Citrus Sinensis ID: 003304
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 832 | 2.2.26 [Sep-21-2011] | |||||||
| Q6YSJ5 | 883 | Protein argonaute 16 OS=O | yes | no | 0.962 | 0.907 | 0.693 | 0.0 | |
| O48771 | 878 | Protein argonaute 6 OS=Ar | yes | no | 0.962 | 0.912 | 0.667 | 0.0 | |
| Q9SDG8 | 904 | Protein argonaute 4A OS=O | yes | no | 0.960 | 0.883 | 0.623 | 0.0 | |
| Q0JF58 | 911 | Protein argonaute 4B OS=O | no | no | 0.961 | 0.878 | 0.621 | 0.0 | |
| Q9ZVD5 | 924 | Protein argonaute 4 OS=Ar | no | no | 0.955 | 0.860 | 0.619 | 0.0 | |
| Q84VQ0 | 896 | Protein argonaute 9 OS=Ar | no | no | 0.971 | 0.901 | 0.605 | 0.0 | |
| Q5NBN9 | 889 | Protein argonaute 15 OS=O | no | no | 0.948 | 0.887 | 0.543 | 0.0 | |
| Q3E984 | 850 | Protein argonaute 8 OS=Ar | no | no | 0.903 | 0.884 | 0.541 | 0.0 | |
| Q5Z5B2 | 1038 | Protein argonaute 1D OS=O | no | no | 0.903 | 0.724 | 0.381 | 1e-136 | |
| Q6K972 | 1011 | Protein argonaute 1C OS=O | no | no | 0.941 | 0.774 | 0.374 | 1e-135 |
| >sp|Q6YSJ5|AGO16_ORYSJ Protein argonaute 16 OS=Oryza sativa subsp. japonica GN=AGO16 PE=2 SV=2 | Back alignment and function desciption |
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Score = 1164 bits (3011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/809 (69%), Positives = 670/809 (82%), Gaps = 8/809 (0%)
Query: 27 HVDLPRHSI-MSRRGVGNCGRRISLLTNHFKVSVNTTDAVFYHYTVTISGEDKRIAKGKG 85
H D P + ++R G G++I LL+NHF V ++ DAVFY Y+V+I ED ++ GKG
Sbjct: 12 HNDNPVKRVPIARPSFGREGKQIKLLSNHFTVKLSGIDAVFYQYSVSIKSEDDKVIDGKG 71
Query: 86 IGRKVVDKLYQTYSAELAGKRFAYDGEKSLYTVGPLPQNKFEFTVVLEESRAKQQNGSPR 145
IGRKV+DK+ QTYS+ELAGK FAYDGEK L+TVGPLPQN FEFTV+LEE+ ++ GS
Sbjct: 72 IGRKVMDKVLQTYSSELAGKEFAYDGEKCLFTVGPLPQNNFEFTVILEETSSRAAGGS-L 130
Query: 146 GRDSP-IGPGKRSKHSFQSKTFMVEISFATKIPLRSIALALKGNEVDNTQDALRVLDIVL 204
G SP G KRSK + +K +V IS+A KIPL+S+ALAL+G+E D+ QDALRVLDIVL
Sbjct: 131 GHGSPNQGDKKRSKCTHLAKKIVVGISYAAKIPLKSVALALQGSESDHAQDALRVLDIVL 190
Query: 205 RQQAANWGCLLVRQSFFHDDSRNLVDVGGGVSGIRGFHSSFRPTQGGLSLNMDVSTTMIL 264
RQQ A GCLLVRQSFF DD RNLVD+ GGVSG RG HSSFR T GGLSLNMDVSTTMI+
Sbjct: 191 RQQQAKRGCLLVRQSFFSDDFRNLVDLTGGVSGCRGLHSSFRTTIGGLSLNMDVSTTMIV 250
Query: 265 KPGPVIDFLIANQNVREPRFIDWTKAKKMLRNLRVKPRHRNMEFKIVGLSEKPCNQQFFP 324
PGPV DFL+ NQNVR+ R IDW +AKKML+NLRVK H NMEFKI+GLS++PC++Q FP
Sbjct: 251 TPGPVFDFLLTNQNVRDIRDIDWPRAKKMLKNLRVKAIHNNMEFKIIGLSDEPCSRQTFP 310
Query: 325 MKVKSTEGTNEGETLEITVYDYFTQHCRIELTYSAYLPCLDVGKPKRPNYLPLELCSLVS 384
MKV++ G++EGET+EITV +YF +++LT YLPCLDVGKPKRPNY+P+ELC +VS
Sbjct: 311 MKVRN--GSSEGETVEITVQEYFKSK-QVDLTM-PYLPCLDVGKPKRPNYVPIELCHMVS 366
Query: 385 LQRYTKALSSMQRASLVEKSRQKPQDRMRTLTDALRSYSYDEDPVLAACGISIGKQLTQV 444
LQRYTKALSS QRA+LVEKSRQKPQ+RMR +TDA+++ YD+DP+L++CGI I KQLT+V
Sbjct: 367 LQRYTKALSSQQRATLVEKSRQKPQERMRVVTDAVKNNRYDDDPILSSCGIKIEKQLTRV 426
Query: 445 DGRILEIPKLKVGKSEDCIPRNGRWNFNNKRFLEATRIDRWIVVNFSARCDTSHISRELI 504
DGR+L P L VG SEDCIP GRWN+NNKR E +I+RW +VNFSARCD S ISR+LI
Sbjct: 427 DGRVLSAPTLVVGNSEDCIPNRGRWNYNNKRLFEPVKIERWAIVNFSARCDMSRISRDLI 486
Query: 505 NCGRNKGIHIERPFTLIEEDQQTRRGNPVVRVERMFELITEKLPGPPQFILCVLPERKNS 564
NCGR KGI IERPFTL++ED Q+RR PVVRVE MFE + LPGPP+F+LCVLPERKN
Sbjct: 487 NCGRTKGIIIERPFTLVDEDSQSRRCTPVVRVESMFEKVKANLPGPPEFLLCVLPERKNC 546
Query: 565 DIYGPWKKKSLSDFGIATQCISPT-KINDQYLTNVLLKINSKLGGINSLLALEQSSLIPL 623
D+YGPWKKK+L + GI TQCI P+ K+NDQY TNVLLKIN+KLGG+NS L+LE +IP+
Sbjct: 547 DLYGPWKKKNLHEMGIITQCIVPSVKMNDQYYTNVLLKINAKLGGMNSKLSLEHRHMIPI 606
Query: 624 IKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLISRYRAAVRTQSSKVEMIDALYK 683
+ TPT+ILGMDVSHGSPGR+D+PS+AAVVGS+ WPLISRYRA+VRTQS KVEMID+L+K
Sbjct: 607 VNQTPTLILGMDVSHGSPGRADVPSIAAVVGSRCWPLISRYRASVRTQSPKVEMIDSLFK 666
Query: 684 PIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHL 743
P+ +G DDGIIRELLLDFY+TS+QRKPKQIIIFRDGVSESQF+QVLN+EL QIIKAYQ++
Sbjct: 667 PLDDGKDDGIIRELLLDFYKTSQQRKPKQIIIFRDGVSESQFSQVLNVELNQIIKAYQYM 726
Query: 744 GEADIPKFTVIVAQKNHHTKLFQASGPENVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTS 803
+ IPKFTVI+AQKNHHTKLFQ + P+NVPPGTVVD+ IVHPR YDFYM AHAG IGTS
Sbjct: 727 DQGPIPKFTVIIAQKNHHTKLFQENTPDNVPPGTVVDSGIVHPRQYDFYMYAHAGPIGTS 786
Query: 804 RPAHYHVLLDEIGFSPDDLQNLIHSLSYV 832
RP HYHVLLDEIGF PDD+Q L+ SLSYV
Sbjct: 787 RPTHYHVLLDEIGFLPDDVQKLVLSLSYV 815
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Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O48771|AGO6_ARATH Protein argonaute 6 OS=Arabidopsis thaliana GN=AGO6 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9SDG8|AGO4A_ORYSJ Protein argonaute 4A OS=Oryza sativa subsp. japonica GN=AGO4A PE=2 SV=1 | Back alignment and function description |
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| >sp|Q0JF58|AGO4B_ORYSJ Protein argonaute 4B OS=Oryza sativa subsp. japonica GN=AGO4B PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9ZVD5|AGO4_ARATH Protein argonaute 4 OS=Arabidopsis thaliana GN=AGO4 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q84VQ0|AGO9_ARATH Protein argonaute 9 OS=Arabidopsis thaliana GN=AGO9 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q5NBN9|AGO15_ORYSJ Protein argonaute 15 OS=Oryza sativa subsp. japonica GN=AGO15 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q3E984|AGO8_ARATH Protein argonaute 8 OS=Arabidopsis thaliana GN=AGO8 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q5Z5B2|AGO1D_ORYSJ Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6K972|AGO1C_ORYSJ Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 832 | ||||||
| 359485642 | 960 | PREDICTED: protein argonaute 16-like [Vi | 0.974 | 0.844 | 0.793 | 0.0 | |
| 224129054 | 869 | argonaute protein group [Populus trichoc | 0.959 | 0.918 | 0.818 | 0.0 | |
| 297739219 | 900 | unnamed protein product [Vitis vinifera] | 0.951 | 0.88 | 0.776 | 0.0 | |
| 449444729 | 904 | PREDICTED: protein argonaute 16-like [Cu | 0.972 | 0.894 | 0.781 | 0.0 | |
| 449481126 | 903 | PREDICTED: protein argonaute 16-like [Cu | 0.971 | 0.894 | 0.777 | 0.0 | |
| 409127965 | 903 | AGO6 [Solanum lycopersicum] | 1.0 | 0.921 | 0.699 | 0.0 | |
| 356546333 | 902 | PREDICTED: protein argonaute 16-like [Gl | 0.995 | 0.917 | 0.712 | 0.0 | |
| 255587084 | 863 | eukaryotic translation initiation factor | 0.936 | 0.902 | 0.713 | 0.0 | |
| 357154972 | 882 | PREDICTED: protein argonaute 16-like [Br | 0.961 | 0.907 | 0.684 | 0.0 | |
| 251764798 | 883 | RecName: Full=Protein argonaute 16; Shor | 0.962 | 0.907 | 0.693 | 0.0 |
| >gi|359485642|ref|XP_002271447.2| PREDICTED: protein argonaute 16-like [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1371 bits (3549), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 645/813 (79%), Positives = 730/813 (89%), Gaps = 2/813 (0%)
Query: 22 NVKPEHVDLPRHSIMSRRGVGNCGRRISLLTNHFKVSVNTTDAVFYHYTVTISGEDKRIA 81
NVKPE V P+ S++SRRGVG GRRISLLTNHFKVS+N +DA+FY Y+V+I+ EDKR+
Sbjct: 80 NVKPEQVGPPKRSVISRRGVGTAGRRISLLTNHFKVSMNISDAMFYQYSVSITSEDKRVV 139
Query: 82 KGKGIGRKVVDKLYQTYSAELAGKRFAYDGEKSLYTVGPLPQNKFEFTVVLEESRAKQQN 141
GKGIGRKV+D+LY TYS+ELAGK+FAYDGEKSLYTVGPLPQN FEFTVV+EE A+ N
Sbjct: 140 DGKGIGRKVIDRLYLTYSSELAGKKFAYDGEKSLYTVGPLPQNNFEFTVVVEELLARSAN 199
Query: 142 GSPRGRDSPIGPGKRSKHSFQSKTFMVEISFATKIPLRSIALALKGNEVD-NTQDALRVL 200
GSP SP G GKR K SF+SKTF V IS+A KIPL+SI LALKG+EVD N QDALRVL
Sbjct: 200 GSPGANGSPSGNGKRPKCSFRSKTFKVAISYAAKIPLKSIVLALKGSEVDNNAQDALRVL 259
Query: 201 DIVLRQQAANWGCLLVRQSFFHDDSRNLVDVGGGVSGIRGFHSSFRPTQGGLSLNMDVST 260
DI+LRQQAAN GCLLVRQSFFHDDSR+ DVGGGV+G RGFHSSFR TQGGLSLNMDVST
Sbjct: 260 DIILRQQAANRGCLLVRQSFFHDDSRHFTDVGGGVTGCRGFHSSFRTTQGGLSLNMDVST 319
Query: 261 TMILKPGPVIDFLIANQNVREPRFIDWTKAKKMLRNLRVKPRHRNMEFKIVGLSEKPCNQ 320
TMIL PGPVIDFL+ANQN+R+PR I+W KAKKML+N+R+K +H NMEFKI GLSEKPCN
Sbjct: 320 TMILTPGPVIDFLLANQNIRDPRHINWEKAKKMLKNMRIKTKHSNMEFKITGLSEKPCNL 379
Query: 321 QFFPMKVKSTEGTN-EGETLEITVYDYFTQHCRIELTYSAYLPCLDVGKPKRPNYLPLEL 379
Q FP+K+++++ N E +T+EITVY+YFT+H IEL+ SAY+PCL+VGKPKRPNYLPLEL
Sbjct: 380 QHFPLKMRNSDDANDEDQTVEITVYEYFTKHRGIELSISAYMPCLNVGKPKRPNYLPLEL 439
Query: 380 CSLVSLQRYTKALSSMQRASLVEKSRQKPQDRMRTLTDALRSYSYDEDPVLAACGISIGK 439
C LVSLQRYTKALS MQR++LVEKSRQKPQDR+RT+TDA+R+Y YDEDPVL+ACGISI +
Sbjct: 440 CLLVSLQRYTKALSIMQRSTLVEKSRQKPQDRIRTVTDAVRNYQYDEDPVLSACGISIDR 499
Query: 440 QLTQVDGRILEIPKLKVGKSEDCIPRNGRWNFNNKRFLEATRIDRWIVVNFSARCDTSHI 499
QLTQVDGR+LE PKLKVG SEDCIPRNGRWNFN+K+ L RI+RW VVNFSARCDTSH+
Sbjct: 500 QLTQVDGRVLEAPKLKVGNSEDCIPRNGRWNFNHKKLLTPVRIERWAVVNFSARCDTSHL 559
Query: 500 SRELINCGRNKGIHIERPFTLIEEDQQTRRGNPVVRVERMFELITEKLPGPPQFILCVLP 559
SRELINCGRNKGI IERP TLIEED Q+RR +PV RVE+MFE++ KLPGPP+F+LCVLP
Sbjct: 560 SRELINCGRNKGILIERPHTLIEEDPQSRRASPVARVEKMFEIVRAKLPGPPEFLLCVLP 619
Query: 560 ERKNSDIYGPWKKKSLSDFGIATQCISPTKINDQYLTNVLLKINSKLGGINSLLALEQSS 619
E+KNS+IYGPWKK+SLSDFGI TQCISPTKINDQYLTNVLLKIN+KLGG NSLLA+E +S
Sbjct: 620 EKKNSEIYGPWKKRSLSDFGIVTQCISPTKINDQYLTNVLLKINTKLGGTNSLLAIEHTS 679
Query: 620 LIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLISRYRAAVRTQSSKVEMID 679
IPLIKDTPTMILGMDVSHGSPG++D+PS+AAVVGS+ WPLISRYRA+VRTQS KVEMID
Sbjct: 680 RIPLIKDTPTMILGMDVSHGSPGQADVPSIAAVVGSRCWPLISRYRASVRTQSPKVEMID 739
Query: 680 ALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKA 739
ALYKP+ANGNDDG+IRELL+DF++TS RKP QI+IFRDGVSESQFNQVLNIELEQI+KA
Sbjct: 740 ALYKPLANGNDDGMIRELLVDFFQTSNGRKPAQIVIFRDGVSESQFNQVLNIELEQIMKA 799
Query: 740 YQHLGEADIPKFTVIVAQKNHHTKLFQASGPENVPPGTVVDTRIVHPRNYDFYMCAHAGM 799
YQHLGE D PKFTVIVAQKNHHTKLFQA PENVPPGTVVDT+IVHPRNYDFYMCAHAGM
Sbjct: 800 YQHLGEVDFPKFTVIVAQKNHHTKLFQAGAPENVPPGTVVDTKIVHPRNYDFYMCAHAGM 859
Query: 800 IGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYV 832
IGTSRPAHYHVLLDEI FSPDDLQ+LIHSLSYV
Sbjct: 860 IGTSRPAHYHVLLDEISFSPDDLQHLIHSLSYV 892
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129054|ref|XP_002320489.1| argonaute protein group [Populus trichocarpa] gi|222861262|gb|EEE98804.1| argonaute protein group [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|297739219|emb|CBI28870.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449444729|ref|XP_004140126.1| PREDICTED: protein argonaute 16-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449481126|ref|XP_004156089.1| PREDICTED: protein argonaute 16-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|409127965|gb|AFV15385.1| AGO6 [Solanum lycopersicum] | Back alignment and taxonomy information |
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| >gi|356546333|ref|XP_003541581.1| PREDICTED: protein argonaute 16-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|255587084|ref|XP_002534129.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223525814|gb|EEF28257.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|357154972|ref|XP_003576965.1| PREDICTED: protein argonaute 16-like [Brachypodium distachyon] | Back alignment and taxonomy information |
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| >gi|251764798|sp|Q6YSJ5.2|AGO16_ORYSJ RecName: Full=Protein argonaute 16; Short=OsAGO16; AltName: Full=OsAGO6; AltName: Full=Protein ZWILLE/PINHEAD-like 1 | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 832 | ||||||
| TAIR|locus:2059370 | 878 | AGO6 "ARGONAUTE 6" [Arabidopsi | 0.968 | 0.917 | 0.661 | 1.4e-286 | |
| TAIR|locus:2059258 | 924 | AGO4 "ARGONAUTE 4" [Arabidopsi | 0.955 | 0.860 | 0.612 | 2.6e-269 | |
| TAIR|locus:2179008 | 896 | AGO9 "ARGONAUTE 9" [Arabidopsi | 0.966 | 0.897 | 0.598 | 2.5e-264 | |
| TAIR|locus:2147072 | 850 | AT5G21030 [Arabidopsis thalian | 0.818 | 0.801 | 0.535 | 6.8e-219 | |
| TAIR|locus:2170897 | 988 | AGO10 "ARGONAUTE 10" [Arabidop | 0.852 | 0.717 | 0.369 | 8.9e-128 | |
| UNIPROTKB|Q69VD5 | 979 | PHN1 "Protein argonaute PNH1" | 0.849 | 0.722 | 0.368 | 3e-127 | |
| TAIR|locus:2057851 | 997 | AGO5 "ARGONAUTE 5" [Arabidopsi | 0.781 | 0.651 | 0.375 | 1.2e-121 | |
| UNIPROTKB|Q851R2 | 1058 | MEL1 "Protein argonaute MEL1" | 0.716 | 0.563 | 0.354 | 4e-104 | |
| UNIPROTKB|F1P3Z1 | 847 | EIF2C4 "Protein argonaute-4" [ | 0.840 | 0.825 | 0.327 | 5.2e-102 | |
| UNIPROTKB|Q9HCK5 | 861 | EIF2C4 "Protein argonaute-4" [ | 0.840 | 0.811 | 0.325 | 5.2e-102 |
| TAIR|locus:2059370 AGO6 "ARGONAUTE 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2753 (974.2 bits), Expect = 1.4e-286, P = 1.4e-286
Identities = 539/815 (66%), Positives = 630/815 (77%)
Query: 22 NVKPEHVDLPRHSIMSRRGVGNCGRRISLLTNHFKVSVNTTDAVFYHYTVTISGEDXXXX 81
+++PE + I +RRGVG G I L TNHF VSV D VFY YTV+I+ E+
Sbjct: 13 SIEPEQPSHRDYDITTRRGVGTTGNPIELCTNHFNVSVRQPDVVFYQYTVSITTENGDAV 72
Query: 82 XXXXXXXXVVDKLYQTYSAELAGKRFAYDGEKSLYTVGPLPQNKFEFTVVLEESRAKQQN 141
++D+L++TYS++L GKR AYDGEK+LYTVGPLPQN+F+F V++E S +K+
Sbjct: 73 DGTGISRKLMDQLFKTYSSDLDGKRLAYDGEKTLYTVGPLPQNEFDFLVIVEGSFSKRDC 132
Query: 142 GSPRGRDSPIGPGKRSKHSFQSKTFMVEISFATKIPLRSIALALKGNEVDN--TQDALRV 199
G G S G KRSK SF +++ V+I +A +IPL+++ +G + QDALRV
Sbjct: 133 GVSDGGSSS-GTCKRSKRSFLPRSYKVQIHYAAEIPLKTVLGTQRGAYTPDKSAQDALRV 191
Query: 200 LDIVLRQQAANWGCLLVRQSFFHDDSRNLVDVGGGVSGIRGFHSSFRPTQGGLSLNMDVS 259
LDIVLRQQAA GCLLVRQ+FFH D + VGGGV GIRG HSSFRPT GGLSLN+DVS
Sbjct: 192 LDIVLRQQAAERGCLLVRQAFFHSDGHPM-KVGGGVIGIRGLHSSFRPTHGGLSLNIDVS 250
Query: 260 TTMILKPGPVIDFLIANQNVREPRFIDWTKAKKMLRNLRVKPRHRNMEFKIVGLSEKPCN 319
TTMIL+PGPVI+FL ANQ+V PR IDW KA KML+++RVK HRNMEFKI+GLS KPCN
Sbjct: 251 TTMILEPGPVIEFLKANQSVETPRQIDWIKAAKMLKHMRVKATHRNMEFKIIGLSSKPCN 310
Query: 320 QQFFPMKVKSTEGTNEGETLEITVYDYFTQHCRIELTYSAYLPCLDVGKPKRPNYLPLEL 379
QQ F MK+K +G E EITVYDYF Q E SAY PCLDVGKP RPNYLPLE
Sbjct: 311 QQLFSMKIK--DGEREVPIREITVYDYFKQ-TYTEPISSAYFPCLDVGKPDRPNYLPLEF 367
Query: 380 CSLVSLQRYTKALSSMQRASLVEKSRQKPQDRMRTLTDALRSYSYDEDPVLAACGISIGK 439
C+LVSLQRYTK LS QR LVE SRQKP +R++TL DA+ +Y YD+DP LA CGISI K
Sbjct: 368 CNLVSLQRYTKPLSGRQRVLLVESSRQKPLERIKTLNDAMHTYCYDKDPFLAGCGISIEK 427
Query: 440 QLTQVDGRILEIPKLKVGKSEDCIPRNGRWNFNNKRFLEATRIDRWIVVNFSARCDTSHI 499
++TQV+GR+L+ P LK GK+ED P NGRWNFNNK LE I W +VNFS CD+SHI
Sbjct: 428 EMTQVEGRVLKPPMLKFGKNEDFQPCNGRWNFNNKMLLEPRAIKSWAIVNFSFPCDSSHI 487
Query: 500 SRELINCGRNKGIHIERPFTLIEEDQQTRRGNPVVRVERMFELITEKLPGPPQFILCVLP 559
SRELI+CG KGI I+RPF L+EED Q ++ PV RVE+M + K P PP FILC+LP
Sbjct: 488 SRELISCGMRKGIEIDRPFALVEEDPQYKKAGPVERVEKMIATMKLKFPDPPHFILCILP 547
Query: 560 ERKNSDIYGPWKKKSLSDFGIATQCISPTKINDQYLTNVLLKINSKLGGINSLLALEQSS 619
ERK SDIYGPWKK L++ GI TQCI P KI+DQYLTNVLLKINSKLGGINSLL +E S
Sbjct: 548 ERKTSDIYGPWKKICLTEEGIHTQCICPIKISDQYLTNVLLKINSKLGGINSLLGIEYSY 607
Query: 620 LIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLISRYRAAVRTQSSKVEMID 679
IPLI PT+ILGMDVSHG PGR+D+PSVAAVVGS+ WPLISRYRAAVRTQS ++EMID
Sbjct: 608 NIPLINKIPTLILGMDVSHGPPGRADVPSVAAVVGSKCWPLISRYRAAVRTQSPRLEMID 667
Query: 680 ALYKPIANGN--DDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQII 737
+L++PI N D+GI+ EL ++FYRTS+ RKPKQIIIFRDGVSESQF QVL IE++QII
Sbjct: 668 SLFQPIENTEKGDNGIMNELFVEFYRTSRARKPKQIIIFRDGVSESQFEQVLKIEVDQII 727
Query: 738 KAYQHLGEADIPKFTVIVAQKNHHTKLFQASGPENVPPGTVVDTRIVHPRNYDFYMCAHA 797
KAYQ LGE+D+PKFTVIVAQKNHHTKLFQA GPENVP GTVVDT+IVHP NYDFYMCAHA
Sbjct: 728 KAYQRLGESDVPKFTVIVAQKNHHTKLFQAKGPENVPAGTVVDTKIVHPTNYDFYMCAHA 787
Query: 798 GMIGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYV 832
G IGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYV
Sbjct: 788 GKIGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYV 822
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| TAIR|locus:2059258 AGO4 "ARGONAUTE 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2179008 AGO9 "ARGONAUTE 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2147072 AT5G21030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2170897 AGO10 "ARGONAUTE 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q69VD5 PHN1 "Protein argonaute PNH1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2057851 AGO5 "ARGONAUTE 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q851R2 MEL1 "Protein argonaute MEL1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1P3Z1 EIF2C4 "Protein argonaute-4" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9HCK5 EIF2C4 "Protein argonaute-4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O48771 | AGO6_ARATH | No assigned EC number | 0.6678 | 0.9627 | 0.9123 | yes | no |
| O77503 | AGO2_RABIT | 3, ., 1, ., 2, 6, ., n, 2 | 0.3288 | 0.8786 | 0.8702 | yes | no |
| Q9UL18 | AGO1_HUMAN | No assigned EC number | 0.3240 | 0.8786 | 0.8529 | yes | no |
| Q9QZ81 | AGO2_RAT | 3, ., 1, ., 2, 6, ., n, 2 | 0.3288 | 0.8786 | 0.85 | yes | no |
| Q9SDG8 | AGO4A_ORYSJ | No assigned EC number | 0.6236 | 0.9603 | 0.8838 | yes | no |
| Q8CJG1 | AGO1_MOUSE | No assigned EC number | 0.3240 | 0.8786 | 0.8529 | yes | no |
| Q6YSJ5 | AGO16_ORYSJ | No assigned EC number | 0.6934 | 0.9627 | 0.9071 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | AGO902 | argonaute protein group (870 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 832 | |||
| PLN03202 | 900 | PLN03202, PLN03202, protein argonaute; Provisional | 0.0 | |
| cd04657 | 426 | cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain | 1e-160 | |
| pfam02171 | 296 | pfam02171, Piwi, Piwi domain | 6e-96 | |
| smart00950 | 301 | smart00950, Piwi, This domain is found in the prot | 2e-94 | |
| cd04658 | 448 | cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P | 2e-72 | |
| cd02826 | 393 | cd02826, Piwi-like, Piwi-like: PIWI domain | 3e-52 | |
| pfam02170 | 114 | pfam02170, PAZ, PAZ domain | 3e-32 | |
| cd02846 | 114 | cd02846, PAZ_argonaute_like, PAZ domain, argonaute | 8e-30 | |
| pfam08699 | 52 | pfam08699, DUF1785, Domain of unknown function (DU | 6e-19 | |
| smart00949 | 138 | smart00949, PAZ, This domain is named PAZ after th | 5e-10 | |
| cd04659 | 404 | cd04659, Piwi_piwi-like_ProArk, Piwi_piwi-like_Pro | 2e-08 | |
| cd02825 | 115 | cd02825, PAZ, PAZ domain, named PAZ after the prot | 9e-06 |
| >gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional | Back alignment and domain information |
|---|
Score = 1592 bits (4125), Expect = 0.0
Identities = 580/831 (69%), Positives = 687/831 (82%), Gaps = 10/831 (1%)
Query: 11 PLPPSPPLMPPNVKPEHVDL------PRHSIMSRRGVGNCGRRISLLTNHFKVSVNTTDA 64
LPP PP++PPNV P ++ P+ M+RRG G+ G++I LLTNHFKVSVN D
Sbjct: 3 ALPPPPPVVPPNVVPIKLEPTKKPSKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDG 62
Query: 65 VFYHYTVTISGEDKRIAKGKGIGRKVVDKLYQTYSAELAGKRFAYDGEKSLYTVGPLPQN 124
F+HY+V+++ ED R GKGIGRKV+DK+ +TYS++LAGK FAYDGEKSL+TVG LPQN
Sbjct: 63 HFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSDLAGKDFAYDGEKSLFTVGALPQN 122
Query: 125 KFEFTVVLEESRAKQQ--NGSPRGRDSPIGPG-KRSKHSFQSKTFMVEISFATKIPLRSI 181
K EFTVVLE+ + + NGSP G SP G KRS+ +QSKTF VEISFA KIP+++I
Sbjct: 123 KLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAI 182
Query: 182 ALALKGNEVDNTQDALRVLDIVLRQQAANWGCLLVRQSFFHDDSRNLVDVGGGVSGIRGF 241
A AL+G E +N+QDALRVLDI+LRQ AA GCLLVRQSFFH+D +N VD+GGGV G RGF
Sbjct: 183 ANALRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGF 242
Query: 242 HSSFRPTQGGLSLNMDVSTTMILKPGPVIDFLIANQNVREPRFIDWTKAKKMLRNLRVKP 301
HSSFR TQGGLSLN+DVSTTMI++PGPV+DFLIANQNVR+P IDW+KAK+ML+NLRVK
Sbjct: 243 HSSFRTTQGGLSLNIDVSTTMIVQPGPVVDFLIANQNVRDPFQIDWSKAKRMLKNLRVKV 302
Query: 302 RHRNMEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGETLEITVYDYFTQHCRIELTYSAYL 361
N E+KI GLSEKPC +Q F +K ++ G NE ET+EITVYDYF +H IEL YS L
Sbjct: 303 SPSNQEYKITGLSEKPCKEQTFSLKQRNGNG-NEVETVEITVYDYFVKHRGIELRYSGDL 361
Query: 362 PCLDVGKPKRPNYLPLELCSLVSLQRYTKALSSMQRASLVEKSRQKPQDRMRTLTDALRS 421
PC++VGKPKRP Y P+ELCSLVSLQRYTKALS++QR+SLVEKSRQKPQ+RM+ LTDAL+S
Sbjct: 362 PCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDALKS 421
Query: 422 YSYDEDPVLAACGISIGKQLTQVDGRILEIPKLKVGKSEDCIPRNGRWNFNNKRFLEATR 481
+YD DP+L +CGISI Q TQV+GR+L PKLKVG ED PRNGRWNFNNK+ +E T+
Sbjct: 422 SNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGEDFFPRNGRWNFNNKKLVEPTK 481
Query: 482 IDRWIVVNFSARCDTSHISRELINCGRNKGIHIERPFTLIEEDQQTRRGNPVVRVERMFE 541
I+RW VVNFSARCD H+ R+LI CG KGI+IE PF + EE+ Q RR P VRVE+MFE
Sbjct: 482 IERWAVVNFSARCDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFE 541
Query: 542 LITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISPTKINDQYLTNVLLK 601
I KLPGPPQF+LC+LPERKNSDIYGPWKKK+LS+FGI TQCI+PT++NDQYLTNVLLK
Sbjct: 542 QIQSKLPGPPQFLLCILPERKNSDIYGPWKKKNLSEFGIVTQCIAPTRVNDQYLTNVLLK 601
Query: 602 INSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLI 661
IN+KLGG+NSLLA+E S IPL+ PT+ILGMDVSHGSPG+SD+PS+AAVV S+ WPLI
Sbjct: 602 INAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVPSIAAVVSSRQWPLI 661
Query: 662 SRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVS 721
SRYRA+VRTQS KVEMID+L+KP+ + +DDGIIRELLLDFY +S +RKP+QIIIFRDGVS
Sbjct: 662 SRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVS 721
Query: 722 ESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASGPENVPPGTVVDT 781
ESQFNQVLNIEL+QII+A + L E+ PKFTVIVAQKNHHTK FQA P+NVPPGTVVD
Sbjct: 722 ESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAGSPDNVPPGTVVDN 781
Query: 782 RIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYV 832
+I HPRN DFYMCAHAGMIGT+RP HYHVLLDEIGFS DDLQ L+HSLSYV
Sbjct: 782 KICHPRNNDFYMCAHAGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYV 832
|
Length = 900 |
| >gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|216915 pfam02171, Piwi, Piwi domain | Back alignment and domain information |
|---|
| >gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives | Back alignment and domain information |
|---|
| >gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes | Back alignment and domain information |
|---|
| >gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain | Back alignment and domain information |
|---|
| >gnl|CDD|216914 pfam02170, PAZ, PAZ domain | Back alignment and domain information |
|---|
| >gnl|CDD|239212 cd02846, PAZ_argonaute_like, PAZ domain, argonaute_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|219976 pfam08699, DUF1785, Domain of unknown function (DUF1785) | Back alignment and domain information |
|---|
| >gnl|CDD|198017 smart00949, PAZ, This domain is named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >gnl|CDD|240017 cd04659, Piwi_piwi-like_ProArk, Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria | Back alignment and domain information |
|---|
| >gnl|CDD|239207 cd02825, PAZ, PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 832 | |||
| PLN03202 | 900 | protein argonaute; Provisional | 100.0 | |
| KOG1041 | 876 | consensus Translation initiation factor 2C (eIF-2C | 100.0 | |
| KOG1042 | 845 | consensus Germ-line stem cell division protein Hiw | 100.0 | |
| cd04657 | 426 | Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut | 100.0 | |
| cd04658 | 448 | Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain | 100.0 | |
| cd02826 | 393 | Piwi-like Piwi-like: PIWI domain. Domain found in | 100.0 | |
| PF02171 | 302 | Piwi: Piwi domain; InterPro: IPR003165 This domain | 100.0 | |
| cd04659 | 404 | Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI | 100.0 | |
| PF02170 | 135 | PAZ: PAZ domain; InterPro: IPR003100 This domain i | 99.88 | |
| cd02825 | 115 | PAZ PAZ domain, named PAZ after the proteins Piwi | 99.77 | |
| cd02846 | 114 | PAZ_argonaute_like PAZ domain, argonaute_like subf | 99.77 | |
| cd02845 | 117 | PAZ_piwi_like PAZ domain, Piwi_like subfamily. In | 99.75 | |
| PF08699 | 52 | DUF1785: Domain of unknown function (DUF1785); Int | 99.49 | |
| cd02844 | 135 | PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( | 99.42 | |
| cd02843 | 122 | PAZ_dicer_like PAZ domain, dicer_like subfamily. D | 98.58 | |
| COG1431 | 685 | Argonaute homolog, implicated in RNA metabolism [T | 96.37 | |
| PF08459 | 155 | UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; I | 89.79 | |
| TIGR00194 | 574 | uvrC excinuclease ABC, C subunit. This family cons | 81.5 |
| >PLN03202 protein argonaute; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-162 Score=1458.08 Aligned_cols=804 Identities=71% Similarity=1.158 Sum_probs=700.7
Q ss_pred ccCCCcccccCCCCCCCCCCEEEEEEEEEEEEeccCCeEEEEEEEEeecCCcccccCchhhHHHHHHHHHHhhhhhcCCc
Q 003304 27 HVDLPRHSIMSRRGVGNCGRRISLLTNHFKVSVNTTDAVFYHYTVTISGEDKRIAKGKGIGRKVVDKLYQTYSAELAGKR 106 (832)
Q Consensus 27 ~~~~~~~~~~~RP~~Gt~G~~i~l~tN~f~i~~~~~~~~~y~Y~V~i~~~~~~~~~~k~~~r~i~~~l~~~~~~~~~~~~ 106 (832)
....+.+.+++||||||.|++|.|+||||+|++..++..+|||||+|+|+.++++++++++++|+.++++++...+.+..
T Consensus 25 ~~~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 104 (900)
T PLN03202 25 KPSKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSDLAGKD 104 (900)
T ss_pred cccccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHHhhCCCc
Confidence 33556668899999999999999999999999765567899999999876545666778889999999887755666668
Q ss_pred eEEeCCcceeecCCCCCCceEEEEEeccchhccc--CCCCCCCCCC-CCCCCCCCCCCCCceEEEEEEEecccChHHHHH
Q 003304 107 FAYDGEKSLYTVGPLPQNKFEFTVVLEESRAKQQ--NGSPRGRDSP-IGPGKRSKHSFQSKTFMVEISFATKIPLRSIAL 183 (832)
Q Consensus 107 ~~yDG~~~lyS~~~L~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~i~~~~~i~l~~l~~ 183 (832)
+||||+++|||+.+|+.+..++.|+++++...++ ++++++.+.| +++.+|.+...+.+.|+|+|+++++|++.+|.+
T Consensus 105 ~~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~ 184 (900)
T PLN03202 105 FAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIAN 184 (900)
T ss_pred eeecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHH
Confidence 9999999999999999877788888765321110 0111111111 112222223346789999999999999999999
Q ss_pred HHcCCCCCchhHHHHHHHHHHhccccccCceecccccccCCCCCeeecCCCEEeeecceEEEEeeCCeeeEeeeeeeeee
Q 003304 184 ALKGNEVDNTQDALRVLDIVLRQQAANWGCLLVRQSFFHDDSRNLVDVGGGVSGIRGFHSSFRPTQGGLSLNMDVSTTMI 263 (832)
Q Consensus 184 ~l~g~~~~~~~~~iq~lniilr~~~~~~~~~~~g~~ff~~~~~~~~~l~~g~e~~~Gf~~Svr~~~~~l~LniDv~~~~F 263 (832)
||.|.......++||+||+|||+.+...+++.+||+||.++.....++++|+|+|+||++|||+++++|+||+|+++++|
T Consensus 185 ~l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F 264 (900)
T PLN03202 185 ALRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMI 264 (900)
T ss_pred HHcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeee
Confidence 99998777788999999999999988777888899999876555568999999999999999999999999999999999
Q ss_pred eccccHHHHHHHhcCCCCCCcccHHHHHhhhcCcEEEeeccCceEEEeecCCCCCCcccccccccCCCCCCCCCceeeeH
Q 003304 264 LKPGPVIDFLIANQNVREPRFIDWTKAKKMLRNLRVKPRHRNMEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGETLEITV 343 (832)
Q Consensus 264 ~~~~~l~d~l~~~~~~~~~~~~~~~~i~~~Lkgl~V~~~~~~r~~~I~~l~~~~a~~~~F~~~~~~~~g~~~~~g~~isV 343 (832)
+++++|+|+|.+..+.++....++.++.++|+|++|.++|++++|+|.||++.++++.+|.+++.+.+|+ ++.+++|||
T Consensus 265 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lkGl~V~t~~~~k~yrI~~i~~~~a~~~~F~~~~~~~~~~-~~~~~~iSv 343 (900)
T PLN03202 265 VQPGPVVDFLIANQNVRDPFQIDWSKAKRMLKNLRVKVSPSNQEYKITGLSEKPCKEQTFSLKQRNGNGN-EVETVEITV 343 (900)
T ss_pred ecCCcHHHHHHHhcCcCCccchhHHHHHHHhcCCEEEEecCCceEEEeeccCCCCcceEEEcccCCcccc-cCCcceEEH
Confidence 9999999999987655443334677899999999999999999999999999999999998764322121 112468999
Q ss_pred HHHHHHhcCCccccCC-CCcEEecCCCCCcccccccceEEcCCccccccCCHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 003304 344 YDYFTQHCRIELTYSA-YLPCLDVGKPKRPNYLPLELCSLVSLQRYTKALSSMQRASLVEKSRQKPQDRMRTLTDALRSY 422 (832)
Q Consensus 344 ~eYf~~~Y~i~L~~~p-~lP~v~vg~~~k~~~lP~Elc~i~~~Q~~~~~l~~~q~~~mik~~~~~P~~R~~~i~~~~~~l 422 (832)
+|||+++||++|+| | ++|||++|+.++++|||||||.|+|+|+++++|++.|+++||++|+.+|++|.+.|.++++.+
T Consensus 344 ~dYfk~~Yni~l~~-p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~~~~~ 422 (900)
T PLN03202 344 YDYFVKHRGIELRY-SGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDALKSS 422 (900)
T ss_pred HHHHHHHcCccccC-CCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 99999999999999 6 999999999888999999999999999999999999999999999999999999999999998
Q ss_pred cCCCcccccceeeEEcccceeeeeEEecCCeeeeCCccccCCCCCccccCCceeecccccceEEEEEeCCCccHHHHHHH
Q 003304 423 SYDEDPVLAACGISIGKQLTQVDGRILEIPKLKVGKSEDCIPRNGRWNFNNKRFLEATRIDRWIVVNFSARCDTSHISRE 502 (832)
Q Consensus 423 ~~~~~~~l~~~Gi~i~~~~~~v~~rvL~~P~i~~g~~~~~~~~~g~W~~~~~~f~~p~~l~~W~vv~~~~~~~~~~f~~~ 502 (832)
+++.+++|++|||+|+.+|++|+||+|+||+|.||+++.+.|.+|+||+++++|++|+.+++|+|++|....++.+|++.
T Consensus 423 ~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~~~~~~f~~~ 502 (900)
T PLN03202 423 NYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGEDFFPRNGRWNFNNKKLVEPTKIERWAVVNFSARCDIRHLVRD 502 (900)
T ss_pred CCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCcccCCCCCceecCCCEecCCCccceEEEEEecCchhHHHHHHH
Confidence 88889999999999999999999999999999999877677889999999999999999999999988766689999999
Q ss_pred HHHHhhhcCcccCCCceeeeccccccCCChhHHHHHHHHHHHhhCCCCCeEEEEEccCCCCCcchHHHHHHhhcccCcee
Q 003304 503 LINCGRNKGIHIERPFTLIEEDQQTRRGNPVVRVERMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIAT 582 (832)
Q Consensus 503 L~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~iK~~~~~~~gI~T 582 (832)
|.+.|+.+||.+.+|..+....++.......++++.+++.+++.....++|+|||+|+++++++|+.||++||+++||+|
T Consensus 503 l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~qlv~vIlp~~~~~~~Y~~IK~~~~~~~gV~T 582 (900)
T PLN03202 503 LIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLPGPPQFLLCILPERKNSDIYGPWKKKNLSEFGIVT 582 (900)
T ss_pred HHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhccCCCeEEEEEEcCCCCcchHHHHHHHHhhccCccc
Confidence 99999999999998865433322222223346789999999887666789999999974478899999999999999999
Q ss_pred eeeccccCChhHHHHHHHHHHhccCCcccccccccccCCCCccCCCeEEEEEEeeeCCCCCCCCCeEEEEEEeecCCccc
Q 003304 583 QCISPTKINDQYLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLIS 662 (832)
Q Consensus 583 Qcv~~~~~~~q~~~ni~lKiN~KlGG~n~~~~~~~~~~~p~~~~~~tMiiG~DV~H~~~~~~~~pSi~avVaS~d~~~~~ 662 (832)
|||..++.++|+++|||||||+||||+||.|+++.+..+|++.+.+|||||+||+||++++.+.|||||+|||+|++.++
T Consensus 583 Qcv~~~~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~pSiaa~VaS~d~~~~~ 662 (900)
T PLN03202 583 QCIAPTRVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVPSIAAVVSSRQWPLIS 662 (900)
T ss_pred EEeCccccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCCCceEEEEeccCccccc
Confidence 99987778999999999999999999999997654456888888899999999999998765579999999999976789
Q ss_pred eeeEEEEEccCCceeeccccccccCCChHHHHHHHHHHHHHHhCCCCCcEEEEEecCCCchhHHHHHHHHHHHHHHHHHH
Q 003304 663 RYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQH 742 (832)
Q Consensus 663 ~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~~~~~~P~~IIiyRDGVsegq~~~V~~~Ev~~i~~a~~~ 742 (832)
+|++.+++|.+++|++++|..+...+.+++|+.++|+.||+++++.+|++|||||||||||||.+|+++|+++|++||++
T Consensus 663 ~y~s~~~~Q~~~~E~i~~l~~~~~~~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGVseGQ~~~Vl~~Ev~~i~~a~~~ 742 (900)
T PLN03202 663 RYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNIELDQIIEACKF 742 (900)
T ss_pred ceeeEEEecCCCceeeeehhccccccchHHHHHHHHHHHHHHcCCCCCceeEEEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986544334567899999999999877899999999999999999999999999999999999
Q ss_pred hCCCCCCcEEEEEEeeccceeeecCCCCCCCCCceeeecccccCCcceEEEeeecCCccccCCCeEEEEecCCCCChHHH
Q 003304 743 LGEADIPKFTVIVAQKNHHTKLFQASGPENVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDL 822 (832)
Q Consensus 743 ~~~~~~pkit~Ivv~Krh~~Rff~~~~~~N~~pGTvVD~~It~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~d~~~~~~d~l 822 (832)
++++|+|+||||||+||||+|||+.+..+||+||||||++||+|..||||||||.++|||||||||+||+||+++++|+|
T Consensus 743 ~~~~~~Pkit~Ivv~Krh~tRff~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~l 822 (900)
T PLN03202 743 LDESWSPKFTVIVAQKNHHTKFFQAGSPDNVPPGTVVDNKICHPRNNDFYMCAHAGMIGTTRPTHYHVLLDEIGFSADDL 822 (900)
T ss_pred hCCCCCCcEEEEEEeccceeeeeccCCCCCCCCceEeccccccCCcceEEEecccccccCCcCceEEEEECCCCCCHHHH
Confidence 98889999999999999999999987779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccC
Q 003304 823 QNLIHSLSYV 832 (832)
Q Consensus 823 q~lt~~LCy~ 832 (832)
|+|||+|||+
T Consensus 823 q~lty~lc~~ 832 (900)
T PLN03202 823 QELVHSLSYV 832 (900)
T ss_pred HHHHHHHhhh
Confidence 9999999996
|
|
| >KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily | Back alignment and domain information |
|---|
| >cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes | Back alignment and domain information |
|---|
| >cd02826 Piwi-like Piwi-like: PIWI domain | Back alignment and domain information |
|---|
| >PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] | Back alignment and domain information |
|---|
| >cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria | Back alignment and domain information |
|---|
| >PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily | Back alignment and domain information |
|---|
| >cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily | Back alignment and domain information |
|---|
| >PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO | Back alignment and domain information |
|---|
| >cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily | Back alignment and domain information |
|---|
| >cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily | Back alignment and domain information |
|---|
| >COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products [] | Back alignment and domain information |
|---|
| >TIGR00194 uvrC excinuclease ABC, C subunit | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 832 | ||||
| 4f3t_A | 861 | Human Argonaute-2 - Mir-20a Complex Length = 861 | 1e-105 | ||
| 4ei1_A | 859 | Crystal Structure Of Human Argonaute2 Length = 859 | 1e-104 | ||
| 2yhb_A | 437 | Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi | 1e-28 | ||
| 4f1n_A | 1046 | Crystal Structure Of Kluyveromyces Polysporus Argon | 2e-21 | ||
| 1r4k_A | 169 | Solution Structure Of The Drosophila Argonaute 1 Pa | 4e-16 | ||
| 2yha_A | 388 | Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi | 7e-14 | ||
| 1si2_A | 149 | Crystal Structure Of The Paz Domain Of Human Eif2c1 | 8e-14 | ||
| 1si3_A | 149 | Crystal Structure Of The Paz Domain Of Human Eif2c1 | 4e-13 | ||
| 4g0o_A | 139 | Crystal Structure Of Arabidopsis Thaliana Ago5 Mid | 2e-09 | ||
| 3vnb_A | 155 | Structural Insights Into Small Rna Sorting And Mrna | 3e-09 | ||
| 3luc_A | 138 | Crystal Structure Of Mid Domain From Hago2 Length = | 7e-06 | ||
| 3vna_A | 154 | Structural Insights Into Small Rna Sorting And Mrna | 9e-06 | ||
| 4g0p_A | 147 | Crystal Structure Of Arabidopsis Thaliana Ago1 Mid | 9e-06 | ||
| 4g0m_A | 150 | Crystal Structure Of Arabidopsis Thaliana Ago2 Mid | 4e-05 | ||
| 4g0x_A | 147 | Crystal Structure Of Arabidopsis Thaliana Ago1 Mid | 2e-04 | ||
| 3luk_A | 138 | Crystal Structure Of Mid Domain From Hago2 Length = | 4e-04 |
| >pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 | Back alignment and structure |
|
| >pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 | Back alignment and structure |
| >pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 437 | Back alignment and structure |
| >pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With A Guide Rna Length = 1046 | Back alignment and structure |
| >pdb|1R4K|A Chain A, Solution Structure Of The Drosophila Argonaute 1 Paz Domain Length = 169 | Back alignment and structure |
| >pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 388 | Back alignment and structure |
| >pdb|1SI2|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Of Deoxynucleotide Overhang Length = 149 | Back alignment and structure |
| >pdb|1SI3|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Length = 149 | Back alignment and structure |
| >pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain Length = 139 | Back alignment and structure |
| >pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Domains Length = 155 | Back alignment and structure |
| >pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 | Back alignment and structure |
| >pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Mid Domains Length = 154 | Back alignment and structure |
| >pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain In Complex With Ump Length = 147 | Back alignment and structure |
| >pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain Length = 150 | Back alignment and structure |
| >pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain Length = 147 | Back alignment and structure |
| >pdb|3LUK|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 | Back alignment and structure |
|---|
Score = 635 bits (1639), Expect = 0.0
Identities = 252/850 (29%), Positives = 401/850 (47%), Gaps = 87/850 (10%)
Query: 10 PPLPPSPPLMPPNVKPEHVDLPRHSIMSRRGVGNCGRRISLLTNHFKVSVNTTDAVFYHY 69
+ P + P P + R G GR I L N F++ + YHY
Sbjct: 2 AMYSGAGPALAPPAPPPPIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIP--KIDIYHY 59
Query: 70 TVTISGEDKRIAKGKGIGRKVVDKLYQTYSAE-LAGKRFAYDGEKSLYTVGPLPQNKFEF 128
+ I E + + R++V+ + Q + + ++ +DG K+LYT PLP + +
Sbjct: 60 ELDIKPEKCP----RRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKV 115
Query: 129 TVVLEESRAKQQNGSPRGRDSPIGPGKRSKHSFQSKTFMVEISFATKIPLRSIALALKGN 188
+ + + + F V I + + + L+++ AL G
Sbjct: 116 ELEVTLPGEGK-----------------------DRIFKVSIKWVSCVSLQALHDALSGR 152
Query: 189 EVDNTQDALRVLDIVLRQQAANWGCLLVRQSFFHDDSRNLVDVGGGVSGIRGFHSSFRPT 248
+ ++ LD+V+R + V +SFF +GGG GFH S RP+
Sbjct: 153 LPSVPFETIQALDVVMRHLP-SMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPS 211
Query: 249 QGGLSLNMDVSTTMILKPGPVIDFLIANQNVREPRFI-------DWTKAKKMLRNLRVKP 301
+ LN+DVS T K PVI+F+ + + K K ++ L+V+
Sbjct: 212 LWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEI 271
Query: 302 RHR---NMEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGETLEITVYDYFTQHCRIELTYS 358
H ++++ ++ +P + Q FP++ +S + E TV YF ++ L Y
Sbjct: 272 THCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTV------ECTVAQYFKDRHKLVLRY- 324
Query: 359 AYLPCLDVGKPKRPNYLPLELCSLVSLQRYTKALSSMQRASLVEKSRQKPQDRMRTLTDA 418
+LPCL VG+ ++ YLPLE+C++V+ QR K L+ Q ++++ + + DR ++
Sbjct: 325 PHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKL 384
Query: 419 LRSYSYDEDPVLAACGISIGKQLTQVDGRILEIPKLKVGKSE--DCIPRNGRWNFNNKRF 476
+RS S++ DP + GI + ++T V GR+L+ P + G P G W+ NK+F
Sbjct: 385 MRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQF 444
Query: 477 LEATRIDRWIVVNFSARCDTSH-----ISRELINCGRNKGIHIERPFTLIEEDQQTRRGN 531
I W + F+ + + + +L R+ G+ I+ +
Sbjct: 445 HTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYA------Q 498
Query: 532 PVVRVERMFELITEKLPGPPQFILCVLPERKNSDIYGPWKKKSLSDFGIATQCISP---T 588
VE MF + Q ++ +LP + +Y K+ + G+ATQC+
Sbjct: 499 GADSVEPMFRHLKNTYA-GLQLVVVILPGKT--PVYAEVKRVGDTVLGMATQCVQMKNVQ 555
Query: 589 KINDQYLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPS 648
+ Q L+N+ LKIN KLGG+N++L P + P + LG DV+H G PS
Sbjct: 556 RTTPQTLSNLCLKINVKLGGVNNIL---LPQGRPPVFQQPVIFLGADVTHPPAGDGKKPS 612
Query: 649 VAAVVGSQSWPLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQR 708
+AAVVGS +RY A VR Q + E+I L + RELL+ FY++++
Sbjct: 613 IAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDLAAMV---------RELLIQFYKSTR-F 661
Query: 709 KPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQAS 768
KP +II +RDGVSE QF QVL+ EL I +A L + P T IV QK HHT+LF
Sbjct: 662 KPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTD 721
Query: 769 GPE------NVPPGTVVDTRIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDL 822
E N+P GT VDT+I HP +DFY+C+HAG+ GTSRP+HYHVL D+ FS D+L
Sbjct: 722 KNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDEL 781
Query: 823 QNLIHSLSYV 832
Q L + L +
Sbjct: 782 QILTYQLCHT 791
|
| >4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 | Back alignment and structure |
|---|
| >3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685 | Back alignment and structure |
|---|
| >2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Length = 437 | Back alignment and structure |
|---|
| >1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Length = 706 | Back alignment and structure |
|---|
| >2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Length = 388 | Back alignment and structure |
|---|
| >1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Length = 771 | Back alignment and structure |
|---|
| >2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Length = 427 | Back alignment and structure |
|---|
| >4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* Length = 147 | Back alignment and structure |
|---|
| >4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Length = 150 | Back alignment and structure |
|---|
| >4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Length = 139 | Back alignment and structure |
|---|
| >3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Length = 138 | Back alignment and structure |
|---|
| >3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} PDB: 1t2r_A 1t2s_A Length = 124 | Back alignment and structure |
|---|
| >2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Length = 150 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Length = 148 | Back alignment and structure |
|---|
| >3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Length = 124 | Back alignment and structure |
|---|
| >1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 Length = 509 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 832 | |||
| 4f3t_A | 861 | Protein argonaute-2; hydrolase/gene regulation, RN | 100.0 | |
| 4f1n_A | 1046 | Kpago; argonaute, RNAI, RNAse H, RNA binding prote | 100.0 | |
| 1yvu_A | 706 | Hypothetical protein AQ_1447; RNAse H fold, RNA bi | 100.0 | |
| 1u04_A | 771 | Argonaute, hypothetical protein PF0537; RNAI, sile | 100.0 | |
| 2yhb_A | 437 | QDE-2, post-transcriptional gene silencing protein | 100.0 | |
| 3ho1_A | 685 | Argonaute; argonaute, protein-DNA-RNA complex, nuc | 100.0 | |
| 2yha_A | 388 | Post-transcriptional gene silencing protein QDE-2; | 100.0 | |
| 2w42_A | 427 | PIWI, putative uncharacterized protein; RNAI, RISC | 100.0 | |
| 1vyn_A | 143 | Argonaute2; nucleic acid binding, RNA interference | 99.93 | |
| 4g0o_A | 139 | Protein argonaute 5; MID domain, small RNA 5' nucl | 99.92 | |
| 4g0x_A | 147 | Protein argonaute 1; MID domain, small RNA 5' nucl | 99.91 | |
| 4g0m_A | 150 | Protein argonaute 2; MID domain, small RNA 5' nucl | 99.9 | |
| 3luc_A | 138 | Protein argonaute-2; MID domain, ribonucleoprotein | 99.9 | |
| 2xfm_A | 150 | MIWI, PIWI-like protein 1; RNA-protein complex, di | 99.89 | |
| 3mj0_A | 124 | Protein argonaute-2; argonaut, PAZ domain, 3'-END | 99.88 | |
| 3qir_A | 148 | PIWI-like protein 2; structural genomics consortiu | 99.87 | |
| 3o7v_X | 124 | PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, | 99.82 | |
| 1r6z_P | 509 | Chimera of maltose-binding periplasmic protein AN | 99.79 | |
| 2qvw_A | 756 | GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral | 98.6 | |
| 2nrr_A | 159 | Uvrabc system protein C; UVRC, endonuclase, NER, h | 82.58 |
| >4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-155 Score=1400.30 Aligned_cols=742 Identities=34% Similarity=0.585 Sum_probs=641.4
Q ss_pred CCcccccCCCCCCCCCCEEEEEEEEEEEEeccCCeEEEEEEEEeecCCcccccCchhhHHHHHHHHHHhhh-hhcCCceE
Q 003304 30 LPRHSIMSRRGVGNCGRRISLLTNHFKVSVNTTDAVFYHYTVTISGEDKRIAKGKGIGRKVVDKLYQTYSA-ELAGKRFA 108 (832)
Q Consensus 30 ~~~~~~~~RP~~Gt~G~~i~l~tN~f~i~~~~~~~~~y~Y~V~i~~~~~~~~~~k~~~r~i~~~l~~~~~~-~~~~~~~~ 108 (832)
.....+++|||+||.|++|.|+||||+|+++ +..+|||||+|+| +.++++++|++++++++++.. .|++..+|
T Consensus 22 ~~~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~--~~~ly~Y~V~i~p----~~~~~~~~r~i~~~l~~~~~~~~~~~~~~a 95 (861)
T 4f3t_A 22 GYAFKPPPRPDFGTSGRTIKLQANFFEMDIP--KIDIYHYELDIKP----EKCPRRVNREIVEHMVQHFKTQIFGDRKPV 95 (861)
T ss_dssp ---CCCCBCCCCCCCSEEEEEEESEEEEECC--SCEEEEEEEEEES----CSCCHHHHHHHHHHHHHHSCCCCCTTCCCE
T ss_pred cccccCCCCCCCCCCCcEEEEEeeeEEEECC--CCceeeeeEEeCC----CcCcHHHHHHHHHHHHHHhhhhhhcCceEE
Confidence 4466788999999999999999999999874 4679999999965 444567889999998887643 35566789
Q ss_pred EeCCcceeecCCCCCCceEEEEEeccchhcccCCCCCCCCCCCCCCCCCCCCCCCceEEEEEEEecccChHHHHHHHcCC
Q 003304 109 YDGEKSLYTVGPLPQNKFEFTVVLEESRAKQQNGSPRGRDSPIGPGKRSKHSFQSKTFMVEISFATKIPLRSIALALKGN 188 (832)
Q Consensus 109 yDG~~~lyS~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~l~~l~~~l~g~ 188 (832)
|||+++|||+++||.+..++++.+.... ..+.+.|+|+|++++++++++|.+|++|.
T Consensus 96 fDG~~~l~s~~~L~~~~~~~~~~v~~~~-----------------------~~~~~~~~V~I~~~~~i~l~~L~~~l~g~ 152 (861)
T 4f3t_A 96 FDGRKNLYTAMPLPIGRDKVELEVTLPG-----------------------EGKDRIFKVSIKWVSCVSLQALHDALSGR 152 (861)
T ss_dssp ECSSSEEEESSCCSCSSCEEEEECCC------------------------------CEEEEEEEEEEEEHHHHHHHHHTC
T ss_pred EcCcceEEECCcCCCCCcceEEEEecCC-----------------------CCCCcEEEEEEEEeeecCHHHHHHHhcCC
Confidence 9999999999999976544433322110 11367899999999999999999999998
Q ss_pred CCCchhHHHHHHHHHHhccccccCceecccccccCCCCCeeecCCCEEeeecceEEEEeeCCeeeEeeeeeeeeeecccc
Q 003304 189 EVDNTQDALRVLDIVLRQQAANWGCLLVRQSFFHDDSRNLVDVGGGVSGIRGFHSSFRPTQGGLSLNMDVSTTMILKPGP 268 (832)
Q Consensus 189 ~~~~~~~~iq~lniilr~~~~~~~~~~~g~~ff~~~~~~~~~l~~g~e~~~Gf~~Svr~~~~~l~LniDv~~~~F~~~~~ 268 (832)
....+.++||+||+|||+.+. ..+..+||+||++..+...++|+|+|+|+||++|||+++++|+||+|+++++|++++|
T Consensus 153 ~~~~~~~~iq~Lniilr~~~~-~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~ 231 (861)
T 4f3t_A 153 LPSVPFETIQALDVVMRHLPS-MRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQP 231 (861)
T ss_dssp SSSCCHHHHHHHHHHHHHHHH-HHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEE
T ss_pred CCCCcHHHHHHHHHHHHhhcc-ccccccCCCccCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCCc
Confidence 877789999999999999654 5688999999987655446789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCC-------CcccHHHHHhhhcCcEEEeec---cCceEEEeecCCCCCCcccccccccCCCCCCCCCc
Q 003304 269 VIDFLIANQNVREP-------RFIDWTKAKKMLRNLRVKPRH---RNMEFKIVGLSEKPCNQQFFPMKVKSTEGTNEGET 338 (832)
Q Consensus 269 l~d~l~~~~~~~~~-------~~~~~~~i~~~Lkgl~V~~~~---~~r~~~I~~l~~~~a~~~~F~~~~~~~~g~~~~~g 338 (832)
|+|+|.+..+.++. .+.++.+++++|+|++|.++| ++|+|+|.||++.++++.+|.++..+ | ++
T Consensus 232 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~--g----~~ 305 (861)
T 4f3t_A 232 VIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQES--G----QT 305 (861)
T ss_dssp HHHHHHHHHTCSSCC---CCCCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSS--S----CE
T ss_pred HHHHHHHHhcccchhhhccccCHHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCC--C----Cc
Confidence 99999886544322 122467899999999999999 46899999999989999999764321 2 13
Q ss_pred eeeeHHHHHHHhcCCccccCCCCcEEecCCCCCcccccccceEEcCCccccccCCHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003304 339 LEITVYDYFTQHCRIELTYSAYLPCLDVGKPKRPNYLPLELCSLVSLQRYTKALSSMQRASLVEKSRQKPQDRMRTLTDA 418 (832)
Q Consensus 339 ~~isV~eYf~~~Y~i~L~~~p~lP~v~vg~~~k~~~lP~Elc~i~~~Q~~~~~l~~~q~~~mik~~~~~P~~R~~~i~~~ 418 (832)
.+|||+|||+++|||+|+| |+||||++|++++++|||||||.|+|||++.++|+++|+++||++|+.+|.+|.+.|.++
T Consensus 306 ~~iSV~dYFk~kYni~L~~-p~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~~~ 384 (861)
T 4f3t_A 306 VECTVAQYFKDRHKLVLRY-PHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKL 384 (861)
T ss_dssp EEEEHHHHHHHHHCCCCSC-TTSEEEEESCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred eeEEHHHHHHHhcCcccCC-CCCceEEecCCCCCccccceeEEeeCCccccccCCHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5899999999999999999 999999999888899999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCcccccceeeEEcccceeeeeEEecCCeeeeCCcc--ccCCCCCccccCCceeecccccceEEEEEeCCC---
Q 003304 419 LRSYSYDEDPVLAACGISIGKQLTQVDGRILEIPKLKVGKSE--DCIPRNGRWNFNNKRFLEATRIDRWIVVNFSAR--- 493 (832)
Q Consensus 419 ~~~l~~~~~~~l~~~Gi~i~~~~~~v~~rvL~~P~i~~g~~~--~~~~~~g~W~~~~~~f~~p~~l~~W~vv~~~~~--- 493 (832)
++.++++.+++|++|||+|+++|++|+||+||||+|.|+++. ...+.+|+|++++++|++|+++++|++++++..
T Consensus 385 ~~~l~~~~~~~l~~fGi~i~~~~~~v~gRvL~~P~I~y~~~~~~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~ 464 (861)
T 4f3t_A 385 MRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQC 464 (861)
T ss_dssp HHHHCGGGCHHHHHTTCEECSSCEEEEEEECCCCCEECCSSSCCEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTTTS
T ss_pred HHHhcCCCchHHHHCCCEEeCCeeEEEEEEecCceEEecCCcccccCCCCCceeccCCEEccCcccceeEEEEecCcccc
Confidence 999888888999999999999999999999999999998753 246789999999999999999999999998642
Q ss_pred --ccHHHHHHHHHHHhhhcCcccCC-CceeeeccccccCCChhHHHHHHHHHHHhhCCCCCeEEEEEccCCCCCcchHHH
Q 003304 494 --CDTSHISRELINCGRNKGIHIER-PFTLIEEDQQTRRGNPVVRVERMFELITEKLPGPPQFILCVLPERKNSDIYGPW 570 (832)
Q Consensus 494 --~~~~~f~~~L~~~~~~~G~~i~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvIlp~~~~~~~Y~~i 570 (832)
..++.|++.|.+.|+.+||.+.. |....... ..+.++.+++.+++.. .+++|||||+|+ + ++.|+.|
T Consensus 465 ~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~~-------~~~~~~~~~~~l~~~~-~~~qlvl~Ilp~-~-~~~Y~~I 534 (861)
T 4f3t_A 465 TEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQ-------GADSVEPMFRHLKNTY-AGLQLVVVILPG-K-TPVYAEV 534 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCBCSCCSEEEECC-------SSSSHHHHHHHHHHHS-TTCCEEEEEESS-S-CTHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhCCcccCCCCeEEEecC-------chHHHHHHHHHHHhhc-CCCcEEEEEeCC-C-ccHHHHH
Confidence 14899999999999999999975 54332211 1246788888888754 358999999997 4 6799999
Q ss_pred HHHhhcccCceeeeeccc---cCChhHHHHHHHHHHhccCCcccccccccccCCCCccCCCeEEEEEEeeeCCCCCCCCC
Q 003304 571 KKKSLSDFGIATQCISPT---KINDQYLTNVLLKINSKLGGINSLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIP 647 (832)
Q Consensus 571 K~~~~~~~gI~TQcv~~~---~~~~q~~~ni~lKiN~KlGG~n~~~~~~~~~~~p~~~~~~tMiiG~DV~H~~~~~~~~p 647 (832)
|++||++.||+||||+.+ +.++|++.||+||||+||||+||.+.+. ..|.+...+|||||+||+||+++....|
T Consensus 535 K~~~~~~~gI~TQcv~~~~~~k~~~q~~~ni~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~~p 611 (861)
T 4f3t_A 535 KRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGKKP 611 (861)
T ss_dssp HHHHHHTSCCEEEEEETHHHHSCCHHHHHHHHHHHHHHTTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----CCC
T ss_pred HHHhcccCCcceEEEEecccccccHHHHHHHHHHHHHhcCCcceecccc---ccccccCCceEEEEEEecccCCCCCCCc
Confidence 999999999999999975 4579999999999999999999988642 2344556899999999999998765689
Q ss_pred eEEEEEEeecCCccceeeEEEEEccCCceeeccccccccCCChHHHHHHHHHHHHHHhCCCCCcEEEEEecCCCchhHHH
Q 003304 648 SVAAVVGSQSWPLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQ 727 (832)
Q Consensus 648 Si~avVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~~~~~~P~~IIiyRDGVsegq~~~ 727 (832)
||||||||+|+ .+++|.+.+++|.+++|+|++|. +|++++|.+|++.+ +.+|++|||||||||||||++
T Consensus 612 Siaa~vaS~d~-~~~~y~~~~~~Q~~~~E~i~~l~---------~~~~~~L~~~~~~~-~~~P~~IiiyRDGVsegq~~~ 680 (861)
T 4f3t_A 612 SIAAVVGSMDA-HPNRYCATVRVQQHRQEIIQDLA---------AMVRELLIQFYKST-RFKPTRIIFYRDGVSEGQFQQ 680 (861)
T ss_dssp EEEEEEEECSS-SSCCEEEEEEEESTTCCSCTTHH---------HHHHHHHHHHHHHH-SCCCSEEEEEEESCCGGGHHH
T ss_pred eEEEEEEEcCC-CcceEEEEEEEcCCCccHHHHHH---------HHHHHHHHHHHHHh-CCCCceEEEEecCCChHHHHH
Confidence 99999999997 79999999999999999999864 69999999998875 599999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEEeeccceeeecCC------CCCCCCCceeeecccccCCcceEEEeeecCCcc
Q 003304 728 VLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQAS------GPENVPPGTVVDTRIVHPRNYDFYMCAHAGMIG 801 (832)
Q Consensus 728 V~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~~~------~~~N~~pGTvVD~~It~p~~~dFyL~Sh~~~qG 801 (832)
|+++|+++|++||.+++.+|+|+||||||+||||+|||+.+ ..+||+||||||++||+|..||||||||+++||
T Consensus 681 v~~~Ev~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~~~~~~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qG 760 (861)
T 4f3t_A 681 VLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQG 760 (861)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCCEEEEEEEECCSCCCEEESSGGGCBTTTTBCCTTEEECSSSSCSSBCEEEEECSCCCSS
T ss_pred HHHHHHHHHHHHHHHhccCCCCcEEEEEEEccccceeeecCCcccccccCCCCCceeccCccccCCCCEEEEEEEecccc
Confidence 99999999999999999899999999999999999999964 247999999999999999999999999999999
Q ss_pred ccCCCeEEEEecCCCCChHHHHHHHHhcccC
Q 003304 802 TSRPAHYHVLLDEIGFSPDDLQNLIHSLSYV 832 (832)
Q Consensus 802 TarPt~Y~Vl~d~~~~~~d~lq~lt~~LCy~ 832 (832)
|||||||+||+||+++++|+||+|||+|||+
T Consensus 761 TarPthY~Vl~d~~~~~~d~lq~lty~Lc~~ 791 (861)
T 4f3t_A 761 TSRPSHYHVLWDDNRFSSDELQILTYQLCHT 791 (861)
T ss_dssp CCCCEEEEEEEETTCCCHHHHHHHHHHHTTC
T ss_pred cccCceEEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999996
|
| >4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} | Back alignment and structure |
|---|
| >1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A | Back alignment and structure |
|---|
| >1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A | Back alignment and structure |
|---|
| >2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} | Back alignment and structure |
|---|
| >3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A | Back alignment and structure |
|---|
| >2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A | Back alignment and structure |
|---|
| >2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A | Back alignment and structure |
|---|
| >4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A | Back alignment and structure |
|---|
| >4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* | Back alignment and structure |
|---|
| >2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} | Back alignment and structure |
|---|
| >3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A | Back alignment and structure |
|---|
| >3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A | Back alignment and structure |
|---|
| >3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* | Back alignment and structure |
|---|
| >1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 | Back alignment and structure |
|---|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A | Back alignment and structure |
|---|
| >2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 832 | ||||
| d1yvua2 | 392 | c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 | 2e-68 | |
| d1w9ha1 | 316 | c.55.3.10 (A:93-408) Hypothetical protein AF1318 { | 1e-58 | |
| d1u04a2 | 447 | c.55.3.10 (A:324-770) Argonaute homologue PF0537 { | 2e-51 | |
| d1si2a_ | 126 | b.34.14.1 (A:) Eukaryotic translation initiation f | 8e-31 | |
| d1t2sa_ | 123 | b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila | 5e-22 |
| >d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: PIWI domain domain: Argonaute homologue Aq 1447 species: Aquifex aeolicus [TaxId: 63363]
Score = 229 bits (586), Expect = 2e-68
Identities = 55/342 (16%), Positives = 109/342 (31%), Gaps = 60/342 (17%)
Query: 501 RELINCGRNKGIHIERPFTLIEEDQQTRRGNPVVRVERMFELITEKLPGPPQFILCVLPE 560
+ELIN +NKGI ++ + Q R ++ + ++ L E
Sbjct: 60 KELINFLKNKGIKLKIKGKSLILAQT--REEAKEKLIPVI-----NKIKDVDLVIVFLEE 112
Query: 561 RKNSD------IYGPWKKKSLSDFGIATQCISPTKINDQ----YLTNVLLKINSKLGGIN 610
D +Y K++ L I +Q I + ++ L NV ++ +K G I
Sbjct: 113 YPKVDPYKSFLLYDFVKRELL-KKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIP 171
Query: 611 SLLALEQSSLIPLIKDTPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLISRYRAAVRT 670
L I+ +G+D+S + + +VA S + RY
Sbjct: 172 YKL--------KEIEGKVDAFVGIDISRITRDGKTVNAVAFTKIFNSKGELVRYYLTSYP 223
Query: 671 QSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSKQRKPKQIIIFRDGVSESQFNQVLN 730
+ ++ + + +K +I++ RDG +
Sbjct: 224 AFGE-KLTEKA-------------IGDVFSLLEKLGFKKGSKIVVHRDGR-------LYR 262
Query: 731 IELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASGPENVPPGTVVDTRIVHPRNYD 790
E+ K + G ++ K ++ + F E G +
Sbjct: 263 DEVAAFKKYGELYG----YSLELLEIIKRNNPRFFS---NEKFIKGYFYK----LSEDSV 311
Query: 791 FYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYV 832
+ GT +P + E+ + L + I SL+ +
Sbjct: 312 ILATYNQVYEGTHQPIKVRKVYGEL--PVEVLCSQILSLTLM 351
|
| >d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 | Back information, alignment and structure |
|---|
| >d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 | Back information, alignment and structure |
|---|
| >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
| >d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 123 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 832 | |||
| d1yvua2 | 392 | Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax | 100.0 | |
| d1u04a2 | 447 | Argonaute homologue PF0537 {Pyrococcus furiosus [T | 100.0 | |
| d1w9ha1 | 316 | Hypothetical protein AF1318 {Archaeoglobus fulgidu | 100.0 | |
| d1u04a1 | 322 | Argonaute homologue PF0537 {Pyrococcus furiosus [T | 100.0 | |
| d1si2a_ | 126 | Eukaryotic translation initiation factor 2C 1, EIF | 99.9 | |
| d1t2sa_ | 123 | Argonaute 2 {Fruit fly (Drosophila melanogaster) [ | 99.88 |
| >d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: PIWI domain domain: Argonaute homologue Aq 1447 species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=1.4e-49 Score=438.42 Aligned_cols=300 Identities=18% Similarity=0.144 Sum_probs=225.1
Q ss_pred cceEEEEEeC---CCc-cHHHHHHHHHHHhhhcCcccCC-CceeeeccccccCCChhHHHHHHHHHHHhhCCCCCeEEEE
Q 003304 482 IDRWIVVNFS---ARC-DTSHISRELINCGRNKGIHIER-PFTLIEEDQQTRRGNPVVRVERMFELITEKLPGPPQFILC 556 (832)
Q Consensus 482 l~~W~vv~~~---~~~-~~~~f~~~L~~~~~~~G~~i~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv 556 (832)
+-+|.++.+. ..+ ..++|++.|.+.|+.+||++.. |..+..... .....+.+.+.+.+. .++++++|
T Consensus 37 ~~~~~~i~~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~l~~v 108 (392)
T d1yvua2 37 VLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQT------REEAKEKLIPVINKI--KDVDLVIV 108 (392)
T ss_dssp EEEEEEEEEEC-----CHHHHHHHHHHHHHHTTTCEEEEEEEEEEECSS------TTHHHHHHHHHHTTT--SSCSEEEE
T ss_pred cccceEEEEEEeehhhhHHHHHHHHHHHHHHhcCceecCCCcCeeecCC------ccchHHHHHHHHhhc--cCCCEEEE
Confidence 4466666533 222 5899999999999999999974 433333221 112223333444322 35789999
Q ss_pred EccCCCC------CcchHHHHHHhhcccCceeeeeccccC---Chh-HHHHHHHHHHhccCCcccccccccccCCCCccC
Q 003304 557 VLPERKN------SDIYGPWKKKSLSDFGIATQCISPTKI---NDQ-YLTNVLLKINSKLGGINSLLALEQSSLIPLIKD 626 (832)
Q Consensus 557 Ilp~~~~------~~~Y~~iK~~~~~~~gI~TQcv~~~~~---~~q-~~~ni~lKiN~KlGG~n~~~~~~~~~~~p~~~~ 626 (832)
|+|+.+. .++|+.||++| .+.||+||||..+++ +.+ ++.||++|||+||||+||.+.. .+ .
T Consensus 109 i~~~~~~~~~~~~~~~Y~~IK~~~-~~~gIptQ~i~~~tl~~~~~~~~~~NIalqinaKlGGipw~l~~-----~~---~ 179 (392)
T d1yvua2 109 FLEEYPKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKE-----IE---G 179 (392)
T ss_dssp EEC----------CHHHHHHHHHH-HHTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESC-----CT---T
T ss_pred EEcCCCCcccccchhHHHHHHHHH-hcCCcccEEEChhhccCCCchHHHHHHHHHHHHHhCCcceECCC-----CC---C
Confidence 9987332 25799999987 688999999998543 444 5789999999999999999842 22 3
Q ss_pred CCeEEEEEEeeeCCCCCCCCCeEEEEEEeecCCccceeeEEEEEccCCceeeccccccccCCChHHHHHHHHHHHHHHhC
Q 003304 627 TPTMILGMDVSHGSPGRSDIPSVAAVVGSQSWPLISRYRAAVRTQSSKVEMIDALYKPIANGNDDGIIRELLLDFYRTSK 706 (832)
Q Consensus 627 ~~tMiiG~DV~H~~~~~~~~pSi~avVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~l~~f~~~~~ 706 (832)
.+|||||+||+|++++.. .++++|++++.+......++.....|..++|++. +++.++|..|+ +++
T Consensus 180 ~~tmiIGiDv~h~~~~~~-~~~~v~~~~~~~~~g~~~~~~~~~~~~~~ee~~~------------~~~~~~l~~~~-~~~ 245 (392)
T d1yvua2 180 KVDAFVGIDISRITRDGK-TVNAVAFTKIFNSKGELVRYYLTSYPAFGEKLTE------------KAIGDVFSLLE-KLG 245 (392)
T ss_dssp CCSEEEEECEEECCCSSS-CCCEEEEEEEECTTSCEEEEEEEEECSCTTHHHH------------HHHHHHHHHHH-HTT
T ss_pred CCeEEEEEEEEecCCCCC-cccEEEEEEEEcCCCCEEEEEEEecCCccHHHHH------------HHHHHHHHHHH-Hhc
Confidence 689999999999987643 4555666655553223344445556666666544 47788888765 456
Q ss_pred CCCCcEEEEEecCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeeccceeeecCCCCCCCCCceeeecccccC
Q 003304 707 QRKPKQIIIFRDGVSESQFNQVLNIELEQIIKAYQHLGEADIPKFTVIVAQKNHHTKLFQASGPENVPPGTVVDTRIVHP 786 (832)
Q Consensus 707 ~~~P~~IIiyRDGVsegq~~~V~~~Ev~~i~~a~~~~~~~~~pkit~Ivv~Krh~~Rff~~~~~~N~~pGTvVD~~It~p 786 (832)
+.+|++|||||||+..+ +|+++|++||+++ .|+|++|+|+||||+|||+. +|+++||+|. .+
T Consensus 246 ~~~P~rIIi~RdG~~~~-------~El~~i~~a~~~~----~pki~~IvV~Krh~~Rff~~---~~~~~Gt~v~----~~ 307 (392)
T d1yvua2 246 FKKGSKIVVHRDGRLYR-------DEVAAFKKYGELY----GYSLELLEIIKRNNPRFFSN---EKFIKGYFYK----LS 307 (392)
T ss_dssp CCTTCEEEEEESSCCCH-------HHHHHHHHHHHHH----TCEEEEEEEECSSCCCEECS---CSCCTTEEEE----BS
T ss_pred CCCCceEEEEeCCCCcH-------HHHHHHHHHHHhc----CCcEEEEEEEecCCeeecCC---CCCCCCCEEe----CC
Confidence 79999999999998654 5999999999875 58999999999999999985 4788999985 57
Q ss_pred CcceEEEeeecCCccccCCCeEEEEecCCCCChHHHHHHHHhcccC
Q 003304 787 RNYDFYMCAHAGMIGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYV 832 (832)
Q Consensus 787 ~~~dFyL~Sh~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lt~~LCy~ 832 (832)
...+||++||.+.|||+||+||+|++||+ +.|+||++||.|||+
T Consensus 308 ~~~~~~~~s~~~~qGT~rP~~Y~vl~d~~--~~d~l~~lt~~Lc~l 351 (392)
T d1yvua2 308 EDSVILATYNQVYEGTHQPIKVRKVYGEL--PVEVLCSQILSLTLM 351 (392)
T ss_dssp SSEEEECCSCCCSTTCCCCEEEEEEECSS--CHHHHHHHHHHGGGG
T ss_pred CCeEEEEEcCCcCCCCCCCcEEEEECCCC--CHHHHHHHHHHHHhh
Confidence 88999999999999999999999999996 469999999999996
|
| >d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|