Citrus Sinensis ID: 003362

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820------

MDKDKSSKRSHDHHRDRDGEHRHRHRDRDDKHRDHHHHRSSDHKSSRRDERERSRDREKSIDERDFKREKSHDDRERDRDFKREKSHEERDSRRDRDRSREVKREEFDDGDDVASEVKKKRKARDESEERGEKKNARVLDEKREKKRKFEDNFVKEEEDDGGISGNANVSEIYLKQEVNGHDSTNAGGSANSNGAAVESITMASRTSPDTTMAAGDPPFPTKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSAAGKSGSLSLDALAKAKKALQMQKELSEKLKKIATLSKGSSSDGSGKVQGPAATASDAAAAAAAASVQPPTSSVPAFPGLANITNIEAVKRAQELAAKMGFRQDPEFAPIINCFPGQPPVDAAVPQKPTKAPVLRVDALGREIDEHGNVVNRTKPSNLSTLKVNINKQKKDAFQILKPELEVDPNVNPHFDPRMGINKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGAKERQAKQAQLAKAKGGTDINPNLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKITIYVEHPRPIEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKEEDEDEDETTDKPVNKCVLVWQGNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAVNFNDEI

cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccHHHHHHHHccccccccccHHHHHHcccccccccccccccHHHcccccccccccHHHHHHHHccccHHHHHHHcHHHHHHcHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcHHHHHHccccccccccccccccccccccccccccccccccEEcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHcccccEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccEEEEEEEEcccccccccccccccccccccEEEEEEEcccEEEEEEccHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEEcccccccccEEEEcccHHHHHHHHHHccccHHHHHHHHccccc

cccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccHHHHccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccHccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHccccccccccccccccccccccccHcccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHccccccccccccccccccccccEEEcccccEEcccccEEEcccccccccccccHcHHHHHHHHHcccccccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEccHHHcccccccccccccHccccccccccEEEEEcccccccccccccccccccEccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEHHHHHHHHcHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEEEEEEEccccccccEEEEEEcHHHccccEEEEEccccEEEEEEccHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEccccccccccEEEEcccHHHHHHHHHHcccHHHHHHHHcccccc

mdkdksskrshdhhrdrdgehrhrhrdrddkhrdhhhhrssdhkssrrderersrdreksiderdfkrekshddrerdrdfkreksheerdsrrdrdrsrevkreefddgdDVASEVKKKRKARDESEERGEKKNARVLDEKREKKRKFEDNFvkeeeddggisgnANVSEIYLKQevnghdstnaggsansngaAVESITmasrtspdttmaagdppfptkvssisttnenkgvsitrshevhgksstdgtssaagksgsLSLDALAKAKKALQMQKELSEKLKKIATlskgsssdgsgkvqgpaatASDAAAAAAAasvqpptssvpafpglanitnIEAVKRAQELAAKmgfrqdpefapiincfpgqppvdaavpqkptkapvlRVDALGReidehgnvvnrtkpsnlstLKVNINKQKKDAFQilkpelevdpnvnphfdprmginkskllrpkrmtfqfveegkwsKEAEILRVKSQFGEAGAKERQAKQAQLAKakggtdinpnLIEVAERVItkekpkdpipeiewwdapllltgsyadisddvtiedKLKREKITiyvehprpieppaepappppqplkltKKEQKKLRTQRRLAREKDRQEMIRqglieppkpkvkmSNLMKVLgseatqdptRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKerklfddpssveTIVSVYKindlshpktrfkvdvnahenrltgCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKavkeedededettdkpvnkCVLVWqgnvarpsfnrfFVHECMTEAAAKKVFADAGVAHYWDLAVNFNDEI

mdkdksskrshdhhrdrdgehrhrhrdrddkhrdhhhhrssdhkssrrderersrdreksiderdfkrekshddrerdrdfkreksheerdsrrdrdrsrevkreefddgddvasevkkkrkardeseergekknarvldekrekkrkfednfvkeeeddggisgnANVSEIYLKQEVNGHDSTNAGGSANSNGAAVESITMASRTSPDTTMAAGDPPFPTKVSSISTTNENKGvsitrshevhgksstdgtssaagksgSLSLDALAKAKKALQMQKELSEKLKKIatlskgsssdgsgkVQGPAATASDAAAAAAAASVQPPTSSVPAFPGLANITNIEAVKRAQELAAKMGFRQDPEFAPIINCFPGQPPVDAAVPQKPTKAPVLRVDALGreidehgnvvnrtkpsnlstlkvNINKQKKDAFQILKPELEVDPNVNPHFDPrmginkskllrpkRMTFQFveegkwskeaEILRVKSQFGEAGAKERQAKQAQLakakggtdinpnLIEVAERVitkekpkdpipeiewWDAPLLLTGSYADISDDVTIEDKLKREKITIYvehprpieppaepappppqplkltkkeqkklrtqrrlarekdrqemirqglieppkpkvkMSNLMKVLgseatqdptrLEKEIRSAAAereqahidrniarkltpaerrekkerklfddpssvetIVSVykindlshpktrFKVDVNAHENRLTGCAVICEGINVVvveggsksikrygKLMLRRIDWakavkeedededettdkpvnkcVLVWQGNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAVNFNDEI

MdkdksskrshdhhrdrdgehrhrhrdrddkhrdhhhhrssdhkssrrderersrdreksiderdFKREKSHddrerdrdfkreksheerdsrrdrdrsrevkreeFDDGDDVASEVKKKRKARDESEERGEKKNARVLDekrekkrkFEDNFVKEEEDDGGISGNANVSEIYLKQEVNGHDstnaggsansngaaVESITMASRTSPDTTMAAGDPPFPTKVSSISTTNENKGVSITRSHEVHgksstdgtssaagksgslsldalakakkalQMQKELSEKLKKIATLskgsssdgsgkVQGpaatasdaaaaaaaasvqpptssvpaFPGLANITNIEAVKRAQELAAKMGFRQDPEFAPIINCFPGQPPVDAAVPQKPTKAPVLRVDALGREIDEHGNVVNRTKPSNLSTLKVNINKQKKDAFQILKPELEVDPNVNPHFDPRMGINKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGakerqakqaqlakakGGTDINPNLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKITIYVEHprpieppaepappppqplkltkkeqkklrtqrRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKeedededettdKPVNKCVLVWQGNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAVNFNDEI

*******************************************************************************************************************************************************************************************************************************************************************************************************************************************PGLANITNIEAVKRAQELAAKMGFRQDPEFAPIINCFPG*****************LRVDAL*********************************FQIL*****************************RMTFQFVEEGKWS***EIL********************************NLIEVAERVITK****DPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKITIYV*************************************************************************************************************************VETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAV**************VNKCVLVWQGNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAVNF****

*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************VEEGKWS****************************************IEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKITIYVEHPRP**************LKL***********************************VKMSNLMKVLGSEATQDPTRLEKEIRSA***********************************SVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDW*******************NKCVLVWQGNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAVNFN***

*****************************************************************************************************************************************VLDEKREKKRKFEDNFVKEEEDDGGISGNANVSEIYLKQEVNGHDSTNAGGSANSNGAAVESITMASRTSPDTTMAAGDPPFPTKVSSISTTNENKGVSI**********************GSLSLDALAKAKKALQMQKELSEKLKKIAT*************************************SVPAFPGLANITNIEAVKRAQELAAKMGFRQDPEFAPIINCFPGQPPVDAAVPQKPTKAPVLRVDALGREIDEHGNVVNRTKPSNLSTLKVNINKQKKDAFQILKPELEVDPNVNPHFDPRMGINKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQF******************KGGTDINPNLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKITIYVEHPRPIEPPAEPAPPPPQPLKLT*******************QEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAV************KPVNKCVLVWQGNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAVNFNDEI

*********************************************************************************************************************************************************************************************************************************************************************LSLDALAKAKKALQMQKELSEKLKKIATLS*****************************************GLANITNIEAVKRAQELAAKMGFRQDPEFAPIINCFPGQPPVDAA**QKPTKAPVLRVDALGREIDEHGNVVNRTKPSNLSTLKVNINKQKKDAFQILK**L******N***DPRMGINKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGAKERQAKQAQLAKAKGGTDINPNLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKITIYVEHPRPIEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVK********TTDKPVNKCVLVWQGNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAVNFN***

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MDKDKSSKRSHDHHRDRDGEHRHRHRDRDDKHRDHHHHRSSDHKSSRRDERERSRDREKSIDERDFKREKSHDDRERDRDFKREKSHEERDSRRDRDRSREVKREEFDDGDDVASEVKKKRKARDESEERGEKKNARVxxxxxxxxxxxxxxxxxxxxxDGGISGNANVSEIYLKQEVNGHDSTNAGGSANSNGAAVESITMASRTSPDTTMAAGDPPFPTKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSAAGKSGSLSLDAxxxxxxxxxxxxxxxxxxxxxATLSKGSSSDGSGKVQGPAATASDAAAAAAAASVQPPTSSVPAFPGLANITNIEAVKRAQELAAKMGFRQDPEFAPIINCFPGQPPVDAAVPQKPTKAPVLRVDALGREIDEHGNVVNRTKPSNLSTLKVNINKQKKDAFQILKPELEVDPNVNPHFDPRMGINKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGAKERQAKQAQLAKAKGGTDINPNLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKITIYVEHPRPIEPPAEPAPPPPQPxxxxxxxxxxxxxxxxxxxxxxxQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKEEDEDEDETTDKPVNKCVLVWQGNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAVNFNDEI

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		826	2.2.26 [Sep-21-2011]
Q2KIA6		683	U4/U6 small nuclear ribon	yes	no	0.550	0.666	0.380	2e-70
Q5R5F1		683	U4/U6 small nuclear ribon	yes	no	0.496	0.600	0.403	2e-70
O43395		683	U4/U6 small nuclear ribon	yes	no	0.496	0.600	0.403	3e-70
Q922U1		683	U4/U6 small nuclear ribon	yes	no	0.496	0.600	0.405	3e-70
Q5ZJ85		684	U4/U6 small nuclear ribon	yes	no	0.501	0.605	0.396	6e-69
Q09856		542	Uncharacterized protein C	yes	no	0.474	0.723	0.340	2e-47
Q03338		469	U4/U6 small nuclear ribon	yes	no	0.340	0.599	0.273	2e-17

>sp\|Q2KIA6\|PRPF3_BOVIN U4/U6 small nuclear ribonucleoprotein Prp3 OS=Bos taurus GN=PRPF3 PE=2 SV=1	Back alignment and function desciption

 Score =  268 bits (684), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 199/523 (38%), Positives = 281/523 (53%), Gaps = 68/523 (13%)

Query: 314 AAAAAASVQPPTSSVPAFPGLANITNIEAVKRAQELAAKMGFRQDPEFAPIINCFPGQPP 373
           AA   AS+Q   +  P   G AN+  +  +         MG       AP        P 
Sbjct: 206 AAELQASIQAQLALKPGLIGNANMVGLANLH-------AMGI------AP--------PK 244

Query: 374 VDAAVPQKPTKAPVLRVDALGREIDEHGNVVNRTKPSNLSTLKVNINKQKKDAF-QILKP 432
           V+     KPT    L +D  GR +D  G  +  T    + TLK NI   K++ F Q LK 
Sbjct: 245 VELKDQTKPTP---LILDEQGRTVDATGKEIELT--HRMPTLKANIRAVKREQFKQQLKE 299

Query: 433 ELEVDPNVNPHFDPRMGINKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGAKER 492
           +   D   N  FDPR+ I  S+    +R TF+F ++GK+ K A+ LR K+Q      ++ 
Sbjct: 300 KPSEDMESNTFFDPRVSIAPSQR---QRRTFKFHDKGKFEKIAQRLRTKAQL-----EKL 351

Query: 493 QAKQAQLAKAKGGTDINPNLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDV 552
           QA+ +Q A+ K G   +  L  +A +   KE  +  IPEIEWWD+ ++  G       D+
Sbjct: 352 QAEISQAAR-KTGIHTSTRLALIAPK---KELKEGDIPEIEWWDSYIIPNGF------DL 401

Query: 553 TIEDKLKRE---KITIYVEHPRPIEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAREKDR 609
           T E+  KRE    IT  VEHP  + PP +   P    + LTKKEQKKLR Q R   +K+ 
Sbjct: 402 T-EENPKREDYFGITNLVEHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKEL 460

Query: 610 QEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKL 669
           QE +R GL+ PP+PKV++SNLM+VLG+EA QDPT++E  +R+  A+R++AH + N ARKL
Sbjct: 461 QEKVRLGLMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKL 520

Query: 670 TPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGI 729
           T AE+R+ K+ K   +  S    +SVY++ +LS+P  +FK++ NA +  LTG  V+ + +
Sbjct: 521 T-AEQRKVKKIKKLKEDISQGVHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDV 579

Query: 730 NVVVVEGGSKSIKRYGKLMLRRIDWAKAVKEEDEDEDETTD-----------KPVNKCVL 778
           NVVVVEGG K+ K++ +LML RI W       DE    T             K  NKCVL
Sbjct: 580 NVVVVEGGPKAQKKFKRLMLHRIKW-------DEQTSNTKGDDDEESDEEAVKKTNKCVL 632

Query: 779 VWQGNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAVN 821
           VW+G     SF      +C TE  A++ F   G  HYWDLA++
Sbjct: 633 VWEGTAKDRSFGEMKFKQCPTENMAREHFKKHGAEHYWDLALS 675

Participates in pre-mRNA splicing. May play a role in the assembly of the U4/U5/U6 tri-snRNP complex.
Bos taurus (taxid: 9913)

>sp\|Q5R5F1\|PRPF3_PONAB U4/U6 small nuclear ribonucleoprotein Prp3 OS=Pongo abelii GN=PRPF3 PE=2 SV=1	Back alignment and function description

>sp\|O43395\|PRPF3_HUMAN U4/U6 small nuclear ribonucleoprotein Prp3 OS=Homo sapiens GN=PRPF3 PE=1 SV=2	Back alignment and function description

>sp\|Q922U1\|PRPF3_MOUSE U4/U6 small nuclear ribonucleoprotein Prp3 OS=Mus musculus GN=Prpf3 PE=1 SV=1	Back alignment and function description

>sp\|Q5ZJ85\|PRPF3_CHICK U4/U6 small nuclear ribonucleoprotein Prp3 OS=Gallus gallus GN=PRPF3 PE=2 SV=1	Back alignment and function description

>sp\|Q09856\|YAF2_SCHPO Uncharacterized protein C29E6.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC29E6.02 PE=4 SV=1	Back alignment and function description

>sp\|Q03338\|PRP3_YEAST U4/U6 small nuclear ribonucleoprotein PRP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP3 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		826
297736440		882	unnamed protein product [Vitis vinifera]	0.983	0.920	0.644	0.0
449507556		923	PREDICTED: LOW QUALITY PROTEIN: U4/U6 sm	0.983	0.879	0.617	0.0
449451683		923	PREDICTED: U4/U6 small nuclear ribonucle	0.983	0.879	0.619	0.0
356495750		832	PREDICTED: U4/U6 small nuclear ribonucle	0.955	0.948	0.626	0.0
356540367		851	PREDICTED: U4/U6 small nuclear ribonucle	0.963	0.935	0.612	0.0
356574993		801	PREDICTED: U4/U6 small nuclear ribonucle	0.921	0.950	0.616	0.0
357444987		794	U4/U6 small nuclear ribonucleoprotein Pr	0.923	0.960	0.602	0.0
359486305		581	PREDICTED: U4/U6 small nuclear ribonucle	0.664	0.944	0.747	0.0
15217815		786	Pre-mRNA-splicing factor 3 [Arabidopsis	0.897	0.942	0.586	0.0
25090452		786	At1g28060/F13K9_16 [Arabidopsis thaliana	0.897	0.942	0.585	0.0

>gi\|297736440\|emb\|CBI25311.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  999 bits (2583), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/892 (64%), Positives = 663/892 (74%), Gaps = 80/892 (8%)

Query: 4   DKSSKRSHDHHRDRDGEHRHRHRDRDDKHRDHHHHRSSDHKSSRRDERERSRDREKSIDE 63
           D+SS++   + R+R+    HR R+RD+  RD   +R   H+S   DE  R        D+
Sbjct: 2   DRSSEKEKSNRRNRESTKDHRDRNRDN--RDSRENREHKHRSKEDDEDHRHHHSGGGGDK 59

Query: 64  RDFKREKSHDD---------RERDRDFKREKSHEERDSRRDRDRSREVKRE-EFDDGDDV 113
              ++  S DD         R  DR  KRE+SHE R+  RDR    EVKRE E +   D 
Sbjct: 60  HRSEKRSSRDDSKHRDADRHRSSDRGSKRERSHE-REGSRDRAADEEVKREREGERSHDS 118

Query: 114 ASEVKKKRKARDESEERGEKKNARV----------------LDEK------REKKRKFED 151
           A     KRK R ESE+RG+    R+                 D K      R ++RKFED
Sbjct: 119 AHS--HKRKERGESEDRGDGGEKRIRVSTERRERRRFEDRVEDVKESNGVERRERRKFED 176

Query: 152 NFVKEEEDDGGIS--GNANVSEIYLKQEVN---GHDSTNAGGSANSNGAAVESITMASRT 206
               +EED GG     N N  E  +K+E +   G  ++N  GS   NG   E + MA R 
Sbjct: 177 RV--KEEDLGGFDEVKNVNFDEKSVKKEESEELGDAASNGSGSI-GNGVVPEPLNMAPRL 233

Query: 207 SPDTTMAAGDPPFPTKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSAAGKSGSLSLDA 266
            P+T++A   PP PTKVSSISTTNENKGVSITRSHEV GKSSTDGT+SAAGKSG+LSLDA
Sbjct: 234 VPETSLAPSLPP-PTKVSSISTTNENKGVSITRSHEVPGKSSTDGTTSAAGKSGNLSLDA 292

Query: 267 LAKAKKALQMQKELSEKLKKIATLSKGS--SSDGS----------------GKVQG--PA 306
           LAKAKKALQMQKELSEKLKKI  L+KG+  SSDGS                GK+ G  P 
Sbjct: 293 LAKAKKALQMQKELSEKLKKIPLLNKGASPSSDGSPQLKPKEEVTLPSSTTGKLLGSVPL 352

Query: 307 ATASDAAA-----------AAAAASVQPPTSSVPAFPGLANITNIEAVKRAQELAAKMGF 355
            TA++A +           AAAAASV P  S V A  GL ++ N EAVKRAQELAAKMGF
Sbjct: 353 TTATEAVSLVAMPSTSTLPAAAAASVMPSASGVGALAGLTSMPNFEAVKRAQELAAKMGF 412

Query: 356 RQDPEFAPIINCFPGQPPVDAAVPQKPTKAPVLRVDALGREIDEHGNVVNRTKPSNLSTL 415
           RQDPEFAP+IN FPGQ P D AV QKP KAPVLR+DALGREIDEHGNVVN  K +NLSTL
Sbjct: 413 RQDPEFAPLINMFPGQMPTDVAVQQKPAKAPVLRLDALGREIDEHGNVVNMPKLNNLSTL 472

Query: 416 KVNINKQKKDAFQILKPELEVDPNVNPHFDPRMGINKSKLLRPKRMTFQFVEEGKWSKEA 475
           KVNINKQKKDAFQILKPEL+VDP  NPHFD RMGI+K+KLLRPKRM FQFVEEGKWS++A
Sbjct: 473 KVNINKQKKDAFQILKPELDVDPESNPHFDSRMGIDKNKLLRPKRMNFQFVEEGKWSRDA 532

Query: 476 EILRVKSQFGEAGAKERQAKQAQLAKAKGGTDINPNLIEVAERVITKEKPKDPIPEIEWW 535
           EI+++KSQFGEA AKE +AKQAQLA+AK   DINPNLIEV+ERVI KEKPKD IPE+EWW
Sbjct: 533 EIIKLKSQFGEAQAKELKAKQAQLARAKAEPDINPNLIEVSERVIIKEKPKDQIPEVEWW 592

Query: 536 DAPLLLTGSYADISDDVTIEDKLKREKITIYVEHPRPIEPPAEPAPPPPQPLKLTKKEQK 595
           D P L +G+Y D    +T EDKLK +KITIY+EHPRPIEPPAEPAPPPPQPLKLTK+EQK
Sbjct: 593 DVPFLHSGTYGDTDGGIT-EDKLKMDKITIYLEHPRPIEPPAEPAPPPPQPLKLTKREQK 651

Query: 596 KLRTQRRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAE 655
           KLRTQRRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLE EIRSAAAE
Sbjct: 652 KLRTQRRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEMEIRSAAAE 711

Query: 656 REQAHIDRNIARKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAH 715
           REQAH+DRNIARKLTPAERREKKERKLFDDP+++ETIVSVYKINDLSHP+TRFKVD+NA 
Sbjct: 712 REQAHVDRNIARKLTPAERREKKERKLFDDPNTLETIVSVYKINDLSHPQTRFKVDINAQ 771

Query: 716 ENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKEEDEDEDETTDKPVNK 775
           ENRLTGCAVI +GI+VVVVEGGSK IKRYGKLML+RI+WA AV+ E +D+++  +KP+N 
Sbjct: 772 ENRLTGCAVISDGISVVVVEGGSKPIKRYGKLMLKRINWAAAVENE-DDDEDENEKPLNS 830

Query: 776 CVLVWQGNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAVNFN-DEI 826
           CVLVWQG+VA+PSFN+F  H+C TEAAA+K+F+DAGV HYWDLAVNF+ D+I
Sbjct: 831 CVLVWQGSVAKPSFNKFNFHQCRTEAAARKIFSDAGVGHYWDLAVNFSGDQI 882

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449507556\|ref\|XP_004163065.1\| PREDICTED: LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein Prp3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449451683\|ref\|XP_004143591.1\| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356495750\|ref\|XP_003516736.1\| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3-like [Glycine max]	Back alignment and taxonomy information

>gi\|356540367\|ref\|XP_003538661.1\| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3-like [Glycine max]	Back alignment and taxonomy information

>gi\|356574993\|ref\|XP_003555627.1\| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3-like [Glycine max]	Back alignment and taxonomy information

>gi\|357444987\|ref\|XP_003592771.1\| U4/U6 small nuclear ribonucleoprotein Prp3 [Medicago truncatula] gi\|355481819\|gb\|AES63022.1\| U4/U6 small nuclear ribonucleoprotein Prp3 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|359486305\|ref\|XP_002275798.2\| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|15217815\|ref\|NP_174127.1\| Pre-mRNA-splicing factor 3 [Arabidopsis thaliana] gi\|12323002\|gb\|AAG51492.1\|AC069471_23 hypothetical protein [Arabidopsis thaliana] gi\|22022524\|gb\|AAM83220.1\| At1g28060/F13K9_16 [Arabidopsis thaliana] gi\|332192786\|gb\|AEE30907.1\| Pre-mRNA-splicing factor 3 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|25090452\|gb\|AAN72305.1\| At1g28060/F13K9_16 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		826
TAIR\|locus:2010519		786	AT1G28060 "AT1G28060" [Arabido	0.271	0.284	0.723	3.9e-177
TAIR\|locus:2082003		437	AT3G55930 "AT3G55930" [Arabido	0.345	0.652	0.531	3.5e-86
UNIPROTKB\|H9L3J2		684	RPRD2 "Uncharacterized protein	0.509	0.615	0.353	5.5e-61
UNIPROTKB\|F2Z4C4		683	PRPF3 "U4/U6 small nuclear rib	0.490	0.592	0.365	3.9e-60
UNIPROTKB\|Q2KIA6		683	PRPF3 "U4/U6 small nuclear rib	0.490	0.592	0.365	3.9e-60
UNIPROTKB\|E2R4I0		683	PRPF3 "Uncharacterized protein	0.490	0.592	0.365	3.9e-60
UNIPROTKB\|E7EVD1		634	PRPF3 "U4/U6 small nuclear rib	0.490	0.638	0.365	3.9e-60
UNIPROTKB\|O43395		683	PRPF3 "U4/U6 small nuclear rib	0.490	0.592	0.365	3.9e-60
UNIPROTKB\|I3LJQ7		683	PRPF3 "Uncharacterized protein	0.490	0.592	0.365	3.9e-60
RGD\|1310555		683	Prpf3 "PRP3 pre-mRNA processin	0.490	0.592	0.365	5e-60

TAIR\|locus:2010519 AT1G28060 "AT1G28060" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 859 (307.4 bits), Expect = 3.9e-177, Sum P(3) = 3.9e-177
 Identities = 162/224 (72%), Positives = 193/224 (86%)

Query:   602 RLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHI 661
             RLA+EK++QEMIRQGL+EPPK KVKMSNLMKVLGSEATQDPT+LEKEIR+AAAEREQAH 
Sbjct:   563 RLAKEKEKQEMIRQGLLEPPKAKVKMSNLMKVLGSEATQDPTKLEKEIRTAAAEREQAHT 622

Query:   662 DRNIARKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLTG 721
             DRN ARKLTPAE+REKKERKLFDDP++VETIVSVYKI  LSHPKTRFKV++NA ENRLTG
Sbjct:   623 DRNAARKLTPAEKREKKERKLFDDPTTVETIVSVYKIKKLSHPKTRFKVEMNARENRLTG 682

Query:   722 CAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKXXXXXXXXXXXKPVNKCVLVWQ 781
             C+V+ + ++VVVVEG SK+IKRYGKLM++RI+W +A +              NKC LVWQ
Sbjct:   683 CSVMTDEMSVVVVEGKSKAIKRYGKLMMKRINWEEAERKEGNEDEEEEVNGGNKCWLVWQ 742

Query:   782 GNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAVNFNDE 825
             G++ +PSF+RF VHEC+TE+ AKKVF DAGV HYWDLAVN++D+
Sbjct:   743 GSIGKPSFHRFHVHECVTESTAKKVFMDAGVVHYWDLAVNYSDD 786

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR\|locus:2082003 AT3G55930 "AT3G55930" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|H9L3J2 RPRD2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F2Z4C4 PRPF3 "U4/U6 small nuclear ribonucleoprotein Prp3" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2KIA6 PRPF3 "U4/U6 small nuclear ribonucleoprotein Prp3" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R4I0 PRPF3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E7EVD1 PRPF3 "U4/U6 small nuclear ribonucleoprotein Prp3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|O43395 PRPF3 "U4/U6 small nuclear ribonucleoprotein Prp3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LJQ7 PRPF3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

RGD\|1310555 Prpf3 "PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00029506001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (617 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00025837001	SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (1007 aa)	•	•	•	0.493
	GSVIVG00025331001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (569 aa)		•	•	0.416

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		826
pfam08572		222	pfam08572, PRP3, pre-mRNA processing factor 3 (PRP	4e-77
pfam06544		127	pfam06544, DUF1115, Protein of unknown function (D	3e-43
TIGR01642		509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	2e-10
TIGR01642		509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	3e-09
TIGR01642		509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	9e-09
PRK12678		672	PRK12678, PRK12678, transcription termination fact	6e-06
PRK12678		672	PRK12678, PRK12678, transcription termination fact	5e-05
TIGR01622		457	TIGR01622, SF-CC1, splicing factor, CC1-like famil	7e-05
pfam08648		158	pfam08648, DUF1777, Protein of unknown function (D	1e-04
PRK10019		279	PRK10019, PRK10019, nickel/cobalt efflux protein R	1e-04
pfam08648		158	pfam08648, DUF1777, Protein of unknown function (D	2e-04
TIGR01622		457	TIGR01622, SF-CC1, splicing factor, CC1-like famil	3e-04
pfam08648		158	pfam08648, DUF1777, Protein of unknown function (D	0.002
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.002
TIGR01622		457	TIGR01622, SF-CC1, splicing factor, CC1-like famil	0.004
PRK10811		1068	PRK10811, rne, ribonuclease E; Reviewed	0.004
PRK00247		429	PRK00247, PRK00247, putative inner membrane protei	0.004

>gnl\|CDD\|219911 pfam08572, PRP3, pre-mRNA processing factor 3 (PRP3)	Back alignment and domain information

 Score =  248 bits (636), Expect = 4e-77
 Identities = 117/233 (50%), Positives = 151/233 (64%), Gaps = 14/233 (6%)

Query: 441 NPHFDPRMGINKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGAKERQAKQAQLA 500
           NP+ DPRM   K K  + +R   QF+E+GK+S++AE LR +++  E   + R +++AQ A
Sbjct: 2   NPYLDPRMAEAKRK--KRRRRGLQFIEKGKFSQQAEELRREAKLEEE--EARISEEAQNA 57

Query: 501 KAKGGTDINPNLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKR 560
             K  TD+       AE++  KE P D +P+IEWWD P+L    Y D+ D+   +   + 
Sbjct: 58  GLKSATDL-------AEKIPKKELPDD-VPDIEWWDMPILDDPDYNDLEDESDEDIDEEM 109

Query: 561 EKITIYVEHPRPIEPPAEPAPPPP--QPLKLTKKEQKKLRTQRRLAREKDRQEMIRQGLI 618
             IT Y+EHP PIEPP E   PPP   PL LTKKEQKKLR QRR  + K++QE IR GL 
Sbjct: 110 SSITNYIEHPVPIEPPWEAHYPPPIRPPLYLTKKEQKKLRRQRRKEKRKEKQERIRLGLE 169

Query: 619 EPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTP 671
            PP PKVK+SNLM+VLGSEA QDPT++E E+R   AER QAH DRN  RKLT 
Sbjct: 170 PPPPPKVKLSNLMRVLGSEAVQDPTKVEAEVRRQVAERRQAHEDRNEERKLTA 222

Pre-mRNA processing factor 3 (PRP3) is a U4/U6-associated splicing factor. The human PRP3 has been implicated in autosomal retinitis pigmentosa. Length = 222

>gnl\|CDD\|219080 pfam06544, DUF1115, Protein of unknown function (DUF1115)	Back alignment and domain information

>gnl\|CDD\|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor	Back alignment and domain information

>gnl\|CDD\|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor	Back alignment and domain information

>gnl\|CDD\|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor	Back alignment and domain information

>gnl\|CDD\|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional	Back alignment and domain information

>gnl\|CDD\|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional	Back alignment and domain information

>gnl\|CDD\|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family	Back alignment and domain information

>gnl\|CDD\|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777)	Back alignment and domain information

>gnl\|CDD\|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional	Back alignment and domain information

>gnl\|CDD\|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777)	Back alignment and domain information

>gnl\|CDD\|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family	Back alignment and domain information

>gnl\|CDD\|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777)	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family	Back alignment and domain information

>gnl\|CDD\|236766 PRK10811, rne, ribonuclease E; Reviewed	Back alignment and domain information

>gnl\|CDD\|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		826
KOG2769		522	consensus Putative u4/u6 small nuclear ribonucleop	100.0
PF08572		223	PRP3: pre-mRNA processing factor 3 (PRP3); InterPr	100.0
PF06544		128	DUF1115: Protein of unknown function (DUF1115); In	100.0
TIGR01642		509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	97.4
KOG4676		479	consensus Splicing factor, arginine/serine-rich [R	97.31
TIGR01642		509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	96.98
KOG2888		453	consensus Putative RNA binding protein [General fu	94.94
PF06495		182	Transformer: Fruit fly transformer protein; InterP	94.89
PF04940		93	BLUF: Sensors of blue-light using FAD; InterPro: I	94.78
TIGR01622		457	SF-CC1 splicing factor, CC1-like family. A homolog	94.56
KOG0670		752	consensus U4/U6-associated splicing factor PRP4 [R	93.92
KOG1847		878	consensus mRNA splicing factor [RNA processing and	92.69
KOG0147		549	consensus Transcriptional coactivator CAPER (RRM s	91.5
KOG0147		549	consensus Transcriptional coactivator CAPER (RRM s	91.4
KOG0670		752	consensus U4/U6-associated splicing factor PRP4 [R	90.12
KOG0415		479	consensus Predicted peptidyl prolyl cis-trans isom	89.04
KOG0415		479	consensus Predicted peptidyl prolyl cis-trans isom	82.87
PRK14432		93	acylphosphatase; Provisional	80.05

>KOG2769 consensus Putative u4/u6 small nuclear ribonucleoprotein [RNA processing and modification]	Back alignment and domain information

Probab=100.00  E-value=2.7e-126  Score=1036.58  Aligned_cols=422  Identities=51%  Similarity=0.766  Sum_probs=370.9

Q ss_pred             ccHHHHHHHHHHHHHhcCCCCCCCCccccCCCCCCCCCCCC--CCCCCCCCceEecCCC--CcccCCCCeeeccCCCccc
Q 003362          338 TNIEAVKRAQELAAKMGFRQDPEFAPIINCFPGQPPVDAAV--PQKPTKAPVLRVDALG--REIDEHGNVVNRTKPSNLS  413 (826)
Q Consensus       338 ~~~ea~~r~~~laa~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~k~~~L~LD~~G--R~ID~~GkvI~~~kp~~~s  413 (826)
                      ..+++++|++.|+..+              ++++.+...++  ...|++++.|+.|+.|  |.||+.|++|. ++|...+
T Consensus        96 ~~~~~~~r~~~L~~~~--------------~~~~~t~~~~~~~a~~~tkg~~l~~~~le~~r~i~e~~~~i~-t~~~~~~  160 (522)
T KOG2769|consen   96 QILEAVKRPQELAQNI--------------QNSIRTPDMPISKAIKQTKGAVLRQDALEKKRKIDELGNVID-TKPSNLS  160 (522)
T ss_pred             HHHHHHhhhhhhcccc--------------ccccCCcccchhhhhcccccceeehhhhhhhhhHhhhcchhh-ccccccc
Confidence            4468999999986652              23334444333  5688889999999999  99999999999 7887777


Q ss_pred             chhhhhhhhhhhHHHhcCCCccCCCCCCCCCCCCCCCCcccccCCCccceeeccCChhHHHHHHHHHHhhhhhHhHHHHH
Q 003362          414 TLKVNINKQKKDAFQILKPELEVDPNVNPHFDPRMGINKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGAKERQ  493 (826)
Q Consensus       414 TLKaNir~~k~e~f~~~k~~~~~~~~~npyfD~r~~~~~~k~~r~kR~~f~F~ekGk~~kqAe~lR~k~ql~e~~~~~lk  493 (826)
                      +|..|+                         |++ ...  ...| .+++|+||++|+|++.|++.|.++++     +.|+
T Consensus       161 ~li~n~-------------------------d~~-~~~--~~~r-~rr~f~f~e~gkf~~~an~~r~~a~l-----e~Lq  206 (522)
T KOG2769|consen  161 GLIPNL-------------------------DPR-TKK--PRKR-GRRTFLFHESGKFIKLANRHRYKAQL-----ERLQ  206 (522)
T ss_pred             cccccc-------------------------Chh-hcc--chhc-cccceeecccchHHHHHHHHHHHHHH-----HHHH
Confidence            766554                         443 122  2234 55699999999999999999987665     7899


Q ss_pred             HHHHHHHHhcCCCCCCcchhHHHhhhhccCCCCCCCCccccccccccCCCCCCCCCcccchhhhhccccccceeeCCCCC
Q 003362          494 AKQAQLAKAKGGTDINPNLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKITIYVEHPRPI  573 (826)
Q Consensus       494 ~~~a~~aka~~~~~~~~~l~e~~~~~~~k~~~~~~iP~VEWWD~~iL~~~~y~~i~~~~~~~~~i~~~~It~yVEHPvpi  573 (826)
                      .+|++++++   +||++ ++.++..++     .++||+|||||.+||+.+.|.+  +   +...|....||+|||||+||
T Consensus       207 ~eis~~a~k---~gI~~-~~~la~~~p-----~~~iP~iEwwD~~il~~~d~~d--E---n~~~i~~~~it~~IeHP~~~  272 (522)
T KOG2769|consen  207 NEISQAARK---TGIST-ATKLALIAP-----KDDIPAIEWWDSNILTNDDTID--E---NHLKIDQSIITNLIEHPIPM  272 (522)
T ss_pred             HHHHHHHHh---cCCch-hhhhhhccC-----CCCCchhhhhcccccccCCccc--c---cchhhhHHHHHHHhcCCccc
Confidence            999998874   45766 677777665     3899999999999998873332  2   12234356799999999999


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhhhhhhccccCCCChHHHHHHHHHH
Q 003362          574 EPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAA  653 (826)
Q Consensus       574 ~pp~e~~~p~~~plyLTKKEqKKlRRqrR~e~~KEkQdKIRLGL~PPPpPKVKLSNLMrVLg~eAV~DPTkvEa~VR~Qm  653 (826)
                      .||.++..|+++|||||||||||||||+|.|++||+|+||||||+|||+|||||||||+|||+|||||||+||++||.||
T Consensus       273 ~PP~e~~~p~~l~vyLTKKErKKLRRQ~R~ea~KEkqekIrLGL~~ppePKVKiSNLMrVLgsEAiqDPTK~E~~VR~Q~  352 (522)
T KOG2769|consen  273 LPPAENLTPVSLPVYLTKKERKKLRRQRRKEARKEKQEKIRLGLEPPPEPKVKLSNLMRVLGSEAIQDPTKLEAEVRDQM  352 (522)
T ss_pred             CCCcccCCCCccceeecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHhhhccccCcHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHhhhcCCCCCCceEEEEEEEccCCCCccccccccccccccceeEEEEcCCceEEE
Q 003362          654 AEREQAHIDRNIARKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVV  733 (826)
Q Consensus       654 aeR~~~He~~N~eRKLT~EqRreKk~~Kl~eD~~s~gv~~aVyrI~~Lsnp~hrFKV~~NAqQl~LTG~~li~~~~nlVV  733 (826)
                      |+|+++||++|++||||++||++|+.+|+.+|+ +.||||+||+|++|+||++||||++||+||+|||||||+.+|||||
T Consensus       353 aeR~kaHe~~N~aRKLT~~qkreKk~rKl~ED~-st~v~~~V~r~K~l~~p~~rFKve~NAkql~ltG~~vl~~d~~vvV  431 (522)
T KOG2769|consen  353 AERQKAHEDENAARKLTPEQKREKKERKLFEDP-STGVHCSVYRIKNLQNPKKRFKVEMNAKQLQLTGVCVLHRDMNVVV  431 (522)
T ss_pred             HHHHHHhhhhhhhhcCCHHHHHHHHHhhhccCC-CceEEEEEEEEecccCCccceeeeechhhhceeeeEEEecCCcEEE
Confidence            999999999999999999999999999999998 6899999999999999999999999999999999999999999999


Q ss_pred             EecchHHHHHHHHHHhhhccCCccccCCCccccccCCCCCCeeEEEEeeecCCCCCCCceeEecCCHHHHHHHHHhcCch
Q 003362          734 VEGGSKSIKRYGKLMLRRIDWAKAVKEEDEDEDETTDKPVNKCVLVWQGNVARPSFNRFFVHECMTEAAAKKVFADAGVA  813 (826)
Q Consensus       734 VEGG~KsiKkYkkLMl~RIkW~E~~~~~~d~~de~~d~~~N~C~LVWEG~vk~r~F~~w~~k~c~te~~Are~L~~~~~e  813 (826)
                      ||||+||||||++|||+||||+|.+.-. .++|++.+..+|+|+|||||++.+++|+.|+|++|+|+.+|++||++|||+
T Consensus       432 vEGg~Ka~KkykrLMl~RIkW~e~~~~k-~d~~~e~~~~~N~C~lvWEG~~~rr~F~~~~~k~c~~e~~Ar~~f~k~gve  510 (522)
T KOG2769|consen  432 VEGGPKAQKKYKRLMLKRIKWEEDFELK-KDEDEEAVNGGNKCVLVWEGTVQRRSFREFKFKECPTEKMAREFFEKHGVE  510 (522)
T ss_pred             EecCHHHHHHHHHHHHhhcCchhhhhhc-ccchhhccCCCceEEEEeeccccCCcccceeEEecCcHHHHHHHHHHcchH
Confidence            9999999999999999999999996311 245566778999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhcccC
Q 003362          814 HYWDLAVNFND  824 (826)
Q Consensus       814 hYWdlA~~~~~  824 (826)
                      ||||||++|+.
T Consensus       511 HyWdLa~s~s~  521 (522)
T KOG2769|consen  511 HYWDLAYSYSV  521 (522)
T ss_pred             HHHHHHhhccC
Confidence            99999999986

>PF08572 PRP3: pre-mRNA processing factor 3 (PRP3); InterPro: IPR013881 Pre-mRNA processing factor 3 (PRP3) is a U4/U6-associated splicing factor	Back alignment and domain information

>PF06544 DUF1115: Protein of unknown function (DUF1115); InterPro: IPR010541 This entry represents the C terminus of several eukaryotic RWD domain-containing proteins of unknown function	Back alignment and domain information

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor	Back alignment and domain information

>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]	Back alignment and domain information

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor	Back alignment and domain information

>KOG2888 consensus Putative RNA binding protein [General function prediction only]	Back alignment and domain information

>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly)	Back alignment and domain information

>PF04940 BLUF: Sensors of blue-light using FAD; InterPro: IPR007024 An FAD-binding domain, BLUF, exemplified by the N terminus of the AppA protein, (Q53119 from SWISSPROT), from Rhodobacter sphaeroides, is present in various proteins, primarily from Bacteria	Back alignment and domain information

>TIGR01622 SF-CC1 splicing factor, CC1-like family	Back alignment and domain information

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]	Back alignment and domain information

>KOG1847 consensus mRNA splicing factor [RNA processing and modification]	Back alignment and domain information

>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]	Back alignment and domain information

>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]	Back alignment and domain information

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]	Back alignment and domain information

>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14432 acylphosphatase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		826
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
3pgw_S		437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	6e-11
3pgw_S		437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	3e-10
3pgw_S		437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	7e-10
3pgw_S		437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	5e-09
3pgw_S		437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	2e-08
3pgw_S		437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	1e-07
3pgw_S		437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	1e-07
3pgw_S		437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	1e-05
3pgw_S		437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	7e-05
3pgw_S		437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	8e-05
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 66.0 bits (160), Expect = 4e-11
 Identities = 65/484 (13%), Positives = 128/484 (26%), Gaps = 151/484 (31%)

Query: 380 QKPTKAPVLRVDALGREIDEHGNVVNRTKPSNLSTLKVNINKQKKDAFQILKPELEVDPN 439
           +   + P +       + D   N        N+S L+     + + A   L+P      N
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ--PYLKLRQALLELRPA----KN 152

Query: 440 VNPHFDPRM-GINKSKL----LRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGAKERQA 494
           V       + G  K+ +        ++  +   +  W                 + E   
Sbjct: 153 VLID---GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----------LKNCNSPETVL 199

Query: 495 KQAQ-LAKAKGGTDINPNLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYAD---ISD 550
           +  Q L        I+PN    ++        K  I  I+     LL +  Y +   +  
Sbjct: 200 EMLQKLL-----YQIDPNWTSRSDH---SSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 551 DVTIEDKLK------------REK-ITIYVEHPRPIEPPAEPAPPPPQPLKLTKKEQKKL 597
           +V                   R K +T ++          +          LT  E K L
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-----LTPDEVKSL 306

Query: 598 RTQRRLAREKDRQEMIRQGLIEPPKPKVKMSNL-MKVLGSEATQDPTRLEKEIRSAAAER 656
                L +  D      Q L   P+  +  +   + ++           +   +    ++
Sbjct: 307 -----LLKYLD---CRPQDL---PREVLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDK 354

Query: 657 EQAHIDRNIARKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHE 716
               I+ ++   L PAE      RK+FD        +SV            F    +   
Sbjct: 355 LTTIIESSLN-VLEPAE-----YRKMFDR-------LSV------------FPPSAH--- 386

Query: 717 NRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKEEDEDEDETTDKPVNKC 776
                       I  +++             ++    W   +K +        +K     
Sbjct: 387 ------------IPTILLS------------LI----WFDVIKSDVMVV---VNKLHKYS 415

Query: 777 VLVWQGNVARPSFNRFFVH--------ECMTEAAAKKVFADAGVAHY--------WDLAV 820
           ++       +P  +   +         +   E A  +      V HY         DL  
Sbjct: 416 LV-----EKQPKESTISIPSIYLELKVKLENEYALHRSI----VDHYNIPKTFDSDDLIP 466

Query: 821 NFND 824
            + D
Sbjct: 467 PYLD 470

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437	Back alignment and structure

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437	Back alignment and structure

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437	Back alignment and structure

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437	Back alignment and structure

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437	Back alignment and structure

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437	Back alignment and structure

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437	Back alignment and structure

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437	Back alignment and structure

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437	Back alignment and structure

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		826
1yrx_A		121	Hypothetical protein RSPH03001874; ferredoxin-like	96.25
2iyg_A		124	APPA, antirepressor of PPSR, sensor of blue light;	95.33
1x0p_A		143	Hypothetical protein TLL0078; BLUF, FAD, structura	94.48
2hfn_A		153	Synechocystis photoreceptor (SLR1694); beta sheet	94.47
2byc_A		137	Blue-light receptor of the BLUF-family; signaling	93.15
3gfz_A		413	Klebsiella pneumoniae BLRP1; TIM-barrel, EAL domai	88.45

>1yrx_A Hypothetical protein RSPH03001874; ferredoxin-like fold, flavin binding, photoreceptor, transcr; HET: FMN D9G; 2.30A {Rhodobacter sphaeroides 2} SCOP: d.58.10.2 PDB: 2bun_A*	Back alignment and structure

Probab=96.25  E-value=0.012  Score=55.42  Aligned_cols=85  Identities=18%  Similarity=0.314  Sum_probs=67.0

Q ss_pred             ccccccccceeEEEEcCCceEEEEecchHHHHHHHHHHhhhccCCccccCCCccccccCCCCCCeeEEEEeeecCCCCCC
Q 003362          711 DVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKEEDEDEDETTDKPVNKCVLVWQGNVARPSFN  790 (826)
Q Consensus       711 ~~NAqQl~LTG~~li~~~~nlVVVEGG~KsiKkYkkLMl~RIkW~E~~~~~~d~~de~~d~~~N~C~LVWEG~vk~r~F~  790 (826)
                      ..|-.++++||+.+++.+.=+=|+||.+.++..   |+ .||.=               |..-..|.++-.|.+..|.|.
T Consensus        30 r~~N~~~gITG~Ll~~~g~F~Q~LEG~~~~V~~---Ly-~rI~~---------------D~RH~~v~~l~~~~i~~R~F~   90 (121)
T 1yrx_A           30 QAHNARAQLTGALFYSQGVFFQWLEGRPAAVAE---VM-THIQR---------------DRRHSNVEILAEEPIAKRRFA   90 (121)
T ss_dssp             HHHHHHHTCEEEEEEETTEEEEEEEECHHHHHH---HH-HHHHT---------------CTTEEEEEEEEEEEESSCSCS
T ss_pred             HHhhhhcCCEEEEEEeCCEEEEEecCCHHHHHH---HH-HHHhc---------------CCCcCCeEEEEeeeccccccC
Confidence            456678999999999999989999999999975   33 45542               223456889999999999999


Q ss_pred             CceeEecCCHHHHHHHHHhcCchhHHHHHhcccCCC
Q 003362          791 RFFVHECMTEAAAKKVFADAGVAHYWDLAVNFNDEI  826 (826)
Q Consensus       791 ~w~~k~c~te~~Are~L~~~~~ehYWdlA~~~~~~~  826 (826)
                      +|.|..+..+.            ..|.++..++.+|
T Consensus        91 ~WsM~~~~~~~------------~~~~l~~~~~~~~  114 (121)
T 1yrx_A           91 GWHMQLSCSEA------------DMRSLGLAESRQI  114 (121)
T ss_dssp             SEEEEECCCHH------------HHHHTTCCCCCCC
T ss_pred             CCcccccchHH------------HHHhhcccchhhh
Confidence            99999988773            5566666666655

PyMOL of 1yrx

>2iyg_A APPA, antirepressor of PPSR, sensor of blue light; signal transduction; HET: FMN; 2.3A {Rhodobacter sphaeroides} PDB: 2iyi_A*	Back alignment and structure

>1x0p_A Hypothetical protein TLL0078; BLUF, FAD, structural genomics, electron transport; HET: FAD; 2.00A {Thermosynechococcus elongatus} SCOP: d.58.10.2	Back alignment and structure

>2hfn_A Synechocystis photoreceptor (SLR1694); beta sheet ferredoxin-like fold, flavin binding protein, electron transport; HET: FMN; 1.80A {Synechocystis SP} PDB: 2hfo_A* 3mzi_A*	Back alignment and structure

>2byc_A Blue-light receptor of the BLUF-family; signaling protein, photoreceptor, flavin; HET: FMN; 1.9A {Rhodobacter sphaeroides} SCOP: d.58.10.2	Back alignment and structure

>3gfz_A Klebsiella pneumoniae BLRP1; TIM-barrel, EAL domain, BLUF domain, hydrolase, signaling PR; HET: C2E FMN; 2.05A {Klebsiella pneumoniae subsp} PDB: 3gfy_A* 3gfx_A* 3gg0_A* 3gg1_A* 2kb2_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		826
d1yrxa1		114	Sensor of blue light AppA {Rhodobacter sphaeroides	94.53
d2byca1		136	Blue light receptor BlrB {Rhodobacter sphaeroides	93.53
d1x0pa1		142	Hypothetical protein Tll0078 {Thermosynechococcus	93.23
d2acya_		98	Acylphosphatase {Cow (Bos taurus) [TaxId: 9913]}	85.93
d1apsa_		98	Acylphosphatase {Horse (Equus caballus) [TaxId: 97	84.45

>d1yrxa1 d.58.10.2 (A:17-130) Sensor of blue light AppA {Rhodobacter sphaeroides [TaxId: 1063]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: BLUF domain
domain: Sensor of blue light AppA
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.53  E-value=0.039  Score=49.20  Aligned_cols=78  Identities=15%  Similarity=0.296  Sum_probs=62.1

Q ss_pred             ccccccccceeEEEEcCCceEEEEecchHHHHHHHHHHhhhccCCccccCCCccccccCCCCCCeeEEEEeeecCCCCCC
Q 003362          711 DVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKEEDEDEDETTDKPVNKCVLVWQGNVARPSFN  790 (826)
Q Consensus       711 ~~NAqQl~LTG~~li~~~~nlVVVEGG~KsiKkYkkLMl~RIkW~E~~~~~~d~~de~~d~~~N~C~LVWEG~vk~r~F~  790 (826)
                      ..|-..+++||+.+++.+.-+=|+||.+-++..    ++.||.=               |..-..|.+|-++.+..|.|.
T Consensus        26 ~~~N~~~gITG~Ll~~~~~F~Q~LEG~~~~V~~----l~~rI~~---------------D~RH~~v~~l~~~~i~~R~F~   86 (114)
T d1yrxa1          26 QAHNARAQLTGALFYSQGVFFQWLEGRPAAVAE----VMTHIQR---------------DRRHSNVEILAEEPIAKRRFA   86 (114)
T ss_dssp             HHHHHHHTCEEEEEEETTEEEEEEEECHHHHHH----HHHHHHT---------------CTTEEEEEEEEEEEESSCSCS
T ss_pred             HHhccccCCEEEEEEeCCEEEEEeeCCHHHHHH----HHHhccC---------------CCCcCceEEEeecccCccccC
Confidence            346678999999999998889999999999987    3445532               223346999999999999999


Q ss_pred             CceeEecCCHHHHHHHH
Q 003362          791 RFFVHECMTEAAAKKVF  807 (826)
Q Consensus       791 ~w~~k~c~te~~Are~L  807 (826)
                      +|.|.....+.+.+.+.
T Consensus        87 ~W~M~~~~~~~d~~~l~  103 (114)
T d1yrxa1          87 GWHMQLSCSEADMRSLG  103 (114)
T ss_dssp             SEEEEECCCHHHHHHTT
T ss_pred             CCcCcCcccchHHHHhh
Confidence            99999988776666554

PyMOL of d1yrxa1

>d2byca1 d.58.10.2 (A:1-136) Blue light receptor BlrB {Rhodobacter sphaeroides [TaxId: 1063]}	Back information, alignment and structure

>d1x0pa1 d.58.10.2 (A:102-243) Hypothetical protein Tll0078 {Thermosynechococcus elongatus [TaxId: 146786]}	Back information, alignment and structure

>d2acya_ d.58.10.1 (A:) Acylphosphatase {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1apsa_ d.58.10.1 (A:) Acylphosphatase {Horse (Equus caballus) [TaxId: 9796]}	Back information, alignment and structure