i~~-f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~   82 (833)
                      ..++|+.|++++|.++  .+|. |..+++|++|++++|+|+++  ..|..+++|++|+|++|.|++.+|..+..+++|++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            3478999999999999  5764 78899999999999999987  78999999999999999999888888888999999


Q ss_pred             EEccCCcCccc-CCccccCCCCCCEEeccCCcCCccCC---ccccCCCCCcEEECcC
Q 003296           83 LVLSGNAFHGE-IPKGIADYRNLTLIDLSANNLSGSVP---DRIGELSKLEVLILSA  135 (833)
Q Consensus        83 L~L~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~  135 (833)
                      |+|++|.+++. .+..+..+++|++|++++|.+++..+   ..|+.+++|++|++++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999999974 45889999999999999999998766   6899999999999874

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.66  E-value=7.1e-17  Score=156.41  Aligned_cols=135  Identities=13%  Similarity=0.152  Sum_probs=87.5

Q ss_pred             cccccCCCCCCEEECCCCCCCCcccccccCCC-CCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCC
Q 003296           23 LPTFNGFAGLEVLDFSSNNLNGNINLQFDELV-SLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADY  101 (833)
Q Consensus        23 i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  101 (833)
                      .+.|..+++|+.|+|++|+|+.+ +. +..+. +|++|+|++|.|+++  ..|..+++|++|+|++|.|++..+..|..+
T Consensus        12 ~~~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l   87 (176)
T 1a9n_A           12 AAQYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQAL   87 (176)
T ss_dssp             SCEEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred             HHhcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcC
Confidence            34566666777777777777654 32 33333 777777777777654  456667777777777777776555555677


Q ss_pred             CCCCEEeccCCcCCccCCc--cccCCCCCcEEECcCCcCCCCCCc----ccccCCccCcccccccccc
Q 003296          102 RNLTLIDLSANNLSGSVPD--RIGELSKLEVLILSANNLDGRLPT----SLASITTLSRFAANQNKFS  163 (833)
Q Consensus       102 ~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~l~l~~n~l~  163 (833)
                      ++|++|+|++|+|+. +|.  .+..+++|++|+|++|.++. .|.    .+..+++|+.|+++.|...
T Consensus        88 ~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           88 PDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             TTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            777777777777753 333  56677777777777777763 344    3667777777777776654

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.66  E-value=1.8e-17  Score=177.18  Aligned_cols=140  Identities=13%  Similarity=0.028  Sum_probs=96.9

Q ss_pred             cCCccccccCcccEEEEEEcCCCceEEEEEccccchhh----------hccChhHH--------HHHHHHHhcCCCCCcc
Q 003296          557 ANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIF----------QLGSHHKF--------DKELEVLGKLSNSNVM  618 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~----------~~~~~~~~--------~~E~~~l~~l~H~niv  618 (833)
                      |.....||+|+||.||+|..++|+.||||+++......          ........        .+|...|.++.+..+.
T Consensus        97 Y~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~  176 (397)
T 4gyi_A           97 YSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFP  176 (397)
T ss_dssp             SEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             EEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            66788999999999999999999999999874221100          00111122        3455555555433332


Q ss_pred             cceEEEecCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC
Q 003296          619 TPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE  698 (833)
Q Consensus       619 ~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~  698 (833)
                      ...-+..  ...+|||||++|++|.++...      +  ....++.|++.||.|||   ..+||||||||.|||+++++.
T Consensus       177 vp~p~~~--~~~~LVME~i~G~~L~~l~~~------~--~~~~l~~qll~~l~~lH---~~gIVHrDLKp~NILl~~dgd  243 (397)
T 4gyi_A          177 VPEPIAQ--SRHTIVMSLVDALPMRQVSSV------P--DPASLYADLIALILRLA---KHGLIHGDFNEFNILIREEKD  243 (397)
T ss_dssp             CCCEEEE--ETTEEEEECCSCEEGGGCCCC------S--CHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEEEEEC
T ss_pred             CCeeeec--cCceEEEEecCCccHhhhccc------H--HHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeCCCC
Confidence            2111111  234799999999998765432      1  23457899999999999   778999999999999987763


Q ss_pred             ----------ceeccceeeee
Q 003296          699 ----------PQIGDIELCKV  709 (833)
Q Consensus       699 ----------~ki~dfgl~~~  709 (833)
                                +.|+||+-+..
T Consensus       244 ~~d~~~~~~~~~iID~~Q~V~  264 (397)
T 4gyi_A          244 AEDPSSITLTPIIIXFPQMVS  264 (397)
T ss_dssp             SSCTTSEEEEEEECCCTTCEE
T ss_pred             cccccccccceEEEEeCCccc
Confidence                      67999986654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.65  E-value=7.6e-16  Score=149.29  Aligned_cols=134  Identities=22%  Similarity=0.210  Sum_probs=119.6

Q ss_pred             CCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecc
Q 003296           31 GLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLS  110 (833)
Q Consensus        31 ~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  110 (833)
                      ..+.+++++|+++.+....   .++|++|+|++|+++++.+..|..+++|++|+|++|.+++..+..|..+++|+.|+|+
T Consensus         8 ~~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             ETTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            3578999999998765433   3799999999999999888889999999999999999998888889999999999999


Q ss_pred             CCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCC
Q 003296          111 ANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVP  167 (833)
Q Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p  167 (833)
                      +|+|++..+..|..+++|++|+|++|.|++..+..|..+++|+.|++++|.+++..|
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            999998888889999999999999999998877778889999888888888876554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.63  E-value=1.9e-16  Score=153.43  Aligned_cols=132  Identities=18%  Similarity=0.207  Sum_probs=110.1

Q ss_pred             CCCCCCCCEEECCCCCCCCcccccCCC-CCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCE
Q 003296            4 CGGIDGLKLLNFSKNELVSLPTFNGFA-GLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEE   82 (833)
Q Consensus         4 ~~~l~~L~~L~ls~N~l~~i~~f~~l~-~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~   82 (833)
                      +.++.+|+.|++++|.++.+|.+..+. +|++|||++|+|+++  ..|..+++|++|+|++|+|+++++..|..+++|++
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            456788999999999999887766655 899999999999876  57888999999999999999876666788999999


Q ss_pred             EEccCCcCcccCCc--cccCCCCCCEEeccCCcCCccCCc----cccCCCCCcEEECcCCcCC
Q 003296           83 LVLSGNAFHGEIPK--GIADYRNLTLIDLSANNLSGSVPD----RIGELSKLEVLILSANNLD  139 (833)
Q Consensus        83 L~L~~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~  139 (833)
                      |+|++|.|+. +|.  .+..+++|+.|+|++|.++. .|.    .+..+++|++|+++.|.+.
T Consensus        93 L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            9999999964 454  78889999999999999874 454    4888999999999988764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.61  E-value=3.6e-14  Score=156.32  Aligned_cols=316  Identities=11%  Similarity=0.060  Sum_probs=242.7

Q ss_pred             CCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCc
Q 003296           41 NLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPD  120 (833)
Q Consensus        41 ~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~  120 (833)
                      +++.|...+|.++.+|+.+.|.. .++.+...+|.++.+|+.++|..+ ++.+...+|.++.+|+.+.+..+ +..+...
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~  134 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE  134 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred             eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence            46778889999999999999974 588888999999999999999865 77677889999999999988765 6667778


Q ss_pred             cccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhh--hhcCCEEecccccccccCCccCCCCCCC
Q 003296          121 RIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGI--TRFLRNLDLSYNKLLGVIPIDLLSHPNL  198 (833)
Q Consensus       121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~--~~~L~~L~Ls~N~l~~~~~~~~~~~~~L  198 (833)
                      +|.+...++......  +.......|.++.+|+.+.+..+.. ..-...+  ...|+.+++..| +..+....|.++..|
T Consensus       135 aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L  210 (394)
T 4fs7_A          135 AFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL  210 (394)
T ss_dssp             TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred             eeecccccccccCcc--ccccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence            898887655554433  3334567899999999988865432 1222223  345888888766 565667778888999


Q ss_pred             CEEecccccCcccCCCCC-CcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCC
Q 003296          199 QTIDLSVNMLEGSLPQNM-SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQN  277 (833)
Q Consensus       199 ~~L~Ls~N~l~~~~p~~~-~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  277 (833)
                      +.+.+..+...- ....+ ..+++.+.+..+.  ..+....|..+..|+.+.+..+... +....|..+..++.+....+
T Consensus       211 ~~i~~~~~~~~i-~~~~~~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~  286 (394)
T 4fs7_A          211 ENMEFPNSLYYL-GDFALSKTGVKNIIIPDSF--TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSV  286 (394)
T ss_dssp             CBCCCCTTCCEE-CTTTTTTCCCCEEEECTTC--CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSS
T ss_pred             ceeecCCCceEe-ehhhcccCCCceEEECCCc--eecccccccccccceeEEcCCCcce-eeccccccccccceeccCce
Confidence            988887765431 11112 2578888776543  2466678889999999999877543 66778999999999988776


Q ss_pred             ccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccCc
Q 003296          278 ELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPN  357 (833)
Q Consensus       278 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~  357 (833)
                      .+.   ...|..+.+|+.+.+..+ ++.+...+|.++.+|+.+++.++ ++.+-..+|.++++|+.+++..| ++.+-..
T Consensus       287 ~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~  360 (394)
T 4fs7_A          287 IVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN  360 (394)
T ss_dssp             EEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred             eec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence            543   356788899999998754 66677788999999999999754 77666788999999999999877 7767788


Q ss_pred             cccCCCCCCEEEccCC
Q 003296          358 SITNMRSLIELQLGGN  373 (833)
Q Consensus       358 ~~~~l~~L~~L~L~~N  373 (833)
                      +|.++.+|+.+++..+
T Consensus       361 aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          361 AFQGCINLKKVELPKR  376 (394)
T ss_dssp             TBTTCTTCCEEEEEGG
T ss_pred             HhhCCCCCCEEEECCC
Confidence            9999999999988754

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.58  E-value=8.8e-15  Score=140.50  Aligned_cols=87  Identities=21%  Similarity=0.201  Sum_probs=44.4

Q ss_pred             CCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEEC
Q 003296           54 VSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLIL  133 (833)
Q Consensus        54 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  133 (833)
                      ++|++|+|++|+|+++.|..|..+++|++|+|++|+|+++.+..|.++++|++|+|++|+|+++.+..|..+++|++|+|
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            34444444444444444444444444444444444444444444455555555555555555544445555555555555


Q ss_pred             cCCcCCC
Q 003296          134 SANNLDG  140 (833)
Q Consensus       134 s~N~l~~  140 (833)
                      ++|.++.
T Consensus       110 ~~N~~~c  116 (170)
T 3g39_A          110 LNNPWDC  116 (170)
T ss_dssp             CSSCBCT
T ss_pred             CCCCCCC
Confidence            5555553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.56  E-value=1.7e-14  Score=138.48  Aligned_cols=109  Identities=23%  Similarity=0.215  Sum_probs=96.9

Q ss_pred             CCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCC
Q 003296            9 GLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGN   88 (833)
Q Consensus         9 ~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N   88 (833)
                      ..+.+++++|.|+.+|. .-.++|++|+|++|+|+++.+..|.++++|++|+|++|+|+++.+..|..+++|++|+|++|
T Consensus        10 ~~~~l~~s~n~l~~ip~-~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPT-GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             ETTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEEeCCCCcCccCc-cCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            35789999999999985 22488999999999999999999999999999999999999888888999999999999999


Q ss_pred             cCcccCCccccCCCCCCEEeccCCcCCccC
Q 003296           89 AFHGEIPKGIADYRNLTLIDLSANNLSGSV  118 (833)
Q Consensus        89 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  118 (833)
                      +|+++.+..|..+++|++|+|++|.++...
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            999888888999999999999999987543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.56  E-value=2.1e-14  Score=138.37  Aligned_cols=86  Identities=21%  Similarity=0.245  Sum_probs=43.4

Q ss_pred             CCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEEC
Q 003296           54 VSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLIL  133 (833)
Q Consensus        54 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  133 (833)
                      ++|++|+|++|+|+++.|..|..+++|++|+|++|+|+++.+..|.++++|++|+|++|+|+++.+..|..+++|++|+|
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            34444444444444444444444444444444444444444444455555555555555555444444555555555666


Q ss_pred             cCCcCC
Q 003296          134 SANNLD  139 (833)
Q Consensus       134 s~N~l~  139 (833)
                      ++|.+.
T Consensus       113 ~~N~~~  118 (174)
T 2r9u_A          113 YNNPWD  118 (174)
T ss_dssp             CSSCBC
T ss_pred             CCCCcc
Confidence            665555

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.53  E-value=4.7e-14  Score=135.84  Aligned_cols=107  Identities=23%  Similarity=0.229  Sum_probs=95.2

Q ss_pred             CCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCc
Q 003296           10 LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNA   89 (833)
Q Consensus        10 L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~   89 (833)
                      -+.+++++|.++.+|. .-.++|++|+|++|+|+++.+..|.++++|++|+|++|+|+++++..|..+++|++|+|++|+
T Consensus        14 ~~~l~~~~n~l~~iP~-~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPA-GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SSEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CcEEEeCCCCCCccCC-CcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            4789999999999986 224889999999999999999999999999999999999998888888999999999999999


Q ss_pred             CcccCCccccCCCCCCEEeccCCcCCcc
Q 003296           90 FHGEIPKGIADYRNLTLIDLSANNLSGS  117 (833)
Q Consensus        90 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  117 (833)
                      |+++.+..|..+++|++|+|++|.+...
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             cceeCHHHhccccCCCEEEeCCCCcccc
Confidence            9987777799999999999999998743

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.48  E-value=2.1e-12  Score=142.15  Aligned_cols=314  Identities=12%  Similarity=0.130  Sum_probs=178.4

Q ss_pred             cccCCC-CCCEEECCCCCCCCcccccccCCCCCCEEeCcCCc---CCCCCCcccCCCCCCCEEEccCCcCcccCCccccC
Q 003296           25 TFNGFA-GLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNK---FNGFLPINLGKTKALEELVLSGNAFHGEIPKGIAD  100 (833)
Q Consensus        25 ~f~~l~-~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~---l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  100 (833)
                      +|.++. .|+.+.+..+ ++.|...+|.++.+|+.+.++.|.   ++.+...+|.++.+|+.+.+..+ ++.+...+|.+
T Consensus        58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~  135 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH  135 (394)
T ss_dssp             TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred             hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence            466653 4777777643 666667777777777777776653   55555667777777777766544 44455666777


Q ss_pred             CCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecc
Q 003296          101 YRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLS  180 (833)
Q Consensus       101 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls  180 (833)
                      +.+|+.+.+..+ +..+....|..+.+|+.+.+..+ ++.+-...|.. ..|+.+.+..+-                   
T Consensus       136 c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-------------------  193 (394)
T 4gt6_A          136 CEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-------------------  193 (394)
T ss_dssp             CTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-------------------
T ss_pred             hcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcc-------------------
Confidence            777777777644 44455666777777777777544 34333344432 334433332111                   


Q ss_pred             cccccccCCccCCCCCCCCEEecccccCcccCCC---------------CCCcCCcEEEcCCccccCCCCccccCCCCCC
Q 003296          181 YNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQ---------------NMSPNLVRLRLGTNLLIGEIPSATFTSLEKL  245 (833)
Q Consensus       181 ~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~---------------~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L  245 (833)
                          .......|..+..++......+.....-..               .....+..+.+..+  ...+...+|.++.+|
T Consensus       194 ----~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~--v~~i~~~aF~~c~~L  267 (394)
T 4gt6_A          194 ----TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG--VARIETHAFDSCAYL  267 (394)
T ss_dssp             ----CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT--EEEECTTTTTTCSSC
T ss_pred             ----cccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCc--ceEcccceeeecccc
Confidence                111112223333333333322221100000               00011222222221  123455678888888


Q ss_pred             CEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCC
Q 003296          246 TYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWN  325 (833)
Q Consensus       246 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  325 (833)
                      +.+.+.++. ..+...+|.++++|+.+.+. +.+.......|.++.+|+.+++..+ ++.+...+|.++.+|+.+.+..+
T Consensus       268 ~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s  344 (394)
T 4gt6_A          268 ASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS  344 (394)
T ss_dssp             CEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT
T ss_pred             cEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc
Confidence            888886554 33566778888888888885 4455455567788888888888653 66566677888888888888654


Q ss_pred             cCcccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcC
Q 003296          326 SLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQL  375 (833)
Q Consensus       326 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  375 (833)
                       ++.+-..+|.++++|+.+++.+|....   ..|....+|+.+.+..|.+
T Consensus       345 -v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          345 -VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             -CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             -cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence             665666788888888888888776432   4566777788877766644

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.44  E-value=8.4e-16  Score=151.91  Aligned_cols=165  Identities=22%  Similarity=0.302  Sum_probs=112.5

Q ss_pred             cCCCCCCCEEECCCCCCCCCCCc------cccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhc
Q 003296          239 FTSLEKLTYLELDNNSFTGMIPQ------QLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFS  312 (833)
Q Consensus       239 f~~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  312 (833)
                      |.....++.++++.|.+++..|.      .+..+++|++|+|++|.+.+ +| .+..+++|+.|++++|.++ .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            34455666777777777776665      77788888888888888876 55 6777788888888888887 4566666


Q ss_pred             CCCcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccC-ccccCCCCCCEEEccCCcCCccCCCCcccccceee
Q 003296          313 QLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIP-NSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALN  391 (833)
Q Consensus       313 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~  391 (833)
                      .+++|++|++++|.+++ +| .+..+++|+.|+|++|++++..+ ..+..+++|++|++++|++.+.+|..         
T Consensus        91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~---------  159 (198)
T 1ds9_A           91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN---------  159 (198)
T ss_dssp             HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT---------
T ss_pred             cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccc---------
Confidence            77788888888888875 34 57777888888888888875433 46777888888888888776543321         


Q ss_pred             ccccccccchhhhhccCCCCCEEecccCcCc
Q 003296          392 LSSNLFEGPIPTTFARLNGLEVLDLSNNRFS  422 (833)
Q Consensus       392 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  422 (833)
                         +.........+..+++|+.||  +|.++
T Consensus       160 ---~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          160 ---NATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             ---TTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             ---cchHHHHHHHHHhCCCcEEEC--CcccC
Confidence               111111223456667777665  45554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.43  E-value=3.1e-15  Score=147.83  Aligned_cols=156  Identities=20%  Similarity=0.292  Sum_probs=98.2

Q ss_pred             ccCCCCCcEEEccCCccCCCChh------hhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccc
Q 003296          263 LGSCRSLTLLNLAQNELNGSLPI------QLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLS  336 (833)
Q Consensus       263 ~~~l~~L~~L~L~~N~l~~~~p~------~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  336 (833)
                      +.....++.++++.+.+.+..|.      .+..+++|+.|++++|.+++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            44456666667777777666554      55666666666666666654 34 5555666666666666665 3455555


Q ss_pred             cCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCccCCCCcccccceeeccccccccchh-hhhccCCCCCEEe
Q 003296          337 NLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIP-TTFARLNGLEVLD  415 (833)
Q Consensus       337 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~  415 (833)
                      .+++|+.|+|++|++++ +| .+..+++|+.|++++|+++                      +..+ ..+..+++|+.|+
T Consensus        91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~----------------------~~~~~~~l~~l~~L~~L~  146 (198)
T 1ds9_A           91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKIT----------------------NWGEIDKLAALDKLEDLL  146 (198)
T ss_dssp             HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECC----------------------CHHHHHHHTTTTTCSEEE
T ss_pred             cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCC----------------------chhHHHHHhcCCCCCEEE
Confidence            55566666666666654 22 4555555555555555543                      3222 4677888999999


Q ss_pred             cccCcCccccch----------hccCCCCCCeeeCcCCcccc
Q 003296          416 LSNNRFSGEIPQ----------LLAQMPTLTQLLLTNNQLSG  447 (833)
Q Consensus       416 Ls~N~l~~~~p~----------~~~~l~~L~~L~ls~N~l~~  447 (833)
                      +++|.+++.+|.          .+..+++|+.||  +|.++.
T Consensus       147 l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             ECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             ecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            999999877665          377888898887  566543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.42  E-value=1.7e-13  Score=148.19  Aligned_cols=104  Identities=25%  Similarity=0.197  Sum_probs=75.5

Q ss_pred             CEEECCCC-CCCCcccccCCCCCCEEECCC-CCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCC
Q 003296           11 KLLNFSKN-ELVSLPTFNGFAGLEVLDFSS-NNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGN   88 (833)
Q Consensus        11 ~~L~ls~N-~l~~i~~f~~l~~L~~L~Ls~-N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N   88 (833)
                      +.++++++ .|+.||.+..+++|+.|+|++ |+|+++.+..|.+|++|++|+|++|+|++++|..|.++++|++|+|++|
T Consensus        11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            34677777 777777666677777777775 7777777777777777777777777777777777777777777777777


Q ss_pred             cCcccCCccccCCCCCCEEeccCCcCC
Q 003296           89 AFHGEIPKGIADYRNLTLIDLSANNLS  115 (833)
Q Consensus        89 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~  115 (833)
                      +|+++.+..|..+. |+.|+|++|.+.
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            77766665665555 777777777665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.38  E-value=3.2e-11  Score=132.65  Aligned_cols=311  Identities=12%  Similarity=0.152  Sum_probs=211.0

Q ss_pred             CCCC-CCCCEEECCCCCCCCcc--cccCCCCCCEEECCCCC---CCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCC
Q 003296            4 CGGI-DGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNN---LNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKT   77 (833)
Q Consensus         4 ~~~l-~~L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~---l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l   77 (833)
                      +.++ ..|+.+.+..+ ++.|.  +|.++++|+.+.++.|.   ++.+...+|.++.+|+.+.+..+ ++.+...+|..+
T Consensus        59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c  136 (394)
T 4gt6_A           59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHC  136 (394)
T ss_dssp             TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTC
T ss_pred             ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhh
Confidence            4555 45999999865 77784  69999999999998874   78888899999999999988765 666788899999


Q ss_pred             CCCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCcccc
Q 003296           78 KALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAA  157 (833)
Q Consensus        78 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l  157 (833)
                      .+|+.+.+..+ +..+....|..+.+|+.+.+..+ ++.+...+|.+ .+|+.+.+..+ ++......|..+..+.....
T Consensus       137 ~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~  212 (394)
T 4gt6_A          137 EELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK-VTRIGTNAFSECFALSTITS  212 (394)
T ss_dssp             TTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             cccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc-ccccccchhhhccccceecc
Confidence            99999999855 45577889999999999999876 66677777865 67999998765 33455667777777766554


Q ss_pred             ccccccccCChhhh----------------hcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCc
Q 003296          158 NQNKFSGSVPGGIT----------------RFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLV  221 (833)
Q Consensus       158 ~~n~l~~~~p~~~~----------------~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~  221 (833)
                      ..+.... +...+.                ..+..+.+. +.+..+-...|..+.+|+.+.+.                 
T Consensus       213 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp-----------------  273 (394)
T 4gt6_A          213 DSESYPA-IDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMP-----------------  273 (394)
T ss_dssp             CCSSSCB-SSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECC-----------------
T ss_pred             ccccccc-ccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecc-----------------
Confidence            4333221 000000                001112211 11222223344444555555443                 


Q ss_pred             EEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCC
Q 003296          222 RLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLN  301 (833)
Q Consensus       222 ~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  301 (833)
                           .+.  ..+...+|.++++|+.+.+. +.++.+...+|.+|.+|+.++|..+ ++.+-..+|.++.+|+.+.+..+
T Consensus       274 -----~~~--~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s  344 (394)
T 4gt6_A          274 -----DSV--VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS  344 (394)
T ss_dssp             -----TTC--CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT
T ss_pred             -----ccc--ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc
Confidence                 332  13556778888889988886 5567677778888999999988764 55455677888889999888654


Q ss_pred             cCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCccc
Q 003296          302 KLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLN  352 (833)
Q Consensus       302 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  352 (833)
                       ++.+-..+|.++.+|+.+++.++....   ..|....+|+.+.+..|.+.
T Consensus       345 -v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~  391 (394)
T 4gt6_A          345 -VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSID  391 (394)
T ss_dssp             -CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----------
T ss_pred             -cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence             666677889999999999998876542   35667788888888776653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.35  E-value=2.1e-12  Score=139.57  Aligned_cols=105  Identities=20%  Similarity=0.206  Sum_probs=90.9

Q ss_pred             CEEECCCC-CCCCcccccccCCCCCCEEeCcC-CcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecc
Q 003296           33 EVLDFSSN-NLNGNINLQFDELVSLKSLNLSK-NKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLS  110 (833)
Q Consensus        33 ~~L~Ls~N-~l~~~~~~~f~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  110 (833)
                      ..++++++ +|+.+.+  |..+++|++|+|++ |+|+++++..|.++++|++|+|++|+|+++.|..|.++++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35688888 8887544  88999999999996 99998888889999999999999999999888899999999999999


Q ss_pred             CCcCCccCCccccCCCCCcEEECcCCcCCC
Q 003296          111 ANNLSGSVPDRIGELSKLEVLILSANNLDG  140 (833)
Q Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  140 (833)
                      +|+|+++.+..|..++ |+.|+|++|.|..
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            9999987777777776 9999999998875

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.24  E-value=1.8e-13  Score=148.49  Aligned_cols=133  Identities=17%  Similarity=0.242  Sum_probs=84.4

Q ss_pred             CCCCEEECCCCCCCCcc--c----cc-CCCCCCEEECCCCCCCCccccc-ccCCCCCCEEeCcCCcCCCCCCccc-----
Q 003296            8 DGLKLLNFSKNELVSLP--T----FN-GFAGLEVLDFSSNNLNGNINLQ-FDELVSLKSLNLSKNKFNGFLPINL-----   74 (833)
Q Consensus         8 ~~L~~L~ls~N~l~~i~--~----f~-~l~~L~~L~Ls~N~l~~~~~~~-f~~l~~L~~L~Ls~N~l~~~~p~~~-----   74 (833)
                      +.|+.|+|++|.|+...  .    +. ..++|+.|||++|.|+...... +..+++|++|+|++|.|+......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            56778888888877532  1    12 2357888888888776432222 2345677888888887764333333     


Q ss_pred             CCCCCCCEEEccCCcCccc----CCccccCCCCCCEEeccCCcCCcc----CCccccCCCCCcEEECcCCcCCC
Q 003296           75 GKTKALEELVLSGNAFHGE----IPKGIADYRNLTLIDLSANNLSGS----VPDRIGELSKLEVLILSANNLDG  140 (833)
Q Consensus        75 ~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~  140 (833)
                      ...++|++|+|++|.|+..    ++..+..+++|++|+|++|.|+..    ++..+...++|++|+|++|.|+.
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            3456778888888877542    334446677777888887777642    24455666777777777777764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.22  E-value=5.5e-13  Score=144.77  Aligned_cols=170  Identities=24%  Similarity=0.239  Sum_probs=91.8

Q ss_pred             CCCCCEEECCCCCCCCCCCccccC-----CCCCcEEEccCCccCCCChhhh-CCCCCCcEEEccCCcCCCcCchhh----
Q 003296          242 LEKLTYLELDNNSFTGMIPQQLGS-----CRSLTLLNLAQNELNGSLPIQL-GSLGILQVMNLQLNKLSGEIPSQF----  311 (833)
Q Consensus       242 l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~~----  311 (833)
                      +++|+.|+|++|.++......+..     .++|+.|+|++|.+.......+ ..+.+|+.|+|++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            356778888888876543333322     2577777777777653222222 234456677777776664433333    


Q ss_pred             -cCCCcCceeeccCCcCccc----CccccccCCCCCEEEccCCccccc----cCccccCCCCCCEEEccCCcCCccCCCC
Q 003296          312 -SQLKLLSTMNISWNSLSGS----IPSFLSNLTNLVNLNLRQNNLNGS----IPNSITNMRSLIELQLGGNQLSGTIPMM  382 (833)
Q Consensus       312 -~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~  382 (833)
                       ...++|++|+|++|.++..    ++..+...++|++|+|++|.|+..    ++..+...++|++|+|++|.|+..-.  
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~--  228 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA--  228 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH--
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH--
Confidence             2345566666666666532    233344556666666666666532    23444555566666666665542100  


Q ss_pred             cccccceeeccccccccchhhhhccCCCCCEEecccCcCccccchhc
Q 003296          383 PPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLL  429 (833)
Q Consensus       383 ~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  429 (833)
                                      ..++..+...++|++|||++|.|+..-...+
T Consensus       229 ----------------~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          229 ----------------LALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             ----------------HHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             ----------------HHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence                            0123344455666666666666654443333

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.21  E-value=7.6e-10  Score=120.99  Aligned_cols=127  Identities=6%  Similarity=0.013  Sum_probs=77.7

Q ss_pred             ccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCC
Q 003296           24 PTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRN  103 (833)
Q Consensus        24 ~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  103 (833)
                      |.|....+|+.+.+.. .++.|...+|.++.+|+.++|..+ ++.+...+|.++ +|+.+.+..+ ++.+...+|... +
T Consensus        40 ~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~  114 (379)
T 4h09_A           40 PWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-D  114 (379)
T ss_dssp             TTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-C
T ss_pred             cccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-C
Confidence            3455566777777764 466677777888888888888643 666667777776 5777777644 554555666654 6


Q ss_pred             CCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccc
Q 003296          104 LTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAAN  158 (833)
Q Consensus       104 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~  158 (833)
                      |+.+++..+ +..+....|.+. +|+.+.+..+ ++.+....|.....++.....
T Consensus       115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~  166 (379)
T 4h09_A          115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVS  166 (379)
T ss_dssp             CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEEC
T ss_pred             cccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccc
Confidence            777777655 343455556554 4555554432 444445555555555554443

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.20  E-value=2.3e-11  Score=125.77  Aligned_cols=144  Identities=16%  Similarity=0.049  Sum_probs=110.7

Q ss_pred             HHhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~~~~l  632 (833)
                      -..|......+.|+.+.||++... |+.+++|+.....    ......+.+|+++++.+. |..+.++++++...+..|+
T Consensus        13 l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~----~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~l   87 (263)
T 3tm0_A           13 IEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRY----KGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNL   87 (263)
T ss_dssp             HTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGG----TTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEE
T ss_pred             hccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCccc----CCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEE
Confidence            345766778888899999999864 7899999984211    122356999999999985 6778889999998889999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCC-----------------------------------
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFT-----------------------------------  677 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~-----------------------------------  677 (833)
                      ||||++|.+|.+.+..       ......++.+++++++.||...                                   
T Consensus        88 v~e~i~G~~l~~~~~~-------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (263)
T 3tm0_A           88 LMSEADGVLCSEEYED-------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEE  160 (263)
T ss_dssp             EEECCSSEEHHHHCCT-------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGST
T ss_pred             EEEecCCeehhhccCC-------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccc
Confidence            9999999999876421       1123467889999999999610                                   


Q ss_pred             ---------------------CCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          678 ---------------------SNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       678 ---------------------~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                                           ...++|+|++|.||+++++..+.|.||+.+..
T Consensus       161 ~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T 3tm0_A          161 DTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             TCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             cccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence                                 14589999999999998765667999986643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.16  E-value=2.6e-09  Score=116.74  Aligned_cols=310  Identities=13%  Similarity=0.122  Sum_probs=186.8

Q ss_pred             CCCCCEEECCCCCCCCcc--cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEE
Q 003296            7 IDGLKLLNFSKNELVSLP--TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELV   84 (833)
Q Consensus         7 l~~L~~L~ls~N~l~~i~--~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~   84 (833)
                      .++|+.+.+.. .++.|+  +|.++.+|+.++|..+ ++.+...+|.++ +|+.+.+..+ ++.+...+|... +|+.+.
T Consensus        45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~  119 (379)
T 4h09_A           45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFE  119 (379)
T ss_dssp             GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEE
T ss_pred             ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cccccc
Confidence            45677777764 466674  6999999999999754 888899999998 6888888654 666777888775 799999


Q ss_pred             ccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccc
Q 003296           85 LSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSG  164 (833)
Q Consensus        85 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~  164 (833)
                      +..+ ++.+....|.+. +|+.+.+..+ ++.+....|.+..+++...+..+.........+. .......       ..
T Consensus       120 lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~  188 (379)
T 4h09_A          120 FPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-YNKNKTI-------LE  188 (379)
T ss_dssp             CCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-EETTSSE-------EE
T ss_pred             CCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccccee-cccccce-------ec
Confidence            9876 444556667665 6777776654 6667788899999999998876654321111000 0000000       00


Q ss_pred             cCChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCC
Q 003296          165 SVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEK  244 (833)
Q Consensus       165 ~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~  244 (833)
                      ..+.  ...+..+.+... ........+....+|+.+.+..+-                        ..+....|.++.+
T Consensus       189 ~~~~--~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~~------------------------~~i~~~~f~~~~~  241 (379)
T 4h09_A          189 SYPA--AKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSGV------------------------TTLGDGAFYGMKA  241 (379)
T ss_dssp             ECCT--TCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTTC------------------------CEECTTTTTTCSS
T ss_pred             cccc--cccccccccccc-eeEEeecccccccccceeeeccce------------------------eEEccccccCCcc
Confidence            0000  011222222211 111223334444555555543321                        1234455666666


Q ss_pred             CCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccC
Q 003296          245 LTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISW  324 (833)
Q Consensus       245 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  324 (833)
                      |+.+.+..+ ++.+...+|.++.+|+.+.+..+ +.......|.++.+|+.+.+.++.++.+....|.++.+|+.+.|..
T Consensus       242 L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~  319 (379)
T 4h09_A          242 LDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT  319 (379)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred             ceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence            666666554 55555566666667776666543 3334445566667777777766666666666777777777777754


Q ss_pred             CcCcccCccccccCCCCCEEEccCCccccccCccccCCC
Q 003296          325 NSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMR  363 (833)
Q Consensus       325 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  363 (833)
                      + ++.+-..+|.++++|+.+.+..+ ++.+-..+|.++.
T Consensus       320 ~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          320 A-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             T-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             c-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            3 55455566777777777777544 5545555666554

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.14  E-value=9.4e-11  Score=120.97  Aligned_cols=132  Identities=15%  Similarity=0.108  Sum_probs=99.0

Q ss_pred             cccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCc--ccceEEEecCCceEEEEeeCC
Q 003296          561 NVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNV--MTPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~ni--v~~~~~~~~~~~~~lv~ey~~  638 (833)
                      .+.+.|..+.||++...+|..+++|.....       ....+.+|+++++.+++.++  .++++++..++..++||||++
T Consensus        26 ~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~-------~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~   98 (264)
T 1nd4_A           26 QQTIGCSDAAVFRLSAQGRPVLFVKTDLSG-------ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVP   98 (264)
T ss_dssp             ECSCTTSSCEEEEEECTTSCCEEEEEECSC-------TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCS
T ss_pred             ecccCCCCceEEEEecCCCCeEEEEeCCcc-------cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecC
Confidence            333466679999998878889999997321       22568899999999965554  458888888888999999999


Q ss_pred             CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCC-----------------------------------------
Q 003296          639 KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFT-----------------------------------------  677 (833)
Q Consensus       639 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~-----------------------------------------  677 (833)
                      |.++.  ...     .+   ...++.++++.++.||...                                         
T Consensus        99 G~~l~--~~~-----~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (264)
T 1nd4_A           99 GQDLL--SSH-----LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPA  168 (264)
T ss_dssp             SEETT--TSC-----CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHH
T ss_pred             CcccC--cCc-----CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHH
Confidence            98884  221     12   2356778888888888532                                         


Q ss_pred             --------------CCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          678 --------------SNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       678 --------------~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                                    ...++|+|++|.||+++.++.+++.|||.+..
T Consensus       169 ~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~  214 (264)
T 1nd4_A          169 ELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV  214 (264)
T ss_dssp             HHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             HHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence                          11299999999999998776677999987654

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=99.00  E-value=1.1e-09  Score=118.73  Aligned_cols=144  Identities=19%  Similarity=0.239  Sum_probs=107.2

Q ss_pred             ccccccCcccEEEEEEcCCCceEEEEEccc-cchhhhccChhHHHHHHHHHhcCC--CCCcccceEEEecC---CceEEE
Q 003296          560 LNVELKTRFSTYYKAVMPSGMSYFIKKLNW-SDKIFQLGSHHKFDKELEVLGKLS--NSNVMTPLAYVLAS---DSAYLF  633 (833)
Q Consensus       560 ~~~ig~g~~g~vy~~~~~~~~~vavK~~~~-~~~~~~~~~~~~~~~E~~~l~~l~--H~niv~~~~~~~~~---~~~~lv  633 (833)
                      .+.++.|.++.||+....+ ..+++|+... ....  ......+.+|+++++.++  +..+.++++++.+.   +..|+|
T Consensus        43 ~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~--~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~v  119 (359)
T 3dxp_A           43 VEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKL--LPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYI  119 (359)
T ss_dssp             EEECCC-CCSCEEEEECSS-CEEEEECCCC------------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEE
T ss_pred             EEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCC--CCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEE
Confidence            4568899999999998754 6788888730 1111  112357889999999997  45578888888776   458999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCC------------------------------------
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFT------------------------------------  677 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~------------------------------------  677 (833)
                      |||++|..+.+..    ...++..++..++.++++.|+.||...                                    
T Consensus       120 me~v~G~~l~~~~----~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (359)
T 3dxp_A          120 MEFVSGRVLWDQS----LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIP  195 (359)
T ss_dssp             EECCCCBCCCCTT----CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCH
T ss_pred             EEecCCeecCCCc----cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCCh
Confidence            9999998875422    124778888999999999999999621                                    


Q ss_pred             -------------------CCCeeecCCCccceeeCCCCC--ceeccceeeeee
Q 003296          678 -------------------SNPILLLDLSTRNIFLKSLKE--PQIGDIELCKVI  710 (833)
Q Consensus       678 -------------------~~~iiHrdlk~~Nill~~~~~--~ki~dfgl~~~~  710 (833)
                                         ...++|+|++|.||+++.++.  +.|.||+.+...
T Consensus       196 ~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~g  249 (359)
T 3dxp_A          196 AMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTLG  249 (359)
T ss_dssp             HHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEEE
T ss_pred             HHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECccccccC
Confidence                               256999999999999987653  589999988764

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.86  E-value=9.4e-10  Score=116.21  Aligned_cols=188  Identities=15%  Similarity=0.118  Sum_probs=122.3

Q ss_pred             ccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCc--ccceEEEecCC---ceEEE
Q 003296          560 LNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNV--MTPLAYVLASD---SAYLF  633 (833)
Q Consensus       560 ~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~ni--v~~~~~~~~~~---~~~lv  633 (833)
                      .+.++.|....||+..    ..+++|+-. ..     .....+.+|+++|+.+. +..+  .+.+++....+   ..|+|
T Consensus        25 i~~~~~G~~n~v~~v~----~~~vlR~~~-~~-----~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~v   94 (304)
T 3sg8_A           25 IEISGEGNDCIAYEIN----RDFIFKFPK-HS-----RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAG   94 (304)
T ss_dssp             CCEEEECSSEEEEEST----TSEEEEEES-SH-----HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEE
T ss_pred             eEecCCCCcceEEEEC----CEEEEEecC-Cc-----chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEE
Confidence            3568899999999873    578999863 21     12357899999999884 3333  33444433332   35899


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcC-------------------------------------
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGF-------------------------------------  676 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~-------------------------------------  676 (833)
                      |||++|.++.+....    .++..++..++.++++.++.||..                                     
T Consensus        95 m~~i~G~~l~~~~~~----~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (304)
T 3sg8_A           95 FTKIKGVPLTPLLLN----NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQM  170 (304)
T ss_dssp             EECCCCEECCHHHHH----TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHH
T ss_pred             EcccCCeECCccccc----cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccH
Confidence            999999888754321    367777788888888888888851                                     


Q ss_pred             ------------------CCCCeeecCCCccceeeCC--CCCceeccceeeeeeCCCCCCCcccc------------ccc
Q 003296          677 ------------------TSNPILLLDLSTRNIFLKS--LKEPQIGDIELCKVIDPSKSTGSLST------------VAG  724 (833)
Q Consensus       677 ------------------~~~~iiHrdlk~~Nill~~--~~~~ki~dfgl~~~~~~~~~~~~~~~------------~~g  724 (833)
                                        ....++|+|++|.||++++  ...+.+.||+.+....+...-.....            +..
T Consensus       171 ~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~  250 (304)
T 3sg8_A          171 KKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILN  250 (304)
T ss_dssp             HHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHH
Confidence                              1135899999999999997  45678999999876543210000000            000


Q ss_pred             cccccc-cccccCCcccccCcchhhHHHHHHHHhCCCccc
Q 003296          725 SVGYIP-PEYAYTMRVTMAGNVYSFGVILLELLTGKTAVN  763 (833)
Q Consensus       725 t~~y~a-PE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~  763 (833)
                      ..++.. |+...  +.....+.|++|+++|++.+|+.+|.
T Consensus       251 ~Y~~~~~~~~~~--r~~~~~~~~~l~~~~~~~~~g~~~~~  288 (304)
T 3sg8_A          251 HYKHKDIPTVLE--KYRMKEKYWSFEKIIYGKEYGYMDWY  288 (304)
T ss_dssp             HHTCSCHHHHHH--HHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HcCCCCcHHHHH--HHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            011112 22211  11223578999999999999998874

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.69  E-value=2.3e-09  Score=115.18  Aligned_cols=176  Identities=14%  Similarity=0.175  Sum_probs=101.7

Q ss_pred             ccCCCCCCEEECCCCCCC---------CcccccccCCCCCCEEeCcCCc-CCCCCCcccCCCCCCCEEEccCCcCcccCC
Q 003296           26 FNGFAGLEVLDFSSNNLN---------GNINLQFDELVSLKSLNLSKNK-FNGFLPINLGKTKALEELVLSGNAFHGEIP   95 (833)
Q Consensus        26 f~~l~~L~~L~Ls~N~l~---------~~~~~~f~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p   95 (833)
                      ...+++|+.|.+..+...         +.....+..+++|+.|+|++|. ++ +.+  + .+++|+.|+|..|.+.....
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~--~-~~~~L~~L~L~~~~l~~~~l  210 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK--K-PRPNLKSLEIISGGLPDSVV  210 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS--C-BCTTCSEEEEECSBCCHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc--c-cCCCCcEEEEecCCCChHHH
Confidence            345667777777655331         1122345667788888887773 32 222  3 26778888888777654333


Q ss_pred             cccc--CCCCCCEEeccC--CcCCcc-----CCccc--cCCCCCcEEECcCCcCCCCCCcccc---cCCccCcccccccc
Q 003296           96 KGIA--DYRNLTLIDLSA--NNLSGS-----VPDRI--GELSKLEVLILSANNLDGRLPTSLA---SITTLSRFAANQNK  161 (833)
Q Consensus        96 ~~~~--~l~~L~~L~Ls~--N~l~~~-----~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~l~l~~n~  161 (833)
                      ..+.  .+++|+.|+|+.  |...+.     +...+  ..+++|++|+|++|.++...+..+.   .+++|+.|+++.|.
T Consensus       211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~  290 (362)
T 2ra8_A          211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV  290 (362)
T ss_dssp             HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred             HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence            3333  677888888753  221111     11122  2467888888888877643333332   46778888888888


Q ss_pred             cccc----CChh--hhhcCCEEecccccccccCCccCCC-CCCCCEEeccccc
Q 003296          162 FSGS----VPGG--ITRFLRNLDLSYNKLLGVIPIDLLS-HPNLQTIDLSVNM  207 (833)
Q Consensus       162 l~~~----~p~~--~~~~L~~L~Ls~N~l~~~~~~~~~~-~~~L~~L~Ls~N~  207 (833)
                      +.+.    ++..  ..++|+.|+|++|.+....-..+.. +  ...++++.+.
T Consensus       291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          291 LTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             CBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            7653    2222  2456888888888775432222221 1  3457888776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.61  E-value=1.5e-08  Score=108.80  Aligned_cols=104  Identities=22%  Similarity=0.282  Sum_probs=68.3

Q ss_pred             CCCCCEEECCCCCCCC-c-------ccccccCCCCCCEEeCcCCcCCC---------CCCcccCCCCCCCEEEccCCcCc
Q 003296           29 FAGLEVLDFSSNNLNG-N-------INLQFDELVSLKSLNLSKNKFNG---------FLPINLGKTKALEELVLSGNAFH   91 (833)
Q Consensus        29 l~~L~~L~Ls~N~l~~-~-------~~~~f~~l~~L~~L~Ls~N~l~~---------~~p~~~~~l~~L~~L~L~~N~l~   91 (833)
                      ++.++.|.+......+ .       ...+...+++|+.|.+..+....         .++..+..+++|++|+|++|.-.
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence            3457788887665442 1       12235567899999997764321         12334567789999999988411


Q ss_pred             ccCCccccCCCCCCEEeccCCcCCccCCcccc--CCCCCcEEECcC
Q 003296           92 GEIPKGIADYRNLTLIDLSANNLSGSVPDRIG--ELSKLEVLILSA  135 (833)
Q Consensus        92 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~  135 (833)
                       ..+. +. +++|+.|+|..|.+.......+.  .+++|++|+|+.
T Consensus       186 -~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~  228 (362)
T 2ra8_A          186 -SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV  228 (362)
T ss_dssp             -BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred             -eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence             2222 43 88999999999887643333443  789999999864

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.53  E-value=6.3e-09  Score=105.88  Aligned_cols=62  Identities=29%  Similarity=0.392  Sum_probs=25.2

Q ss_pred             CCCCCEEEccCCcCcc--cCCccccCCCCCCEEeccCCcCCccCCccccCCC--CCcEEECcCCcCCC
Q 003296           77 TKALEELVLSGNAFHG--EIPKGIADYRNLTLIDLSANNLSGSVPDRIGELS--KLEVLILSANNLDG  140 (833)
Q Consensus        77 l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~  140 (833)
                      +++|++|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  +|++|+|++|.+.+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence            3344444444444443  1223333444444444444444432  1122222  44455555554444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.49  E-value=1.3e-08  Score=103.48  Aligned_cols=96  Identities=25%  Similarity=0.292  Sum_probs=54.8

Q ss_pred             EECCCCCCC---CcccccccCCCCCCEEeCcCCcCCCCC--CcccCCCCCCCEEEccCCcCcccCCccccCCC--CCCEE
Q 003296           35 LDFSSNNLN---GNINLQFDELVSLKSLNLSKNKFNGFL--PINLGKTKALEELVLSGNAFHGEIPKGIADYR--NLTLI  107 (833)
Q Consensus        35 L~Ls~N~l~---~~~~~~f~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~--~L~~L  107 (833)
                      ++++.|+..   +..+....++++|+.|+|++|+|+++.  |..+..+++|+.|+|++|+|++.  ..+..+.  +|+.|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            555666332   222223345666667777777666532  34455666677777777766654  2233333  67777


Q ss_pred             eccCCcCCccCC-------ccccCCCCCcEEE
Q 003296          108 DLSANNLSGSVP-------DRIGELSKLEVLI  132 (833)
Q Consensus       108 ~Ls~N~l~~~~~-------~~~~~l~~L~~L~  132 (833)
                      +|++|.+.+..|       ..+..+++|+.||
T Consensus       226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            777777765444       2356677777775

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.44  E-value=2.7e-08  Score=96.31  Aligned_cols=114  Identities=13%  Similarity=0.151  Sum_probs=63.3

Q ss_pred             ccCCCCCCEEECCCC-CCCCc----ccccccCCCCCCEEeCcCCcCCCC----CCcccCCCCCCCEEEccCCcCccc---
Q 003296           26 FNGFAGLEVLDFSSN-NLNGN----INLQFDELVSLKSLNLSKNKFNGF----LPINLGKTKALEELVLSGNAFHGE---   93 (833)
Q Consensus        26 f~~l~~L~~L~Ls~N-~l~~~----~~~~f~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~---   93 (833)
                      +...+.|++|+|++| .|...    ....+...++|++|+|++|.|...    +...+...+.|++|+|++|.|...   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            455666777777777 66531    223345566677777777766531    122334445666666666666532   


Q ss_pred             -CCccccCCCCCCEEec--cCCcCCcc----CCccccCCCCCcEEECcCCcCC
Q 003296           94 -IPKGIADYRNLTLIDL--SANNLSGS----VPDRIGELSKLEVLILSANNLD  139 (833)
Q Consensus        94 -~p~~~~~l~~L~~L~L--s~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~  139 (833)
                       +...+...+.|+.|+|  ++|.|...    +...+...++|++|+|++|.+.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence             2344555566666666  56666532    2233344456666666666553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.39  E-value=5.9e-08  Score=93.91  Aligned_cols=111  Identities=16%  Similarity=0.160  Sum_probs=88.3

Q ss_pred             CCCCCCCEEECCCC-CCCC--c----ccccCCCCCCEEECCCCCCCCc----ccccccCCCCCCEEeCcCCcCCCC----
Q 003296            5 GGIDGLKLLNFSKN-ELVS--L----PTFNGFAGLEVLDFSSNNLNGN----INLQFDELVSLKSLNLSKNKFNGF----   69 (833)
Q Consensus         5 ~~l~~L~~L~ls~N-~l~~--i----~~f~~l~~L~~L~Ls~N~l~~~----~~~~f~~l~~L~~L~Ls~N~l~~~----   69 (833)
                      ...+.|+.|+|++| .|..  +    ..+...++|++|||++|+|...    +...+...++|++|+|++|.|+..    
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            45788999999999 9875  2    2466788999999999999742    233456678999999999999853    


Q ss_pred             CCcccCCCCCCCEEEc--cCCcCccc----CCccccCCCCCCEEeccCCcCC
Q 003296           70 LPINLGKTKALEELVL--SGNAFHGE----IPKGIADYRNLTLIDLSANNLS  115 (833)
Q Consensus        70 ~p~~~~~l~~L~~L~L--~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~  115 (833)
                      +...+...+.|++|+|  ++|.|...    +...+...+.|+.|+|++|.|.
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            3456777889999999  88999753    3345666789999999999885

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.33  E-value=2.8e-06  Score=89.36  Aligned_cols=137  Identities=13%  Similarity=0.068  Sum_probs=92.6

Q ss_pred             ccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCC---CcccceEEEe-cCCceEEEEe
Q 003296          560 LNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS---NVMTPLAYVL-ASDSAYLFYE  635 (833)
Q Consensus       560 ~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~---niv~~~~~~~-~~~~~~lv~e  635 (833)
                      .+.++.|....||+.    |..++||+-. ..     .....+.+|+++|+.+.+.   .|.+.+.++. ..+..++|||
T Consensus        24 v~~l~~G~~n~v~~v----g~~~VlR~~~-~~-----~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e   93 (306)
T 3tdw_A           24 VESLGEGFRNYAILV----NGDWVFRFPK-SQ-----QGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYR   93 (306)
T ss_dssp             EEEEEECSSEEEEEE----TTTEEEEEES-SH-----HHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEE
T ss_pred             eeecCCCcceeEEEE----CCEEEEEecC-Cc-----hHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEe
Confidence            345778888899998    6788999852 11     1235789999999999753   2455566664 4556889999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcC---------------------------------------
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGF---------------------------------------  676 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~---------------------------------------  676 (833)
                      |++|..+.+..-.    .++..++..++.++++.|+.||..                                       
T Consensus        94 ~i~G~~l~~~~~~----~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~  169 (306)
T 3tdw_A           94 KVQGQILGEDGMA----VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLR  169 (306)
T ss_dssp             CCCSEECHHHHHT----TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHH
T ss_pred             ccCCeECchhhhh----hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhH
Confidence            9999888663211    133444444445555554444421                                       


Q ss_pred             ------------------CCCCeeecCCCccceeeCC---CCC-ceeccceeeeee
Q 003296          677 ------------------TSNPILLLDLSTRNIFLKS---LKE-PQIGDIELCKVI  710 (833)
Q Consensus       677 ------------------~~~~iiHrdlk~~Nill~~---~~~-~ki~dfgl~~~~  710 (833)
                                        ....++|+|++|.||+++.   ++. +.|.||+.+...
T Consensus       170 ~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~g  225 (306)
T 3tdw_A          170 DYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAIS  225 (306)
T ss_dssp             HHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEEE
T ss_pred             HHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCCC
Confidence                              1345799999999999987   355 479999987654

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.26  E-value=2.4e-06  Score=88.17  Aligned_cols=134  Identities=20%  Similarity=0.162  Sum_probs=93.2

Q ss_pred             cccCccc-EEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCCceEEEEeeCCC
Q 003296          563 ELKTRFS-TYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASDSAYLFYEYAPK  639 (833)
Q Consensus       563 ig~g~~g-~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~~~~lv~ey~~~  639 (833)
                      +..|..| .||+.... ++..+++|+-. ..      ....+.+|.++|+.+. +--|-++++++.+.+..++|||+++|
T Consensus        32 ~~~G~S~~~v~rl~~~~~~~~~~lk~~~-~~------~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G  104 (272)
T 4gkh_A           32 DNVGQSGATIYRLYGKPNAPELFLKHGK-GS------VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPG  104 (272)
T ss_dssp             EECSSSSCEEEEEECCTTCCCEEEEEEE-TH------HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCS
T ss_pred             ccCCCcCCeEEEEEecCCCeEEEEEECC-CC------CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCC
Confidence            3445554 69998764 56789999863 21      2356889999998885 32356678899888999999999999


Q ss_pred             CChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcC-------------------------------------------
Q 003296          640 GTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGF-------------------------------------------  676 (833)
Q Consensus       640 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~-------------------------------------------  676 (833)
                      .++.+.....      ...+..++.+++..|+-||..                                           
T Consensus       105 ~~~~~~~~~~------~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (272)
T 4gkh_A          105 KTAFQVLEEY------PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQ  178 (272)
T ss_dssp             EEHHHHHHHC------GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHH
T ss_pred             ccccccccCC------HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHH
Confidence            8877654321      112234455566666666632                                           


Q ss_pred             ------------CCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          677 ------------TSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       677 ------------~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                                  ....++|+|+.+.||+++.++.+-|.||+.+..
T Consensus       179 ~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~  223 (272)
T 4gkh_A          179 VWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI  223 (272)
T ss_dssp             HHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             HHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence                        012379999999999999877677889887654

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=98.11  E-value=6.2e-06  Score=88.86  Aligned_cols=83  Identities=8%  Similarity=-0.026  Sum_probs=56.1

Q ss_pred             ccc-ccCcccEEEEEEcC-------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-C--CCcccceEEEecC--
Q 003296          561 NVE-LKTRFSTYYKAVMP-------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-N--SNVMTPLAYVLAS--  627 (833)
Q Consensus       561 ~~i-g~g~~g~vy~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H--~niv~~~~~~~~~--  627 (833)
                      +.+ +.|....+|+....       +|..+++|+-. ............+.+|+++++.+. +  -.+.++++++.+.  
T Consensus        26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~-~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~  104 (357)
T 3ats_A           26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAP-AAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV  104 (357)
T ss_dssp             EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECC-CGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred             EECCCCCccceEEEEEEecccCCCCCCceEEEEeCC-CCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence            456 78888999998764       26788998863 211000111256889999998885 3  2466677877655  


Q ss_pred             -CceEEEEeeCCCCChhh
Q 003296          628 -DSAYLFYEYAPKGTLFD  644 (833)
Q Consensus       628 -~~~~lv~ey~~~g~L~~  644 (833)
                       +..++||||++|..+.+
T Consensus       105 ~g~~~~v~e~l~G~~l~~  122 (357)
T 3ats_A          105 LGTPFFLMDYVEGVVPPD  122 (357)
T ss_dssp             TSSCEEEEECCCCBCCCB
T ss_pred             cCCceEEEEecCCCChhh
Confidence             35789999999877654

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=97.91  E-value=4e-05  Score=83.77  Aligned_cols=79  Identities=9%  Similarity=-0.057  Sum_probs=51.2

Q ss_pred             ccccccCcccEEEEEEcC-CCceEEEEEccccch-hhh--ccChhHHHHHHHHHhcCCC--CCcc-cceEEEecCCceEE
Q 003296          560 LNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDK-IFQ--LGSHHKFDKELEVLGKLSN--SNVM-TPLAYVLASDSAYL  632 (833)
Q Consensus       560 ~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~-~~~--~~~~~~~~~E~~~l~~l~H--~niv-~~~~~~~~~~~~~l  632 (833)
                      .+.+|.|.++.||++... +++.|+||......+ ...  ......+.+|.++++.+..  |..| +++.+  +.+..++
T Consensus        35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l  112 (397)
T 2olc_A           35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT  112 (397)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred             EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence            457899999999999864 578999998742211 011  1234567889999988743  4444 34433  4556789


Q ss_pred             EEeeCCCC
Q 003296          633 FYEYAPKG  640 (833)
Q Consensus       633 v~ey~~~g  640 (833)
                      ||||+++.
T Consensus       113 vmE~l~g~  120 (397)
T 2olc_A          113 VMEDLSHL  120 (397)
T ss_dssp             EECCCTTS
T ss_pred             EEEeCCCc
Confidence            99999864

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=97.76  E-value=5.6e-05  Score=80.75  Aligned_cols=140  Identities=14%  Similarity=0.142  Sum_probs=80.1

Q ss_pred             cccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-----CCCcccce-E--EEecCCceEE
Q 003296          561 NVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-----NSNVMTPL-A--YVLASDSAYL  632 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-----H~niv~~~-~--~~~~~~~~~l  632 (833)
                      ..++.|..+.||+...++| .+++|+... .       ..+...|+++++.+.     .|.++... |  +....+..++
T Consensus        38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~-~-------~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~  108 (346)
T 2q83_A           38 DVIQGNQMALVWKVHTDSG-AVCLKRIHR-P-------EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFV  108 (346)
T ss_dssp             EECC----CEEEEEEETTE-EEEEEEECS-C-------HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEE
T ss_pred             eeccccccCcEEEEEeCCC-CEEEEecCC-C-------HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEE
Confidence            3455577899999987655 489999842 1       123444555555442     34444311 1  1234567899


Q ss_pred             EEeeCCCCChh--------------hhhhcCC-----C-------CCCCHHHHH--------------------------
Q 003296          633 FYEYAPKGTLF--------------DVLHGCL-----E-------NALDWASRY--------------------------  660 (833)
Q Consensus       633 v~ey~~~g~L~--------------~~l~~~~-----~-------~~l~~~~~~--------------------------  660 (833)
                      ||||++|..+.              ..+|...     .       ..-.|....                          
T Consensus       109 l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  188 (346)
T 2q83_A          109 VYDWIEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLY  188 (346)
T ss_dssp             EEECCCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             EEEeecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence            99999986542              1122110     0       012343211                          


Q ss_pred             -----HHHHHHHHHHHhhhc----------CCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          661 -----SIAVGVAQGLAFLHG----------FTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       661 -----~i~~~i~~~l~ylH~----------~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                           .+...+.+++++|+.          .....++|+|+++.||+++.++.+.+.||+.+..
T Consensus       189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~  252 (346)
T 2q83_A          189 LQEIDGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVSF  252 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhccc
Confidence                 011123345666652          0256799999999999998778899999997754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.60  E-value=9.7e-05  Score=66.25  Aligned_cols=56  Identities=27%  Similarity=0.312  Sum_probs=44.1

Q ss_pred             CEEECCCCCCC--CcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCC
Q 003296           11 KLLNFSKNELV--SLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFN   67 (833)
Q Consensus        11 ~~L~ls~N~l~--~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~   67 (833)
                      ..++++++.|+  .+|. .-.++|++|||++|+|+.+.+..|..+++|++|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47889999998  7885 23346888888888888888888888888888888888764

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=97.59  E-value=0.00025  Score=74.11  Aligned_cols=136  Identities=17%  Similarity=0.111  Sum_probs=91.3

Q ss_pred             cccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC---CCCcccceEEEecCCceEEEEeeC
Q 003296          561 NVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS---NSNVMTPLAYVLASDSAYLFYEYA  637 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~---H~niv~~~~~~~~~~~~~lv~ey~  637 (833)
                      +.++.|....+|+... ++..++||+-. ..      ....|.+|.+.|+.+.   ...+.++++++...+..++||||+
T Consensus        42 ~~l~gG~~n~~y~v~~-~~~~~vlK~~~-~~------~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l  113 (312)
T 3jr1_A           42 EKLYSGEMNEIWLIND-EVQTVFVKINE-RS------YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEAL  113 (312)
T ss_dssp             EEECCSSSSEEEEEES-SSCEEEEEEEE-GG------GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECC
T ss_pred             EEeCCccceeeeEEEE-CCCeEEEEeCC-cc------cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEec
Confidence            4678899999999986 56788899873 11      2467899999998884   356788888888888899999999


Q ss_pred             CCCChhh-----------hhhcCCC-C-------------------CCCHHHHH---HHH--H--------------HHH
Q 003296          638 PKGTLFD-----------VLHGCLE-N-------------------ALDWASRY---SIA--V--------------GVA  667 (833)
Q Consensus       638 ~~g~L~~-----------~l~~~~~-~-------------------~l~~~~~~---~i~--~--------------~i~  667 (833)
                      ++..+..           .||.... .                   .-+|....   ++.  .              .++
T Consensus       114 ~G~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~  193 (312)
T 3jr1_A          114 NKSKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIV  193 (312)
T ss_dssp             CCCCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHH
T ss_pred             cCCCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence            9976521           2333211 0                   12565432   111  1              111


Q ss_pred             HHH-Hhhhc-CCCCCeeecCCCccceeeCCCCCceeccce
Q 003296          668 QGL-AFLHG-FTSNPILLLDLSTRNIFLKSLKEPQIGDIE  705 (833)
Q Consensus       668 ~~l-~ylH~-~~~~~iiHrdlk~~Nill~~~~~~ki~dfg  705 (833)
                      ..+ ..|.. ...+.+||+|+.+.|++++.++ +.|.|+.
T Consensus       194 ~~l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~  232 (312)
T 3jr1_A          194 QIVADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA  232 (312)
T ss_dssp             HHHHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred             HHHHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence            112 23421 2256799999999999999876 7788873

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.54  E-value=1.7e-05  Score=74.69  Aligned_cols=84  Identities=7%  Similarity=0.096  Sum_probs=44.4

Q ss_pred             CCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCc-CcccCCccccCC----CCCCEEeccCCc-CCccCCccccCCCC
Q 003296           54 VSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNA-FHGEIPKGIADY----RNLTLIDLSANN-LSGSVPDRIGELSK  127 (833)
Q Consensus        54 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~~~~~~~l~~  127 (833)
                      .+|+.|||+++.|+..--..+.++++|++|+|++|. |+..--..++.+    ++|+.|+|++|. |+..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            356666666666554333345566666666666663 433222223333    246666666653 55322234555666


Q ss_pred             CcEEECcCCc
Q 003296          128 LEVLILSANN  137 (833)
Q Consensus       128 L~~L~Ls~N~  137 (833)
                      |++|+|+++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            7777666653

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=97.46  E-value=0.00073  Score=70.02  Aligned_cols=75  Identities=19%  Similarity=0.159  Sum_probs=53.7

Q ss_pred             ccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCC---CcccceEEEecCCceEEEEee
Q 003296          560 LNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS---NVMTPLAYVLASDSAYLFYEY  636 (833)
Q Consensus       560 ~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~---niv~~~~~~~~~~~~~lv~ey  636 (833)
                      .+.+|.|..+.||+.+..+|+.|+||+-...    .......|.+|++.|+.+.-.   -+.+++++    +.-++||||
T Consensus        20 v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~----~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~----~~~~lv~e~   91 (288)
T 3f7w_A           20 VAERGHSHRWHLYRVELADGTPLFVKALPDD----APALDGLFRAEALGLDWLGRSFGSPVPQVAGW----DDRTLAMEW   91 (288)
T ss_dssp             EEEEEEETTEEEEEEEETTSCEEEEEECCTT----CCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE----ETTEEEEEC
T ss_pred             EEecCCCCCeEEEEEEECCCCEEEEEEeCCC----CcchhhHHHHHHHHHHHHHhhCCCCcceEEec----cCceEEEEe
Confidence            4668999999999999999999999987321    122345689999999888422   23344443    234899999


Q ss_pred             CCCCCh
Q 003296          637 APKGTL  642 (833)
Q Consensus       637 ~~~g~L  642 (833)
                      ++++..
T Consensus        92 l~~~~~   97 (288)
T 3f7w_A           92 VDERPP   97 (288)
T ss_dssp             CCCCCC
T ss_pred             ecccCC
Confidence            987654

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=97.41  E-value=0.00058  Score=75.04  Aligned_cols=78  Identities=13%  Similarity=0.084  Sum_probs=49.2

Q ss_pred             CCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCccccccc--cccccccccccCC---cccccCcchhhHHHH
Q 003296          678 SNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAG--SVGYIPPEYAYTM---RVTMAGNVYSFGVIL  752 (833)
Q Consensus       678 ~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~g--t~~y~aPE~~~~~---~~~~~~Dv~S~Gvvl  752 (833)
                      ...++|+|++|.||+++.++ +++.||+.+....+...   .....+  ...|++|+.....   .-....++.+....+
T Consensus       231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~~D---la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (420)
T 2pyw_A          231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMGFD---IGAYLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQT  306 (420)
T ss_dssp             CCEEECSCCSGGGEEECSSC-EEECCCTTCEEECHHHH---HHHHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHH
T ss_pred             CCeEEecCCCCCcEEEeCCC-CEEEeCcccccCchHHH---HHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHH
Confidence            56799999999999998776 99999998876532211   011111  2346666654311   122334555777788


Q ss_pred             HHHHhCC
Q 003296          753 LELLTGK  759 (833)
Q Consensus       753 ~elltg~  759 (833)
                      |+..+++
T Consensus       307 ~~~y~~~  313 (420)
T 2pyw_A          307 WNLFNKR  313 (420)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8877653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.21  E-value=0.00021  Score=67.19  Aligned_cols=34  Identities=6%  Similarity=0.157  Sum_probs=14.1

Q ss_pred             CCCEEECCCCCCCCCCCccccCCCCCcEEEccCC
Q 003296          244 KLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQN  277 (833)
Q Consensus       244 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  277 (833)
                      +|+.||++++.++..--..+.+|++|+.|+|+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            3444444444444332223334444444444443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.99  E-value=0.00016  Score=69.23  Aligned_cols=63  Identities=8%  Similarity=0.057  Sum_probs=28.2

Q ss_pred             CCCCCEEECCCC-CCCC----cccccccCCCCCCEEeCcCCcCCCCC----CcccCCCCCCCEEEccCCcCc
Q 003296           29 FAGLEVLDFSSN-NLNG----NINLQFDELVSLKSLNLSKNKFNGFL----PINLGKTKALEELVLSGNAFH   91 (833)
Q Consensus        29 l~~L~~L~Ls~N-~l~~----~~~~~f~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~   91 (833)
                      -+.|+.|+|++| +|..    .+..++..-+.|+.|+|++|.|....    ...+...+.|++|+|++|.|.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            345555555553 4431    11223344455555555555554211    112223444555555555554

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=96.92  E-value=0.002  Score=68.21  Aligned_cols=34  Identities=12%  Similarity=0.079  Sum_probs=28.6

Q ss_pred             CCCeeecCCCccceeeCCC----CCceeccceeeeeeC
Q 003296          678 SNPILLLDLSTRNIFLKSL----KEPQIGDIELCKVID  711 (833)
Q Consensus       678 ~~~iiHrdlk~~Nill~~~----~~~ki~dfgl~~~~~  711 (833)
                      ...++|+|+.+.||+++.+    ..+.+.||+.+....
T Consensus       182 ~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G~  219 (333)
T 3csv_A          182 DMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLGH  219 (333)
T ss_dssp             CCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEEC
T ss_pred             CCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcCC
Confidence            4579999999999999874    678999999887654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.81  E-value=0.00034  Score=67.07  Aligned_cols=108  Identities=14%  Similarity=0.118  Sum_probs=70.7

Q ss_pred             CCCCCCEEECCCC-CCCC--c----ccccCCCCCCEEECCCCCCCCcc----cccccCCCCCCEEeCcCCcCCCCC----
Q 003296            6 GIDGLKLLNFSKN-ELVS--L----PTFNGFAGLEVLDFSSNNLNGNI----NLQFDELVSLKSLNLSKNKFNGFL----   70 (833)
Q Consensus         6 ~l~~L~~L~ls~N-~l~~--i----~~f~~l~~L~~L~Ls~N~l~~~~----~~~f~~l~~L~~L~Ls~N~l~~~~----   70 (833)
                      +-+.|+.|+|++| .|..  .    .++..-+.|+.|+|++|+|...-    ...+..-+.|++|+|++|.|...-    
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            4578999999996 8764  2    24566778999999999997432    334556689999999999997422    


Q ss_pred             CcccCCCCCCCEEEccCCcC---ccc----CCccccCCCCCCEEeccCCc
Q 003296           71 PINLGKTKALEELVLSGNAF---HGE----IPKGIADYRNLTLIDLSANN  113 (833)
Q Consensus        71 p~~~~~l~~L~~L~L~~N~l---~~~----~p~~~~~l~~L~~L~Ls~N~  113 (833)
                      -..+...+.|++|+|++|..   ...    +...+..-+.|+.|+++.|.
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            23455566688888875532   211    12233334455555555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.72  E-value=0.0024  Score=57.02  Aligned_cols=36  Identities=31%  Similarity=0.334  Sum_probs=20.2

Q ss_pred             CCCEEEccCCcCcccCCccccCCCCCCEEeccCCcC
Q 003296           79 ALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNL  114 (833)
Q Consensus        79 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  114 (833)
                      +|++|+|++|+|+.+.+..|..+++|+.|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            355555555555555555555555555566665554

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=96.62  E-value=0.0055  Score=63.74  Aligned_cols=139  Identities=14%  Similarity=0.021  Sum_probs=75.7

Q ss_pred             ccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcc-cceEEEecCCceEEEEeeC-
Q 003296          560 LNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVM-TPLAYVLASDSAYLFYEYA-  637 (833)
Q Consensus       560 ~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv-~~~~~~~~~~~~~lv~ey~-  637 (833)
                      .+.++.|....+|+.     ..+++|+-.....     ......+|+++++.+....+. +++++  +++.-++|+||+ 
T Consensus        23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~-----~~~~r~~E~~~l~~l~~~g~~P~~~~~--~~~~~~~v~e~i~   90 (301)
T 3dxq_A           23 PLERLGGLTNLVFRA-----GDLCLRIPGKGTE-----EYINRANEAVAAREAAKAGVSPEVLHV--DPATGVMVTRYIA   90 (301)
T ss_dssp             CEEEESCSSEEEEEE-----TTEEEEEECC---------CCCHHHHHHHHHHHHHTTSSCCEEEE--CTTTCCEEEECCT
T ss_pred             eeEcCCcccccccee-----eeEEEECCCCCcc-----ceeCHHHHHHHHHHHHHcCCCCceEEE--ECCCCEEEEeecC
Confidence            456788889999999     6788888732111     112235688888777533343 34433  444567899999 


Q ss_pred             CCCChhh------------------hhhcCCCC---CCC-HHHHHHHHHH--------------HHHHH----Hhhh-cC
Q 003296          638 PKGTLFD------------------VLHGCLEN---ALD-WASRYSIAVG--------------VAQGL----AFLH-GF  676 (833)
Q Consensus       638 ~~g~L~~------------------~l~~~~~~---~l~-~~~~~~i~~~--------------i~~~l----~ylH-~~  676 (833)
                      ++.++..                  .+|.....   ..+ +.....+...              +.+.+    +.+. ..
T Consensus        91 ~g~~l~~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~  170 (301)
T 3dxq_A           91 GAQTMSPEKFKTRPGSPARAGEAFRKLHGSGAVFPFRFELFAMIDDYLKVLSTKNVTLPAGYHDVVREAGGVRSALAAHP  170 (301)
T ss_dssp             TCEECCHHHHHHSTTHHHHHHHHHHHHHTSCCCCSSBCCHHHHHHHHHHHHC--CCCCCTTHHHHHHHHHHHHHHHHSSC
T ss_pred             CCccCCHhhHhhhHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhcC
Confidence            5544421                  11211100   011 1111111110              11111    1111 11


Q ss_pred             CCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          677 TSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       677 ~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      ....++|+|+.+.||+ ..++.+.+.||..+....
T Consensus       171 ~~~~l~HgDl~~~Nil-~~~~~~~lID~e~a~~g~  204 (301)
T 3dxq_A          171 LPLAACHCDPLCENFL-DTGERMWIVDWEYSGMND  204 (301)
T ss_dssp             CCCEEECSCCCGGGEE-ECSSCEEECCCTTCEEEC
T ss_pred             CCceeeccCCCcCCEE-ECCCCEEEEecccccCCC
Confidence            2345899999999999 556678999998877543

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=96.47  E-value=0.0039  Score=65.59  Aligned_cols=141  Identities=10%  Similarity=0.042  Sum_probs=78.8

Q ss_pred             ccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCC--cccceEE------EecCCceEEE
Q 003296          562 VELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSN--VMTPLAY------VLASDSAYLF  633 (833)
Q Consensus       562 ~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~n--iv~~~~~------~~~~~~~~lv  633 (833)
                      .++.|....+|+....+| .+++|.....      .....+..|+++++.+....  +.+++..      ....+..++|
T Consensus        29 ~i~~G~~n~~~~v~~~~g-~~vlk~~~~~------~~~~~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~~~~~~g~~~~l  101 (322)
T 2ppq_A           29 GIAEGVENSNFLLHTTKD-PLILTLYEKR------VEKNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGRPAAL  101 (322)
T ss_dssp             EECC---EEEEEEEESSC-CEEEEEECC---------CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEETTEEEEE
T ss_pred             ccCCCcccceEEEEeCCc-cEEEEEeCCC------CCHHHHHHHHHHHHHHHHCCCCCCcccCCCCCCEEEEECCEEEEE
Confidence            455677789999987655 6889988421      12345677888887764212  2223321      1224567899


Q ss_pred             EeeCCCCChhh--------------hhhcCC----CC------CCCHHHHHHH------------HHHHHHHHHhhhc--
Q 003296          634 YEYAPKGTLFD--------------VLHGCL----EN------ALDWASRYSI------------AVGVAQGLAFLHG--  675 (833)
Q Consensus       634 ~ey~~~g~L~~--------------~l~~~~----~~------~l~~~~~~~i------------~~~i~~~l~ylH~--  675 (833)
                      |||++|..+..              .+|...    ..      ...|.....-            ...+.+.+++++.  
T Consensus       102 ~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~  181 (322)
T 2ppq_A          102 ISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEIDYLAAHW  181 (322)
T ss_dssp             EECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHHHHHHHHHHHHC
T ss_pred             EEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhC
Confidence            99999865421              122110    00      0124331110            0113344455542  


Q ss_pred             --CCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          676 --FTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       676 --~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                        .....++|+|+.+.||+++.+..+.+.||+.+..
T Consensus       182 ~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~  217 (322)
T 2ppq_A          182 PKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACN  217 (322)
T ss_dssp             CCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             cccCCcccCCCCCCccCEEEeCCceEEEecchhccC
Confidence              1235689999999999998776567999987654

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=96.41  E-value=0.029  Score=58.96  Aligned_cols=141  Identities=11%  Similarity=0.031  Sum_probs=81.5

Q ss_pred             ccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCC--CcccceEE-----EecCCceEEEE
Q 003296          562 VELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS--NVMTPLAY-----VLASDSAYLFY  634 (833)
Q Consensus       562 ~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~--niv~~~~~-----~~~~~~~~lv~  634 (833)
                      .++ |....||+...++|+.+++|......     .....+..|.++++.+...  .+.+++..     ....+..++||
T Consensus        33 ~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~-----~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~  106 (328)
T 1zyl_A           33 PLN-SYENRVYQFQDEDRRRFVVKFYRPER-----WTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVF  106 (328)
T ss_dssp             EEC-CSSSEEEEECCTTCCCEEEEEECTTT-----SCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEE
T ss_pred             eec-CcccceEEEEcCCCCEEEEEEcCCCC-----CCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEE
Confidence            355 77889999888788889999984111     1245677788888777422  23444443     12245668899


Q ss_pred             eeCCCCChhh--------------hhhcC----C---CCCCCHHHH----H------------------HHHHHHHHHHH
Q 003296          635 EYAPKGTLFD--------------VLHGC----L---ENALDWASR----Y------------------SIAVGVAQGLA  671 (833)
Q Consensus       635 ey~~~g~L~~--------------~l~~~----~---~~~l~~~~~----~------------------~i~~~i~~~l~  671 (833)
                      ||++|..+..              .+|..    .   ....++...    .                  ..+..++..+.
T Consensus       107 ~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  186 (328)
T 1zyl_A          107 PSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVT  186 (328)
T ss_dssp             ECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHHHHH
Confidence            9998854321              01210    0   012233211    0                  01111122222


Q ss_pred             hhh-cCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          672 FLH-GFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       672 ylH-~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      -.. ......++|+|+++.||+++ + .+.+.||+.+...
T Consensus       187 ~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~g  224 (328)
T 1zyl_A          187 AHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARNG  224 (328)
T ss_dssp             HHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCEE
T ss_pred             HHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCcC
Confidence            111 11245689999999999998 4 7899999877654

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=96.17  E-value=0.0079  Score=65.94  Aligned_cols=72  Identities=10%  Similarity=0.033  Sum_probs=47.8

Q ss_pred             cccccCcccEEEEEEcCC--------CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCc-ccceEEEecCCceE
Q 003296          561 NVELKTRFSTYYKAVMPS--------GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNV-MTPLAYVLASDSAY  631 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~ni-v~~~~~~~~~~~~~  631 (833)
                      +.++.|....||++..++        +..+++|+-...      .....+.+|..+++.+...++ .++++.+.  +  .
T Consensus        79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~------~~~~~li~E~~~l~~L~~~g~~P~l~~~~~--~--g  148 (429)
T 1nw1_A           79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP------ETESHLVAESVIFTLLSERHLGPKLYGIFS--G--G  148 (429)
T ss_dssp             EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC------CCHHHHHHHHHHHHHHHHTTSSSCEEEEET--T--E
T ss_pred             EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC------CcHHHHHHHHHHHHHHHhCCCCCcEEEEeC--C--C
Confidence            356677788999998753        578888887211      111456789999988854444 45566543  2  3


Q ss_pred             EEEeeCCCCCh
Q 003296          632 LFYEYAPKGTL  642 (833)
Q Consensus       632 lv~ey~~~g~L  642 (833)
                      +||||++|.++
T Consensus       149 ~v~e~l~G~~l  159 (429)
T 1nw1_A          149 RLEEYIPSRPL  159 (429)
T ss_dssp             EEECCCCEEEC
T ss_pred             EEEEEeCCccc
Confidence            89999986444

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=96.01  E-value=0.017  Score=61.78  Aligned_cols=140  Identities=12%  Similarity=0.081  Sum_probs=81.3

Q ss_pred             ccccCcccEEEEEEcC--------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCc-ccceEEEecCCceEE
Q 003296          562 VELKTRFSTYYKAVMP--------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNV-MTPLAYVLASDSAYL  632 (833)
Q Consensus       562 ~ig~g~~g~vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~ni-v~~~~~~~~~~~~~l  632 (833)
                      .+..|....+|++..+        ++..|++|+-...     ........+|.++++.+.--.+ .++++++..    .+
T Consensus        57 ~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-----~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~  127 (379)
T 3feg_A           57 PVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-----LQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GR  127 (379)
T ss_dssp             EC-----CCEEEEECCTTSCCCSSCCSEEEEEECC--------CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EE
T ss_pred             EcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc-----cchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----cc
Confidence            4555667788998875        3578889886211     1234567799999988853333 445555543    29


Q ss_pred             EEeeCCCCChhhh-----------------hhcCC---CCCCC--HHHHHHHHHHHHH-------------------HHH
Q 003296          633 FYEYAPKGTLFDV-----------------LHGCL---ENALD--WASRYSIAVGVAQ-------------------GLA  671 (833)
Q Consensus       633 v~ey~~~g~L~~~-----------------l~~~~---~~~l~--~~~~~~i~~~i~~-------------------~l~  671 (833)
                      ||||++|..+..-                 +|...   .....  |.+..++..++..                   .+.
T Consensus       128 v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~  207 (379)
T 3feg_A          128 LEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMG  207 (379)
T ss_dssp             EEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHH
T ss_pred             EEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHH
Confidence            9999998655311                 12211   11122  4455555444322                   122


Q ss_pred             h----hhc-CCCCCeeecCCCccceeeCCC----CCceeccceeeeee
Q 003296          672 F----LHG-FTSNPILLLDLSTRNIFLKSL----KEPQIGDIELCKVI  710 (833)
Q Consensus       672 y----lH~-~~~~~iiHrdlk~~Nill~~~----~~~ki~dfgl~~~~  710 (833)
                      .    |.. .....++|+|+.+.||+++.+    +.+.+.||..|...
T Consensus       208 ~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~~  255 (379)
T 3feg_A          208 NLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSYN  255 (379)
T ss_dssp             HHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEEE
T ss_pred             HHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCcC
Confidence            2    221 123468999999999999876    68899999877643

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=95.92  E-value=0.031  Score=59.08  Aligned_cols=34  Identities=12%  Similarity=0.042  Sum_probs=28.9

Q ss_pred             CCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          678 SNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       678 ~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      ...++|+|+.+.||+++.++.+.+.||+.+....
T Consensus       205 ~~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~~~  238 (339)
T 3i1a_A          205 KYVLCHSDIHAGNVLVGNEESIYIIDWDEPMLAP  238 (339)
T ss_dssp             GCEEECSCCCGGGEEECGGGCEEECCCSSCEEEC
T ss_pred             CceeEeCCCCcCCEEEeCCCeEEEEECCCCeeCC
Confidence            3568999999999999987889999998776543

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=95.56  E-value=0.028  Score=61.85  Aligned_cols=73  Identities=14%  Similarity=0.052  Sum_probs=46.0

Q ss_pred             cccccCcccEEEEEEcCC-CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcc-cceEEEecCCceEEEEeeCC
Q 003296          561 NVELKTRFSTYYKAVMPS-GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVM-TPLAYVLASDSAYLFYEYAP  638 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv-~~~~~~~~~~~~~lv~ey~~  638 (833)
                      +.|+.|-...+|+...++ +..+++|+-....     ...-.-.+|..+++.+...+++ ++++++.  +  .+||||++
T Consensus       114 ~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~-----~~~idR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~  184 (458)
T 2qg7_A          114 QIINGGITNILIKVKDMSKQAKYLIRLYGPKT-----DEIINREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMD  184 (458)
T ss_dssp             EEECC--CEEEEEEEETTTTEEEEEEEECC-C-----CSCSCHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCC
T ss_pred             EEcCCCeEeEEEEEEECCCCceEEEEECCCCh-----hhhcCHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeC
Confidence            356677788999998765 5788888763211     1111125899999988755554 5566652  2  35999999


Q ss_pred             CCCh
Q 003296          639 KGTL  642 (833)
Q Consensus       639 ~g~L  642 (833)
                      |.++
T Consensus       185 G~~l  188 (458)
T 2qg7_A          185 GYAL  188 (458)
T ss_dssp             SEEC
T ss_pred             CccC
Confidence            7544

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=95.45  E-value=0.021  Score=61.31  Aligned_cols=73  Identities=11%  Similarity=0.029  Sum_probs=42.6

Q ss_pred             cccccCcccEEEEEEcCC---------CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcc-cceEEEecCCce
Q 003296          561 NVELKTRFSTYYKAVMPS---------GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVM-TPLAYVLASDSA  630 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv-~~~~~~~~~~~~  630 (833)
                      ..++.|..-.+|+....+         +..+++|+-.....     ......+|.++++.+....++ ++++..  +  -
T Consensus        39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~-----~~~~~~~E~~~l~~L~~~g~~P~~~~~~--~--~  109 (369)
T 3c5i_A           39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVD-----ELYNTISEFEVYKTMSKYKIAPQLLNTF--N--G  109 (369)
T ss_dssp             EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGG-----GTSCHHHHHHHHHHHHHTTSSCCEEEEE--T--T
T ss_pred             EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCcc-----ceecHHHHHHHHHHHHhcCCCCceEEec--C--C
Confidence            345667778899988654         26788887632111     111246788888887533443 555543  2  3


Q ss_pred             EEEEeeCCCCCh
Q 003296          631 YLFYEYAPKGTL  642 (833)
Q Consensus       631 ~lv~ey~~~g~L  642 (833)
                      ++||||++|..+
T Consensus       110 ~~v~e~i~G~~l  121 (369)
T 3c5i_A          110 GRIEEWLYGDPL  121 (369)
T ss_dssp             EEEEECCCSEEC
T ss_pred             cEEEEEecCCcC
Confidence            789999997543

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=95.21  E-value=0.038  Score=53.11  Aligned_cols=102  Identities=13%  Similarity=0.095  Sum_probs=64.0

Q ss_pred             ChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCCccc
Q 003296          641 TLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLS  720 (833)
Q Consensus       641 ~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~  720 (833)
                      +|.++|... +.++++.+++.++.|.+++|.-.-.. ..+ ..+=+-|..|++..+|.+...+ +.+.            
T Consensus        34 SL~eIL~~~-~~PlsEEqaWALc~Qc~~~L~~~~~~-~~~-~~~i~~~~~i~l~~dG~V~f~~-~~s~------------   97 (229)
T 2yle_A           34 SLEEILRLY-NQPINEEQAWAVCYQCCGSLRAAARR-RQP-RHRVRSAAQIRVWRDGAVTLAP-AADD------------   97 (229)
T ss_dssp             EHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHT-TCC-CCCCCSGGGEEEETTSCEEECC-C---------------
T ss_pred             cHHHHHHHc-CCCcCHHHHHHHHHHHHHHHHhhhhc-ccC-CceecCCcceEEecCCceeccc-cccc------------
Confidence            789998854 56899999999999999998766100 001 1223446888888888776553 1110            


Q ss_pred             cccccccccccccccCCcccccCcchhhHHHHHHHHhCCCc
Q 003296          721 TVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTA  761 (833)
Q Consensus       721 ~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p  761 (833)
                        .....+.|||... ...+.+.=|||+|+++|.-+--..|
T Consensus        98 --~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~  135 (229)
T 2yle_A           98 --AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLK  135 (229)
T ss_dssp             -----------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             --ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCC
Confidence              1122456888764 3456788899999999998864444

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=91.12  E-value=0.55  Score=50.85  Aligned_cols=139  Identities=15%  Similarity=0.095  Sum_probs=80.7

Q ss_pred             ccccCcccEEEEEEcCC--------CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCc-ccceEEEecCCceEE
Q 003296          562 VELKTRFSTYYKAVMPS--------GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNV-MTPLAYVLASDSAYL  632 (833)
Q Consensus       562 ~ig~g~~g~vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~ni-v~~~~~~~~~~~~~l  632 (833)
                      .+..|....+|+...++        +..|++|+-... .    ...-+-.+|.++++.+.-..+ .++++.+  .  -++
T Consensus        77 ~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~-t----~~~idR~~E~~~l~~L~~~gi~P~l~~~~--~--~~~  147 (424)
T 3mes_A           77 QIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKH-V----GKFYDSKVELDVFRYLSNINIAPNIIADF--P--EGR  147 (424)
T ss_dssp             EECCCSSSEEEEEEECCC-----CCCSEEEEEECCCC-C-----CCCCHHHHHHHHHHHHHTTSSCCEEEEE--T--TEE
T ss_pred             EcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCC-c----chhcCHHHHHHHHHHHHhcCCCCCEEEEc--C--CCE
Confidence            45567777899988753        678888886321 1    111234678888888753333 3445433  2  378


Q ss_pred             EEeeCCCCChhh--h---------------hhcC-----------CCCCCCHHHHHHHHHHH------------------
Q 003296          633 FYEYAPKGTLFD--V---------------LHGC-----------LENALDWASRYSIAVGV------------------  666 (833)
Q Consensus       633 v~ey~~~g~L~~--~---------------l~~~-----------~~~~l~~~~~~~i~~~i------------------  666 (833)
                      ||||++|..|..  .               +|..           ...+--|.+..++..++                  
T Consensus       148 I~efI~G~~l~~~~l~~~~~~~~ia~~La~LH~~~~~~~~L~~~~~~~p~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~  227 (424)
T 3mes_A          148 IEEFIDGEPLTTKQLQLTHICVEVAKNMGSLHIINSKRADFPSRFDKEPILFKRIYLWREEAKIQVSKNNFQIDKELYSK  227 (424)
T ss_dssp             EEECCCSEECCTGGGGSHHHHHHHHHHHHHHHTHHHHCTTSCTTSCCSCCHHHHHHHHHHHHHHHHHTCC--CCHHHHHH
T ss_pred             EEEEeCCccCChhhcCCHHHHHHHHHHHHHHhcCchhhccCccccCCCCcHHHHHHHHHHHHHHhhcccchhhccccHHH
Confidence            999999865421  0               1110           01111244444443222                  


Q ss_pred             -HHHHHhhhc---------------------CCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          667 -AQGLAFLHG---------------------FTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       667 -~~~l~ylH~---------------------~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                       ...+.+|..                     .....++|+|+.+.||+ +.++.+.+.||..|...
T Consensus       228 l~~e~~~L~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~H~D~~~~N~l-~~~~~~~~IDwe~a~~~  292 (424)
T 3mes_A          228 ILEEIDQLEELIMGGEKFSMERALELKLYSPAFSLVFAHNDLQENNLL-QTQNNIRMIDYEYSAIN  292 (424)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHTTCGGGCEEEECSCCCGGGEE-ECSSCEEECCCTTCEEE
T ss_pred             HHHHHHHHHHHHhhhcccccccccccccccCCCCceEECCCCCcccee-cCCCcEEEEecccCCcC
Confidence             122333321                     11345899999999999 77888999999887654

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=87.15  E-value=0.1  Score=57.50  Aligned_cols=61  Identities=3%  Similarity=-0.108  Sum_probs=17.4

Q ss_pred             cccccCcccEEEEEEcCC-CceEEE------EEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec
Q 003296          561 NVELKTRFSTYYKAVMPS-GMSYFI------KKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA  626 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~~-~~~vav------K~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~  626 (833)
                      +.+|   ||.||+|.+.. ..+|||      |..+..  .........|.+|..++++.+|||+++.+++...
T Consensus       148 ~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~--~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~  215 (463)
T 3cxl_A          148 EHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQD--GVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH  215 (463)
T ss_dssp             TTSS---BCCC---------CCBGGGC-------------------------------------CBCCCEEEE
T ss_pred             ccCC---chhhhcccccccCCchhhhhccCccccccc--cccccccccccccccccccccccccCCCcceEEe
Confidence            4455   99999999853 478999      665311  1122334579999999999999999999887753

>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}

Probab=81.41  E-value=3  Score=39.99  Aligned_cols=123  Identities=11%  Similarity=0.156  Sum_probs=82.0

Q ss_pred             HHHHHHhcCCCCCcccceEEEecCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeee
Q 003296          604 KELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILL  683 (833)
Q Consensus       604 ~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiH  683 (833)
                      .|+.+|.. .||+.+.. ..-..++.+.+.|+.-+.+-=+..++     ..+...+++++..|+....+++.     -+|
T Consensus        35 ~el~LL~~-~~~~Fl~~-~I~e~eD~v~~~y~~~~~~~~f~~ik-----~~~~~eKlr~l~ni~~l~~~~~~-----r~t  102 (215)
T 4ann_A           35 HLMYLLEQ-HSPYFIDA-ELTELRDSFQIHYDINDNHTPFDNIK-----SFTKNEKLRYLLNIKNLEEVNRT-----RYT  102 (215)
T ss_dssp             GGGGGGGS-CCTTBCCE-EEEECSSEEEEEECCCTTSEEGGGGG-----GSCHHHHHHHHHHGGGGGGGGGS-----SEE
T ss_pred             HHHHHHhc-cCCcccce-EEEEcccEEEEEEEcCcccCCHHHHH-----hcCHHHHHHHHHHHHHHHHHhcC-----ceE
Confidence            35555544 58988876 56666777777666544332222243     37889999999999887776662     367


Q ss_pred             cCCCccceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcc-hhhHHHHHHHHhCCCcc
Q 003296          684 LDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNV-YSFGVILLELLTGKTAV  762 (833)
Q Consensus       684 rdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv-~S~Gvvl~elltg~~p~  762 (833)
                      --+.|+||.+|.++.+++.-.|+...+                   +|.-.     + ..|- -.+=|++..+++++..|
T Consensus       103 f~L~P~NL~f~~~~~p~i~~RGik~~l-------------------~P~~~-----~-ee~fL~qyKAliiall~~K~~F  157 (215)
T 4ann_A          103 FVLAPDELFFTRDGLPIAKTRGLQNVV-------------------DPLPV-----S-EAEFLTRYKALVICAFNEKQSF  157 (215)
T ss_dssp             CCCSGGGEEECTTSCEEESCCEETTTB-------------------SCCCC-----C-HHHHHHHHHHHHHHHHCTTCCH
T ss_pred             EEEecceEEEcCCCCEEEEEccCccCC-------------------CCCCC-----C-HHHHHHHHHHHHHHHHcCCCCH
Confidence            789999999999999999877754322                   22211     1 1122 24667888888998888


Q ss_pred             c
Q 003296          763 N  763 (833)
Q Consensus       763 ~  763 (833)
                      +
T Consensus       158 e  158 (215)
T 4ann_A          158 D  158 (215)
T ss_dssp             H
T ss_pred             H
Confidence            5

>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}

Probab=81.19  E-value=4.6  Score=38.82  Aligned_cols=120  Identities=15%  Similarity=0.195  Sum_probs=79.8

Q ss_pred             HHHHhcCCCCCcccceEEEecCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHH-hhhcCCCCCeeec
Q 003296          606 LEVLGKLSNSNVMTPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLA-FLHGFTSNPILLL  684 (833)
Q Consensus       606 ~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~-ylH~~~~~~iiHr  684 (833)
                      ..+|.. .||..  -...-.+++.+.+.|+--+++-=+..++     ..+...+++++..++.-.. +++     .-+|-
T Consensus        42 ~~lL~~-~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i~-----~~~~~eKlrll~nl~~L~~~~~~-----~r~tf  108 (219)
T 4ano_A           42 LEVLKE-VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAIR-----KTTLLSRIRAAIHLVSKVKHHSA-----RRLIF  108 (219)
T ss_dssp             GGGGGG-SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHHH-----TSCHHHHHHHHHHHHHHHSSCCS-----SSEEC
T ss_pred             HHHHhc-cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHHH-----hcCHHHHHHHHHHHHHHHHHhhh-----CceeE
Confidence            334433 58888  4455567788888887665543334444     3788899999999988776 555     24677


Q ss_pred             CCCccceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcch-hhHHHHHHHHhCCCccc
Q 003296          685 DLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVY-SFGVILLELLTGKTAVN  763 (833)
Q Consensus       685 dlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~-S~Gvvl~elltg~~p~~  763 (833)
                      -+.|+||.+|.++.+++.-.|+-..                   |+|.-..      ..|-| .+=|++..++.++..|+
T Consensus       109 ~l~P~NL~f~~~~~p~i~hRGi~~~-------------------lpP~e~~------ee~fl~qyKali~all~~K~~Fe  163 (219)
T 4ano_A          109 IVCPENLMFNRALEPFFLHVGVKES-------------------LPPDEWD------DERLLREVKATVLALTEGEYRFD  163 (219)
T ss_dssp             CCCGGGEEECTTCCEEESCCEETTT-------------------BSSCSCC------HHHHHHHHHHHHHHHTTCSSCHH
T ss_pred             EEeCceEEEeCCCcEEEEEcCCccc-------------------CCCCCCC------HHHHHHHHHHHHHHHHcCCCCHH
Confidence            7889999999999999987775332                   3333211      11222 45677778888887774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	833
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	5e-41
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	3e-37
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	2e-35
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	4e-35
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	6e-35
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	2e-34
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	5e-34
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	1e-33
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	2e-33
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	6e-33
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	9e-33
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-32
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	4e-32
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	5e-32
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	1e-31
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	2e-31
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-31
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	4e-31
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	4e-31
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	6e-31
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	7e-31
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	1e-30
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	2e-30
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	6e-30
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	5e-29
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	6e-29
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	1e-28
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	1e-28
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	1e-28
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	4e-28
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	7e-28
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	1e-27
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	8e-27
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	1e-26
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	2e-26
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-26
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-20
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-15
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	5e-26
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	1e-25
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-25
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-21
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-17
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-24
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-23
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-22
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-09
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	2e-23
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	4e-23
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	9e-23
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	6e-21
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	8e-21
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	3e-20
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	5e-20
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	6e-20
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	8e-20
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	1e-19
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	1e-18
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	2e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	9e-18
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	1e-17
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	1e-17
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	4e-17
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	5e-16
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	8e-15
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	9e-15
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	1e-14
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	5e-13
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-13
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	2e-12
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	3e-12
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-12
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-10
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-09
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-09
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	3e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	5e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	7e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-04

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  149 bits (378), Expect = 5e-41
 Identities = 60/265 (22%), Positives = 105/265 (39%), Gaps = 21/265 (7%)

Query: 568 FSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS 627
           F T YK          +K LN +    Q      F  E+ VL K  + N++  + Y   +
Sbjct: 21  FGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGVLRKTRHVNILLFMGYST-A 75

Query: 628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLS 687
               +  ++    +L+  LH   E   +      IA   AQG+ +LH   +  I+  DL 
Sbjct: 76  PQLAIVTQWCEGSSLYHHLHII-ETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDLK 131

Query: 688 TRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMR---VTMAGN 744
           + NIFL      +IGD  L  V      +     ++GS+ ++ PE          +   +
Sbjct: 132 SNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSD 191

Query: 745 VYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTV 804
           VY+FG++L EL+TG+   +  N   +  +     +  L   L    S    A++      
Sbjct: 192 VYAFGIVLYELMTGQLPYSNINN--RDQIIFMVGRGYLSPDLSKVRSNCPKAMK------ 243

Query: 805 LKVAVACVSVSPEARPKMKSVLRML 829
            ++   C+    + RP    +L  +
Sbjct: 244 -RLMAECLKKKRDERPLFPQILASI 267

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (349), Expect = 3e-37
 Identities = 50/264 (18%), Positives = 94/264 (35%), Gaps = 27/264 (10%)

Query: 568 FSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS 627
           F   +           +K L          S   F  E  ++ +L +  ++   A V   
Sbjct: 26  FGEVWMGYYNGHTKVAVKSLKQGSM-----SPDAFLAEANLMKQLQHQRLVRLYAVVT-Q 79

Query: 628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLS 687
           +  Y+  EY   G+L D L       L       +A  +A+G+AF+        +  DL 
Sbjct: 80  EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLR 136

Query: 688 TRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYS 747
             NI +      +I D  L ++I+ ++ T         + +  PE       T+  +V+S
Sbjct: 137 AANILVSDTLSCKIADFGLARLIEDNEYTAR-EGAKFPIKWTAPEAINYGTFTIKSDVWS 195

Query: 748 FGVILLELLTGKTAVNQGNELAKWV--LRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVL 805
           FG++L E++T       G    + +  L    +  + D+  +                + 
Sbjct: 196 FGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPE---------------ELY 240

Query: 806 KVAVACVSVSPEARPKMKSVLRML 829
           ++   C    PE RP    +  +L
Sbjct: 241 QLMRLCWKERPEDRPTFDYLRSVL 264

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  134 bits (338), Expect = 2e-35
 Identities = 56/290 (19%), Positives = 103/290 (35%), Gaps = 47/290 (16%)

Query: 568 FSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPL 621
           F   ++A  P            +K L    +         F +E  ++ +  N N++  L
Sbjct: 26  FGRVFQARAPGLLPYEPFTMVAVKMLK---EEASADMQADFQREAALMAEFDNPNIVKLL 82

Query: 622 AYVLASDSAYLFYEYAPKGTLFDVLHGCLEN----------------------ALDWASR 659
                     L +EY   G L + L     +                       L  A +
Sbjct: 83  GVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQ 142

Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
             IA  VA G+A+L        +  DL+TRN  +      +I D  L + I  +    + 
Sbjct: 143 LCIARQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKAD 199

Query: 720 STVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQ 779
              A  + ++PPE  +  R T   +V+++GV+L E+ +       G             +
Sbjct: 200 GNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMA----------HE 249

Query: 780 DKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
           + + ++ D N+         ++  +++    C S  P  RP   S+ R+L
Sbjct: 250 EVIYYVRDGNILACPENCPLELYNLMR---LCWSKLPADRPSFCSIHRIL 296

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (332), Expect = 4e-35
 Identities = 51/262 (19%), Positives = 93/262 (35%), Gaps = 23/262 (8%)

Query: 568 FSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS 627
           F   +     +     IK +          S   F +E EV+ KLS+  ++      L  
Sbjct: 18  FGLVHLGYWLNKDKVAIKTIREGAM-----SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQ 72

Query: 628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLS 687
               L +E+   G L D L           +   + + V +G+A+L       ++  DL+
Sbjct: 73  APICLVFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLA 128

Query: 688 TRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYS 747
            RN  +   +  ++ D  + + +   + T S +     V +  PE     R +   +V+S
Sbjct: 129 ARNCLVGENQVIKVSDFGMTRFVLDDQYTSS-TGTKFPVKWASPEVFSFSRYSSKSDVWS 187

Query: 748 FGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKV 807
           FGV++ E+ +      +    ++ V   S                     R     V ++
Sbjct: 188 FGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKP-------------RLASTHVYQI 234

Query: 808 AVACVSVSPEARPKMKSVLRML 829
              C    PE RP    +LR L
Sbjct: 235 MNHCWKERPEDRPAFSRLLRQL 256

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (331), Expect = 6e-35
 Identities = 48/265 (18%), Positives = 94/265 (35%), Gaps = 25/265 (9%)

Query: 568 FSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS 627
           F               IK +          S  +F +E +V+  LS+  ++         
Sbjct: 17  FGVVKYGKWRGQYDVAIKMIKEGSM-----SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQ 71

Query: 628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLS 687
              ++  EY   G L + L   + +         +   V + + +L    S   L  DL+
Sbjct: 72  RPIFIITEYMANGCLLNYLR-EMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLA 127

Query: 688 TRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYS 747
            RN  +      ++ D  L + +   + T S+ +    V + PPE     + +   ++++
Sbjct: 128 ARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSK-FPVRWSPPEVLMYSKFSSKSDIWA 186

Query: 748 FGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD-FNVSRTSLAVRSQMLTVLK 806
           FGV++ E+ +          L K         +  +HI     + R  LA       V  
Sbjct: 187 FGVLMWEIYS----------LGKMPYERFTNSETAEHIAQGLRLYRPHLASEK----VYT 232

Query: 807 VAVACVSVSPEARPKMKSVLRMLLN 831
           +  +C     + RP  K +L  +L+
Sbjct: 233 IMYSCWHEKADERPTFKILLSNILD 257

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (332), Expect = 2e-34
 Identities = 57/285 (20%), Positives = 100/285 (35%), Gaps = 41/285 (14%)

Query: 568 FSTYYKAVM------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS-NVMTP 620
           F    +A         + M+  +K L  S     L        EL+VL  L N  N++  
Sbjct: 36  FGKVVEATAYGLIKSDAAMTVAVKMLKPSAH---LTEREALMSELKVLSYLGNHMNIVNL 92

Query: 621 LAYVLASDSAYLFYEYAPKGTLFDVLHGCLEN----------------ALDWASRYSIAV 664
           L          +  EY   G L + L    ++                ALD     S + 
Sbjct: 93  LGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSY 152

Query: 665 GVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAG 724
            VA+G+AFL    S   +  DL+ RNI L   +  +I D  L + I    +         
Sbjct: 153 QVAKGMAFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARL 209

Query: 725 SVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDH 784
            V ++ PE  +    T   +V+S+G+ L EL +  ++   G  +     +    ++    
Sbjct: 210 PVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYK--MIKEGFRM 267

Query: 785 ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
           +   +              +  +   C    P  RP  K +++++
Sbjct: 268 LSPEHAPA----------EMYDIMKTCWDADPLKRPTFKQIVQLI 302

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  129 bits (326), Expect = 5e-34
 Identities = 44/263 (16%), Positives = 99/263 (37%), Gaps = 23/263 (8%)

Query: 568 FSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           +   Y+ V     ++  +K L       +     +F KE  V+ ++ + N++  L     
Sbjct: 30  YGEVYEGVWKKYSLTVAVKTLKEDTMEVE-----EFLKEAAVMKEIKHPNLVQLLGVCTR 84

Query: 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL 686
               Y+  E+   G L D L  C    +       +A  ++  + +L        +  DL
Sbjct: 85  EPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDL 141

Query: 687 STRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVY 746
           + RN  +      ++ D  L +++     T + +     + +  PE     + ++  +V+
Sbjct: 142 AARNCLVGENHLVKVADFGLSRLMTGDTYT-AHAGAKFPIKWTAPESLAYNKFSIKSDVW 200

Query: 747 SFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLK 806
           +FGV+L E+ T   +   G +L++  +    ++D      +    +           V +
Sbjct: 201 AFGVLLWEIATYGMSPYPGIDLSQ--VYELLEKDYRMERPEGCPEK-----------VYE 247

Query: 807 VAVACVSVSPEARPKMKSVLRML 829
           +  AC   +P  RP    + +  
Sbjct: 248 LMRACWQWNPSDRPSFAEIHQAF 270

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (324), Expect = 1e-33
 Identities = 57/265 (21%), Positives = 96/265 (36%), Gaps = 29/265 (10%)

Query: 568 FSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS 627
           F   +           IK L          S   F +E +V+ KL +  ++   A V + 
Sbjct: 30  FGEVWMGTWNGTTRVAIKTLKPGTM-----SPEAFLQEAQVMKKLRHEKLVQLYAVV-SE 83

Query: 628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLS 687
           +  Y+  EY  KG+L D L G     L       +A  +A G+A++        +  DL 
Sbjct: 84  EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLR 140

Query: 688 TRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYS 747
             NI +      ++ D  L ++I+ ++ T +       + +  PE A   R T+  +V+S
Sbjct: 141 AANILVGENLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAPEAALYGRFTIKSDVWS 199

Query: 748 FGVILLELLTGKTAVNQGN---ELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTV 804
           FG++L EL T       G    E+   V R                            ++
Sbjct: 200 FGILLTELTTKGRVPYPGMVNREVLDQVERG------YRMPCPPECPE----------SL 243

Query: 805 LKVAVACVSVSPEARPKMKSVLRML 829
             +   C    PE RP  + +   L
Sbjct: 244 HDLMCQCWRKEPEERPTFEYLQAFL 268

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (321), Expect = 2e-33
 Identities = 47/262 (17%), Positives = 97/262 (37%), Gaps = 22/262 (8%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           +     AV   +  +  +K ++    +          KE+ +   L++ NV+    +   
Sbjct: 18  YGEVQLAVNRVTEEAVAVKIVDMKRAV---DCPENIKKEICINKMLNHENVVKFYGHRRE 74

Query: 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL 686
            +  YLF EY   G LFD +    +  +           +  G+ +LH      I   D+
Sbjct: 75  GNIQYLFLEYCSGGELFDRIEP--DIGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDI 129

Query: 687 STRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRV-TMAGNV 745
              N+ L      +I D  L  V   +     L+ + G++ Y+ PE            +V
Sbjct: 130 KPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDV 189

Query: 746 YSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVL 805
           +S G++L  +L G+   +Q ++  +       ++  L+      +    LA+  ++L   
Sbjct: 190 WSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWK--KIDSAPLALLHKILV-- 245

Query: 806 KVAVACVSVSPEARPKMKSVLR 827
                    +P AR  +  + +
Sbjct: 246 --------ENPSARITIPDIKK 259

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (320), Expect = 6e-33
 Identities = 53/279 (18%), Positives = 100/279 (35%), Gaps = 39/279 (13%)

Query: 568 FSTYYKAV------MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPL 621
           F   Y+ V              IK +N   +   +    +F  E  V+ + +  +V+  L
Sbjct: 33  FGMVYEGVAKGVVKDEPETRVAIKTVN---EAASMRERIEFLNEASVMKEFNCHHVVRLL 89

Query: 622 AYVLASDSAYLFYEYAPKGTLFDVLHGC--------LENALDWASRYSIAVGVAQGLAFL 673
             V       +  E   +G L   L           +      +    +A  +A G+A+L
Sbjct: 90  GVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYL 149

Query: 674 HGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEY 733
           +   +N  +  DL+ RN  +      +IGD  + + I  +            V ++ PE 
Sbjct: 150 N---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPES 206

Query: 734 AYTMRVTMAGNVYSFGVILLELLTGKTAVNQG---NELAKWVLRNSAQQDKLDHILDFNV 790
                 T   +V+SFGV+L E+ T      QG    ++ ++V+      DK D+  D   
Sbjct: 207 LKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGG-LLDKPDNCPD--- 262

Query: 791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
                        + ++   C   +P+ RP    ++  +
Sbjct: 263 ------------MLFELMRMCWQYNPKMRPSFLEIISSI 289

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (317), Expect = 9e-33
 Identities = 46/266 (17%), Positives = 97/266 (36%), Gaps = 25/266 (9%)

Query: 568 FSTYYKAVM---PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYV 624
           F +  + V       +   IK L    +  +     +  +E +++ +L N  ++  L  V
Sbjct: 22  FGSVRQGVYRMRKKQIDVAIKVLK---QGTEKADTEEMMREAQIMHQLDNPYIVR-LIGV 77

Query: 625 LASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLL 684
             +++  L  E A  G L   L G     +  ++   +   V+ G+ +L        +  
Sbjct: 78  CQAEALMLVMEMAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLE---EKNFVHR 133

Query: 685 DLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL-STVAGSVGYIPPEYAYTMRVTMAG 743
           DL+ RN+ L +    +I D  L K +    S  +  S     + +  PE     + +   
Sbjct: 134 DLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRS 193

Query: 744 NVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLT 803
           +V+S+GV + E L+      +  +  + V+    Q  +++                    
Sbjct: 194 DVWSYGVTMWEALSYGQKPYKKMKGPE-VMAFIEQGKRME--CPPECPP----------E 240

Query: 804 VLKVAVACVSVSPEARPKMKSVLRML 829
           +  +   C     E RP   +V + +
Sbjct: 241 LYALMSDCWIYKWEDRPDFLTVEQRM 266

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (318), Expect = 1e-32
 Identities = 52/290 (17%), Positives = 95/290 (32%), Gaps = 46/290 (15%)

Query: 568 FSTYYKAVMPS------GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSN-SNVMTP 620
           F     A           +   +K L    +            EL+++ +L +  N++  
Sbjct: 50  FGKVMNATAYGISKTGVSIQVAVKMLK---EKADSSEREALMSELKMMTQLGSHENIVNL 106

Query: 621 LAYVLASDSAYLFYEYAPKGTLFDVLHGCLE---------------------NALDWASR 659
           L     S   YL +EY   G L + L    E                     N L +   
Sbjct: 107 LGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDL 166

Query: 660 YSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL 719
              A  VA+G+ FL        +  DL+ RN+ +   K  +I D  L + I    +    
Sbjct: 167 LCFAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVR 223

Query: 720 STVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQ 779
                 V ++ PE  +    T+  +V+S+G++L E+ +       G  +     +     
Sbjct: 224 GNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNG 283

Query: 780 DKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
            K+D    F  +            +  +  +C +     RP   ++   L
Sbjct: 284 FKMD--QPFYATE----------EIYIIMQSCWAFDSRKRPSFPNLTSFL 321

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (310), Expect = 4e-32
 Identities = 52/265 (19%), Positives = 92/265 (34%), Gaps = 33/265 (12%)

Query: 568 FSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS 627
           F          G    +K +  +D   Q      F  E  V+ +L +SN++  L  ++  
Sbjct: 20  FGDVMLGDY-RGNKVAVKCIK-NDATAQ-----AFLAEASVMTQLRHSNLVQLLGVIVEE 72

Query: 628 DSA-YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL 686
               Y+  EY  KG+L D L     + L        ++ V + + +L     N  +  DL
Sbjct: 73  KGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDL 129

Query: 687 STRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVY 746
           + RN+ +      ++ D  L K    ++ TG        V +  PE     + +   +V+
Sbjct: 130 AARNVLVSEDNVAKVSDFGLTKEASSTQDTGK-----LPVKWTAPEALREKKFSTKSDVW 184

Query: 747 SFGVILLELLTGKTAVNQGNELAKWV--LRNSAQQDKLDHILDFNVSRTSLAVRSQMLTV 804
           SFG++L E+ +          L   V  +    + D  D                    V
Sbjct: 185 SFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPP---------------AV 229

Query: 805 LKVAVACVSVSPEARPKMKSVLRML 829
            +V   C  +    RP    +   L
Sbjct: 230 YEVMKNCWHLDAAMRPSFLQLREQL 254

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (314), Expect = 5e-32
 Identities = 35/201 (17%), Positives = 82/201 (40%), Gaps = 12/201 (5%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
               +K    PSG+    K ++      +    ++  +EL+VL + ++  ++       +
Sbjct: 19  GGVVFKVSHKPSGLVMARKLIH---LEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS 75

Query: 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL 686
                +  E+   G+L  VL       +       +++ V +GL +L     + I+  D+
Sbjct: 76  DGEISICMEHMDGGSLDQVLKK--AGRIPEQILGKVSIAVIKGLTYLR--EKHKIMHRDV 131

Query: 687 STRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVY 746
              NI + S  E ++ D  +   +  S +     +  G+  Y+ PE       ++  +++
Sbjct: 132 KPSNILVNSRGEIKLCDFGVSGQLIDSMAN----SFVGTRSYMSPERLQGTHYSVQSDIW 187

Query: 747 SFGVILLELLTGKTAVNQGNE 767
           S G+ L+E+  G+  +   + 
Sbjct: 188 SMGLSLVEMAVGRYPIPPPDA 208

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (310), Expect = 1e-31
 Identities = 53/271 (19%), Positives = 97/271 (35%), Gaps = 31/271 (11%)

Query: 568 FSTYYKAVMP----SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAY 623
           F   Y   +       +   +K LN   +I  +G   +F  E  ++   S+ NV++ L  
Sbjct: 40  FGCVYHGTLLDNDGKKIHCAVKSLN---RITDIGEVSQFLTEGIIMKDFSHPNVLSLLGI 96

Query: 624 VLASD-SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPIL 682
            L S+ S  +   Y   G L +       +           + VA+G+ FL    S   +
Sbjct: 97  CLRSEGSPLVVLPYMKHGDLRN-FIRNETHNPTVKDLIGFGLQVAKGMKFLA---SKKFV 152

Query: 683 LLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK--STGSLSTVAGSVGYIPPEYAYTMRVT 740
             DL+ RN  L      ++ D  L + +   +  S  + +     V ++  E   T + T
Sbjct: 153 HRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFT 212

Query: 741 MAGNVYSFGVILLELLTGKTAVNQGNELAKWV--LRNSAQQDKLDHILDFNVSRTSLAVR 798
              +V+SFGV+L EL+T                 L    +  + ++  D           
Sbjct: 213 TKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPD----------- 261

Query: 799 SQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
                + +V + C     E RP    ++  +
Sbjct: 262 ----PLYEVMLKCWHPKAEMRPSFSELVSRI 288

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (308), Expect = 2e-31
 Identities = 48/287 (16%), Positives = 100/287 (34%), Gaps = 35/287 (12%)

Query: 568 FSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS 627
           F   ++     G    +K  +  ++          + E+     L + N++  +A     
Sbjct: 16  FGEVWRGKW-RGEEVAVKIFSSREE-----RSWFREAEIYQTVMLRHENILGFIAADNKD 69

Query: 628 DSA----YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLH-----GFTS 678
           +      +L  +Y   G+LFD L+      +       +A+  A GLA LH         
Sbjct: 70  NGTWTQLWLVSDYHEHGSLFDYLN---RYTVTVEGMIKLALSTASGLAHLHMEIVGTQGK 126

Query: 679 NPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL--STVAGSVGYIPPEYAYT 736
             I   DL ++NI +K      I D+ L    D +  T  +  +   G+  Y+ PE    
Sbjct: 127 PAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDD 186

Query: 737 M------RVTMAGNVYSFGVILLELLTGKTAVNQGNE----LAKWVLRNSAQQDKLDHIL 786
                        ++Y+ G++  E+    +      +        V  + + ++    + 
Sbjct: 187 SINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVC 246

Query: 787 DFNVSRTSLAVRSQ----MLTVLKVAVACVSVSPEARPKMKSVLRML 829
           +  + R ++  R Q    +  + K+   C   +  AR     + + L
Sbjct: 247 EQKL-RPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTL 292

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (305), Expect = 2e-31
 Identities = 44/267 (16%), Positives = 93/267 (34%), Gaps = 25/267 (9%)

Query: 568 FSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVL- 625
           +    K      G     K+L++               E+ +L +L + N++     ++ 
Sbjct: 17  YGRCQKIRRKSDGKILVWKELDYGS--MTEAEKQMLVSEVNLLRELKHPNIVRYYDRIID 74

Query: 626 -ASDSAYLFYEYAPKGTLFDVLHGCLEN--ALDWASRYSIAVGVAQGLAFLH--GFTSNP 680
             + + Y+  EY   G L  V+    +    LD      +   +   L   H      + 
Sbjct: 75  RTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHT 134

Query: 681 ILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVT 740
           +L  DL   N+FL   +  ++GD  L ++++   S        G+  Y+ PE    M   
Sbjct: 135 VLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSF--AKAFVGTPYYMSPEQMNRMSYN 192

Query: 741 MAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQ 800
              +++S G +L EL          +           Q++    I +    R       +
Sbjct: 193 EKSDIWSLGCLLYELCALMPPFTAFS-----------QKELAGKIREGKFRRIPYRYSDE 241

Query: 801 MLTVLKVAVACVSVSPEARPKMKSVLR 827
           +  ++      +++    RP ++ +L 
Sbjct: 242 LNEIIT---RMLNLKDYHRPSVEEILE 265

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (303), Expect = 4e-31
 Identities = 55/274 (20%), Positives = 102/274 (37%), Gaps = 29/274 (10%)

Query: 568 FSTYYKAVMPS----GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAY 623
           F    +    +     +S  +K L   D + Q  +   F +E+  +  L + N++     
Sbjct: 21  FGVVRRGEWDAPSGKTVSVAVKCLK-PDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGV 79

Query: 624 VLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILL 683
           VL +    +  E AP G+L D      +      +    AV VA+G+ +L    S   + 
Sbjct: 80  VL-TPPMKMVTELAPLGSLLD-RLRKHQGHFLLGTLSRYAVQVAEGMGYLE---SKRFIH 134

Query: 684 LDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST-VAGSVGYIPPEYAYTMRVTMA 742
            DL+ RN+ L +    +IGD  L + +  +     +         +  PE   T   + A
Sbjct: 135 RDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHA 194

Query: 743 GNVYSFGVILLELLTGKTAVNQG---NELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRS 799
            + + FGV L E+ T       G   +++   + +   +  + +                
Sbjct: 195 SDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQ------------ 242

Query: 800 QMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR 833
               +  V V C +  PE RP   ++   LL A+
Sbjct: 243 ---DIYNVMVQCWAHKPEDRPTFVALRDFLLEAQ 273

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (303), Expect = 4e-31
 Identities = 47/266 (17%), Positives = 93/266 (34%), Gaps = 25/266 (9%)

Query: 568 FSTYYKAVMP---SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYV 624
           F T  K          +  +K L   ++        +   E  V+ +L N  ++  +  +
Sbjct: 20  FGTVKKGYYQMKKVVKTVAVKILK--NEANDPALKDELLAEANVMQQLDNPYIVR-MIGI 76

Query: 625 LASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLL 684
             ++S  L  E A  G L   L       +   +   +   V+ G+ +L     +  +  
Sbjct: 77  CEAESWMLVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLE---ESNFVHR 131

Query: 685 DLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLST-VAGSVGYIPPEYAYTMRVTMAG 743
           DL+ RN+ L +    +I D  L K +   ++     T     V +  PE     + +   
Sbjct: 132 DLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKS 191

Query: 744 NVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLT 803
           +V+SFGV++ E  +      +G +    V     + +++         R           
Sbjct: 192 DVWSFGVLMWEAFSYGQKPYRGMK-GSEVTAMLEKGERMG--CPAGCPR----------E 238

Query: 804 VLKVAVACVSVSPEARPKMKSVLRML 829
           +  +   C +   E RP   +V   L
Sbjct: 239 MYDLMNLCWTYDVENRPGFAAVELRL 264

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (303), Expect = 6e-31
 Identities = 50/268 (18%), Positives = 97/268 (36%), Gaps = 26/268 (9%)

Query: 568 FSTYYKAVMPSG-----MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLA 622
           F   YK ++ +      +   IK L      +       F  E  ++G+ S+ N++    
Sbjct: 20  FGEVYKGMLKTSSGKKEVPVAIKTLK---AGYTEKQRVDFLGEAGIMGQFSHHNIIRLEG 76

Query: 623 YVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPIL 682
            +       +  EY   G L   L    +          +  G+A G+ +L    +   +
Sbjct: 77  VISKYKPMMIITEYMENGALDKFLREK-DGEFSVLQLVGMLRGIAAGMKYLA---NMNYV 132

Query: 683 LLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS-TGSLSTVAGSVGYIPPEYAYTMRVTM 741
             DL+ RNI + S    ++ D  L +V++     T + S     + +  PE     + T 
Sbjct: 133 HRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTS 192

Query: 742 AGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQM 801
           A +V+SFG+++ E++T         E   W L N      ++                  
Sbjct: 193 ASDVWSFGIVMWEVMTYG-------ERPYWELSNHEVMKAINDGFRLPTP------MDCP 239

Query: 802 LTVLKVAVACVSVSPEARPKMKSVLRML 829
             + ++ + C       RPK   ++ +L
Sbjct: 240 SAIYQLMMQCWQQERARRPKFADIVSIL 267

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 7e-31
 Identities = 56/261 (21%), Positives = 98/261 (37%), Gaps = 26/261 (9%)

Query: 568 FSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           F   Y A    S     +K L    ++ + G  H+  +E+E+   L + N++    Y   
Sbjct: 19  FGNVYLAREKQSKFILALKVLF-KAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHD 77

Query: 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL 686
           +   YL  EYAP GT++  L     +  D     +    +A  L++ H   S  ++  D+
Sbjct: 78  ATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCH---SKRVIHRDI 132

Query: 687 STRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVY 746
              N+ L S  E +I D         S+     +T+ G++ Y+PPE           +++
Sbjct: 133 KPENLLLGSAGELKIADFGWSVHAPSSR----RTTLCGTLDYLPPEMIEGRMHDEKVDLW 188

Query: 747 SFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLK 806
           S GV+  E L GK                   Q+    I     +     V      ++ 
Sbjct: 189 SLGVLCYEFLVGKPPFEANTY-----------QETYKRISRVEFTFPDF-VTEGARDLIS 236

Query: 807 VAVACVSVSPEARPKMKSVLR 827
                +  +P  RP ++ VL 
Sbjct: 237 ---RLLKHNPSQRPMLREVLE 254

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 1e-30
 Identities = 56/261 (21%), Positives = 103/261 (39%), Gaps = 25/261 (9%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
             T Y A+ + +G    I+++N   +  +         E+ V+ +  N N++  L   L 
Sbjct: 33  SGTVYTAMDVATGQEVAIRQMNLQQQPKK----ELIINEILVMRENKNPNIVNYLDSYLV 88

Query: 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL 686
            D  ++  EY   G+L DV+    E  +D     ++     Q L FLH   SN ++  D+
Sbjct: 89  GDELWVVMEYLAGGSLTDVVT---ETCMDEGQIAAVCRECLQALEFLH---SNQVIHRDI 142

Query: 687 STRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVY 746
            + NI L      ++ D   C  I P +S    ST+ G+  ++ PE           +++
Sbjct: 143 KSDNILLGMDGSVKLTDFGFCAQITPEQSK--RSTMVGTPYWMAPEVVTRKAYGPKVDIW 200

Query: 747 SFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLK 806
           S G++ +E++ G+      N L    L   A     +      +S       ++ L    
Sbjct: 201 SLGIMAIEMIEGEPPYLNENPLR--ALYLIATNGTPELQNPEKLSAIFRDFLNRCLD--- 255

Query: 807 VAVACVSVSPEARPKMKSVLR 827
                  +  E R   K +L+
Sbjct: 256 -------MDVEKRGSAKELLQ 269

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 2e-30
 Identities = 59/277 (21%), Positives = 92/277 (33%), Gaps = 34/277 (12%)

Query: 568 FSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS-NVMTPLAYVLA 626
           F    KA +          +    +      H  F  ELEVL KL +  N++  L     
Sbjct: 23  FGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH 82

Query: 627 SDSAYLFYEYAPKGTLFDVLHGC--------------LENALDWASRYSIAVGVAQGLAF 672
               YL  EYAP G L D L                   + L        A  VA+G+ +
Sbjct: 83  RGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDY 142

Query: 673 LHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPE 732
           L        +  DL+ RNI +      +I D  L +  +        +     V ++  E
Sbjct: 143 LS---QKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKK---TMGRLPVRWMAIE 196

Query: 733 YAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR 792
                  T   +V+S+GV+L E+++       G   A+       Q  +L+  L+ +   
Sbjct: 197 SLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAEL-YEKLPQGYRLEKPLNCDDE- 254

Query: 793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
                      V  +   C    P  RP    +L  L
Sbjct: 255 -----------VYDLMRQCWREKPYERPSFAQILVSL 280

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  118 bits (297), Expect = 6e-30
 Identities = 56/264 (21%), Positives = 96/264 (36%), Gaps = 29/264 (10%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           F   Y A  + +     IKK+++S K           KE+  L KL + N +      L 
Sbjct: 28  FGAVYFARDVRNSEVVAIKKMSYSGKQ-SNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLR 86

Query: 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL 686
             +A+L  EY        +     +  L      ++  G  QGLA+LH   S+ ++  D+
Sbjct: 87  EHTAWLVMEYCLGSASDLLEVH--KKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDV 141

Query: 687 STRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTM---RVTMAG 743
              NI L      ++GD     ++ P+       +  G+  ++ PE    M   +     
Sbjct: 142 KAGNILLSEPGLVKLGDFGSASIMAPAN------SFVGTPYWMAPEVILAMDEGQYDGKV 195

Query: 744 NVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLT 803
           +V+S G+  +EL   K             L N      L HI             S+   
Sbjct: 196 DVWSLGITCIELAERKPP-----------LFNMNAMSALYHIAQNESPALQSGHWSEYF- 243

Query: 804 VLKVAVACVSVSPEARPKMKSVLR 827
                 +C+   P+ RP  + +L+
Sbjct: 244 -RNFVDSCLQKIPQDRPTSEVLLK 266

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (288), Expect = 5e-29
 Identities = 53/266 (19%), Positives = 102/266 (38%), Gaps = 26/266 (9%)

Query: 568 FSTYYKAVMPS----GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAY 623
           F   ++ +  S     ++  IK               KF +E   + +  + +++  L  
Sbjct: 20  FGDVHQGIYMSPENPALAVAIKTC---KNCTSDSVREKFLQEALTMRQFDHPHIVK-LIG 75

Query: 624 VLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILL 683
           V+  +  ++  E    G L   L    + +LD AS    A  ++  LA+L    S   + 
Sbjct: 76  VITENPVWIIMELCTLGELRSFLQVR-KYSLDLASLILYAYQLSTALAYLE---SKRFVH 131

Query: 684 LDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAG 743
            D++ RN+ + S    ++GD  L + ++ S    + S     + ++ PE     R T A 
Sbjct: 132 RDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKA-SKGKLPIKWMAPESINFRRFTSAS 190

Query: 744 NVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLT 803
           +V+ FGV + E+L       QG +    V+      ++L   +  N             T
Sbjct: 191 DVWMFGVCMWEILMHGVKPFQGVKN-NDVIGRIENGERLP--MPPNCPP----------T 237

Query: 804 VLKVAVACVSVSPEARPKMKSVLRML 829
           +  +   C +  P  RP+   +   L
Sbjct: 238 LYSLMTKCWAYDPSRRPRFTELKAQL 263

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (288), Expect = 6e-29
 Identities = 42/266 (15%), Positives = 90/266 (33%), Gaps = 28/266 (10%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           F   YKA    + +    K ++   +         +  E+++L    + N++  L     
Sbjct: 25  FGKVYKAQNKETSVLAAAKVIDTKSEEEL----EDYMVEIDILASCDHPNIVKLLDAFYY 80

Query: 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL 686
            ++ ++  E+   G +  V+   LE  L  +    +       L +LH    N I+  DL
Sbjct: 81  ENNLWILIEFCAGGAVDAVMLE-LERPLTESQIQVVCKQTLDALNYLH---DNKIIHRDL 136

Query: 687 STRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTM-----RVTM 741
              NI      + ++ D  +      +       +  G+  ++ PE              
Sbjct: 137 KAGNILFTLDGDIKLADFGVSAKNTRTIQR--RDSFIGTPYWMAPEVVMCETSKDRPYDY 194

Query: 742 AGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQM 801
             +V+S G+ L+E+   +   ++ N +   VL   A+ +          S        + 
Sbjct: 195 KADVWSLGITLIEMAEIEPPHHELNPMR--VLLKIAKSEPPTLAQPSRWSSNFKDFLKKC 252

Query: 802 LTVLKVAVACVSVSPEARPKMKSVLR 827
           L            + +AR     +L+
Sbjct: 253 LE----------KNVDARWTTSQLLQ 268

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  114 bits (286), Expect = 1e-28
 Identities = 44/266 (16%), Positives = 93/266 (34%), Gaps = 21/266 (7%)

Query: 568 FSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           F       +   G       +      +       F  E  ++G+  + NV+     V  
Sbjct: 39  FGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTK 98

Query: 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL 686
           S    +  E+   G+L D      +          +  G+A G+ +L        +  DL
Sbjct: 99  STPVMIITEFMENGSL-DSFLRQNDGQFTVIQLVGMLRGIAAGMKYLA---DMNYVHRDL 154

Query: 687 STRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVG---YIPPEYAYTMRVTMAG 743
           + RNI + S    ++ D  L + ++   S  + ++  G      +  PE     + T A 
Sbjct: 155 AARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSAS 214

Query: 744 NVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLT 803
           +V+S+G+++ E+++            +    +   QD ++ I         +   S +  
Sbjct: 215 DVWSYGIVMWEVMS----------YGERPYWDMTNQDVINAIEQDYRLPPPMDCPSAL-- 262

Query: 804 VLKVAVACVSVSPEARPKMKSVLRML 829
             ++ + C       RPK   ++  L
Sbjct: 263 -HQLMLDCWQKDRNHRPKFGQIVNTL 287

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (287), Expect = 1e-28
 Identities = 48/267 (17%), Positives = 103/267 (38%), Gaps = 26/267 (9%)

Query: 568 FSTYYKAVMPS-----GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLA 622
           F T YK +         +   IK+L    +     ++ +   E  V+  + N +V   L 
Sbjct: 22  FGTVYKGLWIPEGEKVKIPVAIKELR---EATSPKANKEILDEAYVMASVDNPHVCR-LL 77

Query: 623 YVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPIL 682
            +  + +  L  +  P G L D +    +N        +  V +A+G+ +L       ++
Sbjct: 78  GICLTSTVQLITQLMPFGCLLDYVREHKDNI-GSQYLLNWCVQIAKGMNYLE---DRRLV 133

Query: 683 LLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMA 742
             DL+ RN+ +K+ +  +I D  L K++   +           + ++  E       T  
Sbjct: 134 HRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQ 193

Query: 743 GNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQML 802
            +V+S+GV + EL+T  +    G   ++ +     + ++L       +            
Sbjct: 194 SDVWSYGVTVWELMTFGSKPYDGIPASE-ISSILEKGERLPQPPICTID----------- 241

Query: 803 TVLKVAVACVSVSPEARPKMKSVLRML 829
            V  + V C  +  ++RPK + ++   
Sbjct: 242 -VYMIMVKCWMIDADSRPKFRELIIEF 267

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 1e-28
 Identities = 49/284 (17%), Positives = 92/284 (32%), Gaps = 40/284 (14%)

Query: 568 FSTYYKAVM------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPL 621
           F    +A         +  +  +K L    +      H     EL++L  + +   +  L
Sbjct: 26  FGQVIEADAFGIDKTATCRTVAVKMLK---EGATHSEHRALMSELKILIHIGHHLNVVNL 82

Query: 622 AYVLASDSAYLF--YEYAPKGTLFDVLHGC--------------LENALDWASRYSIAVG 665
                     L    E+   G L   L                  ++ L        +  
Sbjct: 83  LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQ 142

Query: 666 VAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGS 725
           VA+G+ FL    S   +  DL+ RNI L      +I D  L + I               
Sbjct: 143 VAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLP 199

Query: 726 VGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHI 785
           + ++ PE  +    T+  +V+SFGV+L E+ +   +   G ++ +   R   +  ++   
Sbjct: 200 LKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMR-A 258

Query: 786 LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
            D+               + +  + C    P  RP    ++  L
Sbjct: 259 PDYTTPE-----------MYQTMLDCWHGEPSQRPTFSELVEHL 291

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (282), Expect = 4e-28
 Identities = 46/260 (17%), Positives = 83/260 (31%), Gaps = 22/260 (8%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           FST   A  + +   Y IK L     I +        +E +V+ +L +   +        
Sbjct: 21  FSTVVLARELATSREYAIKILE-KRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQD 79

Query: 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL 686
            +  Y    YA  G L   +      + D          +   L +LH      I+  DL
Sbjct: 80  DEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFYTAEIVSALEYLH---GKGIIHRDL 134

Query: 687 STRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVY 746
              NI L      QI D    KV+ P       ++  G+  Y+ PE         + +++
Sbjct: 135 KPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLW 194

Query: 747 SFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLK 806
           + G I+ +L+ G      GNE                 I+             +   +++
Sbjct: 195 ALGCIIYQLVAGLPPFRAGNE-----------YLIFQKIIKLEYDFPE-KFFPKARDLVE 242

Query: 807 VAVACVSVSPEARPKMKSVL 826
                + +    R   + + 
Sbjct: 243 ---KLLVLDATKRLGCEEME 259

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (280), Expect = 7e-28
 Identities = 54/285 (18%), Positives = 93/285 (32%), Gaps = 42/285 (14%)

Query: 568 FSTYYKAVMPS--------GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS-NVM 618
           F     A                 +K L                 E+E++  +    N++
Sbjct: 26  FGQVVLAEAIGLDKDKPNRVTKVAVKMLK---SDATEKDLSDLISEMEMMKMIGKHKNII 82

Query: 619 TPLAYVLASDSAYLFYEYAPKGTLFDVLHGC--------------LENALDWASRYSIAV 664
             L         Y+  EYA KG L + L                  E  L      S A 
Sbjct: 83  NLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAY 142

Query: 665 GVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAG 724
            VA+G+ +L    S   +  DL+ RN+ +      +I D  L + I         +    
Sbjct: 143 QVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRL 199

Query: 725 SVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDH 784
            V ++ PE  +    T   +V+SFGV+L E+ T   +   G  + + + +   +  ++D 
Sbjct: 200 PVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPV-EELFKLLKEGHRMD- 257

Query: 785 ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
               N +            +  +   C    P  RP  K ++  L
Sbjct: 258 -KPSNCTN----------ELYMMMRDCWHAVPSQRPTFKQLVEDL 291

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (277), Expect = 1e-27
 Identities = 55/266 (20%), Positives = 97/266 (36%), Gaps = 28/266 (10%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAY--- 623
           F T YK +   + +     +L   D+        +F +E E+L  L + N++        
Sbjct: 22  FKTVYKGLDTETTVEVAWCELQ--DRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWES 79

Query: 624 -VLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPIL 682
            V       L  E    GTL   L       +      S    + +GL FLH   + PI+
Sbjct: 80  TVKGKKCIVLVTELMTSGTLKTYLKR--FKVMKIKVLRSWCRQILKGLQFLH-TRTPPII 136

Query: 683 LLDLSTRNIFLKS-LKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTM 741
             DL   NIF+       +IGD+ L  +   S +      V G+  ++ PE  Y  +   
Sbjct: 137 HRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAK----AVIGTPEFMAPEM-YEEKYDE 191

Query: 742 AGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQM 801
           + +VY+FG+ +LE+ T +   ++        +             D              
Sbjct: 192 SVDVYAFGMCMLEMATSEYPYSECQNA--AQIYRRVTSGVKPASFDKVAIP--------- 240

Query: 802 LTVLKVAVACVSVSPEARPKMKSVLR 827
             V ++   C+  + + R  +K +L 
Sbjct: 241 -EVKEIIEGCIRQNKDERYSIKDLLN 265

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  108 bits (271), Expect = 8e-27
 Identities = 54/273 (19%), Positives = 99/273 (36%), Gaps = 24/273 (8%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
            S  + A  +       +K L  +D       + +F +E +    L++  ++       A
Sbjct: 20  MSEVHLARDLRLHRDVAVKVLR-ADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEA 78

Query: 627 SDSA----YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPIL 682
              A    Y+  EY    TL D++H      +       +     Q L F H    N I+
Sbjct: 79  ETPAGPLPYIVMEYVDGVTLRDIVHTE--GPMTPKRAIEVIADACQALNFSH---QNGII 133

Query: 683 LLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG-SLSTVAGSVGYIPPEYAYTMRVTM 741
             D+   NI + +    ++ D  + + I  S ++    + V G+  Y+ PE A    V  
Sbjct: 134 HRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDA 193

Query: 742 AGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQM 801
             +VYS G +L E+LTG+     G+       ++  +           +S    AV  + 
Sbjct: 194 RSDVYSLGCVLYEVLTGEPPF-TGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKA 252

Query: 802 LTVLKVAVACVSVSPEARPK-MKSVLRMLLNAR 833
           L          + +PE R +    +   L+   
Sbjct: 253 L----------AKNPENRYQTAAEMRADLVRVH 275

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  110 bits (275), Expect = 1e-26
 Identities = 49/264 (18%), Positives = 91/264 (34%), Gaps = 27/264 (10%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           F   ++     +G ++  K +    +           KE++ +  L +  ++        
Sbjct: 39  FGVVHRVTERATGNNFAAKFVMTPHE----SDKETVRKEIQTMSVLRHPTLVNLHDAFED 94

Query: 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL 686
            +   + YE+   G LF+ +     N +           V +GL  +H    N  + LDL
Sbjct: 95  DNEMVMIYEFMSGGELFEKVADE-HNKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDL 150

Query: 687 STRNIFLKSLKEPQI--GDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGN 744
              NI   + +  ++   D  L   +DP +S        G+  +  PE A    V    +
Sbjct: 151 KPENIMFTTKRSNELKLIDFGLTAHLDPKQSV---KVTTGTAEFAAPEVAEGKPVGYYTD 207

Query: 745 VYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD-KLDHILDFNVSRTSLAVRSQMLT 803
           ++S GV+   LL+G +     N+     LRN    D  +D      +S        ++L 
Sbjct: 208 MWSVGVLSYILLSGLSPFGGENDDE--TLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLL 265

Query: 804 VLKVAVACVSVSPEARPKMKSVLR 827
                       P  R  +   L 
Sbjct: 266 ----------ADPNTRMTIHQALE 279

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score =  109 bits (274), Expect = 2e-26
 Identities = 42/263 (15%), Positives = 89/263 (33%), Gaps = 25/263 (9%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           F   ++ V   +G  +  K +N    +      +    E+ ++ +L +  ++        
Sbjct: 42  FGVVHRCVEKATGRVFVAKFINTPYPL----DKYTVKNEISIMNQLHHPKLINLHDAFED 97

Query: 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL 686
                L  E+   G LFD +    +  +  A   +      +GL  +H    + I+ LD+
Sbjct: 98  KYEMVLILEFLSGGELFDRIAAE-DYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDI 153

Query: 687 STRNIFLKSLKEPQI--GDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGN 744
              NI  ++ K   +   D  L   ++P +          +  +  PE      V    +
Sbjct: 154 KPENIMCETKKASSVKIIDFGLATKLNPDEIV---KVTTATAEFAAPEIVDREPVGFYTD 210

Query: 745 VYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTV 804
           +++ GV+   LL+G +    G +  + +        + D     +VS  +      +L  
Sbjct: 211 MWAIGVLGYVLLSGLSPF-AGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQ- 268

Query: 805 LKVAVACVSVSPEARPKMKSVLR 827
                      P  R  +   L 
Sbjct: 269 ---------KEPRKRLTVHDALE 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 5e-26
 Identities = 61/262 (23%), Positives = 98/262 (37%), Gaps = 6/262 (2%)

Query: 165 SVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLR 224
           +VP GI    + + L  N++  V      +  NL  + L  N+L        +   +  +
Sbjct: 25  AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ 84

Query: 225 --LGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGS 282
             L  N  +  +  ATF  L +L  L LD      + P       +L  L L  N L   
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144

Query: 283 LPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLV 342
                  LG L  + L  N++S      F  L  L  + +  N ++   P    +L  L+
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 343 NLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQI-ALNLSSNLFEGPI 401
            L L  NNL+     ++  +R+L  L+L  N         P    +     SS+     +
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSL 264

Query: 402 PTTFARLNGLEVLDLSNNRFSG 423
           P    RL G ++  L+ N   G
Sbjct: 265 P---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.3 bits (222), Expect = 2e-20
 Identities = 56/255 (21%), Positives = 98/255 (38%), Gaps = 6/255 (2%)

Query: 200 TIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMI 259
           T       L+ ++P  +     R+ L  N  I  +P+A+F +   LT L L +N    + 
Sbjct: 15  TTSCPQQGLQ-AVPVGIPAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 260 PQQLGSCRSLTLLNLAQNELNGSL-PIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLS 318
                    L  L+L+ N    S+ P     LG L  ++L    L    P  F  L  L 
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132

Query: 319 TMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGT 378
            + +  N+L         +L NL +L L  N ++     +   + SL  L L  N+++  
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 379 IPMMPPRLQIA--LNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLT 436
            P     L     L L +N          A L  L+ L L++N +  +          L 
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQ 251

Query: 437 QLLLTNNQLSGVVPK 451
           +   +++++   +P+
Sbjct: 252 KFRGSSSEVPCSLPQ 266

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.4 bits (199), Expect = 2e-17
 Identities = 61/288 (21%), Positives = 89/288 (30%), Gaps = 32/288 (11%)

Query: 93  EIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTL 152
            +P GI        I L  N +S            L +L L +N L      +   +  L
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 153 SRFAANQNKFSGSVPG---GITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLE 209
            +   + N    SV          L  L L    L  + P        LQ + L  N L+
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 210 GSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSL 269
                                   +P  TF  L  LT+L L  N  + +  +      SL
Sbjct: 143 A-----------------------LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179

Query: 270 TLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSG 329
             L L QN +    P     LG L  + L  N LS       + L+ L  + ++ N    
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239

Query: 330 SIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSG 377
              +       L       + +  S+P  +   R L  L    N L G
Sbjct: 240 DCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAG-RDLKRLAA--NDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (179), Expect = 7e-15
 Identities = 61/285 (21%), Positives = 96/285 (33%), Gaps = 14/285 (4%)

Query: 3   SCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLS 62
            C   +     +  +  L ++P     A  + +    N ++      F    +L  L L 
Sbjct: 7   VCYN-EPKVTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLH 64

Query: 63  KNKFNGFLPINLGKTKALEELVLSGNAFHGEI-PKGIADYRNLTLIDLSANNLSGSVPDR 121
            N               LE+L LS NA    + P        L  + L    L    P  
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124

Query: 122 IGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNL---D 178
              L+ L+ L L  N L      +   +  L+    + N+ S  VP    R L +L    
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLL 183

Query: 179 LSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSP--NLVRLRLGTNLLIGEIPS 236
           L  N++  V P        L T+ L  N L     + ++P   L  LRL  N  + +  +
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

Query: 237 ATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNG 281
                   L      ++     +PQ+L       L  LA N+L G
Sbjct: 244 RPL--WAWLQKFRGSSSEVPCSLPQRL---AGRDLKRLAANDLQG 283

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  106 bits (265), Expect = 5e-26
 Identities = 52/273 (19%), Positives = 91/273 (33%), Gaps = 32/273 (11%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHK-----FDKELEVLGKLSN-SNVMTP 620
            S   + +  P+   Y +K ++ +          +       KE+++L K+S   N++  
Sbjct: 16  SSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQL 75

Query: 621 LAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNP 680
                 +   +L ++   KG LFD L    +  L       I   + + +  LH      
Sbjct: 76  KDTYETNTFFFLVFDLMKKGELFDYLTE--KVTLSEKETRKIMRALLEVICALH---KLN 130

Query: 681 ILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRV- 739
           I+  DL   NI L      ++ D      +DP +       V G+  Y+ PE        
Sbjct: 131 IVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKL---REVCGTPSYLAPEIIECSMND 187

Query: 740 -----TMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS 794
                    +++S GVI+  LL G        +              L  I+  N    S
Sbjct: 188 NHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQ-----------MLMLRMIMSGNYQFGS 236

Query: 795 LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLR 827
                   TV  +    + V P+ R   +  L 
Sbjct: 237 PEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 269

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  105 bits (264), Expect = 1e-25
 Identities = 53/261 (20%), Positives = 87/261 (33%), Gaps = 20/261 (7%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           FS    A    +     IK +    K    G     + E+ VL K+ + N++       +
Sbjct: 22  FSEVILAEDKRTQKLVAIKCIA---KKALEGKEGSMENEIAVLHKIKHPNIVALDDIYES 78

Query: 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL 686
               YL  +    G LFD +    +          +   V   + +LH        L   
Sbjct: 79  GGHLYLIMQLVSGGELFDRIVE--KGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPE 136

Query: 687 STRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVY 746
           +     L    +  I D  L K+ DP      LST  G+ GY+ PE       + A + +
Sbjct: 137 NLLYYSLDEDSKIMISDFGLSKMEDPGSV---LSTACGTPGYVAPEVLAQKPYSKAVDCW 193

Query: 747 SFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLK 806
           S GVI   LL G          AK   +    + + D     ++S ++      ++    
Sbjct: 194 SIGVIAYILLCGYPPF-YDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLME--- 249

Query: 807 VAVACVSVSPEARPKMKSVLR 827
                    PE R   +  L+
Sbjct: 250 -------KDPEKRFTCEQALQ 263

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  103 bits (257), Expect = 8e-25
 Identities = 57/291 (19%), Positives = 103/291 (35%), Gaps = 38/291 (13%)

Query: 165 SVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLR 224
            VP  +      LDL  NK+  +   D  +  NL T+ L  N +    P           
Sbjct: 24  KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG---------- 73

Query: 225 LGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLP 284
                         F  L KL  L L  N    +  +   + + L +      ++  S+ 
Sbjct: 74  -------------AFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVF 120

Query: 285 IQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNL 344
             L  + ++++    L K SG     F  +K LS + I+  +++        +LT L   
Sbjct: 121 NGLNQMIVVELGTNPL-KSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL--- 176

Query: 345 NLRQNNLNGSIPNSITNMRSLIELQLGGNQLSG---TIPMMPPRLQIALNLSSNLFEGPI 401
           +L  N +      S+  + +L +L L  N +S          P L+     ++ L    +
Sbjct: 177 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--KV 234

Query: 402 PTTFARLNGLEVLDLSNNRFSG------EIPQLLAQMPTLTQLLLTNNQLS 446
           P   A    ++V+ L NN  S         P    +  + + + L +N + 
Sbjct: 235 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 93.6 bits (231), Expect = 2e-21
 Identities = 63/277 (22%), Positives = 111/277 (40%), Gaps = 10/277 (3%)

Query: 197 NLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFT 256
           +L+ +  S   LE  +P+++ P+   L L  N  I EI    F +L+ L  L L NN  +
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 257 GMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKL 316
            + P        L  L L++N+L         +L  L+V   ++ K+   + +  +Q+ +
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 128

Query: 317 LSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLS 376
           +        S SG        +  L  + +   N+  +IP  +    SL EL L GN+++
Sbjct: 129 VELGTNPLKS-SGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT 184

Query: 377 GTIPMMPPRLQIA--LNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPT 434
                    L     L LS N        + A    L  L L+NN+   ++P  LA    
Sbjct: 185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY 243

Query: 435 LTQLLLTNNQLSGVVPK-FSKWVSVDTTGNLKLINVT 470
           +  + L NN +S +    F          +   +++ 
Sbjct: 244 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 280

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.1 bits (209), Expect = 2e-18
 Identities = 58/298 (19%), Positives = 104/298 (34%), Gaps = 11/298 (3%)

Query: 10  LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGF 69
           L+++  S   L  +P  +      +LD  +N +    +  F  L +L +L L  NK +  
Sbjct: 12  LRVVQCSDLGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 70  LPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLE 129
            P        LE L LS N       K     + L + +     +  SV + + ++  +E
Sbjct: 71  SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 130

Query: 130 VLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIP 189
            L  +     G    +   +  LS         + ++P G+   L  L L  NK+  V  
Sbjct: 131 -LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVDA 188

Query: 190 IDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLE 249
             L    NL  + LS N +      +++       L  N              + +  + 
Sbjct: 189 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVY 248

Query: 250 LDNNSFTG------MIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMN-LQL 300
           L NN+ +         P       S + ++L  N +     IQ  +   + V   +QL
Sbjct: 249 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ-YWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.0 bits (201), Expect = 2e-17
 Identities = 63/322 (19%), Positives = 115/322 (35%), Gaps = 49/322 (15%)

Query: 103 NLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKF 162
           +L ++  S   L   VP  +       +L L  N +         ++  L          
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNL---------- 57

Query: 163 SGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVR 222
                         L L  NK+  + P        L+ + LS N L+  LP+ M   L  
Sbjct: 58  ------------HTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQE 104

Query: 223 LRLGTNLLIGEIPSATFTSLEKLTYLELDN--NSFTGMIPQQLGSCRSLTLLNLAQNELN 280
           LR+  N  I ++  + F  L ++  +EL       +G+        + L+ + +A   + 
Sbjct: 105 LRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 163

Query: 281 GSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTN 340
               I  G    L  ++L  NK++    +    L  L+ + +S+NS+S      L+N  +
Sbjct: 164 ---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 220

Query: 341 LVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGP 400
           L  L+L  N L   +P  + + + +  + L  N +S               + SN F   
Sbjct: 221 LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS--------------AIGSNDFCP- 264

Query: 401 IPTTFARLNGLEVLDLSNNRFS 422
            P    +      + L +N   
Sbjct: 265 -PGYNTKKASYSGVSLFSNPVQ 285

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 1e-24
 Identities = 40/263 (15%), Positives = 91/263 (34%), Gaps = 26/263 (9%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           F   ++ V   S  +Y  K +                KE+ +L    + N++       +
Sbjct: 18  FGIVHRCVETSSKKTYMAKFVKVKGT-----DQVLVKKEISILNIARHRNILHLHESFES 72

Query: 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL 686
            +   + +E+     +F+ ++      L+     S    V + L FLH   S+ I   D+
Sbjct: 73  MEELVMIFEFISGLDIFERINTS-AFELNEREIVSYVHQVCEALQFLH---SHNIGHFDI 128

Query: 687 STRNIFLKSLKEPQ--IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGN 744
              NI  ++ +     I +    + + P  +      +  +  Y  PE      V+ A +
Sbjct: 129 RPENIIYQTRRSSTIKIIEFGQARQLKPGDNF---RLLFTAPEYYAPEVHQHDVVSTATD 185

Query: 745 VYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTV 804
           ++S G ++  LL+G                    Q  +++I++   +    A +   +  
Sbjct: 186 MWSLGTLVYVLLSGINPFLAETN-----------QQIIENIMNAEYTFDEEAFKEISIEA 234

Query: 805 LKVAVACVSVSPEARPKMKSVLR 827
           +      +    ++R      L+
Sbjct: 235 MDFVDRLLVKERKSRMTASEALQ 257

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score =  101 bits (251), Expect = 2e-23
 Identities = 86/394 (21%), Positives = 142/394 (36%), Gaps = 30/394 (7%)

Query: 51  DELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLS 110
             L       L K        ++      +  L             G+    NLT I+ S
Sbjct: 19  TALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFS 74

Query: 111 ANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGI 170
            N L+   P  +  L+KL  ++++ N +    P +  +  T      NQ      +    
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 171 TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLL 230
                 L  +         I  +S  +  T    ++            NL  L       
Sbjct: 133 NLNRLELSSNT--------ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 184

Query: 231 IGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSL 290
                 +    L  L  L   NN  + + P  +    +L  L+L  N+L       L SL
Sbjct: 185 NKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASL 240

Query: 291 GILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNN 350
             L  ++L  N++S   P   S L  L+ + +  N +S   P  L+ LT L NL L +N 
Sbjct: 241 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ 296

Query: 351 LNGSIPNSITNMRSLIELQLGGNQLSGTIPMMP-PRLQIALNLSSNLFEGPIPTTFARLN 409
           L     + I+N+++L  L L  N +S   P+    +LQ  L  ++N       ++ A L 
Sbjct: 297 LE--DISPISNLKNLTYLTLYFNNISDISPVSSLTKLQR-LFFANNKVSDV--SSLANLT 351

Query: 410 GLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNN 443
            +  L   +N+ S   P  LA +  +TQL L + 
Sbjct: 352 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 98.5 bits (244), Expect = 1e-22
 Identities = 81/376 (21%), Positives = 137/376 (36%), Gaps = 34/376 (9%)

Query: 13  LNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPI 72
               K  +    +      +  L      +     +++  L +L  +N S N+     P 
Sbjct: 27  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEY--LNNLTQINFSNNQLTDITP- 83

Query: 73  NLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDR----------- 121
            L     L +++++ N      P           +  +       + +            
Sbjct: 84  -LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 142

Query: 122 ----IGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNL 177
               I  LS L  L   +          LA++TTL R   + NK S          L +L
Sbjct: 143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 202

Query: 178 DLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSA 237
             + N++  + P+ +    NL  + L+ N L+         NL  L L  N +    P  
Sbjct: 203 IATNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-- 258

Query: 238 TFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMN 297
             + L KLT L+L  N  + + P  L    +LT L L +N+L    PI   +L  L  + 
Sbjct: 259 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLT 313

Query: 298 LQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPN 357
           L  N +S   P   S L  L  +  + N +S    S L+NLTN+  L+   N ++   P 
Sbjct: 314 LYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP- 368

Query: 358 SITNMRSLIELQLGGN 373
            + N+  + +L L   
Sbjct: 369 -LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 83.5 bits (205), Expect = 1e-17
 Identities = 71/385 (18%), Positives = 126/385 (32%), Gaps = 74/385 (19%)

Query: 102 RNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNK 161
                  L   N++ +V     +L ++  L      +      S+  +  L+        
Sbjct: 22  AEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI-----KSIDGVEYLNN------- 67

Query: 162 FSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLV 221
                       L  ++ S N+L  + P+  L    L  I ++ N +    P     NL 
Sbjct: 68  ------------LTQINFSNNQLTDITPLKNL--TKLVDILMNNNQIADITPLANLTNLT 113

Query: 222 RLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNG 281
            L L  N +    P    T+L +L       +  + +         S          L  
Sbjct: 114 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLAN 173

Query: 282 SLPIQL--------------GSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSL 327
              ++                 L  L+ +    N++S   P        L  ++++ N L
Sbjct: 174 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQL 231

Query: 328 SGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQ 387
                  L++LTNL +L+L  N ++   P  ++ +  L EL+LG NQ+S   P+      
Sbjct: 232 KD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTAL 287

Query: 388 IA----------------------LNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEI 425
                                   L L  N      P   + L  L+ L  +NN+ S   
Sbjct: 288 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-- 343

Query: 426 PQLLAQMPTLTQLLLTNNQLSGVVP 450
              LA +  +  L   +NQ+S + P
Sbjct: 344 VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.4 bits (158), Expect = 8e-12
 Identities = 32/171 (18%), Positives = 57/171 (33%), Gaps = 28/171 (16%)

Query: 10  LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGF 69
           L  L+ + N+L  + T      L  LD ++N ++    L    L  L  L L  N+ +  
Sbjct: 221 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNI 278

Query: 70  LPINLGKTK--------------------ALEELVLSGNAFHGEIPKGIADYRNLTLIDL 109
            P+                           L  L L  N      P  ++    L  +  
Sbjct: 279 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 336

Query: 110 SANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQN 160
           + N +S      +  L+ +  L    N +    P  LA++T +++   N  
Sbjct: 337 ANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.2 bits (134), Expect = 8e-09
 Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 1   MQSCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLN 60
           +     +  L  L    N +  +   +    L+ L F++N ++   +L    L ++  L+
Sbjct: 300 ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLA--NLTNINWLS 357

Query: 61  LSKNKFNGFLPINLGKTKALEELVLSGNA 89
              N+ +   P  L     + +L L+  A
Sbjct: 358 AGHNQISDLTP--LANLTRITQLGLNDQA 384

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.1 bits (246), Expect = 2e-23
 Identities = 51/267 (19%), Positives = 92/267 (34%), Gaps = 26/267 (9%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWS--DKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYV 624
           F+   K     +G+ Y  K +         +  S    ++E+ +L ++ + NV+T     
Sbjct: 23  FAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVY 82

Query: 625 LASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLL 684
                  L  E    G LFD      + +L           +  G+ +LH   S  I   
Sbjct: 83  ENKTDVILILELVAGGELFD--FLAEKESLTEEEATEFLKQILNGVYYLH---SLQIAHF 137

Query: 685 DLSTRNIFLKSLKEPQ----IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVT 740
           DL   NI L     P+    I D  L   ID          + G+  ++ PE      + 
Sbjct: 138 DLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEF---KNIFGTPEFVAPEIVNYEPLG 194

Query: 741 MAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQ 800
           +  +++S GVI   LL+G +      +       ++   +  D     N S  +     +
Sbjct: 195 LEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFS-NTSALAKDFIRR 253

Query: 801 MLTVLKVAVACVSVSPEARPKMKSVLR 827
           +L             P+ R  ++  L+
Sbjct: 254 LLV----------KDPKKRMTIQDSLQ 270

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 98.4 bits (244), Expect = 4e-23
 Identities = 31/272 (11%), Positives = 73/272 (26%), Gaps = 28/272 (10%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           F   Y    + +G    IK      K      H +   E ++   +     +  + +  A
Sbjct: 20  FGDIYLGTDIAAGEEVAIKLECVKTK------HPQLHIESKIYKMMQGGVGIPTIRWCGA 73

Query: 627 -SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLD 685
             D   +  E                      +   +A  +   + ++H   S   +  D
Sbjct: 74  EGDYNVMVMELLGPSLEDLFNFC--SRKFSLKTVLLLADQMISRIEYIH---SKNFIHRD 128

Query: 686 LSTRNIFLKSL---KEPQIGDIELCKVIDPSKSTG-----SLSTVAGSVGYIPPEYAYTM 737
           +   N  +          I D  L K    +++           + G+  Y        +
Sbjct: 129 VKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGI 188

Query: 738 RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAV 797
             +   ++ S G +L+    G           K        + K+   ++          
Sbjct: 189 EQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEF 248

Query: 798 RSQMLTVLKVAVACVSVSPEARPKMKSVLRML 829
            + +         C S+  + +P    + ++ 
Sbjct: 249 ATYLN-------FCRSLRFDDKPDYSYLRQLF 273

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.2 bits (244), Expect = 9e-23
 Identities = 43/269 (15%), Positives = 84/269 (31%), Gaps = 31/269 (11%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS-NVMTPLAYVL 625
                +     +   + +K L             K  +E+E+  + S   +++  +    
Sbjct: 25  NGKVLQIFNKRTQEKFALKMLQ---------DCPKARREVELHWRASQCPHIVRIVDVYE 75

Query: 626 ASDSA----YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPI 681
              +      +  E    G LF  +    + A        I   + + + +LH   S  I
Sbjct: 76  NLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINI 132

Query: 682 LLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTM 741
              D+   N+   S +   I  +        + S  SL+T   +  Y+ PE     +   
Sbjct: 133 AHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDK 192

Query: 742 AGNVYSFGVILLELLTGKTAVNQGNELA---KWVLRNSAQQDKLDHILDFNVSRTSLAVR 798
           + +++S GVI+  LL G       + LA       R    Q +  +     VS     + 
Sbjct: 193 SCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLI 252

Query: 799 SQMLTVLKVAVACVSVSPEARPKMKSVLR 827
             +L             P  R  +   + 
Sbjct: 253 RNLLK----------TEPTQRMTITEFMN 271

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.5 bits (229), Expect = 6e-21
 Identities = 52/264 (19%), Positives = 94/264 (35%), Gaps = 29/264 (10%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGK-LSNSNVMTPLAYVL 625
           F   + A    +   + IK L   D +           E  VL     +  +        
Sbjct: 15  FGKVFLAEFKKTNQFFAIKALK-KDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQ 73

Query: 626 ASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLD 685
             ++ +   EY   G L   +  C  +  D +     A  +  GL FLH   S  I+  D
Sbjct: 74  TKENLFFVMEYLNGGDLMYHIQSC--HKFDLSRATFYAAEIILGLQFLH---SKGIVYRD 128

Query: 686 LSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNV 745
           L   NI L      +I D  +CK      +  +  T  G+  YI PE     +   + + 
Sbjct: 129 LKLDNILLDKDGHIKIADFGMCKENMLGDAKTN--TFCGTPDYIAPEILLGQKYNHSVDW 186

Query: 746 YSFGVILLELLTGKTAVNQGN--ELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLT 803
           +SFGV+L E+L G++  +  +  EL   +  ++    +        + + +  +  ++  
Sbjct: 187 WSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPR-------WLEKEAKDLLVKLFV 239

Query: 804 VLKVAVACVSVSPEARPKMKSVLR 827
                       PE R  ++  +R
Sbjct: 240 ----------REPEKRLGVRGDIR 253

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 91.4 bits (226), Expect = 8e-21
 Identities = 28/277 (10%), Positives = 73/277 (26%), Gaps = 30/277 (10%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           F   ++   + +     IK         +     +   E      L+    +  + Y   
Sbjct: 18  FGVIFEGTNLLNNQQVAIKFEP------RRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQ 71

Query: 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL 686
                +        +L D+L  C        +    A  +   +  +H      ++  D+
Sbjct: 72  EGLHNVLVIDLLGPSLEDLLDLC-GRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDI 127

Query: 687 STRNIFLKSLKEPQIG-----DIELCKVIDPSKSTG-----SLSTVAGSVGYIPPEYAYT 736
              N  +              D  + K      +           ++G+  Y+       
Sbjct: 128 KPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLG 187

Query: 737 MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLA 796
              +   ++ + G + +  L G              L+ +  + K + I +   S     
Sbjct: 188 REQSRRDDLEALGHVFMYFLRGSL--------PWQGLKAATNKQKYERIGEKKQSTPLRE 239

Query: 797 VRSQMLTVL-KVAVACVSVSPEARPKMKSVLRMLLNA 832
           + +       K      +++ +A P    +  +    
Sbjct: 240 LCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKV 276

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.0 bits (225), Expect = 3e-20
 Identities = 47/271 (17%), Positives = 91/271 (33%), Gaps = 18/271 (6%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           +     A    + +   IKK++            +  +E+++L +  + N++     + A
Sbjct: 21  YGMVCSAYDNVNKVRVAIKKIS---PFEHQTYCQRTLREIKILLRFRHENIIGINDIIRA 77

Query: 627 SDSAYLFY----EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPIL 682
                +       +     L+ +L       L           + +GL ++H   S  +L
Sbjct: 78  PTIEQMKDVYLVTHLMGADLYKLLK---TQHLSNDHICYFLYQILRGLKYIH---SANVL 131

Query: 683 LLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSL-STVAGSVGYIPPEYAYT-MRVT 740
             DL   N+ L +  + +I D  L +V DP        +    +  Y  PE        T
Sbjct: 132 HRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYT 191

Query: 741 MAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQ 800
            + +++S G IL E+L+ +      +      L +           D N      A    
Sbjct: 192 KSIDIWSVGCILAEMLSNRPIFPGKHY--LDQLNHILGILGSPSQEDLNCIINLKARNYL 249

Query: 801 MLTVLKVAVACVSVSPEARPKMKSVLRMLLN 831
           +    K  V    + P A  K   +L  +L 
Sbjct: 250 LSLPHKNKVPWNRLFPNADSKALDLLDKMLT 280

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.1 bits (220), Expect = 5e-20
 Identities = 52/277 (18%), Positives = 97/277 (35%), Gaps = 23/277 (8%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIF-QLGSHHKFDKELEVLGKLSNSNVMTPLAYVL 625
           F+T YKA    +     IKK+    +   + G +    +E+++L +LS+ N++  L    
Sbjct: 11  FATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFG 70

Query: 626 ASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLD 685
              +  L +++        +    L         Y   +   QGL +LH    + IL  D
Sbjct: 71  HKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAY--MLMTLQGLEYLH---QHWILHRD 125

Query: 686 LSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRV-TMAGN 744
           L   N+ L      ++ D  L K         +      +  Y  PE  +  R+  +  +
Sbjct: 126 LKPNNLLLDENGVLKLADFGLAKSFGSPNRAYT--HQVVTRWYRAPELLFGARMYGVGVD 183

Query: 745 VYSFGVILLELLTGK------TAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVR 798
           +++ G IL ELL         + ++Q   + + +   + +Q      L   V+  S    
Sbjct: 184 MWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGI 243

Query: 799 SQMLTVLKVAVA-------CVSVSPEARPKMKSVLRM 828
                                  +P AR      L+M
Sbjct: 244 PLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM 280

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.4 bits (221), Expect = 6e-20
 Identities = 42/203 (20%), Positives = 74/203 (36%), Gaps = 12/203 (5%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           F   +      +G  Y +K L   + + +L      + E  +L  +++  ++        
Sbjct: 17  FGRVHLIRSRHNGRYYAMKVLK-KEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQD 75

Query: 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL 686
           +   ++  +Y   G LF +L          A  Y      A+    L    S  I+  DL
Sbjct: 76  AQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFY-----AAEVCLALEYLHSKDIIYRDL 130

Query: 687 STRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVY 746
              NI L      +I D    K +     T     + G+  YI PE   T     + + +
Sbjct: 131 KPENILLDKNGHIKITDFGFAKYVPDVTYT-----LCGTPDYIAPEVVSTKPYNKSIDWW 185

Query: 747 SFGVILLELLTGKTAVNQGNELA 769
           SFG+++ E+L G T     N + 
Sbjct: 186 SFGILIYEMLAGYTPFYDSNTMK 208

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.2 bits (218), Expect = 8e-20
 Identities = 46/267 (17%), Positives = 88/267 (32%), Gaps = 36/267 (13%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWS--DKIFQLGSHHKFDKELEVLGKLSN--SNVMTPLA 622
           F + Y  + +   +   IK +         +L +  +   E+ +L K+S+  S V+  L 
Sbjct: 17  FGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLD 76

Query: 623 YVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPIL 682
           +    DS  L  E                 AL      S    V + +   H   +  +L
Sbjct: 77  WFERPDSFVLILERPEPVQDLFDFI-TERGALQEELARSFFWQVLEAVRHCH---NCGVL 132

Query: 683 LLDLSTRNIFL-KSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRV-T 740
             D+   NI +  +  E ++ D     ++  +  T       G+  Y PPE+    R   
Sbjct: 133 HRDIKDENILIDLNRGELKLIDFGSGALLKDTVYT----DFDGTRVYSPPEWIRYHRYHG 188

Query: 741 MAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQ 800
            +  V+S G++L +++ G        E+ +  +                VS     +   
Sbjct: 189 RSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQV-----------FFRQRVSSECQHLIRW 237

Query: 801 MLTVLKVAVACVSVSPEARPKMKSVLR 827
            L           + P  RP  + +  
Sbjct: 238 CLA----------LRPSDRPTFEEIQN 254

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.4 bits (218), Expect = 1e-19
 Identities = 45/281 (16%), Positives = 93/281 (33%), Gaps = 29/281 (10%)

Query: 568 FSTYYKA--VMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS---NVMTPLA 622
           +   +KA  +   G    +K++    +  + G      +E+ VL  L      NV+    
Sbjct: 20  YGKVFKARDLKNGGRFVALKRVR--VQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFD 77

Query: 623 YVLASDSAYLFYEYAP----KGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTS 678
               S +                L   L    E  +   +   +   + +GL FLH   S
Sbjct: 78  VCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH---S 134

Query: 679 NPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMR 738
           + ++  DL  +NI + S  + ++ D  L ++     +    ++V  ++ Y  PE      
Sbjct: 135 HRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMAL---TSVVVTLWYRAPEVLLQSS 191

Query: 739 VTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVR 798
                +++S G I  E+   K      +++ +            +     +V+    A  
Sbjct: 192 YATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFH 251

Query: 799 SQMLTVLKVAVACVS------------VSPEARPKMKSVLR 827
           S+    ++  V  +              +P  R    S L 
Sbjct: 252 SKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 292

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.3 bits (213), Expect = 1e-18
 Identities = 42/241 (17%), Positives = 76/241 (31%), Gaps = 15/241 (6%)

Query: 568 FSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFD--KELEVLGKLSNSNVMTPLAYV 624
           F   Y      +G  Y +K L+      + G     +    L ++       ++      
Sbjct: 17  FGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAF 76

Query: 625 LASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLL 684
              D      +    G L   L      +      Y  A  +  GL  +H   +  ++  
Sbjct: 77  HTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFY--AAEIILGLEHMH---NRFVVYR 131

Query: 685 DLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAG 743
           DL   NI L      +I D+ L       K         G+ GY+ PE     +    + 
Sbjct: 132 DLKPANILLDEHGHVRISDLGLACDFSKKKPH----ASVGTHGYMAPEVLQKGVAYDSSA 187

Query: 744 NVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLT 803
           + +S G +L +LL G +   Q     K  +        ++  L  + S    ++   +L 
Sbjct: 188 DWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVE--LPDSFSPELRSLLEGLLQ 245

Query: 804 V 804
            
Sbjct: 246 R 246

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 84.2 bits (207), Expect = 2e-18
 Identities = 44/274 (16%), Positives = 92/274 (33%), Gaps = 22/274 (8%)

Query: 568 FSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS 627
           +   YKA    G ++ +KK+    +    G      +E+ +L +L +SN++     +   
Sbjct: 15  YGVVYKAQNNYGETFALKKIRLEKE--DEGIPSTTIREISILKELKHSNIVKLYDVIHTK 72

Query: 628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLS 687
               L +E+  +     +     E  L+  +  S  + +  G+A+ H      +L  DL 
Sbjct: 73  KRLVLVFEHLDQDLKKLLDVC--EGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLK 127

Query: 688 TRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYS 747
            +N+ +    E +I D  L +             +       P     + + +   +++S
Sbjct: 128 PQNLLINREGELKIADFGLARAFGIPVRK-YTHEIVTLWYRAPDVLMGSKKYSTTIDIWS 186

Query: 748 FGVILLELLTGKTAVNQGNE----------LAKWVLRNSAQQDKLDHILDFNVSRTSLAV 797
            G I  E++ G       +E          L     +N     +L            L  
Sbjct: 187 VGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPW 246

Query: 798 RSQMLTVLKVAV----ACVSVSPEARPKMKSVLR 827
            S +  + +  +      + + P  R   K  L 
Sbjct: 247 ESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE 280

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 83.3 bits (204), Expect = 6e-18
 Identities = 68/282 (24%), Positives = 109/282 (38%), Gaps = 26/282 (9%)

Query: 167 PGGITRFLRNLDLSYNKLLGVIPI--DLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLR 224
               T  + NLDLS   L    PI   L + P L  + +                     
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN----------------- 87

Query: 225 LGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLP 284
              NL+    P+    +  +L YL + + + +G IP  L   ++L  L+ + N L+G+LP
Sbjct: 88  ---NLVGPIPPAIAKLT--QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142

Query: 285 IQLGSLGILQVMNLQLNKLSGEI-PSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVN 343
             + SL  L  +    N++SG I  S  S  KL ++M IS N L+G IP   +NL     
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV 202

Query: 344 LNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPT 403
              R      +     ++  +        +       +   +    L+L +N   G +P 
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262

Query: 404 TFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQL 445
              +L  L  L++S N   GEIPQ    +         NN+ 
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 77.1 bits (188), Expect = 7e-16
 Identities = 64/283 (22%), Positives = 110/283 (38%), Gaps = 30/283 (10%)

Query: 103 NLTLIDLSANNLSG--SVPDRIGELSKLEVLILSAN-NLDGRLPTSLASITTLSRFAANQ 159
            +  +DLS  NL     +P  +  L  L  L +    NL G +P ++A +T         
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT--------- 101

Query: 160 NKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS-- 217
                         L  L +++  + G IP  L     L T+D S N L G+LP ++S  
Sbjct: 102 -------------QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 218 PNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQN 277
           PNLV +    N + G IP +  +  +  T + +  N  TG IP    +     +      
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM 208

Query: 278 ELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSN 337
               +  +        ++   + +        +    K L+ +++  N + G++P  L+ 
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSL--AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 338 LTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIP 380
           L  L +LN+  NNL G IP    N++         N+     P
Sbjct: 267 LKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 74.4 bits (181), Expect = 6e-15
 Identities = 57/260 (21%), Positives = 90/260 (34%), Gaps = 6/260 (2%)

Query: 213 PQNMSPNLVRLRLGTNLLIGEIP-SATFTSLEKLTYLELDNN-SFTGMIPQQLGSCRSLT 270
               +  +  L L    L    P  ++  +L  L +L +    +  G IP  +     L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 271 LLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGS 330
            L +    ++G++P  L  +  L  ++   N LSG +P   S L  L  +    N +SG+
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 331 IPSFLSNLTNLVNLNLRQNN-LNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIA 389
           IP    + + L        N L G IP +  N+                  +        
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 390 LNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVV 449
               +                L  LDL NNR  G +PQ L Q+  L  L ++ N L G +
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 450 PKFSKWVSVDT---TGNLKL 466
           P+       D      N  L
Sbjct: 285 PQGGNLQRFDVSAYANNKCL 304

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 74.0 bits (180), Expect = 9e-15
 Identities = 71/261 (27%), Positives = 106/261 (40%), Gaps = 6/261 (2%)

Query: 53  LVSLKSLNLSKNKFNGFLPI--NLGKTKALEELVLSGNA-FHGEIPKGIADYRNLTLIDL 109
              + +L+LS        PI  +L     L  L + G     G IP  IA    L  + +
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 110 SANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPG- 168
           +  N+SG++PD + ++  L  L  S N L G LP S++S+  L     + N+ SG++P  
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 169 -GITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGT 227
            G    L          L        ++ NL  +DLS NMLEG        +    ++  
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 228 NLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQL 287
                          + L  L+L NN   G +PQ L   + L  LN++ N L G +P Q 
Sbjct: 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QG 287

Query: 288 GSLGILQVMNLQLNKLSGEIP 308
           G+L    V     NK     P
Sbjct: 288 GNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 69.8 bits (169), Expect = 2e-13
 Identities = 55/260 (21%), Positives = 88/260 (33%), Gaps = 8/260 (3%)

Query: 32  LEVLDFSSNNLNGNINL--QFDELVSLKSLNLSKN-KFNGFLPINLGKTKALEELVLSGN 88
           +  LD S  NL     +      L  L  L +       G +P  + K   L  L ++  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 89  AFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLAS 148
              G IP  ++  + L  +D S N LSG++P  I  L  L  +    N + G +P S  S
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 149 ITTLSRFAA---NQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSV 205
            + L        N+                              +        +      
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 206 NMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGS 265
           ++        +S NL  L L  N + G +P    T L+ L  L +  N+  G IP Q G+
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCGEIP-QGGN 289

Query: 266 CRSLTLLNLAQNELNGSLPI 285
            +   +   A N+     P+
Sbjct: 290 LQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 3/134 (2%)

Query: 252 NNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPI--QLGSLGILQVMNLQLN-KLSGEIP 308
           N ++ G++         +  L+L+   L    PI   L +L  L  + +     L G IP
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 309 SQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIEL 368
              ++L  L  + I+  ++SG+IP FLS +  LV L+   N L+G++P SI+++ +L+ +
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 369 QLGGNQLSGTIPMM 382
              GN++SG IP  
Sbjct: 155 TFDGNRISGAIPDS 168

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.6 bits (203), Expect = 9e-18
 Identities = 47/275 (17%), Positives = 95/275 (34%), Gaps = 22/275 (8%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           +   YKA    +G    +KK+    +    G      +E+ +L +L++ N++  L  +  
Sbjct: 15  YGVVYKARNKLTGEVVALKKIRLDTE--TEGVPSTAIREISLLKELNHPNIVKLLDVIHT 72

Query: 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL 686
            +  YL +E+  +  L   +       +      S    + QGLAF H   S+ +L  DL
Sbjct: 73  ENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDL 128

Query: 687 STRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVY 746
             +N+ + +    ++ D  L +       T +   V       P         + A +++
Sbjct: 129 KPQNLLINTEGAIKLADFGLARAFGVPVRTYT-HEVVTLWYRAPEILLGCKYYSTAVDIW 187

Query: 747 SFGVILLELLTGKTAVNQGNELA--KWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTV 804
           S G I  E++T +      +E+     + R     D++      ++     +        
Sbjct: 188 SLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQD 247

Query: 805 LKVAV------------ACVSVSPEARPKMKSVLR 827
               V              +   P  R   K+ L 
Sbjct: 248 FSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA 282

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.9 bits (204), Expect = 1e-17
 Identities = 41/194 (21%), Positives = 66/194 (34%), Gaps = 9/194 (4%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           F          +G  Y +K L   + I           E  VL    +  +         
Sbjct: 18  FGKVILVREKATGRYYAMKILR-KEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQT 76

Query: 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL 686
            D      EYA  G LF  L        + A  Y      A+ ++ L    S  ++  D+
Sbjct: 77  HDRLCFVMEYANGGELFFHLSRERVFTEERARFY-----GAEIVSALEYLHSRDVVYRDI 131

Query: 687 STRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVY 746
              N+ L      +I D  LCK      +T  + T  G+  Y+ PE         A + +
Sbjct: 132 KLENLMLDKDGHIKITDFGLCKEGISDGAT--MKTFCGTPEYLAPEVLEDNDYGRAVDWW 189

Query: 747 SFGVILLELLTGKT 760
             GV++ E++ G+ 
Sbjct: 190 GLGVVMYEMMCGRL 203

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.6 bits (203), Expect = 1e-17
 Identities = 47/276 (17%), Positives = 96/276 (34%), Gaps = 20/276 (7%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNV--------M 618
           F   +KA    +G    +KK+   ++  + G      +E+++L  L + NV         
Sbjct: 23  FGEVFKARHRKTGQKVALKKVLMENE--KEGFPITALREIKILQLLKHENVVNLIEICRT 80

Query: 619 TPLAYVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTS 678
               Y     S YL +++        + +  ++  L    R      +   L  L+    
Sbjct: 81  KASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRV-----MQMLLNGLYYIHR 135

Query: 679 NPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKST--GSLSTVAGSVGYIPPEYAYT 736
           N IL  D+   N+ +      ++ D  L +    +K++     +    ++ Y PPE    
Sbjct: 136 NKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLG 195

Query: 737 MR-VTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSL 795
            R      +++  G I+ E+ T    +    E  +  L +         +   NV    L
Sbjct: 196 ERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWP-NVDNYEL 254

Query: 796 AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN 831
             + +++   K  V     +    P    ++  LL 
Sbjct: 255 YEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLV 290

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (201), Expect = 4e-17
 Identities = 43/201 (21%), Positives = 74/201 (36%), Gaps = 22/201 (10%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           F   Y+A    SG    IKK+   DK F        ++EL+++ KL + N++    +  +
Sbjct: 33  FGVVYQAKLCDSGELVAIKKVL-QDKRF-------KNRELQIMRKLDHCNIVRLRYFFYS 84

Query: 627 SDSA------YLFYEYAPKGTLFDVLHGCLEN-ALDWASRYSIAVGVAQGLAFLHGFTSN 679
           S          L  +Y P+       H       L           + + LA++H   S 
Sbjct: 85  SGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---SF 141

Query: 680 PILLLDLSTRNIFL-KSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMR 738
            I   D+  +N+ L       ++ D    K +   +   S   +       P        
Sbjct: 142 GICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVS--YICSRYYRAPELIFGATD 199

Query: 739 VTMAGNVYSFGVILLELLTGK 759
            T + +V+S G +L ELL G+
Sbjct: 200 YTSSIDVWSAGCVLAELLLGQ 220

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (189), Expect = 5e-16
 Identities = 43/276 (15%), Positives = 91/276 (32%), Gaps = 24/276 (8%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           + T +KA    +     +K++   D     G      +E+ +L +L + N++     + +
Sbjct: 15  YGTVFKAKNRETHEIVALKRVRLDDD--DEGVPSSALREICLLKELKHKNIVRLHDVLHS 72

Query: 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL 686
                L +E+  +           +   +    +     + Q L  L    S  +L  DL
Sbjct: 73  DKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSF-----LFQLLKGLGFCHSRNVLHRDL 127

Query: 687 STRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVY 746
             +N+ +    E ++ +  L +         S + V       P         + + +++
Sbjct: 128 KPQNLLINRNGELKLANFGLARAFGIPVRCYS-AEVVTLWYRPPDVLFGAKLYSTSIDMW 186

Query: 747 SFGVILLELLTGKTAVNQGN---ELAKWVLR-----NSAQQDKLDHILDFNVSRTSLAVR 798
           S G I  EL      +  GN   +  K + R        Q   +  + D+       A  
Sbjct: 187 SAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATT 246

Query: 799 SQMLTVLKVAVA-------CVSVSPEARPKMKSVLR 827
           S +  V K+           +  +P  R   +  L+
Sbjct: 247 SLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ 282

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (182), Expect = 8e-15
 Identities = 51/267 (19%), Positives = 91/267 (34%), Gaps = 14/267 (5%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           +     AV   +G    IKKL             +  +EL +L  + + NV+  L     
Sbjct: 31  YGAVCSAVDGRTGAKVAIKKLY--RPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTP 88

Query: 627 SDSAYLFYEYAPKGTLFDVLHGCL--ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLL 684
            ++   F ++           G L     L       +   + +GL ++H   +  I+  
Sbjct: 89  DETLDDFTDFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIH---AAGIIHR 145

Query: 685 DLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGN 744
           DL   N+ +    E +I D  L +  D   +      V       P      MR T   +
Sbjct: 146 DLKPGNLAVNEDCELKILDFGLARQADSEMTG----YVVTRWYRAPEVILNWMRYTQTVD 201

Query: 745 VYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTV 804
           ++S G I+ E++TGKT     + L +               +    S  +      +  +
Sbjct: 202 IWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPEL 261

Query: 805 LKVAVACVSVSPEARPKMKSVLRMLLN 831
            K   A  S+   A P   ++L  +L 
Sbjct: 262 EKKDFA--SILTNASPLAVNLLEKMLV 286

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (180), Expect = 9e-15
 Identities = 39/200 (19%), Positives = 70/200 (35%), Gaps = 13/200 (6%)

Query: 568 FSTYYKAV----MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS-NVMTPLA 622
           +   +         +G  Y +K L  +  + +  +      E +VL  +  S  ++T   
Sbjct: 37  YGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHY 96

Query: 623 YVLASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPIL 682
                   +L  +Y   G LF  L             Y     V + +  L       I+
Sbjct: 97  AFQTETKLHLILDYINGGELFTHLSQRERFTEHEVQIY-----VGEIVLALEHLHKLGII 151

Query: 683 LLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMR--VT 740
             D+   NI L S     + D  L K     ++  +     G++ Y+ P+          
Sbjct: 152 YRDIKLENILLDSNGHVVLTDFGLSKEFVADETERA-YDFCGTIEYMAPDIVRGGDSGHD 210

Query: 741 MAGNVYSFGVILLELLTGKT 760
            A + +S GV++ ELLTG +
Sbjct: 211 KAVDWWSLGVLMYELLTGAS 230

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.1 bits (181), Expect = 1e-14
 Identities = 36/193 (18%), Positives = 67/193 (34%), Gaps = 12/193 (6%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           F          SG  Y +K L+   K+ +L        E  +L  ++   ++        
Sbjct: 54  FGRVMLVKHKESGNHYAMKILD-KQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKD 112

Query: 627 SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL 686
           + + Y+  EY   G +F  L                A  +     +LH   S  ++  DL
Sbjct: 113 NSNLYMVMEYVAGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYLH---SLDLIYRDL 167

Query: 687 STRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVY 746
              N+ +      Q+ D    K +      G   T+ G+   + PE   +     A + +
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVK-----GRTWTLCGTPEALAPEIILSKGYNKAVDWW 222

Query: 747 SFGVILLELLTGK 759
           + GV++ E+  G 
Sbjct: 223 ALGVLIYEMAAGY 235

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 68.7 bits (167), Expect = 5e-13
 Identities = 33/206 (16%), Positives = 75/206 (36%), Gaps = 24/206 (11%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNS-NVMTPLAYVL 625
           +S  ++A+ + +     +K L    K        K  +E+++L  L    N++T    V 
Sbjct: 48  YSEVFEAINITNNEKVVVKILKPVKK-------KKIKREIKILENLRGGPNIITLADIVK 100

Query: 626 --ASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILL 683
              S +  L +E+        +        L           + + L + H   S  I+ 
Sbjct: 101 DPVSRTPALVFEHVNNTDFKQLYQT-----LTDYDIRFYMYEILKALDYCH---SMGIMH 152

Query: 684 LDLSTRNIFLKSL-KEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMR-VTM 741
            D+   N+ +    ++ ++ D  L +   P +     +    S  +  PE     +    
Sbjct: 153 RDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEY---NVRVASRYFKGPELLVDYQMYDY 209

Query: 742 AGNVYSFGVILLELLTGKTAVNQGNE 767
           + +++S G +L  ++  K     G++
Sbjct: 210 SLDMWSLGCMLASMIFRKEPFFHGHD 235

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.0 bits (162), Expect = 9e-13
 Identities = 46/211 (21%), Positives = 79/211 (37%), Gaps = 27/211 (12%)

Query: 165 SVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLR 224
           ++P  + +    L LS N L       L+ +  L  ++L    L         P L  L 
Sbjct: 24  ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83

Query: 225 LGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLP 284
           L                          +++    +P    +  +LT+L+++ N L     
Sbjct: 84  L--------------------------SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 285 IQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNL 344
             L  LG LQ + L+ N+L    P   +    L  ++++ N+L+      L+ L NL  L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 345 NLRQNNLNGSIPNSITNMRSLIELQLGGNQL 375
            L++N+L  +IP        L    L GN  
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (149), Expect = 4e-11
 Identities = 45/213 (21%), Positives = 74/213 (34%), Gaps = 9/213 (4%)

Query: 235 PSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQ 294
           P    + +     +  D  + T  +P  L   +  T+L+L++N L       L     L 
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 295 VMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGS 354
              L L++           L +L T+++S N L        +     V  ++  N L   
Sbjct: 59  Q--LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL-DVSFNRLTSL 115

Query: 355 IPNSITNMRSLIELQLGGNQLSGTIP--MMPPRLQIALNLSSNLFEGPIPTTFARLNGLE 412
              ++  +  L EL L GN+L    P  + P      L+L++N            L  L+
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175

Query: 413 VLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQL 445
            L L  N     IP+       L    L  N  
Sbjct: 176 TLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 5e-09
 Identities = 41/207 (19%), Positives = 68/207 (32%), Gaps = 6/207 (2%)

Query: 75  GKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILS 134
            K  +  E+          +P  +   ++ T++ LS N L       +   ++L  L L 
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 135 ANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLS 194
              L          +      + NQ +    +   +      LD+S+N+L  +    L  
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL-TVLDVSFNRLTSLPLGALRG 122

Query: 195 HPNLQTIDLSVNMLEGSLP-QNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNN 253
              LQ + L  N L+   P        +      N  + E+P+     LE L  L L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 254 SFTGMIPQQLGSCRSLTLLNLAQNELN 280
           S    IP+       L    L  N   
Sbjct: 183 SLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 1e-08
 Identities = 41/206 (19%), Positives = 63/206 (30%), Gaps = 7/206 (3%)

Query: 3   SCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLS 62
               +     +N  K  L +LP  +      +L  S N L             L  LNL 
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 63  KNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRI 122
           + +              +   +   +     +P        LT++D+S N L+      +
Sbjct: 64  RAELTKLQVDGTLP---VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 123 GELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRF--LRNLDLS 180
             L +L+ L L  N L    P  L     L + +   N  +    G +     L  L L 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 181 YNKLLGVIPIDLLSHPNLQTIDLSVN 206
            N L   IP        L    L  N
Sbjct: 181 ENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 4e-06
 Identities = 51/262 (19%), Positives = 84/262 (32%), Gaps = 37/262 (14%)

Query: 103 NLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKF 162
           +   ++    NL+ ++P  +       +L LS N L                        
Sbjct: 11  SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLL------------------------ 43

Query: 163 SGSVPGGITRF--LRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNL 220
                  +  +  L  L+L   +L  +     L  P L T+DLS N L+       +   
Sbjct: 44  YTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL--PVLGTLDLSHNQLQSLPLLGQTLPA 101

Query: 221 VRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELN 280
           + +   +   +  +P      L +L  L L  N    + P  L     L  L+LA N L 
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161

Query: 281 GSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGS-----IPSFL 335
                 L  L  L  + LQ N L   IP  F    LL    +  N    +        +L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL 220

Query: 336 SNLTNLVNLNLRQNNLNGSIPN 357
            +    V +  +  ++     N
Sbjct: 221 QDNAENVYVWKQGVDVKAMTSN 242

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.003
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 37  FSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFH 91
            ++NNL        + L +L +L L +N     +P     +  L    L GN + 
Sbjct: 155 LANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (163), Expect = 2e-12
 Identities = 38/211 (18%), Positives = 70/211 (33%), Gaps = 20/211 (9%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
                 A       +  IKKL+            +  +EL ++  +++ N+++ L     
Sbjct: 30  QGIVCAAYDAVLDRNVAIKKLS--RPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTP 87

Query: 627 SDSA------YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNP 680
             +       YL  E         +         D      +   +  G+  LH   S  
Sbjct: 88  QKTLEEFQDVYLVMELMDANLCQVIQMEL-----DHERMSYLLYQMLCGIKHLH---SAG 139

Query: 681 ILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVT 740
           I+  DL   NI +KS    +I D  L +    S      +    +  Y  PE    M   
Sbjct: 140 IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM---TPYVVTRYYRAPEVILGMGYK 196

Query: 741 MAGNVYSFGVILLELLTGKTAVNQGNELAKW 771
              +++S G I+ E++  K      + + +W
Sbjct: 197 ENVDIWSVGCIMGEMVRHKILFPGRDYIDQW 227

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (161), Expect = 3e-12
 Identities = 38/199 (19%), Positives = 74/199 (37%), Gaps = 18/199 (9%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           + +   A    +G+   +KKL+   +   +    +  +EL +L  + + NV+  L     
Sbjct: 31  YGSVCAAFDTKTGLRVAVKKLSRPFQ--SIIHAKRTYRELRLLKHMKHENVIGLLDVFTP 88

Query: 627 SDSA-----YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPI 681
           + S           +     L +++       L       +   + +GL ++H   S  I
Sbjct: 89  ARSLEEFNDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQILRGLKYIH---SADI 142

Query: 682 LLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTM 741
           +  DL   N+ +    E +I D  L +  D   +    +         P      M    
Sbjct: 143 IHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRW----YRAPEIMLNWMHYNQ 198

Query: 742 AGNVYSFGVILLELLTGKT 760
             +++S G I+ ELLTG+T
Sbjct: 199 TVDIWSVGCIMAELLTGRT 217

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.9 bits (147), Expect = 9e-12
 Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 7/125 (5%)

Query: 319 TMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGT 378
            ++++   L+  +   L  L  + +L+L  N L    P ++  +R L  LQ   N L   
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58

Query: 379 IPMMPPRLQIALNLSSN-LFEGPIPTTFARLNGLEVLDLSNNRFSGE---IPQLLAQMPT 434
             +        L L +N L +            L +L+L  N    E     +L   +P+
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 435 LTQLL 439
           ++ +L
Sbjct: 119 VSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 6e-06
 Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 4/106 (3%)

Query: 344 LNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPT 403
           L+L   +L  ++   +  +  +  L L  N+L    P +   L+    L ++        
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALA-ALRCLEVLQASDNALENVD 59

Query: 404 TFARLNGLEVLDLSNNRF-SGEIPQLLAQMPTLTQLLLTNNQLSGV 448
             A L  L+ L L NNR       Q L   P L  L L  N L   
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 175 RNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEI 234
           R L L++  L  +  ++ L    +  +DLS N L    P      L  L +         
Sbjct: 1   RVLHLAHKDLTVLCHLEQL--LLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALE 56

Query: 235 PSATFTSLEKLTYLELDNNSFTGM-IPQQLGSCRSLTLLNLAQNELNG 281
                 +L +L  L L NN        Q L SC  L LLNL  N L  
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 12/126 (9%)

Query: 34  VLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGE 93
           VL  +  +L    +L+  +L+ +  L+LS N+     P  L   + LE  VL  +    E
Sbjct: 2   VLHLAHKDLTVLCHLE--QLLLVTHLDLSHNRLRALPP-ALAALRCLE--VLQASDNALE 56

Query: 94  IPKGIADYRNLTLIDLSANNL-SGSVPDRIGELSKLEVLILSANNL------DGRLPTSL 146
              G+A+   L  + L  N L   +    +    +L +L L  N+L        RL   L
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 147 ASITTL 152
            S++++
Sbjct: 117 PSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 5/119 (4%)

Query: 11  KLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFL 70
           ++L+ +  +L  L        +  LD S N L          L  L+ L  S N      
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59

Query: 71  PINLGKTKALEELVLSGNAF-HGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKL 128
            +        +EL+L  N        + +     L L++L  N+L          L+++
Sbjct: 60  GVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 5e-05
 Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 1/84 (1%)

Query: 174 LRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGE 233
           + +LDLS+N+L  + P  L +   L+ +  S N LE        P L  L L  N L   
Sbjct: 22  VTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQS 80

Query: 234 IPSATFTSLEKLTYLELDNNSFTG 257
                  S  +L  L L  NS   
Sbjct: 81  AAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 59.0 bits (141), Expect = 2e-10
 Identities = 38/178 (21%), Positives = 68/178 (38%), Gaps = 8/178 (4%)

Query: 246 TYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQL-GSLGILQVMNLQLNKLS 304
           T ++         IP+ +      T L L  NEL       L G L  L  + L+ N+L+
Sbjct: 11  TTVDCTGRGLKE-IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67

Query: 305 GEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRS 364
           G  P+ F     +  + +  N +          L  L  LNL  N ++  +P S  ++ S
Sbjct: 68  GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127

Query: 365 LIELQLGGNQLSGTIPMMP-PRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRF 421
           L  L L  N  +    +          +L+        P+   ++  +++ DL ++ F
Sbjct: 128 LTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 55.2 bits (131), Expect = 3e-09
 Identities = 37/177 (20%), Positives = 67/177 (37%), Gaps = 5/177 (2%)

Query: 199 QTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGM 258
            T+D +   L+  +P+++  +   L L  N L        F  L  L  LEL  N  TG+
Sbjct: 11  TTVDCTGRGLK-EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 259 IPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLS 318
            P        +  L L +N++          L  L+ +NL  N++S  +P  F  L  L+
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 319 TMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQL 375
           ++N+  ++              L   +L         P   + +R +    L  ++ 
Sbjct: 130 SLNL-ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 54.8 bits (130), Expect = 4e-09
 Identities = 34/171 (19%), Positives = 65/171 (38%), Gaps = 6/171 (3%)

Query: 165 SVPGGITRFLRNLDLSYNKLLGVIPIDLLS-HPNLQTIDLSVN-MLEGSLPQNMSPNLVR 222
            +P  I      L L+ N+L  +    L    P+L  ++L  N +           + ++
Sbjct: 22  EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81

Query: 223 LRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGS 282
                   I EI +  F  L +L  L L +N  + ++P       SLT LNLA N  N +
Sbjct: 82  ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141

Query: 283 LPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPS 333
             +   +  + +  +L         PS+   +++    ++  +    S  +
Sbjct: 142 CHLAWFAEWLRK-KSLNGGAARCGAPSKVRDVQIK---DLPHSEFKCSSEN 188

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.8 bits (146), Expect = 3e-10
 Identities = 33/208 (15%), Positives = 77/208 (37%), Gaps = 23/208 (11%)

Query: 568 FSTYYKAV-MPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA 626
           FST + A  M +     +K +   DK++        + E+++L ++++++     +    
Sbjct: 26  FSTVWLAKDMVNNTHVAMKIVR-GDKVY----TEAAEDEIKLLQRVNDADNTKEDSMGAN 80

Query: 627 SDSAYL--FYEYAPKGTLFDVLHGCLENALDWASRY------------SIAVGVAQGLAF 672
                L  F    P G    ++   L   L    +              I+  +  GL +
Sbjct: 81  HILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDY 140

Query: 673 LHGFTSNPILLLDLSTRNIFLKSLKEPQ-IGDIELCKVIDPSKSTGSLSTVAGSVGYIPP 731
           +H      I+  D+   N+ ++ +  P+ +  I++  + +        +    +  Y  P
Sbjct: 141 MH--RRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSP 198

Query: 732 EYAYTMRVTMAGNVYSFGVILLELLTGK 759
           E           +++S   ++ EL+TG 
Sbjct: 199 EVLLGAPWGCGADIWSTACLIFELITGD 226

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 44/288 (15%), Positives = 88/288 (30%), Gaps = 39/288 (13%)

Query: 105 TLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSG 164
             +DL+  NL   V  R+     +       + +D  L    +                 
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFR-------------- 47

Query: 165 SVPGGITRFLRNLDLSYNKLLGVIPIDLLSH-PNLQTIDLSVNMLEGSLPQNMS--PNLV 221
                    ++++DLS + +       +LS    LQ + L    L   +   ++   NLV
Sbjct: 48  ---------VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV 98

Query: 222 RL-RLGTNLLIGEIPSATFTSLEKLTYL------ELDNNSFTGMIPQQLGSCRSLTLLNL 274
           RL   G +           +S  +L  L      +         +     +   L L   
Sbjct: 99  RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 158

Query: 275 AQNELNGSLPIQLGSLGILQVMNLQLN-KLSGEIPSQFSQLKLLSTMNISW-NSLSGSIP 332
            +N     L   +     L  ++L  +  L  +   +F QL  L  +++S    +     
Sbjct: 159 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL 218

Query: 333 SFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIP 380
             L  +  L  L +     +G++      +     LQ+  +  +    
Sbjct: 219 LELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHFTTIAR 263

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 41/286 (14%), Positives = 91/286 (31%), Gaps = 19/286 (6%)

Query: 35  LDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGE- 93
           LD +  NL+ ++  +      + +    ++  +  L  +    + ++ + LS +      
Sbjct: 5   LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62

Query: 94  IPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLS 153
           +   ++    L  + L    LS  + + + + S L  L LS  +            +   
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 154 RFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLP 213
               N +         +   + ++  +                NL     ++   + S  
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETIT------------QLNLSGYRKNLQKSDLSTL 170

Query: 214 QNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDN-NSFTGMIPQQLGSCRSLTLL 272
               PNLV L L  ++++       F  L  L +L L            +LG   +L  L
Sbjct: 171 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 230

Query: 273 NLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLS 318
            +     +G+L +   +L  LQ+     +  +          K   
Sbjct: 231 QVFGIVPDGTLQLLKEALPHLQINC---SHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 4e-06
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 368 LQLGGNQLSGTIPM-MPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGE-I 425
           L L G  L   +   +  +  IA     +  + P+   F+    ++ +DLSN+      +
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTL 63

Query: 426 PQLLAQMPTLTQLLLTNNQLSGVVPK 451
             +L+Q   L  L L   +LS  +  
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVN 89

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 5e-05
 Identities = 37/280 (13%), Positives = 90/280 (32%), Gaps = 40/280 (14%)

Query: 9   GLKLLNFSKNELV-SLPTFNGFAGLEVLDFSSNNLNGN-INLQFDELVSLKSLNLSKNKF 66
           G+      ++ +   L        ++ +D S++ +  + ++    +   L++L+L   + 
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 83

Query: 67  NGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELS 126
           +  +   L K   L  L LSG +   E            L +L+ +         +    
Sbjct: 84  SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 143

Query: 127 KLEVLILSANNLDGRLPTSLASITTLSRFAANQNKF-----------SGSVPGGITRFLR 175
                 ++  NL G       S  +                                +L+
Sbjct: 144 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 203

Query: 176 NLDLSY-NKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEI 234
           +L LS    ++    ++L   P L+T+ +   + +G+L                      
Sbjct: 204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ--------------------- 242

Query: 235 PSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNL 274
                   E L +L+++ + FT +    +G+ ++  +  +
Sbjct: 243 -----LLKEALPHLQINCSHFTTIARPTIGNKKNQEIWGI 277

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.1 bits (126), Expect = 3e-08
 Identities = 38/215 (17%), Positives = 74/215 (34%), Gaps = 23/215 (10%)

Query: 219 NLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNE 278
           N +++  G + +   +   T   L+ +T L       T +  + +    +L  L L  N+
Sbjct: 20  NAIKIAAGKSNVTDTV---TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQ 74

Query: 279 LNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNL 338
           +    P++  +      ++    K    I    S   L  T     +    +  S L  L
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134

Query: 339 TNLVNLNLRQNNL--------------NGSIPNSITNMRSLIELQLGGNQLSGTIPMMP- 383
              +N     + L                S    + N+  L  L+   N++S   P+   
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASL 194

Query: 384 PRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSN 418
           P L   ++L +N      P   A  + L ++ L+N
Sbjct: 195 PNLIE-VHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 35/209 (16%), Positives = 63/209 (30%), Gaps = 18/209 (8%)

Query: 10  LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGF 69
              +   K+ +    T     G+  L      +     +Q+  L +L  L L  N+    
Sbjct: 21  AIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQY--LNNLIGLELKDNQITDL 78

Query: 70  LPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLE 129
            P+         EL  +       I    +            +    +    +  L    
Sbjct: 79  APLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL 138

Query: 130 VLILSANNLDGRL--------------PTSLASITTLSRFAANQNKFSGSVPGGITRFLR 175
             I + + L G                 T LA+++ L+   A+ NK S   P      L 
Sbjct: 139 NQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLI 198

Query: 176 NLDLSYNKLLGVIPIDLLSHPNLQTIDLS 204
            + L  N++  V P+      NL  + L+
Sbjct: 199 EVHLKNNQISDVSPLANT--SNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 37/246 (15%), Positives = 74/246 (30%), Gaps = 39/246 (15%)

Query: 102 RNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNK 161
            N   I    +N++ +V     +L  +  L      +     T++  +  L+        
Sbjct: 19  ANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV-----TTIEGVQYLNN------- 64

Query: 162 FSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLV 221
                       L  L+L  N++  + P+  L+      +  +      ++    S   +
Sbjct: 65  ------------LIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTL 112

Query: 222 RLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNG 281
            L       +  +   +                    I           L  L+      
Sbjct: 113 DLTSTQITDVTPLAGLSNLQ---------VLYLDLNQITNISPLAGLTNLQYLSIGNAQV 163

Query: 282 SLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNL 341
           S    L +L  L  +    NK+S   P   + L  L  +++  N +S   P  L+N +NL
Sbjct: 164 SDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNL 219

Query: 342 VNLNLR 347
             + L 
Sbjct: 220 FIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 41/228 (17%), Positives = 87/228 (38%), Gaps = 16/228 (7%)

Query: 147 ASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVN 206
            ++    + AA ++  + +V       +  L      +  +  +  L   NL  ++L  N
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYL--NNLIGLELKDN 73

Query: 207 MLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSC 266
            +          NL ++             +    L+ +  L+L +   T +    L   
Sbjct: 74  QIT---DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV--TPLAGL 128

Query: 267 RSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNS 326
            +L +L L  N++    P+     G+  +  L +        +  + L  L+T+    N 
Sbjct: 129 SNLQVLYLDLNQITNISPLA----GLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK 184

Query: 327 LSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQ 374
           +S   P  L++L NL+ ++L+ N ++   P  + N  +L  + L  NQ
Sbjct: 185 ISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL-TNQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 7e-05
 Identities = 38/211 (18%), Positives = 68/211 (32%), Gaps = 16/211 (7%)

Query: 241 SLEKLTYLELDNNSFTGMIPQ-QLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQ 299
           +L     +    ++ T  + Q  L    +L+        + G     +  L  L  + L+
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLELK 71

Query: 300 LNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSI 359
            N+++   P +         ++ +      +I    S  T  +      +          
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV--------T 123

Query: 360 TNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNN 419
                     L  +    T       L     LS    +    T  A L+ L  L   +N
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 420 RFSGEIPQLLAQMPTLTQLLLTNNQLSGVVP 450
           + S   P  LA +P L ++ L NNQ+S V P
Sbjct: 184 KISDISP--LASLPNLIEVHLKNNQISDVSP 212

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 34/218 (15%), Positives = 63/218 (28%), Gaps = 30/218 (13%)

Query: 78  KALEELV---LSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILS 134
            AL   +      +     + +  AD   +T +      ++    + +  L+ L  L L 
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELK 71

Query: 135 ANNLDGRLPTSLASITTLSRFAANQNKFS------------------GSVPGGITRFLRN 176
            N +    P    +  T    + N  K                     +    +      
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 177 LDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPS 236
             L  +         L    NLQ + +    +    P      L  L+   N +    P 
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190

Query: 237 ATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNL 274
               SL  L  + L NN  + + P  L +  +L ++ L
Sbjct: 191 --LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 2/62 (3%)

Query: 1   MQSCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLN 60
           +     +  L  L    N++  +        L  +   +N ++    L      +L  + 
Sbjct: 166 LTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVT 223

Query: 61  LS 62
           L+
Sbjct: 224 LT 225

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (127), Expect = 4e-08
 Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 5/95 (5%)

Query: 293 LQVMNLQLNKLSGE-IPSQFSQLKLLSTMNISWNSLSG----SIPSFLSNLTNLVNLNLR 347
           +Q +++Q  +LS          L+    + +    L+      I S L     L  LNLR
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 348 QNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMM 382
            N L     + +         ++    L       
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (125), Expect = 9e-08
 Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 27/119 (22%)

Query: 332 PSFLSNLTNLVNLNLRQNNLNG----SIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQ 387
                  + L  L L   +++     S+  ++    SL EL L  N L     +     Q
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL-----Q 416

Query: 388 IALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLS 446
           +  ++                  LE L L +  +S E+         L  L      L 
Sbjct: 417 LVESVRQPG------------CLLEQLVLYDIYWSEEMEDR------LQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (123), Expect = 2e-07
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 217 SPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGM----IPQQLGSCRSLTLL 272
           S ++  L +    L     +     L++   + LD+   T      I   L    +L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 273 NLAQNELNGSLPIQLGSLGILQVMNLQLNKLS 304
           NL  NEL       +     LQ  + ++ KLS
Sbjct: 61  NLRSNELGDVGVHCVLQG--LQTPSCKIQKLS 90

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 2e-06
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 268 SLTLLNLAQNELNGSLPIQL-GSLGILQVMNLQLNKLSGE----IPSQFSQLKLLSTMNI 322
            +  L++   EL+ +   +L   L   QV+ L    L+      I S       L+ +N+
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 323 SWNSLSGSIPSFLSNLTNLVNLNLRQNNLNG 353
             N L       +       +  +++ +L  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 2e-06
 Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 24/108 (22%)

Query: 103 NLTLIDLSANNLSGS-VPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNK 161
           ++  +D+    LS +   + +  L + +V+ L    L       ++S         N   
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-----LRVNPA- 56

Query: 162 FSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLS-----HPNLQTIDLS 204
                       L  L+L  N+L  V    +L         +Q + L 
Sbjct: 57  ------------LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 3e-06
 Identities = 11/109 (10%), Positives = 30/109 (27%), Gaps = 19/109 (17%)

Query: 340 NLVNLNLRQNNLNGS-IPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFE 398
           ++ +L+++   L+ +     +  ++    ++L    L+                      
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC------------------ 44

Query: 399 GPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSG 447
             I +       L  L+L +N         + Q        +    L  
Sbjct: 45  KDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 3e-06
 Identities = 12/94 (12%), Positives = 30/94 (31%), Gaps = 10/94 (10%)

Query: 54  VSLKSLNLSKNKFNGFLPINLGKT-KALEELVLSGNAFHGE----IPKGIADYRNLTLID 108
           + ++SL++   + +      L    +  + + L            I   +     L  ++
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 109 LSANNLSGSVPDRIGEL-----SKLEVLILSANN 137
           L +N L       + +       K++ L L    
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 3e-06
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 11/91 (12%)

Query: 55  SLKSLNLSKNKFNG----FLPINLGKTKALEELVLSGNAFHGEIPKGIAD-----YRNLT 105
            L+ L L+    +      L   L    +L EL LS N         + +        L 
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 106 LIDLSANNLSGSVPDRIGELSKL--EVLILS 134
            + L     S  + DR+  L K    + ++S
Sbjct: 430 QLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 3e-06
 Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 9/80 (11%)

Query: 293 LQVMNLQLNKLSGE----IPSQFSQLKLLSTMNISWNSLSGSIPSFLS-----NLTNLVN 343
           L+V+ L    +S      + +       L  +++S N L  +    L          L  
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 344 LNLRQNNLNGSIPNSITNMR 363
           L L     +  + + +  + 
Sbjct: 431 LVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 5e-06
 Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 9/84 (10%)

Query: 308 PSQFSQLKLLSTMNISWNSLSG----SIPSFLSNLTNLVNLNLRQNNLNGSIPNSI---- 359
                   +L  + ++   +S     S+ + L    +L  L+L  N L  +    +    
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 360 -TNMRSLIELQLGGNQLSGTIPMM 382
                 L +L L     S  +   
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 5e-06
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 9/92 (9%)

Query: 233 EIPSATFTSLEKLTYLELDNNSFTGM----IPQQLGSCRSLTLLNLAQNELNGSLPIQLG 288
           E+          L  L L +   +      +   L +  SL  L+L+ N L  +  +QL 
Sbjct: 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418

Query: 289 S-----LGILQVMNLQLNKLSGEIPSQFSQLK 315
                   +L+ + L     S E+  +   L+
Sbjct: 419 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 8e-06
 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 9/79 (11%)

Query: 80  LEELVLSGNAFHGE----IPKGIADYRNLTLIDLSANNLSGSVPDRIGE-----LSKLEV 130
           L  L L+           +   +    +L  +DLS N L  +   ++ E        LE 
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 131 LILSANNLDGRLPTSLASI 149
           L+L        +   L ++
Sbjct: 431 LVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 1e-05
 Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 9/72 (12%)

Query: 390 LNLSSNLFEG----PIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQ-----MPTLTQLLL 440
           L L+           +  T    + L  LDLSNN         L +        L QL+L
Sbjct: 374 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 433

Query: 441 TNNQLSGVVPKF 452
            +   S  +   
Sbjct: 434 YDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 3e-05
 Identities = 18/107 (16%), Positives = 31/107 (28%), Gaps = 25/107 (23%)

Query: 174 LRNLDLSYNKLLGVIPIDLLSH-PNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIG 232
           +++LD+   +L      +LL      Q + L    L                  T     
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL------------------TEARCK 45

Query: 233 EIPSATFTSLEKLTYLELDNNSFTGMIPQQLGS-----CRSLTLLNL 274
           +I SA       L  L L +N    +    +          +  L+L
Sbjct: 46  DISSA-LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 6e-05
 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 9/84 (10%)

Query: 26  FNGFAGLEVLDFSSNNLNGNINLQFDELV----SLKSLNLSKNKFNGFLPINLGK----- 76
               + L VL  +  +++ +        +    SL+ L+LS N       + L +     
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 77  TKALEELVLSGNAFHGEIPKGIAD 100
              LE+LVL    +  E+   +  
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQA 448

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.002
 Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 22/96 (22%)

Query: 174 LRNLDLSYNKL----LGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNL 229
           LR L L+   +       +   LL++ +L+ +DLS N L  +                  
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL--------------- 415

Query: 230 LIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGS 265
              ++  +       L  L L +  ++  +  +L +
Sbjct: 416 ---QLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA 448

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.003
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 23/94 (24%)

Query: 126 SKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLL 185
           S L VL L+  ++     +SLA+        AN +             LR LDLS N L 
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAAT-----LLANHS-------------LRELDLSNNCLG 410

Query: 186 GVIPIDLLS-----HPNLQTIDLSVNMLEGSLPQ 214
               + L+         L+ + L        +  
Sbjct: 411 DAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.004
 Identities = 19/109 (17%), Positives = 29/109 (26%), Gaps = 25/109 (22%)

Query: 101 YRNLTLIDLSANNLSGSVPDRIGE----LSKLEVLILSANNLDGRLPTSLASITTLSRFA 156
              L ++ L+  ++S S    +         L  L LS N L       L         +
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE-------S 420

Query: 157 ANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDL----LSHPNLQTI 201
             Q              L  L L        +   L       P+L+ I
Sbjct: 421 VRQPGCL----------LEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 53.7 bits (127), Expect = 5e-08
 Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 10/99 (10%)

Query: 296 MNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSI 355
               LN  S EI S       L  +N+S N L   +P+    L     L    N+L   +
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EV 319

Query: 356 PNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSS 394
           P    N   L +L +  N L    P +P  ++  L ++S
Sbjct: 320 PELPQN---LKQLHVEYNPLR-EFPDIPESVE-DLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.5 bits (124), Expect = 9e-08
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 345 NLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTT 404
               N  +  I +      SL EL +  N+L   +P +PPRL+  L  S N     +P  
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER-LIASFNHLAE-VPEL 322

Query: 405 FARLNGLEVLDLSNNRFSGEIPQLLAQMPTL 435
                 L+ L +  N    E P +   +  L
Sbjct: 323 ---PQNLKQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.5 bits (124), Expect = 1e-07
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 37  FSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPK 96
           +  N  +  I    D   SL+ LN+S NK    LP    +   LE L+ S N    E+P+
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNHL-AEVPE 321

Query: 97  GIADYRNLTLIDLSANNLSGSVPDRIGELSKLEV 130
                +NL  + +  N L    PD    +  L +
Sbjct: 322 LP---QNLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.0 bits (120), Expect = 3e-07
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 320 MNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTI 379
                N+ S  I S      +L  LN+  N L   +P     +  LI      N L+  +
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHLA-EV 319

Query: 380 PMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSN 418
           P +P  L+  L++  N      P        +E L +++
Sbjct: 320 PELPQNLKQ-LHVEYNPLRE-FPDI---PESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.0 bits (120), Expect = 3e-07
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 9/92 (9%)

Query: 250 LDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPS 309
              N+ +  I        SL  LN++ N+L   LP        L+ +    N L+ E+P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPE 321

Query: 310 QFSQLKLLSTMNISWNSLSGSIPSFLSNLTNL 341
               LK L   ++ +N L    P    ++ +L
Sbjct: 322 LPQNLKQL---HVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 8/95 (8%)

Query: 179 LSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSAT 238
              N     I       P+L+ +++S N L   LP    P L RL    N L  E+P   
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP-PRLERLIASFNHL-AEVPE-- 321

Query: 239 FTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLN 273
               + L  L ++ N      P    S   L + +
Sbjct: 322 --LPQNLKQLHVEYNPLRE-FPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 49/305 (16%), Positives = 94/305 (30%), Gaps = 25/305 (8%)

Query: 174 LRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGE 233
              L+L+   L   +P +L   P+L+++  S N L   LP+    +L  L +  N L   
Sbjct: 40  AHELELNNLGL-SSLP-ELP--PHLESLVASCNSLT-ELPELPQ-SLKSLLVDNNNLKAL 93

Query: 234 IPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGIL 293
                      ++  +L+                    L    +       I  G+  + 
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 294 QVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNG 353
           ++  LQ       I +  + LK L  + +S  S+                  L     + 
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 354 SIPNSITNMRSLIELQLGGNQLSGTIP---------------MMPPRLQIALNLSSNLFE 398
           ++  ++ ++   +E     +     +P                             N   
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 399 GPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGVVPKFSKWVSV 458
             I +       LE L++SNN+   E+P L    P L +L+ + N L+ V         +
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLAEVPELPQNLKQL 329

Query: 459 DTTGN 463
               N
Sbjct: 330 HVEYN 334

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 9/69 (13%)

Query: 380 PMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLL 439
             +PP L+  LN+S+N     +P    RL   E L  S N  + E+P+L      L QL 
Sbjct: 280 CDLPPSLEE-LNVSNNKLIE-LPALPPRL---ERLIASFNHLA-EVPELP---QNLKQLH 330

Query: 440 LTNNQLSGV 448
           +  N L   
Sbjct: 331 VEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 5e-05
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 8/78 (10%)

Query: 1   MQSCGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLN 60
              C     L+ LN S N+L+ LP       LE L  S N+L   +    +   +LK L+
Sbjct: 277 RSLCDLPPSLEELNVSNNKLIELP--ALPPRLERLIASFNHLA-EVP---ELPQNLKQLH 330

Query: 61  LSKNKFNGF--LPINLGK 76
           +  N    F  +P ++  
Sbjct: 331 VEYNPLREFPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 25/115 (21%), Positives = 38/115 (33%), Gaps = 31/115 (26%)

Query: 85  LSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPT 144
              NA   EI        +L  +++S N L   +P       +LE LI S N+L   +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHL-AEVPE 321

Query: 145 SLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQ 199
              +                         L+ L + YN L    P    S  +L+
Sbjct: 322 LPQN-------------------------LKQLHVEYNPLRE-FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 4/38 (10%)

Query: 409 NGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLS 446
                L+L+N   S  +P+L    P L  L+ + N L+
Sbjct: 38  RQAHELELNNLGLS-SLPELP---PHLESLVASCNSLT 71

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 31/221 (14%), Positives = 67/221 (30%), Gaps = 8/221 (3%)

Query: 165 SVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLR 224
            +P  + R    L     KL  +         +L+ I++S N +   +  ++  NL +L 
Sbjct: 22  EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH 81

Query: 225 LGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLP 284
                    +      + + L  L+    S TG+               L   + N ++ 
Sbjct: 82  EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH 141

Query: 285 IQLGSLGILQVM-----NLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLT 339
               +  +          L  N +       F+  +L        N+L           +
Sbjct: 142 TIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGAS 201

Query: 340 NLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIP 380
             V L++ +  ++      + N++ L         L   +P
Sbjct: 202 GPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 2e-06
 Identities = 30/248 (12%), Positives = 67/248 (27%), Gaps = 20/248 (8%)

Query: 197 NLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFT 256
           + +      + +   +P ++  N + LR      +  I    F+    L  +E+  N   
Sbjct: 9   SNRVFLCQESKVT-EIPSDLPRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVL 66

Query: 257 GMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKL 316
            +I   + S          +   N           +  +  L ++               
Sbjct: 67  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS--------------- 111

Query: 317 LSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLS 376
                   +         L  +   +  N+  + +  +    ++    ++ L   G Q  
Sbjct: 112 ---NTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 168

Query: 377 GTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLT 436
                   +L       +N  E      F   +G  +LD+S  R        L  +  L 
Sbjct: 169 HNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR 228

Query: 437 QLLLTNNQ 444
                N +
Sbjct: 229 ARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 25  TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNK 65
            F+G +G  +LD S   ++   +   + L  L++ +    K
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 186 GVIPIDLLSH-PNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPS 236
             +P D+         +D+S   +  SLP     NL +LR  +   + ++P+
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLPT 240

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.5 bits (109), Expect = 4e-06
 Identities = 40/203 (19%), Positives = 72/203 (35%), Gaps = 14/203 (6%)

Query: 240 TSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQ 299
            +  +     L   S T  + Q      S+  +    +++     IQ   L  +  + L 
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLN 76

Query: 300 LNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSI 359
            NKL+       + LK L  + +  N +              ++      +   S  N +
Sbjct: 77  GNKLTDIK--PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLS----LEHNGISDINGL 130

Query: 360 TNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNN 419
            ++  L  L LG N+++    +        L+L  N     +P   A L  L+ L LS N
Sbjct: 131 VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188

Query: 420 RFSGEIPQLLAQMPTLTQLLLTN 442
             S ++   LA +  L  L L +
Sbjct: 189 HIS-DLRA-LAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 28/195 (14%), Positives = 65/195 (33%), Gaps = 15/195 (7%)

Query: 176 NLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIP 235
             +L    +   +  + L+  ++  I  + + ++        PN+ +L L  N L     
Sbjct: 28  KDNLKKKSVTDAVTQNELN--SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--- 82

Query: 236 SATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQV 295
                 L  L  L         +                 ++     +   +    +  +
Sbjct: 83  ---IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 139

Query: 296 MNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSI 355
                      + S+ ++L  LS  +   + +       L+ LT L NL L +N++  S 
Sbjct: 140 YLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSKNHI--SD 192

Query: 356 PNSITNMRSLIELQL 370
             ++  +++L  L+L
Sbjct: 193 LRALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 31/192 (16%), Positives = 65/192 (33%), Gaps = 12/192 (6%)

Query: 13  LNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPI 72
            N  K  +    T N    ++ +  +++++     +Q+  L ++  L L+ NK     P+
Sbjct: 29  DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQY--LPNVTKLFLNGNKLTDIKPL 86

Query: 73  NLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLI 132
                  L+ L       +                    +N    +   +       + +
Sbjct: 87  -----ANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYL 141

Query: 133 LSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDL 192
            +    D  + + L  + T    +   N+ S  VP      L+NL LS N +  +  +  
Sbjct: 142 GNNKITDITVLSRLTKLDT---LSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAG 198

Query: 193 LSHPNLQTIDLS 204
           L   NL  ++L 
Sbjct: 199 L--KNLDVLELF 208

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 47.2 bits (110), Expect = 5e-06
 Identities = 54/353 (15%), Positives = 104/353 (29%), Gaps = 47/353 (13%)

Query: 49  QFD-ELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGE----IPKGIADYRN 103
           +F  E  SLK   ++           L +  +++E+VLSGN    E    + + IA  ++
Sbjct: 2   RFSIEGKSLKLDAITTEDEKSVFA-VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 60

Query: 104 LTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFS 163
           L + + S                    +          L  +L     L     + N F 
Sbjct: 61  LEIAEFSDIF--------------TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 106

Query: 164 GSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRL 223
            +    +  FL       +  L    +          I  ++  L  +     +P L  +
Sbjct: 107 PTAQEPLIDFLSKHTPLEHLYLHNNGLG---PQAGAKIARALQELAVNKKAKNAPPLRSI 163

Query: 224 RLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQ------- 276
             G N L          + +    L        G+ P+ +       L    +       
Sbjct: 164 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQ 223

Query: 277 -----NELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQ------LKLLSTMNISWN 325
                +  + +L I L S   L+ + L    LS    +             L T+ + +N
Sbjct: 224 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 283

Query: 326 SLSGSIPSFL-----SNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGN 373
            +       L       + +L+ L L  N       + +  +R +   +  G 
Sbjct: 284 EIELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.6 bits (98), Expect = 2e-04
 Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 9/98 (9%)

Query: 309 SQFS-QLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNG----SIPNSITNMR 363
           ++FS + K L    I+      S+ + L    ++  + L  N +       +  +I + +
Sbjct: 1   ARFSIEGKSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 59

Query: 364 SLIELQLGGNQ---LSGTIPMMPPRLQIALNLSSNLFE 398
            L   +        +   IP     L  AL     L  
Sbjct: 60  DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 97

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 3e-04
 Identities = 44/350 (12%), Positives = 87/350 (24%), Gaps = 47/350 (13%)

Query: 102 RNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNK 161
           ++L L  ++  +   SV   + E   ++ ++LS N +       L+        A+ ++ 
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN-----IASKKD- 60

Query: 162 FSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLV 221
                       L   + S      V      +   L              P+  +  L 
Sbjct: 61  ------------LEIAEFSDIFTGRVKDEIPEALRLLLQAL-------LKCPKLHTVRLS 101

Query: 222 RLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNG 281
               G       I   +  +  +  YL  +                              
Sbjct: 102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 161

Query: 282 SLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNL 341
           S+      L    +        S  +      ++         + L   +          
Sbjct: 162 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLD 221

Query: 342 VNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPI 401
           +  N   +  + ++  ++ +  +L EL L    LS             L           
Sbjct: 222 LQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG------- 274

Query: 402 PTTFARLNGLEVLDLSNNRFSGEIPQLLAQ-----MPTLTQLLLTNNQLS 446
                    L+ L L  N    +  + L       MP L  L L  N+ S
Sbjct: 275 ---------LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 9e-04
 Identities = 10/99 (10%), Positives = 34/99 (34%), Gaps = 8/99 (8%)

Query: 293 LQVMNLQLNKLSGE----IPSQFSQLKLLSTMNISWNSLSG----SIPSFLSNLTNLVNL 344
           ++  +L+L+ ++ E    + +   +   +  + +S N++       +   +++  +L   
Sbjct: 5   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 345 NLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMP 383
                            +R L++  L   +L        
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 103

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 5e-06
 Identities = 44/200 (22%), Positives = 72/200 (36%), Gaps = 16/200 (8%)

Query: 240 TSLEKLTYLELDNNSFTGMIPQ-QLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNL 298
           T+L +     L   + T  + Q  L    +L    L    ++G     +  L  L  +N 
Sbjct: 15  TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINF 69

Query: 299 QLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNS 358
             N+L+   P +        T  +     +  I              L   N   +  + 
Sbjct: 70  SNNQLTDITPLKNL------TKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 123

Query: 359 ITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSN 418
           + N+ +L  L+L  N +S    +        LN SSN      P   A L  LE LD+S+
Sbjct: 124 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISS 181

Query: 419 NRFSGEIPQLLAQMPTLTQL 438
           N+ S     +LA++  L  L
Sbjct: 182 NKVSD--ISVLAKLTNLESL 199

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 7e-06
 Identities = 35/155 (22%), Positives = 54/155 (34%), Gaps = 20/155 (12%)

Query: 300 LNKLSGE----IPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSI 355
           LN+L  E    +    S+    S   +    L       L      V LN  ++++  ++
Sbjct: 1   LNELKPEQVEQLKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNR-RSSMAATL 57

Query: 356 PNSITNMRSLIELQLGGNQLSGTIPMMP-----PRLQIALNLSSNLFEGPIPTTFARLNG 410
                N+  L+ L L  N+L     M       P L+I LNLS N  +        +   
Sbjct: 58  RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKI-LNLSGNELKSERELDKIKGLK 116

Query: 411 LEVLDLSNNRFSGEIP-------QLLAQMPTLTQL 438
           LE L L  N  S            +  + P L +L
Sbjct: 117 LEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRL 151

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 29/140 (20%), Positives = 46/140 (32%), Gaps = 5/140 (3%)

Query: 259 IPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLS 318
           +   +      +   L    L       L +  I  V+N + + ++  +      +  L 
Sbjct: 12  LKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNRR-SSMAATLRIIEENIPELL 68

Query: 319 TMNISWNSLSG--SIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLS 376
           ++N+S N L     + S +    NL  LNL  N L             L EL L GN LS
Sbjct: 69  SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128

Query: 377 GTIPMMPPRLQIALNLSSNL 396
            T       +         L
Sbjct: 129 DTFRDQSTYISAIRERFPKL 148

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.003
 Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 5/134 (3%)

Query: 10  LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGF 69
            + L+       S P         VL+   +++   + +  + +  L SLNLS N+    
Sbjct: 24  QQALDLKGLR--SDPDLVAQNIDVVLN-RRSSMAATLRIIEENIPELLSLNLSNNRLYRL 80

Query: 70  --LPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSK 127
             +   + K   L+ L LSGN    E          L  + L  N+LS +  D+   +S 
Sbjct: 81  DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA 140

Query: 128 LEVLILSANNLDGR 141
           +         LDG 
Sbjct: 141 IRERFPKLLRLDGH 154

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 12/152 (7%)

Query: 221 VRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELN 280
           V+L   T  LI +     +T+  +   L+L       +I     +      ++ + NE+ 
Sbjct: 1   VKL---TAELIEQAAQ--YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR 54

Query: 281 GSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSG----SIPSFLS 336
                    L  L+ + +  N++          L  L+ + ++ NSL         + L 
Sbjct: 55  KLDGF--PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK 112

Query: 337 NLTNLVNLNLRQNNLNGSIPNSITNMRSLIEL 368
           +LT L  L     N        I  +  +  L
Sbjct: 113 SLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 6e-04
 Identities = 21/146 (14%), Positives = 49/146 (33%), Gaps = 12/146 (8%)

Query: 302 KLSGEI---PSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNS 358
           KL+ E+    +Q++       +++    +   I +  + L     ++   N +       
Sbjct: 2   KLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP 60

Query: 359 ITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNL---SSNLFEGPIPTTFARLNGLEVLD 415
              +R L  L +  N++      +   L     L   +++L E       A L  L  L 
Sbjct: 61  --LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 118

Query: 416 LSN---NRFSGEIPQLLAQMPTLTQL 438
           +              ++ ++P +  L
Sbjct: 119 ILRNPVTNKKHYRLYVIYKVPQVRVL 144

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	833
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.83
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.82
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.76
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.65
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.62
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.62
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.56
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.47
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.44
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.4
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.4
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.38
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.37
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.33
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.33
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.54
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.48
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.13
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.87
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.66
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	97.61
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.58
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.84
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.75
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	96.04
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	93.59
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	93.25

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-54  Score=451.01  Aligned_cols=260  Identities=22%  Similarity=0.304  Sum_probs=202.3

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      ++|+..+.||+|+||+||+|+..  ..||||+++...  ......+.|.+|+++|++++|||||+++|++. ++..++||
T Consensus         8 ~~~~~~~~lG~G~fg~Vy~~~~~--~~vAvK~~~~~~--~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~-~~~~~lv~   82 (276)
T d1uwha_           8 GQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTA--PTPQQLQAFKNEVGVLRKTRHVNILLFMGYST-APQLAIVT   82 (276)
T ss_dssp             TCCCCCSEEEECSSCEEEEEESS--SEEEEEECCCSS--CCTTHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEE
T ss_pred             ccEEEEEEEeeCCCcEEEEEEEC--CEEEEEEEEccc--CCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEe-ccEEEEEE
Confidence            35777899999999999999864  359999995321  12234578999999999999999999999875 45689999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      |||++|+|.++++.. ...++|.++..|+.|+|+||+|||   +.+||||||||+|||++.++.+||+|||+|+......
T Consensus        83 Ey~~~g~L~~~l~~~-~~~~~~~~~~~i~~qi~~gl~yLH---~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~  158 (276)
T d1uwha_          83 QWCEGSSLYHHLHII-ETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWS  158 (276)
T ss_dssp             ECCCEEEHHHHHHTS-CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTSSEEECCCCCSCC-----
T ss_pred             ecCCCCCHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHh---cCCEeccccCHHHEEEcCCCCEEEccccceeeccccC
Confidence            999999999999753 346999999999999999999999   7899999999999999999999999999998765443


Q ss_pred             CCCccccccccccccccccccC---CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296          715 STGSLSTVAGSVGYIPPEYAYT---MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      ......+..||+.|||||++.+   ..|+.++|||||||++|||+||+.||.+.............. ..     .+...
T Consensus       159 ~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~~~~~~~~~~-~~-----~p~~~  232 (276)
T d1uwha_         159 GSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRG-YL-----SPDLS  232 (276)
T ss_dssp             -------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHHT-SC-----CCCGG
T ss_pred             CcccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChHHHHHHHHhcC-CC-----CCcch
Confidence            3334456789999999999864   358999999999999999999999998655443322221111 10     11111


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ..   ....+.++.+++.+||+.||++||||+||+++|+.+
T Consensus       233 ~~---~~~~~~~l~~li~~cl~~dp~~RPt~~~il~~Le~l  270 (276)
T d1uwha_         233 KV---RSNCPKAMKRLMAECLKKKRDERPLFPQILASIELL  270 (276)
T ss_dssp             GS---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             hc---cccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence            00   112345788999999999999999999999999876

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.6e-55  Score=450.15  Aligned_cols=254  Identities=18%  Similarity=0.233  Sum_probs=206.6

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++.....   ....+.|.+|+++|++++|||||++++++.+++..|+|
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~---~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~iv   81 (271)
T d1nvra_           5 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---VDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF   81 (271)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC----------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhc---chHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEE
Confidence            4688889999999999999997 5799999999953221   22346799999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||||++|+|.+++..  ...+++.++..++.|+++||+|||   +.+||||||||+|||+++++.+||+|||+|+.....
T Consensus        82 mEy~~gg~L~~~l~~--~~~l~e~~~~~i~~qi~~al~ylH---~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~  156 (271)
T d1nvra_          82 LEYCSGGELFDRIEP--DIGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYN  156 (271)
T ss_dssp             EECCTTEEGGGGSBT--TTBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECEET
T ss_pred             EeccCCCcHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHH---HcCCccCcccHHHEEECCCCCEEEccchhheeeccC
Confidence            999999999999975  457999999999999999999999   789999999999999999999999999999987544


Q ss_pred             CCCCccccccccccccccccccCCcc-cccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRV-TMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      .........+||+.|||||++.+..+ +.++||||+||++|||+||+.||....................          
T Consensus       157 ~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~~~~~~~~~----------  226 (271)
T d1nvra_         157 NRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYL----------  226 (271)
T ss_dssp             TEECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHHHHTTCTTS----------
T ss_pred             CccccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCC----------
Confidence            33333456789999999999988776 6789999999999999999999975544332222211111100          


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        ......+.++.+++.+||+.||++|||++|+++|
T Consensus       227 --~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~h  260 (271)
T d1nvra_         227 --NPWKKIDSAPLALLHKILVENPSARITIPDIKKD  260 (271)
T ss_dssp             --TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             --CccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence              0011234567899999999999999999999874

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-54  Score=448.78  Aligned_cols=255  Identities=20%  Similarity=0.246  Sum_probs=199.9

Q ss_pred             hcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      +|+..+.||+|+||+||+|++.+++.||||+++..     ....++|.+|++++++++|||||+++|+|..++..++|||
T Consensus         6 ~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~-----~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E   80 (263)
T d1sm2a_           6 ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG-----AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFE   80 (263)
T ss_dssp             CEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSS-----SSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             HcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCC-----cCcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEE
Confidence            46677899999999999999988999999999532     2345789999999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      ||++|+|.+++... ...++|..+..|+.|+|+||+|||   +.+|+||||||+|||+|+++.+||+|||+++.......
T Consensus        81 ~~~~g~L~~~l~~~-~~~~~~~~~~~i~~qia~gl~~lH---~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~  156 (263)
T d1sm2a_          81 FMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY  156 (263)
T ss_dssp             CCTTCBHHHHHHTT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCTTCSGGGEEECGGGCEEECSCC----------
T ss_pred             ecCCCcHHHHhhcc-ccCCCHHHHHHHHHHHHHHHHhhh---ccceeecccchhheeecCCCCeEecccchheeccCCCc
Confidence            99999999998753 346899999999999999999999   78899999999999999999999999999987654332


Q ss_pred             CCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCch
Q 003296          716 TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSL  795 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  795 (833)
                      . ......||+.|||||++.+..|+.|+|||||||++|||+|+..|+.......+........ ..   ...+       
T Consensus       157 ~-~~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~-~~---~~~p-------  224 (263)
T d1sm2a_         157 T-SSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTG-FR---LYKP-------  224 (263)
T ss_dssp             ---------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCHHHHHHHHHHT-CC---CCCC-------
T ss_pred             e-eecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCCHHHHHHHHHhc-CC---CCCc-------
Confidence            2 2244679999999999999999999999999999999999655544444433333222111 11   0011       


Q ss_pred             hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296          796 AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR  833 (833)
Q Consensus       796 ~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r  833 (833)
                        ...+.++.+++.+||+.||++||||+||+++|++++
T Consensus       225 --~~~~~~l~~li~~cl~~~p~~Rps~~~il~~L~~i~  260 (263)
T d1sm2a_         225 --RLASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEIA  260 (263)
T ss_dssp             --TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             --cccCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHH
Confidence              112346789999999999999999999999999863

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-54  Score=442.03  Aligned_cols=249  Identities=22%  Similarity=0.315  Sum_probs=209.3

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++. +.........+.+.+|++++++++|||||++++++.+++..|+|
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~-~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~iv   84 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLF-KAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI   84 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEE-HHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEc-hHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEE
Confidence            4688889999999999999997 479999999994 33333445677899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||||++|+|.+++..  ...+++.++..|+.|+++||+|||   +.+||||||||+|||++.++.+||+|||+|+.....
T Consensus        85 mEy~~~g~L~~~l~~--~~~l~e~~~~~i~~qi~~al~~lH---~~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~  159 (263)
T d2j4za1          85 LEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS  159 (263)
T ss_dssp             EECCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCSCSCCCCC
T ss_pred             EeecCCCcHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeeeeccccceecCCCCEeecccceeeecCCC
Confidence            999999999999986  346999999999999999999999   789999999999999999999999999999866432


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      .    ....+||+.|||||++.+..|+.++|||||||++|||+||+.||.+...... ..........        ++. 
T Consensus       160 ~----~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~-~~~i~~~~~~--------~p~-  225 (263)
T d2j4za1         160 R----RTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET-YKRISRVEFT--------FPD-  225 (263)
T ss_dssp             C----CEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHH-HHHHHTTCCC--------CCT-
T ss_pred             c----ccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCHHHH-HHHHHcCCCC--------CCc-
Confidence            2    2457899999999999999999999999999999999999999976543222 2211111111        111 


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                           ..+.++.+++.+||+.||++|||++|+++|
T Consensus       226 -----~~s~~~~~li~~~L~~dp~~R~t~~eil~h  255 (263)
T d2j4za1         226 -----FVTEGARDLISRLLKHNPSQRPMLREVLEH  255 (263)
T ss_dssp             -----TSCHHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred             -----cCCHHHHHHHHHHccCCHhHCcCHHHHHcC
Confidence                 123467899999999999999999999874

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-54  Score=445.67  Aligned_cols=254  Identities=19%  Similarity=0.255  Sum_probs=207.8

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      ++|+..+.||+|+||+||+|.+++++.||||+++..     ....++|.+|+++|++++|||||+++|+|. ++..++||
T Consensus        13 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~-----~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~-~~~~~iv~   86 (272)
T d1qpca_          13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-----SMSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIIT   86 (272)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTT-----SSCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEE
T ss_pred             HHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccC-----cCCHHHHHHHHHHHHhCCCCCEeEEEeeec-cCCeEEEE
Confidence            357778899999999999999988899999999422     234578999999999999999999999875 45679999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      |||++|+|.+++.......++|.+++.|+.|||+||+|||   +.+|+||||||+|||+++++.+||+|||+|+......
T Consensus        87 Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH---~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~  163 (272)
T d1qpca_          87 EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE  163 (272)
T ss_dssp             ECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSC
T ss_pred             EeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCccchhheeeecccceeeccccceEEccCCc
Confidence            9999999999887543446999999999999999999999   7889999999999999999999999999999875433


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCc
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS  794 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (833)
                      . .......||+.|||||++.+..|+.++|||||||++|||+||..|+.......+...... ....      +..+   
T Consensus       164 ~-~~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~~~~~~~i~-~~~~------~~~p---  232 (272)
T d1qpca_         164 Y-TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLE-RGYR------MVRP---  232 (272)
T ss_dssp             E-ECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHH-TTCC------CCCC---
T ss_pred             c-ccccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCCHHHHHHHHH-hcCC------CCCc---
Confidence            2 223456799999999999988999999999999999999997666654444333222211 1111      0011   


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          795 LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       795 ~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                         ...+.++.+++.+||+.||++||||+||++.|++
T Consensus       233 ---~~~~~~l~~li~~cl~~~P~~Rpt~~ei~~~L~~  266 (272)
T d1qpca_         233 ---DNCPEELYQLMRLCWKERPEDRPTFDYLRSVLED  266 (272)
T ss_dssp             ---TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             ---ccChHHHHHHHHHHcCCCHhHCcCHHHHHHHhhh
Confidence               1223467899999999999999999999999986

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-53  Score=442.02  Aligned_cols=250  Identities=22%  Similarity=0.310  Sum_probs=208.9

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +.|+..+.||+|+||+||+|.. .+|+.||||+++..    .....+.+.+|+++|++++|||||+++++|.+++..|+|
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~----~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv   95 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQ----QQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVV   95 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGG----GCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecc----cChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEE
Confidence            3588899999999999999996 57999999999422    233467899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||||++|+|.+++.+   ..+++.++..|+.|++.||+|||   +.+||||||||+|||++.++.+||+|||+|+.....
T Consensus        96 mEy~~gg~L~~~~~~---~~l~~~~~~~i~~qi~~aL~yLH---~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~  169 (293)
T d1yhwa1          96 MEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE  169 (293)
T ss_dssp             EECCTTCBHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCST
T ss_pred             EEecCCCcHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHH---HCCCcccCCcHHHeEECCCCcEeeccchhheeeccc
Confidence            999999999998875   35999999999999999999999   789999999999999999999999999999987543


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      ..  .....+||+.|||||++.+..|+.++||||+||++|||+||+.||.+.................        ..  
T Consensus       170 ~~--~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~--------~~--  237 (293)
T d1yhwa1         170 QS--KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPE--------LQ--  237 (293)
T ss_dssp             TC--CBCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCC--------CS--
T ss_pred             cc--cccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCC--------CC--
Confidence            32  2356789999999999999999999999999999999999999998655433222111111000        00  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        .+...+.++.+++.+||+.||++|||++|+++|
T Consensus       238 --~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~H  270 (293)
T d1yhwa1         238 --NPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQH  270 (293)
T ss_dssp             --SGGGSCHHHHHHHHHHTCSSTTTSCCHHHHTTC
T ss_pred             --CcccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence              011234578899999999999999999999874

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-53  Score=446.99  Aligned_cols=256  Identities=16%  Similarity=0.250  Sum_probs=213.0

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||+||+|++. +|+.||||+++..     ....++|.+|+++|++++|||||+++|+|.+++..++|
T Consensus        17 ~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~-----~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv   91 (287)
T d1opja_          17 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-----TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII   91 (287)
T ss_dssp             GGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTT-----CSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred             HHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCc-----cchHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEE
Confidence            35677789999999999999974 6899999999422     23457899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||||++|+|.+++.......++|..+..|+.|+|+||+|||   +.+||||||||+|||+++++.+||+|||+|+.....
T Consensus        92 ~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH---~~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~  168 (287)
T d1opja_          92 TEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD  168 (287)
T ss_dssp             EECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSS
T ss_pred             eecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHH---HCCcccCccccCeEEECCCCcEEEccccceeecCCC
Confidence            99999999999998765678999999999999999999999   789999999999999999999999999999876543


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      .. .......||+.|||||++.+..|+.|+|||||||++|||++|..||.......+........ ..      +..+  
T Consensus       169 ~~-~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~~~~~~i~~~-~~------~~~~--  238 (287)
T d1opja_         169 TY-TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKD-YR------MERP--  238 (287)
T ss_dssp             SS-EEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTT-CC------CCCC--
T ss_pred             Cc-eeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcchHHHHHHHHhcC-CC------CCCC--
Confidence            32 22344568999999999999999999999999999999999887776555544332221111 10      0111  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                          ...+.++.+++.+||+.||++||||+||++.|+.+
T Consensus       239 ----~~~~~~l~~li~~cl~~dP~~Rps~~ei~~~L~~~  273 (287)
T d1opja_         239 ----EGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM  273 (287)
T ss_dssp             ----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHT
T ss_pred             ----ccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence                12345788999999999999999999999999875

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-53  Score=442.81  Aligned_cols=252  Identities=18%  Similarity=0.248  Sum_probs=206.3

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++. +.........+.|.+|+++|++++|||||+++++|.+++..|+|
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~-~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~iv   86 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILE-KRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG   86 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEE-HHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEe-hHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEE
Confidence            4688899999999999999997 579999999994 33333445567899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||||++|+|.+++..  .+.+++..+..++.|++.||+|||   +.+||||||||+|||+++++.+||+|||+|+.....
T Consensus        87 mEy~~gg~L~~~~~~--~~~l~e~~~~~~~~qi~~al~ylH---~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~  161 (288)
T d1uu3a_          87 LSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE  161 (288)
T ss_dssp             ECCCTTEEHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECC--
T ss_pred             EEccCCCCHHHhhhc--cCCCCHHHHHHHHHHHHHHHHhhc---cccEEcCcCCccccccCCCceEEecccccceecccC
Confidence            999999999999886  356999999999999999999999   789999999999999999999999999999987544


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      .......+.+||+.|||||++.+..|+.++||||+||++|||+||+.||.+.+..... ........        .++  
T Consensus       162 ~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~-~~i~~~~~--------~~p--  230 (288)
T d1uu3a_         162 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIF-QKIIKLEY--------DFP--  230 (288)
T ss_dssp             --------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH-HHHHTTCC--------CCC--
T ss_pred             CcccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcCHHHHH-HHHHcCCC--------CCC--
Confidence            3333345678999999999999999999999999999999999999999865433222 11111100        111  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLR  827 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~  827 (833)
                          ...+.++.+++.+||+.||++|||++|+++
T Consensus       231 ----~~~s~~~~~li~~~L~~dP~~R~t~~e~~~  260 (288)
T d1uu3a_         231 ----EKFFPKARDLVEKLLVLDATKRLGCEEMEG  260 (288)
T ss_dssp             ----TTCCHHHHHHHHTTSCSSGGGSTTSGGGTC
T ss_pred             ----ccCCHHHHHHHHHHccCCHhHCcCHHHHcC
Confidence                112346789999999999999999998644

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.6e-53  Score=443.25  Aligned_cols=256  Identities=18%  Similarity=0.252  Sum_probs=194.9

Q ss_pred             hcCCccccccCcccEEEEEEcC-CC---ceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SG---MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~---~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~  631 (833)
                      .|+..++||+|+||+||+|+.. +|   ..||||++.....   ....++|.+|+++|++++|||||+++|+|..++..+
T Consensus        27 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~  103 (299)
T d1jpaa_          27 CVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYT---EKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVM  103 (299)
T ss_dssp             GEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCC---HHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCE
T ss_pred             hcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccC---HHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEE
Confidence            3455689999999999999974 33   3589999843211   223568999999999999999999999999999999


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      +|||||++|+|.+++... ...++|.++..|+.|||+||+|||   +.+||||||||+|||+++++.+||+|||+|+...
T Consensus       104 iv~Ey~~~g~L~~~~~~~-~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~  179 (299)
T d1jpaa_         104 IITEFMENGSLDSFLRQN-DGQFTVIQLVGMLRGIAAGMKYLA---DMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLE  179 (299)
T ss_dssp             EEEECCTTEEHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC-------
T ss_pred             EEEEecCCCcceeeeccc-cCCCCHHHHHHHHHHHHHHHHHHh---hCCCccCccccceEEECCCCcEEECCcccceEcc
Confidence            999999999999988753 346999999999999999999999   7899999999999999999999999999998775


Q ss_pred             CCCCCC---ccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccccccccc
Q 003296          712 PSKSTG---SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       712 ~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (833)
                      ......   ......||+.|||||++.+..|+.++|||||||++|||+| |+.||.+.... +..... .......    
T Consensus       180 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~-~~~~~i-~~~~~~~----  253 (299)
T d1jpaa_         180 DDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQ-DVINAI-EQDYRLP----  253 (299)
T ss_dssp             ----------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH-HHHHHH-HTTCCCC----
T ss_pred             CCCCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCCHH-HHHHHH-HcCCCCC----
Confidence            433221   1123568999999999999999999999999999999998 89999754432 222111 1111110    


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                          .    +...+.++.+++.+||+.||++||||+||+++|+++
T Consensus       254 ----~----~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~~L~~~  290 (299)
T d1jpaa_         254 ----P----PMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKM  290 (299)
T ss_dssp             ----C----CTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred             ----C----CccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence                0    012345688999999999999999999999999864

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-52  Score=429.00  Aligned_cols=254  Identities=19%  Similarity=0.252  Sum_probs=212.1

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      ++|+..+.||+|+||+||+|+.++++.||||+++..     ....++|.+|++++++++|||||+++|+|.+++..++||
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~-----~~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~   78 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-----SMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIIT   78 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESS-----SSCHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEE
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcC-----cCCHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEE
Confidence            367888999999999999999988999999999532     124578999999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+++|+|.+++... ...++|..+.+++.|+|+||+|||   +.+|+||||||+||++++++.+||+|||+++......
T Consensus        79 Ey~~~g~l~~~~~~~-~~~~~~~~~~~i~~qi~~gl~~LH---~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~  154 (258)
T d1k2pa_          79 EYMANGCLLNYLREM-RHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE  154 (258)
T ss_dssp             ECCTTEEHHHHHHSG-GGCCCHHHHHHHHHHHHHHHHHHH---HTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSS
T ss_pred             EccCCCcHHHhhhcc-ccCCcHHHHHHHHHHHHHHHHHHh---hcCcccccccceeEEEcCCCcEEECcchhheeccCCC
Confidence            999999999997653 346899999999999999999999   7899999999999999999999999999998765443


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      .. ......||+.|||||++.+..|+.|+|||||||++|||+| |+.||.+... .+.... .......   ..+     
T Consensus       155 ~~-~~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~-~~~~~~-i~~~~~~---~~p-----  223 (258)
T d1k2pa_         155 YT-SSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTN-SETAEH-IAQGLRL---YRP-----  223 (258)
T ss_dssp             CC-CCCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCH-HHHHHH-HHTTCCC---CCC-----
T ss_pred             ce-eecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCH-HHHHHH-HHhCCCC---CCc-----
Confidence            22 3345679999999999999999999999999999999998 8999975442 222221 1111110   011     


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                          ...+.++.+++.+||+.||++|||++||+++|++|
T Consensus       224 ----~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~di  258 (258)
T d1k2pa_         224 ----HLASEKVYTIMYSCWHEKADERPTFKILLSNILDV  258 (258)
T ss_dssp             ----TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHCC
T ss_pred             ----ccccHHHHHHHHHHccCCHhHCcCHHHHHHHhhCC
Confidence                12234788999999999999999999999999875

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-53  Score=439.39  Aligned_cols=256  Identities=17%  Similarity=0.248  Sum_probs=194.0

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec--CCceE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA--SDSAY  631 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~--~~~~~  631 (833)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++.....  .....+.|.+|+++|++++|||||++++++.+  ++.+|
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~--~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~   81 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSM--TEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLY   81 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTS--CHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEE
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhC--CHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEE
Confidence            5788899999999999999996 5799999999953221  12235679999999999999999999999975  45689


Q ss_pred             EEEeeCCCCChhhhhhcC--CCCCCCHHHHHHHHHHHHHHHHhhhcCC--CCCeeecCCCccceeeCCCCCceeccceee
Q 003296          632 LFYEYAPKGTLFDVLHGC--LENALDWASRYSIAVGVAQGLAFLHGFT--SNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~ylH~~~--~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                      +|||||++|+|.+++...  ....+++..++.++.|++.||+|||+..  ..+||||||||+|||++.++.+||+|||+|
T Consensus        82 ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a  161 (269)
T d2java1          82 IVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLA  161 (269)
T ss_dssp             EEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHH
T ss_pred             EEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccce
Confidence            999999999999998642  2356999999999999999999999532  245999999999999999999999999999


Q ss_pred             eeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc
Q 003296          708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (833)
                      +.......  .....+||+.|||||++.+..|+.++|||||||++|||+||+.||.+.... +...... . .....   
T Consensus       162 ~~~~~~~~--~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~~-~~~~~i~-~-~~~~~---  233 (269)
T d2java1         162 RILNHDTS--FAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK-ELAGKIR-E-GKFRR---  233 (269)
T ss_dssp             HHC-------------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHH-H-TCCCC---
T ss_pred             eecccCCC--ccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCHH-HHHHHHH-c-CCCCC---
Confidence            87654322  234678999999999999999999999999999999999999999754432 2221111 1 11111   


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        ++      ...+.++.+++.+||+.||++|||++|+++|
T Consensus       234 --~~------~~~s~~l~~li~~~L~~dp~~Rps~~ell~h  266 (269)
T d2java1         234 --IP------YRYSDELNEIITRMLNLKDYHRPSVEEILEN  266 (269)
T ss_dssp             --CC------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             --CC------cccCHHHHHHHHHHcCCChhHCcCHHHHHhC
Confidence              11      1223468899999999999999999999875

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-52  Score=432.90  Aligned_cols=247  Identities=21%  Similarity=0.279  Sum_probs=198.5

Q ss_pred             CCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec----CCceEE
Q 003296          558 NPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA----SDSAYL  632 (833)
Q Consensus       558 ~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~----~~~~~l  632 (833)
                      +..+.||+|+||+||+|++. +|+.||||++....  ......+.|.+|+++|++++|||||+++++|.+    +..+|+
T Consensus        12 ~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~--~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~i   89 (270)
T d1t4ha_          12 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRK--LTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL   89 (270)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGG--SCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhh--CCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEE
Confidence            44568999999999999974 78999999985322  112235679999999999999999999999875    345899


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCC--eeecCCCccceeeC-CCCCceeccceeeee
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNP--ILLLDLSTRNIFLK-SLKEPQIGDIELCKV  709 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~--iiHrdlk~~Nill~-~~~~~ki~dfgl~~~  709 (833)
                      |||||++|+|.+++++  ...+++.++..++.|+++||+|||   +.+  ||||||||+|||++ +++.+||+|||+|+.
T Consensus        90 vmE~~~~g~L~~~l~~--~~~~~~~~~~~~~~qi~~gl~yLH---~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~  164 (270)
T d1t4ha_          90 VTELMTSGTLKTYLKR--FKVMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL  164 (270)
T ss_dssp             EEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred             EEeCCCCCcHHHHHhc--cccccHHHHHHHHHHHHHHHHHHH---HCCCCEEeCCcChhhceeeCCCCCEEEeecCccee
Confidence            9999999999999986  356899999999999999999999   555  99999999999996 578999999999986


Q ss_pred             eCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          710 IDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      ....    ...+.+||+.|||||++.+ +|+.++|||||||++|||+||+.||.+.............. .. ....   
T Consensus       165 ~~~~----~~~~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~~~~~~~i~~~-~~-~~~~---  234 (270)
T d1t4ha_         165 KRAS----FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSG-VK-PASF---  234 (270)
T ss_dssp             CCTT----SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTT-CC-CGGG---
T ss_pred             ccCC----ccCCcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCCCCCcccHHHHHHHHHcC-CC-Cccc---
Confidence            4322    2246789999999998865 69999999999999999999999998655544333222211 11 0000   


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                             ....+.++.+++.+||+.||++|||++|+++|
T Consensus       235 -------~~~~~~~~~~li~~~l~~dp~~R~s~~ell~H  266 (270)
T d1t4ha_         235 -------DKVAIPEVKEIIEGCIRQNKDERYSIKDLLNH  266 (270)
T ss_dssp             -------GGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             -------CccCCHHHHHHHHHHccCCHhHCcCHHHHhCC
Confidence                   11123467899999999999999999999875

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-53  Score=441.13  Aligned_cols=252  Identities=15%  Similarity=0.196  Sum_probs=205.7

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +.|+..+.||+|+||+||+|+. .+|+.||||++....    ....+.|.+|+++|++++|||||+++++|.+++..|+|
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~----~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lv   87 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKS----EEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWIL   87 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSS----SGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCC----HHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEE
Confidence            3577788999999999999997 579999999995321    23457899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||||++|+|.+++.+. ...+++.++..++.|+++||+|||   +.+||||||||+|||++.++.+||+|||+|+.....
T Consensus        88 mEy~~~g~L~~~~~~~-~~~l~e~~~~~i~~qi~~gL~ylH---~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~  163 (288)
T d2jfla1          88 IEFCAGGAVDAVMLEL-ERPLTESQIQVVCKQTLDALNYLH---DNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRT  163 (288)
T ss_dssp             EECCTTEEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECHHH
T ss_pred             EecCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCEEEeecChhheeECCCCCEEEEechhhhccCCC
Confidence            9999999999998653 346999999999999999999999   789999999999999999999999999999865322


Q ss_pred             CCCCcccccccccccccccccc-----CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAY-----TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      .  ....+.+||+.|||||++.     ...|+.++|||||||++|||+||+.||.+.................       
T Consensus       164 ~--~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~~~~~i~~~~~~~-------  234 (288)
T d2jfla1         164 I--QRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPT-------  234 (288)
T ss_dssp             H--HHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHHSCCCC-------
T ss_pred             c--ccccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCC-------
Confidence            1  1224578999999999874     4568999999999999999999999998655433322211111000       


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                       ..    .+...+.++.+++.+||+.||++|||++|+++|
T Consensus       235 -~~----~~~~~s~~~~~li~~~L~~dp~~R~t~~ell~h  269 (288)
T d2jfla1         235 -LA----QPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQH  269 (288)
T ss_dssp             -CS----SGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             -CC----ccccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence             00    011234578899999999999999999999874

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-52  Score=435.82  Aligned_cols=255  Identities=18%  Similarity=0.233  Sum_probs=204.5

Q ss_pred             hcCCccc-cccCcccEEEEEEcC---CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296          556 VANPLNV-ELKTRFSTYYKAVMP---SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       556 ~~~~~~~-ig~g~~g~vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~  631 (833)
                      ++...++ ||+|+||+||+|+..   ++..||||+++....   ....++|.+|+++|++++|||||+++|+|.+ +..|
T Consensus         9 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~---~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~~~   84 (285)
T d1u59a_           9 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTE---KADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALM   84 (285)
T ss_dssp             GEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCC---HHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEE
T ss_pred             CeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcC---HHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-CeEE
Confidence            3444554 999999999999863   456899999953221   2235789999999999999999999999875 5689


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeC
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVID  711 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~  711 (833)
                      +|||||++|+|.+++... ...++|.++..++.|+|+||+|||   +.+||||||||+|||++.++.+||+|||+|+...
T Consensus        85 lvmE~~~~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~gL~ylH---~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~  160 (285)
T d1u59a_          85 LVMEMAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALG  160 (285)
T ss_dssp             EEEECCTTEEHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEEETTEEEECCCTTCEECT
T ss_pred             EEEEeCCCCcHHHHhhcc-ccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCcCchhheeeccCCceeeccchhhhccc
Confidence            999999999999998653 346999999999999999999999   7899999999999999999999999999999875


Q ss_pred             CCCCC-CccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          712 PSKST-GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       712 ~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      ..... .......||+.|||||++.+..++.++|||||||++|||+| |+.||.+..... ... ....+...      .
T Consensus       161 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~~-~~~-~i~~~~~~------~  232 (285)
T d1u59a_         161 ADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE-VMA-FIEQGKRM------E  232 (285)
T ss_dssp             TCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHH-HHH-HHHTTCCC------C
T ss_pred             ccccccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCHHH-HHH-HHHcCCCC------C
Confidence            44322 12234679999999999998999999999999999999998 999998654322 111 11111111      1


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .+      ...+.++.+++.+||+.||++||||.+|++.|+.+
T Consensus       233 ~p------~~~~~~l~~li~~cl~~~p~~RPs~~~i~~~L~~~  269 (285)
T d1u59a_         233 CP------PECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC  269 (285)
T ss_dssp             CC------TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CC------CcCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence            11      12345778999999999999999999999998753

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.3e-52  Score=442.55  Aligned_cols=252  Identities=21%  Similarity=0.221  Sum_probs=191.9

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +.|+..+.||+|+||+||+|+.. +|+.||||++.....   ....+.|.+|+++|++++|||||++++++.+++..|+|
T Consensus         9 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~---~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lv   85 (307)
T d1a06a_           9 DIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKAL---EGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLI   85 (307)
T ss_dssp             GTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC-------------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHh---hhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            55888899999999999999974 799999999953221   12346788999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC---CCCCceeccceeeeee
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK---SLKEPQIGDIELCKVI  710 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~---~~~~~ki~dfgl~~~~  710 (833)
                      ||||++|+|.+++..  ...+++.++..++.|++.||+|||   +.+||||||||+|||+.   +++.+||+|||+|+..
T Consensus        86 mE~~~gg~L~~~l~~--~~~l~e~~~~~~~~qi~~al~ylH---~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~  160 (307)
T d1a06a_          86 MQLVSGGELFDRIVE--KGFYTERDASRLIFQVLDAVKYLH---DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKME  160 (307)
T ss_dssp             ECCCCSCBHHHHHHT--CSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSTTCCEEECCC------
T ss_pred             EeccCCCcHHHhhhc--ccCCCHHHHHHHHHHHHHHHHhhh---hceeeeEEecccceeecccCCCceEEEeccceeEEc
Confidence            999999999999976  456999999999999999999999   78999999999999994   5789999999999876


Q ss_pred             CCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccc
Q 003296          711 DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNV  790 (833)
Q Consensus       711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (833)
                      ....   ...+.+||+.|||||++.+..|+.++||||+||++|||+||+.||.+......+... .......        
T Consensus       161 ~~~~---~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i-~~~~~~~--------  228 (307)
T d1a06a_         161 DPGS---VLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQI-LKAEYEF--------  228 (307)
T ss_dssp             ---------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH-HTTCCCC--------
T ss_pred             cCCC---eeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHHHHHHHH-hccCCCC--------
Confidence            5433   234578999999999999999999999999999999999999999865443322211 1111111        


Q ss_pred             cCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          791 SRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       791 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        ..+.....+.++.+++.+||+.||++|||++|+++|
T Consensus       229 --~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~h  264 (307)
T d1a06a_         229 --DSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQH  264 (307)
T ss_dssp             --CTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             --CCccccCCCHHHHHHHHHHccCCHhHCcCHHHHhcC
Confidence              011111234578899999999999999999999985

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-52  Score=446.76  Aligned_cols=257  Identities=21%  Similarity=0.263  Sum_probs=206.7

Q ss_pred             HhcCCccccccCcccEEEEEEcCC------CceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecC
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPS------GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLAS  627 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~------~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~  627 (833)
                      ++|+..+.||+|+||+||+|+...      +..||||++....   .....+.|.+|+++|+++ +|||||+++++|.++
T Consensus        37 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~  113 (325)
T d1rjba_          37 ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA---DSSEREALMSELKMMTQLGSHENIVNLLGACTLS  113 (325)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC---------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEecccc---CHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeC
Confidence            467788999999999999998632      2369999984322   233457899999999998 899999999999999


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCC---------------------CCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCC
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLE---------------------NALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL  686 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~---------------------~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdl  686 (833)
                      +..|+|||||++|+|.++++....                     ..++|..++.|+.|+|+||+|||   +.+||||||
T Consensus       114 ~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH---~~~IiHRDl  190 (325)
T d1rjba_         114 GPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDL  190 (325)
T ss_dssp             SSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH---HTTEEETTC
T ss_pred             CeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccC
Confidence            999999999999999999975421                     25899999999999999999999   789999999


Q ss_pred             CccceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCC
Q 003296          687 STRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQG  765 (833)
Q Consensus       687 k~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~  765 (833)
                      ||+|||++.++.+||+|||+|+............+..||+.|||||++.+..|+.++|||||||++|||+| |+.||.+.
T Consensus       191 Kp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~  270 (325)
T d1rjba_         191 AARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGI  270 (325)
T ss_dssp             SGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred             chhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCC
Confidence            99999999999999999999987755443333345778999999999999999999999999999999998 89999754


Q ss_pred             ccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 003296          766 NELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLL  830 (833)
Q Consensus       766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~  830 (833)
                      ........ .......+      ..+      ...+.++.+++.+||+.||++||||+||+++|.
T Consensus       271 ~~~~~~~~-~~~~~~~~------~~p------~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~  322 (325)
T d1rjba_         271 PVDANFYK-LIQNGFKM------DQP------FYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLG  322 (325)
T ss_dssp             CCSHHHHH-HHHTTCCC------CCC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             CHHHHHHH-HHhcCCCC------CCC------CcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHh
Confidence            43222211 11111111      111      122457889999999999999999999999996

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-53  Score=448.37  Aligned_cols=264  Identities=16%  Similarity=0.223  Sum_probs=205.1

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      .++|+..+.||+|+||+||+|+. .+|+.||||+++...   .....+.+.+|+++|++++|||||+++++|.+++..|+
T Consensus         5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~---~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~i   81 (322)
T d1s9ja_           5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI---KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISI   81 (322)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCC---CTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEE
T ss_pred             ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhh---CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence            46788999999999999999996 589999999995321   22335689999999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      |||||++|+|.+++++  ...+++..+..++.|+++||.|||+  .++|+||||||+|||+++++.+||+|||+|+....
T Consensus        82 VmEy~~gg~L~~~l~~--~~~l~~~~~~~~~~qil~aL~yLH~--~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~  157 (322)
T d1s9ja_          82 CMEHMDGGSLDQVLKK--AGRIPEQILGKVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID  157 (322)
T ss_dssp             EEECCTTEEHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHH--HHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHH
T ss_pred             EEEcCCCCcHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHH--hCCEEccccCHHHeeECCCCCEEEeeCCCccccCC
Confidence            9999999999999986  3469999999999999999999993  24899999999999999999999999999987643


Q ss_pred             CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHH-hhccccccc--------
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLR-NSAQQDKLD--------  783 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~-~~~~~~~~~--------  783 (833)
                      ..    ..+.+||+.|||||++.+..|+.++||||+||++|||+||+.||.+.......... .........        
T Consensus       158 ~~----~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (322)
T d1s9ja_         158 SM----ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTP  233 (322)
T ss_dssp             HT----C---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTTHHHHHC------------------
T ss_pred             Cc----cccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCcccccc
Confidence            22    24578999999999999999999999999999999999999999754432111100 000000000        


Q ss_pred             ------ccccccccCC--------------chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          784 ------HILDFNVSRT--------------SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       784 ------~~~~~~~~~~--------------~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                            ...+......              .......+.++.+++.+||+.||++|||++|+++|
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~L~H  298 (322)
T d1s9ja_         234 GRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVH  298 (322)
T ss_dssp             ------------CCCCHHHHHHHHHTSCCCCCCBTTBCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             cccccccccccccchhHHHHHhhhhccCCccCccccCCHHHHHHHHHHcCCChhHCcCHHHHhhC
Confidence                  0000000000              00000123578899999999999999999999885

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-52  Score=432.74  Aligned_cols=249  Identities=18%  Similarity=0.219  Sum_probs=198.9

Q ss_pred             cccccCcccEEEEEEcC---CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeC
Q 003296          561 NVELKTRFSTYYKAVMP---SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYA  637 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~  637 (833)
                      +.||+|+||+||+|.+.   .++.||||+++...  ......++|.+|+++|++++|||||+++|+|.. +..++|||||
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~--~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~-~~~~lvmE~~   89 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEA--NDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMA   89 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-------CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES-SSEEEEEECC
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhh--CCHHHHHHHHHHHHHHHhCCCCCCceEEEEecc-CCEEEEEEcC
Confidence            46999999999999863   45789999994221  222335689999999999999999999999965 4678999999


Q ss_pred             CCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCC
Q 003296          638 PKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG  717 (833)
Q Consensus       638 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~  717 (833)
                      ++|+|.++++.  ...++|.++..|+.|||+||+|||   +.+||||||||+|||++.++.+|++|||+|+.........
T Consensus        90 ~~g~L~~~l~~--~~~l~~~~~~~i~~qi~~gl~ylH---~~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~  164 (277)
T d1xbba_          90 ELGPLNKYLQQ--NRHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYY  164 (277)
T ss_dssp             TTEEHHHHHHH--CTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEE
T ss_pred             CCCcHHHHHhh--ccCCCHHHHHHHHHHHHHHHhhHH---hCCcccCCCcchhhcccccCcccccchhhhhhcccccccc
Confidence            99999999986  456999999999999999999999   7889999999999999999999999999999875443221


Q ss_pred             -ccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccCCch
Q 003296          718 -SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTSL  795 (833)
Q Consensus       718 -~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  795 (833)
                       ......||+.|||||++.+..|+.++|||||||++|||+| |+.||.+.... +.. .....+...      ..+    
T Consensus       165 ~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~-~~~-~~i~~~~~~------~~p----  232 (277)
T d1xbba_         165 KAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS-EVT-AMLEKGERM------GCP----  232 (277)
T ss_dssp             EC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHH-HHH-HHHHTTCCC------CCC----
T ss_pred             ccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHH-HHH-HHHHcCCCC------CCC----
Confidence             2234679999999999999999999999999999999998 89999754432 211 111111111      011    


Q ss_pred             hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Q 003296          796 AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLN  831 (833)
Q Consensus       796 ~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~  831 (833)
                        ...+.++.+++.+||+.||++||||+||+++|+.
T Consensus       233 --~~~~~~~~~li~~cl~~dp~~RPs~~~i~~~L~~  266 (277)
T d1xbba_         233 --AGCPREMYDLMNLCWTYDVENRPGFAAVELRLRN  266 (277)
T ss_dssp             --TTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHH
T ss_pred             --cccCHHHHHHHHHHcCCCHhHCcCHHHHHHHhhC
Confidence              1234578899999999999999999999998875

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.9e-52  Score=441.26  Aligned_cols=250  Identities=20%  Similarity=0.257  Sum_probs=204.7

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEE
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      +..|+..+.||+|+||+||+|+. .+|+.||||++.... .......+.|.+|+++|++++|||||+++++|.+++..|+
T Consensus        14 ~~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~-~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~i   92 (309)
T d1u5ra_          14 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSG-KQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWL   92 (309)
T ss_dssp             HHHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCS-SCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEE
T ss_pred             HHhcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhh-ccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEE
Confidence            34688899999999999999996 579999999995322 1222334679999999999999999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      |||||++|+|..++..  ...++|.++..|+.||++||+|||   +.+||||||||+|||+++++.+||+|||+|+....
T Consensus        93 v~E~~~~g~l~~~~~~--~~~l~e~~~~~i~~qi~~aL~yLH---~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~  167 (309)
T d1u5ra_          93 VMEYCLGSASDLLEVH--KKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP  167 (309)
T ss_dssp             EEECCSEEHHHHHHHH--TSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS
T ss_pred             EEEecCCCchHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCCCcceEEECCCCCEEEeecccccccCC
Confidence            9999999999877665  456999999999999999999999   78999999999999999999999999999986532


Q ss_pred             CCCCCccccccccccccccccccC---CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYT---MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      .      ...+||+.|||||++.+   ..|+.++|||||||++|||++|+.||.+................   ...+  
T Consensus       168 ~------~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~~~~~~~i~~~~~~---~~~~--  236 (309)
T d1u5ra_         168 A------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESP---ALQS--  236 (309)
T ss_dssp             B------CCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCC---CCSC--
T ss_pred             C------CccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCC---CCCC--
Confidence            2      34689999999999864   45899999999999999999999999865544332222111100   0000  


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                              ...+.++.+++.+||+.||++|||++|+++|
T Consensus       237 --------~~~s~~~~~li~~~L~~dP~~Rpt~~ell~H  267 (309)
T d1u5ra_         237 --------GHWSEYFRNFVDSCLQKIPQDRPTSEVLLKH  267 (309)
T ss_dssp             --------TTSCHHHHHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred             --------CCCCHHHHHHHHHHCcCChhHCcCHHHHHhC
Confidence                    1123568899999999999999999999874

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-52  Score=435.64  Aligned_cols=257  Identities=18%  Similarity=0.245  Sum_probs=199.7

Q ss_pred             hcCCccccccCcccEEEEEEcCC-C----ceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          556 VANPLNVELKTRFSTYYKAVMPS-G----MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~~-~----~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      .|+..++||+|+||+||+|.+.. +    ..||||++.....   ....++|.+|+++|++++|||||+++|+|.+.+..
T Consensus         8 ~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~---~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~   84 (283)
T d1mqba_           8 CVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYT---EKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPM   84 (283)
T ss_dssp             TEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCC---HHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSE
T ss_pred             HeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccC---hHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCce
Confidence            46677899999999999999753 2    4799999942221   12346799999999999999999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      ++|||||++|++.+++... ...++|.++..++.|+|.||+|||   +.+|+||||||+|||++.++.+||+|||+|+..
T Consensus        85 ~~v~e~~~~~~l~~~~~~~-~~~~~~~~~~~i~~~i~~gl~~lH---~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~  160 (283)
T d1mqba_          85 MIITEYMENGALDKFLREK-DGEFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVL  160 (283)
T ss_dssp             EEEEECCTTEEHHHHHHHT-TTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC----
T ss_pred             EEEEEecccCcchhhhhcc-cccccHHHHHHHHHHHHHhhhhcc---ccccccCccccceEEECCCCeEEEcccchhhcc
Confidence            9999999999999988753 356999999999999999999999   789999999999999999999999999999876


Q ss_pred             CCCCCC-CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          711 DPSKST-GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       711 ~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      ...... .......||+.|||||++.+..|+.++|||||||++|||+||..|+.......+..... ..+...      .
T Consensus       161 ~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~~~~~~~~i-~~~~~~------~  233 (283)
T d1mqba_         161 EDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAI-NDGFRL------P  233 (283)
T ss_dssp             -------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHH-HTTCCC------C
T ss_pred             cCCCccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCCHHHHHHHH-hccCCC------C
Confidence            543221 12234678999999999999999999999999999999999777765544443332221 111110      1


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .+      ...+.++.+++.+||+.||++||||+||+++|+++
T Consensus       234 ~~------~~~~~~l~~li~~cl~~~p~~RPt~~eil~~L~~l  270 (283)
T d1mqba_         234 TP------MDCPSAIYQLMMQCWQQERARRPKFADIVSILDKL  270 (283)
T ss_dssp             CC------TTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred             Cc------hhhHHHHHHHHHHHCcCCHhHCcCHHHHHHHHHHH
Confidence            11      12345688999999999999999999999999764

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-52  Score=431.43  Aligned_cols=255  Identities=21%  Similarity=0.259  Sum_probs=203.6

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      ++|+..+.||+|+||.||+|++++++.||||+++..     ....+.|.+|+++|++++|||||+++|+|. ++..++||
T Consensus        17 ~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~-----~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~-~~~~~lv~   90 (285)
T d1fmka3          17 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-----TMSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVT   90 (285)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTT-----SSCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEE
T ss_pred             HHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcc-----cCCHHHHHHHHHHHHhcccCCEeEEEEEEe-cCCeEEEE
Confidence            367788999999999999999988889999999422     224578999999999999999999999985 46689999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      |||++|+|.+++.......++|.+++.|+.|||.||+|||   ..+|+||||||+|||+|+++.+||+|||+|+......
T Consensus        91 Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH---~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~  167 (285)
T d1fmka3          91 EYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE  167 (285)
T ss_dssp             CCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCTTC------
T ss_pred             EecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHh---hhheecccccceEEEECCCCcEEEcccchhhhccCCC
Confidence            9999999999987644456999999999999999999999   7889999999999999999999999999998765433


Q ss_pred             CCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCCc
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRTS  794 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (833)
                      .. ......||+.|||||++..+.++.++|||||||++|||+||..|+.......+........ ..      ....   
T Consensus       168 ~~-~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~~~~~~~i~~~-~~------~~~~---  236 (285)
T d1fmka3         168 YT-ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERG-YR------MPCP---  236 (285)
T ss_dssp             ---------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTT-CC------CCCC---
T ss_pred             ce-eeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHhc-CC------CCCC---
Confidence            22 2344679999999999999999999999999999999999877766555444333222211 11      0111   


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          795 LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       795 ~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                         ...+.++.+++.+||+.||++||||+||+++|++.
T Consensus       237 ---~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~~  271 (285)
T d1fmka3         237 ---PECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDY  271 (285)
T ss_dssp             ---TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTT
T ss_pred             ---cccCHHHHHHHHHHcccCHhHCcCHHHHHHHHhhh
Confidence               12345688999999999999999999999999863

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-51  Score=431.48  Aligned_cols=255  Identities=20%  Similarity=0.234  Sum_probs=209.6

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhh--hccChhHHHHHHHHHhcCCCCCcccceEEEecCCceE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIF--QLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAY  631 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~--~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~  631 (833)
                      +.|+..+.||+|+||+||+|+. .+|+.||||+++......  .....+.|.+|+++|++++|||||+++++|.+++..|
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~   89 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   89 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            5688889999999999999997 589999999995332111  1224578999999999999999999999999999999


Q ss_pred             EEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC----Cceeccceee
Q 003296          632 LFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK----EPQIGDIELC  707 (833)
Q Consensus       632 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~----~~ki~dfgl~  707 (833)
                      +|||||++|+|.+++..  ...+++..+..++.|++.||+|||   +.+||||||||+|||++.++    .+|++|||+|
T Consensus        90 iv~E~~~gg~L~~~i~~--~~~l~~~~~~~~~~qi~~al~yLH---~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a  164 (293)
T d1jksa_          90 LILELVAGGELFDFLAE--KESLTEEEATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLA  164 (293)
T ss_dssp             EEEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCSSSSSCCEEECCCTTC
T ss_pred             EEEEcCCCccccchhcc--ccccchhHHHHHHHHHHHHHHhhh---hcceeecccccceEEEecCCCcccceEecchhhh
Confidence            99999999999999976  346999999999999999999999   78999999999999998776    4899999999


Q ss_pred             eeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc
Q 003296          708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (833)
                      +......   ...+..||+.|||||++.+..|+.++||||+||++|||+||+.||.+......+... ...         
T Consensus       165 ~~~~~~~---~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i-~~~---------  231 (293)
T d1jksa_         165 HKIDFGN---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANV-SAV---------  231 (293)
T ss_dssp             EECTTSC---BCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH-HTT---------
T ss_pred             hhcCCCc---cccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCHHHHHHHH-Hhc---------
Confidence            8875433   234578999999999999989999999999999999999999999865443322111 111         


Q ss_pred             ccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          788 FNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                       ............+.++.+++.+||+.||++|||++|+++|
T Consensus       232 -~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~h  271 (293)
T d1jksa_         232 -NYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH  271 (293)
T ss_dssp             -CCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             -CCCCCchhcCCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence             0111111112334578899999999999999999999875

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=1.9e-51  Score=441.01  Aligned_cols=252  Identities=18%  Similarity=0.235  Sum_probs=208.3

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||.||+|+. .+|+.||||++.....    ...+.+.+|+++|++++|||||+++++|.+++..|+|
T Consensus        26 ~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~----~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv  101 (350)
T d1koaa2          26 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHE----SDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMI  101 (350)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSH----HHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEE
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccch----hhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            4688899999999999999997 5899999999953322    2346799999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC--CCCCceeccceeeeeeC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK--SLKEPQIGDIELCKVID  711 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~--~~~~~ki~dfgl~~~~~  711 (833)
                      ||||++|+|.+++... ...+++.++..|+.||+.||+|||   +.+||||||||+|||++  .++.+||+|||+|+...
T Consensus       102 mE~~~gg~L~~~l~~~-~~~l~e~~~~~i~~qi~~aL~ylH---~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~  177 (350)
T d1koaa2         102 YEFMSGGELFEKVADE-HNKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLD  177 (350)
T ss_dssp             ECCCCSCBHHHHHTCT-TSCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECC
T ss_pred             EEcCCCCCHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHH---hcCCeeeeechhHeeeccCCCCeEEEeecchheecc
Confidence            9999999999999653 346999999999999999999999   78999999999999996  45789999999999875


Q ss_pred             CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      ...   ...+.+||+.|||||++.+..|+.++||||+||++|||+||+.||.+..... .............        
T Consensus       178 ~~~---~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~-~~~~i~~~~~~~~--------  245 (350)
T d1koaa2         178 PKQ---SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDE-TLRNVKSCDWNMD--------  245 (350)
T ss_dssp             TTS---CEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHTCCCSC--------
T ss_pred             ccc---ccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCHHH-HHHHHHhCCCCCC--------
Confidence            433   2356789999999999999999999999999999999999999997554332 2222111111111        


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        .......+.++.+++.+||+.||++|||++|+++|
T Consensus       246 --~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~h  280 (350)
T d1koaa2         246 --DSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEH  280 (350)
T ss_dssp             --CGGGGGCCHHHHHHHHHHCCSSGGGSCCHHHHHHS
T ss_pred             --cccccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence              11111234578899999999999999999999986

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-50  Score=431.51  Aligned_cols=251  Identities=19%  Similarity=0.219  Sum_probs=210.3

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||.||+|+. .+|+.||||+++ +.........+.+.+|+++|++++|||||+++++|.+++.+|+|
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~-k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv   83 (337)
T d1o6la_           5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILR-KEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEE-HHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEc-hhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccc
Confidence            5788999999999999999997 589999999994 33333344567899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||||++|+|.+++..  ...+++..++.++.|++.||+|||   +.+||||||||+|||+++++.+||+|||+|+.....
T Consensus        84 ~ey~~gg~L~~~~~~--~~~~~e~~~~~~~~qil~al~ylH---~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~  158 (337)
T d1o6la_          84 MEYANGGELFFHLSR--ERVFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISD  158 (337)
T ss_dssp             EECCTTCBHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCT
T ss_pred             eeccCCCchhhhhhc--ccCCcHHHHHHHHHHHhhhhhhhh---hcCccccccCHHHeEecCCCCEEEeecccccccccC
Confidence            999999999999986  456899999999999999999999   789999999999999999999999999999876433


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                      ..  .....+||+.|||||++.+..|+.++||||+||++|||++|+.||.+.+.. +...........        ++  
T Consensus       159 ~~--~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~~-~~~~~i~~~~~~--------~p--  225 (337)
T d1o6la_         159 GA--TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE-RLFELILMEEIR--------FP--  225 (337)
T ss_dssp             TC--CBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHCCCC--------CC--
T ss_pred             Cc--ccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCHH-HHHHHHhcCCCC--------CC--
Confidence            22  335678999999999999999999999999999999999999999865432 222221111111        11  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCCC-----HHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARPK-----MKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rps-----~~evl~~  828 (833)
                          ...+.++.+++.+||++||++||+     ++|+++|
T Consensus       226 ----~~~s~~~~dli~~~L~~dP~~R~~~~~~~~~eil~H  261 (337)
T d1o6la_         226 ----RTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH  261 (337)
T ss_dssp             ----TTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred             ----ccCCHHHHHHHHhhccCCchhhcccccccHHHHHcC
Confidence                123456789999999999999995     8888875

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-50  Score=427.86  Aligned_cols=248  Identities=19%  Similarity=0.232  Sum_probs=208.5

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||+||+|+. .+|+.||||+++ +.........+.+.+|+++|++++|||||++++++.+++..|+|
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~-~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv   82 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLK-KEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI   82 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEE-HHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEc-hHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeE
Confidence            4688899999999999999997 579999999994 32333445567899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||||+||+|.+++..  ...+++..+..++.|++.||+|||   +.+||||||||+|||++.++.+||+|||+|+.....
T Consensus        83 mE~~~gg~l~~~~~~--~~~~~~~~~~~~~~qi~~al~~lH---~~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~  157 (316)
T d1fota_          83 MDYIEGGELFSLLRK--SQRFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV  157 (316)
T ss_dssp             ECCCCSCBHHHHHHH--TSSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSC
T ss_pred             eeecCCccccccccc--cccccccHHHHHHHHHHHhhhhhc---cCcEEccccCchheeEcCCCCEEEecCccceEeccc
Confidence            999999999999986  456889999999999999999999   889999999999999999999999999999986432


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                           ..+.+||+.|||||++.+..|+.++||||+||++|||+||+.||.+...... ..........        .+  
T Consensus       158 -----~~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~-~~~i~~~~~~--------~p--  221 (316)
T d1fota_         158 -----TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKT-YEKILNAELR--------FP--  221 (316)
T ss_dssp             -----BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHH-HHHHHHCCCC--------CC--
T ss_pred             -----cccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcCHHHH-HHHHHcCCCC--------CC--
Confidence                 2457899999999999999999999999999999999999999986543322 2111111111        10  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARP-----KMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~  828 (833)
                          ...+.++.+++.+||+.||++||     |++|+++|
T Consensus       222 ----~~~s~~~~~li~~~L~~dp~~R~~~~r~t~~~il~H  257 (316)
T d1fota_         222 ----PFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNH  257 (316)
T ss_dssp             ----TTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTS
T ss_pred             ----CCCCHHHHHHHHHHhhhCHHhccccchhhHHHHHcC
Confidence                01234678999999999999996     89999875

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-52  Score=425.50  Aligned_cols=250  Identities=21%  Similarity=0.303  Sum_probs=197.1

Q ss_pred             HhcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec-CCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA-SDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~-~~~~~lv  633 (833)
                      ++|+..+.||+|+||.||+|.. +|..||||+++..      ...++|.+|++++++++|||||+++|+|.+ ++.+|+|
T Consensus         7 ~~~~~~~~lG~G~fg~Vy~~~~-~~~~vAvK~i~~~------~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv   79 (262)
T d1byga_           7 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND------ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV   79 (262)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCC------C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEE
T ss_pred             HHeEEeEEEecCCCeEEEEEEE-CCeEEEEEEECcH------HHHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEE
Confidence            3567788999999999999998 5889999999422      235789999999999999999999999965 4678999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.++++......++|..+++|+.|||+||+|||   +.+|+||||||+||+++.++.+|++|||+++.....
T Consensus        80 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH---~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~  156 (262)
T d1byga_          80 TEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST  156 (262)
T ss_dssp             ECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEECCCCC-------
T ss_pred             EeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccc---cCceeccccchHhheecCCCCEeecccccceecCCC
Confidence            99999999999997643346899999999999999999999   789999999999999999999999999999875432


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      .     ....||+.|||||++.+..++.++|||||||++|||+| |+.||.... ..+...... ....      +....
T Consensus       157 ~-----~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~-~~~~~~~i~-~~~~------~~~~~  223 (262)
T d1byga_         157 Q-----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP-LKDVVPRVE-KGYK------MDAPD  223 (262)
T ss_dssp             ----------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC-GGGHHHHHT-TTCC------CCCCT
T ss_pred             C-----ccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCC-HHHHHHHHH-cCCC------CCCCc
Confidence            2     34578999999999998999999999999999999998 677776432 222222111 1111      11111


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR  833 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r  833 (833)
                            ..+.++.+++.+||+.||++||||.||+++|+++|
T Consensus       224 ------~~~~~~~~li~~cl~~dP~~Rps~~~l~~~L~~i~  258 (262)
T d1byga_         224 ------GCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIK  258 (262)
T ss_dssp             ------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             ------cCCHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHH
Confidence                  22346789999999999999999999999999875

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.4e-51  Score=432.30  Aligned_cols=259  Identities=21%  Similarity=0.277  Sum_probs=208.8

Q ss_pred             HhcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~  628 (833)
                      ++|+..+.||+|+||+||+|+..      +++.||||+++....   ....++|.+|+++|++++|||||+++++|...+
T Consensus        13 ~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~---~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~   89 (301)
T d1lufa_          13 NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEAS---ADMQADFQREAALMAEFDNPNIVKLLGVCAVGK   89 (301)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCC---HHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS
T ss_pred             HHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcC---hHHHHHHHHHHHHHHhcCCCCcccceeeeccCC
Confidence            56888899999999999999853      467899999953221   223578999999999999999999999999999


Q ss_pred             ceEEEEeeCCCCChhhhhhcCC----------------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCC
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCL----------------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDL  686 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~----------------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdl  686 (833)
                      ..++||||+++|+|.++++...                      ...++|.+++.|+.|+|.||+|||   +.+||||||
T Consensus        90 ~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH---~~~ivHrDl  166 (301)
T d1lufa_          90 PMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRDL  166 (301)
T ss_dssp             SCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCC
T ss_pred             ceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcc---cCCeEeeEE
Confidence            9999999999999999997421                      124899999999999999999999   789999999


Q ss_pred             CccceeeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCC-CcccCC
Q 003296          687 STRNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK-TAVNQG  765 (833)
Q Consensus       687 k~~Nill~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~-~p~~~~  765 (833)
                      ||+|||+|.++.+||+|||+|+...........++..||+.|||||++.+..|+.|+|||||||++|||++|. +||.+.
T Consensus       167 Kp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~  246 (301)
T d1lufa_         167 ATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGM  246 (301)
T ss_dssp             SGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS
T ss_pred             cccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCC
Confidence            9999999999999999999998765443333345678999999999999999999999999999999999996 566543


Q ss_pred             ccHHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296          766 NELAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR  833 (833)
Q Consensus       766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r  833 (833)
                      . ..+.... ...+.. ..     .+      ...+.++.+++.+||+.||++||||.||+++|++|.
T Consensus       247 ~-~~e~~~~-v~~~~~-~~-----~p------~~~~~~~~~li~~cl~~~P~~RPt~~ev~~~L~~i~  300 (301)
T d1lufa_         247 A-HEEVIYY-VRDGNI-LA-----CP------ENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMC  300 (301)
T ss_dssp             C-HHHHHHH-HHTTCC-CC-----CC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred             C-HHHHHHH-HHcCCC-CC-----CC------ccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhc
Confidence            3 3322222 111111 00     01      123356889999999999999999999999999873

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=4.6e-51  Score=438.37  Aligned_cols=252  Identities=17%  Similarity=0.218  Sum_probs=208.3

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +.|+..+.||+|+||+||+|+. .+|+.||||+++....    ...+.+.+|+++|++++|||||+++++|.+++..|+|
T Consensus        29 d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~----~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv  104 (352)
T d1koba_          29 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYP----LDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLI  104 (352)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSH----HHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEE
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcch----hHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            4688899999999999999996 5899999999953321    1246789999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC--CCCCceeccceeeeeeC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK--SLKEPQIGDIELCKVID  711 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~--~~~~~ki~dfgl~~~~~  711 (833)
                      ||||++|+|.+++... ...+++.++..|+.||+.||+|||   +.+||||||||+|||++  .++.+||+|||+|+...
T Consensus       105 mE~~~gg~L~~~~~~~-~~~l~e~~~~~i~~qi~~aL~ylH---~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~  180 (352)
T d1koba_         105 LEFLSGGELFDRIAAE-DYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLN  180 (352)
T ss_dssp             EECCCCCBHHHHTTCT-TCCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECC
T ss_pred             EEcCCCChHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccccccccccccCCCeEEEeecccceecC
Confidence            9999999999987653 346999999999999999999999   78999999999999998  57899999999999876


Q ss_pred             CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      ...   ...+..||+.|||||++.+..|+.++||||+||++|||+||+.||.+......... ..........       
T Consensus       181 ~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~-i~~~~~~~~~-------  249 (352)
T d1koba_         181 PDE---IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQN-VKRCDWEFDE-------  249 (352)
T ss_dssp             TTS---CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHH-HHHCCCCCCS-------
T ss_pred             CCC---ceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHH-HHhCCCCCCc-------
Confidence            443   23567899999999999999999999999999999999999999976544332211 1111111100       


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                         ......+.++.+++.+||+.||++|||++|+++|
T Consensus       250 ---~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~H  283 (352)
T d1koba_         250 ---DAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEH  283 (352)
T ss_dssp             ---STTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             ---ccccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence               0111234578899999999999999999999875

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-51  Score=432.19  Aligned_cols=255  Identities=20%  Similarity=0.284  Sum_probs=199.9

Q ss_pred             hcCCccccccCcccEEEEEEcC-CCc----eEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          556 VANPLNVELKTRFSTYYKAVMP-SGM----SYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~-~~~----~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      +|+..++||+|+||+||+|... +|+    .||||+++..   ......++|.+|+++|++++|||||+++|+|.++ ..
T Consensus        10 dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-~~   85 (317)
T d1xkka_          10 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA---TSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TV   85 (317)
T ss_dssp             TEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC-------CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-SE
T ss_pred             HCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccc---cCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-Ce
Confidence            5888899999999999999863 554    5888888422   2234567899999999999999999999999864 57


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      ++||||+.+|+|.+++... ...++|..++.|+.|||+||+|||   +.+||||||||+|||++.++.+||+|||+|+..
T Consensus        86 ~~v~e~~~~~~l~~~~~~~-~~~~~~~~~~~i~~qi~~gl~yLH---~~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~  161 (317)
T d1xkka_          86 QLITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL  161 (317)
T ss_dssp             EEEEECCTTCBHHHHHHHT-SSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCCSHHHHT
T ss_pred             eEEEEeccCCccccccccc-ccCCCHHHHHHHHHHHHHHHHHHH---HcCcccCcchhhcceeCCCCCeEeeccccceec
Confidence            8889999999999988764 456999999999999999999999   789999999999999999999999999999987


Q ss_pred             CCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          711 DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      .............||+.|||||++.++.|+.++|||||||++|||+| |+.||.+..... ... ....+....      
T Consensus       162 ~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~-~~~-~i~~~~~~~------  233 (317)
T d1xkka_         162 GAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE-ISS-ILEKGERLP------  233 (317)
T ss_dssp             TTTCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGG-HHH-HHHHTCCCC------
T ss_pred             ccccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHH-HHH-HHHcCCCCC------
Confidence            65443333445679999999999999999999999999999999999 788887543221 111 111111110      


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .+      ...+.++.+++.+||+.||++|||++||+++|+.+
T Consensus       234 ~p------~~~~~~~~~li~~cl~~dP~~RPs~~eil~~l~~~  270 (317)
T d1xkka_         234 QP------PICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKM  270 (317)
T ss_dssp             CC------TTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CC------cccCHHHHHHHHHhCCCChhhCcCHHHHHHHHHHH
Confidence            00      12345678999999999999999999999998764

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2e-50  Score=421.49  Aligned_cols=262  Identities=19%  Similarity=0.208  Sum_probs=204.0

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC----c
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD----S  629 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~----~  629 (833)
                      +.|+..+.||+|+||+||+|+. .+|+.||||+++.. ........+.|.+|+++|++++|||||++++++..++    .
T Consensus         7 drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~-~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~   85 (277)
T d1o6ya_           7 DRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRAD-LARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   85 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECST-TTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEE
T ss_pred             ceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchh-hccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCce
Confidence            4588889999999999999996 58999999999532 2222233567999999999999999999999998754    3


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                      .|+|||||++|+|.+++..  ...++|.++..++.|+++||+|||   +.+||||||||+|||++.++..+++|||.++.
T Consensus        86 ~~lvmE~~~g~~L~~~~~~--~~~l~~~~~~~i~~qi~~al~~lH---~~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~  160 (277)
T d1o6ya_          86 PYIVMEYVDGVTLRDIVHT--EGPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARA  160 (277)
T ss_dssp             EEEEEECCCEEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTSCEEECCCTTCEE
T ss_pred             EEEEEECCCCCEehhhhcc--cCCCCHHHHHHHHHHHHHHHHHHH---hCCccCccccCcccccCccccceeehhhhhhh
Confidence            8999999999999999876  456999999999999999999999   78999999999999999999999999999876


Q ss_pred             eCCCCC-CCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          710 IDPSKS-TGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       710 ~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ...... .......+||+.|||||++.+..|+.++||||+||++|||+||+.||.+...... ................ 
T Consensus       161 ~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~-~~~~~~~~~~~~~~~~-  238 (277)
T d1o6ya_         161 IADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSV-AYQHVREDPIPPSARH-  238 (277)
T ss_dssp             CC----------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHCCCCCGGGTS-
T ss_pred             hccccccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCHHHH-HHHHHhcCCCCCchhc-
Confidence            643322 1233457899999999999999999999999999999999999999986544332 2222222111111111 


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCC-CHHHHHHHHHhcC
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARP-KMKSVLRMLLNAR  833 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rp-s~~evl~~L~~~r  833 (833)
                               ...+.++.+++.+||++||++|| |++|+.+.|.++|
T Consensus       239 ---------~~~s~~l~~li~~~L~~dp~~R~~sa~~l~~~l~r~~  275 (277)
T d1o6ya_         239 ---------EGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH  275 (277)
T ss_dssp             ---------SSCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             ---------cCCCHHHHHHHHHHccCCHhHCHhHHHHHHHHHHHHh
Confidence                     12345788999999999999999 8999999998764

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-50  Score=419.89  Aligned_cols=255  Identities=19%  Similarity=0.259  Sum_probs=194.8

Q ss_pred             HhcCCccccccCcccEEEEEEcC----CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP----SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      ++|+..+.||+|+||.||+|+..    .+..||||+++...   .....+.|.+|+++|++++|||||+++|+|. ++..
T Consensus         7 ~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~---~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~   82 (273)
T d1mp8a_           7 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT---SDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPV   82 (273)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTT---SHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSC
T ss_pred             HHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEecccc---CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCeE
Confidence            45777899999999999999864    24578999984222   1223568999999999999999999999995 5678


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      |+|||||++|+|.+++... ...++|.+++.++.|+++||+|||   +.+||||||||+||++++++.+||+|||+|+..
T Consensus        83 ~iv~E~~~~g~l~~~~~~~-~~~l~~~~~~~~~~qi~~gl~ylH---~~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~  158 (273)
T d1mp8a_          83 WIIMELCTLGELRSFLQVR-KYSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYM  158 (273)
T ss_dssp             EEEEECCTTEEHHHHHHHT-TTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECC-------
T ss_pred             EEEEEeccCCcHHhhhhcc-CCCCCHHHHHHHHHHHHHHhhhhc---ccCeeccccchhheeecCCCcEEEccchhheec
Confidence            9999999999999987753 446999999999999999999999   789999999999999999999999999999876


Q ss_pred             CCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhccccccccccccc
Q 003296          711 DPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDFN  789 (833)
Q Consensus       711 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (833)
                      ...... ......||+.|||||++.+..|+.++|||||||++|||+| |++||.+........ . .......      .
T Consensus       159 ~~~~~~-~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~~~~~-~-i~~~~~~------~  229 (273)
T d1mp8a_         159 EDSTYY-KASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIG-R-IENGERL------P  229 (273)
T ss_dssp             -------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHH-H-HHTTCCC------C
T ss_pred             cCCcce-eccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCHHHHHH-H-HHcCCCC------C
Confidence            543322 2345678999999999999999999999999999999998 899997544322111 1 1111111      0


Q ss_pred             ccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          790 VSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       790 ~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .+      ...+.++.+++.+||+.||++|||++||+++|+++
T Consensus       230 ~~------~~~~~~~~~li~~cl~~dp~~Rps~~ei~~~L~~i  266 (273)
T d1mp8a_         230 MP------PNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI  266 (273)
T ss_dssp             CC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CC------CCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence            11      12345788999999999999999999999999875

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-50  Score=427.10  Aligned_cols=259  Identities=19%  Similarity=0.221  Sum_probs=198.6

Q ss_pred             HhcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecC
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLAS  627 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~  627 (833)
                      ++|+..+.||+|+||.||+|+..      +++.||||+++...   .....+.|.+|++++.++ +|||||.+++++..+
T Consensus        13 ~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~---~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~   89 (299)
T d1ywna1          13 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA---THSEHRALMSELKILIHIGHHLNVVNLLGACTKP   89 (299)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC-------CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECST
T ss_pred             HHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEcccc---CcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccC
Confidence            45778899999999999999852      45789999995221   122356788999988887 689999999998765


Q ss_pred             -CceEEEEeeCCCCChhhhhhcCC--------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCcccee
Q 003296          628 -DSAYLFYEYAPKGTLFDVLHGCL--------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIF  692 (833)
Q Consensus       628 -~~~~lv~ey~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nil  692 (833)
                       +..++|||||++|+|.++++...              ...++|.+++.++.|||+||+|||   +.+||||||||+|||
T Consensus        90 ~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH---~~~ivHrDlKp~NIL  166 (299)
T d1ywna1          90 GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNIL  166 (299)
T ss_dssp             TSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEE
T ss_pred             CCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHH---hCCCcCCcCCcccee
Confidence             46899999999999999997532              235899999999999999999999   789999999999999


Q ss_pred             eCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCC-CcccCCccHHHH
Q 003296          693 LKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK-TAVNQGNELAKW  771 (833)
Q Consensus       693 l~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~-~p~~~~~~~~~~  771 (833)
                      +++++.+||+|||+|+..............+||+.|||||++.+..++.++|||||||++|||+||. +||.+...... 
T Consensus       167 l~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~~~-  245 (299)
T d1ywna1         167 LSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE-  245 (299)
T ss_dssp             ECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHH-
T ss_pred             ECCCCcEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCHHHH-
Confidence            9999999999999998765444333445678999999999999999999999999999999999975 56764433222 


Q ss_pred             HHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          772 VLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      +......+...      ..+      ...+.++.+++.+||+.||++||||+||+++|+++
T Consensus       246 ~~~~~~~~~~~------~~~------~~~~~~l~~li~~cl~~dP~~Rpt~~eil~~L~~i  294 (299)
T d1ywna1         246 FCRRLKEGTRM------RAP------DYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL  294 (299)
T ss_dssp             HHHHHHHTCCC------CCC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHhcCCCC------CCC------ccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence            22222111111      111      11234678999999999999999999999999875

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-49  Score=426.76  Aligned_cols=248  Identities=15%  Similarity=0.180  Sum_probs=208.4

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||.||+|+. .+|+.||||++. +.........+.+.+|+++|++++|||||++++++...+..++|
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~-~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v  119 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILD-KQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV  119 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEE-HHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEc-hHHccCHHHHHHHHHHHHHHHHcCCCcEeecccccccccccccc
Confidence            4688889999999999999997 589999999994 33333445567899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      |||+++|+|.+++..  ...+++..+..|+.|++.||.|||   +.+||||||||+|||++.++.+||+|||+|+.....
T Consensus       120 ~e~~~~g~l~~~l~~--~~~l~e~~~~~i~~qi~~aL~yLH---~~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~  194 (350)
T d1rdqe_         120 MEYVAGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR  194 (350)
T ss_dssp             EECCTTCBHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC
T ss_pred             cccccccchhhhHhh--cCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCcCCHHHcccCCCCCEEeeeceeeeecccc
Confidence            999999999999976  346999999999999999999999   789999999999999999999999999999987532


Q ss_pred             CCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccCC
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSRT  793 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (833)
                           ..+.+||+.|||||++.+..|+.++||||+||++|||+||+.||.+..... ...........        .+  
T Consensus       195 -----~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~-~~~~i~~~~~~--------~p--  258 (350)
T d1rdqe_         195 -----TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQ-IYEKIVSGKVR--------FP--  258 (350)
T ss_dssp             -----BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCCCC--------CC--
T ss_pred             -----cccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcCHHH-HHHHHhcCCCC--------CC--
Confidence                 245789999999999999999999999999999999999999997654322 22211111100        00  


Q ss_pred             chhHHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296          794 SLAVRSQMLTVLKVAVACVSVSPEARP-----KMKSVLRM  828 (833)
Q Consensus       794 ~~~~~~~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~  828 (833)
                          ...+.++.+++.+||+.||++|+     |++|+++|
T Consensus       259 ----~~~s~~~~~li~~~L~~dP~kR~~~~r~t~~ell~H  294 (350)
T d1rdqe_         259 ----SHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNH  294 (350)
T ss_dssp             ----TTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTS
T ss_pred             ----ccCCHHHHHHHHHHhhhCHHhccccccccHHHHHcC
Confidence                12234678999999999999994     89999874

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-50  Score=426.34  Aligned_cols=252  Identities=16%  Similarity=0.124  Sum_probs=202.5

Q ss_pred             HhcCCc-cccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEec----C
Q 003296          555 AVANPL-NVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLA----S  627 (833)
Q Consensus       555 ~~~~~~-~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~----~  627 (833)
                      ++|+.. ++||+|+||+||+|+. .+|+.||||+++.         .+.+.+|++++.++ +|||||+++++|.+    +
T Consensus        11 ~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~---------~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~   81 (335)
T d2ozaa1          11 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD---------CPKARREVELHWRASQCPHIVRIVDVYENLYAGR   81 (335)
T ss_dssp             GTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEC---------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTE
T ss_pred             cCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECC---------cHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCC
Confidence            467765 4699999999999996 5899999999942         24678999997665 89999999999875    4


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC---CCCceeccc
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS---LKEPQIGDI  704 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~---~~~~ki~df  704 (833)
                      ..+|+|||||+||+|.+++.......+++.+++.|+.|++.||+|||   +.+|+||||||+|||+++   .+.+|++||
T Consensus        82 ~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH---~~~iiHRDiKp~NIll~~~~~~~~~Kl~DF  158 (335)
T d2ozaa1          82 KCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDF  158 (335)
T ss_dssp             EEEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCSSTTCCEEECCC
T ss_pred             CEEEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHH---HcCCcccccccccccccccccccccccccc
Confidence            56899999999999999998754557999999999999999999999   789999999999999985   457999999


Q ss_pred             eeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccc
Q 003296          705 ELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDH  784 (833)
Q Consensus       705 gl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~  784 (833)
                      |+|+......   .....+||+.|||||++.+..|+.++||||+||++|||+||+.||.+.......-       .....
T Consensus       159 G~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~-------~~~~~  228 (335)
T d2ozaa1         159 GFAKETTSHN---SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISP-------GMKTR  228 (335)
T ss_dssp             TTCEECCCCC---CCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC---------------C
T ss_pred             ceeeeccCCC---ccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHH-------HHHHH
Confidence            9999875443   2346789999999999999999999999999999999999999997543221100       00011


Q ss_pred             cccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          785 ILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       785 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      +.......+.......+.++.+++.+||+.||++|||+.|+++|
T Consensus       229 i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~h  272 (335)
T d2ozaa1         229 IRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH  272 (335)
T ss_dssp             CCSCSSSCCTTHHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HhcCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence            11111111222333456789999999999999999999999885

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-50  Score=423.85  Aligned_cols=253  Identities=20%  Similarity=0.263  Sum_probs=201.1

Q ss_pred             ccccccCcccEEEEEEcCC----CceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec-CCceEEEE
Q 003296          560 LNVELKTRFSTYYKAVMPS----GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA-SDSAYLFY  634 (833)
Q Consensus       560 ~~~ig~g~~g~vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~-~~~~~lv~  634 (833)
                      .++||+|+||+||+|++.+    ...||||+++...   .....++|.+|+++|++++|||||+++|+|.. ++..++||
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~---~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~  108 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT---DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVL  108 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCC---CHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEE
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECccc---CHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEE
Confidence            4689999999999999743    2368999995221   22335789999999999999999999999876 46799999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      |||++|+|.++++.. ....+|..+..++.|+|+||.|+|   +.+|+||||||+|||+++++.+||+|||+++......
T Consensus       109 E~~~~g~l~~~~~~~-~~~~~~~~~~~i~~qia~gL~~lH---~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~  184 (311)
T d1r0pa_         109 PYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE  184 (311)
T ss_dssp             ECCTTCBHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTT
T ss_pred             EEeecCchhhhhccc-cccchHHHHHHHHHHHHHhhhhhc---ccCcccCCccHHhEeECCCCCEEEecccchhhccccc
Confidence            999999999998854 446889999999999999999999   7899999999999999999999999999998765433


Q ss_pred             CC--CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          715 ST--GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       715 ~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      ..  .......||+.|+|||++.+..++.|+|||||||++|||+||+.||.......++....... ...   ..+    
T Consensus       185 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~~~~~i~~g-~~~---~~p----  256 (311)
T d1r0pa_         185 FDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG-RRL---LQP----  256 (311)
T ss_dssp             CCCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC------CHHHHHTT-CCC---CCC----
T ss_pred             cccceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHHcC-CCC---CCc----
Confidence            21  12234679999999999999999999999999999999999888887544333222221111 110   000    


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                           ...+.++.+++.+||+.||++||||.||+++|+++
T Consensus       257 -----~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~L~~i  291 (311)
T d1r0pa_         257 -----EYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAI  291 (311)
T ss_dssp             -----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -----ccCcHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence                 11234678999999999999999999999999876

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-50  Score=419.12  Aligned_cols=260  Identities=23%  Similarity=0.307  Sum_probs=198.5

Q ss_pred             HhcCCccccccCcccEEEEEEcC--CC--ceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCce
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP--SG--MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~--~~--~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      ++|+..+.||+|+||.||+|+..  ++  ..||||+++. .........++|.+|+++|++++|||||+++|+|.+ +..
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~-~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~~~   85 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKP-DVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-PPM   85 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC---------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSC
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEECh-hhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-cch
Confidence            46778899999999999999853  33  4789999842 222233345789999999999999999999999975 567


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      ++|||||++|++.+++... ...++|..++.++.|+|+||.|||   +.+|+||||||+||+++.++.+|++|||+++..
T Consensus        86 ~lv~e~~~~~~l~~~~~~~-~~~l~~~~~~~~~~qi~~gl~ylH---~~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~  161 (273)
T d1u46a_          86 KMVTELAPLGSLLDRLRKH-QGHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRAL  161 (273)
T ss_dssp             EEEEECCTTCBHHHHHHHH-GGGSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEEC
T ss_pred             heeeeeecCcchhhhhhcc-cCCCCHHHHHHHHHHHHHHHHHhh---hCCEeeeeecHHHhccccccceeeccchhhhhc
Confidence            9999999999999988753 346999999999999999999999   788999999999999999999999999999987


Q ss_pred             CCCCCCC-ccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHHHHHHhhcccccccccccc
Q 003296          711 DPSKSTG-SLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAKWVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       711 ~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (833)
                      ....... ......||+.|||||++.+..++.++|||||||++|||+| |+.||.+..... .............     
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~~-~~~~i~~~~~~~~-----  235 (273)
T d1u46a_         162 PQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQ-ILHKIDKEGERLP-----  235 (273)
T ss_dssp             CC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH-HHHHHHTSCCCCC-----
T ss_pred             ccCCCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHHH-HHHHHHhCCCCCC-----
Confidence            5443322 1234568899999999999999999999999999999998 899997544322 2222222211111     


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNAR  833 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~r  833 (833)
                       ..      ...+.++.+++.+||+.||++||||+||.+.|++++
T Consensus       236 -~~------~~~~~~l~~li~~cl~~dp~~RPt~~ei~~~L~~~~  273 (273)
T d1u46a_         236 -RP------EDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQ  273 (273)
T ss_dssp             -CC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred             -Cc------ccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHhcC
Confidence             00      122346789999999999999999999999999864

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.4e-50  Score=433.15  Aligned_cols=251  Identities=18%  Similarity=0.187  Sum_probs=201.5

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHH---HHHHhcCCCCCcccceEEEecCCce
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKE---LEVLGKLSNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E---~~~l~~l~H~niv~~~~~~~~~~~~  630 (833)
                      ++|+..++||+|+||.||+|+. .+|+.||||++. +...........+.+|   +++++.++|||||+++++|.+++..
T Consensus         4 ddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~-~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~   82 (364)
T d1omwa3           4 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLD-KKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL   82 (364)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEE-HHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred             HhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEc-hHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEE
Confidence            4688889999999999999997 479999999994 2222223334445444   7778888999999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      |+|||||++|+|.+++..  ...+++.++..++.||+.||+|||   +.+||||||||+|||+++++.+||+|||+|+..
T Consensus        83 ~ivmE~~~gg~L~~~l~~--~~~~~e~~~~~~~~qi~~aL~ylH---~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~  157 (364)
T d1omwa3          83 SFILDLMNGGDLHYHLSQ--HGVFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDF  157 (364)
T ss_dssp             EEEECCCCSCBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECSSSCEEECCCTTCEEC
T ss_pred             EEEEEecCCCcHHHHHHh--cccccHHHHHHHHHHHHHHHHHHH---HCCccceeeccceeEEcCCCcEEEeeeceeeec
Confidence            999999999999999986  456899999999999999999999   789999999999999999999999999999977


Q ss_pred             CCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHH-HHHHhhcccccccccccc
Q 003296          711 DPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAK-WVLRNSAQQDKLDHILDF  788 (833)
Q Consensus       711 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~  788 (833)
                      ....    ....+||+.|||||++.. ..|+.++||||+||++|||+||+.||.+...... .+........       .
T Consensus       158 ~~~~----~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~-------~  226 (364)
T d1omwa3         158 SKKK----PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMA-------V  226 (364)
T ss_dssp             SSSC----CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHHHHHSSSCC-------C
T ss_pred             CCCc----ccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCC-------C
Confidence            5432    245689999999999874 5689999999999999999999999975432211 1111111100       0


Q ss_pred             cccCCchhHHHHHHHHHHHHHhccCCCCCCCCC-----HHHHHHH
Q 003296          789 NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPK-----MKSVLRM  828 (833)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps-----~~evl~~  828 (833)
                      ..+      ...+.++.+++.+||+.||++|||     ++|+++|
T Consensus       227 ~~~------~~~s~~~~~li~~~L~~dP~~R~t~~~~~a~eil~H  265 (364)
T d1omwa3         227 ELP------DSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKES  265 (364)
T ss_dssp             CCC------SSSCHHHHHHHHHHTCSSTTTSTTTSSSTHHHHHTS
T ss_pred             CCC------CCCCHHHHHHHHHHcccCHHHhCCCcccCHHHHHcC
Confidence            000      122456889999999999999999     6888764

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-50  Score=424.89  Aligned_cols=255  Identities=24%  Similarity=0.276  Sum_probs=202.0

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCc--eEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecCCce
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGM--SYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLASDSA  630 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~--~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~~~~  630 (833)
                      ++|+..++||+|+||+||+|+.. +|.  .||||+++..   ......++|.+|+++|+++ +|||||+++|+|.+++..
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~   86 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEY---ASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYL   86 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC---------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEE
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcc---cChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCee
Confidence            46777899999999999999975 454  5788887422   1223457899999999999 799999999999999999


Q ss_pred             EEEEeeCCCCChhhhhhcC--------------CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC
Q 003296          631 YLFYEYAPKGTLFDVLHGC--------------LENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL  696 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~--------------~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~  696 (833)
                      ++|||||++|+|.++++..              ....++|.++..++.|||+||.|+|   +.+||||||||+|||++.+
T Consensus        87 ~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH---~~~iiHrDlkp~NIL~~~~  163 (309)
T d1fvra_          87 YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGEN  163 (309)
T ss_dssp             EEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGG
T ss_pred             EEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhh---cCCccccccccceEEEcCC
Confidence            9999999999999999753              1357999999999999999999999   7899999999999999999


Q ss_pred             CCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCC-cccCCccHHHHHHHh
Q 003296          697 KEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKT-AVNQGNELAKWVLRN  775 (833)
Q Consensus       697 ~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~-p~~~~~~~~~~~~~~  775 (833)
                      +.+||+|||+|+.......   .....||..|+|||.+.+..|+.++|||||||++|||++|.. ||.+ ....+.....
T Consensus       164 ~~~kl~DfG~a~~~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~-~~~~~~~~~i  239 (309)
T d1fvra_         164 YVAKIADFGLSRGQEVYVK---KTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCG-MTCAELYEKL  239 (309)
T ss_dssp             GCEEECCTTCEESSCEECC---C----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTT-CCHHHHHHHG
T ss_pred             CceEEcccccccccccccc---ccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCC-CCHHHHHHHH
Confidence            9999999999986543221   234679999999999999999999999999999999999765 5643 3333332221


Q ss_pred             hcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          776 SAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                       ......      ..+      ...+.++.+++.+||+.||++||||+||+++|+++
T Consensus       240 -~~~~~~------~~~------~~~~~~~~~li~~cl~~dP~~RPs~~eil~~L~~i  283 (309)
T d1fvra_         240 -PQGYRL------EKP------LNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM  283 (309)
T ss_dssp             -GGTCCC------CCC------TTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -HhcCCC------CCC------ccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence             111111      111      12345788999999999999999999999999875

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=4.2e-50  Score=416.60  Aligned_cols=255  Identities=20%  Similarity=0.237  Sum_probs=207.3

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchh-----hhccChhHHHHHHHHHhcCC-CCCcccceEEEecC
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKI-----FQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLAS  627 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~-----~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~  627 (833)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++......     ......+.+.+|+++|++++ |||||++++++.++
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~   82 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN   82 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence            4688899999999999999996 58999999998532211     11122356899999999997 99999999999999


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                      +..|+|||||++|||.++++.  ...+++.+++.++.||++||+|||   ..+|+||||||+|||++.++.+||+|||+|
T Consensus        83 ~~~~ivmE~~~~g~L~~~l~~--~~~l~e~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~Nill~~~~~~kl~DFG~a  157 (277)
T d1phka_          83 TFFFLVFDLMKKGELFDYLTE--KVTLSEKETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDMNIKLTDFGFS  157 (277)
T ss_dssp             SEEEEEEECCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTC
T ss_pred             cceEEEEEcCCCchHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHH---HcCCcccccccceEEEcCCCCeEEccchhe
Confidence            999999999999999999976  457999999999999999999999   789999999999999999999999999999


Q ss_pred             eeeCCCCCCCccccccccccccccccccC------CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccc
Q 003296          708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYT------MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDK  781 (833)
Q Consensus       708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~  781 (833)
                      +......   .....+||+.|+|||++.+      ..++.++||||+||++|||+||+.||.+.......... ......
T Consensus       158 ~~~~~~~---~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~~~~~~~i-~~~~~~  233 (277)
T d1phka_         158 CQLDPGE---KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMI-MSGNYQ  233 (277)
T ss_dssp             EECCTTC---CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH-HHTCCC
T ss_pred             eEccCCC---ceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCHHHHHHHH-HhCCCC
Confidence            9875433   2245789999999998753      34788999999999999999999999865543322111 111010


Q ss_pred             ccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          782 LDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       782 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .          ........+.++.+++.+||+.||++|||++||++|
T Consensus       234 ~----------~~~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~h  270 (277)
T d1phka_         234 F----------GSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAH  270 (277)
T ss_dssp             C----------CTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred             C----------CCcccccCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence            0          011112344578899999999999999999999876

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-49  Score=421.88  Aligned_cols=250  Identities=21%  Similarity=0.253  Sum_probs=206.0

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHh-cCCCCCcccceEEEecCCceEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLG-KLSNSNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~-~l~H~niv~~~~~~~~~~~~~l  632 (833)
                      ++|+..+.||+|+||+||+|+. .+|+.||||+++ +.........+.+.+|+.++. .++|||||++++++.+++..|+
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~-k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yi   80 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALK-KDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFF   80 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEE-HHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEc-hhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeE
Confidence            4688889999999999999997 479999999994 333333445677888888876 6899999999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCC
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDP  712 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~  712 (833)
                      |||||++|+|.++++.  ...+++.++..++.||+.||+|||   +.+|+||||||+|||+++++.+|++|||+|+....
T Consensus        81 vmEy~~~g~L~~~i~~--~~~~~e~~~~~~~~qi~~al~ylH---~~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~  155 (320)
T d1xjda_          81 VMEYLNGGDLMYHIQS--CHKFDLSRATFYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKENML  155 (320)
T ss_dssp             EEECCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred             EEeecCCCcHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCcccceeecCCCceeccccchhhhccc
Confidence            9999999999999986  346899999999999999999999   78999999999999999999999999999986643


Q ss_pred             CCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccccccccC
Q 003296          713 SKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVSR  792 (833)
Q Consensus       713 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (833)
                      ...  .....+||+.|||||++.+..|+.++||||+||++|||+||+.||.+......+. .......        ..+.
T Consensus       156 ~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~-~i~~~~~--------~~p~  224 (320)
T d1xjda_         156 GDA--KTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFH-SIRMDNP--------FYPR  224 (320)
T ss_dssp             TTC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH-HHHHCCC--------CCCT
T ss_pred             ccc--cccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCHHHHHH-HHHcCCC--------CCCc
Confidence            332  2345789999999999999999999999999999999999999997654332221 1111111        1111


Q ss_pred             CchhHHHHHHHHHHHHHhccCCCCCCCCCHH-HHHH
Q 003296          793 TSLAVRSQMLTVLKVAVACVSVSPEARPKMK-SVLR  827 (833)
Q Consensus       793 ~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~-evl~  827 (833)
                            ..+.++.+++.+||+.||++|||+. |+++
T Consensus       225 ------~~s~~~~dli~~~L~~dP~~R~s~~~~l~~  254 (320)
T d1xjda_         225 ------WLEKEAKDLLVKLFVREPEKRLGVRGDIRQ  254 (320)
T ss_dssp             ------TSCHHHHHHHHHHSCSSGGGSBTTBSCGGG
T ss_pred             ------cCCHHHHHHHHHhcccCCCCCcCHHHHHHh
Confidence                  1235688999999999999999995 6754

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-49  Score=421.61  Aligned_cols=251  Identities=15%  Similarity=0.180  Sum_probs=206.4

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      +.|+..+.||+|+||+||+|.. .+|+.||||+++....     ....+.+|+++|++++|||||++++++.+++.+|+|
T Consensus         5 ~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~-----~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lv   79 (321)
T d1tkia_           5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGT-----DQVLVKKEISILNIARHRNILHLHESFESMEELVMI   79 (321)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTH-----HHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEE
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcc-----cHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEE
Confidence            4578889999999999999997 4799999999953321     235688999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCC--CCceeccceeeeeeC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSL--KEPQIGDIELCKVID  711 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~--~~~ki~dfgl~~~~~  711 (833)
                      ||||++|+|.+++... ...+++.++..|+.|+++||+|||   +.+|+||||||+|||++.+  ..+|++|||+++...
T Consensus        80 mE~~~gg~L~~~i~~~-~~~l~e~~~~~i~~qi~~al~yLH---~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~  155 (321)
T d1tkia_          80 FEFISGLDIFERINTS-AFELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLK  155 (321)
T ss_dssp             ECCCCCCBHHHHHTSS-SCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECC
T ss_pred             EecCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HcCCCcccccccceeecCCCceEEEEcccchhhccc
Confidence            9999999999999753 336899999999999999999999   7899999999999999854  478999999998765


Q ss_pred             CCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccccc
Q 003296          712 PSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFNVS  791 (833)
Q Consensus       712 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (833)
                      ...   ......||+.|+|||...+..|+.++||||+||++|||++|+.||.+......+ ......          ...
T Consensus       156 ~~~---~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~~~~-~~i~~~----------~~~  221 (321)
T d1tkia_         156 PGD---NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQII-ENIMNA----------EYT  221 (321)
T ss_dssp             TTC---EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHH-HHHHHT----------CCC
T ss_pred             cCC---cccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCHHHHH-HHHHhC----------CCC
Confidence            332   234578999999999999999999999999999999999999999865443221 111111          111


Q ss_pred             CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          792 RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       792 ~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .....+...+.++.+++.+||+.||++|||++|+++|
T Consensus       222 ~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~h  258 (321)
T d1tkia_         222 FDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQH  258 (321)
T ss_dssp             CCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             CChhhccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            1111112234578899999999999999999999975

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-49  Score=419.83  Aligned_cols=260  Identities=18%  Similarity=0.218  Sum_probs=198.3

Q ss_pred             hcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHH--HHHHHHhcCCCCCcccceEEEecCC----c
Q 003296          556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFD--KELEVLGKLSNSNVMTPLAYVLASD----S  629 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~--~E~~~l~~l~H~niv~~~~~~~~~~----~  629 (833)
                      +|...+.||+|+||.||+|+. +|+.||||+++...       .+++.  +|+..+++++|||||+++|+|.+++    .
T Consensus         4 ~~~l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~~-------~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~   75 (303)
T d1vjya_           4 TIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE-------ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQ   75 (303)
T ss_dssp             GEEEEEEEECCSSSEEEEEEE-TTEEEEEEEECGGG-------HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEE
T ss_pred             EEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccc-------hhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceE
Confidence            455678899999999999997 78999999994221       23344  4555567889999999999998754    5


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcC-----CCCCeeecCCCccceeeCCCCCceeccc
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGF-----TSNPILLLDLSTRNIFLKSLKEPQIGDI  704 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~-----~~~~iiHrdlk~~Nill~~~~~~ki~df  704 (833)
                      .|+|||||++|+|.+++++   ..++|.++.+++.|+|.||+|+|+.     ..++||||||||+|||++.++.+||+||
T Consensus        76 ~~lv~Ey~~~g~L~~~l~~---~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DF  152 (303)
T d1vjya_          76 LWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADL  152 (303)
T ss_dssp             EEEEEECCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCC
T ss_pred             EEEEEecccCCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEec
Confidence            8999999999999999985   3599999999999999999999953     2469999999999999999999999999


Q ss_pred             eeeeeeCCCCCCC--ccccccccccccccccccCC------cccccCcchhhHHHHHHHHhCCCcccCCcc---------
Q 003296          705 ELCKVIDPSKSTG--SLSTVAGSVGYIPPEYAYTM------RVTMAGNVYSFGVILLELLTGKTAVNQGNE---------  767 (833)
Q Consensus       705 gl~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~---------  767 (833)
                      |+++.........  .....+||++|||||++.+.      .++.|+|||||||++|||+||..||.....         
T Consensus       153 Gl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~  232 (303)
T d1vjya_         153 GLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLV  232 (303)
T ss_dssp             TTCEEEETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTS
T ss_pred             CccccccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcc
Confidence            9999875443221  22357899999999997653      378899999999999999999988752111         


Q ss_pred             ----HHHHHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          768 ----LAKWVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       768 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                          ..........     ....++.+... ....+.+..+.+++.+||+.||++||||.||+++|+++
T Consensus       233 ~~~~~~~~~~~~~~-----~~~~~p~~~~~-~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i  295 (303)
T d1vjya_         233 PSDPSVEEMRKVVC-----EQKLRPNIPNR-WQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQL  295 (303)
T ss_dssp             CSSCCHHHHHHHHT-----TSCCCCCCCGG-GGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHh-----ccccCCCCCcc-cCChHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHH
Confidence                0111111111     11112222111 11224556788999999999999999999999999876

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-49  Score=417.15  Aligned_cols=258  Identities=20%  Similarity=0.235  Sum_probs=204.5

Q ss_pred             HhcCCccccccCcccEEEEEEcC--------CCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEe
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP--------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVL  625 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~  625 (833)
                      +.|+..+.||+|+||.||+|+..        ++..||||+++....   .....+|.+|+..+.++ +|||||+++++|.
T Consensus        13 ~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~---~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~   89 (299)
T d1fgka_          13 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDAT---EKDLSDLISEMEMMKMIGKHKNIINLLGACT   89 (299)
T ss_dssp             GGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCC---HHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             HHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccC---hHHHHHHHHHHHHHHHhcCCCeEEecccccc
Confidence            35667789999999999999852        235799999953221   22357899999999998 7999999999999


Q ss_pred             cCCceEEEEeeCCCCChhhhhhcCC--------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccce
Q 003296          626 ASDSAYLFYEYAPKGTLFDVLHGCL--------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNI  691 (833)
Q Consensus       626 ~~~~~~lv~ey~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Ni  691 (833)
                      +++..++|||||++|+|.++++...              ...++|.+++.++.|+|.||+|||   +.+||||||||+||
T Consensus        90 ~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH---~~~ivHrDiKp~Ni  166 (299)
T d1fgka_          90 QDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNV  166 (299)
T ss_dssp             SSSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGE
T ss_pred             cCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhh---hCCEEeeeecccce
Confidence            9999999999999999999997543              135899999999999999999999   78999999999999


Q ss_pred             eeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHh-CCCcccCCccHHH
Q 003296          692 FLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLT-GKTAVNQGNELAK  770 (833)
Q Consensus       692 ll~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~  770 (833)
                      |++.++.+||+|||+++...............||+.|||||++.++.|+.|+|||||||++|||+| |++||.+... .+
T Consensus       167 Ll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~-~~  245 (299)
T d1fgka_         167 LVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPV-EE  245 (299)
T ss_dssp             EECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH-HH
T ss_pred             eecCCCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCCH-HH
Confidence            999999999999999998765444434456789999999999999999999999999999999998 6888864432 22


Q ss_pred             HHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          771 WVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      .. .........      ..+.      ..+.++.+++.+||+.||++||||.||++.|+++
T Consensus       246 ~~-~~i~~~~~~------~~p~------~~~~~l~~li~~cl~~dP~~Rps~~eil~~L~~i  294 (299)
T d1fgka_         246 LF-KLLKEGHRM------DKPS------NCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI  294 (299)
T ss_dssp             HH-HHHHTTCCC------CCCS------SCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HH-HHHHcCCCC------CCCc------cchHHHHHHHHHHccCCHhHCcCHHHHHHHHHHH
Confidence            11 111111111      1111      1234688999999999999999999999999875

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-49  Score=418.30  Aligned_cols=262  Identities=19%  Similarity=0.216  Sum_probs=198.9

Q ss_pred             ccccccCcccEEEEEEc-CCCceEEEEEccccchhh-hccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEeeC
Q 003296          560 LNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIF-QLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYEYA  637 (833)
Q Consensus       560 ~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~-~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~ey~  637 (833)
                      .++||+|+||+||+|+. .+|+.||||+++...... .....+.+.+|+++|++++|||||++++++..++..|+|||||
T Consensus         3 l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~   82 (299)
T d1ua2a_           3 LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFM   82 (299)
T ss_dssp             EEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECC
T ss_pred             ceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhhh
Confidence            57899999999999997 479999999995332211 1223467999999999999999999999999999999999999


Q ss_pred             CCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCCCC
Q 003296          638 PKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKSTG  717 (833)
Q Consensus       638 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~~~  717 (833)
                      ++|++..+...  ...+++.++..++.|++.||+|||   +.+|+||||||+|||+++++.+||+|||+|+.......  
T Consensus        83 ~~~~~~~~~~~--~~~l~~~~~~~~~~qil~aL~~lH---~~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~--  155 (299)
T d1ua2a_          83 ETDLEVIIKDN--SLVLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNR--  155 (299)
T ss_dssp             SEEHHHHHTTC--CSSCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCC--
T ss_pred             cchHHhhhhhc--ccCCCHHHHHHHHHHHHHHHHHhh---ccceecccCCcceEEecCCCccccccCccccccCCCcc--
Confidence            99887777654  456888999999999999999999   78999999999999999999999999999986643322  


Q ss_pred             ccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhc--c--ccccccccc-----
Q 003296          718 SLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSA--Q--QDKLDHILD-----  787 (833)
Q Consensus       718 ~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~--~--~~~~~~~~~-----  787 (833)
                      .....+||+.|||||++.+. .|+.++||||+||++|||+||+.||.+.............  .  .........     
T Consensus       156 ~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~  235 (299)
T d1ua2a_         156 AYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYV  235 (299)
T ss_dssp             CCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCC
T ss_pred             cccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHHHHHHHHHhcCCCChhhccchhccchhh
Confidence            22456899999999988654 5899999999999999999999999866544332211110  0  000000000     


Q ss_pred             --ccccCCch--hHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          788 --FNVSRTSL--AVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       788 --~~~~~~~~--~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        ........  .......++.+++.+||+.||++|||++|+++|
T Consensus       236 ~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~H  280 (299)
T d1ua2a_         236 TFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM  280 (299)
T ss_dssp             CCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             hhccCCCCChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHhCC
Confidence              00000000  001224578899999999999999999999975

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-49  Score=420.43  Aligned_cols=259  Identities=22%  Similarity=0.277  Sum_probs=207.5

Q ss_pred             HhcCCccccccCcccEEEEEEc------CCCceEEEEEccccchhhhccChhHHHHHHHHHhcC-CCCCcccceEEEecC
Q 003296          555 AVANPLNVELKTRFSTYYKAVM------PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL-SNSNVMTPLAYVLAS  627 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~~~~~~~  627 (833)
                      ++|+..+.||+|+||.||+|++      .+++.||||+++....   .....+|.+|+.+++++ +|||||+++|+|.++
T Consensus        23 ~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~---~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~   99 (311)
T d1t46a_          23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAH---LTEREALMSELKVLSYLGNHMNIVNLLGACTIG   99 (311)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC---HHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccC---HHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeC
Confidence            3566788999999999999974      3567899999953221   22356799999999999 699999999999999


Q ss_pred             CceEEEEeeCCCCChhhhhhcCC----------------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccce
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCL----------------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNI  691 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~----------------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Ni  691 (833)
                      +..++|||||++|+|.++++...                ...++|..+..++.|||+||+|||   +.+||||||||+||
T Consensus       100 ~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH---~~~ivHrDLKp~NI  176 (311)
T d1t46a_         100 GPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNI  176 (311)
T ss_dssp             SSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGE
T ss_pred             CEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccccccc
Confidence            99999999999999999997532                125899999999999999999999   78899999999999


Q ss_pred             eeCCCCCceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhC-CCcccCCccHHH
Q 003296          692 FLKSLKEPQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTG-KTAVNQGNELAK  770 (833)
Q Consensus       692 ll~~~~~~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg-~~p~~~~~~~~~  770 (833)
                      +++.++.+|++|||+++..............+||+.|||||++.+..++.++|||||||++|||+|+ ++||........
T Consensus       177 l~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~~~~  256 (311)
T d1t46a_         177 LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSK  256 (311)
T ss_dssp             EEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHH
T ss_pred             cccccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCCHHHH
Confidence            9999999999999999977544433334557899999999999999999999999999999999995 555544333222


Q ss_pred             HHHHhhcccccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          771 WVLRNSAQQDKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                       +......+...      ..+      ...+.++.+++.+||+.||++||||+||+++|+++
T Consensus       257 -~~~~i~~~~~~------~~~------~~~~~~l~~Li~~cl~~dP~~RPs~~~il~~L~~~  305 (311)
T d1t46a_         257 -FYKMIKEGFRM------LSP------EHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQ  305 (311)
T ss_dssp             -HHHHHHHTCCC------CCC------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -HHHHHhcCCCC------CCc------ccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHh
Confidence             11111111110      000      12235688999999999999999999999999863

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-49  Score=417.39  Aligned_cols=258  Identities=19%  Similarity=0.209  Sum_probs=208.6

Q ss_pred             HhcCCccccccCcccEEEEEEcC------CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP------SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~  628 (833)
                      ++|...+.||+|+||+||+|++.      +++.||||+++...   .......|.+|++++++++|||||+++|+|..++
T Consensus        20 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~---~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~   96 (308)
T d1p4oa_          20 EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA---SMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ   96 (308)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS---CHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSS
T ss_pred             HHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECccc---ChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCC
Confidence            45667789999999999999863      46889999995221   2223467999999999999999999999999999


Q ss_pred             ceEEEEeeCCCCChhhhhhcCC--------CCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCce
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCL--------ENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQ  700 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~--------~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~k  700 (833)
                      ..++|||||++|+|.++++...        ...++|..+..++.|+|+||.|||   ..+|+||||||+|||+|+++.+|
T Consensus        97 ~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH---~~~ivHrDlk~~NiLld~~~~~K  173 (308)
T d1p4oa_          97 PTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVK  173 (308)
T ss_dssp             SCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCSGGGEEECTTCCEE
T ss_pred             ceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHh---hCCeeeceEcCCceeecCCceEE
Confidence            9999999999999999987421        235799999999999999999999   77899999999999999999999


Q ss_pred             eccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCC-CcccCCccHHHHHHHhhccc
Q 003296          701 IGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGK-TAVNQGNELAKWVLRNSAQQ  779 (833)
Q Consensus       701 i~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~-~p~~~~~~~~~~~~~~~~~~  779 (833)
                      |+|||+|+...............||+.|||||.+.+..++.++|||||||++|||+||+ .||.+ ....++..... ..
T Consensus       174 l~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~-~~~~~~~~~i~-~~  251 (308)
T d1p4oa_         174 IGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQG-LSNEQVLRFVM-EG  251 (308)
T ss_dssp             ECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTT-SCHHHHHHHHH-TT
T ss_pred             EeecccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCC-CCHHHHHHHHH-hC
Confidence            99999998765443333334567999999999999999999999999999999999996 55643 34333332221 11


Q ss_pred             ccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          780 DKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                      ....      .+      ...+.++.+++.+||+.||++||||+||+++|++.
T Consensus       252 ~~~~------~p------~~~~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~  292 (308)
T d1p4oa_         252 GLLD------KP------DNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEE  292 (308)
T ss_dssp             CCCC------CC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGG
T ss_pred             CCCC------Cc------ccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHh
Confidence            1110      01      12235788999999999999999999999999874

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-48  Score=410.91  Aligned_cols=269  Identities=17%  Similarity=0.229  Sum_probs=206.5

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLF  633 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv  633 (833)
                      ++|+..+.||+|+||+||+|+. .+|+.||||+++.. . ......+.+.+|+++|++++|||||++++++.+++..|+|
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~-~-~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv   79 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD-T-ETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLV   79 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC---------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehh-h-cChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEE
Confidence            4688899999999999999997 58999999999422 2 2223467899999999999999999999999999999999


Q ss_pred             EeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCC
Q 003296          634 YEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPS  713 (833)
Q Consensus       634 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~  713 (833)
                      ||||.+ ++.+++.......+++.++..++.|++.||+|||   +.+||||||||+|||++.++.+|++|||+|+.....
T Consensus        80 ~e~~~~-~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH---~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~  155 (298)
T d1gz8a_          80 FEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP  155 (298)
T ss_dssp             EECCSE-EHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCC
T ss_pred             EeecCC-chhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhh---cCCEEccccCchheeecccCcceeccCCcceeccCC
Confidence            999975 5555555444557999999999999999999999   788999999999999999999999999999876533


Q ss_pred             CCCCccccccccccccccccccCCc-ccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccccc---
Q 003296          714 KSTGSLSTVAGSVGYIPPEYAYTMR-VTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILDFN---  789 (833)
Q Consensus       714 ~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  789 (833)
                      ..  ......||+.|+|||++.... ++.++||||+||++|||++|+.||.+......+......... ..+...+.   
T Consensus       156 ~~--~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~  232 (298)
T d1gz8a_         156 VR--TYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGT-PDEVVWPGVTS  232 (298)
T ss_dssp             SB--CTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCC-CCTTTSTTGGG
T ss_pred             cc--cceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCHHHHHHHHHHhcCC-Cchhhcccccc
Confidence            32  234568999999999877655 578999999999999999999999866554433322111100 00000000   


Q ss_pred             -------c---cCCc--hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH--HHhc
Q 003296          790 -------V---SRTS--LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM--LLNA  832 (833)
Q Consensus       790 -------~---~~~~--~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~--L~~~  832 (833)
                             .   ....  ......+.++.+++.+||+.||++|||++|+++|  ++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~H~ff~~~  289 (298)
T d1gz8a_         233 MPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDV  289 (298)
T ss_dssp             STTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTC
T ss_pred             ccccccccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhCCHhhccC
Confidence                   0   0000  0011224578899999999999999999999987  5543

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=8.5e-48  Score=403.92  Aligned_cols=264  Identities=16%  Similarity=0.199  Sum_probs=202.5

Q ss_pred             hcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEEe
Q 003296          556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFYE  635 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~e  635 (833)
                      .|+..+.||+|+||+||+|+.++|+.||||+++...  ......+.|.+|+.+|++++|||||+++++|..++..++|||
T Consensus         3 ~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~--~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e   80 (286)
T d1ob3a_           3 KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEK--EDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFE   80 (286)
T ss_dssp             SEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSS--GGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEE
T ss_pred             CceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhh--cChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEE
Confidence            577889999999999999999999999999995332  223446789999999999999999999999999999999999


Q ss_pred             eCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCCC
Q 003296          636 YAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSKS  715 (833)
Q Consensus       636 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~~  715 (833)
                      |+.++.+..+...  ...+++.++..++.|++.||+|||   +.+||||||||+|||++.++.+|++|||.|........
T Consensus        81 ~~~~~~~~~~~~~--~~~l~~~~~~~i~~qi~~~L~~LH---~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~  155 (286)
T d1ob3a_          81 HLDQDLKKLLDVC--EGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVR  155 (286)
T ss_dssp             CCSEEHHHHHHTS--TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---
T ss_pred             eehhhhHHHHHhh--cCCcchhhhHHHHHHHHHHHHHhc---cCcEEecCCCCceeeEcCCCCEEecccccceecccCcc
Confidence            9988777766654  456999999999999999999999   78899999999999999999999999999987643322


Q ss_pred             CCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccc----ccc---cc--
Q 003296          716 TGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQD----KLD---HI--  785 (833)
Q Consensus       716 ~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~----~~~---~~--  785 (833)
                        ......||+.|+|||.+.+. .++.++||||+||++|||++|+.||.+................    ...   ..  
T Consensus       156 --~~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  233 (286)
T d1ob3a_         156 --KYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPK  233 (286)
T ss_dssp             --------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTT
T ss_pred             --ccceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCChhhccchhhhhh
Confidence              22456799999999998754 4689999999999999999999999865543332211110000    000   00  


Q ss_pred             ccccc----c-CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          786 LDFNV----S-RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       786 ~~~~~----~-~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .+...    . .........+.++.+++.+||+.||++|||++|+++|
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~H  281 (286)
T d1ob3a_         234 YDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEH  281 (286)
T ss_dssp             CCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             cccccccccCcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            00000    0 0001111234578899999999999999999999865

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-48  Score=403.68  Aligned_cols=244  Identities=20%  Similarity=0.273  Sum_probs=198.4

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchh--hhccChhHHHHHHHHHhcCC--CCCcccceEEEecCCc
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKI--FQLGSHHKFDKELEVLGKLS--NSNVMTPLAYVLASDS  629 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~--~~~~~~~~~~~E~~~l~~l~--H~niv~~~~~~~~~~~  629 (833)
                      +.|+..+.||+|+||+||+|+. .+|+.||||++......  ......+++.+|+++|++++  |||||++++++.+++.
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~   83 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS   83 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCe
Confidence            4578889999999999999997 58999999999532111  11122355789999999997  8999999999999999


Q ss_pred             eEEEEeeCCC-CChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC-CCCceeccceee
Q 003296          630 AYLFYEYAPK-GTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS-LKEPQIGDIELC  707 (833)
Q Consensus       630 ~~lv~ey~~~-g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~-~~~~ki~dfgl~  707 (833)
                      .|+||||+.+ +++.+++..  ...+++.++..++.|+++||+|||   +.+|+||||||+|||++. ++.+|++|||+|
T Consensus        84 ~~lv~e~~~~~~~l~~~~~~--~~~l~e~~~~~~~~qi~~al~~lH---~~~iiHrDiKp~NIll~~~~~~vkl~DFG~a  158 (273)
T d1xwsa_          84 FVLILERPEPVQDLFDFITE--RGALQEELARSFFWQVLEAVRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFGSG  158 (273)
T ss_dssp             EEEEEECCSSEEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTC
T ss_pred             EEEEEEeccCcchHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHH---HCCCccccCcccceEEecCCCeEEECccccc
Confidence            9999999986 688888875  356999999999999999999999   789999999999999985 478999999999


Q ss_pred             eeeCCCCCCCccccccccccccccccccCCcc-cccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc
Q 003296          708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRV-TMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL  786 (833)
Q Consensus       708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  786 (833)
                      +.....    ...+.+||+.|||||++.+..+ +.++||||+||++|||+||+.||......    ..   ...    ..
T Consensus       159 ~~~~~~----~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~i----~~---~~~----~~  223 (273)
T d1xwsa_         159 ALLKDT----VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEI----IR---GQV----FF  223 (273)
T ss_dssp             EECCSS----CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHH----HH---CCC----CC
T ss_pred             eecccc----cccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCchHH----hh---ccc----CC
Confidence            876432    2345789999999999987765 67899999999999999999999743211    10   000    01


Q ss_pred             cccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          787 DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       787 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      ..          ..+.++.+++.+||+.||++|||++|+++|
T Consensus       224 ~~----------~~s~~~~~li~~~L~~dp~~R~s~~eil~h  255 (273)
T d1xwsa_         224 RQ----------RVSSECQHLIRWCLALRPSDRPTFEEIQNH  255 (273)
T ss_dssp             SS----------CCCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             CC----------CCCHHHHHHHHHHccCCHhHCcCHHHHhcC
Confidence            11          123467899999999999999999999875

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-47  Score=405.00  Aligned_cols=266  Identities=16%  Similarity=0.167  Sum_probs=200.7

Q ss_pred             HHhcCCccccccCcccEEEEEEc-CC-CceEEEEEccccchhhhccChhHHHHHHHHHhcC---CCCCcccceEEEec--
Q 003296          554 EAVANPLNVELKTRFSTYYKAVM-PS-GMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKL---SNSNVMTPLAYVLA--  626 (833)
Q Consensus       554 ~~~~~~~~~ig~g~~g~vy~~~~-~~-~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l---~H~niv~~~~~~~~--  626 (833)
                      .+.|+..+.||+|+||+||+|++ .+ ++.||||+++...  ........+.+|+++|+.+   +|||||+++++|..  
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~--~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~   83 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQT--GEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR   83 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEB--CTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhh--ccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccc
Confidence            35788899999999999999996 34 6779999995322  1223345677888887766   79999999999863  


Q ss_pred             ---CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceecc
Q 003296          627 ---SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGD  703 (833)
Q Consensus       627 ---~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~d  703 (833)
                         ....++|||||++|++...... ....+++..++.++.|++.||+|||   +.+||||||||+|||+++++.+|++|
T Consensus        84 ~~~~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~qi~~aL~yLH---~~~ivHrDiKp~NILi~~~~~~kl~d  159 (305)
T d1blxa_          84 TDRETKLTLVFEHVDQDLTTYLDKV-PEPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLAD  159 (305)
T ss_dssp             CSSEEEEEEEEECCSCBHHHHHHHS-CTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECS
T ss_pred             cccCceEEEEEEeccCCchhhhhhc-cCCCCCHHHHHHHHHHHHHHHHHHH---hCCEEecCCCccEEEEcCCCCeeecc
Confidence               3468999999998776554443 3456899999999999999999999   78999999999999999999999999


Q ss_pred             ceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccc--
Q 003296          704 IELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDK--  781 (833)
Q Consensus       704 fgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~--  781 (833)
                      ||+++......   .....+||+.|||||++.+..|+.++||||+||++|||+||+.||.+.................  
T Consensus       160 fg~~~~~~~~~---~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~  236 (305)
T d1blxa_         160 FGLARIYSFQM---ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGE  236 (305)
T ss_dssp             CCSCCCCCGGG---GGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCG
T ss_pred             hhhhhhhcccc---cCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCch
Confidence            99988653222   3356789999999999999999999999999999999999999998665443322211100000  


Q ss_pred             --cc-------cccccccc-CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          782 --LD-------HILDFNVS-RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       782 --~~-------~~~~~~~~-~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                        ..       ........ ............+.+++.+||+.||++|||++|+++|
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~H  293 (305)
T d1blxa_         237 EDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSH  293 (305)
T ss_dssp             GGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             hcccccccchhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence              00       00000000 0000111234567899999999999999999999886

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-45  Score=392.72  Aligned_cols=267  Identities=15%  Similarity=0.176  Sum_probs=199.6

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEec-------
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLA-------  626 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~-------  626 (833)
                      +.|+..+.||+|+||+||+|+. .+|+.||||++... . ......+++.+|+++|++++||||+++++++..       
T Consensus        10 ~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~-~-~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~   87 (318)
T d3blha1          10 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLME-N-EKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNR   87 (318)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC------CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC-------
T ss_pred             CCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehh-h-cchHHHHHHHHHHHHHHHhcCCCccceEeeeecccccccc
Confidence            5688889999999999999997 58999999998432 1 223456789999999999999999999999865       


Q ss_pred             -CCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccce
Q 003296          627 -SDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIE  705 (833)
Q Consensus       627 -~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfg  705 (833)
                       ++..|+|||||+++.+......  ...++...++.++.|+++||.|||   +.+|+||||||+|||++.++.+|++|||
T Consensus        88 ~~~~~~iv~e~~~~~~~~~~~~~--~~~~~~~~~~~i~~qil~~l~~lH---~~~ivHrDlKp~NILl~~~~~~kl~dfg  162 (318)
T d3blha1          88 CKGSIYLVFDFCEHDLAGLLSNV--LVKFTLSEIKRVMQMLLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADFG  162 (318)
T ss_dssp             ---CEEEEEECCCEEHHHHHTCT--TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCT
T ss_pred             cCceEEEEEeccCCCccchhhhc--ccccccHHHHHHHHHHHHHHHHhc---cCCEEecCcCchheeecCCCcEEeeecc
Confidence             3468999999988777655443  456888999999999999999999   7899999999999999999999999999


Q ss_pred             eeeeeCCCCCC--CccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccc
Q 003296          706 LCKVIDPSKST--GSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL  782 (833)
Q Consensus       706 l~~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~  782 (833)
                      +++........  ....+.+||+.|+|||++.+. .|+.|+||||+||++|||++|+.||.+..................
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~~~~~~i~~~~~~~~  242 (318)
T d3blha1         163 LARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSIT  242 (318)
T ss_dssp             TCEECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCC
T ss_pred             eeeecccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHHHHHHHHHHhcCCCC
Confidence            99876532211  122346899999999998765 689999999999999999999999986554332221111100000


Q ss_pred             cc----cc--------cccccCCchh-----HHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          783 DH----IL--------DFNVSRTSLA-----VRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       783 ~~----~~--------~~~~~~~~~~-----~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .+    ..        ..........     .......+.+++.+||+.||++|||++|+++|
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~H  305 (318)
T d3blha1         243 PEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH  305 (318)
T ss_dssp             TTTSTTCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             hhhccccchhhhhhhhcccccccccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHcC
Confidence            00    00        0000000000     01123467899999999999999999999986

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-45  Score=397.63  Aligned_cols=260  Identities=19%  Similarity=0.202  Sum_probs=195.4

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC-----
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD-----  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~-----  628 (833)
                      +.|+..+.||+|+||+||+|+. .+|+.||||+++...  ......+.+.+|+++|++++|||||+++++|...+     
T Consensus        18 ~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~--~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~   95 (346)
T d1cm8a_          18 AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPF--QSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF   95 (346)
T ss_dssp             SSEEEEEEC------CEEEEEETTTCCEEEEEECSSTT--SSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred             CcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhh--cChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCcccccc
Confidence            4577889999999999999996 579999999995221  12223567899999999999999999999998754     


Q ss_pred             -ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          629 -SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       629 -~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                       .+|+||||| +++|..+.+.   ..+++..++.++.|++.||+|||   +.+||||||||+|||++.++.+|++|||+|
T Consensus        96 ~~~~lv~e~~-~~~l~~~~~~---~~l~~~~~~~~~~qi~~aL~~LH---~~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a  168 (346)
T d1cm8a_          96 TDFYLVMPFM-GTDLGKLMKH---EKLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLA  168 (346)
T ss_dssp             CCCEEEEECC-SEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             ceEEEEEecc-cccHHHHHHh---ccccHHHHHHHHHHHHHHHHHHH---hCCCcccccCcchhhcccccccccccccce
Confidence             579999999 5688887764   45999999999999999999999   789999999999999999999999999999


Q ss_pred             eeeCCCCCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc
Q 003296          708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL  786 (833)
Q Consensus       708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  786 (833)
                      +.....     .+..+||+.|||||++.+. .++.++||||+||++|||++|+.||.+......+............+..
T Consensus       169 ~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  243 (346)
T d1cm8a_         169 RQADSE-----MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFV  243 (346)
T ss_dssp             EECCSS-----CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHH
T ss_pred             eccCCc-----cccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHH
Confidence            876432     2457899999999998764 5689999999999999999999999866544332211111100000000


Q ss_pred             c--------------ccccC--CchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          787 D--------------FNVSR--TSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       787 ~--------------~~~~~--~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .              +....  ..........++.+++.+||+.||++|||++|+++|
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~H  301 (346)
T d1cm8a_         244 QRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAH  301 (346)
T ss_dssp             HTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             hhhcchhhhhhhccCCcccccchHHhccCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence            0              00000  000011223567899999999999999999999986

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-46  Score=401.57  Aligned_cols=259  Identities=19%  Similarity=0.175  Sum_probs=193.8

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC------C
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS------D  628 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~------~  628 (833)
                      +|+..++||+|+||+||+|++ .+|+.||||++....        +.+.+|+++|++++|||||+++++|...      .
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~--------~~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~   92 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK--------RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEV   92 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS--------SSCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCC
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccc--------hHHHHHHHHHHhcCCCCCCcEEEEEEecCccCCce
Confidence            477788999999999999997 479999999994221        2335899999999999999999998643      3


Q ss_pred             ceEEEEeeCCCCChhhhhhc-CCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC-Cceecccee
Q 003296          629 SAYLFYEYAPKGTLFDVLHG-CLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK-EPQIGDIEL  706 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~-~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~-~~ki~dfgl  706 (833)
                      ..|+|||||++|.+..+.+. .....+++.+++.++.|+++||+|||   +.+|+||||||+|||++.++ .+||+|||+
T Consensus        93 ~~~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH---~~~IiHrDiKp~NILl~~~~~~~kl~DFG~  169 (350)
T d1q5ka_          93 YLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGS  169 (350)
T ss_dssp             EEEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTTCCEEECCCTT
T ss_pred             EEEEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHH---hcCCcccCCCcceEEEecCCCceeEecccc
Confidence            47899999987644443321 12456999999999999999999999   88999999999999999775 899999999


Q ss_pred             eeeeCCCCCCCccccccccccccccccccC-CcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccc---
Q 003296          707 CKVIDPSKSTGSLSTVAGSVGYIPPEYAYT-MRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKL---  782 (833)
Q Consensus       707 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~---  782 (833)
                      ++.......   ..+.+||+.|+|||.+.+ ..|+.++||||+||++|||++|+.||................+...   
T Consensus       170 a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~l~~i~~~~g~~~~~~  246 (350)
T d1q5ka_         170 AKQLVRGEP---NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQ  246 (350)
T ss_dssp             CEECCTTSC---CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCHHH
T ss_pred             hhhccCCcc---cccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHHHHHHHHHHHhCCChHHh
Confidence            987754332   245789999999998765 5689999999999999999999999976554332211110000000   


Q ss_pred             -----ccccccccc---CC---chhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          783 -----DHILDFNVS---RT---SLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       783 -----~~~~~~~~~---~~---~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                           ....+....   ..   .........++.+++.+||+.||++|||++|+++|
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  303 (350)
T d1q5ka_         247 IREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAH  303 (350)
T ss_dssp             HHHHCC---CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hhhhccchhhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence                 000000000   00   00011234568899999999999999999999975

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-46  Score=397.01  Aligned_cols=255  Identities=17%  Similarity=0.186  Sum_probs=202.5

Q ss_pred             HhcCCccccccCcccEEEEEEc----CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCC-CCcccceEEEecCCc
Q 003296          555 AVANPLNVELKTRFSTYYKAVM----PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSN-SNVMTPLAYVLASDS  629 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H-~niv~~~~~~~~~~~  629 (833)
                      ++|+..+.||+|+||+||+|+.    .+|+.||||+++...........+.+.+|+++|++++| ||||++++++.+.+.
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~  103 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  103 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCc
Confidence            4688899999999999999985    25899999999533222233456789999999999977 899999999999999


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                      .++|||||.+|+|.+++..  ...++......++.|++.||+|+|   +.+||||||||+|||++.++.+||+|||+|+.
T Consensus       104 ~~~v~e~~~~~~L~~~i~~--~~~~~e~~~~~~~~Qi~~al~~lH---~~~ivHrDiKp~Nill~~~~~vkL~DFG~a~~  178 (322)
T d1vzoa_         104 LHLILDYINGGELFTHLSQ--RERFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKE  178 (322)
T ss_dssp             EEEEECCCCSCBHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEESCSSEEEE
T ss_pred             eeeeeecccccHHHHHHHh--cccccHHHHHHHHHHHHHHHHHhh---cCCEEeccCCccceeecCCCCEEEeeccchhh
Confidence            9999999999999999986  345778888999999999999999   78899999999999999999999999999987


Q ss_pred             eCCCCCCCccccccccccccccccccCC--cccccCcchhhHHHHHHHHhCCCcccCCccH--HHHHHHhhccccccccc
Q 003296          710 IDPSKSTGSLSTVAGSVGYIPPEYAYTM--RVTMAGNVYSFGVILLELLTGKTAVNQGNEL--AKWVLRNSAQQDKLDHI  785 (833)
Q Consensus       710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~--~~~~~~~~~~~~~~~~~  785 (833)
                      ....... ...+..||+.|+|||.+.+.  .++.++||||+||++|||+||+.||.+....  ...+...... .     
T Consensus       179 ~~~~~~~-~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~i~~~~~~-~-----  251 (322)
T d1vzoa_         179 FVADETE-RAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILK-S-----  251 (322)
T ss_dssp             CCGGGGG-GGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHH-C-----
T ss_pred             hcccccc-cccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhccc-C-----
Confidence            6533322 23457899999999998754  4688999999999999999999999754321  1111111100 0     


Q ss_pred             ccccccCCchhHHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 003296          786 LDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARP-----KMKSVLRM  828 (833)
Q Consensus       786 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rp-----s~~evl~~  828 (833)
                       .+..      +...+.++.+++.+||++||++||     |++|+++|
T Consensus       252 -~~~~------~~~~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~H  292 (322)
T d1vzoa_         252 -EPPY------PQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH  292 (322)
T ss_dssp             -CCCC------CTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTS
T ss_pred             -CCCC------cccCCHHHHHHHHHHcccCHHHcCCCCcccHHHHHcC
Confidence             0000      112345788999999999999999     48899874

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-45  Score=394.26  Aligned_cols=265  Identities=17%  Similarity=0.191  Sum_probs=197.5

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCC----c
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASD----S  629 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~----~  629 (833)
                      ..|+..+.||+|+||+||+|+. .+|+.||||++....   .....+.+.+|+++|++++|||||++++++..+.    .
T Consensus         8 ~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~---~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~   84 (345)
T d1pmea_           8 PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFE---HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMK   84 (345)
T ss_dssp             TTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTT---CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCC
T ss_pred             CCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhc---ChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccc
Confidence            3477789999999999999986 589999999995221   1223567999999999999999999999997653    2


Q ss_pred             eEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          630 AYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       630 ~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                      .++++||+.+|+|.+++..   ..+++..++.++.|++.||+|||   +.+||||||||+|||+++++.+||+|||+|+.
T Consensus        85 ~~~l~~~~~~g~L~~~l~~---~~l~~~~i~~i~~qil~al~yLH---~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~  158 (345)
T d1pmea_          85 DVYLVTHLMGADLYKLLKT---QHLSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLARV  158 (345)
T ss_dssp             CEEEEEECCCEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             eEEEEEeecCCchhhhhhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCcceEEECCCCCEEEcccCceee
Confidence            3555667779999999975   35999999999999999999999   78999999999999999999999999999987


Q ss_pred             eCCCCCC-Ccccccccccccccccccc-CCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhcccccccccc-
Q 003296          710 IDPSKST-GSLSTVAGSVGYIPPEYAY-TMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHIL-  786 (833)
Q Consensus       710 ~~~~~~~-~~~~~~~gt~~y~aPE~~~-~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~-  786 (833)
                      ....... ......+||+.|+|||++. +..++.++||||+||++|||++|+.||.+......+............... 
T Consensus       159 ~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  238 (345)
T d1pmea_         159 ADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLN  238 (345)
T ss_dssp             CCGGGCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHH
T ss_pred             ccCCCccceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCHHHHHHHHhhhccCCChhhhh
Confidence            6443221 1234578999999999985 456789999999999999999999999865543322211110000000000 


Q ss_pred             -------------cccccCCc--hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          787 -------------DFNVSRTS--LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       787 -------------~~~~~~~~--~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                                   .+......  ........++.+++.+||+.||++|||++|+++|
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~h  295 (345)
T d1pmea_         239 CIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH  295 (345)
T ss_dssp             TCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             hhhhhhhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence                         00000000  0001123468899999999999999999999986

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-45  Score=385.22  Aligned_cols=264  Identities=17%  Similarity=0.195  Sum_probs=207.5

Q ss_pred             hcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~~~~~lv~  634 (833)
                      .|+..+.||+|+||+||+|++ .+|+.||||+++...  ......+.+.+|+++|++++|||||+++++|.+++..++||
T Consensus         3 ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~--~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~   80 (292)
T d1unla_           3 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDD--DDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVF   80 (292)
T ss_dssp             SEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSC--SSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhh--CChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEe
Confidence            577889999999999999997 588999999994322  12234578999999999999999999999999999999999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeeeeeCCCC
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCKVIDPSK  714 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~~~~~  714 (833)
                      ||+.++++..+++.  ...+++..+..++.|+++||+|||   ..+||||||||+|||++.++.+|++|||.|+......
T Consensus        81 ~~~~~~~l~~~~~~--~~~~~~~~~~~~~~q~~~aL~~lH---~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~  155 (292)
T d1unla_          81 EFCDQDLKKYFDSC--NGDLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPV  155 (292)
T ss_dssp             ECCSEEHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSCC
T ss_pred             eecccccccccccc--ccccchhHHHHHHHHHHHHHHHhh---cCCEeeecccCcccccccCCceeeeecchhhcccCCC
Confidence            99999999888775  456899999999999999999999   7899999999999999999999999999999875433


Q ss_pred             CCCccccccccccccccccccCCc-ccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccc--------cc
Q 003296          715 STGSLSTVAGSVGYIPPEYAYTMR-VTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLD--------HI  785 (833)
Q Consensus       715 ~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~--------~~  785 (833)
                      .  ......+++.|+|||++.... ++.++||||+||++|||++|+.||..+.+..+.............        ..
T Consensus       156 ~--~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (292)
T d1unla_         156 R--CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKL  233 (292)
T ss_dssp             S--CCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGS
T ss_pred             c--cceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCCHHHHHHHHHhhcCCCChhhhhhhhhc
Confidence            2  223456889999999987665 689999999999999999999998766555444332211111000        00


Q ss_pred             ccc-------cccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          786 LDF-------NVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       786 ~~~-------~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                      .+.       ..............++.+++.+||+.||++|||++||++|
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~H  283 (292)
T d1unla_         234 PDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQH  283 (292)
T ss_dssp             TTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             ccccccccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            000       0000001111234568899999999999999999999875

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=3.2e-44  Score=384.43  Aligned_cols=256  Identities=14%  Similarity=0.176  Sum_probs=199.1

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecC--Cce
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLAS--DSA  630 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~--~~~  630 (833)
                      ++|+..+.||+|+||+||+|+. .+|+.||||+++.       ...+++.+|+++|++++ |||||+++++|...  ...
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~-------~~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~  107 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP-------VKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTP  107 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS-------SCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSE
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECH-------HHHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCce
Confidence            4688899999999999999997 5899999999942       22467899999999996 99999999999854  569


Q ss_pred             EEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCC-Cceeccceeeee
Q 003296          631 YLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLK-EPQIGDIELCKV  709 (833)
Q Consensus       631 ~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~-~~ki~dfgl~~~  709 (833)
                      ++|||||++|+|.++.+     .+++.++..++.||+.||+|||   +.+||||||||+|||++.++ .+|++|||+|+.
T Consensus       108 ~~v~e~~~~~~L~~~~~-----~l~e~~i~~i~~qil~aL~~LH---~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~  179 (328)
T d3bqca1         108 ALVFEHVNNTDFKQLYQ-----TLTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEF  179 (328)
T ss_dssp             EEEEECCCSCBGGGTTT-----SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCGGGCEE
T ss_pred             eEEEeecCCCcHHHHhc-----CCCHHHHHHHHHHHHHHHHHHh---hcccccccccccceEEcCCCCeeeeccccccee
Confidence            99999999999987653     4899999999999999999999   88999999999999998655 589999999998


Q ss_pred             eCCCCCCCccccccccccccccccccCC-cccccCcchhhHHHHHHHHhCCCcccCCccHHH-HHHHhh-----------
Q 003296          710 IDPSKSTGSLSTVAGSVGYIPPEYAYTM-RVTMAGNVYSFGVILLELLTGKTAVNQGNELAK-WVLRNS-----------  776 (833)
Q Consensus       710 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~-~~~~~~-----------  776 (833)
                      ......   ....+||+.|+|||.+.+. .++.++||||+||++|||++|+.||........ +.....           
T Consensus       180 ~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~  256 (328)
T d3bqca1         180 YHPGQE---YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYI  256 (328)
T ss_dssp             CCTTCC---CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHH
T ss_pred             ccCCCc---ccccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhh
Confidence            754432   2457899999999998765 479999999999999999999999986543221 111000           


Q ss_pred             ----cc-ccccccccccccc------CCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          777 ----AQ-QDKLDHILDFNVS------RTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       777 ----~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                          .. .............      ...........++.+++.+||+.||++|||++|+++|
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~H  319 (328)
T d3bqca1         257 DKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEH  319 (328)
T ss_dssp             HHTTCCCCGGGGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hhcccccCcccchhcccccccchhhcccccccccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence                00 0000000000000      0011112234578899999999999999999999875

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-44  Score=388.87  Aligned_cols=261  Identities=18%  Similarity=0.169  Sum_probs=192.1

Q ss_pred             HhcCCccccccCcccEEEEEEcC-CCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC------
Q 003296          555 AVANPLNVELKTRFSTYYKAVMP-SGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS------  627 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~------  627 (833)
                      +.|+..+.||+|+||+||+|++. +|+.||||++.....  .....+++.+|++++++++|||||+++++|..+      
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~--~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~   94 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ--NQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF   94 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTS--SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhc--CHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccC
Confidence            35888899999999999999974 799999999953211  122345789999999999999999999999643      


Q ss_pred             CceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceee
Q 003296          628 DSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELC  707 (833)
Q Consensus       628 ~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~  707 (833)
                      ...|+|||||.+| +.+.+..    .+++.+++.++.|++.||+|||   +.+|+||||||+|||++.++.+|++|||++
T Consensus        95 ~~~~iv~Ey~~~~-l~~~~~~----~~~~~~i~~~~~qil~gl~~LH---~~giiHrDlKP~Nil~~~~~~~kl~df~~~  166 (355)
T d2b1pa1          95 QDVYLVMELMDAN-LCQVIQM----ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLA  166 (355)
T ss_dssp             CEEEEEEECCSEE-HHHHHTS----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC-
T ss_pred             ceeEEEEeccchH-HHHhhhc----CCCHHHHHHHHHHHHHHHHHhh---hcccccccCCccccccccccceeeechhhh
Confidence            5789999999765 5555542    4899999999999999999999   789999999999999999999999999998


Q ss_pred             eeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccc------
Q 003296          708 KVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDK------  781 (833)
Q Consensus       708 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~------  781 (833)
                      +......   .....+||+.|+|||++.+..++.++||||+||++|||++|+.||.+.................      
T Consensus       167 ~~~~~~~---~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~  243 (355)
T d2b1pa1         167 RTAGTSF---MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMK  243 (355)
T ss_dssp             -----------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHT
T ss_pred             hcccccc---ccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCCHHHHHHHHHHhccCCCHHHHH
Confidence            8765433   2345689999999999999999999999999999999999999997654433221111000000      


Q ss_pred             ---------------c-----cccc-cccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          782 ---------------L-----DHIL-DFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       782 ---------------~-----~~~~-~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                                     .     .... +.............+.++.+++.+||+.||++|||++|+++|
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~H  311 (355)
T d2b1pa1         244 KLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  311 (355)
T ss_dssp             TSCHHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             HhhhhHHHHhhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence                           0     0000 001111222234467789999999999999999999999976

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.8e-44  Score=377.75  Aligned_cols=257  Identities=14%  Similarity=0.141  Sum_probs=196.0

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEE-EecCCceEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAY-VLASDSAYL  632 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~-~~~~~~~~l  632 (833)
                      +.|+..+.||+|+||+||+|++ .+|+.||||++...      ...+++.+|++++++++|+|+|..+++ +.+.+..++
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~------~~~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~i   80 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVK------TKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVM   80 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESC------TTSCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEE
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchh------ccCHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEE
Confidence            3577889999999999999996 57999999998422      123568899999999998876666544 566788999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeC---CCCCceeccceeeee
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLK---SLKEPQIGDIELCKV  709 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~---~~~~~ki~dfgl~~~  709 (833)
                      ||||+ +|++.+.+... ...+++..+..++.|++.||+|||   +.+||||||||+|||++   .+..+|++|||+|+.
T Consensus        81 vme~~-~~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~  155 (299)
T d1ckia_          81 VMELL-GPSLEDLFNFC-SRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKK  155 (299)
T ss_dssp             EEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEE
T ss_pred             EEEEc-CCchhhhhhhc-cCCCcHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHhhccccccCCCceeeeeccCccee
Confidence            99999 55777766543 456999999999999999999999   78999999999999875   455799999999998


Q ss_pred             eCCCCCC-----CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccHHHH--HHHhhcccccc
Q 003296          710 IDPSKST-----GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNELAKW--VLRNSAQQDKL  782 (833)
Q Consensus       710 ~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~--~~~~~~~~~~~  782 (833)
                      .......     ......+||+.|||||++.+..++.++|||||||++|||+||+.||.........  .......    
T Consensus       156 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~----  231 (299)
T d1ckia_         156 YRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEK----  231 (299)
T ss_dssp             CBCTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHH----
T ss_pred             ccccccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcc----
Confidence            7543321     1224568999999999999999999999999999999999999999753322111  1000000    


Q ss_pred             cccccccccCCc-hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          783 DHILDFNVSRTS-LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       783 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                            ....+. ......+.++.+++.+||+.||++||+++++.+.|+++
T Consensus       232 ------~~~~~~~~~~~~~p~~~~~li~~cl~~~p~~RP~~~~i~~~l~~~  276 (299)
T d1ckia_         232 ------KMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNL  276 (299)
T ss_dssp             ------HHHSCHHHHTTTSCHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHH
T ss_pred             ------cCCCChhHhccCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHH
Confidence                  000000 00112345788999999999999999999998887753

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=1.1e-43  Score=372.66  Aligned_cols=256  Identities=10%  Similarity=0.087  Sum_probs=202.2

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCC-CCcccceEEEecCCceEE
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSN-SNVMTPLAYVLASDSAYL  632 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H-~niv~~~~~~~~~~~~~l  632 (833)
                      +.|+..+.||+|+||+||+|+. .+|+.||||++...      ...+.+.+|++++++++| +||+.+++++..+...++
T Consensus         5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~------~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~   78 (293)
T d1csna_           5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRR------SDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVL   78 (293)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECC------TTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEE
T ss_pred             CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccc------cCcHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEE
Confidence            4577889999999999999996 47999999988422      123468889999999976 899999999999999999


Q ss_pred             EEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCC-----CCCceeccceee
Q 003296          633 FYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKS-----LKEPQIGDIELC  707 (833)
Q Consensus       633 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~-----~~~~ki~dfgl~  707 (833)
                      ||||+ +|+|.++++.. ...+++.++..++.|++.||+|||   +.+||||||||+|||++.     ++.+|++|||+|
T Consensus        79 vme~~-~~~l~~~~~~~-~~~~~~~~~~~i~~q~~~~l~~lH---~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a  153 (293)
T d1csna_          79 VIDLL-GPSLEDLLDLC-GRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMV  153 (293)
T ss_dssp             EEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTC
T ss_pred             EEEec-CCCHHHHHHhh-ccchhhHHHHHHHHHHHHHHHHHH---HCCceeccCCccceeecCcccccCCceEEccccee
Confidence            99999 68999998753 346899999999999999999999   889999999999999974     567999999999


Q ss_pred             eeeCCCCCC-----CccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCcc--HHHHHHHhhccc-
Q 003296          708 KVIDPSKST-----GSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNE--LAKWVLRNSAQQ-  779 (833)
Q Consensus       708 ~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~--~~~~~~~~~~~~-  779 (833)
                      +........     ......+||+.|||||++.+..++.++|||||||++|||+||+.||.+...  ............ 
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~  233 (293)
T d1csna_         154 KFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQ  233 (293)
T ss_dssp             EESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHH
T ss_pred             EEcccCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhccC
Confidence            987533211     122356899999999999999999999999999999999999999974332  111111110000 


Q ss_pred             -ccccccccccccCCchhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Q 003296          780 -DKLDHILDFNVSRTSLAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRMLLNA  832 (833)
Q Consensus       780 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~L~~~  832 (833)
                       ....+     +      ....+.++.+++..|++.+|++||+++.+.+.|+++
T Consensus       234 ~~~~~~-----l------~~~~p~~l~~ii~~~~~~~~~~rP~y~~l~~~l~~~  276 (293)
T d1csna_         234 STPLRE-----L------CAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKV  276 (293)
T ss_dssp             HSCHHH-----H------TTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHH
T ss_pred             CCChHH-----h------cCCCCHHHHHHHHHHhcCCcccCcCHHHHHHHHHHH
Confidence             00000     0      011235688899999999999999999888877653

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-44  Score=387.39  Aligned_cols=261  Identities=16%  Similarity=0.173  Sum_probs=196.3

Q ss_pred             HhcCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcccceEEEecC-----C
Q 003296          555 AVANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVMTPLAYVLAS-----D  628 (833)
Q Consensus       555 ~~~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~~~~~~~-----~  628 (833)
                      +.|+..+.||+|+||+||+|+. .+|+.||||+++...  ......+++.+|+++|++++|||||++++++...     .
T Consensus        18 ~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~--~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~   95 (348)
T d2gfsa1          18 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF--QSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF   95 (348)
T ss_dssp             TTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTT--SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTC
T ss_pred             CCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchh--cChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccC
Confidence            3578889999999999999996 589999999995321  1222346789999999999999999999999743     3


Q ss_pred             ceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccceeee
Q 003296          629 SAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDIELCK  708 (833)
Q Consensus       629 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~  708 (833)
                      ..++||||+.+|+|.++++.   ..+++.++..++.|++.||+|||   +.+|+||||||+|||++.++.+|++|||++.
T Consensus        96 ~~~~i~~~~~gg~L~~~~~~---~~l~e~~~~~i~~qil~aL~~LH---~~giiHrDiKp~NILi~~~~~~kl~dfg~a~  169 (348)
T d2gfsa1          96 NDVYLVTHLMGADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR  169 (348)
T ss_dssp             CCCEEEEECCSEEHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCC----
T ss_pred             ceEEEEEeecCCchhhhccc---ccccHHHHHHHHHHHHHHHHHHH---hCCCcccccCCccccccccccccccccchhc
Confidence            45677788889999999974   35999999999999999999999   7899999999999999999999999999987


Q ss_pred             eeCCCCCCCccccccccccccccccccCCc-ccccCcchhhHHHHHHHHhCCCcccCCccHHHHHHHhhccccccccccc
Q 003296          709 VIDPSKSTGSLSTVAGSVGYIPPEYAYTMR-VTMAGNVYSFGVILLELLTGKTAVNQGNELAKWVLRNSAQQDKLDHILD  787 (833)
Q Consensus       709 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (833)
                      ....     ...+..||+.|+|||+..+.. ++.++||||+||++|||++|+.||.+...................+...
T Consensus       170 ~~~~-----~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~  244 (348)
T d2gfsa1         170 HTDD-----EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLK  244 (348)
T ss_dssp             CCTG-----GGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHT
T ss_pred             ccCc-----ccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhh
Confidence            5432     224578999999999877654 6899999999999999999999998655433222111111000000000


Q ss_pred             --------------ccccCCc--hhHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 003296          788 --------------FNVSRTS--LAVRSQMLTVLKVAVACVSVSPEARPKMKSVLRM  828 (833)
Q Consensus       788 --------------~~~~~~~--~~~~~~~~~~~~l~~~cl~~dP~~Rps~~evl~~  828 (833)
                                    .......  ........++.+++.+||+.||++|||++|+++|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~H  301 (348)
T d2gfsa1         245 KISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH  301 (348)
T ss_dssp             TCCCHHHHHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hccchhhhhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhcC
Confidence                          0000000  0001234568899999999999999999999975

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.2e-38  Score=343.04  Aligned_cols=260  Identities=13%  Similarity=0.145  Sum_probs=189.5

Q ss_pred             cCCccccccCcccEEEEEEc-CCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-----------CCCcccceEEE
Q 003296          557 ANPLNVELKTRFSTYYKAVM-PSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-----------NSNVMTPLAYV  624 (833)
Q Consensus       557 ~~~~~~ig~g~~g~vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-----------H~niv~~~~~~  624 (833)
                      |+..+.||+|+||+||+|+. .+|+.||||+++.. .    ...+.+.+|++++++++           |||||++++++
T Consensus        15 Y~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~-~----~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~   89 (362)
T d1q8ya_          15 YILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-K----VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHF   89 (362)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-H----HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEE
T ss_pred             EEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEecc-c----cchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEe
Confidence            77889999999999999997 58999999999522 2    12356888999998875           47899999988


Q ss_pred             ec--CCceEEEEeeCCCCChhh-hhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCC---
Q 003296          625 LA--SDSAYLFYEYAPKGTLFD-VLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKE---  698 (833)
Q Consensus       625 ~~--~~~~~lv~ey~~~g~L~~-~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~---  698 (833)
                      ..  ....++||+++..+.... .........+++..+..++.|+++||+|||+  ..+|+||||||+|||++.++.   
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~--~~~IvHrDlKp~NIll~~~~~~~~  167 (362)
T d1q8ya_          90 NHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHR--RCGIIHTDIKPENVLMEIVDSPEN  167 (362)
T ss_dssp             EEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHH--TTCEECSCCSGGGEEEEEEETTTT
T ss_pred             eeccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhh--hcCcccccCChhHeeeeccCcccc
Confidence            65  356777888776654333 3333334578999999999999999999994  368999999999999986553   


Q ss_pred             ---ceeccceeeeeeCCCCCCCccccccccccccccccccCCcccccCcchhhHHHHHHHHhCCCcccCCccH-------
Q 003296          699 ---PQIGDIELCKVIDPSKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKTAVNQGNEL-------  768 (833)
Q Consensus       699 ---~ki~dfgl~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~-------  768 (833)
                         +|++|||.++......     ...+||+.|+|||++.+..|+.++||||+||+++||++|+.||......       
T Consensus       168 ~~~~kl~dfg~s~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~  242 (362)
T d1q8ya_         168 LIQIKIADLGNACWYDEHY-----TNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDD  242 (362)
T ss_dssp             EEEEEECCCTTCEETTBCC-----CSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHH
T ss_pred             cceeeEeeccccccccccc-----ccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhH
Confidence               8999999998654222     4568999999999999999999999999999999999999999733210       


Q ss_pred             --HHHHHHhhcc-------cc----------ccccccccccc-------CCchhHHHHHHHHHHHHHhccCCCCCCCCCH
Q 003296          769 --AKWVLRNSAQ-------QD----------KLDHILDFNVS-------RTSLAVRSQMLTVLKVAVACVSVSPEARPKM  822 (833)
Q Consensus       769 --~~~~~~~~~~-------~~----------~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~cl~~dP~~Rps~  822 (833)
                        ...+......       ..          ....+......       ...........++.+++.+|++.||++|||+
T Consensus       243 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta  322 (362)
T d1q8ya_         243 HIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADA  322 (362)
T ss_dssp             HHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCH
T ss_pred             HHHHHHHHhCCCCHHHhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCH
Confidence              0111000000       00          00000000000       0001123456789999999999999999999


Q ss_pred             HHHHHH
Q 003296          823 KSVLRM  828 (833)
Q Consensus       823 ~evl~~  828 (833)
                      +|+++|
T Consensus       323 ~e~L~H  328 (362)
T d1q8ya_         323 GGLVNH  328 (362)
T ss_dssp             HHHHTC
T ss_pred             HHHhcC
Confidence            999986

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=1e-28  Score=269.89  Aligned_cols=357  Identities=26%  Similarity=0.334  Sum_probs=244.7

Q ss_pred             ECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCccc
Q 003296           14 NFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGE   93 (833)
Q Consensus        14 ~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~   93 (833)
                      +++.+.+++......+.+|++|++++|.|+.+  ..+..+++|++|+|++|+|+++.|  |+++++|++|+|++|.+.+.
T Consensus        28 ~l~~~~~~~~~~~~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i  103 (384)
T d2omza2          28 VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI  103 (384)
T ss_dssp             HTTCSSTTSEECHHHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             HhCCCCCCCccCHHHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCcc--ccCCcccccccccccccccc
Confidence            35556666543335566788888888877754  246677888888888888876543  77788888888888887754


Q ss_pred             CCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhc
Q 003296           94 IPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRF  173 (833)
Q Consensus        94 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~  173 (833)
                      .  .++.+++|+.|++++|.+++..+  ......+..+....|.+....+..................+..   ......
T Consensus       104 ~--~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  176 (384)
T d2omza2         104 T--PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP---LANLTT  176 (384)
T ss_dssp             G--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGG---GTTCTT
T ss_pred             c--ccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccchhhh---hccccc
Confidence            3  37778888888888887775433  3455667777777776654433332222221111111111110   001122


Q ss_pred             CCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCC
Q 003296          174 LRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNN  253 (833)
Q Consensus       174 L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N  253 (833)
                      ........|...  ....+..+++++.+++++|.+++..|....++++.|++++|.+.. ++  .+..+++|+.|++++|
T Consensus       177 ~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n  251 (384)
T d2omza2         177 LERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-IG--TLASLTNLTDLDLANN  251 (384)
T ss_dssp             CCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSS
T ss_pred             cccccccccccc--cccccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCC-cc--hhhcccccchhccccC
Confidence            333444444432  234566778888999999888877666666788888888887653 32  5677888999999999


Q ss_pred             CCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCcc
Q 003296          254 SFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPS  333 (833)
Q Consensus       254 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~  333 (833)
                      .+++..+  ++.+++|+.|++++|.+.+..+  +..+..++.++++.|.+++.  ..+..+++++.|++++|++++..+ 
T Consensus       252 ~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~-  324 (384)
T d2omza2         252 QISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP-  324 (384)
T ss_dssp             CCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG-
T ss_pred             ccCCCCc--ccccccCCEeeccCcccCCCCc--cccccccccccccccccccc--cccchhcccCeEECCCCCCCCCcc-
Confidence            8887643  7788889999999888876543  67788888888888888753  347778888889999988886543 


Q ss_pred             ccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCccCCCCcccccceeeccccccccchhhhhccCCCCCE
Q 003296          334 FLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEV  413 (833)
Q Consensus       334 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~  413 (833)
                       +..+++|+.|++++|++++ ++ .+.++++|++|++++|++++.                      .|  +.++++|+.
T Consensus       325 -l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l----------------------~~--l~~l~~L~~  377 (384)
T d2omza2         325 -VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDL----------------------TP--LANLTRITQ  377 (384)
T ss_dssp             -GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBC----------------------GG--GTTCTTCSE
T ss_pred             -cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCC----------------------hh--hccCCCCCE
Confidence             7788889999999988875 33 588888888888888887642                      22  677889999


Q ss_pred             EecccCc
Q 003296          414 LDLSNNR  420 (833)
Q Consensus       414 L~Ls~N~  420 (833)
                      |++++|.
T Consensus       378 L~L~~Na  384 (384)
T d2omza2         378 LGLNDQA  384 (384)
T ss_dssp             EECCCEE
T ss_pred             eeCCCCc
Confidence            9999873

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=7.1e-29  Score=271.16  Aligned_cols=342  Identities=25%  Similarity=0.301  Sum_probs=250.9

Q ss_pred             CCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296            6 GIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL   85 (833)
Q Consensus         6 ~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   85 (833)
                      .+.+|++|+++++.|+.++.+..+++|++|||++|+|+.+.+  |+++++|++|++++|+|+++.  .++.+++|+.|++
T Consensus        42 ~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~  117 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTL  117 (384)
T ss_dssp             HHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEEC
T ss_pred             HhCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCcc--ccCCccccccccccccccccc--ccccccccccccc
Confidence            467899999999999999888999999999999999998764  999999999999999999754  3889999999999


Q ss_pred             cCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCcccccccccccc
Q 003296           86 SGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGS  165 (833)
Q Consensus        86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~  165 (833)
                      ++|.+++..+  ......+..+....|.+....+..................+     ..+.............|.....
T Consensus       118 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  190 (384)
T d2omza2         118 FNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL-----KPLANLTTLERLDISSNKVSDI  190 (384)
T ss_dssp             CSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCC-----GGGTTCTTCCEEECCSSCCCCC
T ss_pred             cccccccccc--ccccccccccccccccccccccccccccccccccccccchh-----hhhccccccccccccccccccc
Confidence            9999986543  44566788888888887654443333333332222222211     1222233333333333333222


Q ss_pred             CChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCC
Q 003296          166 VPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKL  245 (833)
Q Consensus       166 ~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L  245 (833)
                      ........++.+++++|.+++..|  +...++|+.|++++|.++........++++.|++++|.+.+ ++  .+..+++|
T Consensus       191 ~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~--~~~~~~~L  265 (384)
T d2omza2         191 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN-LA--PLSGLTKL  265 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-CG--GGTTCTTC
T ss_pred             cccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCC-CC--cccccccC
Confidence            222223456777777777766544  34456777777777777643211223677777777777654 33  37788999


Q ss_pred             CEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCC
Q 003296          246 TYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWN  325 (833)
Q Consensus       246 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  325 (833)
                      +.|++++|++++..  .+..++.++.++++.|.+.+.  ..+..+++++.|++++|++++..+  +..+++|++|++++|
T Consensus       266 ~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n  339 (384)
T d2omza2         266 TELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANN  339 (384)
T ss_dssp             SEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSS
T ss_pred             CEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCC
Confidence            99999999998664  377889999999999998753  357888899999999999987643  788999999999999


Q ss_pred             cCcccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCC
Q 003296          326 SLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGN  373 (833)
Q Consensus       326 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  373 (833)
                      ++++ ++ .+.++++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       340 ~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         340 KVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            9985 34 58899999999999999997665  889999999999987

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=6.9e-30  Score=270.89  Aligned_cols=250  Identities=30%  Similarity=0.434  Sum_probs=155.6

Q ss_pred             CCCCEEECCCCCCCCc--ccccccCCCCCCEEeCcC-CcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 003296           30 AGLEVLDFSSNNLNGN--INLQFDELVSLKSLNLSK-NKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTL  106 (833)
Q Consensus        30 ~~L~~L~Ls~N~l~~~--~~~~f~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  106 (833)
                      .+++.|||++|++++.  +|..+++|++|++|+|++ |+++|.+|..|+++++|++|+|++|++.+..+..+..+.+|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            3577788888877763  566777888888888875 7777777777888888888888888887777777777778888


Q ss_pred             EeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccc
Q 003296          107 IDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLG  186 (833)
Q Consensus       107 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~  186 (833)
                      +++++|.+.+.+|..|+++++|+++++++|.+++.+|..+..+..+                     ++.+++++|++++
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l---------------------~~~l~~~~n~l~~  188 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL---------------------FTSMTISRNRLTG  188 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTT---------------------CCEEECCSSEEEE
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccccccccccc---------------------ccccccccccccc
Confidence            8888887777777778888888888888887777777777666554                     2344555555555


Q ss_pred             cCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCC
Q 003296          187 VIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSC  266 (833)
Q Consensus       187 ~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l  266 (833)
                      ..|..+..+.. ..++++.+...+.+|.                       .+..+++|+.+++++|.+.+.+| .++.+
T Consensus       189 ~~~~~~~~l~~-~~l~l~~~~~~~~~~~-----------------------~~~~~~~l~~l~~~~~~l~~~~~-~~~~~  243 (313)
T d1ogqa_         189 KIPPTFANLNL-AFVDLSRNMLEGDASV-----------------------LFGSDKNTQKIHLAKNSLAFDLG-KVGLS  243 (313)
T ss_dssp             ECCGGGGGCCC-SEEECCSSEEEECCGG-----------------------GCCTTSCCSEEECCSSEECCBGG-GCCCC
T ss_pred             ccccccccccc-cccccccccccccccc-----------------------ccccccccccccccccccccccc-ccccc
Confidence            55544444332 2455555554443322                       22334444444444444443332 34444


Q ss_pred             CCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCc
Q 003296          267 RSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNS  326 (833)
Q Consensus       267 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~  326 (833)
                      ++|+.|+|++|+++|.+|..++.+++|+.|+|++|+|+|.+|. +..+++|+.+++++|+
T Consensus       244 ~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             cccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            4555555555555545555555555555555555555554543 3455566666666665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=1.8e-29  Score=267.67  Aligned_cols=248  Identities=29%  Similarity=0.434  Sum_probs=127.5

Q ss_pred             CCCEEeCcCCcCCCC--CCcccCCCCCCCEEEccC-CcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEE
Q 003296           55 SLKSLNLSKNKFNGF--LPINLGKTKALEELVLSG-NAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVL  131 (833)
Q Consensus        55 ~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  131 (833)
                      +++.|+|++|.+++.  +|..++++++|++|+|++ |.++|.+|.+|+++++|++|+|++|+|.+..+..+..+.+|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            456666666666552  455566666666666654 55555555556666666666666666555555555555555555


Q ss_pred             ECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCccCCCCCCC-CEEecccccCcc
Q 003296          132 ILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNL-QTIDLSVNMLEG  210 (833)
Q Consensus       132 ~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L-~~L~Ls~N~l~~  210 (833)
                      ++++|.+.+.+|..+.+++.                      |+.+++++|.+.+.+|..+..+..+ +.++++.|++  
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~----------------------L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l--  186 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPN----------------------LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL--  186 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTT----------------------CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE--
T ss_pred             ccccccccccCchhhccCcc----------------------cceeeccccccccccccccccccccccccccccccc--
Confidence            55555555555544444333                      2333333333333333333333332 4444444444  


Q ss_pred             cCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCC
Q 003296          211 SLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSL  290 (833)
Q Consensus       211 ~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  290 (833)
                                                                   ++..|..+..+..+ .++++++...+.+|..+..+
T Consensus       187 ---------------------------------------------~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~  220 (313)
T d1ogqa_         187 ---------------------------------------------TGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSD  220 (313)
T ss_dssp             ---------------------------------------------EEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTT
T ss_pred             ---------------------------------------------cccccccccccccc-cccccccccccccccccccc
Confidence                                                         44444444333222 34444444444444444444


Q ss_pred             CCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEc
Q 003296          291 GILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQL  370 (833)
Q Consensus       291 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  370 (833)
                      +.++.+++++|.+.+.+| .+..+++|+.|+|++|+++|.+|..|+.+++|++|+|++|+|+|.+|. ++++++|+.+++
T Consensus       221 ~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l  298 (313)
T d1ogqa_         221 KNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAY  298 (313)
T ss_dssp             SCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGT
T ss_pred             cccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHh
Confidence            444444444444444332 344455555555555555555555555555555555655555555553 345555555666


Q ss_pred             cCCc
Q 003296          371 GGNQ  374 (833)
Q Consensus       371 ~~N~  374 (833)
                      ++|+
T Consensus       299 ~~N~  302 (313)
T d1ogqa_         299 ANNK  302 (313)
T ss_dssp             CSSS
T ss_pred             CCCc
Confidence            6665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=7.9e-27  Score=246.18  Aligned_cols=283  Identities=22%  Similarity=0.286  Sum_probs=189.9

Q ss_pred             CCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCC
Q 003296            9 GLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGN   88 (833)
Q Consensus         9 ~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N   88 (833)
                      ..+.+|++++.|+++|. .-.+++++|||++|+|+.+.+.+|.++++|++|++++|.++.+.|..|..+++|++|+|++|
T Consensus        11 ~~~~~~C~~~~L~~lP~-~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             ETTEEECTTSCCCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             cCCEEEecCCCCCccCC-CCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            57889999999999986 23478999999999999999889999999999999999999999999999999999999999


Q ss_pred             cCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCC--CCCcccccCCccCccccccccccccC
Q 003296           89 AFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDG--RLPTSLASITTLSRFAANQNKFSGSV  166 (833)
Q Consensus        89 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~l~l~~n~l~~~~  166 (833)
                      +++.+ |..+  ...|+.|++++|.+.++.+..+.....++.++...|....  ..+..|..+++|+.+++.+|.++. +
T Consensus        90 ~l~~l-~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l  165 (305)
T d1xkua_          90 QLKEL-PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-I  165 (305)
T ss_dssp             CCSBC-CSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-C
T ss_pred             ccCcC-ccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-c
Confidence            99954 4433  3578999999999998888888899999999998886542  334455555555555555554432 2


Q ss_pred             ChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCC
Q 003296          167 PGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLT  246 (833)
Q Consensus       167 p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~  246 (833)
                      |....                        ++|+.|++++|...+.                       ++..|..++.++
T Consensus       166 ~~~~~------------------------~~L~~L~l~~n~~~~~-----------------------~~~~~~~~~~l~  198 (305)
T d1xkua_         166 PQGLP------------------------PSLTELHLDGNKITKV-----------------------DAASLKGLNNLA  198 (305)
T ss_dssp             CSSCC------------------------TTCSEEECTTSCCCEE-----------------------CTGGGTTCTTCC
T ss_pred             CcccC------------------------CccCEEECCCCcCCCC-----------------------ChhHhhcccccc
Confidence            32233                        4455555555544322                       122344445555


Q ss_pred             EEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhh------cCCCcCcee
Q 003296          247 YLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQF------SQLKLLSTM  320 (833)
Q Consensus       247 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~------~~l~~L~~L  320 (833)
                      +|++++|.+++..+..|.++++|++|+|++|.|+ .+|..+..+++|+.|+|++|+|+......|      ..+.+|+.|
T Consensus       199 ~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L  277 (305)
T d1xkua_         199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV  277 (305)
T ss_dssp             EEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEE
T ss_pred             ccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEE
Confidence            5555555555555555555555555555555554 334455555555555555555554332222      345667777


Q ss_pred             eccCCcCc--ccCccccccCCCCCEE
Q 003296          321 NISWNSLS--GSIPSFLSNLTNLVNL  344 (833)
Q Consensus       321 ~Ls~N~l~--~~~~~~~~~l~~L~~L  344 (833)
                      +|++|.++  ...|.+|.-+.....+
T Consensus       278 ~L~~N~~~~~~~~~~~f~~~~~~~~~  303 (305)
T d1xkua_         278 SLFSNPVQYWEIQPSTFRCVYVRAAV  303 (305)
T ss_dssp             ECCSSSSCGGGSCGGGGTTCCCGGGE
T ss_pred             ECCCCcCccCcCCHhHhcccccCccc
Confidence            77777764  3445555554444333

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=1.6e-25  Score=236.06  Aligned_cols=268  Identities=23%  Similarity=0.290  Sum_probs=161.1

Q ss_pred             CCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccC
Q 003296           32 LEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSA  111 (833)
Q Consensus        32 L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  111 (833)
                      ++.+|=++++++.+++ .+.  +++++|+|++|+|+.+.+.+|.++++|++|++++|.+..+.|..|.++++|+.|++++
T Consensus        12 ~~~~~C~~~~L~~lP~-~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPK-DLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSCCCSCCC-SCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCCccCC-CCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            4445555555554432 221  3455555555555554444555555555555555555544455555555555555555


Q ss_pred             CcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCcc
Q 003296          112 NNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPID  191 (833)
Q Consensus       112 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~  191 (833)
                      |+|+.+ |..+  ...|+.|++++|.                                              +.+..+..
T Consensus        89 n~l~~l-~~~~--~~~l~~L~~~~n~----------------------------------------------l~~l~~~~  119 (305)
T d1xkua_          89 NQLKEL-PEKM--PKTLQELRVHENE----------------------------------------------ITKVRKSV  119 (305)
T ss_dssp             SCCSBC-CSSC--CTTCCEEECCSSC----------------------------------------------CCBBCHHH
T ss_pred             CccCcC-ccch--hhhhhhhhccccc----------------------------------------------hhhhhhhh
Confidence            555432 2111  2234444444444                                              43333333


Q ss_pred             CCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcE
Q 003296          192 LLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTL  271 (833)
Q Consensus       192 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  271 (833)
                      +.....+..++...|.....                     ......|..+++|+.+++++|.++.. |..  .+++|+.
T Consensus       120 ~~~~~~~~~l~~~~n~~~~~---------------------~~~~~~~~~l~~L~~l~l~~n~l~~l-~~~--~~~~L~~  175 (305)
T d1xkua_         120 FNGLNQMIVVELGTNPLKSS---------------------GIENGAFQGMKKLSYIRIADTNITTI-PQG--LPPSLTE  175 (305)
T ss_dssp             HTTCTTCCEEECCSSCCCGG---------------------GBCTTGGGGCTTCCEEECCSSCCCSC-CSS--CCTTCSE
T ss_pred             hhcccccccccccccccccc---------------------CCCccccccccccCccccccCCcccc-Ccc--cCCccCE
Confidence            44445555555555543211                     11223456677777777777777643 322  2567777


Q ss_pred             EEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCCcc
Q 003296          272 LNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQNNL  351 (833)
Q Consensus       272 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  351 (833)
                      |++++|.+.+..+..|..++.++.|++++|.+++..+..|.++++|++|+|++|+|+ .+|..|..+++|++|+|++|+|
T Consensus       176 L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i  254 (305)
T d1xkua_         176 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI  254 (305)
T ss_dssp             EECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred             EECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCcc
Confidence            788877777777777777777888888888888777777888888888888888887 4566788888888888888888


Q ss_pred             ccccCccc------cCCCCCCEEEccCCcCC
Q 003296          352 NGSIPNSI------TNMRSLIELQLGGNQLS  376 (833)
Q Consensus       352 ~~~~p~~~------~~l~~L~~L~L~~N~l~  376 (833)
                      +.+...+|      ..+.+|+.|+|++|++.
T Consensus       255 ~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         255 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            76544444      35677888888888774

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.4e-26  Score=238.50  Aligned_cols=226  Identities=20%  Similarity=0.186  Sum_probs=163.1

Q ss_pred             CCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEcc-CC
Q 003296           10 LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLS-GN   88 (833)
Q Consensus        10 L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~-~N   88 (833)
                      -..+++++++++++|. .-.+++++|+|++|+|+.+.+.+|.++++|++|++++|+|..+.+..+..+..++.++.. .|
T Consensus        13 ~~~v~c~~~~L~~iP~-~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          13 KVTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             SCEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             CeEEEcCCCCCCccCC-CCCCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            3567999999999986 234679999999999999998999999999999999999999999999999999998764 66


Q ss_pred             cCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCCh
Q 003296           89 AFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPG  168 (833)
Q Consensus        89 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~  168 (833)
                      .++...+..|.++++|+.|++++|.+....+..+..+.+|+.+++++|+|+++.+..|..+++                 
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~-----------------  154 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN-----------------  154 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-----------------
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccc-----------------
Confidence            777777888999999999999999988777888888888999999998888665555544433                 


Q ss_pred             hhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEE
Q 003296          169 GITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYL  248 (833)
Q Consensus       169 ~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L  248 (833)
                           |+.|++++|++.++.+..|..+++|+.+++++|++++.                       ++..|..+++|++|
T Consensus       155 -----L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i-----------------------~~~~f~~l~~L~~L  206 (284)
T d1ozna_         155 -----LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV-----------------------HPHAFRDLGRLMTL  206 (284)
T ss_dssp             -----CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-----------------------CTTTTTTCTTCCEE
T ss_pred             -----hhhcccccCcccccchhhhccccccchhhhhhcccccc-----------------------ChhHhhhhhhcccc
Confidence                 44455555555544455555555555555555555432                       22234455555555


Q ss_pred             ECCCCCCCCCCCccccCCCCCcEEEccCCccCC
Q 003296          249 ELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNG  281 (833)
Q Consensus       249 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  281 (833)
                      ++++|++.+..+..|+.+++|++|+|++|++..
T Consensus       207 ~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             ECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cccccccccccccccccccccCEEEecCCCCCC
Confidence            555555555555555555555555555555543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.8e-25  Score=229.61  Aligned_cols=214  Identities=25%  Similarity=0.283  Sum_probs=192.8

Q ss_pred             cCChhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCC--cCCcEEEcCCccccCCCCccccCCC
Q 003296          165 SVPGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMS--PNLVRLRLGTNLLIGEIPSATFTSL  242 (833)
Q Consensus       165 ~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~l~~n~l~~~~~~~~f~~l  242 (833)
                      .+|..+...+++|+|++|+|+++.+..|..+++|++|++++|.+....+..+.  ..+..+....+..+..+++..|.++
T Consensus        25 ~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l  104 (284)
T d1ozna_          25 AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL  104 (284)
T ss_dssp             SCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred             ccCCCCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhccc
Confidence            44555556689999999999988888899999999999999999877666554  5778887776665667888899999


Q ss_pred             CCCCEEECCCCCCCCCCCccccCCCCCcEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeec
Q 003296          243 EKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNI  322 (833)
Q Consensus       243 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  322 (833)
                      ++|++|++++|.+....+..+..+.+|+.+++++|++++..+..|..+++|+.|++++|++++..+..|.++++|+++++
T Consensus       105 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l  184 (284)
T d1ozna_         105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (284)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhh
Confidence            99999999999999888888999999999999999999888888999999999999999999999999999999999999


Q ss_pred             cCCcCcccCccccccCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCCcc
Q 003296          323 SWNSLSGSIPSFLSNLTNLVNLNLRQNNLNGSIPNSITNMRSLIELQLGGNQLSGT  378 (833)
Q Consensus       323 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  378 (833)
                      ++|++++..|..|.++++|++|++++|++.+..+..|.++++|++|++++|++.+.
T Consensus       185 ~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             hhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            99999999999999999999999999999998899999999999999999998754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.2e-24  Score=217.71  Aligned_cols=201  Identities=23%  Similarity=0.228  Sum_probs=169.9

Q ss_pred             CCCCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEE
Q 003296            4 CGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEEL   83 (833)
Q Consensus         4 ~~~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L   83 (833)
                      |.+..++.+++++++.|+.||. .-.++|++|||++|+|+++.+.+|.++++|++|+|++|+|+.+.  .++.+++|++|
T Consensus         6 ~~~~~~~~~v~C~~~~L~~iP~-~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L   82 (266)
T d1p9ag_           6 VSKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTL   82 (266)
T ss_dssp             EECSTTCCEEECTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEE
T ss_pred             EcccCCCeEEEccCCCCCeeCc-CcCcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--ccccccccccc
Confidence            5677888899999999999985 11368999999999999999999999999999999999999654  46789999999


Q ss_pred             EccCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCcccccccccc
Q 003296           84 VLSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFS  163 (833)
Q Consensus        84 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~  163 (833)
                      +|++|+++. .+..+.++++|+.|++++|.+.+..+..+..+.++++|++++|.++...+..+..++.++.+++++|+++
T Consensus        83 ~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             ECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence            999999984 5778999999999999999999999999999999999999999999888888888888888888888777


Q ss_pred             ccCChhh--hhcCCEEecccccccccCCccCCCCCCCCEEecccccCc
Q 003296          164 GSVPGGI--TRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLE  209 (833)
Q Consensus       164 ~~~p~~~--~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~  209 (833)
                      +..+..+  +..|++|+|++|+|+ .+|.++..+++|+.|+|++|.+.
T Consensus       162 ~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            6555444  455777777777776 45666667777777777777653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.7e-22  Score=204.38  Aligned_cols=114  Identities=24%  Similarity=0.152  Sum_probs=69.5

Q ss_pred             cCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 003296           27 NGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTL  106 (833)
Q Consensus        27 ~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  106 (833)
                      ....++...|.++++|+.+ |..+.  ++|++|+|++|+|+++.+..|.++++|++|+|++|+|+.+.  .++.+++|++
T Consensus         7 ~~~~~~~~v~C~~~~L~~i-P~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~   81 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGT   81 (266)
T ss_dssp             ECSTTCCEEECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCE
T ss_pred             cccCCCeEEEccCCCCCee-CcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--cccccccccc
Confidence            3444555567777777654 32232  45677777777777666666777777777777777766432  3456666777


Q ss_pred             EeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCccc
Q 003296          107 IDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSL  146 (833)
Q Consensus       107 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  146 (833)
                      |+|++|+++. .+..+.++++|++|++++|.+.+..+..+
T Consensus        82 L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  120 (266)
T d1p9ag_          82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGAL  120 (266)
T ss_dssp             EECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTT
T ss_pred             cccccccccc-cccccccccccccccccccccceeecccc
Confidence            7777776663 34556666666666666666654443333

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.88  E-value=1.2e-23  Score=204.67  Aligned_cols=164  Identities=13%  Similarity=0.044  Sum_probs=119.1

Q ss_pred             CccccccCcccEEEEEEcCCCceEEEEEccccchhhh--------------ccChhHHHHHHHHHhcCCCCCcccceEEE
Q 003296          559 PLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQ--------------LGSHHKFDKELEVLGKLSNSNVMTPLAYV  624 (833)
Q Consensus       559 ~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~--------------~~~~~~~~~E~~~l~~l~H~niv~~~~~~  624 (833)
                      ..+.||+|+||+||+|+..+|+.||||+++.......              ......+.+|.+.+.++.|++++..+++.
T Consensus         4 vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~~   83 (191)
T d1zara2           4 IGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWE   83 (191)
T ss_dssp             EEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEE
T ss_pred             hCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEec
Confidence            3578999999999999998999999998742111000              01123456789999999999999887653


Q ss_pred             ecCCceEEEEeeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCeeecCCCccceeeCCCCCceeccc
Q 003296          625 LASDSAYLFYEYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFTSNPILLLDLSTRNIFLKSLKEPQIGDI  704 (833)
Q Consensus       625 ~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~~~~iiHrdlk~~Nill~~~~~~ki~df  704 (833)
                          ..++||||++++.+.+         +++.....++.|+++|++|||   ..+|+||||||+|||++++ .++++||
T Consensus        84 ----~~~lvme~~~~~~~~~---------l~~~~~~~i~~ql~~~l~~lH---~~giiHrDiKP~NILv~~~-~~~liDF  146 (191)
T d1zara2          84 ----GNAVLMELIDAKELYR---------VRVENPDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVSEE-GIWIIDF  146 (191)
T ss_dssp             ----TTEEEEECCCCEEGGG---------CCCSCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEETT-EEEECCC
T ss_pred             ----CCEEEEEeeccccccc---------hhhHHHHHHHHHHHHHHHHHh---hCCEEEccCChhheeeeCC-CEEEEEC
Confidence                2489999999865543         233345678999999999999   7899999999999999865 4899999


Q ss_pred             eeeeeeCCCCCCCccccccccccccc------cccccCCcccccCcchhhHH
Q 003296          705 ELCKVIDPSKSTGSLSTVAGSVGYIP------PEYAYTMRVTMAGNVYSFGV  750 (833)
Q Consensus       705 gl~~~~~~~~~~~~~~~~~gt~~y~a------PE~~~~~~~~~~~Dv~S~Gv  750 (833)
                      |.|+.......          ..|..      .|. ...+|+.++|+||..-
T Consensus       147 G~a~~~~~~~~----------~~~l~rd~~~~~~~-f~r~y~~~~d~~s~~~  187 (191)
T d1zara2         147 PQSVEVGEEGW----------REILERDVRNIITY-FSRTYRTEKDINSAID  187 (191)
T ss_dssp             TTCEETTSTTH----------HHHHHHHHHHHHHH-HHHHHCCCCCHHHHHH
T ss_pred             CCcccCCCCCc----------HHHHHHHHHHHHHH-HcCCCCCcccHHHHHH
Confidence            99976532211          01111      111 2457899999999653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.85  E-value=6e-19  Score=188.90  Aligned_cols=180  Identities=26%  Similarity=0.256  Sum_probs=123.0

Q ss_pred             CCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccC
Q 003296            8 DGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSG   87 (833)
Q Consensus         8 ~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~   87 (833)
                      .+++.|||++|.|+++|.  .+++|++|+|++|+|+.+ |..   +.+|+.|++++|+++.+ +..   .+.|++|+|++
T Consensus        38 ~~l~~LdLs~~~L~~lp~--~~~~L~~L~Ls~N~l~~l-p~~---~~~L~~L~l~~n~l~~l-~~l---p~~L~~L~L~~  107 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE--LPPHLESLVASCNSLTEL-PEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSN  107 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS--CCTTCSEEECCSSCCSSC-CCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCS
T ss_pred             cCCCEEEeCCCCCCCCCC--CCCCCCEEECCCCCCccc-ccc---hhhhhhhhhhhcccchh-hhh---ccccccccccc
Confidence            368899999999999985  467899999999999855 433   46889999999998854 321   24689999999


Q ss_pred             CcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCC
Q 003296           88 NAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVP  167 (833)
Q Consensus        88 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p  167 (833)
                      |.++. +| .++.+++|+.|++++|.+....+    ....+..+.+..+...  .+..+..++.++.+.+..|.+.....
T Consensus       108 n~l~~-lp-~~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~~~  179 (353)
T d1jl5a_         108 NQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKLPD  179 (353)
T ss_dssp             SCCSS-CC-CCTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSCCC
T ss_pred             ccccc-cc-chhhhccceeecccccccccccc----ccccccchhhcccccc--ccccccccccceeccccccccccccc
Confidence            99884 44 36788999999999998874332    3456777877766554  34556667777777777776653221


Q ss_pred             hhhhhcCCEEecccccccccCCccCCCCCCCCEEecccccCc
Q 003296          168 GGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLE  209 (833)
Q Consensus       168 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~  209 (833)
                        .....+.+..+++.+.. ++ .+..++.|+.+++++|...
T Consensus       180 --~~~~~~~l~~~~~~~~~-~~-~~~~l~~L~~l~l~~n~~~  217 (353)
T d1jl5a_         180 --LPLSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLK  217 (353)
T ss_dssp             --CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred             --ccccccccccccccccc-cc-ccccccccccccccccccc
Confidence              11224455555554432 22 3455677777777777654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.83  E-value=4.4e-18  Score=182.02  Aligned_cols=314  Identities=24%  Similarity=0.242  Sum_probs=169.6

Q ss_pred             CCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEec
Q 003296           30 AGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDL  109 (833)
Q Consensus        30 ~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  109 (833)
                      .++++|||++|.++.++ +   ..++|++|+|++|+|+. +|..   ..+|++|++++|.++.+ +..   .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~~lp-~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~l---p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLP-E---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCSCCC-S---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCCCCC-C---CCCCCCEEECCCCCCcc-cccc---hhhhhhhhhhhcccchh-hhh---ccccccccc
Confidence            36889999999998654 3   35789999999999985 4654   45789999999998743 321   146999999


Q ss_pred             cCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCC
Q 003296          110 SANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIP  189 (833)
Q Consensus       110 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~  189 (833)
                      ++|.+..+ |. ++.+++|++|++++|.++... ...   ..                      +..+.+.++...  ..
T Consensus       106 ~~n~l~~l-p~-~~~l~~L~~L~l~~~~~~~~~-~~~---~~----------------------l~~l~~~~~~~~--~~  155 (353)
T d1jl5a_         106 SNNQLEKL-PE-LQNSSFLKIIDVDNNSLKKLP-DLP---PS----------------------LEFIAAGNNQLE--EL  155 (353)
T ss_dssp             CSSCCSSC-CC-CTTCTTCCEEECCSSCCSCCC-CCC---TT----------------------CCEEECCSSCCS--SC
T ss_pred             cccccccc-cc-hhhhccceeeccccccccccc-ccc---cc----------------------ccchhhcccccc--cc
Confidence            99999854 43 678999999999999887432 222   22                      333333333322  12


Q ss_pred             ccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCC
Q 003296          190 IDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSL  269 (833)
Q Consensus       190 ~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  269 (833)
                      ..+..++.++.+++++|.+.....  .......+....+.+. .++  .+..++.|+.+++++|..... +   ....++
T Consensus       156 ~~l~~l~~l~~L~l~~n~~~~~~~--~~~~~~~l~~~~~~~~-~~~--~~~~l~~L~~l~l~~n~~~~~-~---~~~~~l  226 (353)
T d1jl5a_         156 PELQNLPFLTAIYADNNSLKKLPD--LPLSLESIVAGNNILE-ELP--ELQNLPFLTTIYADNNLLKTL-P---DLPPSL  226 (353)
T ss_dssp             CCCTTCTTCCEEECCSSCCSSCCC--CCTTCCEEECCSSCCS-SCC--CCTTCTTCCEEECCSSCCSSC-C---SCCTTC
T ss_pred             ccccccccceeccccccccccccc--cccccccccccccccc-ccc--ccccccccccccccccccccc-c---cccccc
Confidence            234445556666666665542211  1122333444333321 122  244566777777777665532 2   224456


Q ss_pred             cEEEccCCccCCCChhhhCCCCCCcEEEccCCcCCCcCchhhcCCCcCceeeccCCcCcccCccccccCCCCCEEEccCC
Q 003296          270 TLLNLAQNELNGSLPIQLGSLGILQVMNLQLNKLSGEIPSQFSQLKLLSTMNISWNSLSGSIPSFLSNLTNLVNLNLRQN  349 (833)
Q Consensus       270 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  349 (833)
                      ..+.+.+|.+... +   .....+...++..+.+.+...    -.......++..|.+.+.    ...+++|++|+|++|
T Consensus       227 ~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~l~~----l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N  294 (353)
T d1jl5a_         227 EALNVRDNYLTDL-P---ELPQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNN  294 (353)
T ss_dssp             CEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSS
T ss_pred             ccccccccccccc-c---ccccccccccccccccccccc----ccchhcccccccCccccc----cccCCCCCEEECCCC
Confidence            6666666665432 1   112344445554444432110    011223344444444322    122345556666666


Q ss_pred             ccccccCccccCCCCCCEEEccCCcCCccCCCCcccccceeeccccccccchhhhhccCCCCCEEec
Q 003296          350 NLNGSIPNSITNMRSLIELQLGGNQLSGTIPMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDL  416 (833)
Q Consensus       350 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  416 (833)
                      +|+ .+|..   +++|+.|+|++|+|+ .+|..+.. .+.|++++|.++ .+|...   .+|+.|.+
T Consensus       295 ~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~~~~-L~~L~L~~N~L~-~lp~~~---~~L~~L~~  351 (353)
T d1jl5a_         295 KLI-ELPAL---PPRLERLIASFNHLA-EVPELPQN-LKQLHVEYNPLR-EFPDIP---ESVEDLRM  351 (353)
T ss_dssp             CCS-CCCCC---CTTCCEEECCSSCCS-CCCCCCTT-CCEEECCSSCCS-SCCCCC---TTCCEEEC
T ss_pred             ccC-ccccc---cCCCCEEECCCCcCC-ccccccCC-CCEEECcCCcCC-CCCccc---cccCeeEC
Confidence            555 33322   345555666666555 33433322 234566666655 234321   24555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.82  E-value=1.6e-20  Score=182.38  Aligned_cols=132  Identities=21%  Similarity=0.266  Sum_probs=122.1

Q ss_pred             CCEEECCCCCCCCcccccCCCCCCEEECCCCCCCC-cccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCC
Q 003296           10 LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNG-NINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGN   88 (833)
Q Consensus        10 L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~-~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N   88 (833)
                      .+++++++|+|++||. .-.+++++|+|++|+|+. +.+..|.++++|+.|+|++|+++.+.+..|..+++|++|+|++|
T Consensus        10 ~~~v~Cs~~~L~~iP~-~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TTEEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CCEEEEeCCCcCccCC-CCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            5789999999999986 224789999999999986 66788999999999999999999999999999999999999999


Q ss_pred             cCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCC
Q 003296           89 AFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRL  142 (833)
Q Consensus        89 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  142 (833)
                      +|+.+.|.+|.++++|++|+|++|+|+++.+++|..+++|++|+|++|.+....
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc
Confidence            999999999999999999999999999999999999999999999999987543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=9e-20  Score=184.50  Aligned_cols=220  Identities=15%  Similarity=0.142  Sum_probs=146.7

Q ss_pred             CCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCC-CCCcccCCCCCCCEEEccC-
Q 003296           10 LKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNG-FLPINLGKTKALEELVLSG-   87 (833)
Q Consensus        10 L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~-   87 (833)
                      .+.++++++.++.+|. .-.++++.|||++|+|+.+.+.+|.++++|++|+|++|.+.. +.+..|.+++++++|++.. 
T Consensus        10 ~~~i~c~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SSEEEEESCSCSSCCS-CSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CCEEEEeCCCCCCcCC-CCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            3789999999999985 223578999999999998888889999999999999998875 3456788888888888764 


Q ss_pred             CcCcccCCccccCCCCCCEEeccCCcCCccCCc-cccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccC
Q 003296           88 NAFHGEIPKGIADYRNLTLIDLSANNLSGSVPD-RIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSV  166 (833)
Q Consensus        88 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~  166 (833)
                      |.+....+..|.++++|+.|++++|.+....+. .+..+..+..+..+++.+....+..|..+.                
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~----------------  152 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS----------------  152 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSB----------------
T ss_pred             ccccccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccc----------------
Confidence            677777777888888888888888887644332 233445555555555555544333333221                


Q ss_pred             ChhhhhcCCEEecccccccccCCccCCCCCCCCEE-ecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCC
Q 003296          167 PGGITRFLRNLDLSYNKLLGVIPIDLLSHPNLQTI-DLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKL  245 (833)
Q Consensus       167 p~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L-~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L  245 (833)
                           ..++.|++++|+++.+.+. ....++++.+ ++++|+++                       .+++..|.++++|
T Consensus       153 -----~~l~~L~l~~n~l~~i~~~-~~~~~~l~~~~~l~~n~l~-----------------------~l~~~~f~~l~~L  203 (242)
T d1xwdc1         153 -----FESVILWLNKNGIQEIHNC-AFNGTQLDELNLSDNNNLE-----------------------ELPNDVFHGASGP  203 (242)
T ss_dssp             -----SSCEEEECCSSCCCEECTT-TTTTCCEEEEECTTCTTCC-----------------------CCCTTTTTTSCCC
T ss_pred             -----ccceeeecccccccccccc-cccchhhhccccccccccc-----------------------cccHHHhcCCCCC
Confidence                 1244555555555543332 2233333333 33444433                       3556667778888


Q ss_pred             CEEECCCCCCCCCCCccccCCCCCcEEEcc
Q 003296          246 TYLELDNNSFTGMIPQQLGSCRSLTLLNLA  275 (833)
Q Consensus       246 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  275 (833)
                      ++|+|++|+|+...+..|.++++|+.+++.
T Consensus       204 ~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         204 VILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             SEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             CEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            888888888886666667777777666554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=2.1e-18  Score=172.32  Aligned_cols=202  Identities=22%  Similarity=0.328  Sum_probs=95.3

Q ss_pred             EECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccCCcC
Q 003296           35 LDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNL  114 (833)
Q Consensus        35 L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  114 (833)
                      ++++.++++...  .++++.+|+.|++++|.|+.+ + .+..+++|++|+|++|.+++..|  +..+++|+.+++++|.+
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL   97 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc-h-hHhcCCCCcEeecCCceeecccc--ccccccccccccccccc
Confidence            344444444322  334445555555555555533 1 24455555555555555543322  55555555555555555


Q ss_pred             CccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCEEecccccccccCCccCCC
Q 003296          115 SGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVIPIDLLS  194 (833)
Q Consensus       115 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~~  194 (833)
                      +.+  ..|.++++|+.+++++|...+..+  +.....                      ++.+.++.+.+....  .+..
T Consensus        98 ~~i--~~l~~l~~L~~l~l~~~~~~~~~~--~~~~~~----------------------~~~l~~~~~~~~~~~--~~~~  149 (227)
T d1h6ua2          98 KNV--SAIAGLQSIKTLDLTSTQITDVTP--LAGLSN----------------------LQVLYLDLNQITNIS--PLAG  149 (227)
T ss_dssp             SCC--GGGTTCTTCCEEECTTSCCCCCGG--GTTCTT----------------------CCEEECCSSCCCCCG--GGGG
T ss_pred             ccc--ccccccccccccccccccccccch--hccccc----------------------hhhhhchhhhhchhh--hhcc
Confidence            422  235555555555555555443211  111122                      333333333333221  2334


Q ss_pred             CCCCCEEecccccCcccCCCCCCcCCcEEEcCCccccCCCCccccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEc
Q 003296          195 HPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLGTNLLIGEIPSATFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNL  274 (833)
Q Consensus       195 ~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~~n~l~~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  274 (833)
                      +++|+.|++++|.+.+.                         ..|.++++|+.|+|++|++++..  .++++++|++|+|
T Consensus       150 ~~~L~~L~l~~n~~~~~-------------------------~~l~~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~L  202 (227)
T d1h6ua2         150 LTNLQYLSIGNAQVSDL-------------------------TPLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHL  202 (227)
T ss_dssp             CTTCCEEECCSSCCCCC-------------------------GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEEC
T ss_pred             ccccccccccccccccc-------------------------hhhcccccceecccCCCccCCCh--hhcCCCCCCEEEC
Confidence            45555555555544311                         12344555566666665555432  2555566666666


Q ss_pred             cCCccCCCChhhhCCCCCCcEEEcc
Q 003296          275 AQNELNGSLPIQLGSLGILQVMNLQ  299 (833)
Q Consensus       275 ~~N~l~~~~p~~~~~l~~L~~L~L~  299 (833)
                      ++|++++..|  +.++++|+.|+++
T Consensus       203 s~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         203 KNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             TTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             cCCcCCCCcc--cccCCCCCEEEee
Confidence            6665553322  5555666666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=5.4e-19  Score=171.50  Aligned_cols=172  Identities=18%  Similarity=0.194  Sum_probs=145.3

Q ss_pred             CCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCC-CCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecc
Q 003296           32 LEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNG-FLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLS  110 (833)
Q Consensus        32 L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  110 (833)
                      .+++|.++|+++.++.+-+   +++++|+|++|+|++ +.+..|.++++|++|+|++|.+....+..|..+++|++|+|+
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            5689999999997755432   689999999999986 557788999999999999999999999999999999999999


Q ss_pred             CCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChh-hhhcCCEEecccccccccCC
Q 003296          111 ANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGG-ITRFLRNLDLSYNKLLGVIP  189 (833)
Q Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~-~~~~L~~L~Ls~N~l~~~~~  189 (833)
                      +|+|+++.|.+|.++++|++|+|++|+|+++.|..|..+++|+.+++++|.+....... +...++.+.+..|.+....|
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCC
Confidence            99999999999999999999999999999999999999999999999999987644332 34456667777777776555


Q ss_pred             ccCCCCCCCCEEecccccCc
Q 003296          190 IDLLSHPNLQTIDLSVNMLE  209 (833)
Q Consensus       190 ~~~~~~~~L~~L~Ls~N~l~  209 (833)
                      ..   +..++.++|+.|.+.
T Consensus       167 ~~---l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         167 SK---VRDVQIKDLPHSEFK  183 (192)
T ss_dssp             TT---TTTSBGGGSCTTTCC
T ss_pred             hh---hcCCEeeecCHhhCc
Confidence            43   345566677777664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=3.8e-18  Score=170.45  Aligned_cols=201  Identities=24%  Similarity=0.326  Sum_probs=93.7

Q ss_pred             ECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCccc
Q 003296           14 NFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGE   93 (833)
Q Consensus        14 ~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~   93 (833)
                      +++.++++.+..+..+.+|+.|++++|+|+.+.  .|..+++|++|++++|+|+++.|  +..+++|++|++++|.++.+
T Consensus        25 ~l~~~~~~d~~~~~~l~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i  100 (227)
T d1h6ua2          25 AAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV  100 (227)
T ss_dssp             HTTCSSTTSEECHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC
T ss_pred             HhCCCCcCCcCCHHHcCCcCEEECCCCCCCcch--hHhcCCCCcEeecCCceeecccc--cccccccccccccccccccc
Confidence            344444444333344444555555555554331  24445555555555555543322  44455555555555544421


Q ss_pred             CCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhc
Q 003296           94 IPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRF  173 (833)
Q Consensus        94 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~  173 (833)
                        ..+.++++|+.+++++|...+.  ..+...+.++.+.++.+.+...  ..+...++|+.|++++|.+++..+-.-++.
T Consensus       101 --~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~  174 (227)
T d1h6ua2         101 --SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTPLANLSK  174 (227)
T ss_dssp             --GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCGGGTTCTT
T ss_pred             --cccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccchhhccccc
Confidence              2344455555555555544322  2234444455555555444322  123444445555555554443222222344


Q ss_pred             CCEEecccccccccCCccCCCCCCCCEEecccccCcccCCCCCCcCCcEEEcC
Q 003296          174 LRNLDLSYNKLLGVIPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPNLVRLRLG  226 (833)
Q Consensus       174 L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~l~  226 (833)
                      |+.|+|++|++.++.  .+..+++|++|+|++|++++..|-.-.++|+.|+++
T Consensus       175 L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         175 LTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             CCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEE
T ss_pred             ceecccCCCccCCCh--hhcCCCCCCEEECcCCcCCCCcccccCCCCCEEEee
Confidence            566666666555432  245556666666666666544332223556665553

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.1e-18  Score=174.32  Aligned_cols=105  Identities=16%  Similarity=0.127  Sum_probs=78.9

Q ss_pred             CEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCccc-CCccccCCCCCCEEeccC
Q 003296           33 EVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGE-IPKGIADYRNLTLIDLSA  111 (833)
Q Consensus        33 ~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~Ls~  111 (833)
                      +.++.++++++.+++..+   +++++|+|++|+|+.+.+..|.++++|++|+|++|.+... .+.+|.++++++.|++..
T Consensus        11 ~~i~c~~~~l~~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCCcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            577778877875544333   4678888888888877777788888888888888887653 455678888888887654


Q ss_pred             -CcCCccCCccccCCCCCcEEECcCCcCCC
Q 003296          112 -NNLSGSVPDRIGELSKLEVLILSANNLDG  140 (833)
Q Consensus       112 -N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  140 (833)
                       |.+....+..|.++++|++|++++|.++.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCS
T ss_pred             cccccccccccccccccccccccchhhhcc
Confidence             66777777778888888888888887764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.5e-20  Score=209.19  Aligned_cols=346  Identities=21%  Similarity=0.177  Sum_probs=170.7

Q ss_pred             CCCEEECCCCCCCCc---ccccCCCCCCEEECCCCCCCCc----ccccccCCCCCCEEeCcCCcCCCC----CCcccC-C
Q 003296            9 GLKLLNFSKNELVSL---PTFNGFAGLEVLDFSSNNLNGN----INLQFDELVSLKSLNLSKNKFNGF----LPINLG-K   76 (833)
Q Consensus         9 ~L~~L~ls~N~l~~i---~~f~~l~~L~~L~Ls~N~l~~~----~~~~f~~l~~L~~L~Ls~N~l~~~----~p~~~~-~   76 (833)
                      +|+.||+++|+++..   ..+..++++++|+|++|.|+..    +...+..+++|++|||++|+|+..    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            467788888888763   2255567777888888877621    233456777788888888877521    112222 2


Q ss_pred             CCCCCEEEccCCcCccc----CCccccCCCCCCEEeccCCcCCccCCcccc-----CCCCCcEEECcCCcCCCCCC----
Q 003296           77 TKALEELVLSGNAFHGE----IPKGIADYRNLTLIDLSANNLSGSVPDRIG-----ELSKLEVLILSANNLDGRLP----  143 (833)
Q Consensus        77 l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~~p----  143 (833)
                      ..+|++|+|++|.++..    ++..+..+++|++|+|++|.|+......+.     .......+......+....-    
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            34677777777777532    344566677777777777766532111111     11122223322222211000    


Q ss_pred             cccccCCccCccccccccccccCChhhhhcCCEEecccccccccC----CccC-CCCCCCCEEecccccCcccCCC----
Q 003296          144 TSLASITTLSRFAANQNKFSGSVPGGITRFLRNLDLSYNKLLGVI----PIDL-LSHPNLQTIDLSVNMLEGSLPQ----  214 (833)
Q Consensus       144 ~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~L~Ls~N~l~~~~----~~~~-~~~~~L~~L~Ls~N~l~~~~p~----  214 (833)
                      ..+....                      .++.++++++......    ...+ ........+++..+.+...-..    
T Consensus       163 ~~l~~~~----------------------~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~  220 (460)
T d1z7xw1         163 SVLRAKP----------------------DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG  220 (460)
T ss_dssp             HHHHHCT----------------------TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred             ccccccc----------------------ccccccccccccccccccccccccccccccccccccccccccchhhhcccc
Confidence            0011111                      2445555544432110    0000 1112344555555543211000    


Q ss_pred             --CCCcCCcEEEcCCccccCC----CCccccCCCCCCCEEECCCCCCCCCC----CccccCCCCCcEEEccCCccCCCCh
Q 003296          215 --NMSPNLVRLRLGTNLLIGE----IPSATFTSLEKLTYLELDNNSFTGMI----PQQLGSCRSLTLLNLAQNELNGSLP  284 (833)
Q Consensus       215 --~~~~~L~~L~l~~n~l~~~----~~~~~f~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~p  284 (833)
                        ...+.++.+.+..|.....    .....+.....++.+++++|.+....    ...+...+.++.+++++|.+.....
T Consensus       221 ~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~  300 (460)
T d1z7xw1         221 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA  300 (460)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred             cccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence              0013445555555442110    11123344567777777777765331    1234456677777777777642211


Q ss_pred             hh-----hCCCCCCcEEEccCCcCCCcCchh----hcCCCcCceeeccCCcCccc----Cccccc-cCCCCCEEEccCCc
Q 003296          285 IQ-----LGSLGILQVMNLQLNKLSGEIPSQ----FSQLKLLSTMNISWNSLSGS----IPSFLS-NLTNLVNLNLRQNN  350 (833)
Q Consensus       285 ~~-----~~~l~~L~~L~L~~N~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~----~~~~~~-~l~~L~~L~L~~N~  350 (833)
                      ..     ......|+.+++++|.++......    +...++|++|+|++|.++..    ++..+. ..+.|++|+|++|+
T Consensus       301 ~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~  380 (460)
T d1z7xw1         301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD  380 (460)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             chhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCC
Confidence            11     122345667777777665443222    23345666667766666532    122221 34456666666666


Q ss_pred             cccc----cCccccCCCCCCEEEccCCcCC
Q 003296          351 LNGS----IPNSITNMRSLIELQLGGNQLS  376 (833)
Q Consensus       351 l~~~----~p~~~~~l~~L~~L~L~~N~l~  376 (833)
                      |+..    ++..+..+++|++|+|++|+|+
T Consensus       381 i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         381 VSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             CCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             CChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            6532    3334455566666666666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.6e-20  Score=208.98  Aligned_cols=383  Identities=20%  Similarity=0.179  Sum_probs=212.7

Q ss_pred             CCCEEECCCCCCCCcc-cccccCCCCCCEEeCcCCcCCC----CCCcccCCCCCCCEEEccCCcCccc----CCcccc-C
Q 003296           31 GLEVLDFSSNNLNGNI-NLQFDELVSLKSLNLSKNKFNG----FLPINLGKTKALEELVLSGNAFHGE----IPKGIA-D  100 (833)
Q Consensus        31 ~L~~L~Ls~N~l~~~~-~~~f~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~-~  100 (833)
                      +|+.||+++|+|+... ...+..+++|++|+|++|.|+.    .++..+..+++|++|||++|.|+..    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            6889999999998643 3346778999999999999873    2244567889999999999988632    222332 2


Q ss_pred             CCCCCEEeccCCcCCcc----CCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcCCE
Q 003296          101 YRNLTLIDLSANNLSGS----VPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFLRN  176 (833)
Q Consensus       101 l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L~~  176 (833)
                      ..+|+.|+|++|+++..    ++..+..+++|++|+|++|.++......+...  +.....               ....
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~--l~~~~~---------------~~~~  145 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG--LLDPQC---------------RLEK  145 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH--HTSTTC---------------CCCE
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhc--cccccc---------------cccc
Confidence            35799999999998743    45667888999999999998764221111100  000000               0111


Q ss_pred             Eeccccccccc----CCccCCCCCCCCEEecccccCcccCC-------CCCCcCCcEEEcCCccccCCC---CccccCCC
Q 003296          177 LDLSYNKLLGV----IPIDLLSHPNLQTIDLSVNMLEGSLP-------QNMSPNLVRLRLGTNLLIGEI---PSATFTSL  242 (833)
Q Consensus       177 L~Ls~N~l~~~----~~~~~~~~~~L~~L~Ls~N~l~~~~p-------~~~~~~L~~L~l~~n~l~~~~---~~~~f~~l  242 (833)
                      .......+...    ....+.....++.++++.+......-       .........+.+..+.....-   ....+...
T Consensus       146 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~  225 (460)
T d1z7xw1         146 LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK  225 (460)
T ss_dssp             EECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHC
T ss_pred             ccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhccccccccc
Confidence            22222111100    00112335678889998877642100       001123445565555432100   00122345


Q ss_pred             CCCCEEECCCCCCCCC-----CCccccCCCCCcEEEccCCccCCCC----hhhhCCCCCCcEEEccCCcCCCcCchhh--
Q 003296          243 EKLTYLELDNNSFTGM-----IPQQLGSCRSLTLLNLAQNELNGSL----PIQLGSLGILQVMNLQLNKLSGEIPSQF--  311 (833)
Q Consensus       243 ~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~~p~~~--  311 (833)
                      ..++.+++++|.+...     .+........++.+++++|.+....    ...+...+.++.+++++|.++......+  
T Consensus       226 ~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~  305 (460)
T d1z7xw1         226 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE  305 (460)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             ccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhc
Confidence            6677777777765321     2223344566777777777664321    1223445666666666666653222211  


Q ss_pred             ---cCCCcCceeeccCCcCcccCcc----ccccCCCCCEEEccCCccccc----cCcccc-CCCCCCEEEccCCcCCccC
Q 003296          312 ---SQLKLLSTMNISWNSLSGSIPS----FLSNLTNLVNLNLRQNNLNGS----IPNSIT-NMRSLIELQLGGNQLSGTI  379 (833)
Q Consensus       312 ---~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~----~p~~~~-~l~~L~~L~L~~N~l~~~~  379 (833)
                         .....|+.+++++|.++.....    .+...++|++|+|++|+++..    ++..+. ..+.|++|+|++|.|+..-
T Consensus       306 ~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~  385 (460)
T d1z7xw1         306 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS  385 (460)
T ss_dssp             HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred             cccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHH
Confidence               1234566666666665543222    223345566666666665431    122222 3445666666666554210


Q ss_pred             CCCcccccceeeccccccccchhhhhccCCCCCEEecccCcCccccchh----cc-CCCCCCeeeCcCCccccc
Q 003296          380 PMMPPRLQIALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQL----LA-QMPTLTQLLLTNNQLSGV  448 (833)
Q Consensus       380 p~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~-~l~~L~~L~ls~N~l~~~  448 (833)
                                        -..++..+..+++|++|||++|+|+......    +. ....|+.|++++|.+...
T Consensus       386 ------------------~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         386 ------------------CSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             ------------------HHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             ------------------HHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence                              0124456667788999999999887543222    22 334688899988887643

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=1.1e-17  Score=163.02  Aligned_cols=175  Identities=22%  Similarity=0.311  Sum_probs=100.0

Q ss_pred             ECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCccc
Q 003296           14 NFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGE   93 (833)
Q Consensus        14 ~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~   93 (833)
                      .++.+.++.+.....+.+++.|++++|+|+.+.  .+..+++|++|+|++|+|+++.|  ++++++|++|++++|.+...
T Consensus        24 ~l~~~~~~~~~~~~~l~~l~~L~l~~~~i~~l~--~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~   99 (199)
T d2omxa2          24 VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI   99 (199)
T ss_dssp             HTTCSSTTSEECHHHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             HhCCCCCCCccCHHHhcCCCEEECCCCCCCCcc--ccccCCCcCcCccccccccCccc--ccCCcccccccccccccccc
Confidence            455666666544455666777777777776542  35667777777777777765433  66777777777777766533


Q ss_pred             CCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhc
Q 003296           94 IPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRF  173 (833)
Q Consensus        94 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~  173 (833)
                       + .+.++++|+.|++++|.+...  ..+..+++|+.|++++|.+...  ..+..+++|+.|++.+|++++..+-.-++.
T Consensus       100 -~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~  173 (199)
T d2omxa2         100 -T-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKPLANLTT  173 (199)
T ss_dssp             -G-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCGGGTTCTT
T ss_pred             -c-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCCccccCCCC
Confidence             2 366777777777777766543  2366677777777777766532  234555554444444444433211111233


Q ss_pred             CCEEecccccccccCCccCCCCCCCCE
Q 003296          174 LRNLDLSYNKLLGVIPIDLLSHPNLQT  200 (833)
Q Consensus       174 L~~L~Ls~N~l~~~~~~~~~~~~~L~~  200 (833)
                      |++|++++|+++.+ + .+..+++|+.
T Consensus       174 L~~L~ls~N~i~~i-~-~l~~L~~L~~  198 (199)
T d2omxa2         174 LERLDISSNKVSDI-S-VLAKLTNLES  198 (199)
T ss_dssp             CCEEECCSSCCCCC-G-GGGGCTTCSE
T ss_pred             CCEEECCCCCCCCC-c-cccCCCCCCc
Confidence            45555555554432 1 2344444444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=1.3e-17  Score=164.04  Aligned_cols=178  Identities=24%  Similarity=0.303  Sum_probs=89.5

Q ss_pred             CCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccC
Q 003296           15 FSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEI   94 (833)
Q Consensus        15 ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~   94 (833)
                      ++++.++.+.....+.+|+.|++++|.|+.+.  .+..+++|++|+|++|+|+++.  .++.+++|++|++++|+|+.+ 
T Consensus        31 l~~~~~~~~~~~~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l-  105 (210)
T d1h6ta2          31 LKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL-  105 (210)
T ss_dssp             TTCSCTTSEECHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG-
T ss_pred             hCcCccCCccCHHHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccccc-
Confidence            44444444322233445555555555555433  2445555555555555555432  244555555555555555532 


Q ss_pred             CccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCccccccccccccCChhhhhcC
Q 003296           95 PKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGSVPGGITRFL  174 (833)
Q Consensus        95 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~~L  174 (833)
                      | .+.++++|+.|++++|.+...  ..+..+++|+.+++++|.+++  +..+..+++|+.+++++|++++..+-..++.|
T Consensus       106 ~-~l~~l~~L~~L~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L  180 (210)
T d1h6ta2         106 S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKL  180 (210)
T ss_dssp             G-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGGGTTCTTC
T ss_pred             c-ccccccccccccccccccccc--ccccccccccccccccccccc--cccccccccccccccccccccccccccCCCCC
Confidence            2 355555555555555555421  235555555555555555543  22334444444444444444432221223346


Q ss_pred             CEEecccccccccCCccCCCCCCCCEEecc
Q 003296          175 RNLDLSYNKLLGVIPIDLLSHPNLQTIDLS  204 (833)
Q Consensus       175 ~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls  204 (833)
                      +.|+|++|+++.+ | .+..+++|++|+|+
T Consensus       181 ~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         181 QNLYLSKNHISDL-R-ALAGLKNLDVLELF  208 (210)
T ss_dssp             CEEECCSSCCCBC-G-GGTTCTTCSEEEEE
T ss_pred             CEEECCCCCCCCC-h-hhcCCCCCCEEEcc
Confidence            6666666666543 2 35666667776665

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=1.7e-17  Score=163.13  Aligned_cols=165  Identities=21%  Similarity=0.292  Sum_probs=142.7

Q ss_pred             CCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296            6 GIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL   85 (833)
Q Consensus         6 ~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   85 (833)
                      .+.+|+.|++++|.++.++.+..+++|++|+|++|+|+++.+  ++.+++|++|++++|+|+++ | .+..+++|+.|++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEEC
T ss_pred             HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccc--cccCcccccccccccccccc-c-ccccccccccccc
Confidence            367899999999999999888999999999999999998664  78999999999999999964 3 5889999999999


Q ss_pred             cCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCcccccccccccc
Q 003296           86 SGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGS  165 (833)
Q Consensus        86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~  165 (833)
                      ++|.+..  ...+..+++|+.+++++|.++.  +..+..+++|+++++++|++++..  .+.++++|+.|++++|+++. 
T Consensus       120 ~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-  192 (210)
T d1h6ta2         120 EHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD-  192 (210)
T ss_dssp             TTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-
T ss_pred             ccccccc--cccccccccccccccccccccc--cccccccccccccccccccccccc--cccCCCCCCEEECCCCCCCC-
Confidence            9999874  3468899999999999999975  346788999999999999998754  38899999999999999985 


Q ss_pred             CCh-hhhhcCCEEeccc
Q 003296          166 VPG-GITRFLRNLDLSY  181 (833)
Q Consensus       166 ~p~-~~~~~L~~L~Ls~  181 (833)
                      +|. .-++.|++|+|++
T Consensus       193 l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 LRALAGLKNLDVLELFS  209 (210)
T ss_dssp             CGGGTTCTTCSEEEEEE
T ss_pred             ChhhcCCCCCCEEEccC
Confidence            442 2256799999974

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=2.6e-17  Score=160.37  Aligned_cols=162  Identities=23%  Similarity=0.308  Sum_probs=137.9

Q ss_pred             CCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEc
Q 003296            6 GIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVL   85 (833)
Q Consensus         6 ~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   85 (833)
                      .+++++.|++++|.++.++.+..+++|++|+|++|+|+++.+  |.++++|++|++++|.+..+.  .+.+++.|++|++
T Consensus        38 ~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l  113 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTL  113 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEEC
T ss_pred             HhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc--ccCCccccccccccccccccc--ccccccccccccc
Confidence            368899999999999999888999999999999999998764  899999999999999998643  4889999999999


Q ss_pred             cCCcCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCcEEECcCCcCCCCCCcccccCCccCcccccccccccc
Q 003296           86 SGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVPDRIGELSKLEVLILSANNLDGRLPTSLASITTLSRFAANQNKFSGS  165 (833)
Q Consensus        86 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l~~n~l~~~  165 (833)
                      ++|.+...  ..+..+++|+.|++++|++...  +.+..+++|+.|++++|++++..  .+.++++|+.|++++|++++.
T Consensus       114 ~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~i  187 (199)
T d2omxa2         114 FNNQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSDI  187 (199)
T ss_dssp             CSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC
T ss_pred             cccccccc--cccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCCC
Confidence            99998754  4588999999999999999743  36899999999999999998753  488999999999999999863


Q ss_pred             CChhhhhcCCEE
Q 003296          166 VPGGITRFLRNL  177 (833)
Q Consensus       166 ~p~~~~~~L~~L  177 (833)
                      -+-.-++.|+.|
T Consensus       188 ~~l~~L~~L~~L  199 (199)
T d2omxa2         188 SVLAKLTNLESL  199 (199)
T ss_dssp             GGGGGCTTCSEE
T ss_pred             ccccCCCCCCcC
Confidence            222224445543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.9e-17  Score=152.72  Aligned_cols=137  Identities=13%  Similarity=0.102  Sum_probs=105.7

Q ss_pred             CCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCc
Q 003296           17 KNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPK   96 (833)
Q Consensus        17 ~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~   96 (833)
                      .|.+...|.|.++.+++.|||++|+|+.+ +..+..+++|++|||++|+|+.+  ..|..+++|++|+|++|+++...+.
T Consensus         5 ~~~i~~~~~~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~   81 (162)
T d1a9na_           5 AELIEQAAQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEG   81 (162)
T ss_dssp             HHHHHTSCEEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSC
T ss_pred             HHHHhhhHhccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcc
Confidence            34444457788888899999999999877 45678889999999999999865  3478889999999999999877777


Q ss_pred             cccCCCCCCEEeccCCcCCccCC-ccccCCCCCcEEECcCCcCCCCC---CcccccCCccCccc
Q 003296           97 GIADYRNLTLIDLSANNLSGSVP-DRIGELSKLEVLILSANNLDGRL---PTSLASITTLSRFA  156 (833)
Q Consensus        97 ~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~l~  156 (833)
                      .+..+++|+.|+|++|+|+.... ..+..+++|++|++++|.++...   +..++.+++|+.|+
T Consensus        82 ~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          82 LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            77888999999999999875433 46788899999999999886432   12355566666554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=6.6e-16  Score=137.04  Aligned_cols=118  Identities=20%  Similarity=0.306  Sum_probs=74.4

Q ss_pred             CEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcC
Q 003296           11 KLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAF   90 (833)
Q Consensus        11 ~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l   90 (833)
                      |+|+|++|+|+.++.+..+++|++||+++|+|+.+ |..|..+++|++|++++|.|+.+ | .|..+++|++|++++|+|
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~l-p~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcc-hhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCcc
Confidence            46777777777776677777777777777777654 34567777777777777777653 2 366677777777777776


Q ss_pred             cccCC-ccccCCCCCCEEeccCCcCCcc---CCccccCCCCCcEE
Q 003296           91 HGEIP-KGIADYRNLTLIDLSANNLSGS---VPDRIGELSKLEVL  131 (833)
Q Consensus        91 ~~~~p-~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L  131 (833)
                      +.... ..+..+++|+.|++++|.++..   ....+..+++|+.|
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            64432 4566666666666666666532   12223344555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.9e-16  Score=147.95  Aligned_cols=129  Identities=18%  Similarity=0.158  Sum_probs=111.6

Q ss_pred             CCCCCCCCCEEECCCCCCCCccc-ccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCC
Q 003296            3 SCGGIDGLKLLNFSKNELVSLPT-FNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALE   81 (833)
Q Consensus         3 ~~~~l~~L~~L~ls~N~l~~i~~-f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~   81 (833)
                      ++.+..+++.|+|++|+|+.|+. +..+++|++|||++|+|+.+  ..|..+++|++|+|++|+|+.+.+..+..+++|+
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            35677889999999999999975 57799999999999999976  3589999999999999999988887788899999


Q ss_pred             EEEccCCcCcccCC-ccccCCCCCCEEeccCCcCCccC---CccccCCCCCcEEEC
Q 003296           82 ELVLSGNAFHGEIP-KGIADYRNLTLIDLSANNLSGSV---PDRIGELSKLEVLIL  133 (833)
Q Consensus        82 ~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~L  133 (833)
                      +|+|++|+|+.... ..+..+++|++|++++|.++...   +..+..+++|++||-
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            99999999986433 56889999999999999997543   235788999999973

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=5.7e-15  Score=130.92  Aligned_cols=103  Identities=28%  Similarity=0.389  Sum_probs=88.3

Q ss_pred             CEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccCC
Q 003296           33 EVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSAN  112 (833)
Q Consensus        33 ~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  112 (833)
                      ++|||++|+|+.+.  .++++++|++|+|++|+|+. +|..|+.+++|++|++++|.|+.. | .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCCc--ccccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence            57999999998654  48899999999999999986 466789999999999999999854 3 5899999999999999


Q ss_pred             cCCccCC-ccccCCCCCcEEECcCCcCCC
Q 003296          113 NLSGSVP-DRIGELSKLEVLILSANNLDG  140 (833)
Q Consensus       113 ~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~  140 (833)
                      +|+...+ ..++.+++|++|++++|+++.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            9986543 578899999999999999874

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5.1e-14  Score=130.30  Aligned_cols=108  Identities=22%  Similarity=0.168  Sum_probs=85.0

Q ss_pred             CCCCCEEECCCCCCCCcc-cccCCCCCCEEECCCC-CCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEE
Q 003296            7 IDGLKLLNFSKNELVSLP-TFNGFAGLEVLDFSSN-NLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELV   84 (833)
Q Consensus         7 l~~L~~L~ls~N~l~~i~-~f~~l~~L~~L~Ls~N-~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~   84 (833)
                      ....+.++++++.+..+| .+.++++|+.|++++| .|+.+.+.+|.++++|+.|+|++|+|+.+.|.+|..+++|++|+
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             cCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            445667888888888875 4777888888888765 48888888888888888888888888888888888888888888


Q ss_pred             ccCCcCcccCCccccCCCCCCEEeccCCcCC
Q 003296           85 LSGNAFHGEIPKGIADYRNLTLIDLSANNLS  115 (833)
Q Consensus        85 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  115 (833)
                      |++|+|+.+.+..|..+ +|+.|+|++|.+.
T Consensus        87 Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             ccCCCCcccChhhhccc-cccccccCCCccc
Confidence            88888886655566554 5888888888774

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.7e-14  Score=146.98  Aligned_cols=61  Identities=16%  Similarity=0.180  Sum_probs=29.9

Q ss_pred             CCCCCCEEECCCC-CCCCCCCccccCCCCCcEEEccCC-ccCCCChhhhCCCCCCcEEEccCC
Q 003296          241 SLEKLTYLELDNN-SFTGMIPQQLGSCRSLTLLNLAQN-ELNGSLPIQLGSLGILQVMNLQLN  301 (833)
Q Consensus       241 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N  301 (833)
                      .+++|++|++++| .+++.....+..+++|++|+|+++ .++......++.+++|+.|+++++
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            3455666666554 344444445555556666666553 343333333444444444444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=9.2e-14  Score=142.89  Aligned_cols=186  Identities=19%  Similarity=0.255  Sum_probs=106.5

Q ss_pred             ccCCCCCCCEEECCCCCCCCCCCccccCCCCCcEEEccCC-ccCCC-ChhhhCCCCCCcEEEccCC-cCCCc-Cchhhc-
Q 003296          238 TFTSLEKLTYLELDNNSFTGMIPQQLGSCRSLTLLNLAQN-ELNGS-LPIQLGSLGILQVMNLQLN-KLSGE-IPSQFS-  312 (833)
Q Consensus       238 ~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~-  312 (833)
                      .+..+++|++|+|++|.+++..+..+..+++|+.|+++++ .++.. +.....++++|+.|+++++ .++.. ....+. 
T Consensus        66 l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~  145 (284)
T d2astb2          66 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH  145 (284)
T ss_dssp             HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred             HHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcc
Confidence            4566777777777777776666666777777777777774 34321 1222345677777777774 33321 112222 


Q ss_pred             CCCcCceeeccCC--cCccc-CccccccCCCCCEEEccCC-ccccccCccccCCCCCCEEEccCC-cCCccCCCCccccc
Q 003296          313 QLKLLSTMNISWN--SLSGS-IPSFLSNLTNLVNLNLRQN-NLNGSIPNSITNMRSLIELQLGGN-QLSGTIPMMPPRLQ  387 (833)
Q Consensus       313 ~l~~L~~L~Ls~N--~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~~~  387 (833)
                      ..++|+.|+++++  .++.. +...+..+++|+.|++++| .+++.....+..+++|++|+|++| .+++          
T Consensus       146 ~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~----------  215 (284)
T d2astb2         146 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP----------  215 (284)
T ss_dssp             SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG----------
T ss_pred             cccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCCh----------
Confidence            2356777777754  23321 2233455677777777775 356556666777777777777774 2321          


Q ss_pred             ceeeccccccccchhhhhccCCCCCEEecccCcCccccchhccCCCCCCeeeCcCCccccc
Q 003296          388 IALNLSSNLFEGPIPTTFARLNGLEVLDLSNNRFSGEIPQLLAQMPTLTQLLLTNNQLSGV  448 (833)
Q Consensus       388 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  448 (833)
                                  .....++.+++|+.|+++++--.+..+.....+|+|   .+..++++..
T Consensus       216 ------------~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L---~i~~~~ls~~  261 (284)
T d2astb2         216 ------------ETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL---QINCSHFTTI  261 (284)
T ss_dssp             ------------GGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTS---EESCCCSCCT
T ss_pred             ------------HHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCccc---cccCccCCCC
Confidence                        122345567778888887762222223323344444   3455666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.40  E-value=9e-15  Score=155.50  Aligned_cols=41  Identities=29%  Similarity=0.155  Sum_probs=23.6

Q ss_pred             ccCCCCCCEEeCcCCcCCCC----CCcccCCCCCCCEEEccCCcC
Q 003296           50 FDELVSLKSLNLSKNKFNGF----LPINLGKTKALEELVLSGNAF   90 (833)
Q Consensus        50 f~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l   90 (833)
                      +.....|+.|+|++|.|...    +...+...++|+.|+++++.+
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~   71 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT   71 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCT
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcc
Confidence            44566677777777766431    122345566666666666543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.1e-12  Score=121.20  Aligned_cols=111  Identities=18%  Similarity=0.156  Sum_probs=93.9

Q ss_pred             cCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCC-cCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCC
Q 003296           27 NGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKN-KFNGFLPINLGKTKALEELVLSGNAFHGEIPKGIADYRNLT  105 (833)
Q Consensus        27 ~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  105 (833)
                      ..+...+.++.+++++... +..|..+++|++|++++| .|+.+.+.+|.++++|+.|+|++|+|+.+.|.+|..+++|+
T Consensus         5 C~c~~~~~l~c~~~~~~~~-p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             SCCSSSSCEECCSSCCCTT-TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred             CCcCCCCeEEecCCCCccC-cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccc
Confidence            3445567799999888754 556888999999999766 58888888899999999999999999988899999999999


Q ss_pred             EEeccCCcCCccCCccccCCCCCcEEECcCCcCC
Q 003296          106 LIDLSANNLSGSVPDRIGELSKLEVLILSANNLD  139 (833)
Q Consensus       106 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  139 (833)
                      +|+|++|+|+.+.+..|..+ +|+.|+|++|.+.
T Consensus        84 ~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          84 RLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             EEECCSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             ceeccCCCCcccChhhhccc-cccccccCCCccc
Confidence            99999999997777777655 6999999999885

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.37  E-value=2.2e-15  Score=145.86  Aligned_cols=129  Identities=23%  Similarity=0.297  Sum_probs=93.9

Q ss_pred             CCCCEEECCCC--CCCCcc-cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEE
Q 003296            8 DGLKLLNFSKN--ELVSLP-TFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELV   84 (833)
Q Consensus         8 ~~L~~L~ls~N--~l~~i~-~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~   84 (833)
                      ..++.++++.+  .+..++ ++..+++|++|+|++|+|+.+.  .|.++++|++|+|++|.|+.+ |..+..+++|++|+
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~~i-~~~~~~~~~L~~L~   99 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELW   99 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEECSC-SSHHHHHHHCCEEE
T ss_pred             cccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc--cccCCccccChhhcccccccc-cccccccccccccc
Confidence            34556666654  455564 5777888888888888888653  477888888888888888753 44455566788888


Q ss_pred             ccCCcCcccCCccccCCCCCCEEeccCCcCCccCC-ccccCCCCCcEEECcCCcCCCC
Q 003296           85 LSGNAFHGEIPKGIADYRNLTLIDLSANNLSGSVP-DRIGELSKLEVLILSANNLDGR  141 (833)
Q Consensus        85 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~  141 (833)
                      +++|+|+.+  ..+..+++|+.|+|++|+|+.... ..|..+++|+.|+|++|.++..
T Consensus       100 l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         100 ISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             CSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             ccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence            888888754  347778888888888888875432 4578888888888888877643

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.33  E-value=2.2e-15  Score=145.86  Aligned_cols=126  Identities=20%  Similarity=0.215  Sum_probs=105.9

Q ss_pred             CCCCCCCCEEECCCCCCCCcccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEE
Q 003296            4 CGGIDGLKLLNFSKNELVSLPTFNGFAGLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEEL   83 (833)
Q Consensus         4 ~~~l~~L~~L~ls~N~l~~i~~f~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L   83 (833)
                      ++++++|+.|+|++|+|+.++.|.++++|+.|+|++|.|+.+. ..+..+++|++|++++|+|+.+  ..+..+++|++|
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~-~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L  120 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIASL--SGIEKLVNLRVL  120 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCS-SHHHHHHHCCEEECSEEECCCH--HHHHHHHHSSEE
T ss_pred             HhcccccceeECcccCCCCcccccCCccccChhhccccccccc-cccccccccccccccccccccc--cccccccccccc
Confidence            4568999999999999999988999999999999999998653 4555667899999999999965  347889999999


Q ss_pred             EccCCcCcccCC-ccccCCCCCCEEeccCCcCCccCCcc----------ccCCCCCcEEE
Q 003296           84 VLSGNAFHGEIP-KGIADYRNLTLIDLSANNLSGSVPDR----------IGELSKLEVLI  132 (833)
Q Consensus        84 ~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~----------~~~l~~L~~L~  132 (833)
                      +|++|+|+.... ..+..+++|+.|+|++|.+....+..          +..+++|+.||
T Consensus       121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            999999986533 56899999999999999987544432          55678888875

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.33  E-value=3.3e-14  Score=151.08  Aligned_cols=237  Identities=20%  Similarity=0.203  Sum_probs=132.3

Q ss_pred             ccCCCCCCEEECCCCCCCCc----ccccccCCCCCCEEeCcCCcCCCCC----------CcccCCCCCCCEEEccCCcCc
Q 003296           26 FNGFAGLEVLDFSSNNLNGN----INLQFDELVSLKSLNLSKNKFNGFL----------PINLGKTKALEELVLSGNAFH   91 (833)
Q Consensus        26 f~~l~~L~~L~Ls~N~l~~~----~~~~f~~l~~L~~L~Ls~N~l~~~~----------p~~~~~l~~L~~L~L~~N~l~   91 (833)
                      +.....|+.|+|++|.|...    +...+...++|+.|+++++.+....          ...+...++|++|+|++|.+.
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  106 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  106 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence            44456666777777666421    1223455666777777666543211          112345566777777777665


Q ss_pred             cc----CCccccCCCCCCEEeccCCcCCccCC-------------ccccCCCCCcEEECcCCcCCCCC----CcccccCC
Q 003296           92 GE----IPKGIADYRNLTLIDLSANNLSGSVP-------------DRIGELSKLEVLILSANNLDGRL----PTSLASIT  150 (833)
Q Consensus        92 ~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~-------------~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~  150 (833)
                      ..    +...+...++|+.|++++|.+.....             ......+.|+.|++++|.++...    ...+....
T Consensus       107 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~  186 (344)
T d2ca6a1         107 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR  186 (344)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred             cccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhh
Confidence            42    22233455667777777776531100             01124556777777777665321    22234556


Q ss_pred             ccCcccccccccccc-----CChhh--hhcCCEEeccccccccc----CCccCCCCCCCCEEecccccCcccCCCCCCcC
Q 003296          151 TLSRFAANQNKFSGS-----VPGGI--TRFLRNLDLSYNKLLGV----IPIDLLSHPNLQTIDLSVNMLEGSLPQNMSPN  219 (833)
Q Consensus       151 ~L~~l~l~~n~l~~~-----~p~~~--~~~L~~L~Ls~N~l~~~----~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~  219 (833)
                      +|+.+++++|.++..     +...+  .+.|+.|+|++|.+...    +...+..+++|++|+|++|.+++.-...+.  
T Consensus       187 ~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~--  264 (344)
T d2ca6a1         187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV--  264 (344)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH--
T ss_pred             hhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH--
Confidence            677777777766431     11111  34588888988887532    233456788999999999988643111110  


Q ss_pred             CcEEEcCCccccCCCCccccC--CCCCCCEEECCCCCCCC----CCCccc-cCCCCCcEEEccCCccCC
Q 003296          220 LVRLRLGTNLLIGEIPSATFT--SLEKLTYLELDNNSFTG----MIPQQL-GSCRSLTLLNLAQNELNG  281 (833)
Q Consensus       220 L~~L~l~~n~l~~~~~~~~f~--~l~~L~~L~L~~N~l~~----~~~~~~-~~l~~L~~L~L~~N~l~~  281 (833)
                                       ..+.  ....|++|++++|+|+.    .+...+ .++++|+.|+|++|.+..
T Consensus       265 -----------------~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         265 -----------------DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             -----------------HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             -----------------HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence                             0111  23567777777777753    133334 256777888888887753

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.2e-09  Score=101.13  Aligned_cols=66  Identities=30%  Similarity=0.263  Sum_probs=28.6

Q ss_pred             ccCCCCCCEEeCcCCcCCCCCC--cccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccCCcCC
Q 003296           50 FDELVSLKSLNLSKNKFNGFLP--INLGKTKALEELVLSGNAFHGEIPKGIADYRNLTLIDLSANNLS  115 (833)
Q Consensus        50 f~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  115 (833)
                      +..+++|++|+|++|+|+.+.+  ..+..+++|+.|+|++|.|+...+-.+....+|+.|+|++|.+.
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            3444555555555555543321  22334444444444444444332222223334444444444444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2e-09  Score=99.56  Aligned_cols=108  Identities=22%  Similarity=0.113  Sum_probs=69.0

Q ss_pred             CCCEEECCCCCCCCcccccccCCCCCCEEeCcCCcCCCCCCcccCCCCCCCEEEccCCcCcccC--CccccCCCCCCEEe
Q 003296           31 GLEVLDFSSNNLNGNINLQFDELVSLKSLNLSKNKFNGFLPINLGKTKALEELVLSGNAFHGEI--PKGIADYRNLTLID  108 (833)
Q Consensus        31 ~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~  108 (833)
                      ..+.||++++...    ..+..+..+..|++.+|.+. .++..+..+++|++|+|++|+|+...  +..+..+++|+.|+
T Consensus        23 ~~~~Ldls~l~~~----~~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~   97 (162)
T d1koha1          23 SQQALDLKGLRSD----PDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN   97 (162)
T ss_dssp             SSCCBCCCCCSSC----TTTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCC
T ss_pred             hhCeeecccCCCC----chhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccc
Confidence            4566777665432    12444555555555555443 33444556778888888888887543  34566778888888


Q ss_pred             ccCCcCCccCCccccCCCCCcEEECcCCcCCCCCC
Q 003296          109 LSANNLSGSVPDRIGELSKLEVLILSANNLDGRLP  143 (833)
Q Consensus       109 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  143 (833)
                      |++|.|+...+-.+....+|+.|+|++|.+.....
T Consensus        98 Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          98 LSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             CTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             cccCccccchhhhhhhccccceeecCCCCcCcCcc
Confidence            88888876555455555677888888888765443

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.13  E-value=3.5e-06  Score=84.02  Aligned_cols=142  Identities=15%  Similarity=0.056  Sum_probs=93.0

Q ss_pred             hcCCccccccCcccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCC-CCCcccceEEEecCCceEEEE
Q 003296          556 VANPLNVELKTRFSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLS-NSNVMTPLAYVLASDSAYLFY  634 (833)
Q Consensus       556 ~~~~~~~ig~g~~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~~~~~~~~~~~lv~  634 (833)
                      .|......+-++.+.||+... +++.++||+....    .......+.+|.+.++.+. +--+-++++++..++..++||
T Consensus        15 ~~~~~~~~~G~s~~~v~rv~~-~~~~~vlk~~~~~----~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~lv~   89 (263)
T d1j7la_          15 KYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSR----YKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLM   89 (263)
T ss_dssp             TSEEEECSCCCSSSEEEEEEC-SSCEEEEEEECGG----GTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEE
T ss_pred             ceEEEEcCCCCCCCcEEEEEe-CCCeEEEEEcCCC----cccchhhHHHHHHHHHHHhccCCCCcEEEEEecCCceEEEE
Confidence            343333333344578999864 6667888887322    1223446788999887764 333556678888888899999


Q ss_pred             eeCCCCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhhcCC-------------------------------------
Q 003296          635 EYAPKGTLFDVLHGCLENALDWASRYSIAVGVAQGLAFLHGFT-------------------------------------  677 (833)
Q Consensus       635 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~ylH~~~-------------------------------------  677 (833)
                      |+++|.++.+.....    -.   ...++.++++.++.||+..                                     
T Consensus        90 ~~l~G~~~~~~~~~~----~~---~~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (263)
T d1j7la_          90 SEADGVLCSEEYEDE----QS---PEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDT  162 (263)
T ss_dssp             ECCSSEEHHHHTTTC----SC---HHHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCCGGGGSTTC
T ss_pred             Eeccccccccccccc----cc---HHHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHHhhhhhhhcccccc
Confidence            999998886654321    11   2234555566666666320                                     


Q ss_pred             -------------------CCCeeecCCCccceeeCCCCCceeccceeeee
Q 003296          678 -------------------SNPILLLDLSTRNIFLKSLKEPQIGDIELCKV  709 (833)
Q Consensus       678 -------------------~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~  709 (833)
                                         ...++|+|+.|.||++++++.+.+.||+.+..
T Consensus       163 ~~~~~~~~~~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T d1j7la_         163 PFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             SCSSHHHHHHHHHHSCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             cchHHHHHHHHHHhcCCcCCcEEEEeeccCcceeecCCceEEEeechhccc
Confidence                               11378999999999999876667899886653

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.87  E-value=2.3e-05  Score=77.32  Aligned_cols=69  Identities=16%  Similarity=0.182  Sum_probs=51.2

Q ss_pred             ccEEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCC--CCcccceEEEecCCceEEEEeeCCCCChh
Q 003296          568 FSTYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSN--SNVMTPLAYVLASDSAYLFYEYAPKGTLF  643 (833)
Q Consensus       568 ~g~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H--~niv~~~~~~~~~~~~~lv~ey~~~g~L~  643 (833)
                      -+.||+...++|..+++|.-. ..      ....+.+|++.++.+..  -.+.++++++.+++..++||||++|-++.
T Consensus        24 ~~~v~r~~~~~~~~~vlK~~~-~~------~~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~~~~   94 (255)
T d1nd4a_          24 DAAVFRLSAQGRPVLFVKTDL-SG------ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLL   94 (255)
T ss_dssp             SCEEEEEECTTSCCEEEEEEC-SC------TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEETT
T ss_pred             CCeEEEEEeCCCCEEEEEeCC-cc------CHhHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeeccccc
Confidence            367999998888889999863 21      22357788888887743  23556678888888899999999986654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.66  E-value=7.3e-06  Score=75.23  Aligned_cols=87  Identities=11%  Similarity=0.015  Sum_probs=40.5

Q ss_pred             ccCCCCCCEEeCcCCcCCCCC----CcccCCCCCCCEEEccCCcCccc----CCccccCCCCCCEEeccCCcCCcc----
Q 003296           50 FDELVSLKSLNLSKNKFNGFL----PINLGKTKALEELVLSGNAFHGE----IPKGIADYRNLTLIDLSANNLSGS----  117 (833)
Q Consensus        50 f~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----  117 (833)
                      +...+.|++|+|++|.+....    ...+...+.|++|+|++|.|+..    +-.++...+.|+.|+|++|.+...    
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            344455555555555554211    11223344555555555555421    122344445566666665544321    


Q ss_pred             ---CCccccCCCCCcEEECcCC
Q 003296          118 ---VPDRIGELSKLEVLILSAN  136 (833)
Q Consensus       118 ---~~~~~~~l~~L~~L~Ls~N  136 (833)
                         +...+..-++|+.|+++.+
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHhCCCccEeeCcCC
Confidence               1223334456666666544

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=97.61  E-value=0.00014  Score=76.34  Aligned_cols=79  Identities=10%  Similarity=-0.043  Sum_probs=49.4

Q ss_pred             cccccCcccEEEEEEcCC-CceEEEEEccccchhhh---ccChhHHHHHHHHHhcCC-C-CC-cccceEEEecCCceEEE
Q 003296          561 NVELKTRFSTYYKAVMPS-GMSYFIKKLNWSDKIFQ---LGSHHKFDKELEVLGKLS-N-SN-VMTPLAYVLASDSAYLF  633 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~~-~~~vavK~~~~~~~~~~---~~~~~~~~~E~~~l~~l~-H-~n-iv~~~~~~~~~~~~~lv  633 (833)
                      +.+|.|..-.||+....+ |+.|+||.-....+...   .....+...|.+.|+.+. + |. +.+++  +.+++..++|
T Consensus        32 ~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~--~~d~~~~~lv  109 (392)
T d2pula1          32 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVF--YSDTEMAVTV  109 (392)
T ss_dssp             EECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEE--EEETTTTEEE
T ss_pred             EEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEE--EEcCCCCEEE
Confidence            468999999999999754 67899997532212111   122345667888887763 3 22 33333  4456677899


Q ss_pred             EeeCCCCC
Q 003296          634 YEYAPKGT  641 (833)
Q Consensus       634 ~ey~~~g~  641 (833)
                      |||+++..
T Consensus       110 mE~L~~~~  117 (392)
T d2pula1         110 MEDLSHLK  117 (392)
T ss_dssp             ECCCTTSE
T ss_pred             EeccCCcc
Confidence            99998754

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.58  E-value=1.5e-05  Score=73.10  Aligned_cols=110  Identities=14%  Similarity=0.117  Sum_probs=81.9

Q ss_pred             CCCCCCCEEECCCC-CCCC--c----ccccCCCCCCEEECCCCCCCCc----ccccccCCCCCCEEeCcCCcCCCC----
Q 003296            5 GGIDGLKLLNFSKN-ELVS--L----PTFNGFAGLEVLDFSSNNLNGN----INLQFDELVSLKSLNLSKNKFNGF----   69 (833)
Q Consensus         5 ~~l~~L~~L~ls~N-~l~~--i----~~f~~l~~L~~L~Ls~N~l~~~----~~~~f~~l~~L~~L~Ls~N~l~~~----   69 (833)
                      .+.+.|+.|+|+++ .+..  +    ..+...+.|+.|+|++|.+...    ....+...+.|+.|+|++|.|+..    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            35689999999975 5653  2    2466778999999999999732    223456678999999999999842    


Q ss_pred             CCcccCCCCCCCEEEccCCcCccc-------CCccccCCCCCCEEeccCCcC
Q 003296           70 LPINLGKTKALEELVLSGNAFHGE-------IPKGIADYRNLTLIDLSANNL  114 (833)
Q Consensus        70 ~p~~~~~l~~L~~L~L~~N~l~~~-------~p~~~~~l~~L~~L~Ls~N~l  114 (833)
                      +-..+...+.|++|+|++|.+...       +...+...+.|+.|+++.+..
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            123567789999999999976532       234455678899999987753

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.84  E-value=9.3e-05  Score=67.51  Aligned_cols=110  Identities=12%  Similarity=0.150  Sum_probs=52.5

Q ss_pred             CCCCCCEEECCC-CCCCCc----ccccccCCCCCCEEeCcCCcCCCCC----CcccCCCCCCCEEEccCCcCccc----C
Q 003296           28 GFAGLEVLDFSS-NNLNGN----INLQFDELVSLKSLNLSKNKFNGFL----PINLGKTKALEELVLSGNAFHGE----I   94 (833)
Q Consensus        28 ~l~~L~~L~Ls~-N~l~~~----~~~~f~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~----~   94 (833)
                      +.+.|+.|+|++ |.|+..    ...++...++|+.|+|++|.++...    -..+...+.|+.|++++|.+...    +
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            345566666654 334321    1122345555666666666554211    11233445566666666655421    2


Q ss_pred             CccccCCCCCCEEec--cCCcCCc----cCCccccCCCCCcEEECcCCc
Q 003296           95 PKGIADYRNLTLIDL--SANNLSG----SVPDRIGELSKLEVLILSANN  137 (833)
Q Consensus        95 p~~~~~l~~L~~L~L--s~N~l~~----~~~~~~~~l~~L~~L~Ls~N~  137 (833)
                      ...+...++|+.++|  ++|.+..    .+...+...++|+.|+++.+.
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            234455566665333  4455532    223334456666666665543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.75  E-value=0.00016  Score=65.87  Aligned_cols=110  Identities=17%  Similarity=0.171  Sum_probs=81.4

Q ss_pred             CCCCCCCEEECCC-CCCCC--c----ccccCCCCCCEEECCCCCCCCcc----cccccCCCCCCEEeCcCCcCCCC----
Q 003296            5 GGIDGLKLLNFSK-NELVS--L----PTFNGFAGLEVLDFSSNNLNGNI----NLQFDELVSLKSLNLSKNKFNGF----   69 (833)
Q Consensus         5 ~~l~~L~~L~ls~-N~l~~--i----~~f~~l~~L~~L~Ls~N~l~~~~----~~~f~~l~~L~~L~Ls~N~l~~~----   69 (833)
                      .+.+.|+.|++++ +.++.  +    .++...++|++|+|++|.++...    ...+...+.|+.|++++|.++..    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4568999999998 56754  2    24668899999999999987432    23466789999999999998642    


Q ss_pred             CCcccCCCCCCCEEEc--cCCcCcc----cCCccccCCCCCCEEeccCCcC
Q 003296           70 LPINLGKTKALEELVL--SGNAFHG----EIPKGIADYRNLTLIDLSANNL  114 (833)
Q Consensus        70 ~p~~~~~l~~L~~L~L--~~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l  114 (833)
                      +-..+...++|+.++|  ++|.+..    .+...+...++|+.|+++.+..
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            2245677889998666  4666653    2344566789999999988754

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.02  Score=57.65  Aligned_cols=134  Identities=11%  Similarity=0.048  Sum_probs=76.2

Q ss_pred             EEEEEEcCCCceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCc--ccce-----EEEecCCceEEEEeeCCCCCh
Q 003296          570 TYYKAVMPSGMSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNV--MTPL-----AYVLASDSAYLFYEYAPKGTL  642 (833)
Q Consensus       570 ~vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~ni--v~~~-----~~~~~~~~~~lv~ey~~~g~L  642 (833)
                      .||++..++|..|++|.-...     ....+++..|.+.+..+....+  +..+     ..+...+..+.|++|++|..+
T Consensus        37 ~vy~v~~~dg~~~VlK~~rp~-----~~s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~~~G~~~  111 (325)
T d1zyla1          37 RVYQFQDEDRRRFVVKFYRPE-----RWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGRQF  111 (325)
T ss_dssp             EEEEECCTTCCCEEEEEECTT-----TSCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCCEEC
T ss_pred             eeEEEEcCCCCEEEEEEeCCC-----CCCHHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEEEEeecCCcCC
Confidence            799999999999999987321     1234668888888877743222  1111     122345668899999987433


Q ss_pred             hh----h----------hhc----CC---CCCCCHHH----------------------HHHHHHHHHHHHHh-hhcCCC
Q 003296          643 FD----V----------LHG----CL---ENALDWAS----------------------RYSIAVGVAQGLAF-LHGFTS  678 (833)
Q Consensus       643 ~~----~----------l~~----~~---~~~l~~~~----------------------~~~i~~~i~~~l~y-lH~~~~  678 (833)
                      ..    .          +|.    ..   ....++..                      ....+.++...+.- ......
T Consensus       112 ~~~~~~~~~~lG~~LA~lH~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p  191 (325)
T d1zyla1         112 EADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHWREDFT  191 (325)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHHHCCSCSC
T ss_pred             CCCCHHHHHHHHHHHHHHHhhcccCCccccCCCCHHHHhhhhHHHHHHcCcCCHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence            21    0          111    00   01122211                      11122222222221 122234


Q ss_pred             CCeeecCCCccceeeCCCCCceeccceeeeee
Q 003296          679 NPILLLDLSTRNIFLKSLKEPQIGDIELCKVI  710 (833)
Q Consensus       679 ~~iiHrdlk~~Nill~~~~~~ki~dfgl~~~~  710 (833)
                      .++||+|+.+.|||++++  ..+.||+-|...
T Consensus       192 ~~liHgDlh~~NvL~~~~--~~~IDFdd~~~g  221 (325)
T d1zyla1         192 VLRLHGDCHAGNILWRDG--PMFVDLDDARNG  221 (325)
T ss_dssp             CEECCSSCSGGGEEESSS--EEECCCTTCCEE
T ss_pred             ceeecCCCCcccEEEeCC--ceEEechhcccC
Confidence            568999999999999743  458899877643

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.59  E-value=0.086  Score=54.34  Aligned_cols=72  Identities=10%  Similarity=0.038  Sum_probs=44.7

Q ss_pred             cccccCcccEEEEEEcCCC--------ceEEEEEccccchhhhccChhHHHHHHHHHhcCCCCCcc-cceEEEecCCceE
Q 003296          561 NVELKTRFSTYYKAVMPSG--------MSYFIKKLNWSDKIFQLGSHHKFDKELEVLGKLSNSNVM-TPLAYVLASDSAY  631 (833)
Q Consensus       561 ~~ig~g~~g~vy~~~~~~~--------~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv-~~~~~~~~~~~~~  631 (833)
                      +.++.|--=.+|+...+++        ..|.+++.. ..     .......+|.++++.+.-.+++ ++++++..    .
T Consensus        48 ~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g-~~-----~~~idr~~E~~i~~~ls~~gl~Pkll~~~~~----g  117 (395)
T d1nw1a_          48 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYF-NP-----ETESHLVAESVIFTLLSERHLGPKLYGIFSG----G  117 (395)
T ss_dssp             EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEEC-SC-----CCHHHHHHHHHHHHHHHHTTSSSCEEEEETT----E
T ss_pred             EEcCCccccceEEEEeCCCCccccCCCCcEEEEecC-Cc-----chhhHHHHHHHHHHHHHhCCCCCeEEEEcCC----c
Confidence            3456666778899886543        445565542 11     1223456899998888534554 56666532    6


Q ss_pred             EEEeeCCCCCh
Q 003296          632 LFYEYAPKGTL  642 (833)
Q Consensus       632 lv~ey~~~g~L  642 (833)
                      +||||++|..+
T Consensus       118 ~I~efi~g~~l  128 (395)
T d1nw1a_         118 RLEEYIPSRPL  128 (395)
T ss_dssp             EEECCCCEEEC
T ss_pred             eEEEEeccccC
Confidence            89999987544

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.25  E-value=0.071  Score=53.05  Aligned_cols=31  Identities=16%  Similarity=0.173  Sum_probs=27.2

Q ss_pred             CCCeeecCCCccceeeCCCCCceeccceeee
Q 003296          678 SNPILLLDLSTRNIFLKSLKEPQIGDIELCK  708 (833)
Q Consensus       678 ~~~iiHrdlk~~Nill~~~~~~ki~dfgl~~  708 (833)
                      ..++||+|+.+.||+++.+...-|.||+.|.
T Consensus       182 ~~giIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         182 PAGVIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             CEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             ccccccCCcchhhhhcccccceeEecccccc
Confidence            4579999999999999988777899998765