Citrus Sinensis ID: 003363
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 826 | 2.2.26 [Sep-21-2011] | |||||||
| Q8R146 | 732 | Acylamino-acid-releasing | yes | no | 0.802 | 0.905 | 0.333 | 5e-99 | |
| P13676 | 732 | Acylamino-acid-releasing | yes | no | 0.802 | 0.905 | 0.326 | 3e-97 | |
| P19205 | 732 | Acylamino-acid-releasing | yes | no | 0.796 | 0.898 | 0.321 | 2e-94 | |
| P13798 | 732 | Acylamino-acid-releasing | yes | no | 0.802 | 0.905 | 0.314 | 1e-93 | |
| P80227 | 730 | Acylamino-acid-releasing | yes | no | 0.796 | 0.901 | 0.324 | 6e-92 | |
| P39839 | 657 | Uncharacterized peptidase | yes | no | 0.269 | 0.339 | 0.320 | 7e-31 | |
| P34422 | 740 | Dipeptidyl peptidase fami | no | no | 0.268 | 0.3 | 0.293 | 4e-23 | |
| Q95WU5 | 761 | Dipeptidyl-peptidase 4 OS | N/A | no | 0.284 | 0.308 | 0.237 | 6e-14 | |
| Q9YBQ2 | 582 | Acylamino-acid-releasing | no | no | 0.239 | 0.340 | 0.264 | 2e-13 | |
| Q5BA58 | 722 | Probable dipeptidyl-pepti | yes | no | 0.271 | 0.310 | 0.236 | 9e-13 |
| >sp|Q8R146|APEH_MOUSE Acylamino-acid-releasing enzyme OS=Mus musculus GN=Apeh PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 362 bits (930), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 242/725 (33%), Positives = 369/725 (50%), Gaps = 62/725 (8%)
Query: 116 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP- 174
+Q +L + +F ++ + ++ V A VE G SPSG+ V+R
Sbjct: 51 TQRDLDRMENIRFCRQYLVFHDGDSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAG 110
Query: 175 ---ENESPIQFELWSQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230
E E+W +++ K F++ HG VY D F +SW+ ET + YVAE+
Sbjct: 111 GAVSGEEKQFLEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVAEKKR 170
Query: 231 PSKPTF--------SLGSTKGGSSDKDCNSWKG-QGDWEEDWGETYAGKRQPSLFVININ 281
P +F S + K + KG Q + EDWGET K P L V++I
Sbjct: 171 PKAESFFQTKALDVSASDEEMARPKKPDQAIKGDQFVFYEDWGETMVSKSIPVLCVLDIE 230
Query: 282 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 341
SG + ++G+P+++S GQ WAP + G+ VFVGW E +LGI+YC NR ALY V
Sbjct: 231 SGNISVLEGVPENVSPGQAFWAPGDTGV----VFVGWWHEPFRLGIRYCTNRRSALYYVD 286
Query: 342 VSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401
+S K E S E L V + PR SPD +V+L S H
Sbjct: 287 LSGGKCELL-------SDESLAVCS----------PRLSPDQCRVVYLQYPSL---APHH 326
Query: 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 461
L DW T +SL +VD++P G+ F G+Y S + W +D ++
Sbjct: 327 QCSQLFLYDWYTK--VTSL--VVDIVPR---QLGESFSGIYCSLLPLGCWSADSQRVVFD 379
Query: 462 SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521
S+ S Q + +V+ +G + +T S SW LLT+D D ++A S+P P +K G+
Sbjct: 380 SVQRSRQDLFAVDTQTGSVTSLTAGGSAGSWKLLTIDRDLMVAQFSTPNLPPSLKVGFLP 439
Query: 522 DKANKGTWSWLNV--SSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAI 579
+ + SW+++ + PI ++ ++ P + A FEAI
Sbjct: 440 PAGKEQSVSWVSLEEAEPIPDIHWGIR---------VLHPPPDQENVQY---ADLDFEAI 487
Query: 580 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 639
+ S+ D S P++V+ HGGPHS ++++ A L +G+++L+VNYRGS GFG+++
Sbjct: 488 LLQPSNSPDKSQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDS 547
Query: 640 LQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA 699
+ SLPG VG QDV DV A+ V+ + +V ++GGSHGGFL+ HLIGQ P+ + A
Sbjct: 548 ILSLPGNVGHQDVKDVQFAVQQVLQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSAC 607
Query: 700 AARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK 759
ARNP+ N+ M+GTTDIPDWC VE+ D P + L KSPI +I +VK
Sbjct: 608 IARNPVINIVSMMGTTDIPDWCMVETGFPYSNDYL---PDLNVLEEMLDKSPIKYIPQVK 664
Query: 760 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 819
TP + +LG +D RVP GL+Y AL+ + V +++++P H + + + +SF+N L
Sbjct: 665 TPVLLMLGQEDRRVPFKQGLEYYHALKARNVPVRLLLYPKSTHALSEVEVESDSFMNTVL 724
Query: 820 WFKKY 824
W +
Sbjct: 725 WLHTH 729
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Mus musculus (taxid: 10090) EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1 |
| >sp|P13676|ACPH_RAT Acylamino-acid-releasing enzyme OS=Rattus norvegicus GN=Apeh PE=1 SV=1 | Back alignment and function description |
|---|
Score = 356 bits (914), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 237/725 (32%), Positives = 370/725 (51%), Gaps = 62/725 (8%)
Query: 116 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP- 174
+Q +L + +F ++ + ++ V A VE G SPSG+ V+R
Sbjct: 51 TQRDLERMENIRFCRQYLVFHDGDSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAG 110
Query: 175 ---ENESPIQFELWSQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230
E E+W +++ K F++ HG VY D F +SW+ ET + YVAE+
Sbjct: 111 GTVSGEEKQFLEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVAEKKR 170
Query: 231 PSKPTF--------SLGSTKGGSSDKDCNSWKG-QGDWEEDWGETYAGKRQPSLFVININ 281
P +F S + K + KG Q + EDWGET K P L V++I+
Sbjct: 171 PKAESFFQTKALDISASDDEMARPKKPDQAIKGDQFVFYEDWGETMVSKSIPVLCVLDID 230
Query: 282 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 341
SG + ++G+P+++S GQ WAP + G+ VFVGW E +LGI+YC NR ALY V
Sbjct: 231 SGNISVLEGVPENVSPGQAFWAPGDTGV----VFVGWWHEPFRLGIRYCTNRRSALYYVD 286
Query: 342 VSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401
+S K E L++ + PR SPD +V+L H
Sbjct: 287 LSGGKCEL-----------------LSDGSLAICSPRLSPDQCRIVYLQYPCL---APHH 326
Query: 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 461
L DW T +VD++P G+ F G+Y S + W +D ++
Sbjct: 327 QCSQLCLYDWYTKVT----SVVVDIVPR---QLGESFSGIYCSLLPLGCWSADSQRVVFD 379
Query: 462 SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521
S S Q + +V+ +G + +T A S SW LLT+D D ++A S+P P +K G+
Sbjct: 380 SAQRSRQDLFAVDTQTGSITSLTAAGSAGSWKLLTIDKDLMVAQFSTPSLPPSLKVGFLP 439
Query: 522 DKANKGTWSWLNV--SSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAI 579
+ + SW+++ + PI V+ ++ P + A FEAI
Sbjct: 440 PPGKEQSVSWVSLEEAEPIPGIHWGVR---------VLHPPPDQENVQY---ADLDFEAI 487
Query: 580 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 639
+ S+ D + P++V+ HGGPHS ++++ A L +G+++L+VNYRGS GFG+++
Sbjct: 488 LLQPSNPPDKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDS 547
Query: 640 LQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA 699
+ SLPG VG QDV DV A++ V+ + +V ++GGSHGGFL+ HLIGQ P+ + A
Sbjct: 548 ILSLPGNVGHQDVKDVQFAVEQVLQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSAC 607
Query: 700 AARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK 759
ARNP+ N+A M+G+TDIPDWC VE+ G +S P + KSPI +I +VK
Sbjct: 608 IARNPVINIASMMGSTDIPDWCMVET-GFPYSNSCL--PDLNVWEEMLDKSPIKYIPQVK 664
Query: 760 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 819
TP + +LG +D RVP G++Y RAL+ + V +++++P H + +++ +SF+N L
Sbjct: 665 TPVLLMLGQEDRRVPFKQGMEYYRALKARNVPVRLLLYPKSNHALSEVEAESDSFMNAVL 724
Query: 820 WFKKY 824
W +
Sbjct: 725 WLHTH 729
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P19205|ACPH_PIG Acylamino-acid-releasing enzyme OS=Sus scrofa GN=APEH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 347 bits (890), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 233/724 (32%), Positives = 363/724 (50%), Gaps = 66/724 (9%)
Query: 116 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE 175
+Q +L + +F ++ + ++ V A VE G SPSG+ V+R
Sbjct: 51 TQRDLERMENIRFCRQYLVFHDGDSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAG 110
Query: 176 NESPIQ----FELWSQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230
+ E+W +++ K F++ HG VY D F +SW+ ET + YVA++
Sbjct: 111 GTGTAEEKQFLEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVADKKR 170
Query: 231 PSKPTFSLGSTKG----GSSDKDCNSWKG----QGD---WEEDWGETYAGKRQPSLFVIN 279
P +F TK GS D+ + K +GD + EDWGE K P L V++
Sbjct: 171 PKAESFF--QTKALDVTGSDDEMARTKKPDQAIKGDQFLFYEDWGENMVSKSTPVLCVLD 228
Query: 280 INSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 339
I SG + ++G+P+S+S GQ WAP + G+ VFVGW E +LGI++C NR ALY
Sbjct: 229 IESGNISVLEGVPESVSPGQAFWAPGDTGV----VFVGWWHEPFRLGIRFCTNRRSALYY 284
Query: 340 VRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 399
V ++ K E S E + V + PR SPD +V+L S V
Sbjct: 285 VDLTGGKCELL-------SDESVAVTS----------PRLSPDQCRIVYLRFPSLV---P 324
Query: 400 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 459
H L DW T +VD++P G+ F G+Y S + W +D ++
Sbjct: 325 HQQCGQLCLYDWYTRVT----SVVVDIVPR---QLGEDFSGIYCSLLPLGCWSADSQRVV 377
Query: 460 LSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 519
S S Q + +V+ G + +T S SW LLT+D D ++ S+P P +K G+
Sbjct: 378 FDSPQRSRQDLFAVDTQMGSVTSLTAGGSGGSWKLLTIDRDLMVVQFSTPSVPPSLKVGF 437
Query: 520 FVDKANKGTWSWLNV--SSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFE 577
+ SW+++ + P ++ L Q + A FE
Sbjct: 438 LPPAGKEQAVSWVSLEEAEPFPDISWSIRVLQPPPQ------------QEHVQYAGLDFE 485
Query: 578 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGE 637
AI + S+ + + P++V+ HGGPHS ++++ A L +G+++L+VNYRGS GFG+
Sbjct: 486 AILLQPSNSPEKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQ 545
Query: 638 EALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFV 697
+++ SLPG VG QDV DV A++ V+ + +V ++GGSHGGFL+ HLIGQ P+ +
Sbjct: 546 DSILSLPGNVGHQDVKDVQFAVEQVLQEEHFDAGRVALMGGSHGGFLSCHLIGQYPETYS 605
Query: 698 AAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK 757
A RNP+ N+A M+G+TDIPDWC VE+ S D P + KSPI + +
Sbjct: 606 ACVVRNPVINIASMMGSTDIPDWCMVEAGFSYSSDCL---PDLSVWAAMLDKSPIKYAPQ 662
Query: 758 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNI 817
VKTP + +LG +D RVP G++Y R L+ + V +++++P H + + + +SF+N
Sbjct: 663 VKTPLLLMLGQEDRRVPFKQGMEYYRVLKARNVPVRLLLYPKSTHALSEVEVESDSFMNA 722
Query: 818 GLWF 821
LW
Sbjct: 723 VLWL 726
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Sus scrofa (taxid: 9823) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P13798|ACPH_HUMAN Acylamino-acid-releasing enzyme OS=Homo sapiens GN=APEH PE=1 SV=4 | Back alignment and function description |
|---|
Score = 345 bits (884), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 228/725 (31%), Positives = 362/725 (49%), Gaps = 62/725 (8%)
Query: 116 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE 175
+Q +L + +F ++ + ++ V A VE G SPSG+ V+R
Sbjct: 51 TQRDLERMENIRFCRQYLVFHDGDSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAG 110
Query: 176 NESPIQ----FELWSQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230
P + E+W +++ K F++ HG VY D F +SW+ ET + YVAE+
Sbjct: 111 GTGPGEEKQFLEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVAEKKR 170
Query: 231 PSKPTF-SLGSTKGGSSDKDCNSWKG-----QGD---WEEDWGETYAGKRQPSLFVININ 281
P +F + +SD + K +GD + EDWGE K P L V+++
Sbjct: 171 PKAESFFQTKALDVSASDDEIARLKKPDQAIKGDQFVFYEDWGENMVSKSIPVLCVLDVE 230
Query: 282 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 341
SG + ++G+P+++S GQ WAP + G+ VFVGW E +LGI++C NR ALY V
Sbjct: 231 SGNISVLEGVPENVSPGQAFWAPGDAGV----VFVGWWHEPFRLGIRFCTNRRSALYYVD 286
Query: 342 VSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401
+ K E L++ + PR SPD +V+L S + H
Sbjct: 287 LIGGKCEL-----------------LSDDSLAVSSPRLSPDQCRIVYLQYPSLI---PHH 326
Query: 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 461
L DW T ++ + + G+ F G+Y S + W +D ++
Sbjct: 327 QCSQLCLYDWYTKVTSVVVDVVPRQL-------GENFSGIYCSLLPLGCWSADSQRVVFD 379
Query: 462 SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF- 520
S S Q + +V+ G + +T S SW LLT+D D ++A S+P P +K G+
Sbjct: 380 SAQRSRQDLFAVDTQVGTVTSLTAGGSGGSWKLLTIDQDLMVAQFSTPSLPPTLKVGFLP 439
Query: 521 -VDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAI 579
K W L + PI ++ +++ P + + A FEAI
Sbjct: 440 SAGKEQSVLWVSLEEAEPIPDIHWGIR---------VLQPPPEQENVQY---AGLDFEAI 487
Query: 580 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 639
+ D + P++V+ HGGPHS ++++ A L +G+++L+VNYRGS GFG+++
Sbjct: 488 LLQPGSPPDKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDS 547
Query: 640 LQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA 699
+ SLPG VG QDV DV A++ V+ + S V ++GGSHGGF++ HLIGQ P+ + A
Sbjct: 548 ILSLPGNVGHQDVKDVQFAVEQVLQEEHFDASHVALMGGSHGGFISCHLIGQYPETYRAC 607
Query: 700 AARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK 759
ARNP+ N+A M+G+TDIPDWC VE+ D P + KSPI +I +VK
Sbjct: 608 VARNPVINIASMLGSTDIPDWCVVEAGFPFSSDCL---PDLSVWAEMLDKSPIRYIPQVK 664
Query: 760 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 819
TP + +LG +D RVP G++Y RAL+ + V +++++P H + + + +SF+N L
Sbjct: 665 TPLLLMLGQEDRRVPFKQGMEYYRALKTRNVPVRLLLYPKSTHALSEVEVESDSFMNAVL 724
Query: 820 WFKKY 824
W + +
Sbjct: 725 WLRTH 729
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P80227|ACPH_BOVIN Acylamino-acid-releasing enzyme OS=Bos taurus GN=APEH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 339 bits (869), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 234/722 (32%), Positives = 364/722 (50%), Gaps = 64/722 (8%)
Query: 116 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP- 174
+Q +L + +F ++ + ++ V A VE G SPSG+ V+R
Sbjct: 51 TQRDLERMENIRFCRQYLVFHDGDSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAG 110
Query: 175 -ENESPIQFELWSQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232
E E+W +++ K F++ HG VY D F +SW+ ET + YVAE+ P
Sbjct: 111 STGEEKQFLEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVAEKKRPK 170
Query: 233 KPTFSLGSTKG----GSSDKDCNSWKG----QGD---WEEDWGETYAGKRQPSLFVININ 281
+F TK GS D+ K +GD + EDWGE K P L V++I
Sbjct: 171 AESFF--QTKALDISGSDDEMARPKKPDQAIKGDQFLFYEDWGENMVSKGSPVLCVLDIE 228
Query: 282 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 341
SG + ++G+P+S+S GQ WAP + G+ VF GW E +LGI++C NR ALY V
Sbjct: 229 SGNISVLEGVPESVSPGQAFWAPGDTGV----VFAGWWHEPFRLGIRFCTNRRSALYYVD 284
Query: 342 VSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401
++ EL S + L V + PR SPD +V+L S V H
Sbjct: 285 LT-----GGNCELL--SDDSLAVTS----------PRLSPDQCRIVYLQFPSLV---PHQ 324
Query: 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 461
L DW T ++ + + G+ F G+Y S + W +D ++
Sbjct: 325 QCGQLCLYDWYTRVTVVVVDVVPRQL-------GENFSGIYCSLLPLGCWSADSQRVVFD 377
Query: 462 SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF- 520
+ S Q + +V+ G + +T S SW LLT+D D ++A S+P P +K G+
Sbjct: 378 TAQRSRQDLFAVDTQMGTVTPLTAGGSGGSWKLLTIDRDLMVAQFSTPNLPPCLKVGFLP 437
Query: 521 -VDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAI 579
+ W L + PI ++ +++ P + A FEAI
Sbjct: 438 PAGMEQEVVWVSLEEAEPIPDISWSIR---------VLQPPPEQEHAQYVG---LDFEAI 485
Query: 580 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 639
+ S+ D + P++V+ HGGPHS ++S+ A L +G++ L+VNYRGS GFG+++
Sbjct: 486 LIQPSNPPDKTQVPMVVMPHGGPHSSFVTSWMLLPAMLCKMGFAALLVNYRGSTGFGQDS 545
Query: 640 LQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA 699
+ SLPG VGSQDV DV A++ V+ + +V ++GGSHGGFL+ HLIGQ P+ + A
Sbjct: 546 ILSLPGNVGSQDVKDVQFAVEQVLQEEHFDAGRVALLGGSHGGFLSCHLIGQYPETYGAC 605
Query: 700 AARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK 759
RNP+ N+A M+G+TDIPDWC VE+ D + P+V + +KSPI + +VK
Sbjct: 606 VVRNPVINIASMMGSTDIPDWCVVEAGYLYSSDCLPD-PNV--WSEMLNKSPIKYTPQVK 662
Query: 760 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 819
TP + +LG +D RVP G++Y RAL+ + V +++++P H + + + +SF+N +
Sbjct: 663 TPVLLMLGQEDRRVPFKQGMEYYRALKARNVPVRLLLYPKSTHSLSEVEVESDSFMNAVI 722
Query: 820 WF 821
W
Sbjct: 723 WM 724
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P39839|YUXL_BACSU Uncharacterized peptidase YuxL OS=Bacillus subtilis (strain 168) GN=yuxL PE=3 SV=3 | Back alignment and function description |
|---|
Score = 136 bits (343), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 14/237 (5%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
PLI+ +HGGPH + +Y L++ GY+++ +N RGS G+G+E + ++ G G +D
Sbjct: 431 PLILNIHGGPHMMYGHTYFHEFQVLAAKGYAVVYINPRGSHGYGQEFVNAVRGDYGGKDY 490
Query: 653 NDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711
+DV+ A+D I +P ++ V GGS+GGF+T ++GQ ++F AA + + N
Sbjct: 491 DDVMQAVDEAIKRDPHIDPKRLGVTGGSYGGFMTNWIVGQT-NRFKAAVTQRSISNWISF 549
Query: 712 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 771
G +DI G D E ED + +SP+ + + V+TP + L G +D
Sbjct: 550 HGVSDI---------GYFFTDWQLEHDMFEDTEKLWDRSPLKYAANVETPLLILHGERDD 600
Query: 772 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIER---PQSDFESFLNIGLWFKKYC 825
R P+ Q AL++ G ETK++ FPN H + R P+ + I WF ++
Sbjct: 601 RCPIEQAEQLFIALKKMGKETKLVRFPNASHNLSRTGHPRQRIKRLNYISSWFDQHL 657
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P34422|DPF6_CAEEL Dipeptidyl peptidase family member 6 OS=Caenorhabditis elegans GN=dpf-6 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 110 bits (276), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 118/235 (50%), Gaps = 13/235 (5%)
Query: 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653
+IV++HGGP + +S A+L++ GYS+L VN+RGS GFG+ + G+ G +
Sbjct: 431 MIVLVHGGPKARDHYGFSPMNAWLTNRGYSVLQVNFRGSTGFGKRLTNAGNGEWGRKMHF 490
Query: 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 713
D+L A++ + G+AN S+V V+GGS+GG+ T + P F NL +V
Sbjct: 491 DILDAVEFAVSKGIANRSEVAVMGGSYGGYETLVALTFTPQTFACGVDIVGPSNLISLVQ 550
Query: 714 TTDIPDWC-----YVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 768
P W ++ G+ D E S+SP+ +V P + + GA
Sbjct: 551 AIP-PYWLGFRKDLIKMVGADISDE-------EGRQSLQSRSPLFFADRVTKPIMIIQGA 602
Query: 769 QDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823
D RV + Q+ AL +K + +++P++ HG+ +PQ+ E +I + ++
Sbjct: 603 NDPRVKQAESDQFVAALEKKHIPVTYLLYPDEGHGVRKPQNSMEQHGHIETFLQQ 657
|
Removes N-terminal dipeptides sequentially from polypeptides (By similarity). Essential for control of distal tip cell migration. Caenorhabditis elegans (taxid: 6239) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: - |
| >sp|Q95WU5|DPP_GIAIN Dipeptidyl-peptidase 4 OS=Giardia intestinalis GN=DPP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 80.1 bits (196), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 109/253 (43%), Gaps = 18/253 (7%)
Query: 580 FVSSSHKKDCSCDPLIVVLHGGPHS--VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGE 637
+ + ++ +D PLI+ +HGGP S + SY + +++ GY +L N+ GS FGE
Sbjct: 518 YFAPANLRDSHEYPLILYVHGGPESPWANSWSYRWNPQLIAARGYGVLATNFHGSSSFGE 577
Query: 638 EALQSLPGKVGSQDVNDVLTAIDHVI---DMGLANPSKVTVVGGSHGGFLTTHL---IGQ 691
+S+ G S + D++ A ++ D + KV +G S G ++ +
Sbjct: 578 VFQKSVRGNWYSYPLEDIMDAWSNIYTHADKAYLSREKVCAMGASFGATFMNYMNSHVNN 637
Query: 692 APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP 751
+ +CN AL P V G F V++ + +P
Sbjct: 638 VTCYVTHDGVFDTMCN-ALETDELFFP----VRELGG-----FLLDEQVDNQQLYEKWNP 687
Query: 752 ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 811
+ + P + + G +D R+ V +G+ +ALR +G++TK++ FP H + +PQ
Sbjct: 688 ARFVENMSAPMLVIHGQKDYRIQVYHGISLFQALRLRGIKTKLVYFPTQSHWVWQPQESL 747
Query: 812 ESFLNIGLWFKKY 824
+ W Y
Sbjct: 748 FWHTQVFDWLDTY 760
|
May be involved in metabolism of dipeptides or may affect host defense mechanisms. Giardia intestinalis (taxid: 5741) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: - |
| >sp|Q9YBQ2|APEH_AERPE Acylamino-acid-releasing enzyme OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_1547.1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 96/212 (45%), Gaps = 14/212 (6%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
P +V++HGGP + S+ A L++ G+ +++ NYRGS G+GEE + G ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
DV A + GLA S++ ++G S+GG++T + P F A A
Sbjct: 421 EDVSAAARWARESGLA--SELYIMGYSYGGYMTLCALTMKPGLFKAGVA----------- 467
Query: 713 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 772
+ DW + +F E + S+SPI+H+ ++K P + D R
Sbjct: 468 -GASVVDWEEMYELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSR 526
Query: 773 VPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
P+ L+ L +G + + P+ H I
Sbjct: 527 TPLKPLLRLMGELLARGKTFEAHIIPDAGHAI 558
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|Q5BA58|DPP5_EMENI Probable dipeptidyl-peptidase 5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=dpp5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 76.3 bits (186), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 13/237 (5%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSL--AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650
PL ++HGGP +S+S + GY ++ N GS G+G+E ++ G
Sbjct: 469 PLAFLIHGGPQGAWYNSWSSRWNPKVFADQGYVVVAPNPTGSTGYGDELTDAIQNNWGGA 528
Query: 651 DVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQAPDK-FVAAAARNPLCNL 708
D++ A ++V D + + + G S+GGF+ + G + F A +
Sbjct: 529 PYEDLVKAWEYVRDNLDYVDTDRGVAAGASYGGFMVNWIQGSDLGREFKALVTHDGTFVA 588
Query: 709 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 768
+ T ++ W + D V D R S I + TP + +
Sbjct: 589 DAKISTEEL--WFMEREFNGTFWD-------VRDNYRRFDPSAPERILRFATPHLIIHND 639
Query: 769 QDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825
D R+PV+ GL L+E+GV ++ + FP++ H + P++ + W KY
Sbjct: 640 LDYRLPVAEGLSLFNVLQERGVPSRFLNFPDENHWVTSPENSLVWHQQVLGWLNKYS 696
|
Extracellular dipeptidyl-peptidase which removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini. Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 826 | ||||||
| 359477374 | 822 | PREDICTED: acylamino-acid-releasing enzy | 0.980 | 0.985 | 0.734 | 0.0 | |
| 356536605 | 766 | PREDICTED: acylamino-acid-releasing enzy | 0.910 | 0.981 | 0.734 | 0.0 | |
| 255551973 | 771 | acylamino-acid-releasing enzyme, putativ | 0.929 | 0.996 | 0.739 | 0.0 | |
| 356534785 | 758 | PREDICTED: acylamino-acid-releasing enzy | 0.914 | 0.996 | 0.696 | 0.0 | |
| 357487227 | 832 | Acylamino-acid-releasing enzyme [Medicag | 0.911 | 0.905 | 0.727 | 0.0 | |
| 357487225 | 768 | Acylamino-acid-releasing enzyme [Medicag | 0.911 | 0.980 | 0.727 | 0.0 | |
| 357487229 | 810 | Acylamino-acid-releasing enzyme [Medicag | 0.910 | 0.928 | 0.643 | 0.0 | |
| 297804842 | 763 | hypothetical protein ARALYDRAFT_915409 [ | 0.917 | 0.993 | 0.660 | 0.0 | |
| 42566792 | 764 | acylaminoacyl-peptidase [Arabidopsis tha | 0.918 | 0.993 | 0.655 | 0.0 | |
| 115482018 | 775 | Os10g0415600 [Oryza sativa Japonica Grou | 0.918 | 0.979 | 0.623 | 0.0 |
| >gi|359477374|ref|XP_002284013.2| PREDICTED: acylamino-acid-releasing enzyme-like isoform 1 [Vitis vinifera] gi|297737147|emb|CBI26348.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1206 bits (3119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 601/818 (73%), Positives = 686/818 (83%), Gaps = 8/818 (0%)
Query: 12 TSDWCANQLLPRISPSFLSRHRHTRFTVAKPAYFSYKRLSVFLAMDASKAAPAKQVSSVL 71
TS+W + LL R PSF +R R T +P S + LS L M + ++ K+V +
Sbjct: 10 TSEWRVSSLLARFPPSFSAR----RSTPLRPFSVSARSLSTSLVMASCGSSSMKEVPLGI 65
Query: 72 DATAEEEYASLSKLLQDFTNISSIDKAWTF-NSGNGNGTQAMFSISQPNLLANKRKKFML 130
D EE YAS SKLL++FT+I+SIDKAWTF G G+QAMFSISQ NLLANKR+K +L
Sbjct: 66 DPAMEETYASQSKLLKEFTSIASIDKAWTFKRDSGGKGSQAMFSISQTNLLANKRRKQIL 125
Query: 131 STVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL 190
S ISKE+++SV FQWAPFP+EM G S +VPSPSGSKLLVVRNPENESP QFE+W SQL
Sbjct: 126 SAHISKESDHSVNFQWAPFPIEMMGVSTMVPSPSGSKLLVVRNPENESPTQFEIWGPSQL 185
Query: 191 EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS-LGSTKGGSSDKD 249
EKEF+VPQ+VHGSVY DGWFEGISWNSDETLIAYVAEEPSPSKPTF G KG S+DK+
Sbjct: 186 EKEFNVPQSVHGSVYTDGWFEGISWNSDETLIAYVAEEPSPSKPTFGGSGYKKGDSADKE 245
Query: 250 CNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 309
SWKG G+WEE WGETYAGKRQP+LFVINI SGEV AV+GI KSLS+GQV+WAPL EG
Sbjct: 246 SGSWKGLGEWEEHWGETYAGKRQPALFVINIESGEVHAVEGISKSLSIGQVIWAPLAEGF 305
Query: 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE 369
QYLVFVGWSSETRKLGIKYCYNRPCALYAVR +S+A+EL+ K + +ED VVNLT+
Sbjct: 306 SQYLVFVGWSSETRKLGIKYCYNRPCALYAVRAPFCESKANELQSKSNVNEDSTVVNLTQ 365
Query: 370 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429
SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI WPT+G IVDVIPV
Sbjct: 366 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIAWPTDGKPCPSANIVDVIPV 425
Query: 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESN 489
+ CAE FPGLY SSILSNPWLSDGCTM+LSS W S+QVI+SV+V SG + ++P +S
Sbjct: 426 MMCAEDGYFPGLYCSSILSNPWLSDGCTMILSSAWHSTQVILSVDVLSGNVSHVSPNDSG 485
Query: 490 FSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKG-TWSWLNVSSPISRCPEKVKSL 548
FSW++LTLDGDNI+AV SSP+D+P++KYG+ +K +WSWL+VS+PI RC EK++SL
Sbjct: 486 FSWNVLTLDGDNIVAVCSSPIDIPEMKYGWLAEKTTASDSWSWLDVSNPIPRCSEKIRSL 545
Query: 549 LSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS 608
LSS QFSIMKIPVK VS LTKG+ KPFEAIFVSS+ K D +CDPLIVVLHGGPHSVS S
Sbjct: 546 LSSLQFSIMKIPVKDVSDCLTKGSCKPFEAIFVSSNKKND-TCDPLIVVLHGGPHSVSSS 604
Query: 609 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668
S+SK+LAFLSS+GYSLLIVNYRGSLGFGEEALQSLPGK+GSQDVNDVLTAIDHVIDMGL
Sbjct: 605 SFSKNLAFLSSLGYSLLIVNYRGSLGFGEEALQSLPGKIGSQDVNDVLTAIDHVIDMGLC 664
Query: 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 728
+PSK+ VVGGSHGGFLT+HLIGQAPDKF AA RNP+CNLALMVGTTDIPDWC+VE+YGS
Sbjct: 665 DPSKIAVVGGSHGGFLTSHLIGQAPDKFAVAAVRNPVCNLALMVGTTDIPDWCFVEAYGS 724
Query: 729 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 788
+GK+SFTE+PS E LT HSKSP+SHI KVKTPT+FLLGAQDLRVPVSNGL YAR L+EK
Sbjct: 725 QGKNSFTEAPSAEQLTLLHSKSPVSHIHKVKTPTLFLLGAQDLRVPVSNGLHYARELKEK 784
Query: 789 GVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826
GVE KVI+FPNDVH IERPQSDFESFLNIG+WFKKYC+
Sbjct: 785 GVEVKVIIFPNDVHAIERPQSDFESFLNIGVWFKKYCE 822
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536605|ref|XP_003536827.1| PREDICTED: acylamino-acid-releasing enzyme-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1158 bits (2995), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/762 (73%), Positives = 658/762 (86%), Gaps = 10/762 (1%)
Query: 73 ATAEEEYASLSKLLQDFTNISSIDKAWTFNS----GNGNGTQAMFSISQPNLLANKRKKF 128
A AE+EYA S LLQ+FT IS+IDKAW F S + + + AMF +SQPNLL NKRKK
Sbjct: 7 AAAEQEYALHSTLLQEFTAISAIDKAWLFKSHTHTASASSSHAMFCVSQPNLLVNKRKKS 66
Query: 129 MLS-TVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ 187
++S T++++ + +SVTFQWAPFP++++G SA+VPSPSGSKLL+VRNPE++ P +FE+WS
Sbjct: 67 IVSATILTQNDASSVTFQWAPFPIQVSGVSAMVPSPSGSKLLIVRNPESDGPCRFEIWSS 126
Query: 188 SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL--GSTKGGS 245
SQL+KEFH+P + HGSVY DGWFEGISWNSDET IAYVAEEP+P+KPTF+ G K GS
Sbjct: 127 SQLQKEFHIPPSKHGSVYTDGWFEGISWNSDETCIAYVAEEPAPTKPTFNDLGGYKKAGS 186
Query: 246 SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 305
S+KDC +WKGQG+WEEDWGETYAGKRQP+ FVININSGEVQAVKGI KSLSVGQVVWAP
Sbjct: 187 SEKDCGTWKGQGEWEEDWGETYAGKRQPAPFVININSGEVQAVKGIDKSLSVGQVVWAPS 246
Query: 306 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV 365
EG Q+LVFVGW+ ETRKLGIKYCYNRPCALY V+ ++S+A+E E+ S+ED+ V
Sbjct: 247 TEGSAQHLVFVGWTFETRKLGIKYCYNRPCALYVVKAPHHESKANETEIH--STEDVQAV 304
Query: 366 NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 425
NLT++ISSAFFPRFSPDGKFLVF+SA+SSVDSG HSATDSLHRIDWP + KI +
Sbjct: 305 NLTQTISSAFFPRFSPDGKFLVFVSARSSVDSGVHSATDSLHRIDWPEDSKLYKSAKIHE 364
Query: 426 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 485
VIPVV AE FPGLY S+ILS+PWLSDG T++++SIW SSQV++S+NV SGELLRITP
Sbjct: 365 VIPVVLFAEDGGFPGLYCSTILSDPWLSDGYTLVIASIWHSSQVLLSINVLSGELLRITP 424
Query: 486 AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA-NKGTWSWLNVSSPISRCPEK 544
A+SNFSWSLL LDG+NI+AVSSSPVDVPQ+KYG V KA N WSW +V++PI +C +K
Sbjct: 425 ADSNFSWSLLALDGNNILAVSSSPVDVPQIKYGAIVKKAANNKEWSWSDVANPIFKCSDK 484
Query: 545 VKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHS 604
V+SL+SS FSIMKI VK +SA+LTKGA +P+EAIFVSS KK + DPLIVVLHGGPH+
Sbjct: 485 VRSLISSLTFSIMKISVKDISASLTKGASQPYEAIFVSSKTKKSDALDPLIVVLHGGPHT 544
Query: 605 VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 664
VSLSS+SK LA+LSS+GYSLLIVNYRGSLGFGEEALQSLPGK GSQDVNDVLTAIDHVI+
Sbjct: 545 VSLSSFSKPLAYLSSLGYSLLIVNYRGSLGFGEEALQSLPGKAGSQDVNDVLTAIDHVIN 604
Query: 665 MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 724
+GLA+PSK+ V+GGSHGGFLTTHLIGQAP+KFVAAAARNP+CNLALMVGTTDIPDWCYVE
Sbjct: 605 LGLASPSKIAVLGGSHGGFLTTHLIGQAPEKFVAAAARNPVCNLALMVGTTDIPDWCYVE 664
Query: 725 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARA 784
+YG+KG+D FTE+PS EDLT F+SKSPI+H+SKVKTPTIFLLGAQDLRVP+S GLQYARA
Sbjct: 665 TYGTKGRDKFTEAPSAEDLTLFYSKSPIAHLSKVKTPTIFLLGAQDLRVPISTGLQYARA 724
Query: 785 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826
LREKG + KVIVFPNDVHGIERPQSDFES+LNI +WF KYCK
Sbjct: 725 LREKGGQVKVIVFPNDVHGIERPQSDFESYLNIAMWFNKYCK 766
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255551973|ref|XP_002517031.1| acylamino-acid-releasing enzyme, putative [Ricinus communis] gi|223543666|gb|EEF45194.1| acylamino-acid-releasing enzyme, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1153 bits (2982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/774 (73%), Positives = 655/774 (84%), Gaps = 6/774 (0%)
Query: 56 MDASKAAPAKQVSSVLDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSI 115
MDASKA +++ +DA+ EEEYAS SKLLQ+FT+IS IDKAWTFNS +QA+FSI
Sbjct: 1 MDASKAVSSRESPLGIDASTEEEYASQSKLLQEFTSISRIDKAWTFNSNTDMCSQAIFSI 60
Query: 116 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE 175
SQ NLL NKR+KFMLS ISK+ SV FQWAPFP+EMTG S +VPSPSGSKLLV+RNPE
Sbjct: 61 SQANLLVNKRRKFMLSASISKQVSGSVNFQWAPFPIEMTGVSTMVPSPSGSKLLVIRNPE 120
Query: 176 NESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235
NESP FE+WSQ Q+EKEFHVPQ+VHGSVY DGWFEGISWNSDETL+A+VAEEPSP KP
Sbjct: 121 NESPTHFEIWSQGQMEKEFHVPQSVHGSVYTDGWFEGISWNSDETLVAFVAEEPSPPKPV 180
Query: 236 FS-LGSTKG-GSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK 293
FS LG G + DKD NSWKGQG+WEE WGETYAGKRQ +LFVI+ +SGEV+ VKGI K
Sbjct: 181 FSGLGYKTGEANKDKDYNSWKGQGEWEEGWGETYAGKRQSALFVISTSSGEVKPVKGIAK 240
Query: 294 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 353
SLSVGQVVWAP + +Q LVFVGWS++ RKLGIKYCYNRPCALYAV+ +Y+SE SE E
Sbjct: 241 SLSVGQVVWAPSTKDSYQCLVFVGWSADPRKLGIKYCYNRPCALYAVQAPVYRSE-SEFE 299
Query: 354 LKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413
LK++ E P +NLT+SISSAF P FSP G+ LVFLSAKSSVDSGAH T SLHRIDWP
Sbjct: 300 LKDNPIEGSPALNLTQSISSAFLPLFSPVGRLLVFLSAKSSVDSGAHMGTGSLHRIDWPV 359
Query: 414 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473
NG SSL KIVDV+PVVQCAE CFPGLY S LSNPWLSDGCTM+LSS+W S +V++S+
Sbjct: 360 NG--SSLPKIVDVVPVVQCAEDGCFPGLYCSGFLSNPWLSDGCTMILSSVWHSCEVLLSI 417
Query: 474 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANK-GTWSWL 532
NV SG++ RI+P +S FSW++L LDGDNIIAVSSSPVD+P ++YG V K + TW+WL
Sbjct: 418 NVLSGDVKRISPIDSKFSWNVLALDGDNIIAVSSSPVDMPGIRYGSLVSKTTENATWNWL 477
Query: 533 NVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCD 592
+ SSPI RC E+V+SLLSSR F I+KIPVK VS TK A KPFEAI VSS KK+ + D
Sbjct: 478 DASSPIFRCSEEVRSLLSSRHFDILKIPVKDVSGCPTKSASKPFEAIIVSSYSKKNGASD 537
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
PLIV+LHGGPHSVS SS+SKSLAFLSS+GYSLLIVNYRGS+GFGEEALQSLPGKVGSQDV
Sbjct: 538 PLIVMLHGGPHSVSSSSFSKSLAFLSSLGYSLLIVNYRGSIGFGEEALQSLPGKVGSQDV 597
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
NDVLTAIDHVID G+A+PS + V+GGSHGGFLTTHLIGQ+P KFVAAAARNP+CNLA MV
Sbjct: 598 NDVLTAIDHVIDTGIASPSSIAVLGGSHGGFLTTHLIGQSPHKFVAAAARNPVCNLASMV 657
Query: 713 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 772
GTTDIPDWCYVE+YG+ GK FTE+PS +DL FHSKSPISHISKVK PTIFL+GAQDLR
Sbjct: 658 GTTDIPDWCYVEAYGTGGKSKFTEAPSADDLALFHSKSPISHISKVKAPTIFLIGAQDLR 717
Query: 773 VPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826
VP+SNGLQYARAL+EKGVE K+++FP+DVHGIERPQSDFESFLNIG+WFKKYCK
Sbjct: 718 VPMSNGLQYARALKEKGVEVKILLFPDDVHGIERPQSDFESFLNIGVWFKKYCK 771
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534785|ref|XP_003535932.1| PREDICTED: acylamino-acid-releasing enzyme-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1095 bits (2831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/759 (69%), Positives = 625/759 (82%), Gaps = 4/759 (0%)
Query: 71 LDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFML 130
+ E++YA LS LLQDFT I +IDKAW F+S G+ Q MF +SQP+LL NKR+ ++
Sbjct: 1 MHKETEDDYAYLSNLLQDFTIIPNIDKAWLFSSP-GSQLQGMFVVSQPDLLTNKRRTSIM 59
Query: 131 STVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL 190
S I K++++SV F WAPFP+EM+G S +VPSPSGSKLLV+RNPENE+P FE+WS S++
Sbjct: 60 SCNILKQSDSSVKFLWAPFPIEMSGVSMIVPSPSGSKLLVIRNPENEAPCCFEIWSSSRM 119
Query: 191 EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL--GSTKGGSSDK 248
EKEFH+PQ++HGSVY DGWFEG+SWN DET IAYVAEE SP+KPTF+ G KGG +DK
Sbjct: 120 EKEFHIPQSLHGSVYNDGWFEGVSWNLDETCIAYVAEESSPAKPTFNDLGGYKKGGCADK 179
Query: 249 DCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308
D WKGQGDWEEDWGETYAG+R+P+LFVININS +VQ VKGI KSLS+GQVVWAP EG
Sbjct: 180 DLGYWKGQGDWEEDWGETYAGRRRPALFVININSRDVQEVKGIDKSLSIGQVVWAPFTEG 239
Query: 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT 368
QYLVFVGWSS+ RKLGIKYC NRPCALY VRV E+ E S+E+ +NLT
Sbjct: 240 SEQYLVFVGWSSKPRKLGIKYCSNRPCALYTVRVRALHHESKPNEPVVQSTEEFHALNLT 299
Query: 369 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 428
++ISSAFFPRFSPDGKFLVFLSA+S+VDSG H+AT+SLHRIDWPT+G KI D+IP
Sbjct: 300 QTISSAFFPRFSPDGKFLVFLSARSAVDSGVHNATNSLHRIDWPTDGKLFQSSKIYDIIP 359
Query: 429 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 488
VV CAE CFPGLY ++I +NPWLSD CTM++SSIW SS+V++SVNV SGE+L I+PA+S
Sbjct: 360 VVMCAEDGCFPGLYCTTIHNNPWLSDNCTMIISSIWHSSEVLLSVNVLSGEILHISPADS 419
Query: 489 NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGT-WSWLNVSSPISRCPEKVKS 547
NFSW+LLTLD +NI+A+SSSPVDVPQ+KYG ++KA T WSW N+SSPI RC +KV S
Sbjct: 420 NFSWNLLTLDRNNIVAISSSPVDVPQIKYGMAIEKATSNTTWSWSNISSPIFRCSDKVVS 479
Query: 548 LLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL 607
LLSS Q SI+ I VK V TKGA K FEAIFV+S K DPLIV+LHGGPH VSL
Sbjct: 480 LLSSLQCSILSISVKDVHDGQTKGATKHFEAIFVTSKTKNKDVFDPLIVILHGGPHDVSL 539
Query: 608 SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667
S +SK LAF SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL+AIDHVI++GL
Sbjct: 540 SHFSKYLAFQSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLSAIDHVINLGL 599
Query: 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 727
A+PSK+TV+G SHGGFLTTHLIGQAPDKFVAAAA NP+CNLALM+GTTDIPDWCYVE+ G
Sbjct: 600 ASPSKITVMGISHGGFLTTHLIGQAPDKFVAAAAINPVCNLALMIGTTDIPDWCYVEACG 659
Query: 728 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE 787
+ K+ FTE PS +DLT F SKSPISH+SKVK PT+FLLGAQD+RVP+ +GLQYARAL+E
Sbjct: 660 TIAKNCFTEPPSADDLTLFQSKSPISHVSKVKAPTLFLLGAQDIRVPIFDGLQYARALKE 719
Query: 788 KGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826
KGVE K+I+F NDVH ++RPQSD E FL+IG+WF KYCK
Sbjct: 720 KGVEVKIIMFQNDVHALKRPQSDLECFLHIGVWFNKYCK 758
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357487227|ref|XP_003613901.1| Acylamino-acid-releasing enzyme [Medicago truncatula] gi|355515236|gb|AES96859.1| Acylamino-acid-releasing enzyme [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1094 bits (2829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/759 (72%), Positives = 642/759 (84%), Gaps = 6/759 (0%)
Query: 71 LDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAM-FSISQPNLLANKRKKFM 129
+D E++Y+ S LLQ FT+ISSIDK+W FNS + +Q M FS+SQPNLLANK++KF+
Sbjct: 77 IDEETEQQYSLHSNLLQQFTSISSIDKSWIFNSNTDSSSQGMMFSVSQPNLLANKKRKFI 136
Query: 130 LSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ 189
LS+ ++K ++ SV WAPFPVEMTG S +VPSPSGSKLL+VRNPE + +FE+WS S
Sbjct: 137 LSSTVNKRSDGSVGLDWAPFPVEMTGVSVMVPSPSGSKLLIVRNPEGDGGCKFEIWSNSC 196
Query: 190 LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS-LGSTKGGSSDK 248
LE EF VPQ+ HGSVYADGWFEGISWNSDET IAYVAEEPSP+KPTF+ G GS DK
Sbjct: 197 LENEFSVPQSKHGSVYADGWFEGISWNSDETRIAYVAEEPSPAKPTFNDQGYKVSGSDDK 256
Query: 249 DCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308
D +SWKGQGDWEEDWGETYAGKRQP+LFVINI SGEVQAVKGI KSLSVGQVVWAP +EG
Sbjct: 257 DSSSWKGQGDWEEDWGETYAGKRQPALFVINITSGEVQAVKGIDKSLSVGQVVWAPSSEG 316
Query: 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT 368
QYLVFVGWS ETRKLGIKYCYNR CALYAV+ ++S+ +E E++ ++ED+ + LT
Sbjct: 317 SAQYLVFVGWSYETRKLGIKYCYNRACALYAVKAP-HESKPNENEIQ--ATEDVQALKLT 373
Query: 369 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 428
++ISSAF PRFSPDG FLVFLSA+SSVDSGAHSAT+SLHRIDWP + K+ DVIP
Sbjct: 374 QTISSAFLPRFSPDGNFLVFLSARSSVDSGAHSATNSLHRIDWPKDVKLYQSAKVHDVIP 433
Query: 429 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 488
VV CA+ D FPGLY SSILS+PWLSDG T+++ S+W SSQV++SVNV SG++ RITPA+S
Sbjct: 434 VVLCADDDGFPGLYFSSILSDPWLSDGHTLIIPSVWHSSQVLLSVNVFSGQIKRITPADS 493
Query: 489 NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK-ANKGTWSWLNVSSPISRCPEKVKS 547
NFSWSLLTL G+NI AVSSSPVDVPQVKYG FV+K W W +VS+PI +C +KV+S
Sbjct: 494 NFSWSLLTLHGNNIFAVSSSPVDVPQVKYGTFVEKEGGNSEWRWSDVSNPIYKCSDKVRS 553
Query: 548 LLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL 607
LLSS FSIMKI VK S N TKG+ KP+E+IFVSS KK +CDPLIVVLHGGPHSVSL
Sbjct: 554 LLSSLTFSIMKISVKEASENPTKGSCKPYESIFVSSKTKKSDACDPLIVVLHGGPHSVSL 613
Query: 608 SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667
SS+SKS AFLSS+GYSLLIVNYRGSLGFGEEALQSLPG +GSQDVNDVL+AIDHVID+GL
Sbjct: 614 SSFSKSQAFLSSLGYSLLIVNYRGSLGFGEEALQSLPGNIGSQDVNDVLSAIDHVIDLGL 673
Query: 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 727
A+PSK+ V+GGSHGGFLTTHLIGQAP+KFVAAAARNP+CNL LMVGTTDIPDWC+VESYG
Sbjct: 674 ASPSKIAVLGGSHGGFLTTHLIGQAPEKFVAAAARNPVCNLELMVGTTDIPDWCFVESYG 733
Query: 728 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE 787
+ G+D TE+PS EDLT F+SKSPI+H+SKVKTPT+FLLGAQDLRVP+S GLQYARAL+E
Sbjct: 734 TNGRDRITEAPSAEDLTLFYSKSPIAHLSKVKTPTVFLLGAQDLRVPISTGLQYARALKE 793
Query: 788 KGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826
KGV KVI+FPNDVHGI+RPQSDFESFL+I WF KYCK
Sbjct: 794 KGVPVKVILFPNDVHGIDRPQSDFESFLSIAAWFNKYCK 832
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357487225|ref|XP_003613900.1| Acylamino-acid-releasing enzyme [Medicago truncatula] gi|355515235|gb|AES96858.1| Acylamino-acid-releasing enzyme [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1093 bits (2827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/759 (72%), Positives = 642/759 (84%), Gaps = 6/759 (0%)
Query: 71 LDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAM-FSISQPNLLANKRKKFM 129
+D E++Y+ S LLQ FT+ISSIDK+W FNS + +Q M FS+SQPNLLANK++KF+
Sbjct: 13 IDEETEQQYSLHSNLLQQFTSISSIDKSWIFNSNTDSSSQGMMFSVSQPNLLANKKRKFI 72
Query: 130 LSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ 189
LS+ ++K ++ SV WAPFPVEMTG S +VPSPSGSKLL+VRNPE + +FE+WS S
Sbjct: 73 LSSTVNKRSDGSVGLDWAPFPVEMTGVSVMVPSPSGSKLLIVRNPEGDGGCKFEIWSNSC 132
Query: 190 LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS-LGSTKGGSSDK 248
LE EF VPQ+ HGSVYADGWFEGISWNSDET IAYVAEEPSP+KPTF+ G GS DK
Sbjct: 133 LENEFSVPQSKHGSVYADGWFEGISWNSDETRIAYVAEEPSPAKPTFNDQGYKVSGSDDK 192
Query: 249 DCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308
D +SWKGQGDWEEDWGETYAGKRQP+LFVINI SGEVQAVKGI KSLSVGQVVWAP +EG
Sbjct: 193 DSSSWKGQGDWEEDWGETYAGKRQPALFVINITSGEVQAVKGIDKSLSVGQVVWAPSSEG 252
Query: 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT 368
QYLVFVGWS ETRKLGIKYCYNR CALYAV+ ++S+ +E E++ ++ED+ + LT
Sbjct: 253 SAQYLVFVGWSYETRKLGIKYCYNRACALYAVKAP-HESKPNENEIQ--ATEDVQALKLT 309
Query: 369 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 428
++ISSAF PRFSPDG FLVFLSA+SSVDSGAHSAT+SLHRIDWP + K+ DVIP
Sbjct: 310 QTISSAFLPRFSPDGNFLVFLSARSSVDSGAHSATNSLHRIDWPKDVKLYQSAKVHDVIP 369
Query: 429 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 488
VV CA+ D FPGLY SSILS+PWLSDG T+++ S+W SSQV++SVNV SG++ RITPA+S
Sbjct: 370 VVLCADDDGFPGLYFSSILSDPWLSDGHTLIIPSVWHSSQVLLSVNVFSGQIKRITPADS 429
Query: 489 NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK-ANKGTWSWLNVSSPISRCPEKVKS 547
NFSWSLLTL G+NI AVSSSPVDVPQVKYG FV+K W W +VS+PI +C +KV+S
Sbjct: 430 NFSWSLLTLHGNNIFAVSSSPVDVPQVKYGTFVEKEGGNSEWRWSDVSNPIYKCSDKVRS 489
Query: 548 LLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL 607
LLSS FSIMKI VK S N TKG+ KP+E+IFVSS KK +CDPLIVVLHGGPHSVSL
Sbjct: 490 LLSSLTFSIMKISVKEASENPTKGSCKPYESIFVSSKTKKSDACDPLIVVLHGGPHSVSL 549
Query: 608 SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667
SS+SKS AFLSS+GYSLLIVNYRGSLGFGEEALQSLPG +GSQDVNDVL+AIDHVID+GL
Sbjct: 550 SSFSKSQAFLSSLGYSLLIVNYRGSLGFGEEALQSLPGNIGSQDVNDVLSAIDHVIDLGL 609
Query: 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 727
A+PSK+ V+GGSHGGFLTTHLIGQAP+KFVAAAARNP+CNL LMVGTTDIPDWC+VESYG
Sbjct: 610 ASPSKIAVLGGSHGGFLTTHLIGQAPEKFVAAAARNPVCNLELMVGTTDIPDWCFVESYG 669
Query: 728 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE 787
+ G+D TE+PS EDLT F+SKSPI+H+SKVKTPT+FLLGAQDLRVP+S GLQYARAL+E
Sbjct: 670 TNGRDRITEAPSAEDLTLFYSKSPIAHLSKVKTPTVFLLGAQDLRVPISTGLQYARALKE 729
Query: 788 KGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826
KGV KVI+FPNDVHGI+RPQSDFESFL+I WF KYCK
Sbjct: 730 KGVPVKVILFPNDVHGIDRPQSDFESFLSIAAWFNKYCK 768
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357487229|ref|XP_003613902.1| Acylamino-acid-releasing enzyme [Medicago truncatula] gi|355515237|gb|AES96860.1| Acylamino-acid-releasing enzyme [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1007 bits (2603), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/807 (64%), Positives = 619/807 (76%), Gaps = 55/807 (6%)
Query: 72 DATAEEE-YASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFML 130
DAT E+E YASLS LL FT I +I KAW FNS N TQ MFSI+QP++L NK K +L
Sbjct: 7 DATTEKENYASLSNLLPHFTTIPNIHKAWLFNSHTTN-TQGMFSITQPDVLTNKNKTLIL 65
Query: 131 ST--VISKENENSVTFQWAPFPVEMTG-ASAVVPSPSGSKLLVVRNPENES--PIQFELW 185
S V K + + V F WAPFP+EM G S +VPSPSGSKLLV+RN ++E FE+W
Sbjct: 66 SCNFVKQKSDGSVVEFLWAPFPIEMRGDVSMIVPSPSGSKLLVIRNSDSEGGGSCCFEIW 125
Query: 186 SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS-LGSTKGG 244
S S LEKEF +PQ++HGSVY DGWFEG+SWN DETLIAYVAE PSP+KP F+ G KGG
Sbjct: 126 SSSCLEKEFSIPQSMHGSVYNDGWFEGVSWNLDETLIAYVAEAPSPTKPVFNNTGYKKGG 185
Query: 245 SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP 304
++ D WKGQG+WEEDWGETYA KRQP+LFVININSGEVQAVKGI KSLS GQVVWAP
Sbjct: 186 CAENDFGIWKGQGEWEEDWGETYAAKRQPTLFVININSGEVQAVKGIDKSLSAGQVVWAP 245
Query: 305 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV 364
EG QYLVFVGWSS TRKLG+KYC NRPCALYAVR ++S++ E E SS+E+L
Sbjct: 246 FTEGSEQYLVFVGWSSGTRKLGMKYCSNRPCALYAVRAPHHESQSEEPE-HHSSTEELHA 304
Query: 365 VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 424
+NLT +ISSA FPRFSP+GKFLVFLSAKS+V+SG H+AT+SLHRIDWPT+G I
Sbjct: 305 LNLTPTISSALFPRFSPNGKFLVFLSAKSAVNSGVHNATNSLHRIDWPTDGKLYQSANIY 364
Query: 425 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484
D+IPVV CAE CFPGLY +++ +NPWLSD CTM+LSSIW S +V++SVNV SG++LRI+
Sbjct: 365 DIIPVVMCAEDGCFPGLYCTTVHNNPWLSDNCTMILSSIWHSCEVLLSVNVLSGKILRIS 424
Query: 485 PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGT--WSWLNVSSPISRCP 542
PA+SNFSW+LLTLD DNI+A+SS+PV+VPQ+ YG ++K KG WSW +SSPI +C
Sbjct: 425 PADSNFSWNLLTLDEDNILAISSNPVNVPQIMYGMAIEKT-KGNSIWSWSKISSPILKCS 483
Query: 543 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 602
+KV+SLLSS Q SI+KIPV S+N TKGA KPFEAIFVSS K DPLIV+LHGGP
Sbjct: 484 DKVRSLLSSIQCSILKIPVTDGSSNTTKGAAKPFEAIFVSSKTKNKDVFDPLIVILHGGP 543
Query: 603 HSVSLSSYSKSLAFLSSVGYSL-------------------------------LIVNY-- 629
VS S +S S AFLSSVGYSL +I+++
Sbjct: 544 QDVSSSHFSNSWAFLSSVGYSLDLVGTCILQHQNHSIKACLEKKRKTKNTAPCIIISFKD 603
Query: 630 ----------RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGS 679
RGSLGFGEEALQSLPGKVGSQDVNDVL+AIDHVI++G A+PSK+TV+G S
Sbjct: 604 SYKFTTLLFLRGSLGFGEEALQSLPGKVGSQDVNDVLSAIDHVINLGHASPSKITVMGIS 663
Query: 680 HGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS 739
HGGFLTTHLIGQAP+KFVAAAA NP+CNLA+MVGTTDIPDWCYVE++G+ +D F+E+PS
Sbjct: 664 HGGFLTTHLIGQAPEKFVAAAAINPVCNLAMMVGTTDIPDWCYVEAFGTTARDCFSEAPS 723
Query: 740 VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 799
EDLT F+SKSPISH+SKVK PT+FLLG QDLRVP +GLQYARAL+EKGV+ K+I+F N
Sbjct: 724 AEDLTLFYSKSPISHVSKVKAPTLFLLGGQDLRVPKFDGLQYARALKEKGVDVKIIMFQN 783
Query: 800 DVHGIERPQSDFESFLNIGLWFKKYCK 826
DVH ++RPQS++E LNIG+WF KYCK
Sbjct: 784 DVHALKRPQSEWECILNIGVWFNKYCK 810
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297804842|ref|XP_002870305.1| hypothetical protein ARALYDRAFT_915409 [Arabidopsis lyrata subsp. lyrata] gi|297316141|gb|EFH46564.1| hypothetical protein ARALYDRAFT_915409 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1002 bits (2591), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/775 (66%), Positives = 628/775 (81%), Gaps = 17/775 (2%)
Query: 56 MDASKAAPAKQVSSVLDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSI 115
MD+ AK+V LD+T EEEYA+ SKLL++F NI SIDKAW FNSG+G +QAMF++
Sbjct: 1 MDSCGTDSAKEVHVGLDSTTEEEYATQSKLLKEFINIPSIDKAWIFNSGSG--SQAMFAM 58
Query: 116 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE 175
SQ NLLANKRKKFMLS ISKE+ SV F WAPFPVEMTGASA VPSPSG KLLV+RNPE
Sbjct: 59 SQANLLANKRKKFMLSGHISKESNQSVNFHWAPFPVEMTGASAFVPSPSGLKLLVIRNPE 118
Query: 176 NESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235
NESP +FE+W+ S LEKEFH+PQ VHGSVY DGWFEGISWNSDET +AY+AEEPS KPT
Sbjct: 119 NESPTKFEIWNSSHLEKEFHIPQKVHGSVYVDGWFEGISWNSDETRVAYIAEEPSRPKPT 178
Query: 236 FS-LGSTKGGSS-DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK 293
F LG K G+S DKD SWKG+GDWEE+WGE YAGKRQP+LFVI+++SG+V+ +KGIP+
Sbjct: 179 FDHLGYYKKGNSLDKDIGSWKGEGDWEEEWGEAYAGKRQPALFVIDVDSGKVEPIKGIPR 238
Query: 294 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 353
S+SVGQVVW+P + QYLVF GW + RK GIKYCYNRPCA+YA++ + S+ E
Sbjct: 239 SISVGQVVWSPNSNESAQYLVFAGWLGDKRKFGIKYCYNRPCAIYAIK---FISD----E 291
Query: 354 LKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413
K+ ++E P+ NLT+SISS F PRFS DGKFLVF+SAKS+VDSGAH AT+SLHRIDWP+
Sbjct: 292 PKDDANE-FPIHNLTKSISSGFCPRFSKDGKFLVFVSAKSAVDSGAHWATESLHRIDWPS 350
Query: 414 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473
+G IVDVI VV C + CFPGLY + +L +PWLSDG +++LS+ W S +VI+SV
Sbjct: 351 DGKLPESTNIVDVIQVVNCPDDGCFPGLYVTGLLCDPWLSDGHSLILSTYWRSCRVILSV 410
Query: 474 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV-DKANKGTWSWL 532
N+ SGE+ R +P++S++SW+ LDGDNI+AVSSSPV VP++KYG V D A K +W W
Sbjct: 411 NLLSGEVSRASPSDSDYSWTAFALDGDNIVAVSSSPVSVPEIKYGKKVLDSAGKPSWKWS 470
Query: 533 NVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSH-KKDCSC 591
N+ +PI RC EKV S LSS QF I+K+P+ VS L +GA+KP E I+VSSS K++ C
Sbjct: 471 NIQNPI-RCSEKVMSGLSSLQFKILKVPISDVSEGLAEGAKKPIEVIYVSSSKFKENGKC 529
Query: 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
DPLI VLHGGPHS+S S+S+++A+LSS+GYS LIVNYRGSLG+GE+ALQSLPGKVGSQD
Sbjct: 530 DPLIAVLHGGPHSISPCSFSRNMAYLSSIGYSQLIVNYRGSLGYGEDALQSLPGKVGSQD 589
Query: 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711
V DVL A+D+ I+MGLA+PSK+TV+GGSHGGFLTTHLIGQAP+KFVAAAARNP+CN+A M
Sbjct: 590 VKDVLAAVDYAIEMGLADPSKITVLGGSHGGFLTTHLIGQAPNKFVAAAARNPVCNIASM 649
Query: 712 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 771
VG TDIPDWC+ E+YG ++ +TE+PS EDL+RFH SPI+HISK KTPT+FLLG+QDL
Sbjct: 650 VGITDIPDWCFFEAYGD--QNHYTEAPSSEDLSRFHQISPIAHISKAKTPTLFLLGSQDL 707
Query: 772 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826
RVP+SNG QY RAL+EKGVE KV+ FPND H ++RPQ+D+ESFLNI +WF KYCK
Sbjct: 708 RVPISNGFQYVRALKEKGVEVKVLAFPNDNHPLDRPQTDYESFLNIAVWFNKYCK 762
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42566792|ref|NP_193193.2| acylaminoacyl-peptidase [Arabidopsis thaliana] gi|60729672|pir||JC8016 acylaminoacyl-peptidase (EC 3.4.19.1) - Arabidopsis thaliana gi|30466066|dbj|BAC76411.1| acylamino acid-releasing enzyme [Arabidopsis thaliana] gi|332658061|gb|AEE83461.1| acylaminoacyl-peptidase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 999 bits (2583), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/775 (65%), Positives = 623/775 (80%), Gaps = 16/775 (2%)
Query: 56 MDASKAAPAKQVSSVLDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSI 115
MD+S AK++ LD T EEEYA+ SKLLQ+F NI SIDKAW FNS +G +QAMF++
Sbjct: 1 MDSSGTDSAKELHVGLDPTTEEEYATQSKLLQEFINIPSIDKAWIFNSDSG--SQAMFAL 58
Query: 116 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE 175
SQ NLLANK+KKFMLS IS E+ SV F WAPFP+EMTGASA VPSPSG KLLV+RNPE
Sbjct: 59 SQANLLANKKKKFMLSGHISNESNQSVNFHWAPFPIEMTGASAFVPSPSGLKLLVIRNPE 118
Query: 176 NESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235
NESP +FE+W+ SQLEKEFH+PQ VHGSVY DGWFEGISW+SDET +AYVAEEPS KPT
Sbjct: 119 NESPTKFEIWNSSQLEKEFHIPQKVHGSVYVDGWFEGISWDSDETHVAYVAEEPSRPKPT 178
Query: 236 FS-LGSTKGGSS-DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK 293
F LG K +S DK SWKG+GDWEE+WGE YAGKRQP+LFVIN++SGEV+ +KGIP+
Sbjct: 179 FDHLGYYKKENSLDKGIGSWKGEGDWEEEWGEAYAGKRQPALFVINVDSGEVEPIKGIPR 238
Query: 294 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 353
S+SVGQVVW+P + G QYLVF GW + RK GIKYCYNRPCA+YA++ + E
Sbjct: 239 SISVGQVVWSPNSNGSAQYLVFAGWLGDKRKFGIKYCYNRPCAIYAIKFT-------SDE 291
Query: 354 LKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413
K+ + + P+ NLT+SISS F PRFS DGKFLVF+SAK++VDSGAH AT+SLHRIDWP+
Sbjct: 292 PKDDDANEFPIHNLTKSISSGFCPRFSKDGKFLVFVSAKTAVDSGAHWATESLHRIDWPS 351
Query: 414 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473
+G IVDVI VV C + CFPGLY + +LS+PWLSDG +++LS+ W S +VI+SV
Sbjct: 352 DGKLPESTNIVDVIQVVNCPKDGCFPGLYVTGLLSDPWLSDGHSLMLSTYWRSCRVILSV 411
Query: 474 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY-FVDKANKGTWSWL 532
N+ SGE+ R +P++S++SW+ L LDGD+I+AVSSSPV VP++KYG +D A K +W W
Sbjct: 412 NLLSGEVSRASPSDSDYSWNALALDGDSIVAVSSSPVSVPEIKYGKKGLDSAGKPSWLWS 471
Query: 533 NVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSH-KKDCSC 591
N+ SPI R EKV + LSS QF I+K+P+ VS L +GA+ P EAI+VSSS K++ C
Sbjct: 472 NIQSPI-RYSEKVMAGLSSLQFKILKVPISDVSEGLAEGAKNPIEAIYVSSSKSKENGKC 530
Query: 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
DPLI VLHGGPHSVS S+S+++A+LSS+GYS LI+NYRGSLG+GE+ALQSLPGKVGSQD
Sbjct: 531 DPLIAVLHGGPHSVSPCSFSRTMAYLSSIGYSQLIINYRGSLGYGEDALQSLPGKVGSQD 590
Query: 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711
V D L A+DH I+MG+A+PS++TV+GGSHGGFLTTHLIGQAPDKFVAAAARNP+CN+A M
Sbjct: 591 VKDCLLAVDHAIEMGIADPSRITVLGGSHGGFLTTHLIGQAPDKFVAAAARNPVCNMASM 650
Query: 712 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 771
VG TDIPDWC+ E+YG + +TE+PS EDL+RFH SPISHISKVKTPT+FLLG +DL
Sbjct: 651 VGITDIPDWCFFEAYGDQSH--YTEAPSAEDLSRFHQMSPISHISKVKTPTLFLLGTKDL 708
Query: 772 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826
RVP+SNG QY RAL+EKGVE KV+VFPND H ++RPQ+D+ESFLNI +WF KYCK
Sbjct: 709 RVPISNGFQYVRALKEKGVEVKVLVFPNDNHPLDRPQTDYESFLNIAVWFNKYCK 763
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115482018|ref|NP_001064602.1| Os10g0415600 [Oryza sativa Japonica Group] gi|113639211|dbj|BAF26516.1| Os10g0415600 [Oryza sativa Japonica Group] gi|218184517|gb|EEC66944.1| hypothetical protein OsI_33573 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 992 bits (2564), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/775 (62%), Positives = 599/775 (77%), Gaps = 16/775 (2%)
Query: 58 ASKAAPAKQVSSVLDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQ 117
AS+AA K + +D + +EYAS SKLLQ+F I +I AW FNS N ++A+ S+ Q
Sbjct: 6 ASEAATEKGLPLGMDVSMVDEYASQSKLLQEFVKIPTIGNAWIFNSKTENTSRAIVSVGQ 65
Query: 118 PNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENE 177
+LLANK++ F+L++ ISK + NSV FQW+PFP+EM+G SAV+PSPSG KLL++RN E++
Sbjct: 66 TDLLANKKRSFLLNSHISKNSSNSVDFQWSPFPIEMSGVSAVIPSPSGRKLLLIRNSEDD 125
Query: 178 SPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 237
SP + E+W QLE E H+ Q+VHGS+Y D WFEGISWN +ETL+AYVAEEP KP F+
Sbjct: 126 SPTKLEVWGPCQLENEIHIAQSVHGSLYVDEWFEGISWNQEETLVAYVAEEPPQPKPEFN 185
Query: 238 -LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLS 296
G K GSS+KDC SWKG+GDWEE WGETY+ KR P+LFV+NI+SGEV+AVKGIP++LS
Sbjct: 186 DSGYKKAGSSEKDCKSWKGKGDWEETWGETYSKKRIPALFVVNISSGEVRAVKGIPRTLS 245
Query: 297 VGQVVWAPLNEGLHQYLVFVGWSSET------RKLGIKYCYNRPCALYAVRVSLYKSEAS 350
VGQV+WAP + LVFV WSS+ RKLGIKYC+NRPCALYAV + EA
Sbjct: 246 VGQVIWAPSSS---HSLVFVAWSSDNGYQKTPRKLGIKYCFNRPCALYAVP-DPFMEEAD 301
Query: 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 410
+ L S E P LT +SSAFFPRFSPDGK+LVF+SAKS++DSG H+AT+S+H+ID
Sbjct: 302 KPSLNVSKGETAPTTKLTSELSSAFFPRFSPDGKYLVFISAKSAIDSGTHNATNSMHKID 361
Query: 411 WPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470
WP +G L + DV+P+V C + CFPGLY S IL NPWL+DG TM+LSSIWGS +VI
Sbjct: 362 WPADGKLEGLS-VADVVPIVMCPQDGCFPGLYCSGILRNPWLTDGQTMILSSIWGSKEVI 420
Query: 471 ISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANK-GTW 529
+SVNV S E+ R++P +S++SW++L LD DNI+AVSSS + VPQ+ YG V + K W
Sbjct: 421 LSVNVVSREVSRVSPQDSDYSWNVLALDKDNILAVSSSLITVPQIYYGSEVCQTGKPNQW 480
Query: 530 SWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDC 589
W +++P +K+ ++L+ +FSI+KIP+ S L GA+ PFEAIFVS KD
Sbjct: 481 EWQEIATPFPSPSDKISAILADHKFSILKIPISNSSNKLADGAKLPFEAIFVS---WKDS 537
Query: 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649
+ P IVVLHGGPH+V SSYSKSLAFL S GY+LL+VNYRGSLGFGEEALQSLPG +GS
Sbjct: 538 ATRPTIVVLHGGPHTVYPSSYSKSLAFLYSQGYNLLVVNYRGSLGFGEEALQSLPGNIGS 597
Query: 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709
QDVNDVLTA+D VI GL + SKV VVGGSHGGFLTTHLIGQAP FVAAAARNP+CNL+
Sbjct: 598 QDVNDVLTALDFVIKKGLIDASKVAVVGGSHGGFLTTHLIGQAPGTFVAAAARNPVCNLS 657
Query: 710 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 769
LMVGTTDIP+WC+VE YG +GK+ F+E PS +DL +FH KSPISHISKV TPT+FLLGAQ
Sbjct: 658 LMVGTTDIPEWCFVEIYGKEGKNCFSEYPSFDDLCQFHQKSPISHISKVSTPTLFLLGAQ 717
Query: 770 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824
DLRVPVSNGLQYAR L+E GVETK+IVFP D+HG+++PQSDFESFLNIG+WFKK+
Sbjct: 718 DLRVPVSNGLQYARTLKEMGVETKIIVFPEDMHGLDKPQSDFESFLNIGVWFKKH 772
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 826 | ||||||
| TAIR|locus:2129920 | 764 | AARE "acylamino acid-releasing | 0.918 | 0.993 | 0.632 | 2.9e-270 | |
| UNIPROTKB|E2R7E8 | 734 | APEH "Uncharacterized protein" | 0.462 | 0.520 | 0.339 | 6.3e-89 | |
| MGI|MGI:88041 | 732 | Apeh "acylpeptide hydrolase" [ | 0.462 | 0.521 | 0.341 | 8e-89 | |
| UNIPROTKB|P80227 | 730 | APEH "Acylamino-acid-releasing | 0.509 | 0.576 | 0.331 | 1.3e-88 | |
| RGD|2125 | 732 | Apeh "N-acylaminoacyl-peptide | 0.462 | 0.521 | 0.339 | 3.5e-88 | |
| UNIPROTKB|P13676 | 732 | Apeh "Acylamino-acid-releasing | 0.462 | 0.521 | 0.339 | 3.5e-88 | |
| UNIPROTKB|I3LEU6 | 725 | I3LEU6 "Uncharacterized protei | 0.509 | 0.580 | 0.323 | 1.7e-86 | |
| UNIPROTKB|P13798 | 732 | APEH "Acylamino-acid-releasing | 0.467 | 0.527 | 0.330 | 4.4e-86 | |
| UNIPROTKB|F1SPS7 | 732 | APEH "Acylamino-acid-releasing | 0.462 | 0.521 | 0.326 | 4.4e-86 | |
| UNIPROTKB|I3LFX8 | 702 | I3LFX8 "Uncharacterized protei | 0.462 | 0.544 | 0.326 | 5.7e-86 |
| TAIR|locus:2129920 AARE "acylamino acid-releasing enzyme" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2599 (920.0 bits), Expect = 2.9e-270, P = 2.9e-270
Identities = 490/775 (63%), Positives = 594/775 (76%)
Query: 56 MDASKAAPAKQVSSVLDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSI 115
MD+S AK++ LD T EEEYA+ SKLLQ+F NI SIDKAW FNS +G+ QAMF++
Sbjct: 1 MDSSGTDSAKELHVGLDPTTEEEYATQSKLLQEFINIPSIDKAWIFNSDSGS--QAMFAL 58
Query: 116 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE 175
SQ NLLANK+KKFMLS IS E+ SV F WAPFP+EMTGASA VPSPSG KLLV+RNPE
Sbjct: 59 SQANLLANKKKKFMLSGHISNESNQSVNFHWAPFPIEMTGASAFVPSPSGLKLLVIRNPE 118
Query: 176 NESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235
NESP +FE+W+ SQLEKEFH+PQ VHGSVY DGWFEGISW+SDET +AYVAEEPS KPT
Sbjct: 119 NESPTKFEIWNSSQLEKEFHIPQKVHGSVYVDGWFEGISWDSDETHVAYVAEEPSRPKPT 178
Query: 236 FS-LGSTKGGSS-DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK 293
F LG K +S DK SWKG+GDWEE+WGE YAGKRQP+LFVIN++SGEV+ +KGIP+
Sbjct: 179 FDHLGYYKKENSLDKGIGSWKGEGDWEEEWGEAYAGKRQPALFVINVDSGEVEPIKGIPR 238
Query: 294 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYXXXXXXXX 353
S+SVGQVVW+P + G QYLVF GW + RK GIKYCYNRPCA+YA++ +
Sbjct: 239 SISVGQVVWSPNSNGSAQYLVFAGWLGDKRKFGIKYCYNRPCAIYAIKFT-------SDE 291
Query: 354 XXXXXXXDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413
+ P+ NLT+SISS F PRFS DGKFLVF+SAK++VDSGAH AT+SLHRIDWP+
Sbjct: 292 PKDDDANEFPIHNLTKSISSGFCPRFSKDGKFLVFVSAKTAVDSGAHWATESLHRIDWPS 351
Query: 414 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXX 473
+G IVDVI VV C + CFPGLY + +LS+PWLSDG +++LS+ W
Sbjct: 352 DGKLPESTNIVDVIQVVNCPKDGCFPGLYVTGLLSDPWLSDGHSLMLSTYWRSCRVILSV 411
Query: 474 XXXXGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF-VDKANKGTWSWL 532
GE+ R +P++S++SW+ L LDGD+I+AVSSSPV VP++KYG +D A K +W W
Sbjct: 412 NLLSGEVSRASPSDSDYSWNALALDGDSIVAVSSSPVSVPEIKYGKKGLDSAGKPSWLWS 471
Query: 533 NVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCS-C 591
N+ SPI R EKV + LSS QF I+K+P+ VS L +GA+ P EAI+VSSS K+ C
Sbjct: 472 NIQSPI-RYSEKVMAGLSSLQFKILKVPISDVSEGLAEGAKNPIEAIYVSSSKSKENGKC 530
Query: 592 DPLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
DPLI VLHGGPH +GYS LI+NYRGSLG+GE+ALQSLPGKVGSQD
Sbjct: 531 DPLIAVLHGGPHSVSPCSFSRTMAYLSSIGYSQLIINYRGSLGYGEDALQSLPGKVGSQD 590
Query: 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711
V D L A+DH I+MG+A+PS++TV+GGSHGGFLTTHLIGQAPDKFVAAAARNP+CN+A M
Sbjct: 591 VKDCLLAVDHAIEMGIADPSRITVLGGSHGGFLTTHLIGQAPDKFVAAAARNPVCNMASM 650
Query: 712 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 771
VG TDIPDWC+ E+YG + +TE+PS EDL+RFH SPISHISKVKTPT+FLLG +DL
Sbjct: 651 VGITDIPDWCFFEAYGDQSH--YTEAPSAEDLSRFHQMSPISHISKVKTPTLFLLGTKDL 708
Query: 772 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826
RVP+SNG QY RAL+EKGVE KV+VFPND H ++RPQ+D+ESFLNI +WF KYCK
Sbjct: 709 RVPISNGFQYVRALKEKGVEVKVLVFPNDNHPLDRPQTDYESFLNIAVWFNKYCK 763
|
|
| UNIPROTKB|E2R7E8 APEH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 616 (221.9 bits), Expect = 6.3e-89, Sum P(2) = 6.3e-89
Identities = 135/398 (33%), Positives = 211/398 (53%)
Query: 423 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 482
+VDV+P Q E F G+Y S + W +D ++ S G +
Sbjct: 346 VVDVVPR-QLGEN--FSGIYCSLLPLGCWSADSQRVVFDSAQRSRQDLFVVDTQMGSVTS 402
Query: 483 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 542
+T S SW LLT+D D ++A S+P P +K G+ + T W+++
Sbjct: 403 LTAGGSGGSWKLLTIDRDLMVAQFSTPSLPPSLKVGFLPPAGKEQTVLWVSLEEA----- 457
Query: 543 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 602
E + + S +++ P + + A FEAI + S+ D + P++V+ HGGP
Sbjct: 458 EPISDI--SWAIRVLQPPPEQENVQF---AGLDFEAILLQPSNPPDKTQVPMVVMPHGGP 512
Query: 603 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 662
H +G+++L+VNYRGS GFG++++ SLPGKVG QDV DV A++ V
Sbjct: 513 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGKVGHQDVKDVQFAVEQV 572
Query: 663 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 722
+ + +V ++GGSHGGFL+ HLIGQ P+ + A ARNP+ N+A M+G+TDIPDWC
Sbjct: 573 LQEEHFDADRVALMGGSHGGFLSCHLIGQYPETYRACVARNPVINIASMMGSTDIPDWCV 632
Query: 723 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 782
VE+ D P + KSPI + +VKTP + +LG +D RVP G++Y
Sbjct: 633 VEAGFPYSSDCL---PDLSVWAEMLDKSPIKYTPQVKTPLLLMLGQEDRRVPFKQGMEYY 689
Query: 783 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 820
RAL+ + V +++++P H + + + +SF+N LW
Sbjct: 690 RALKARNVPVRLLLYPKSTHALSEVEVESDSFMNAVLW 727
|
|
| MGI|MGI:88041 Apeh "acylpeptide hydrolase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 620 (223.3 bits), Expect = 8.0e-89, Sum P(2) = 8.0e-89
Identities = 136/398 (34%), Positives = 213/398 (53%)
Query: 423 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 482
+VD++P Q G+ F G+Y S + W +D ++ S+ G +
Sbjct: 344 VVDIVPR-QL--GESFSGIYCSLLPLGCWSADSQRVVFDSVQRSRQDLFAVDTQTGSVTS 400
Query: 483 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 542
+T S SW LLT+D D ++A S+P P +K G+ + + SW+++
Sbjct: 401 LTAGGSAGSWKLLTIDRDLMVAQFSTPNLPPSLKVGFLPPAGKEQSVSWVSLEEA----- 455
Query: 543 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 602
E + + + I + N+ + A FEAI + S+ D S P++V+ HGGP
Sbjct: 456 EPIPDI----HWGIRVLHPPPDQENV-QYADLDFEAILLQPSNSPDKSQVPMVVMPHGGP 510
Query: 603 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 662
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A+ V
Sbjct: 511 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVQQV 570
Query: 663 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 722
+ + +V ++GGSHGGFL+ HLIGQ P+ + A ARNP+ N+ M+GTTDIPDWC
Sbjct: 571 LQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSACIARNPVINIVSMMGTTDIPDWCM 630
Query: 723 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 782
VE+ G + + P + L KSPI +I +VKTP + +LG +D RVP GL+Y
Sbjct: 631 VET-GFPYSNDYL--PDLNVLEEMLDKSPIKYIPQVKTPVLLMLGQEDRRVPFKQGLEYY 687
Query: 783 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 820
AL+ + V +++++P H + + + +SF+N LW
Sbjct: 688 HALKARNVPVRLLLYPKSTHALSEVEVESDSFMNTVLW 725
|
|
| UNIPROTKB|P80227 APEH "Acylamino-acid-releasing enzyme" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 621 (223.7 bits), Expect = 1.3e-88, Sum P(2) = 1.3e-88
Identities = 147/444 (33%), Positives = 228/444 (51%)
Query: 377 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD 436
PR SPD +V+L S V H L DW T +VDV+P Q E
Sbjct: 303 PRLSPDQCRIVYLQFPSLVP---HQQCGQLCLYDWYTRVTVV----VVDVVPR-QLGEN- 353
Query: 437 CFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLRITPAESNFSWSLLT 496
F G+Y S + W +D ++ + G + +T S SW LLT
Sbjct: 354 -FSGIYCSLLPLGCWSADSQRVVFDTAQRSRQDLFAVDTQMGTVTPLTAGGSGGSWKLLT 412
Query: 497 LDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSI 556
+D D ++A S+P P +K G+ + W+++ E + + S +
Sbjct: 413 IDRDLMVAQFSTPNLPPCLKVGFLPPAGMEQEVVWVSLEEA-----EPIPDI--SWSIRV 465
Query: 557 MKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHXXXXXXXXXXXXX 616
++ P + A G FEAI + S+ D + P++V+ HGGPH
Sbjct: 466 LQPPPEQEHAQYV-GLD--FEAILIQPSNPPDKTQVPMVVMPHGGPHSSFVTSWMLLPAM 522
Query: 617 XXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVV 676
+G++ L+VNYRGS GFG++++ SLPG VGSQDV DV A++ V+ + +V ++
Sbjct: 523 LCKMGFAALLVNYRGSTGFGQDSILSLPGNVGSQDVKDVQFAVEQVLQEEHFDAGRVALL 582
Query: 677 GGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTE 736
GGSHGGFL+ HLIGQ P+ + A RNP+ N+A M+G+TDIPDWC VE+ D +
Sbjct: 583 GGSHGGFLSCHLIGQYPETYGACVVRNPVINIASMMGSTDIPDWCVVEAGYLYSSDCLPD 642
Query: 737 SPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 796
P+V + +KSPI + +VKTP + +LG +D RVP G++Y RAL+ + V ++++
Sbjct: 643 -PNV--WSEMLNKSPIKYTPQVKTPVLLMLGQEDRRVPFKQGMEYYRALKARNVPVRLLL 699
Query: 797 FPNDVHGIERPQSDFESFLNIGLW 820
+P H + + + +SF+N +W
Sbjct: 700 YPKSTHSLSEVEVESDSFMNAVIW 723
|
|
| RGD|2125 Apeh "N-acylaminoacyl-peptide hydrolase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 615 (221.5 bits), Expect = 3.5e-88, Sum P(2) = 3.5e-88
Identities = 135/398 (33%), Positives = 216/398 (54%)
Query: 423 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 482
+VD++P Q G+ F G+Y S + W +D ++ S G +
Sbjct: 344 VVDIVPR-QL--GESFSGIYCSLLPLGCWSADSQRVVFDSAQRSRQDLFAVDTQTGSITS 400
Query: 483 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 542
+T A S SW LLT+D D ++A S+P P +K G+ + + SW+++
Sbjct: 401 LTAAGSAGSWKLLTIDKDLMVAQFSTPSLPPSLKVGFLPPPGKEQSVSWVSLEEA----- 455
Query: 543 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 602
E + + + + + N+ + A FEAI + S+ D + P++V+ HGGP
Sbjct: 456 EPIPGI----HWGVRVLHPPPDQENV-QYADLDFEAILLQPSNPPDKTQVPMVVMPHGGP 510
Query: 603 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 662
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V
Sbjct: 511 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQV 570
Query: 663 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 722
+ + +V ++GGSHGGFL+ HLIGQ P+ + A ARNP+ N+A M+G+TDIPDWC
Sbjct: 571 LQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSACIARNPVINIASMMGSTDIPDWCM 630
Query: 723 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 782
VE+ G +S P + KSPI +I +VKTP + +LG +D RVP G++Y
Sbjct: 631 VET-GFPYSNSCL--PDLNVWEEMLDKSPIKYIPQVKTPVLLMLGQEDRRVPFKQGMEYY 687
Query: 783 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 820
RAL+ + V +++++P H + +++ +SF+N LW
Sbjct: 688 RALKARNVPVRLLLYPKSNHALSEVEAESDSFMNAVLW 725
|
|
| UNIPROTKB|P13676 Apeh "Acylamino-acid-releasing enzyme" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 615 (221.5 bits), Expect = 3.5e-88, Sum P(2) = 3.5e-88
Identities = 135/398 (33%), Positives = 216/398 (54%)
Query: 423 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 482
+VD++P Q G+ F G+Y S + W +D ++ S G +
Sbjct: 344 VVDIVPR-QL--GESFSGIYCSLLPLGCWSADSQRVVFDSAQRSRQDLFAVDTQTGSITS 400
Query: 483 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 542
+T A S SW LLT+D D ++A S+P P +K G+ + + SW+++
Sbjct: 401 LTAAGSAGSWKLLTIDKDLMVAQFSTPSLPPSLKVGFLPPPGKEQSVSWVSLEEA----- 455
Query: 543 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 602
E + + + + + N+ + A FEAI + S+ D + P++V+ HGGP
Sbjct: 456 EPIPGI----HWGVRVLHPPPDQENV-QYADLDFEAILLQPSNPPDKTQVPMVVMPHGGP 510
Query: 603 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 662
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V
Sbjct: 511 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQV 570
Query: 663 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 722
+ + +V ++GGSHGGFL+ HLIGQ P+ + A ARNP+ N+A M+G+TDIPDWC
Sbjct: 571 LQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSACIARNPVINIASMMGSTDIPDWCM 630
Query: 723 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 782
VE+ G +S P + KSPI +I +VKTP + +LG +D RVP G++Y
Sbjct: 631 VET-GFPYSNSCL--PDLNVWEEMLDKSPIKYIPQVKTPVLLMLGQEDRRVPFKQGMEYY 687
Query: 783 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 820
RAL+ + V +++++P H + +++ +SF+N LW
Sbjct: 688 RALKARNVPVRLLLYPKSNHALSEVEAESDSFMNAVLW 725
|
|
| UNIPROTKB|I3LEU6 I3LEU6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 600 (216.3 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
Identities = 146/452 (32%), Positives = 228/452 (50%)
Query: 377 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD 436
PR SPD +V+L S V H L DW T +S+ +VD++P Q G+
Sbjct: 290 PRLSPDQCRIVYLRFPSLVP---HQQCGQLCLYDWYTR--VTSV--VVDIVPR-QL--GE 339
Query: 437 CFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLRIT------PAE--S 488
F G+Y S + W +D ++ S G + +T P + S
Sbjct: 340 DFSGIYCSLLPLGCWSADSQRVVFDSPQRSRQDLFAVDTQMGSVTSLTAGLMVLPLKWGS 399
Query: 489 NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSL 548
SW LLT+D D ++ S+P P +K G+ + SW+++ E +
Sbjct: 400 GGSWKLLTIDRDLMVLQFSTPSVPPSLKVGFLPPAGKEQAVSWVSLEEA-----EPFPDI 454
Query: 549 LSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHXXXXX 608
S +++ P + A FEAI + S+ + + P++V+ HGGPH
Sbjct: 455 --SWSIRVLQPPPQQEHVQY---AGLDFEAILLQPSNSPEKTQVPMVVMPHGGPHSSFVT 509
Query: 609 XXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668
+G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V+
Sbjct: 510 AWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQVLQEEHF 569
Query: 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 728
+ +V ++GGSHGGFL+ HLIGQ P+ + A RNP+ N+A M+G+TDIPDWC VE+ S
Sbjct: 570 DAGRVALMGGSHGGFLSCHLIGQYPETYSACVVRNPVINIASMMGSTDIPDWCMVEAGFS 629
Query: 729 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 788
D P + KSPI + +VKTP + +LG +D RVP G++Y R L+ +
Sbjct: 630 YSSDCL---PDLSVWAAMLDKSPIKYAPQVKTPLLLMLGQEDRRVPFKQGMEYYRVLKAR 686
Query: 789 GVETKVIVFPNDVHGIERPQSDFESFLNIGLW 820
V +++++P H + + + +SF+N LW
Sbjct: 687 NVPVRLLLYPKSTHALSEVEVESDSFMNAVLW 718
|
|
| UNIPROTKB|P13798 APEH "Acylamino-acid-releasing enzyme" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 600 (216.3 bits), Expect = 4.4e-86, Sum P(2) = 4.4e-86
Identities = 133/402 (33%), Positives = 210/402 (52%)
Query: 423 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 482
+VDV+P Q E F G+Y S + W +D ++ S G +
Sbjct: 344 VVDVVPR-QLGEN--FSGIYCSLLPLGCWSADSQRVVFDSAQRSRQDLFAVDTQVGTVTS 400
Query: 483 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 542
+T S SW LLT+D D ++A S+P P +K G+ + + W+++
Sbjct: 401 LTAGGSGGSWKLLTIDQDLMVAQFSTPSLPPTLKVGFLPSAGKEQSVLWVSLEEA----- 455
Query: 543 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 602
E + + + I + N+ + A FEAI + D + P++V+ HGGP
Sbjct: 456 EPIPDI----HWGIRVLQPPPEQENV-QYAGLDFEAILLQPGSPPDKTQVPMVVMPHGGP 510
Query: 603 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 662
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V
Sbjct: 511 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQV 570
Query: 663 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 722
+ + S V ++GGSHGGF++ HLIGQ P+ + A ARNP+ N+A M+G+TDIPDWC
Sbjct: 571 LQEEHFDASHVALMGGSHGGFISCHLIGQYPETYRACVARNPVINIASMLGSTDIPDWCV 630
Query: 723 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 782
VE+ D P + KSPI +I +VKTP + +LG +D RVP G++Y
Sbjct: 631 VEAGFPFSSDCL---PDLSVWAEMLDKSPIRYIPQVKTPLLLMLGQEDRRVPFKQGMEYY 687
Query: 783 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824
RAL+ + V +++++P H + + + +SF+N LW + +
Sbjct: 688 RALKTRNVPVRLLLYPKSTHALSEVEVESDSFMNAVLWLRTH 729
|
|
| UNIPROTKB|F1SPS7 APEH "Acylamino-acid-releasing enzyme" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 594 (214.2 bits), Expect = 4.4e-86, Sum P(2) = 4.4e-86
Identities = 130/398 (32%), Positives = 207/398 (52%)
Query: 423 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 482
+VD++P Q G+ F G+Y S + W +D ++ S G +
Sbjct: 344 VVDIVPR-QL--GEDFSGIYCSLLPLGCWSADSQRVVFDSPQRSRQDLFAVDTQMGSVTS 400
Query: 483 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 542
+T S SW LLT+D D ++ S+P P +K G+ + SW+++
Sbjct: 401 LTAGGSGGSWKLLTIDRDLMVVQFSTPSVPPSLKVGFLPPAGKEQAVSWVSLEEA----- 455
Query: 543 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 602
E + S +++ P + A FEAI + S+ + + P++V+ HGGP
Sbjct: 456 EPFPDI--SWSIRVLQPPPQQEHVQY---AGLDFEAILLQPSNSPEKTQVPMVVMPHGGP 510
Query: 603 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 662
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V
Sbjct: 511 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQV 570
Query: 663 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 722
+ + +V ++GGSHGGFL+ HLIGQ P+ + A RNP+ N+A M+G+TDIPDWC
Sbjct: 571 LQEEHFDAGRVALMGGSHGGFLSCHLIGQYPETYSACVVRNPVINIASMMGSTDIPDWCM 630
Query: 723 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 782
VE+ S D P + KSPI + +VKTP + +LG +D RVP G++Y
Sbjct: 631 VEAGFSYSSDCL---PDLSVWAAMLDKSPIKYAPQVKTPLLLMLGQEDRRVPFKQGMEYY 687
Query: 783 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 820
R L+ + V +++++P H + + + +SF+N LW
Sbjct: 688 RVLKARNVPVRLLLYPKSTHALSEVEVESDSFMNAVLW 725
|
|
| UNIPROTKB|I3LFX8 I3LFX8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 5.7e-86, Sum P(2) = 5.7e-86
Identities = 130/398 (32%), Positives = 207/398 (52%)
Query: 423 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 482
+VD++P Q G+ F G+Y S + W +D ++ S G +
Sbjct: 314 VVDIVPR-QL--GEDFSGIYCSLLPLGCWSADSQRVVFDSPQRSRQDLFAVDTQMGSVTS 370
Query: 483 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 542
+T S SW LLT+D D ++ S+P P +K G+ + SW+++
Sbjct: 371 LTAGGSGGSWKLLTIDRDLMVLQFSTPSVPPSLKVGFLPPAGKEQAVSWVSLEEA----- 425
Query: 543 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 602
E + S +++ P + A FEAI + S+ + + P++V+ HGGP
Sbjct: 426 EPFPDI--SWSIRVLQPPPQQEHVQY---AGLDFEAILLQPSNSPEKTQVPMVVMPHGGP 480
Query: 603 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 662
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V
Sbjct: 481 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQV 540
Query: 663 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 722
+ + +V ++GGSHGGFL+ HLIGQ P+ + A RNP+ N+A M+G+TDIPDWC
Sbjct: 541 LQEEHFDAGRVALMGGSHGGFLSCHLIGQYPETYSACVVRNPVINIASMMGSTDIPDWCM 600
Query: 723 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 782
VE+ S D P + KSPI + +VKTP + +LG +D RVP G++Y
Sbjct: 601 VEAGFSYSSDCL---PDLSVWAAMLDKSPIKYAPQVKTPLLLMLGQEDRRVPFKQGMEYY 657
Query: 783 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 820
R L+ + V +++++P H + + + +SF+N LW
Sbjct: 658 RVLKARNVPVRLLLYPKSTHALSEVEVESDSFMNAVLW 695
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q8R146 | APEH_MOUSE | 3, ., 4, ., 1, 9, ., 1 | 0.3337 | 0.8026 | 0.9057 | yes | no |
| P13798 | ACPH_HUMAN | 3, ., 4, ., 1, 9, ., 1 | 0.3144 | 0.8026 | 0.9057 | yes | no |
| P13676 | ACPH_RAT | 3, ., 4, ., 1, 9, ., 1 | 0.3268 | 0.8026 | 0.9057 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00020112001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (771 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 826 | |||
| COG1506 | 620 | COG1506, DAP2, Dipeptidyl aminopeptidases/acylamin | 1e-44 | |
| pfam00326 | 212 | pfam00326, Peptidase_S9, Prolyl oligopeptidase fam | 8e-33 | |
| pfam12697 | 187 | pfam12697, Abhydrolase_6, Alpha/beta hydrolase fam | 6e-11 | |
| COG1505 | 648 | COG1505, COG1505, Serine proteases of the peptidas | 7e-09 | |
| pfam12695 | 145 | pfam12695, Abhydrolase_5, Alpha/beta hydrolase fam | 7e-09 | |
| COG0657 | 312 | COG0657, Aes, Esterase/lipase [Lipid metabolism] | 1e-08 | |
| COG0412 | 236 | COG0412, COG0412, Dienelactone hydrolase and relat | 7e-08 | |
| pfam07859 | 207 | pfam07859, Abhydrolase_3, alpha/beta hydrolase fol | 2e-04 | |
| COG0596 | 282 | COG0596, MhpC, Predicted hydrolases or acyltransfe | 2e-04 | |
| COG1770 | 682 | COG1770, PtrB, Protease II [Amino acid transport a | 3e-04 | |
| PRK10115 | 686 | PRK10115, PRK10115, protease 2; Provisional | 4e-04 | |
| pfam01738 | 215 | pfam01738, DLH, Dienelactone hydrolase family | 0.001 |
| >gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 1e-44
Identities = 114/467 (24%), Positives = 186/467 (39%), Gaps = 52/467 (11%)
Query: 360 EDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 419
+ + +LT S F DGK + L +S L +G+ SS
Sbjct: 204 GNGELESLTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSS 263
Query: 420 LEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 479
+ V +GD GL + GSS + V
Sbjct: 264 GDDTRGAWAVEGGLDGD---GLLFIAT---------------DGGGSSPLF---RVDDLG 302
Query: 480 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPIS 539
+ + +DG + SSP P Y Y + K ++S +
Sbjct: 303 GGVEGLSGDDGGVPGFDVDGRKLALAYSSP-TEPPEIYLYDRGEEAK-------LTSSNN 354
Query: 540 RCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLH 599
+KVK L + + + L K KK PLIV +H
Sbjct: 355 SGLKKVK-LAEPEPVTYKSNDGETIHGWLYKPPGFDPR--------KKY----PLIVYIH 401
Query: 600 GGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI 659
GGP + S++ + L+S GY++L NYRGS G+G E ++ G G D+ D++ A+
Sbjct: 402 GGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAV 461
Query: 660 DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD 719
D ++ + L +P ++ + GGS+GG++T + P F AA A + L G +
Sbjct: 462 DALVKLPLVDPERIGITGGSYGGYMTLLAATKTPR-FKAAVAVAGGVDWLLYFGESTEGL 520
Query: 720 WCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGL 779
E G + D ++ +SPI + +KTP + + G +D RVP+
Sbjct: 521 RFDPEENGGGPPE---------DREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAE 571
Query: 780 QYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826
Q AL+ KG +++VFP++ HG RP++ + I WFK++ K
Sbjct: 572 QLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILDWFKRHLK 618
|
Length = 620 |
| >gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 8e-33
Identities = 60/218 (27%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 609 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668
S+S +L L+ GY + + N RGS G+G + G +G + +D + A +++I G
Sbjct: 2 SFSWNLQLLADRGYVVAVANGRGSGGYGRAWHDAGKGDLGQNEFDDFIAAAEYLIAQGYV 61
Query: 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 728
+P ++ + GGS+GG+LT + Q PD F AA A P+ + + + E Y
Sbjct: 62 DPDRLAIWGGSYGGYLTGAALNQRPDLFKAAVAVVPVVD---WLTYMSDTSP-FTERYME 117
Query: 729 KGKDSFTESPSVEDLTRFHSKSPISHISKVK--TPTIFLLGAQDLRVPVSNGLQYARALR 786
G ++ + SP S VK P + + G D RVP + L+ AL+
Sbjct: 118 WG-------NPWDNEEGYRYLSPYSPYDNVKAYPPLLLIHGLHDDRVPPAEALKLVAALQ 170
Query: 787 EKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824
KG +++FP++ HG +P++ E + + K
Sbjct: 171 AKGKNVLLLIFPDEGHGGGKPRNKREEYARELAFLLKV 208
|
Length = 212 |
| >gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 6e-11
Identities = 39/216 (18%), Positives = 72/216 (33%), Gaps = 36/216 (16%)
Query: 595 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 654
+V+LHG S S+ L++ GY +L + G G+ D D
Sbjct: 1 VVLLHGAGGSAE--SWRPLAEALAA-GYRVLAPDLPG---HGDSDGPPRTPYSLEDDAAD 54
Query: 655 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 714
+ +D + V +VG S GG + + P++ L L+
Sbjct: 55 LAALLDAL------GLGPVVLVGHSLGGAVALAAAARRPERVAG---------LVLISPP 99
Query: 715 TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVP 774
+ + + + + DL ++++ P + + G D VP
Sbjct: 100 LRDLEE-LLAADAAALLALLRAALLDADLRE--------ALARLTVPVLVIHGEDDPLVP 150
Query: 775 VSNGLQYARALREKGVETKVIVFPNDVHGI--ERPQ 808
+ A AL +++V P H E P+
Sbjct: 151 PEAARRLAEALPGA----ELVVLPGAGHLPHLEHPE 182
|
This family contains alpha/beta hydrolase enzymes of diverse specificity. Length = 187 |
| >gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 7e-09
Identities = 51/211 (24%), Positives = 89/211 (42%), Gaps = 16/211 (7%)
Query: 587 KDCSCDPLIVVLHG-GPHSVSLS-SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 644
K D +L+ G ++SL+ +S S G ++ N RG FG E Q+
Sbjct: 414 KGAKKDENPTLLYAYGGFNISLTPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGM 473
Query: 645 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 704
+ +D + + +I G+ +P K+ + GGS+GG L + Q P+ F AA P
Sbjct: 474 KENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVP 533
Query: 705 LCNLALMVGTTDIP-DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKT--P 761
L + M+ + ++ YG+ + P ED + SP ++ + P
Sbjct: 534 LLD---MLRYHLLTAGSSWIAEYGN------PDDP--EDRAFLLAYSPYHNLKPGQKYPP 582
Query: 762 TIFLLGAQDLRVPVSNGLQYARALREKGVET 792
T+ D RV ++ ++A L+E G
Sbjct: 583 TLITTSLHDDRVHPAHARKFAAKLQEVGAPV 613
|
Length = 648 |
| >gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 7e-09
Identities = 36/210 (17%), Positives = 63/210 (30%), Gaps = 65/210 (30%)
Query: 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653
L+V+LHG +Y+ L+S GY+++ V+Y G S
Sbjct: 1 LVVLLHGA--GGDPEAYAPLARALASRGYNVVAVDYPGHGA--------------SLGAP 44
Query: 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 713
D + V+ +P ++ +VG S GG + L + P A
Sbjct: 45 DA----EAVLADAPLDPERIVLVGHSLGGGVALLLAARDPRVKAAVVLAAG--------- 91
Query: 714 TTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRV 773
+ ++K+ P + + G +D V
Sbjct: 92 ---------------------------------DPPDALDDLAKLTVPVLIIHGTRDGVV 118
Query: 774 PVSNGLQYARALREKGVETKVIVFPNDVHG 803
P A AL +++V H
Sbjct: 119 PPEEAEALAAALPGP---AELVVIEGAGHS 145
|
This family contains a diverse range of alpha/beta hydrolase enzymes. Length = 145 |
| >gnl|CDD|223730 COG0657, Aes, Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 1e-08
Identities = 51/229 (22%), Positives = 87/229 (37%), Gaps = 27/229 (11%)
Query: 590 SCDPLIVVLHGGPH-SVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKV 647
+ P+++ LHGG SL ++ +A L++ G ++ V+YR + P
Sbjct: 77 ATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLA-----------PEHP 125
Query: 648 GSQDVNDVLTAIDHVIDMGL---ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 704
+ D A + +PS++ V G S GG L L A D+ + A
Sbjct: 126 FPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQV 185
Query: 705 LC--NLALMVGTTDIPDWCYVESYGS-KGKDSFTES--PSVEDLTRFHSKSPIS--HISK 757
L L L +P + + + F + + D SP++ +S
Sbjct: 186 LISPLLDLTSSAASLPGYGEADLLDAAAILAWFADLYLGAAPDREDPE-ASPLASDDLSG 244
Query: 758 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 806
+ PT+ D G YA LR GV ++ V+P +HG +
Sbjct: 245 LP-PTLIQTAEFDPLRD--EGEAYAERLRAAGVPVELRVYPGMIHGFDL 290
|
Length = 312 |
| >gnl|CDD|223489 COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 7e-08
Identities = 48/220 (21%), Positives = 81/220 (36%), Gaps = 54/220 (24%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGF-------GEEALQSLP 644
P ++VLH L+ + + +A L+ GY +L + G G E L
Sbjct: 28 PGVIVLHEIFG---LNPHIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLV 84
Query: 645 GKVGSQDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 703
+V +V D+ A+D++ +P ++ VVG GG L + AA R
Sbjct: 85 ERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLA-----------LLAATRA 133
Query: 704 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTI 763
P A+ + YG D + K+K P +
Sbjct: 134 PEVKAAV----------AF---YGGLIAD------------------DTADAPKIKVPVL 162
Query: 764 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803
L +D +P ++ A AL + GV+ + ++P HG
Sbjct: 163 LHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHG 202
|
Length = 236 |
| >gnl|CDD|219611 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 40/174 (22%), Positives = 60/174 (34%), Gaps = 40/174 (22%)
Query: 652 VNDVLTAI----DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN---- 703
+ D A+ +H ++G A+PS++ V G S GG L VA AR+
Sbjct: 49 IEDAYAALRWLAEHAWELG-ADPSRIAVAGDSAGGNLAAA---------VALRARDEGLP 98
Query: 704 -PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPT 762
P + + G + ESY ++ R P
Sbjct: 99 LPAGQVLIYPGLDLRTE---SESYNEYADGPLLTRDDMDWFWR-LYLPGAD----RDDPL 150
Query: 763 IFLLGAQDLR-VP------------VSNGLQYARALREKGVETKVIVFPNDVHG 803
L A DL +P G YA LR GVE +++ +P +HG
Sbjct: 151 ASPLFAADLSGLPPALVVVAEFDPLRDEGEAYAERLRAAGVEVELVEYPGMIHG 204
|
This catalytic domain is found in a very wide range of enzymes. Length = 207 |
| >gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.8 bits (102), Expect = 2e-04
Identities = 29/129 (22%), Positives = 46/129 (35%), Gaps = 12/129 (9%)
Query: 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
P +V+LHG P S S+ + + Y ++ + RG G G S
Sbjct: 21 GPPLVLLHGFPGSSSVWRPVFKVLPALAARYRVIAPDLRG---HG---RSDPAGYSLSAY 74
Query: 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711
+D+ +D + KV +VG S GG + L + PD+ P L+
Sbjct: 75 ADDLAALLDAL------GLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPPPGLL 128
Query: 712 VGTTDIPDW 720
P
Sbjct: 129 EAALRQPAG 137
|
Length = 282 |
| >gnl|CDD|224684 COG1770, PtrB, Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 35/168 (20%), Positives = 59/168 (35%), Gaps = 40/168 (23%)
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN-LALM 711
D + A H++ G +P ++ +GGS GG L + APD F A+ P + L M
Sbjct: 509 TDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTM 568
Query: 712 ------VGTTDIPDW---------CYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS 756
+ T+ +W Y++SY SP ++
Sbjct: 569 LDPSLPLTVTEWDEWGNPLDPEYYDYIKSY-----------------------SPYDNVE 605
Query: 757 KVKTPTIF-LLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803
P I G D RV ++ LRE + ++ ++
Sbjct: 606 AQPYPAILVTTGLNDPRVQYWEPAKWVAKLRELKTDGNPLLLKTNMDA 653
|
Length = 682 |
| >gnl|CDD|182247 PRK10115, PRK10115, protease 2; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 4/129 (3%)
Query: 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
+PL+V +G + + +S S L G+ IV+ RG G++ + GK +
Sbjct: 445 NPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYED--GKFLKKK 502
Query: 652 --VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709
ND L A D ++ +G +PS +GGS GG L I Q P+ F A+ P ++
Sbjct: 503 NTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVV 562
Query: 710 LMVGTTDIP 718
+ IP
Sbjct: 563 TTMLDESIP 571
|
Length = 686 |
| >gnl|CDD|216672 pfam01738, DLH, Dienelactone hydrolase family | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 48/227 (21%), Positives = 72/227 (31%), Gaps = 56/227 (24%)
Query: 593 PLIVVLH--GGPHSVSLSSYSKSLAFLSSVGYSLLIVN--YRGSLGFG-----EEALQSL 643
P++VV G ++ A L+ GY L + R L A++ L
Sbjct: 15 PVVVVFQEIFGVNNF----IRDIAARLAEEGYVALCPDLYARQGLDPTDPREAARAMRGL 70
Query: 644 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 703
K V+D+L AI+++ + KV VVG GG L AARN
Sbjct: 71 LSKRMEAVVDDLLAAINYLRGQPYVDTKKVGVVGFCLGGRLA-----------FLLAARN 119
Query: 704 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTI 763
+ GT P P+ +K P +
Sbjct: 120 GVDAAVSFYGTGPEP--------------------------------PLDEAPAIKAPIL 147
Query: 764 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD 810
G +D VP ALR V+ ++ V+P H +
Sbjct: 148 AHFGEEDPFVPAEARDLLEEALRAANVDHELHVYPGAGHAFAADGRE 194
|
Length = 215 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 826 | |||
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 100.0 | |
| PRK10115 | 686 | protease 2; Provisional | 100.0 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 100.0 | |
| KOG2281 | 867 | consensus Dipeptidyl aminopeptidases/acylaminoacyl | 100.0 | |
| PF00326 | 213 | Peptidase_S9: Prolyl oligopeptidase family This fa | 99.97 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.96 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 99.96 | |
| COG1505 | 648 | Serine proteases of the peptidase family S9A [Amin | 99.95 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.95 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.94 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.93 | |
| KOG2237 | 712 | consensus Predicted serine protease [Posttranslati | 99.93 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.93 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.93 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.93 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.92 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.9 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.89 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.88 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.88 | |
| PRK10566 | 249 | esterase; Provisional | 99.87 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.87 | |
| PRK13604 | 307 | luxD acyl transferase; Provisional | 99.87 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.87 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.86 | |
| PLN02298 | 330 | hydrolase, alpha/beta fold family protein | 99.85 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.85 | |
| KOG1455 | 313 | consensus Lysophospholipase [Lipid transport and m | 99.85 | |
| PHA02857 | 276 | monoglyceride lipase; Provisional | 99.85 | |
| PLN02385 | 349 | hydrolase; alpha/beta fold family protein | 99.85 | |
| PLN02442 | 283 | S-formylglutathione hydrolase | 99.84 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.83 | |
| PRK05077 | 414 | frsA fermentation/respiration switch protein; Revi | 99.82 | |
| PRK10749 | 330 | lysophospholipase L2; Provisional | 99.82 | |
| PF01738 | 218 | DLH: Dienelactone hydrolase family; InterPro: IPR0 | 99.82 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.81 | |
| TIGR02821 | 275 | fghA_ester_D S-formylglutathione hydrolase. This m | 99.8 | |
| COG1647 | 243 | Esterase/lipase [General function prediction only] | 99.8 | |
| PLN02652 | 395 | hydrolase; alpha/beta fold family protein | 99.8 | |
| PRK10162 | 318 | acetyl esterase; Provisional | 99.79 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.78 | |
| COG0412 | 236 | Dienelactone hydrolase and related enzymes [Second | 99.77 | |
| PF05448 | 320 | AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR0 | 99.76 | |
| COG2267 | 298 | PldB Lysophospholipase [Lipid metabolism] | 99.75 | |
| PRK11460 | 232 | putative hydrolase; Provisional | 99.74 | |
| KOG1552 | 258 | consensus Predicted alpha/beta hydrolase [General | 99.74 | |
| PRK05371 | 767 | x-prolyl-dipeptidyl aminopeptidase; Provisional | 99.73 | |
| TIGR01840 | 212 | esterase_phb esterase, PHB depolymerase family. Th | 99.72 | |
| PRK00870 | 302 | haloalkane dehalogenase; Provisional | 99.72 | |
| PRK10985 | 324 | putative hydrolase; Provisional | 99.71 | |
| KOG4391 | 300 | consensus Predicted alpha/beta hydrolase BEM46 [Ge | 99.7 | |
| TIGR03343 | 282 | biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-die | 99.7 | |
| PLN02511 | 388 | hydrolase | 99.7 | |
| COG3458 | 321 | Acetyl esterase (deacetylase) [Secondary metabolit | 99.69 | |
| COG0657 | 312 | Aes Esterase/lipase [Lipid metabolism] | 99.69 | |
| PLN02824 | 294 | hydrolase, alpha/beta fold family protein | 99.69 | |
| TIGR01607 | 332 | PST-A Plasmodium subtelomeric family (PST-A). Thes | 99.68 | |
| TIGR03611 | 257 | RutD pyrimidine utilization protein D. This protei | 99.68 | |
| KOG4178 | 322 | consensus Soluble epoxide hydrolase [Lipid transpo | 99.68 | |
| TIGR02240 | 276 | PHA_depoly_arom poly(3-hydroxyalkanoate) depolymer | 99.67 | |
| PLN02965 | 255 | Probable pheophorbidase | 99.67 | |
| KOG1515 | 336 | consensus Arylacetamide deacetylase [Defense mecha | 99.66 | |
| TIGR02427 | 251 | protocat_pcaD 3-oxoadipate enol-lactonase. Members | 99.66 | |
| PRK10673 | 255 | acyl-CoA esterase; Provisional | 99.66 | |
| PF12695 | 145 | Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3 | 99.66 | |
| PRK03592 | 295 | haloalkane dehalogenase; Provisional | 99.66 | |
| TIGR00976 | 550 | /NonD putative hydrolase, CocE/NonD family. This m | 99.66 | |
| TIGR03056 | 278 | bchO_mg_che_rel putative magnesium chelatase acces | 99.64 | |
| PF07859 | 211 | Abhydrolase_3: alpha/beta hydrolase fold A web pag | 99.64 | |
| PLN02679 | 360 | hydrolase, alpha/beta fold family protein | 99.64 | |
| PLN03087 | 481 | BODYGUARD 1 domain containing hydrolase; Provision | 99.64 | |
| PF02129 | 272 | Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 fam | 99.63 | |
| TIGR01250 | 288 | pro_imino_pep_2 proline-specific peptidases, Bacil | 99.61 | |
| TIGR03100 | 274 | hydr1_PEP hydrolase, ortholog 1, exosortase system | 99.61 | |
| PF02230 | 216 | Abhydrolase_2: Phospholipase/Carboxylesterase; Int | 99.6 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.6 | |
| PRK11071 | 190 | esterase YqiA; Provisional | 99.6 | |
| TIGR03695 | 251 | menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene | 99.6 | |
| COG0429 | 345 | Predicted hydrolase of the alpha/beta-hydrolase fo | 99.6 | |
| TIGR01738 | 245 | bioH putative pimeloyl-BioC--CoA transferase BioH. | 99.6 | |
| PLN02894 | 402 | hydrolase, alpha/beta fold family protein | 99.59 | |
| PRK03204 | 286 | haloalkane dehalogenase; Provisional | 99.58 | |
| PRK10349 | 256 | carboxylesterase BioH; Provisional | 99.58 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.58 | |
| PF06500 | 411 | DUF1100: Alpha/beta hydrolase of unknown function | 99.57 | |
| PLN02872 | 395 | triacylglycerol lipase | 99.57 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.57 | |
| TIGR01836 | 350 | PHA_synth_III_C poly(R)-hydroxyalkanoic acid synth | 99.56 | |
| PF12697 | 228 | Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3 | 99.56 | |
| PRK07581 | 339 | hypothetical protein; Validated | 99.56 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 99.55 | |
| COG4099 | 387 | Predicted peptidase [General function prediction o | 99.55 | |
| TIGR01249 | 306 | pro_imino_pep_1 proline iminopeptidase, Neisseria- | 99.55 | |
| COG2945 | 210 | Predicted hydrolase of the alpha/beta superfamily | 99.55 | |
| PLN02578 | 354 | hydrolase | 99.55 | |
| PRK06489 | 360 | hypothetical protein; Provisional | 99.55 | |
| PLN00021 | 313 | chlorophyllase | 99.55 | |
| TIGR01392 | 351 | homoserO_Ac_trn homoserine O-acetyltransferase. Th | 99.54 | |
| PRK00175 | 379 | metX homoserine O-acetyltransferase; Provisional | 99.53 | |
| KOG4409 | 365 | consensus Predicted hydrolase/acyltransferase (alp | 99.53 | |
| PF10503 | 220 | Esterase_phd: Esterase PHB depolymerase | 99.52 | |
| KOG4667 | 269 | consensus Predicted esterase [Lipid transport and | 99.52 | |
| PRK11126 | 242 | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxyl | 99.52 | |
| TIGR03101 | 266 | hydr2_PEP hydrolase, ortholog 2, exosortase system | 99.51 | |
| PLN03084 | 383 | alpha/beta hydrolase fold protein; Provisional | 99.51 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.5 | |
| PLN02211 | 273 | methyl indole-3-acetate methyltransferase | 99.49 | |
| COG0400 | 207 | Predicted esterase [General function prediction on | 99.48 | |
| PF08840 | 213 | BAAT_C: BAAT / Acyl-CoA thioester hydrolase C term | 99.48 | |
| KOG1838 | 409 | consensus Alpha/beta hydrolase [General function p | 99.44 | |
| PRK08775 | 343 | homoserine O-acetyltransferase; Provisional | 99.43 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.43 | |
| PF12715 | 390 | Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8 | 99.41 | |
| KOG3043 | 242 | consensus Predicted hydrolase related to dienelact | 99.4 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.4 | |
| KOG1454 | 326 | consensus Predicted hydrolase/acyltransferase (alp | 99.4 | |
| COG3509 | 312 | LpqC Poly(3-hydroxybutyrate) depolymerase [Seconda | 99.39 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 99.35 | |
| PRK06765 | 389 | homoserine O-acetyltransferase; Provisional | 99.34 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.34 | |
| TIGR01838 | 532 | PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, | 99.33 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.31 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.29 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.28 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.28 | |
| PRK10439 | 411 | enterobactin/ferric enterobactin esterase; Provisi | 99.28 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.27 | |
| PF12740 | 259 | Chlorophyllase2: Chlorophyllase enzyme; InterPro: | 99.23 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.23 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.22 | |
| KOG2984 | 277 | consensus Predicted hydrolase [General function pr | 99.21 | |
| KOG4627 | 270 | consensus Kynurenine formamidase [Amino acid trans | 99.18 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.18 | |
| COG2936 | 563 | Predicted acyl esterases [General function predict | 99.18 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.18 | |
| PF03583 | 290 | LIP: Secretory lipase ; InterPro: IPR005152 This e | 99.18 | |
| PF05728 | 187 | UPF0227: Uncharacterised protein family (UPF0227); | 99.18 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.17 | |
| PF00756 | 251 | Esterase: Putative esterase; InterPro: IPR000801 T | 99.17 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.16 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.15 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 99.15 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 99.14 | |
| KOG3101 | 283 | consensus Esterase D [General function prediction | 99.14 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.13 | |
| PF08538 | 303 | DUF1749: Protein of unknown function (DUF1749); In | 99.13 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.12 | |
| PF00561 | 230 | Abhydrolase_1: alpha/beta hydrolase fold A web pag | 99.11 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.1 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.1 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.1 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.1 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.06 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.05 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.05 | |
| COG4757 | 281 | Predicted alpha/beta hydrolase [General function p | 99.05 | |
| cd00312 | 493 | Esterase_lipase Esterases and lipases (includes fu | 99.04 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.04 | |
| PF03403 | 379 | PAF-AH_p_II: Platelet-activating factor acetylhydr | 99.04 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.03 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.03 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 99.01 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.0 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.0 | |
| KOG2564 | 343 | consensus Predicted acetyltransferases and hydrola | 98.99 | |
| PF06342 | 297 | DUF1057: Alpha/beta hydrolase of unknown function | 98.94 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.94 | |
| TIGR01839 | 560 | PHA_synth_II poly(R)-hydroxyalkanoic acid synthase | 98.93 | |
| COG3571 | 213 | Predicted hydrolase of the alpha/beta-hydrolase fo | 98.92 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.92 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 98.9 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.9 | |
| PTZ00421 | 493 | coronin; Provisional | 98.9 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.89 | |
| KOG2382 | 315 | consensus Predicted alpha/beta hydrolase [General | 98.89 | |
| PTZ00421 | 493 | coronin; Provisional | 98.88 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 98.88 | |
| COG2272 | 491 | PnbA Carboxylesterase type B [Lipid metabolism] | 98.87 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 98.87 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.85 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.85 | |
| KOG2624 | 403 | consensus Triglyceride lipase-cholesterol esterase | 98.84 | |
| PF10340 | 374 | DUF2424: Protein of unknown function (DUF2424); In | 98.84 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 98.84 | |
| COG4188 | 365 | Predicted dienelactone hydrolase [General function | 98.83 | |
| PF09752 | 348 | DUF2048: Uncharacterized conserved protein (DUF204 | 98.83 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 98.82 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 98.81 | |
| PF00135 | 535 | COesterase: Carboxylesterase family The prints ent | 98.81 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.81 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.8 | |
| PF06821 | 171 | Ser_hydrolase: Serine hydrolase; InterPro: IPR0106 | 98.79 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.79 | |
| COG2382 | 299 | Fes Enterochelin esterase and related enzymes [Ino | 98.79 | |
| PF07224 | 307 | Chlorophyllase: Chlorophyllase; InterPro: IPR01082 | 98.79 | |
| COG0596 | 282 | MhpC Predicted hydrolases or acyltransferases (alp | 98.78 | |
| COG0627 | 316 | Predicted esterase [General function prediction on | 98.78 | |
| PTZ00420 | 568 | coronin; Provisional | 98.77 | |
| KOG2112 | 206 | consensus Lysophospholipase [Lipid transport and m | 98.77 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.76 | |
| PTZ00420 | 568 | coronin; Provisional | 98.75 | |
| COG3208 | 244 | GrsT Predicted thioesterase involved in non-riboso | 98.74 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.73 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 98.73 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.73 | |
| KOG3847 | 399 | consensus Phospholipase A2 (platelet-activating fa | 98.73 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 98.72 | |
| cd00707 | 275 | Pancreat_lipase_like Pancreatic lipase-like enzyme | 98.7 | |
| PF02273 | 294 | Acyl_transf_2: Acyl transferase; InterPro: IPR0031 | 98.69 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 98.68 | |
| COG2021 | 368 | MET2 Homoserine acetyltransferase [Amino acid tran | 98.66 | |
| TIGR03230 | 442 | lipo_lipase lipoprotein lipase. Members of this pr | 98.66 | |
| TIGR01849 | 406 | PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, | 98.66 | |
| COG2819 | 264 | Predicted hydrolase of the alpha/beta superfamily | 98.65 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 98.61 | |
| PRK10115 | 686 | protease 2; Provisional | 98.59 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 98.59 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.59 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 98.57 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.57 | |
| TIGR03502 | 792 | lipase_Pla1_cef extracellular lipase, Pla-1/cef fa | 98.57 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.57 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 98.57 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 98.56 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.56 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 98.56 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 98.55 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.5 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.5 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.48 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 98.47 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 98.46 | |
| PF03959 | 212 | FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 | 98.46 | |
| COG1073 | 299 | Hydrolases of the alpha/beta superfamily [General | 98.45 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.44 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 98.44 | |
| PRK04940 | 180 | hypothetical protein; Provisional | 98.44 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.42 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 98.41 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 98.41 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 98.37 | |
| PF11144 | 403 | DUF2920: Protein of unknown function (DUF2920); In | 98.33 | |
| PF10230 | 266 | DUF2305: Uncharacterised conserved protein (DUF230 | 98.32 | |
| KOG1553 | 517 | consensus Predicted alpha/beta hydrolase BAT5 [Gen | 98.32 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.3 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 98.29 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 98.29 | |
| COG3243 | 445 | PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid me | 98.28 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.25 | |
| KOG2551 | 230 | consensus Phospholipase/carboxyhydrolase [Amino ac | 98.23 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.22 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.22 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.2 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 98.2 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.19 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.19 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 98.18 | |
| KOG1516 | 545 | consensus Carboxylesterase and related proteins [G | 98.18 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.16 | |
| PF12146 | 79 | Hydrolase_4: Putative lysophospholipase; InterPro: | 98.13 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.08 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.07 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 98.07 | |
| PF11339 | 581 | DUF3141: Protein of unknown function (DUF3141); In | 98.07 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.06 | |
| PF06028 | 255 | DUF915: Alpha/beta hydrolase of unknown function ( | 98.06 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.04 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 98.03 | |
| COG3545 | 181 | Predicted esterase of the alpha/beta hydrolase fol | 98.01 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.0 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 97.99 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.99 | |
| KOG3253 | 784 | consensus Predicted alpha/beta hydrolase [General | 97.96 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.95 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.93 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 97.88 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.88 | |
| PF06057 | 192 | VirJ: Bacterial virulence protein (VirJ); InterPro | 97.86 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 97.85 | |
| COG3150 | 191 | Predicted esterase [General function prediction on | 97.84 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 97.84 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 97.83 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 97.83 | |
| PF10142 | 367 | PhoPQ_related: PhoPQ-activated pathogenicity-relat | 97.81 | |
| KOG2931 | 326 | consensus Differentiation-related gene 1 protein ( | 97.8 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 97.8 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 97.79 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 97.79 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.76 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 97.76 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.76 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.74 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 97.73 | |
| PF12048 | 310 | DUF3530: Protein of unknown function (DUF3530); In | 97.72 | |
| PF07819 | 225 | PGAP1: PGAP1-like protein; InterPro: IPR012908 The | 97.71 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 97.7 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.69 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 97.68 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 97.68 | |
| PF03096 | 283 | Ndr: Ndr family; InterPro: IPR004142 This family c | 97.67 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 97.67 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 97.66 | |
| PF00975 | 229 | Thioesterase: Thioesterase domain; InterPro: IPR00 | 97.65 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 97.65 | |
| PF05577 | 434 | Peptidase_S28: Serine carboxypeptidase S28; InterP | 97.63 | |
| KOG4840 | 299 | consensus Predicted hydrolases or acyltransferases | 97.62 | |
| PF05705 | 240 | DUF829: Eukaryotic protein of unknown function (DU | 97.61 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 97.59 | |
| COG4814 | 288 | Uncharacterized protein with an alpha/beta hydrola | 97.59 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 97.59 | |
| PTZ00472 | 462 | serine carboxypeptidase (CBP1); Provisional | 97.58 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 97.56 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 97.56 | |
| PF05677 | 365 | DUF818: Chlamydia CHLPS protein (DUF818); InterPro | 97.56 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 97.53 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 97.53 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 97.53 | |
| PF00151 | 331 | Lipase: Lipase; InterPro: IPR013818 Triglyceride l | 97.53 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 97.52 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.49 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 97.49 | |
| PF01674 | 219 | Lipase_2: Lipase (class 2); InterPro: IPR002918 Li | 97.49 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 97.47 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 97.45 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 97.44 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 97.42 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.4 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 97.39 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 97.39 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 97.37 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 97.37 | |
| COG4947 | 227 | Uncharacterized protein conserved in bacteria [Fun | 97.35 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.34 | |
| PLN02733 | 440 | phosphatidylcholine-sterol O-acyltransferase | 97.33 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 97.33 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 97.33 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 97.31 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 97.3 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 97.28 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.26 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.26 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 97.26 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 97.25 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 97.24 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 97.24 | |
| KOG3975 | 301 | consensus Uncharacterized conserved protein [Funct | 97.19 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 97.16 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.16 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.15 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.15 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 97.14 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 97.14 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.13 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 97.12 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 97.12 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 97.12 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 97.07 | |
| KOG4389 | 601 | consensus Acetylcholinesterase/Butyrylcholinestera | 97.05 | |
| PF05990 | 233 | DUF900: Alpha/beta hydrolase of unknown function ( | 97.03 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 96.99 | |
| KOG2565 | 469 | consensus Predicted hydrolases or acyltransferases | 96.99 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 96.99 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 96.98 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 96.97 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 96.96 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 96.96 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.94 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.91 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.91 | |
| PF00450 | 415 | Peptidase_S10: Serine carboxypeptidase; InterPro: | 96.86 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 96.85 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 96.84 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 96.84 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 96.83 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 96.82 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 96.74 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 96.72 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 96.71 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 96.71 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 96.7 | |
| KOG3967 | 297 | consensus Uncharacterized conserved protein [Funct | 96.69 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 96.67 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.67 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 96.65 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 96.64 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 96.63 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.6 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 96.55 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 96.54 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 96.52 | |
| PF07082 | 250 | DUF1350: Protein of unknown function (DUF1350); In | 96.45 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 96.43 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 96.42 | |
| KOG2182 | 514 | consensus Hydrolytic enzymes of the alpha/beta hyd | 96.37 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 96.32 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 96.24 | |
| KOG2183 | 492 | consensus Prolylcarboxypeptidase (angiotensinase C | 96.24 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.22 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 96.22 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 96.21 | |
| COG4782 | 377 | Uncharacterized protein conserved in bacteria [Fun | 96.21 | |
| PF08386 | 103 | Abhydrolase_4: TAP-like protein; InterPro: IPR0135 | 96.18 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 96.11 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.09 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.07 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 96.06 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 96.06 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.04 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 95.99 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 95.93 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.88 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 95.88 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 95.85 | |
| PLN03016 | 433 | sinapoylglucose-malate O-sinapoyltransferase | 95.78 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 95.76 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.76 | |
| COG3319 | 257 | Thioesterase domains of type I polyketide synthase | 95.72 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.71 | |
| PLN02209 | 437 | serine carboxypeptidase | 95.66 | |
| TIGR03712 | 511 | acc_sec_asp2 accessory Sec system protein Asp2. Th | 95.64 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 95.61 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.59 | |
| KOG1282 | 454 | consensus Serine carboxypeptidases (lysosomal cath | 95.57 | |
| COG1075 | 336 | LipA Predicted acetyltransferases and hydrolases w | 95.57 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 95.56 | |
| KOG4388 | 880 | consensus Hormone-sensitive lipase HSL [Lipid tran | 95.55 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.53 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 95.48 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 95.44 | |
| KOG3724 | 973 | consensus Negative regulator of COPII vesicle form | 95.11 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 95.1 | |
| PF05057 | 217 | DUF676: Putative serine esterase (DUF676); InterPr | 94.98 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 94.94 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 94.89 | |
| PF11187 | 224 | DUF2974: Protein of unknown function (DUF2974); In | 94.89 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 94.8 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 94.76 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 94.41 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 94.41 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 94.38 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 94.35 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 94.14 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 94.13 | |
| PF02450 | 389 | LCAT: Lecithin:cholesterol acyltransferase; InterP | 94.11 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 94.05 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 94.05 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 93.92 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 93.77 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 93.65 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 93.59 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 93.51 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 93.47 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.45 | |
| KOG1551 | 371 | consensus Uncharacterized conserved protein [Funct | 93.19 | |
| COG2939 | 498 | Carboxypeptidase C (cathepsin A) [Amino acid trans | 93.17 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 93.12 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 93.0 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 92.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 92.84 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 92.71 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 92.7 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 92.67 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 92.64 | |
| KOG2521 | 350 | consensus Uncharacterized conserved protein [Funct | 92.49 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 92.45 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 92.43 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 92.33 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 92.3 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.29 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 92.27 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 92.16 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 92.1 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 91.93 | |
| PF01764 | 140 | Lipase_3: Lipase (class 3); InterPro: IPR002921 Tr | 91.89 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 91.71 | |
| cd00741 | 153 | Lipase Lipase. Lipases are esterases that can hydr | 91.6 | |
| smart00824 | 212 | PKS_TE Thioesterase. Peptide synthetases are invol | 91.47 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 90.95 | |
| PLN02606 | 306 | palmitoyl-protein thioesterase | 90.95 | |
| PF11288 | 207 | DUF3089: Protein of unknown function (DUF3089); In | 90.34 | |
| PF02089 | 279 | Palm_thioest: Palmitoyl protein thioesterase; Inte | 90.22 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 90.1 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 90.08 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 90.0 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 89.91 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 89.88 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.82 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 89.64 | |
| PF03283 | 361 | PAE: Pectinacetylesterase | 89.64 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 89.63 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 89.01 | |
| PLN02517 | 642 | phosphatidylcholine-sterol O-acyltransferase | 88.57 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 88.55 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 88.35 | |
| COG4287 | 507 | PqaA PhoPQ-activated pathogenicity-related protein | 88.3 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 87.91 |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-49 Score=455.81 Aligned_cols=600 Identities=22% Similarity=0.313 Sum_probs=422.6
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003363 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (826)
Q Consensus 102 ~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (826)
+..+|+|..++|..+..+...+.....+|+.+... ...++.. ..+..+.|||||+.++|.++.++...++
T Consensus 18 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~------~~~~~~~~spdg~~~~~~~~~~~~~~~l 87 (620)
T COG1506 18 PRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT----VRLLTFG------GGVSELRWSPDGSVLAFVSTDGGRVAQL 87 (620)
T ss_pred cccCCCCceeEEeeccccccccccccceEEEeccc----ccccccC------CcccccccCCCCCEEEEEeccCCCcceE
Confidence 34468899999998887777788888999855321 2233333 4688999999999999998555456777
Q ss_pred EEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeec
Q 003363 182 FELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 261 (826)
Q Consensus 182 ~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (826)
+.+..++ .......++ ..+.|+|+|+.+++.......... +. +......-..|..
T Consensus 88 ~l~~~~g---~~~~~~~~v----------~~~~~~~~g~~~~~~~~~~~~~~~---------~~---~~~~~~~~~~~~~ 142 (620)
T COG1506 88 YLVDVGG---LITKTAFGV----------SDARWSPDGDRIAFLTAEGASKRD---------GG---DHLFVDRLPVWFD 142 (620)
T ss_pred EEEecCC---ceeeeeccc----------ccceeCCCCCeEEEEecccccccC---------Cc---eeeeecccceeec
Confidence 7777444 222223333 688999999999994433221110 00 0000011111111
Q ss_pred CCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEE
Q 003363 262 DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 341 (826)
Q Consensus 262 d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d 341 (826)
.-| ....+++++|.++ ....+ ......+..+.|.+|++. ++........ . ..-...+...
T Consensus 143 ~~g-----~~~~~l~~~d~~~-~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~-------~~~~~~~~~~ 202 (620)
T COG1506 143 GRG-----GERSDLYVVDIES-KLIKL--GLGNLDVVSFATDGDGRL----VASIRLDDDA-D-------PWVTNLYVLI 202 (620)
T ss_pred CCC-----CcccceEEEccCc-ccccc--cCCCCceeeeeeCCCCce----eEEeeecccc-C-------CceEeeEEEe
Confidence 111 2468899999877 44444 455556666666666775 5555432220 0 0111233333
Q ss_pred cccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCccc
Q 003363 342 VSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE 421 (826)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~ 421 (826)
. .++....++........+.|.+||+.+++....... | ......+++++...+....
T Consensus 203 ~-----------------~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~d~--- 259 (620)
T COG1506 203 E-----------------GNGELESLTPGEGSISKLAFDADGKSIALLGTESDR--G-LAEGDFILLLDGELGEVDG--- 259 (620)
T ss_pred c-----------------CCCceEEEcCCCceeeeeeeCCCCCeeEEeccCCcc--C-ccccceEEEEeccccccce---
Confidence 2 467788888888889999999999999998887631 1 1233456666622222111
Q ss_pred ceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEe-CCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCC
Q 003363 422 KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGD 500 (826)
Q Consensus 422 ~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~-~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~ 500 (826)
...... . .. +.....+.-++..++|.+.. .+...++.++..++....+..+.+ ....|+.+++
T Consensus 260 ----~~~~~~----~-~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~--~v~~f~~~~~ 323 (620)
T COG1506 260 ----DLSSGD----D-TR-----GAWAVEGGLDGDGLLFIATDGGGSSPLFRVDDLGGGVEGLSGDDG--GVPGFDVDGR 323 (620)
T ss_pred ----eeccCC----c-cc-----CcHHhccccCCCcEEEEEecCCCceEEEEEeccCCceeeecCCCc--eEEEEeeCCC
Confidence 000000 0 00 00111122345556666665 677788888765555555544434 4456777999
Q ss_pred EEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhhhhcccccceeeeeecccCceeeeccCCCeeEEEEE
Q 003363 501 NIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIF 580 (826)
Q Consensus 501 ~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~ 580 (826)
.+++..+++..|+++++.+.. .. ..+. ..+. ..+....+ . +...+.+...+|.++++|+
T Consensus 324 ~~~~~~s~~~~p~~i~~~~~~-~~--~~~~---------~~~~---~~~~~~~~-----~-~~e~~~~~~~dG~~i~~~l 382 (620)
T COG1506 324 KLALAYSSPTEPPEIYLYDRG-EE--AKLT---------SSNN---SGLKKVKL-----A-EPEPVTYKSNDGETIHGWL 382 (620)
T ss_pred EEEEEecCCCCccceEEEcCC-Cc--eEEe---------eccc---cccccccc-----C-CceEEEEEcCCCCEEEEEE
Confidence 999999999999999998862 11 1110 0011 11111111 1 1112245566889999999
Q ss_pred EecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHH
Q 003363 581 VSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAID 660 (826)
Q Consensus 581 ~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~ 660 (826)
+.|.++++.+++|+||++||||.......+....+.|+++||+|+.+||||+.|||++|.+....+++..+.+|+.++++
T Consensus 383 ~~P~~~~~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~~D~~~~~~ 462 (620)
T COG1506 383 YKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVD 462 (620)
T ss_pred ecCCCCCCCCCCCEEEEeCCCCccccccccchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhhhccCCccHHHHHHHHH
Confidence 99999988888999999999998887778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCCh
Q 003363 661 HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSV 740 (826)
Q Consensus 661 ~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (826)
++.+.+.+|++||+|+|+|+||+|+++++++.| .|+++++..+.+++..+........+........ .+.+
T Consensus 463 ~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 533 (620)
T COG1506 463 ALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPEENGG--------GPPE 533 (620)
T ss_pred HHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccchhhcCCHHHhCC--------Cccc
Confidence 999999999999999999999999999999877 8999999999888887776665544433322221 1212
Q ss_pred hhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 003363 741 EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 820 (826)
Q Consensus 741 ~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w 820 (826)
+.+.+...||+.++.++++|+|||||+.|.+||.+|+++++++|+.+|+++++++||+++|++..+++....++.+++|
T Consensus 534 -~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~~~~~~~~ 612 (620)
T COG1506 534 -DREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILDW 612 (620)
T ss_pred -ChHHHHhcChhhhhcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCCCCchhHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcC
Q 003363 821 FKKYCK 826 (826)
Q Consensus 821 ~~~~l~ 826 (826)
|++|++
T Consensus 613 ~~~~~~ 618 (620)
T COG1506 613 FKRHLK 618 (620)
T ss_pred HHHHhc
Confidence 999985
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=397.39 Aligned_cols=529 Identities=15% Similarity=0.135 Sum_probs=359.6
Q ss_pred cEEEEeCCCCCeEEEEecCCC-CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~-~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
.....|||||++|||..+..+ +..+++.+. .+|... ...+.... ..+.|++||+.|+|...+....
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-~~~i~~~~----------~~~~w~~D~~~~~y~~~~~~~~- 196 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-PELLDNVE----------PSFVWANDSWTFYYVRKHPVTL- 196 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-CccccCcc----------eEEEEeeCCCEEEEEEecCCCC-
Confidence 556789999999999977653 334566666 344311 01111111 3589999999999987743100
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCC--ceEeccCCCCCCccceEEEee-CCCCCc
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG--EVQAVKGIPKSLSVGQVVWAP-LNEGLH 310 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g--~~~~l~~~~~~~~~~~~~wSP-Dg~~~~ 310 (826)
...+||++++.++ +-+.|.. ..+....-..|.+ |++.
T Consensus 197 -------------------------------------~~~~v~~h~lgt~~~~d~lv~~-e~~~~~~~~~~~s~d~~~-- 236 (686)
T PRK10115 197 -------------------------------------LPYQVWRHTIGTPASQDELVYE-EKDDTFYVSLHKTTSKHY-- 236 (686)
T ss_pred -------------------------------------CCCEEEEEECCCChhHCeEEEe-eCCCCEEEEEEEcCCCCE--
Confidence 2368999999988 4444421 1111112133545 8887
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC-CccccCceecCCCCEEEEE
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES-ISSAFFPRFSPDGKFLVFL 389 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~-~~~~~~p~~SpDG~~l~f~ 389 (826)
++..+.. +..+.+++++++. ..++.+.+... ...... +...|..|++.
T Consensus 237 --l~i~~~~------------~~~~~~~l~~~~~---------------~~~~~~~~~~~~~~~~~~--~~~~~~~ly~~ 285 (686)
T PRK10115 237 --VVIHLAS------------ATTSEVLLLDAEL---------------ADAEPFVFLPRRKDHEYS--LDHYQHRFYLR 285 (686)
T ss_pred --EEEEEEC------------CccccEEEEECcC---------------CCCCceEEEECCCCCEEE--EEeCCCEEEEE
Confidence 7654422 2234677777421 22333333222 222222 22335667666
Q ss_pred eccCCCCCCCCcccceEEEEeCCC-CCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeE
Q 003363 390 SAKSSVDSGAHSATDSLHRIDWPT-NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 468 (826)
Q Consensus 390 s~~~~~~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~ 468 (826)
++.+ .....|..+++.. +..+ .+++ ...+. .+..+.|+ ++.|++....++..
T Consensus 286 tn~~-------~~~~~l~~~~~~~~~~~~-------~l~~---~~~~~--------~i~~~~~~--~~~l~~~~~~~g~~ 338 (686)
T PRK10115 286 SNRH-------GKNFGLYRTRVRDEQQWE-------ELIP---PRENI--------MLEGFTLF--TDWLVVEERQRGLT 338 (686)
T ss_pred EcCC-------CCCceEEEecCCCcccCe-------EEEC---CCCCC--------EEEEEEEE--CCEEEEEEEeCCEE
Confidence 6653 2346788887753 1111 1111 10010 12234455 55799998889999
Q ss_pred EEEEEECCCCcEEEec-CCCCCeeeEEEe--ecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhh
Q 003363 469 VIISVNVSSGELLRIT-PAESNFSWSLLT--LDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKV 545 (826)
Q Consensus 469 ~l~~vdl~tg~~~~lt-~~~~~~~~~~~s--~dg~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (826)
.++.+++.++++..|. ..........++ ++++.+++..+++.+|+++|.++..+++ ...+ . ..+.
T Consensus 339 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~-~~~l--~-------~~~~-- 406 (686)
T PRK10115 339 SLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE-RRVL--K-------QTEV-- 406 (686)
T ss_pred EEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc-EEEE--E-------ecCC--
Confidence 9999998878888877 333222322334 5567899999999999999999976543 1111 1 1110
Q ss_pred hhcccccceeeeeecccCceeeeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEE
Q 003363 546 KSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLL 625 (826)
Q Consensus 546 ~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl 625 (826)
..+....+..+.+ .++..||.+++++++.+++....++.|+||++|||++......|....+.|+++||+|+
T Consensus 407 -~~~~~~~~~~e~v-------~~~s~DG~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~v~ 478 (686)
T PRK10115 407 -PGFDAANYRSEHL-------WITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYA 478 (686)
T ss_pred -CCcCccccEEEEE-------EEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcEEE
Confidence 0111122223332 45677889999977765543345677999999999998877889988999999999999
Q ss_pred EECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCc
Q 003363 626 IVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (826)
Q Consensus 626 ~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~ 705 (826)
.+|+||++|+|+.|++.....++..+++|+++++++|++++++|++|++++|.|+||+++.+++.++|++|+|+|+..|+
T Consensus 479 ~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~ 558 (686)
T PRK10115 479 IVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPF 558 (686)
T ss_pred EEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCc
Confidence 99999999999999998777777889999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCC-CchhhhhccCcCCccCCCCCC-hhhHHHHhhcCcccccCCCCCc-EEEEEeCCCCCCCcHHHHHHH
Q 003363 706 CNLALMVGTTDIP-DWCYVESYGSKGKDSFTESPS-VEDLTRFHSKSPISHISKVKTP-TIFLLGAQDLRVPVSNGLQYA 782 (826)
Q Consensus 706 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~~~~~~i~~P-vLii~G~~D~~vp~~~~~~~~ 782 (826)
+|+..+.....++ .+...+.+|. |. .+..+.+.+.||+.++.+++.| +||+||.+|.+||+.++.+++
T Consensus 559 ~D~~~~~~~~~~p~~~~~~~e~G~---------p~~~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~~~~~~k~~ 629 (686)
T PRK10115 559 VDVVTTMLDESIPLTTGEFEEWGN---------PQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWV 629 (686)
T ss_pred hhHhhhcccCCCCCChhHHHHhCC---------CCCHHHHHHHHHcCchhccCccCCCceeEEecCCCCCcCchHHHHHH
Confidence 9998765443333 3333344443 33 3445666789999999999999 677799999999999999999
Q ss_pred HHHHhCCCCEEEEEe---CCCCCCCCCCCCHHHHHHH---HHHHHHHHc
Q 003363 783 RALREKGVETKVIVF---PNDVHGIERPQSDFESFLN---IGLWFKKYC 825 (826)
Q Consensus 783 ~~l~~~g~~~~~~~~---p~~~H~~~~~~~~~~~~~~---i~~w~~~~l 825 (826)
++|++++++++++++ +++||+. ..+..+.+++ ...|+-..+
T Consensus 630 a~Lr~~~~~~~~vl~~~~~~~GHg~--~~~r~~~~~~~A~~~aFl~~~~ 676 (686)
T PRK10115 630 AKLRELKTDDHLLLLCTDMDSGHGG--KSGRFKSYEGVAMEYAFLIALA 676 (686)
T ss_pred HHHHhcCCCCceEEEEecCCCCCCC--CcCHHHHHHHHHHHHHHHHHHh
Confidence 999999999888888 9999984 3444444443 455665544
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=357.27 Aligned_cols=613 Identities=18% Similarity=0.232 Sum_probs=395.2
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003363 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (826)
Q Consensus 103 ~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (826)
..|||.+.+.+..+....-.........++.+..+. .+... ..+........|||.|++++|+.+++ ++
T Consensus 103 ~~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~wsp~~~~l~yv~~~n-----iy 171 (755)
T KOG2100|consen 103 LISPDRKYILLGRNYKKRFRHSYTAKYHLYDLNTGE----KLHPP--EYEGSKIQYASWSPLGNDLAYVLHNN-----IY 171 (755)
T ss_pred ccChhhhhheeccCcccccceeeEEEEEEEEcCCCC----cccCc--ccCCCeeEEEEEcCCCCEEEEEEecc-----cc
Confidence 557898888877654433444444555555554332 11111 11113357899999999999998765 21
Q ss_pred EEe-cCCceeEEEe------cCCCccccccCCCcc---cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCC
Q 003363 183 ELW-SQSQLEKEFH------VPQTVHGSVYADGWF---EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNS 252 (826)
Q Consensus 183 ~i~-~~~~~~~~~~------~~~~~~g~v~~~~~~---~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (826)
.-. ......+++. .-.+..+++|.++.+ ..+.|||||..++|...............+... ...+....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~ng~~Dw~yeeEv~~~~~a~wwsp~g~~la~~~~~dt~V~~~~~~~~~~~-~~yp~~~~ 250 (755)
T KOG2100|consen 172 YQSSEEDEDVRIVSNGGEDVIFNGKPDWIYEEEVLSSDSAIWWSPDGDRLAYASFNDTKVETINLPGYTDD-DQYPKSTN 250 (755)
T ss_pred cccCcCCCceEEEecCCCceEEcCCCCceeehhhcccCccceeCCCCceeEEEEecccccceEEecccccc-ccCcccce
Confidence 111 1111111111 123566778886644 467799999999998876543211100111111 01110001
Q ss_pred CCCcceeecCCCccCCCccCceEEEEEccCCceEecc----CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeee
Q 003363 253 WKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK----GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK 328 (826)
Q Consensus 253 ~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~----~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~ 328 (826)
..|... |. ......|+++|........+. .......+..+.|.-+.+ +.++..
T Consensus 251 ----~~ypk~-g~---~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-----~~~~~~---------- 307 (755)
T KOG2100|consen 251 ----FHYPKA-GA---PNPAVSLFVVDLHDPPRLGIPPPTNQRSGEYYVTNVKWDTTEK-----VLVVWT---------- 307 (755)
T ss_pred ----eecCCC-CC---CCCeEEEEEEeCCCceeeccCCccccccCceEEEEEEEecCcc-----EEEEEE----------
Confidence 111111 11 113467888885544333211 011223455677887755 444321
Q ss_pred eeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc----eecCCC-Ccc--ccCceecCCCCEEEEEeccCCCCCCCCc
Q 003363 329 YCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV----VNLTES-ISS--AFFPRFSPDGKFLVFLSAKSSVDSGAHS 401 (826)
Q Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~Lt~~-~~~--~~~p~~SpDG~~l~f~s~~~~~~~g~~~ 401 (826)
+|...+-...+... . +.+ +....+ ... ...|.++.|+....+...... +
T Consensus 308 ---~r~~~~~~~~~cd~--------------~-~~~~~~~~~~~~~~W~~~~~~~~~~~~d~~~~~~~~~~~~---~--- 363 (755)
T KOG2100|consen 308 ---NREQNISVETLCDT--------------P-GICRVVYEESSDGGWVEHQNVEPVFSSDGSSYLKVDSVSD---G--- 363 (755)
T ss_pred ---ccCCCeeeeEEecC--------------c-ccceeeEeccccccccccccccceEeecCCceeEEEeecc---C---
Confidence 12222222222110 1 111 011111 111 235889999865555544431 1
Q ss_pred ccceEEEEeCCCC-CCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEe--CCeEEEEEEECCCC
Q 003363 402 ATDSLHRIDWPTN-GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW--GSSQVIISVNVSSG 478 (826)
Q Consensus 402 ~~~~l~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~--~~~~~l~~vdl~tg 478 (826)
...++..+.+..+ ..+.++.+...+..+ +.|+.|++.++|.+.. .+..+||.+++.++
T Consensus 364 ~~~hi~~~~~~~~~~~~~lt~g~w~v~~i-------------------~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~ 424 (755)
T KOG2100|consen 364 GYNHIAYLKLSNGSEPRMLTSGNWEVTSI-------------------LGYDKDSNRIYFDAYEEDPSERHLYSISLGSG 424 (755)
T ss_pred CEEEEEEEEcCCCCccccccccceEEEEe-------------------ccccCCCceEEEEecCCCCCceEEEEEEcccc
Confidence 1467777776665 445566666655432 2355788899999887 47789999999998
Q ss_pred cEEEecCCCC----CeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhhhhcccccce
Q 003363 479 ELLRITPAES----NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQF 554 (826)
Q Consensus 479 ~~~~lt~~~~----~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 554 (826)
....++.... .+....++...+.++..+..|..|.. .+.......... +.. .+.|..+++.+....+
T Consensus 425 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~gP~~p~~-~~~~~~~~~~~~---~~~-----Le~n~~~~~~~~~~~~ 495 (755)
T KOG2100|consen 425 TVESLTCSLITGPCTYLSVSFSKSAKYYVLSCSGPKVPDG-QLTRHSSKNSKT---IVV-----LETNEELKKTIENVAL 495 (755)
T ss_pred ccccccccCCCCcceEEEEecCCcccEEEEEccCCCCCcc-eeeccccccceE---EEE-----eccChhhHHHhhcccC
Confidence 8888776554 23334555566788888888888864 222222221111 111 2345555555543322
Q ss_pred eeeeecccCceeeeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc---cchHHHHHHHHCCcEEEEECCCC
Q 003363 555 SIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRG 631 (826)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~---~~~~~~~~la~~G~~Vl~~d~rG 631 (826)
|..++. ....+|...+..++.|+++++.+++|++|.+||||.++... ........+...|++|+.+|+||
T Consensus 496 -----p~~~~~--~i~~~~~~~~~~~~lP~~~~~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RG 568 (755)
T KOG2100|consen 496 -----PIVEFG--KIEIDGITANAILILPPNFDPSKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRG 568 (755)
T ss_pred -----CcceeE--EEEeccEEEEEEEecCCCCCCCCCCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCC
Confidence 222211 11227788999999999999999999999999999754332 22334456789999999999999
Q ss_pred CCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCC-CceeEEEecCCccchhh
Q 003363 632 SLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP-DKFVAAAARNPLCNLAL 710 (826)
Q Consensus 632 ~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p-~~~~a~v~~~p~~~~~~ 710 (826)
++++|..++..+++++|..+++|+..+++++++++++|.+||+|+|+|+||+++++++.+.+ +.|+|+++++|++|+.
T Consensus 569 s~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~- 647 (755)
T KOG2100|consen 569 SGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL- 647 (755)
T ss_pred cCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee-
Confidence 99999999999999999999999999999999999999999999999999999999999987 7899999999999987
Q ss_pred hccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcE-EEEEeCCCCCCCcHHHHHHHHHHHhCC
Q 003363 711 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPT-IFLLGAQDLRVPVSNGLQYARALREKG 789 (826)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~Pv-Lii~G~~D~~vp~~~~~~~~~~l~~~g 789 (826)
++...... ++++.+. ++...|.+.++...+..++.|. |++||+.|..|+++|+.+++++|+.+|
T Consensus 648 ~yds~~te--------------rymg~p~-~~~~~y~e~~~~~~~~~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~g 712 (755)
T KOG2100|consen 648 YYDSTYTE--------------RYMGLPS-ENDKGYEESSVSSPANNIKTPKLLLIHGTEDDNVHFQQSAILIKALQNAG 712 (755)
T ss_pred eecccccH--------------hhcCCCc-cccchhhhccccchhhhhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCC
Confidence 44333222 2333443 2223378888999999988775 999999999999999999999999999
Q ss_pred CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 790 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 790 ~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
+++++++||+++|++...+.....+..+..||...+
T Consensus 713 v~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~ 748 (755)
T KOG2100|consen 713 VPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDCF 748 (755)
T ss_pred CceEEEEeCCCCcccccccchHHHHHHHHHHHHHHc
Confidence 999999999999999988887899999999998654
|
|
| >KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=298.94 Aligned_cols=340 Identities=19% Similarity=0.262 Sum_probs=262.9
Q ss_pred CCEEEEEEEeCC--eEEEEEEECC-CCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeee
Q 003363 455 GCTMLLSSIWGS--SQVIISVNVS-SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSW 531 (826)
Q Consensus 455 g~~l~~~~~~~~--~~~l~~vdl~-tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~ 531 (826)
.+.+||....++ ..+||.+... .|++.+||.....+.. .++.+=+.++...++-..|+.+.++.+...+..
T Consensus 515 ~~LVYf~gt~d~PlE~hLyvvsye~~g~~~rlt~~g~sh~~-~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~~----- 588 (867)
T KOG2281|consen 515 RKLVYFVGTKDTPLEHHLYVVSYENPGEIARLTEPGYSHSC-ELDQQCDHFVSYYSSVGSPPCVSLYSLSWPEND----- 588 (867)
T ss_pred ceEEEEEccCCCCceeeEEEEEEecCCceeeccCCCcccch-hhhhhhhhHhhhhhcCCCCceEEEEeccCCccC-----
Confidence 356777766554 4589999887 8999999987654432 355555567888899999999999988765411
Q ss_pred eccCCCCCCCchhhhhcccccceeeeeecccCceeeeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cc
Q 003363 532 LNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SY 610 (826)
Q Consensus 532 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~ 610 (826)
|+........-+++...-...-.|. .-+.+....|..+.|.+|+|.++++++++|+|++++|||..+... .|
T Consensus 589 -----~l~~q~~~~~~l~~~~~~~Pdy~p~--eif~fqs~tg~~lYgmiyKPhn~~pgkkYptvl~VYGGP~VQlVnnsf 661 (867)
T KOG2281|consen 589 -----PLPKQVSFWAILVSGAPPPPDYVPP--EIFSFQSKTGLTLYGMIYKPHNFQPGKKYPTVLNVYGGPGVQLVNNSF 661 (867)
T ss_pred -----cccchhhHHHHHHhcCCCCCccCCh--hheeeecCCCcEEEEEEEccccCCCCCCCceEEEEcCCCceEEeeccc
Confidence 1111111111111111111111111 112345567889999999999999999999999999999876432 23
Q ss_pred h----HHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcC-CCCCCcEEEEEecchHHHH
Q 003363 611 S----KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLT 685 (826)
Q Consensus 611 ~----~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~-~~d~~rv~l~G~S~GG~~a 685 (826)
. .....|+++||.|+.+|.||+.-.|..|...+..++|..+++|...++++|.++. ++|.+||+|.|||+|||++
T Consensus 662 kgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLS 741 (867)
T KOG2281|consen 662 KGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLS 741 (867)
T ss_pred cceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHH
Confidence 2 2355789999999999999999999999999999999999999999999999974 8999999999999999999
Q ss_pred HHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCC---CcE
Q 003363 686 THLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK---TPT 762 (826)
Q Consensus 686 ~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~---~Pv 762 (826)
+++++++|+.|+++|+.+|+.+|..+ .....++|++.|. .+...|...|...++.++. -.+
T Consensus 742 lm~L~~~P~IfrvAIAGapVT~W~~Y---------------DTgYTERYMg~P~-~nE~gY~agSV~~~VeklpdepnRL 805 (867)
T KOG2281|consen 742 LMGLAQYPNIFRVAIAGAPVTDWRLY---------------DTGYTERYMGYPD-NNEHGYGAGSVAGHVEKLPDEPNRL 805 (867)
T ss_pred HHHhhcCcceeeEEeccCcceeeeee---------------cccchhhhcCCCc-cchhcccchhHHHHHhhCCCCCceE
Confidence 99999999999999999999986543 2223456777774 2335666667767777663 459
Q ss_pred EEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 763 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 763 Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
|++||--|+.|.+.+.-.+..+|.++|++.++.+||++.|++..++.....-.+++.|+.+
T Consensus 806 lLvHGliDENVHF~Hts~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 806 LLVHGLIDENVHFAHTSRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred EEEecccccchhhhhHHHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999988888889999876
|
|
| >PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=262.39 Aligned_cols=206 Identities=34% Similarity=0.583 Sum_probs=176.0
Q ss_pred cchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHH
Q 003363 609 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHL 688 (826)
Q Consensus 609 ~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~ 688 (826)
.|+...++|+++||+|+.+||||++++|..+.......++..+++|+.++++++++++.+|++||+|+|+|+||++++.+
T Consensus 2 ~f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~ 81 (213)
T PF00326_consen 2 SFNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLA 81 (213)
T ss_dssp --SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHH
T ss_pred eeeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchh
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCceeEEEecCCccchhhhccCCCCCCchh--hhhccCcCCccCCCCCChhhHHHHhhcCcccccCC--CCCcEEE
Q 003363 689 IGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY--VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK--VKTPTIF 764 (826)
Q Consensus 689 a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~--i~~PvLi 764 (826)
+.++|++|+++|+.+|+.++..+....+. +.. ...++. ..+..+.+...+|+..+.+ +++|+||
T Consensus 82 ~~~~~~~f~a~v~~~g~~d~~~~~~~~~~--~~~~~~~~~~~----------~~~~~~~~~~~s~~~~~~~~~~~~P~li 149 (213)
T PF00326_consen 82 ATQHPDRFKAAVAGAGVSDLFSYYGTTDI--YTKAEYLEYGD----------PWDNPEFYRELSPISPADNVQIKPPVLI 149 (213)
T ss_dssp HHHTCCGSSEEEEESE-SSTTCSBHHTCC--HHHGHHHHHSS----------TTTSHHHHHHHHHGGGGGGCGGGSEEEE
T ss_pred hcccceeeeeeeccceecchhcccccccc--cccccccccCc----------cchhhhhhhhhccccccccccCCCCEEE
Confidence 99999999999999999998766554433 111 111111 1234566777888888888 8999999
Q ss_pred EEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 765 LLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 765 i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
+||++|.+||+.++.+++++|+++|+++++++||+++|++..++...+++.++++||+++|+
T Consensus 150 ~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~ 211 (213)
T PF00326_consen 150 IHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLK 211 (213)
T ss_dssp EEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred EccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999998888888999999999999986
|
; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B .... |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=260.38 Aligned_cols=285 Identities=16% Similarity=0.200 Sum_probs=212.8
Q ss_pred HHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeC
Q 003363 83 SKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPS 162 (826)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~S 162 (826)
-.++++++..+.+. +++|+|+....+...+++++.||+++. +|++.++||... .....|+||
T Consensus 132 D~~~~~~tg~~g~~-----------~~~iayv~~~~~~~~~~~~~~l~~~d~--dG~~~~~lt~~~-----~~~~sP~wS 193 (428)
T PRK01029 132 DTIHYALTGVPGIS-----------SGKIIFSLSTTNSDTELKQGELWSVDY--DGQNLRPLTQEH-----SLSITPTWM 193 (428)
T ss_pred HHHHHHHcCCCccc-----------cCEEEEEEeeCCcccccccceEEEEcC--CCCCceEcccCC-----CCcccceEc
Confidence 34566666666555 477889988877676677889999875 456778888765 447889999
Q ss_pred CCCCe--EEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCC
Q 003363 163 PSGSK--LLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 239 (826)
Q Consensus 163 PdG~~--la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~ 239 (826)
|||++ ++|++..+ +..++|.++ .+++.++++...... ..++|||||++|||++...
T Consensus 194 PDG~~~~~~y~S~~~-g~~~I~~~~l~~g~~~~lt~~~g~~----------~~p~wSPDG~~Laf~s~~~---------- 252 (428)
T PRK01029 194 HIGSGFPYLYVSYKL-GVPKIFLGSLENPAGKKILALQGNQ----------LMPTFSPRKKLLAFISDRY---------- 252 (428)
T ss_pred cCCCceEEEEEEccC-CCceEEEEECCCCCceEeecCCCCc----------cceEECCCCCEEEEEECCC----------
Confidence 99998 55687765 678999999 778888888766554 6799999999999987542
Q ss_pred CCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEE--EEccC---CceEeccCCCCC-CccceEEEeeCCCCCccEE
Q 003363 240 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFV--ININS---GEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v--~d~~~---g~~~~l~~~~~~-~~~~~~~wSPDg~~~~~~l 313 (826)
+..+||+ +++++ ++.+++ +... .....++|||||+. |
T Consensus 253 -------------------------------g~~di~~~~~~~~~g~~g~~~~l--t~~~~~~~~~p~wSPDG~~----L 295 (428)
T PRK01029 253 -------------------------------GNPDLFIQSFSLETGAIGKPRRL--LNEAFGTQGNPSFSPDGTR----L 295 (428)
T ss_pred -------------------------------CCcceeEEEeecccCCCCcceEe--ecCCCCCcCCeEECCCCCE----E
Confidence 2245666 45553 566777 3333 23467899999999 9
Q ss_pred EEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccC
Q 003363 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (826)
Q Consensus 314 vf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~ 393 (826)
+|+++.. ...+||.++++. .++..++|+........|.|||||++|+|.+.+.
T Consensus 296 af~s~~~------------g~~~ly~~~~~~---------------~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 296 VFVSNKD------------GRPRIYIMQIDP---------------EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK 348 (428)
T ss_pred EEEECCC------------CCceEEEEECcc---------------cccceEEeccCCCCccceeECCCCCEEEEEEcCC
Confidence 9998432 223799998731 2355778887766778999999999999998764
Q ss_pred CCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003363 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (826)
Q Consensus 394 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~v 473 (826)
+..+|+++|+.+++.+.++.... ....+.|+|||+.|+|.+...+...||.+
T Consensus 349 --------g~~~I~v~dl~~g~~~~Lt~~~~--------------------~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 349 --------GVRQICVYDLATGRDYQLTTSPE--------------------NKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred --------CCcEEEEEECCCCCeEEccCCCC--------------------CccceEECCCCCEEEEEECCCCCceEEEE
Confidence 24689999999887765553210 12367899999999998887788899999
Q ss_pred ECCCCcEEEecCCCCCeeeEEEeec
Q 003363 474 NVSSGELLRITPAESNFSWSLLTLD 498 (826)
Q Consensus 474 dl~tg~~~~lt~~~~~~~~~~~s~d 498 (826)
|+++++.++|+...+....+.|+|-
T Consensus 401 dl~~g~~~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 401 SLITKKTRKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred ECCCCCEEEeecCCCcccCceecCC
Confidence 9999999999876665556677764
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-24 Score=228.15 Aligned_cols=323 Identities=17% Similarity=0.167 Sum_probs=244.0
Q ss_pred CCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCee-eEEE--eecCCEEEEEEeCCCCCCeEEEEeecccCCCceeee
Q 003363 455 GCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFS-WSLL--TLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSW 531 (826)
Q Consensus 455 g~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~-~~~~--s~dg~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~ 531 (826)
.++|++.-...+...++..+..+++..-|..++..+. +... ..+...|.+..+++++|.+++-+|+.+++ .+.+.-
T Consensus 327 ~~~lVl~eR~~glp~v~v~~~~~~~~~~i~f~~~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~e-r~~Lkq 405 (682)
T COG1770 327 ADHLVLLERQEGLPRVVVRDRKTGEERGIAFDDEAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGE-RTLLKQ 405 (682)
T ss_pred ccEEEEEecccCCceEEEEecCCCceeeEEecchhhhccccCCCCCCCccEEEEeecccccceeEEeeccCCc-EEEEEe
Confidence 4568777777888899999999999888876655222 1122 33677899999999999999999998765 111111
Q ss_pred eccCCCCCC-CchhhhhcccccceeeeeecccCceeeeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccc
Q 003363 532 LNVSSPISR-CPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY 610 (826)
Q Consensus 532 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~ 610 (826)
. ++.. +++ .......+. .+..+|..+...++.-++.+-.++.|++|+.+|..+......|
T Consensus 406 q----eV~~g~dp--------~~Y~s~riw-------a~a~dgv~VPVSLvyrkd~~~~g~~p~lLygYGaYG~s~~p~F 466 (682)
T COG1770 406 Q----EVPGGFDP--------EDYVSRRIW-------ATADDGVQVPVSLVYRKDTKLDGSAPLLLYGYGAYGISMDPSF 466 (682)
T ss_pred c----cCCCCCCh--------hHeEEEEEE-------EEcCCCcEeeEEEEEecccCCCCCCcEEEEEeccccccCCcCc
Confidence 1 1211 222 122222221 1235777787778877776678899999999998887777788
Q ss_pred hHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHH
Q 003363 611 SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG 690 (826)
Q Consensus 611 ~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~ 690 (826)
+...-.|..+||+..+...||.+.-|+.|.++.......+.+.|++++.++|+++++.++++|+++|.|+||.++..++.
T Consensus 467 s~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N 546 (682)
T COG1770 467 SIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVAN 546 (682)
T ss_pred ccceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHh
Confidence 87667788999999999999999999999988777777788999999999999999999999999999999999999999
Q ss_pred hCCCceeEEEecCCccchhhhccCCCCCC-chhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCC-CcEEEEEeC
Q 003363 691 QAPDKFVAAAARNPLCNLALMVGTTDIPD-WCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK-TPTIFLLGA 768 (826)
Q Consensus 691 ~~p~~~~a~v~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~PvLii~G~ 768 (826)
..|++|+++|+..|++|...-.....+|- -.-..++|. ....+..+.+...||+.++..-. +|+|++.|.
T Consensus 547 ~~P~lf~~iiA~VPFVDvltTMlD~slPLT~~E~~EWGN--------P~d~e~y~yikSYSPYdNV~a~~YP~ilv~~Gl 618 (682)
T COG1770 547 MAPDLFAGIIAQVPFVDVLTTMLDPSLPLTVTEWDEWGN--------PLDPEYYDYIKSYSPYDNVEAQPYPAILVTTGL 618 (682)
T ss_pred hChhhhhheeecCCccchhhhhcCCCCCCCccchhhhCC--------cCCHHHHHHHhhcCchhccccCCCCceEEEccc
Confidence 99999999999999999753322222221 001122232 23456677788899999988754 679999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCCC---CEEEEEeCCCCCCCC
Q 003363 769 QDLRVPVSNGLQYARALREKGV---ETKVIVFPNDVHGIE 805 (826)
Q Consensus 769 ~D~~vp~~~~~~~~~~l~~~g~---~~~~~~~p~~~H~~~ 805 (826)
.|++|.+.+..++.++|+..+. ++-+..--++||+-.
T Consensus 619 ~D~rV~YwEpAKWvAkLR~~~td~~plLlkt~M~aGHgG~ 658 (682)
T COG1770 619 NDPRVQYWEPAKWVAKLRELKTDGNPLLLKTNMDAGHGGA 658 (682)
T ss_pred cCCccccchHHHHHHHHhhcccCCCcEEEEecccccCCCC
Confidence 9999999999999999998754 455555568999754
|
|
| >COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.5e-25 Score=231.54 Aligned_cols=344 Identities=17% Similarity=0.222 Sum_probs=261.5
Q ss_pred CCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC-CCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccCCC
Q 003363 448 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANK 526 (826)
Q Consensus 448 ~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~~~ 526 (826)
.+.+..| .|+...-.+-..++...+..+-+.+.|.... +.......+.+|+.+++..++.++|++++..++.+.+ .
T Consensus 301 ~v~tt~~--~~va~~l~nv~~~l~v~~~~g~~~~~v~l~~~ga~~~~~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~e-L 377 (648)
T COG1505 301 QVVTTKD--KLVAGTLDNVSGRLEVYDLKGERIEEVELPPPGALGMGSADKDGDEVFLAFTSFTTPSTLYRLDLFGGE-L 377 (648)
T ss_pred eeEEEcC--eEEeeeehhccceEEEeccCceEeeecccCCccceeeccCCCCCcEEEEEeecccCCCceEEEecCCce-e
Confidence 4445544 2544444343335666666554444554332 2233223445788899999999999999999987664 1
Q ss_pred ceeeeeccCCCCCCCchhhhhcccccceeeeeecccCceeeeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC
Q 003363 527 GTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS 606 (826)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~ 606 (826)
..+ -++..+ .....+++.+. ..++.||..++++++. ++.+.+ +.|++|+-+||.....
T Consensus 378 e~i-----k~~p~~--------FDa~~~~veQ~-------~atSkDGT~IPYFiv~-K~~~~d-~~pTll~aYGGF~vsl 435 (648)
T COG1505 378 EVI-----REQPVQ--------FDADNYEVEQF-------FATSKDGTRIPYFIVR-KGAKKD-ENPTLLYAYGGFNISL 435 (648)
T ss_pred hhh-----hhccCC--------cCccCceEEEE-------EEEcCCCccccEEEEe-cCCcCC-CCceEEEecccccccc
Confidence 111 000001 11222232222 3455677889989998 765555 8999999999998887
Q ss_pred CccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHH
Q 003363 607 LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT 686 (826)
Q Consensus 607 ~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~ 686 (826)
...|......+.++|...+..|.||.++||..|+++.......+.++|+.++++.|+++++..+++++|.|.|-||.++.
T Consensus 436 tP~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg 515 (648)
T COG1505 436 TPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVG 515 (648)
T ss_pred CCccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEE
Confidence 88898888888999999999999999999999998887777777899999999999999999999999999999999999
Q ss_pred HHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCC--CCcEEE
Q 003363 687 HLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV--KTPTIF 764 (826)
Q Consensus 687 ~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i--~~PvLi 764 (826)
.+++++|++|.|+|+..|+.||..+........| +.+||. ...+++...+.+.||+.+++.- -+|+||
T Consensus 516 ~alTQrPelfgA~v~evPllDMlRYh~l~aG~sW--~~EYG~--------Pd~P~d~~~l~~YSPy~nl~~g~kYP~~LI 585 (648)
T COG1505 516 AALTQRPELFGAAVCEVPLLDMLRYHLLTAGSSW--IAEYGN--------PDDPEDRAFLLAYSPYHNLKPGQKYPPTLI 585 (648)
T ss_pred eeeccChhhhCceeeccchhhhhhhcccccchhh--HhhcCC--------CCCHHHHHHHHhcCchhcCCccccCCCeEE
Confidence 9999999999999999999999877655444344 455554 3346778888999999998763 378999
Q ss_pred EEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCH-HHHHHHHHHHHHHHcC
Q 003363 765 LLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD-FESFLNIGLWFKKYCK 826 (826)
Q Consensus 765 i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~-~~~~~~i~~w~~~~l~ 826 (826)
..+..|.+|+|.++++++.+|++.+.++-+.+--++||+-..+... ......+..||.+.|+
T Consensus 586 TTs~~DDRVHPaHarKfaa~L~e~~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~L~ 648 (648)
T COG1505 586 TTSLHDDRVHPAHARKFAAKLQEVGAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRTLG 648 (648)
T ss_pred EcccccccccchHHHHHHHHHHhcCCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999998888999987766554 3455678889988874
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=248.77 Aligned_cols=279 Identities=16% Similarity=0.205 Sum_probs=207.9
Q ss_pred HHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEe
Q 003363 82 LSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVP 161 (826)
Q Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~ 161 (826)
...+|+.++..+.... ++|+|.....+ +++++.||+++.+ +.+.+++|..+ ..+..|+|
T Consensus 148 ~d~i~~~ltg~~g~f~-----------~riayv~~~~~---~~~~~~l~~~d~d--g~~~~~lt~~~-----~~~~~p~w 206 (429)
T PRK03629 148 SDEVFEKLTGIKGAFR-----------TRIAYVVQTNG---GQFPYELRVSDYD--GYNQFVVHRSP-----QPLMSPAW 206 (429)
T ss_pred HHHHHHHhcCCCCccC-----------CeEEEEEeeCC---CCcceeEEEEcCC--CCCCEEeecCC-----CceeeeEE
Confidence 3457777777666554 56778876443 3567899998864 44567777665 45889999
Q ss_pred CCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCC
Q 003363 162 SPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGS 240 (826)
Q Consensus 162 SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~ 240 (826)
||||++|||++... +..+++..+ .+++.++++...... ..+.|||||++|+|+....
T Consensus 207 SPDG~~la~~s~~~-g~~~i~i~dl~~G~~~~l~~~~~~~----------~~~~~SPDG~~La~~~~~~----------- 264 (429)
T PRK03629 207 SPDGSKLAYVTFES-GRSALVIQTLANGAVRQVASFPRHN----------GAPAFSPDGSKLAFALSKT----------- 264 (429)
T ss_pred cCCCCEEEEEEecC-CCcEEEEEECCCCCeEEccCCCCCc----------CCeEECCCCCEEEEEEcCC-----------
Confidence 99999999998654 556777777 566666666554433 5799999999999985432
Q ss_pred CCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecC
Q 003363 241 TKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSS 320 (826)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~ 320 (826)
+..+||++|+++++.+++ +........+.|||||+. |+|++.+.
T Consensus 265 ------------------------------g~~~I~~~d~~tg~~~~l--t~~~~~~~~~~wSPDG~~----I~f~s~~~ 308 (429)
T PRK03629 265 ------------------------------GSLNLYVMDLASGQIRQV--TDGRSNNTEPTWFPDSQN----LAYTSDQA 308 (429)
T ss_pred ------------------------------CCcEEEEEECCCCCEEEc--cCCCCCcCceEECCCCCE----EEEEeCCC
Confidence 235799999999999999 455556778999999999 99998432
Q ss_pred cceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCC
Q 003363 321 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAH 400 (826)
Q Consensus 321 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~ 400 (826)
...+||.+|+ ++++.++|+........|.|||||++|+|.+.+.
T Consensus 309 ------------g~~~Iy~~d~-----------------~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~------- 352 (429)
T PRK03629 309 ------------GRPQVYKVNI-----------------NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG------- 352 (429)
T ss_pred ------------CCceEEEEEC-----------------CCCCeEEeecCCCCccCEEECCCCCEEEEEEccC-------
Confidence 1237999998 7778888887666667899999999999998764
Q ss_pred cccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcE
Q 003363 401 SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL 480 (826)
Q Consensus 401 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~ 480 (826)
+..+|+++|+.++..+.++... ....+.|+|||+.|++.+..++...|+.++++++..
T Consensus 353 -g~~~I~~~dl~~g~~~~Lt~~~---------------------~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~ 410 (429)
T PRK03629 353 -GQQHIAKQDLATGGVQVLTDTF---------------------LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 410 (429)
T ss_pred -CCceEEEEECCCCCeEEeCCCC---------------------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe
Confidence 2467999999887655444211 113678999999999998877788899999988888
Q ss_pred EEecCCCCCeeeEEEee
Q 003363 481 LRITPAESNFSWSLLTL 497 (826)
Q Consensus 481 ~~lt~~~~~~~~~~~s~ 497 (826)
++|+...+....+.|+|
T Consensus 411 ~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 411 ARLPATDGQVKFPAWSP 427 (429)
T ss_pred EECccCCCCcCCcccCC
Confidence 88876555444455554
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-24 Score=240.19 Aligned_cols=278 Identities=13% Similarity=0.122 Sum_probs=202.8
Q ss_pred HHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeC
Q 003363 83 SKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPS 162 (826)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~S 162 (826)
..+++.++..+.+.. .+|+|...... .+...+.||+++. .+...+++|... ..+..|+||
T Consensus 151 d~i~~~ltg~~g~f~-----------~~iafv~~~~~--~~~~~~~l~~~d~--dg~~~~~lt~~~-----~~v~~p~wS 210 (435)
T PRK05137 151 DAIYERLTGEKGYFD-----------TRIVYVAESGP--KNKRIKRLAIMDQ--DGANVRYLTDGS-----SLVLTPRFS 210 (435)
T ss_pred HHHHHHHhCCCCcCC-----------CeEEEEEeeCC--CCCcceEEEEECC--CCCCcEEEecCC-----CCeEeeEEC
Confidence 457778877664432 46778765321 1234678999875 455667787665 458899999
Q ss_pred CCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCC
Q 003363 163 PSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST 241 (826)
Q Consensus 163 PdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~ 241 (826)
|||++|+|++..+ +..+++.++ .+++.++++...... ..++|||||++|+|.....
T Consensus 211 pDG~~lay~s~~~-g~~~i~~~dl~~g~~~~l~~~~g~~----------~~~~~SPDG~~la~~~~~~------------ 267 (435)
T PRK05137 211 PNRQEITYMSYAN-GRPRVYLLDLETGQRELVGNFPGMT----------FAPRFSPDGRKVVMSLSQG------------ 267 (435)
T ss_pred CCCCEEEEEEecC-CCCEEEEEECCCCcEEEeecCCCcc----------cCcEECCCCCEEEEEEecC------------
Confidence 9999999998764 557788777 566666666544333 6889999999999986532
Q ss_pred CCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCc
Q 003363 242 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 321 (826)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~ 321 (826)
+..+||++|+++++++++ +........+.|||||++ |+|++.+.
T Consensus 268 -----------------------------g~~~Iy~~d~~~~~~~~L--t~~~~~~~~~~~spDG~~----i~f~s~~~- 311 (435)
T PRK05137 268 -----------------------------GNTDIYTMDLRSGTTTRL--TDSPAIDTSPSYSPDGSQ----IVFESDRS- 311 (435)
T ss_pred -----------------------------CCceEEEEECCCCceEEc--cCCCCccCceeEcCCCCE----EEEEECCC-
Confidence 347899999999999999 444444567999999999 99988432
Q ss_pred ceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCc
Q 003363 322 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401 (826)
Q Consensus 322 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~ 401 (826)
...+||++|+ ++++.++|+...+....|.|||||++|+|.+...
T Consensus 312 -----------g~~~Iy~~d~-----------------~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~-------- 355 (435)
T PRK05137 312 -----------GSPQLYVMNA-----------------DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGG-------- 355 (435)
T ss_pred -----------CCCeEEEEEC-----------------CCCCeEEeecCCCcccCeEECCCCCEEEEEEcCC--------
Confidence 2237999998 7888889987766677899999999999988653
Q ss_pred ccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCe---EEEEEEECCCC
Q 003363 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS---QVIISVNVSSG 478 (826)
Q Consensus 402 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~---~~l~~vdl~tg 478 (826)
+..+|+++|+.++..+.++.+. ....+.|+|||+.|+|.+...+. ..||.+|++++
T Consensus 356 ~~~~i~~~d~~~~~~~~lt~~~---------------------~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 356 GQFSIGVMKPDGSGERILTSGF---------------------LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CceEEEEEECCCCceEeccCCC---------------------CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 2468999998765544333211 12467899999999998876554 68999999988
Q ss_pred cEEEecCCCCCeeeEEEee
Q 003363 479 ELLRITPAESNFSWSLLTL 497 (826)
Q Consensus 479 ~~~~lt~~~~~~~~~~~s~ 497 (826)
+.++|+. .+....+.|++
T Consensus 415 ~~~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 415 NEREVPT-PGDASDPAWSP 432 (435)
T ss_pred ceEEccC-CCCccCcccCC
Confidence 8888764 33344445554
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-24 Score=237.04 Aligned_cols=278 Identities=15% Similarity=0.174 Sum_probs=202.4
Q ss_pred HHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeC
Q 003363 83 SKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPS 162 (826)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~S 162 (826)
-.+|+.++..+..... +++|...... ++....|++++. ++.+.++++..+ ..+..|+||
T Consensus 168 d~i~~~ltG~~g~f~~-----------riayv~~~~~---~~~~~~l~i~d~--dG~~~~~l~~~~-----~~~~~p~wS 226 (448)
T PRK04792 168 DIVYEKLTGERGAFLT-----------RIAYVVVNDK---DKYPYQLMIADY--DGYNEQMLLRSP-----EPLMSPAWS 226 (448)
T ss_pred HHHHHHhcCCCccccC-----------EEEEEEeeCC---CCCceEEEEEeC--CCCCceEeecCC-----CcccCceEC
Confidence 4577777777666554 4457654432 234567888764 444556777665 457889999
Q ss_pred CCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCC
Q 003363 163 PSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST 241 (826)
Q Consensus 163 PdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~ 241 (826)
|||++|+|++..+ +..++|.++ .+++.++++...... ..++|||||++|+|.....
T Consensus 227 PDG~~La~~s~~~-g~~~L~~~dl~tg~~~~lt~~~g~~----------~~~~wSPDG~~La~~~~~~------------ 283 (448)
T PRK04792 227 PDGRKLAYVSFEN-RKAEIFVQDIYTQVREKVTSFPGIN----------GAPRFSPDGKKLALVLSKD------------ 283 (448)
T ss_pred CCCCEEEEEEecC-CCcEEEEEECCCCCeEEecCCCCCc----------CCeeECCCCCEEEEEEeCC------------
Confidence 9999999998754 567888888 566666666543332 5789999999999986532
Q ss_pred CCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCc
Q 003363 242 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 321 (826)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~ 321 (826)
+..+||++|+++++++++ +........++|||||+. |+|++...
T Consensus 284 -----------------------------g~~~Iy~~dl~tg~~~~l--t~~~~~~~~p~wSpDG~~----I~f~s~~~- 327 (448)
T PRK04792 284 -----------------------------GQPEIYVVDIATKALTRI--TRHRAIDTEPSWHPDGKS----LIFTSERG- 327 (448)
T ss_pred -----------------------------CCeEEEEEECCCCCeEEC--ccCCCCccceEECCCCCE----EEEEECCC-
Confidence 346899999999999998 444445668999999999 99987432
Q ss_pred ceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCc
Q 003363 322 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401 (826)
Q Consensus 322 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~ 401 (826)
...+||.+|+ ++++.++|+........|.|||||++|+|.+...
T Consensus 328 -----------g~~~Iy~~dl-----------------~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~-------- 371 (448)
T PRK04792 328 -----------GKPQIYRVNL-----------------ASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTN-------- 371 (448)
T ss_pred -----------CCceEEEEEC-----------------CCCCEEEEecCCCCCcCeeECCCCCEEEEEEecC--------
Confidence 2238999998 7788888875544456799999999999987653
Q ss_pred ccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003363 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (826)
Q Consensus 402 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~ 481 (826)
+..+|+++|+.++....++... ....+.|+|||+.|+|++..++...||.++++++..+
T Consensus 372 g~~~I~~~dl~~g~~~~lt~~~---------------------~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~ 430 (448)
T PRK04792 372 GKFNIARQDLETGAMQVLTSTR---------------------LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKA 430 (448)
T ss_pred CceEEEEEECCCCCeEEccCCC---------------------CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceE
Confidence 3468999999887654443221 1125689999999999998888889999999877777
Q ss_pred EecCCCCCeeeEEEee
Q 003363 482 RITPAESNFSWSLLTL 497 (826)
Q Consensus 482 ~lt~~~~~~~~~~~s~ 497 (826)
+++...+....+.|+|
T Consensus 431 ~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 431 RLPAGQGEVKSPAWSP 446 (448)
T ss_pred ECcCCCCCcCCCccCC
Confidence 7766555444455554
|
|
| >KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-22 Score=214.76 Aligned_cols=322 Identities=19% Similarity=0.216 Sum_probs=232.1
Q ss_pred CCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC-CCceeeeeccCCCCCCCchhhhhccccccee
Q 003363 477 SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA-NKGTWSWLNVSSPISRCPEKVKSLLSSRQFS 555 (826)
Q Consensus 477 tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 555 (826)
+...+.+..+.+......-..+...+.|..+++.+|+.||-+|+..+. ..+.+ .+++.-+.- .....+.
T Consensus 371 g~~~~~fpLpv~sv~~~~g~~~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf--~e~~~~lpg--------~~~s~y~ 440 (712)
T KOG2237|consen 371 GSLLRSFPLPVGSVSGTSGDFKSSTIRFQFSSFLTPGSIYDYDLANGKPEPSVF--REITVVLPG--------FDASDYV 440 (712)
T ss_pred CceeeeecCCCCcccccccCCCCceEEEEEeccCCCCeEEEeeccCCCCCCcce--eeeccccCc--------ccccceE
Confidence 444444444444222111134567899999999999999999998664 11212 222210111 1111222
Q ss_pred eeeecccCceeeeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCC
Q 003363 556 IMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGF 635 (826)
Q Consensus 556 ~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~ 635 (826)
++.+ ...+.||..+...++..+..+..++.|++|+.||+.+......|......|..+|++....|.||.|++
T Consensus 441 ~~r~-------~~~SkDGt~VPM~Iv~kk~~k~dg~~P~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~ 513 (712)
T KOG2237|consen 441 VERI-------EVSSKDGTKVPMFIVYKKDIKLDGSKPLLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEY 513 (712)
T ss_pred EEEE-------EEecCCCCccceEEEEechhhhcCCCceEEEEecccceeeccccccceeEEEecceEEEEEeeccCccc
Confidence 2222 234456666666777766656677999999999998877667777666667789999999999999999
Q ss_pred chhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCC
Q 003363 636 GEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT 715 (826)
Q Consensus 636 G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~ 715 (826)
|..|++........+.++|+++++++|+++++..++++++.|.|.||.++..++-++||+|.|+|+..|+.|+......+
T Consensus 514 G~~WHk~G~lakKqN~f~Dfia~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~t 593 (712)
T KOG2237|consen 514 GEQWHKDGRLAKKQNSFDDFIACAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDT 593 (712)
T ss_pred ccchhhccchhhhcccHHHHHHHHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccC
Confidence 99999988887788899999999999999999999999999999999999999999999999999999999998776666
Q ss_pred CCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCC-----CcEEEEEeCCCCCCCcHHHHHHHHHHHhC--
Q 003363 716 DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK-----TPTIFLLGAQDLRVPVSNGLQYARALREK-- 788 (826)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-----~PvLii~G~~D~~vp~~~~~~~~~~l~~~-- 788 (826)
..+-|. ..++. .-.+++.+.+...+|+..+++++ +-+|+..+.+|.+|++.++.++.++|+..
T Consensus 594 ilplt~--sd~ee--------~g~p~~~~~~~~i~~y~pv~~i~~q~~YPS~lvtta~hD~RV~~~~~~K~vAklre~~~ 663 (712)
T KOG2237|consen 594 ILPLTT--SDYEE--------WGNPEDFEDLIKISPYSPVDNIKKQVQYPSMLVTTADHDDRVGPLESLKWVAKLREATC 663 (712)
T ss_pred ccccch--hhhcc--------cCChhhhhhhheecccCccCCCchhccCcceEEeeccCCCcccccchHHHHHHHHHHhh
Confidence 666664 22222 11234556666667766666553 34899999999999999999999999864
Q ss_pred -----CCCEEEEEeCCCCCCCCCCCCH-HHHHHHHHHHHHHHc
Q 003363 789 -----GVETKVIVFPNDVHGIERPQSD-FESFLNIGLWFKKYC 825 (826)
Q Consensus 789 -----g~~~~~~~~p~~~H~~~~~~~~-~~~~~~i~~w~~~~l 825 (826)
..++-+.+..++||+.-.+... .+-..-..+|+.+.+
T Consensus 664 ~~~~q~~pvll~i~~~agH~~~~~~~k~~~E~a~~yaFl~K~~ 706 (712)
T KOG2237|consen 664 DSLKQTNPVLLRIETKAGHGAEKPRFKQIEEAAFRYAFLAKML 706 (712)
T ss_pred cchhcCCCEEEEEecCCccccCCchHHHHHHHHHHHHHHHHHh
Confidence 2468888999999987544322 122234566776654
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.2e-24 Score=235.80 Aligned_cols=280 Identities=15% Similarity=0.122 Sum_probs=202.2
Q ss_pred HHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEe
Q 003363 82 LSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVP 161 (826)
Q Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~ 161 (826)
...+++.++..+.... .+|+|+.... ..++.+..||+++. .+.+.++++... ..+..|+|
T Consensus 152 ~d~i~~~~tg~~g~f~-----------~~ia~v~~~~--~~~~~~~~l~i~D~--~g~~~~~lt~~~-----~~v~~p~w 211 (433)
T PRK04922 152 ADAIYEKITGVPGAFW-----------TRIAYVTVSG--AGGAMRYALQVADS--DGYNPQTILRSA-----EPILSPAW 211 (433)
T ss_pred HHHHHHHHcCCCCccc-----------ceEEEEEEeC--CCCCceEEEEEECC--CCCCceEeecCC-----CccccccC
Confidence 3456777775554432 4566775543 22345678888775 455667777655 45789999
Q ss_pred CCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCC
Q 003363 162 SPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGS 240 (826)
Q Consensus 162 SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~ 240 (826)
||||++|+|++..+ +..+++.++ .+++.++++...... ..++|||||++|+|.....
T Consensus 212 SpDg~~la~~s~~~-~~~~l~~~dl~~g~~~~l~~~~g~~----------~~~~~SpDG~~l~~~~s~~----------- 269 (433)
T PRK04922 212 SPDGKKLAYVSFER-GRSAIYVQDLATGQRELVASFRGIN----------GAPSFSPDGRRLALTLSRD----------- 269 (433)
T ss_pred CCCCCEEEEEecCC-CCcEEEEEECCCCCEEEeccCCCCc----------cCceECCCCCEEEEEEeCC-----------
Confidence 99999999998754 567788777 556666665443322 5789999999999986432
Q ss_pred CCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecC
Q 003363 241 TKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSS 320 (826)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~ 320 (826)
+..+||++|+++++.+++ +........++|||||++ |+|++++.
T Consensus 270 ------------------------------g~~~Iy~~d~~~g~~~~l--t~~~~~~~~~~~spDG~~----l~f~sd~~ 313 (433)
T PRK04922 270 ------------------------------GNPEIYVMDLGSRQLTRL--TNHFGIDTEPTWAPDGKS----IYFTSDRG 313 (433)
T ss_pred ------------------------------CCceEEEEECCCCCeEEC--ccCCCCccceEECCCCCE----EEEEECCC
Confidence 336899999999999988 444334567899999999 99997432
Q ss_pred cceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCC
Q 003363 321 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAH 400 (826)
Q Consensus 321 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~ 400 (826)
. ..+||.+|+ .+++.++++........|.|||||++|+|.+...
T Consensus 314 g------------~~~iy~~dl-----------------~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~------- 357 (433)
T PRK04922 314 G------------RPQIYRVAA-----------------SGGSAERLTFQGNYNARASVSPDGKKIAMVHGSG------- 357 (433)
T ss_pred C------------CceEEEEEC-----------------CCCCeEEeecCCCCccCEEECCCCCEEEEEECCC-------
Confidence 1 237999998 7778888886555566899999999999987642
Q ss_pred cccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcE
Q 003363 401 SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL 480 (826)
Q Consensus 401 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~ 480 (826)
+..+|+++|+.+++.+.++.+. ....+.|+|||+.|+|.+...+...||.++++++..
T Consensus 358 -~~~~I~v~d~~~g~~~~Lt~~~---------------------~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~ 415 (433)
T PRK04922 358 -GQYRIAVMDLSTGSVRTLTPGS---------------------LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVR 415 (433)
T ss_pred -CceeEEEEECCCCCeEECCCCC---------------------CCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 3458999999887665444321 112568999999999998888888999999988888
Q ss_pred EEecCCCCCeeeEEEee
Q 003363 481 LRITPAESNFSWSLLTL 497 (826)
Q Consensus 481 ~~lt~~~~~~~~~~~s~ 497 (826)
++++...+....+.|+|
T Consensus 416 ~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 416 QRLVSADGEVREPAWSP 432 (433)
T ss_pred EEcccCCCCCCCCccCC
Confidence 88876544444444543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-24 Score=234.88 Aligned_cols=260 Identities=15% Similarity=0.175 Sum_probs=189.7
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cC
Q 003363 109 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ 187 (826)
Q Consensus 109 ~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~ 187 (826)
.+++|.... ..+..||+++. ++...++++... ..+..|+|||||++|+|++..+ +..+++..+ .+
T Consensus 164 ~~iayv~~~------~~~~~L~~~D~--dG~~~~~l~~~~-----~~v~~p~wSPDG~~la~~s~~~-~~~~I~~~dl~~ 229 (427)
T PRK02889 164 TRIAYVIKT------GNRYQLQISDA--DGQNAQSALSSP-----EPIISPAWSPDGTKLAYVSFES-KKPVVYVHDLAT 229 (427)
T ss_pred cEEEEEEcc------CCccEEEEECC--CCCCceEeccCC-----CCcccceEcCCCCEEEEEEccC-CCcEEEEEECCC
Confidence 457787532 23567888775 444556666554 4578899999999999998754 566788777 56
Q ss_pred CceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccC
Q 003363 188 SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY 267 (826)
Q Consensus 188 ~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~ 267 (826)
++..+++...... ..++|||||++|+|.....
T Consensus 230 g~~~~l~~~~g~~----------~~~~~SPDG~~la~~~~~~-------------------------------------- 261 (427)
T PRK02889 230 GRRRVVANFKGSN----------SAPAWSPDGRTLAVALSRD-------------------------------------- 261 (427)
T ss_pred CCEEEeecCCCCc----------cceEECCCCCEEEEEEccC--------------------------------------
Confidence 6666665444332 6899999999999976432
Q ss_pred CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccc
Q 003363 268 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (826)
Q Consensus 268 ~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (826)
+..+||++|+++++.+++ +........+.|||||+. |+|++++. ...+||.+++
T Consensus 262 ---g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~~wSpDG~~----l~f~s~~~------------g~~~Iy~~~~----- 315 (427)
T PRK02889 262 ---GNSQIYTVNADGSGLRRL--TQSSGIDTEPFFSPDGRS----IYFTSDRG------------GAPQIYRMPA----- 315 (427)
T ss_pred ---CCceEEEEECCCCCcEEC--CCCCCCCcCeEEcCCCCE----EEEEecCC------------CCcEEEEEEC-----
Confidence 347899999999998888 444445567899999999 99987432 1237999998
Q ss_pred hhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeee
Q 003363 348 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 427 (826)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 427 (826)
.++..++++........|.|||||++|+|.+... +..+|+++|+.+++.+.++...
T Consensus 316 ------------~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~--------g~~~I~v~d~~~g~~~~lt~~~---- 371 (427)
T PRK02889 316 ------------SGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG--------GAFKLYVQDLATGQVTALTDTT---- 371 (427)
T ss_pred ------------CCCceEEEecCCCCcCceEECCCCCEEEEEEccC--------CcEEEEEEECCCCCeEEccCCC----
Confidence 6777777775555566899999999999998753 2358999999887765544221
Q ss_pred eeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEee
Q 003363 428 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTL 497 (826)
Q Consensus 428 ~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~ 497 (826)
....+.|+|||+.|+|.+...+...|+.++++++..+++....+....+.|+|
T Consensus 372 -----------------~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 372 -----------------RDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred -----------------CccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEeecCCCCCCCCccCC
Confidence 11367899999999999988888899999997666666765445444455554
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=230.27 Aligned_cols=256 Identities=9% Similarity=-0.000 Sum_probs=186.4
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCe-EEEEecCCCCCCeEEEEe-c
Q 003363 109 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSK-LLVVRNPENESPIQFELW-S 186 (826)
Q Consensus 109 ~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~-la~~~~~~~~~~~~~~i~-~ 186 (826)
.+++|...... .+++.||+.+.+ +.+.++++... ....|.|||||++ ++|++..+ +.+++|.++ .
T Consensus 155 ~r~~~v~~~~~----~~~~~l~~~d~d--g~~~~~~~~~~------~~~~p~wSpDG~~~i~y~s~~~-~~~~Iyv~dl~ 221 (419)
T PRK04043 155 KRKVVFSKYTG----PKKSNIVLADYT--LTYQKVIVKGG------LNIFPKWANKEQTAFYYTSYGE-RKPTLYKYNLY 221 (419)
T ss_pred eeEEEEEEccC----CCcceEEEECCC--CCceeEEccCC------CeEeEEECCCCCcEEEEEEccC-CCCEEEEEECC
Confidence 34556544211 246789998864 44555566543 3678999999997 66666543 567899988 6
Q ss_pred CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCcc
Q 003363 187 QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGET 266 (826)
Q Consensus 187 ~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~ 266 (826)
+++.++++...... ..+.|||||++|+|.....
T Consensus 222 tg~~~~lt~~~g~~----------~~~~~SPDG~~la~~~~~~------------------------------------- 254 (419)
T PRK04043 222 TGKKEKIASSQGML----------VVSDVSKDGSKLLLTMAPK------------------------------------- 254 (419)
T ss_pred CCcEEEEecCCCcE----------EeeEECCCCCEEEEEEccC-------------------------------------
Confidence 77788887643333 5688999999999986532
Q ss_pred CCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEccccc
Q 003363 267 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 346 (826)
Q Consensus 267 ~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 346 (826)
++.+||++|+++++.++| +........+.|||||++ |+|++++. ...+||.+|+
T Consensus 255 ----g~~~Iy~~dl~~g~~~~L--T~~~~~d~~p~~SPDG~~----I~F~Sdr~------------g~~~Iy~~dl---- 308 (419)
T PRK04043 255 ----GQPDIYLYDTNTKTLTQI--TNYPGIDVNGNFVEDDKR----IVFVSDRL------------GYPNIFMKKL---- 308 (419)
T ss_pred ----CCcEEEEEECCCCcEEEc--ccCCCccCccEECCCCCE----EEEEECCC------------CCceEEEEEC----
Confidence 347899999999999999 444434556799999999 99998542 2248999999
Q ss_pred chhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeee
Q 003363 347 SEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 426 (826)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 426 (826)
++++.++++.... ..+.|||||++|+|.+....... ..+..+|+++|+++++.+.++...
T Consensus 309 -------------~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~--~~~~~~I~v~d~~~g~~~~LT~~~--- 368 (419)
T PRK04043 309 -------------NSGSVEQVVFHGK--NNSSVSTYKNYIVYSSRETNNEF--GKNTFNLYLISTNSDYIRRLTANG--- 368 (419)
T ss_pred -------------CCCCeEeCccCCC--cCceECCCCCEEEEEEcCCCccc--CCCCcEEEEEECCCCCeEECCCCC---
Confidence 8888888886533 24699999999999987642111 112368999999998776666431
Q ss_pred eeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC
Q 003363 427 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 488 (826)
Q Consensus 427 ~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~ 488 (826)
....+.|+|||+.|+|.+..++...|+.+++++....+|....+
T Consensus 369 ------------------~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g 412 (419)
T PRK04043 369 ------------------VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVG 412 (419)
T ss_pred ------------------CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCC
Confidence 11257899999999999888888899999998877777765444
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-23 Score=231.66 Aligned_cols=280 Identities=15% Similarity=0.169 Sum_probs=200.0
Q ss_pred HHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEe
Q 003363 82 LSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVP 161 (826)
Q Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~ 161 (826)
...+|+.++..+.... .+++|.....+.. ..+..|++.+. .+.+.++++... ..+..|+|
T Consensus 147 ~d~i~~~ltg~~g~f~-----------~~ia~v~~~~~~~--~~~~~l~~~d~--~g~~~~~l~~~~-----~~~~~p~w 206 (430)
T PRK00178 147 SDQSFEKLTGIKGAFS-----------TRILYVTAERFSV--NTRYTLQRSDY--DGARAVTLLQSR-----EPILSPRW 206 (430)
T ss_pred HHHHHHHHhCCCccce-----------eeEEEEEeeCCCC--CcceEEEEECC--CCCCceEEecCC-----CceeeeeE
Confidence 3457777765554322 4577876544321 23456777665 344566666554 34789999
Q ss_pred CCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCC
Q 003363 162 SPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGS 240 (826)
Q Consensus 162 SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~ 240 (826)
||||++|+|++..+ +..+++.++ .+++.++++...... ..++|||||++|+|.....
T Consensus 207 SpDG~~la~~s~~~-~~~~l~~~~l~~g~~~~l~~~~g~~----------~~~~~SpDG~~la~~~~~~----------- 264 (430)
T PRK00178 207 SPDGKRIAYVSFEQ-KRPRIFVQNLDTGRREQITNFEGLN----------GAPAWSPDGSKLAFVLSKD----------- 264 (430)
T ss_pred CCCCCEEEEEEcCC-CCCEEEEEECCCCCEEEccCCCCCc----------CCeEECCCCCEEEEEEccC-----------
Confidence 99999999998764 566788877 556666665443222 5799999999999976432
Q ss_pred CCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecC
Q 003363 241 TKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSS 320 (826)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~ 320 (826)
+..+||++|+++++.+++ +........+.|||||+. |+|.+.+.
T Consensus 265 ------------------------------g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~~~spDg~~----i~f~s~~~ 308 (430)
T PRK00178 265 ------------------------------GNPEIYVMDLASRQLSRV--TNHPAIDTEPFWGKDGRT----LYFTSDRG 308 (430)
T ss_pred ------------------------------CCceEEEEECCCCCeEEc--ccCCCCcCCeEECCCCCE----EEEEECCC
Confidence 236899999999999988 444445667899999999 99987432
Q ss_pred cceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCC
Q 003363 321 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAH 400 (826)
Q Consensus 321 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~ 400 (826)
...+||.+++ .+++.++++........|.|||||++|+|.+...
T Consensus 309 ------------g~~~iy~~d~-----------------~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~------- 352 (430)
T PRK00178 309 ------------GKPQIYKVNV-----------------NGGRAERVTFVGNYNARPRLSADGKTLVMVHRQD------- 352 (430)
T ss_pred ------------CCceEEEEEC-----------------CCCCEEEeecCCCCccceEECCCCCEEEEEEccC-------
Confidence 2237999998 7778888876555567899999999999998653
Q ss_pred cccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcE
Q 003363 401 SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL 480 (826)
Q Consensus 401 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~ 480 (826)
+..+|+++|+.+++.+.++... ....+.|+|||+.|+|++...+...|+.++++++..
T Consensus 353 -~~~~l~~~dl~tg~~~~lt~~~---------------------~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 353 -GNFHVAAQDLQRGSVRILTDTS---------------------LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred -CceEEEEEECCCCCEEEccCCC---------------------CCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 2457999999987765554321 112568999999999998888888999999987777
Q ss_pred EEecCCCCCeeeEEEee
Q 003363 481 LRITPAESNFSWSLLTL 497 (826)
Q Consensus 481 ~~lt~~~~~~~~~~~s~ 497 (826)
+++....+....+.|++
T Consensus 411 ~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 411 LPLPTAQGEVREPSWSP 427 (430)
T ss_pred EECcCCCCCcCCCccCC
Confidence 67765444444444543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-22 Score=222.42 Aligned_cols=245 Identities=13% Similarity=0.118 Sum_probs=185.2
Q ss_pred CCCeEEEEecCCCC---CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCC
Q 003363 164 SGSKLLVVRNPENE---SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 239 (826)
Q Consensus 164 dG~~la~~~~~~~~---~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~ 239 (826)
-..+|||+++..+. ..+++.++ ++...++++...... ..++|||||++|+|++...
T Consensus 164 f~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~v----------~~p~wSpDG~~lay~s~~~---------- 223 (435)
T PRK05137 164 FDTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSLV----------LTPRFSPNRQEITYMSYAN---------- 223 (435)
T ss_pred CCCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCCe----------EeeEECCCCCEEEEEEecC----------
Confidence 35689999875432 45677666 455666666543333 7899999999999987543
Q ss_pred CCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeec
Q 003363 240 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 319 (826)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~ 319 (826)
+..+||++|+.+|+.++++ ........+.|||||+. |+|+...
T Consensus 224 -------------------------------g~~~i~~~dl~~g~~~~l~--~~~g~~~~~~~SPDG~~----la~~~~~ 266 (435)
T PRK05137 224 -------------------------------GRPRVYLLDLETGQRELVG--NFPGMTFAPRFSPDGRK----VVMSLSQ 266 (435)
T ss_pred -------------------------------CCCEEEEEECCCCcEEEee--cCCCcccCcEECCCCCE----EEEEEec
Confidence 3478999999999988883 33334567899999999 9998632
Q ss_pred CcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCC
Q 003363 320 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 399 (826)
Q Consensus 320 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~ 399 (826)
+...+||.+|+ ++++.++|+.+.+....|.|||||++|+|.+.+.
T Consensus 267 ------------~g~~~Iy~~d~-----------------~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~------ 311 (435)
T PRK05137 267 ------------GGNTDIYTMDL-----------------RSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRS------ 311 (435)
T ss_pred ------------CCCceEEEEEC-----------------CCCceEEccCCCCccCceeEcCCCCEEEEEECCC------
Confidence 23358999998 7888999998877778899999999999998764
Q ss_pred CcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc
Q 003363 400 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 479 (826)
Q Consensus 400 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~ 479 (826)
+..+||++|+.++..++++... .....+.|||||+.|++.....+...|+.+|++++.
T Consensus 312 --g~~~Iy~~d~~g~~~~~lt~~~--------------------~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 312 --GSPQLYVMNADGSNPRRISFGG--------------------GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred --CCCeEEEEECCCCCeEEeecCC--------------------CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 3468999998876655443211 012357899999999998876677899999998888
Q ss_pred EEEecCCCCCeeeEEEeecCCEEEEEEeCCCCC--CeEEEEeeccc
Q 003363 480 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDV--PQVKYGYFVDK 523 (826)
Q Consensus 480 ~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p--~~l~~~~~~~~ 523 (826)
.+.++... ......|++||+.|++........ ..|+++++.++
T Consensus 370 ~~~lt~~~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 370 ERILTSGF-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred eEeccCCC-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 88777653 345578999999999988766553 57999987654
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-21 Score=215.91 Aligned_cols=272 Identities=14% Similarity=0.152 Sum_probs=188.9
Q ss_pred HHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEe
Q 003363 82 LSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVP 161 (826)
Q Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~ 161 (826)
...+++.++..+.... ++|+|+....+ +.+...||+++.+ +...+.++... ..+..|+|
T Consensus 153 ~d~i~~~ltg~~g~f~-----------~ria~v~~~~~---~~~~~~i~i~d~d--g~~~~~lt~~~-----~~v~~p~w 211 (429)
T PRK01742 153 SDEVFEKLTAIRGAFR-----------TRIAYVVQKNG---GSQPYEVRVADYD--GFNQFIVNRSS-----QPLMSPAW 211 (429)
T ss_pred HHHHHHHHcCCCCccC-----------CEEEEEEEEcC---CCceEEEEEECCC--CCCceEeccCC-----CccccceE
Confidence 3457777776665544 56678766543 2345788888764 33455566544 34789999
Q ss_pred CCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCC
Q 003363 162 SPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGS 240 (826)
Q Consensus 162 SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~ 240 (826)
||||++|||++..+ +..+++..+ .+++.+++....... ..++|||||++|+|.+...
T Consensus 212 SPDG~~la~~s~~~-~~~~i~i~dl~tg~~~~l~~~~g~~----------~~~~wSPDG~~La~~~~~~----------- 269 (429)
T PRK01742 212 SPDGSKLAYVSFEN-KKSQLVVHDLRSGARKVVASFRGHN----------GAPAFSPDGSRLAFASSKD----------- 269 (429)
T ss_pred cCCCCEEEEEEecC-CCcEEEEEeCCCCceEEEecCCCcc----------CceeECCCCCEEEEEEecC-----------
Confidence 99999999998654 456677666 455555555443322 5789999999999976432
Q ss_pred CCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecC
Q 003363 241 TKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSS 320 (826)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~ 320 (826)
+..+||++|+++++.+++ +........+.|||||+. |+|++.+.
T Consensus 270 ------------------------------g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~~wSpDG~~----i~f~s~~~ 313 (429)
T PRK01742 270 ------------------------------GVLNIYVMGANGGTPSQL--TSGAGNNTEPSWSPDGQS----ILFTSDRS 313 (429)
T ss_pred ------------------------------CcEEEEEEECCCCCeEee--ccCCCCcCCEEECCCCCE----EEEEECCC
Confidence 235799999999999998 445556778999999999 99987432
Q ss_pred cceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCC
Q 003363 321 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAH 400 (826)
Q Consensus 321 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~ 400 (826)
...+||.++. .++..+.++. .+ ..+.|||||++|+|.+.
T Consensus 314 ------------g~~~I~~~~~-----------------~~~~~~~l~~-~~--~~~~~SpDG~~ia~~~~--------- 352 (429)
T PRK01742 314 ------------GSPQVYRMSA-----------------SGGGASLVGG-RG--YSAQISADGKTLVMING--------- 352 (429)
T ss_pred ------------CCceEEEEEC-----------------CCCCeEEecC-CC--CCccCCCCCCEEEEEcC---------
Confidence 2237999987 5565666642 22 46899999999998764
Q ss_pred cccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcE
Q 003363 401 SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL 480 (826)
Q Consensus 401 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~ 480 (826)
..++++|+.++....++... ....+.|+|||+.|++++..++...++.++.+++..
T Consensus 353 ---~~i~~~Dl~~g~~~~lt~~~---------------------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~ 408 (429)
T PRK01742 353 ---DNVVKQDLTSGSTEVLSSTF---------------------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFK 408 (429)
T ss_pred ---CCEEEEECCCCCeEEecCCC---------------------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCce
Confidence 23788998886644332211 113578999999999888766666777888877778
Q ss_pred EEecCCCCCeeeEEEee
Q 003363 481 LRITPAESNFSWSLLTL 497 (826)
Q Consensus 481 ~~lt~~~~~~~~~~~s~ 497 (826)
++|+...+....+.|+|
T Consensus 409 ~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 409 ARLPGSDGQVKFPAWSP 425 (429)
T ss_pred EEccCCCCCCCCcccCC
Confidence 88875555444455665
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.2e-22 Score=217.16 Aligned_cols=248 Identities=15% Similarity=0.152 Sum_probs=178.9
Q ss_pred CCeEEEEecCCC-----CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCe--EEEEeecCCCCCCCc
Q 003363 165 GSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL--IAYVAEEPSPSKPTF 236 (826)
Q Consensus 165 G~~la~~~~~~~-----~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~--ia~~~~~~~~~~~~~ 236 (826)
|++|||+....+ ....+|+++ ++++.++++...... ..|+|||||++ ++|++.+.
T Consensus 146 ~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~~----------~sP~wSPDG~~~~~~y~S~~~------- 208 (428)
T PRK01029 146 SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSLS----------ITPTWMHIGSGFPYLYVSYKL------- 208 (428)
T ss_pred cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCCc----------ccceEccCCCceEEEEEEccC-------
Confidence 899999986532 145788888 667778887643333 68999999998 55576543
Q ss_pred cCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEE
Q 003363 237 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFV 316 (826)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~ 316 (826)
+.++||++++++|+.++++ ........+.|||||++ |+|+
T Consensus 209 ----------------------------------g~~~I~~~~l~~g~~~~lt--~~~g~~~~p~wSPDG~~----Laf~ 248 (428)
T PRK01029 209 ----------------------------------GVPKIFLGSLENPAGKKIL--ALQGNQLMPTFSPRKKL----LAFI 248 (428)
T ss_pred ----------------------------------CCceEEEEECCCCCceEee--cCCCCccceEECCCCCE----EEEE
Confidence 3479999999999999883 43344567999999999 9998
Q ss_pred eecCcceeeeeeeeccCCCceEEE--EcccccchhhhhhhhcCCCCCCcceecCCCC-ccccCceecCCCCEEEEEeccC
Q 003363 317 GWSSETRKLGIKYCYNRPCALYAV--RVSLYKSEASELELKESSSEDLPVVNLTESI-SSAFFPRFSPDGKFLVFLSAKS 393 (826)
Q Consensus 317 ~~~~~~~~~g~~~~~~~~~~l~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~-~~~~~p~~SpDG~~l~f~s~~~ 393 (826)
+...+ ..++|.. +++.+ .++..++|+... .....|.|||||++|+|.+.+.
T Consensus 249 s~~~g------------~~di~~~~~~~~~g--------------~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~ 302 (428)
T PRK01029 249 SDRYG------------NPDLFIQSFSLETG--------------AIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKD 302 (428)
T ss_pred ECCCC------------CcceeEEEeecccC--------------CCCcceEeecCCCCCcCCeEECCCCCEEEEEECCC
Confidence 84321 2256664 44110 235677888653 4457899999999999998764
Q ss_pred CCCCCCCcccceEEEEeCCCCC--CCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003363 394 SVDSGAHSATDSLHRIDWPTNG--NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (826)
Q Consensus 394 ~~~~g~~~~~~~l~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (826)
+..+||++++++++ .+.++... .....+.|||||+.|+|.....+..+|+
T Consensus 303 --------g~~~ly~~~~~~~g~~~~~lt~~~--------------------~~~~~p~wSPDG~~Laf~~~~~g~~~I~ 354 (428)
T PRK01029 303 --------GRPRIYIMQIDPEGQSPRLLTKKY--------------------RNSSCPAWSPDGKKIAFCSVIKGVRQIC 354 (428)
T ss_pred --------CCceEEEEECcccccceEEeccCC--------------------CCccceeECCCCCEEEEEEcCCCCcEEE
Confidence 34579999886432 22222111 0224678999999999988777778999
Q ss_pred EEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 003363 472 SVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 524 (826)
Q Consensus 472 ~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~ 524 (826)
.+|+++|+.++|+..........|++||+.|++..... ....||+.++.+++
T Consensus 355 v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~-g~~~L~~vdl~~g~ 406 (428)
T PRK01029 355 VYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNS-NESELYLISLITKK 406 (428)
T ss_pred EEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCC-CCceEEEEECCCCC
Confidence 99999999999987655456678999999999887653 34679988876543
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=214.55 Aligned_cols=239 Identities=11% Similarity=0.044 Sum_probs=178.0
Q ss_pred CeEEEEec-CCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCe-EEEEeecCCCCCCCccCCCCC
Q 003363 166 SKLLVVRN-PENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL-IAYVAEEPSPSKPTFSLGSTK 242 (826)
Q Consensus 166 ~~la~~~~-~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~-ia~~~~~~~~~~~~~~~~~~~ 242 (826)
.++||+.. ......+++..+ ++...+.++.. ... ..+.|||||++ ++|.+.+.
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~-~~~----------~~p~wSpDG~~~i~y~s~~~------------- 210 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKG-GLN----------IFPKWANKEQTAFYYTSYGE------------- 210 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCCCceeEEccC-CCe----------EeEEECCCCCcEEEEEEccC-------------
Confidence 46667665 332356788877 44455545543 222 68999999997 66665432
Q ss_pred CCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcc
Q 003363 243 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 322 (826)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~ 322 (826)
+.++||++|+.+|+.+++ +........+.|||||++ |+|+....
T Consensus 211 ----------------------------~~~~Iyv~dl~tg~~~~l--t~~~g~~~~~~~SPDG~~----la~~~~~~-- 254 (419)
T PRK04043 211 ----------------------------RKPTLYKYNLYTGKKEKI--ASSQGMLVVSDVSKDGSK----LLLTMAPK-- 254 (419)
T ss_pred ----------------------------CCCEEEEEECCCCcEEEE--ecCCCcEEeeEECCCCCE----EEEEEccC--
Confidence 347999999999999999 443334556889999999 99987421
Q ss_pred eeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcc
Q 003363 323 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 402 (826)
Q Consensus 323 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~ 402 (826)
...+||.+|+ ++++.++||...+....|.|||||++|+|.+.+. +
T Consensus 255 ----------g~~~Iy~~dl-----------------~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~--------g 299 (419)
T PRK04043 255 ----------GQPDIYLYDT-----------------NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRL--------G 299 (419)
T ss_pred ----------CCcEEEEEEC-----------------CCCcEEEcccCCCccCccEECCCCCEEEEEECCC--------C
Confidence 2358999998 7888999998876677899999999999999874 3
Q ss_pred cceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC------CeEEEEEEECC
Q 003363 403 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG------SSQVIISVNVS 476 (826)
Q Consensus 403 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~------~~~~l~~vdl~ 476 (826)
..+||++|+++++.++++... .....|||||+.|++..... +..+||.+|++
T Consensus 300 ~~~Iy~~dl~~g~~~rlt~~g----------------------~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 300 YPNIFMKKLNSGSVEQVVFHG----------------------KNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTN 357 (419)
T ss_pred CceEEEEECCCCCeEeCccCC----------------------CcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence 468999999987765554211 01347999999999988654 33689999999
Q ss_pred CCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 477 SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 477 tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
+|+.++|+.... ...+.|+|||+.|+|.... ..-..|+..++.+.
T Consensus 358 ~g~~~~LT~~~~-~~~p~~SPDG~~I~f~~~~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 358 SDYIRRLTANGV-NQFPRFSSDGGSIMFIKYL-GNQSALGIIRLNYN 402 (419)
T ss_pred CCCeEECCCCCC-cCCeEECCCCCEEEEEEcc-CCcEEEEEEecCCC
Confidence 999999998643 3357899999999998765 44456888887654
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-22 Score=215.51 Aligned_cols=331 Identities=16% Similarity=0.166 Sum_probs=217.1
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003363 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (826)
Q Consensus 105 s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (826)
||||+.+.+..+....-..+....++++++.+ ++.++++... .....+.|||||++|||+++.+ +|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~--~~~~~l~~~~-----~~~~~~~~sP~g~~~~~v~~~n-----ly~~ 68 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIET--GEITPLTPPP-----PKLQDAKWSPDGKYIAFVRDNN-----LYLR 68 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTT--TEEEESS-EE-----TTBSEEEE-SSSTEEEEEETTE-----EEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCC--CceEECcCCc-----cccccceeecCCCeeEEEecCc-----eEEE
Confidence 79999999988776666666778889988744 3455554432 4588999999999999998875 7777
Q ss_pred e-cCCceeEEEecC-----CCccccccCCC---cccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCC
Q 003363 185 W-SQSQLEKEFHVP-----QTVHGSVYADG---WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 255 (826)
Q Consensus 185 ~-~~~~~~~~~~~~-----~~~~g~v~~~~---~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (826)
. .++..+++|... .+..++||.+| ....+.|||||++|||...+...........+.......+...
T Consensus 69 ~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~---- 144 (353)
T PF00930_consen 69 DLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVE---- 144 (353)
T ss_dssp SSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEE----
T ss_pred ECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCccc----
Confidence 6 466777777532 23445566655 3468899999999999987765433211111111100000000
Q ss_pred cceeecCCCccCCCccCceEEEEEccCCceEeccC----CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeec
Q 003363 256 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG----IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCY 331 (826)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~----~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~ 331 (826)
...| |.-|... ....|+++|+++++...+.. .+.+.....+.|++|++. |++.--....
T Consensus 145 ~~~Y-Pk~G~~n---p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~----l~~~~~nR~q--------- 207 (353)
T PF00930_consen 145 SIRY-PKAGDPN---PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKR----LWVQWLNRDQ--------- 207 (353)
T ss_dssp EEE---BTTS------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEE----EEEEEEETTS---------
T ss_pred cccc-CCCCCcC---CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcE----EEEEEcccCC---------
Confidence 0111 1112211 34679999999998766531 123456778999999996 6665422111
Q ss_pred cCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCC----CCc-cccCceec-CCCCEEEEEeccCCCCCCCCcccce
Q 003363 332 NRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE----SIS-SAFFPRFS-PDGKFLVFLSAKSSVDSGAHSATDS 405 (826)
Q Consensus 332 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~----~~~-~~~~p~~S-pDG~~l~f~s~~~~~~~g~~~~~~~ 405 (826)
....|+.+|+ .++..+.+.. ... ....+.|. +||..++|.+.++ +..+
T Consensus 208 -~~~~l~~~d~-----------------~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~--------G~~h 261 (353)
T PF00930_consen 208 -NRLDLVLCDA-----------------STGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD--------GYRH 261 (353)
T ss_dssp -TEEEEEEEEE-----------------CTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT--------SSEE
T ss_pred -CEEEEEEEEC-----------------CCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC--------CCcE
Confidence 2236778887 5555443321 111 12345555 9999999999964 4689
Q ss_pred EEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC--CeEEEEEEECC-CCcEEE
Q 003363 406 LHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG--SSQVIISVNVS-SGELLR 482 (826)
Q Consensus 406 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~--~~~~l~~vdl~-tg~~~~ 482 (826)
|++++..++..+.+|.+..++.. -+.|+++++.|||.+... ...+||+++++ +|+.++
T Consensus 262 ly~~~~~~~~~~~lT~G~~~V~~-------------------i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~ 322 (353)
T PF00930_consen 262 LYLYDLDGGKPRQLTSGDWEVTS-------------------ILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKC 322 (353)
T ss_dssp EEEEETTSSEEEESS-SSS-EEE-------------------EEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEE
T ss_pred EEEEcccccceeccccCceeecc-------------------cceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEe
Confidence 99999999888888887766544 236888999999998863 57899999999 999999
Q ss_pred ecCCCCCeeeEEEeecCCEEEEEEeCCCCCC
Q 003363 483 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVP 513 (826)
Q Consensus 483 lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~ 513 (826)
||...+......||++++.++..+++++.|+
T Consensus 323 LT~~~~~~~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 323 LTCEDGDHYSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp SSTTSSTTEEEEE-TTSSEEEEEEESSSSCE
T ss_pred ccCCCCCceEEEECCCCCEEEEEEcCCCCCC
Confidence 9998886656799999999999999999985
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.6e-21 Score=212.61 Aligned_cols=242 Identities=17% Similarity=0.160 Sum_probs=179.4
Q ss_pred CeEEEEecCCCC--CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCC
Q 003363 166 SKLLVVRNPENE--SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK 242 (826)
Q Consensus 166 ~~la~~~~~~~~--~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~ 242 (826)
++|||+....++ ..+++.++ ++.+.++++...... ..++|||||++|||++...
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~~----------~~p~wSPDG~~la~~s~~~------------- 220 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPL----------MSPAWSPDGSKLAYVTFES------------- 220 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCCCce----------eeeEEcCCCCEEEEEEecC-------------
Confidence 789999865322 34566666 455666666543333 6899999999999986432
Q ss_pred CCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcc
Q 003363 243 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 322 (826)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~ 322 (826)
+..+||++|+.+|+.+.++ ........+.|||||+. |+|+....
T Consensus 221 ----------------------------g~~~i~i~dl~~G~~~~l~--~~~~~~~~~~~SPDG~~----La~~~~~~-- 264 (429)
T PRK03629 221 ----------------------------GRSALVIQTLANGAVRQVA--SFPRHNGAPAFSPDGSK----LAFALSKT-- 264 (429)
T ss_pred ----------------------------CCcEEEEEECCCCCeEEcc--CCCCCcCCeEECCCCCE----EEEEEcCC--
Confidence 3478999999999988883 33334567999999999 99986321
Q ss_pred eeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcc
Q 003363 323 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 402 (826)
Q Consensus 323 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~ 402 (826)
...+||++|+ ++++.++++.+......|.|||||++|+|.+.+. +
T Consensus 265 ----------g~~~I~~~d~-----------------~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~--------g 309 (429)
T PRK03629 265 ----------GSLNLYVMDL-----------------ASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQA--------G 309 (429)
T ss_pred ----------CCcEEEEEEC-----------------CCCCEEEccCCCCCcCceEECCCCCEEEEEeCCC--------C
Confidence 2237999998 7888899998877788999999999999999764 2
Q ss_pred cceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEE
Q 003363 403 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 482 (826)
Q Consensus 403 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~ 482 (826)
..+||++|+.++..++++... .....+.|+|||+.|++.....+...|+.+|+++++.+.
T Consensus 310 ~~~Iy~~d~~~g~~~~lt~~~--------------------~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~ 369 (429)
T PRK03629 310 RPQVYKVNINGGAPQRITWEG--------------------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV 369 (429)
T ss_pred CceEEEEECCCCCeEEeecCC--------------------CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE
Confidence 468999999886554332110 012357899999999998877777899999999999999
Q ss_pred ecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 483 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 483 lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
|+.... ...+.|++||+.|++...... ...+++.++.+.
T Consensus 370 Lt~~~~-~~~p~~SpDG~~i~~~s~~~~-~~~l~~~~~~G~ 408 (429)
T PRK03629 370 LTDTFL-DETPSIAPNGTMVIYSSSQGM-GSVLNLVSTDGR 408 (429)
T ss_pred eCCCCC-CCCceECCCCCEEEEEEcCCC-ceEEEEEECCCC
Confidence 986532 235689999999998887543 345777776543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.2e-21 Score=211.91 Aligned_cols=240 Identities=17% Similarity=0.181 Sum_probs=178.0
Q ss_pred CeEEEEecCCCCCCeEEEEec-CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCC
Q 003363 166 SKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG 244 (826)
Q Consensus 166 ~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~ 244 (826)
.+|||+.... +..+++..+. +...++++...... ..++|||||++|||.+...
T Consensus 164 ~~iayv~~~~-~~~~L~~~D~dG~~~~~l~~~~~~v----------~~p~wSPDG~~la~~s~~~--------------- 217 (427)
T PRK02889 164 TRIAYVIKTG-NRYQLQISDADGQNAQSALSSPEPI----------ISPAWSPDGTKLAYVSFES--------------- 217 (427)
T ss_pred cEEEEEEccC-CccEEEEECCCCCCceEeccCCCCc----------ccceEcCCCCEEEEEEccC---------------
Confidence 5799998543 4556776664 44455655433333 7899999999999987542
Q ss_pred CCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCccee
Q 003363 245 SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK 324 (826)
Q Consensus 245 ~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~ 324 (826)
+.++||++|+.+|+.+++. ........+.|||||+. |+|....
T Consensus 218 --------------------------~~~~I~~~dl~~g~~~~l~--~~~g~~~~~~~SPDG~~----la~~~~~----- 260 (427)
T PRK02889 218 --------------------------KKPVVYVHDLATGRRRVVA--NFKGSNSAPAWSPDGRT----LAVALSR----- 260 (427)
T ss_pred --------------------------CCcEEEEEECCCCCEEEee--cCCCCccceEECCCCCE----EEEEEcc-----
Confidence 3478999999999988883 33334567899999999 9997632
Q ss_pred eeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccc
Q 003363 325 LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 404 (826)
Q Consensus 325 ~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~ 404 (826)
+...+||.+|+ .++..++|+.+.+....|.|||||++|+|.+.+. +..
T Consensus 261 -------~g~~~Iy~~d~-----------------~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~--------g~~ 308 (427)
T PRK02889 261 -------DGNSQIYTVNA-----------------DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRG--------GAP 308 (427)
T ss_pred -------CCCceEEEEEC-----------------CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCC--------CCc
Confidence 23358999998 7778889988776678899999999999988763 346
Q ss_pred eEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003363 405 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (826)
Q Consensus 405 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt 484 (826)
+||.+++.++..++++... . ....+.|||||+.|++.+...+...|+.+|+.+++.++++
T Consensus 309 ~Iy~~~~~~g~~~~lt~~g-----------------~---~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 309 QIYRMPASGGAAQRVTFTG-----------------S---YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT 368 (427)
T ss_pred EEEEEECCCCceEEEecCC-----------------C---CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc
Confidence 8999998775543332110 0 1125689999999999887777789999999999999998
Q ss_pred CCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003363 485 PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (826)
Q Consensus 485 ~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 522 (826)
.... ...+.|++||+.|++....... ..+++.++.+
T Consensus 369 ~~~~-~~~p~~spdg~~l~~~~~~~g~-~~l~~~~~~g 404 (427)
T PRK02889 369 DTTR-DESPSFAPNGRYILYATQQGGR-SVLAAVSSDG 404 (427)
T ss_pred CCCC-ccCceECCCCCEEEEEEecCCC-EEEEEEECCC
Confidence 6543 3456899999999998876554 5688877643
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=208.91 Aligned_cols=241 Identities=16% Similarity=0.180 Sum_probs=177.2
Q ss_pred CeEEEEecCCCC--CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCC
Q 003363 166 SKLLVVRNPENE--SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK 242 (826)
Q Consensus 166 ~~la~~~~~~~~--~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~ 242 (826)
.++||+....+. ..+++.++ ++.+.+.++...... ..+.|||||++|+|++.+.
T Consensus 183 ~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~----------~~p~wSPDG~~La~~s~~~------------- 239 (448)
T PRK04792 183 TRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPEPL----------MSPAWSPDGRKLAYVSFEN------------- 239 (448)
T ss_pred CEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCCcc----------cCceECCCCCEEEEEEecC-------------
Confidence 578888765422 23555555 444556666544333 6899999999999987543
Q ss_pred CCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcc
Q 003363 243 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 322 (826)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~ 322 (826)
+..+||++|+.+|+.+.++ ........+.|||||+. |+|+....
T Consensus 240 ----------------------------g~~~L~~~dl~tg~~~~lt--~~~g~~~~~~wSPDG~~----La~~~~~~-- 283 (448)
T PRK04792 240 ----------------------------RKAEIFVQDIYTQVREKVT--SFPGINGAPRFSPDGKK----LALVLSKD-- 283 (448)
T ss_pred ----------------------------CCcEEEEEECCCCCeEEec--CCCCCcCCeeECCCCCE----EEEEEeCC--
Confidence 3478999999999988883 32333457899999999 99986332
Q ss_pred eeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcc
Q 003363 323 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 402 (826)
Q Consensus 323 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~ 402 (826)
...+||++|+ ++++.++|+.+......|.|||||++|+|.+.+. +
T Consensus 284 ----------g~~~Iy~~dl-----------------~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~--------g 328 (448)
T PRK04792 284 ----------GQPEIYVVDI-----------------ATKALTRITRHRAIDTEPSWHPDGKSLIFTSERG--------G 328 (448)
T ss_pred ----------CCeEEEEEEC-----------------CCCCeEECccCCCCccceEECCCCCEEEEEECCC--------C
Confidence 2347999998 7888899998766778899999999999998764 3
Q ss_pred cceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEE
Q 003363 403 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 482 (826)
Q Consensus 403 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~ 482 (826)
..+||++|+.+++.+.++... .+ ...+.|+|||+.|+|.....+..+||.+|+++++.+.
T Consensus 329 ~~~Iy~~dl~~g~~~~Lt~~g-----------------~~---~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~ 388 (448)
T PRK04792 329 KPQIYRVNLASGKVSRLTFEG-----------------EQ---NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV 388 (448)
T ss_pred CceEEEEECCCCCEEEEecCC-----------------CC---CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE
Confidence 468999999886654443110 01 1246899999999998877777899999999999998
Q ss_pred ecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003363 483 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (826)
Q Consensus 483 lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 522 (826)
|+....+ ..+.|++||+.|++...... -..|++.+..+
T Consensus 389 lt~~~~d-~~ps~spdG~~I~~~~~~~g-~~~l~~~~~~G 426 (448)
T PRK04792 389 LTSTRLD-ESPSVAPNGTMVIYSTTYQG-KQVLAAVSIDG 426 (448)
T ss_pred ccCCCCC-CCceECCCCCEEEEEEecCC-ceEEEEEECCC
Confidence 8865332 23579999999988876543 35688877643
|
|
| >PRK10566 esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.9e-21 Score=197.48 Aligned_cols=231 Identities=16% Similarity=0.158 Sum_probs=152.4
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCC-chhhhhcCCCCC--CcchH
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGF-GEEALQSLPGKV--GSQDV 652 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~-G~~~~~~~~~~~--~~~~~ 652 (826)
+..+.|.|.+ ..+++.|+||++||.+.. ...+...++.|+++||.|+++|+||.+.. +..........+ .....
T Consensus 12 ~~~~~~~p~~-~~~~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~~~ 88 (249)
T PRK10566 12 IEVLHAFPAG-QRDTPLPTVFFYHGFTSS--KLVYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQNM 88 (249)
T ss_pred cceEEEcCCC-CCCCCCCEEEEeCCCCcc--cchHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHHHH
Confidence 3345667763 134568999999997654 34577788899999999999999995431 110000000000 11246
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEec-CCccchhhhccCCCCCCchhhhhccCcCC
Q 003363 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR-NPLCNLALMVGTTDIPDWCYVESYGSKGK 731 (826)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (826)
+|+.++++++.+++.+|.++|+++|||+||++++.++.++|+...++++. ++... ........+.. .. ..
T Consensus 89 ~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------~~-~~ 159 (249)
T PRK10566 89 QEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVKCVASLMGSGYFT--SLARTLFPPLI------PE-TA 159 (249)
T ss_pred HHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCeeEEEEeeCcHHHH--HHHHHhccccc------cc-cc
Confidence 78888899998887789999999999999999999999888754443332 22211 10000000000 00 00
Q ss_pred ccCCCCCChhhHHHHhhcCcccccCCC-CCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCC--EEEEEeCCCCCCCCCCC
Q 003363 732 DSFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALREKGVE--TKVIVFPNDVHGIERPQ 808 (826)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~--~~~~~~p~~~H~~~~~~ 808 (826)
... ....+....+...++...+.++ ++|+|++||++|..+|+.++++++++++.+|.+ ++++++++++|.+.
T Consensus 160 ~~~--~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~~--- 234 (249)
T PRK10566 160 AQQ--AEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRIT--- 234 (249)
T ss_pred ccH--HHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCccC---
Confidence 000 0000111222334455556666 699999999999999999999999999998864 78999999999875
Q ss_pred CHHHHHHHHHHHHHHHc
Q 003363 809 SDFESFLNIGLWFKKYC 825 (826)
Q Consensus 809 ~~~~~~~~i~~w~~~~l 825 (826)
.+.+..+.+||+++|
T Consensus 235 --~~~~~~~~~fl~~~~ 249 (249)
T PRK10566 235 --PEALDAGVAFFRQHL 249 (249)
T ss_pred --HHHHHHHHHHHHhhC
Confidence 357899999999886
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-20 Score=207.84 Aligned_cols=242 Identities=14% Similarity=0.143 Sum_probs=177.5
Q ss_pred CCeEEEEecCCCC---CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCC
Q 003363 165 GSKLLVVRNPENE---SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGS 240 (826)
Q Consensus 165 G~~la~~~~~~~~---~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~ 240 (826)
+.+|||++...++ ..+++.++ ++...++++...... ..++|||||++|+|++...
T Consensus 167 ~~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~~~~v----------~~p~wSpDg~~la~~s~~~----------- 225 (433)
T PRK04922 167 WTRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRSAEPI----------LSPAWSPDGKKLAYVSFER----------- 225 (433)
T ss_pred cceEEEEEEeCCCCCceEEEEEECCCCCCceEeecCCCcc----------ccccCCCCCCEEEEEecCC-----------
Confidence 5678998764322 22444444 344566666543333 6899999999999986532
Q ss_pred CCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecC
Q 003363 241 TKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSS 320 (826)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~ 320 (826)
+..+||++|+.+|+.+.+. ........+.|||||+. |+|.....
T Consensus 226 ------------------------------~~~~l~~~dl~~g~~~~l~--~~~g~~~~~~~SpDG~~----l~~~~s~~ 269 (433)
T PRK04922 226 ------------------------------GRSAIYVQDLATGQRELVA--SFRGINGAPSFSPDGRR----LALTLSRD 269 (433)
T ss_pred ------------------------------CCcEEEEEECCCCCEEEec--cCCCCccCceECCCCCE----EEEEEeCC
Confidence 3478999999999988884 22334457899999999 99986322
Q ss_pred cceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCC
Q 003363 321 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAH 400 (826)
Q Consensus 321 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~ 400 (826)
...+||++|+ .+++.++++.+......|.|||||++|+|.+.+.
T Consensus 270 ------------g~~~Iy~~d~-----------------~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~------- 313 (433)
T PRK04922 270 ------------GNPEIYVMDL-----------------GSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRG------- 313 (433)
T ss_pred ------------CCceEEEEEC-----------------CCCCeEECccCCCCccceEECCCCCEEEEEECCC-------
Confidence 2348999998 7888899988766677899999999999998764
Q ss_pred cccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcE
Q 003363 401 SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL 480 (826)
Q Consensus 401 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~ 480 (826)
+..+||++|+.+++.++++... .+ ...+.|||||+.|++.+...+...|+.+|+.+++.
T Consensus 314 -g~~~iy~~dl~~g~~~~lt~~g-----------------~~---~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 314 -GRPQIYRVAASGGSAERLTFQG-----------------NY---NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred -CCceEEEEECCCCCeEEeecCC-----------------CC---ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence 2368999999886654443211 01 12578999999999987766677999999999999
Q ss_pred EEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003363 481 LRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (826)
Q Consensus 481 ~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 522 (826)
+.|+.... .....|++||+.+++..... .-..|++.++.+
T Consensus 373 ~~Lt~~~~-~~~p~~spdG~~i~~~s~~~-g~~~L~~~~~~g 412 (433)
T PRK04922 373 RTLTPGSL-DESPSFAPNGSMVLYATREG-GRGVLAAVSTDG 412 (433)
T ss_pred EECCCCCC-CCCceECCCCCEEEEEEecC-CceEEEEEECCC
Confidence 99986543 23468999999999988763 335688888754
|
|
| >PRK13604 luxD acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=192.01 Aligned_cols=223 Identities=13% Similarity=0.085 Sum_probs=152.0
Q ss_pred ccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCC-CCCchhhhhcCCCCC
Q 003363 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS-LGFGEEALQSLPGKV 647 (826)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~-~g~G~~~~~~~~~~~ 647 (826)
...+|..+.||+..|++. ...+.++||++||-... ...+...+.+|+++||+|+.+|+||+ |+++.++.+..
T Consensus 15 ~~~dG~~L~Gwl~~P~~~-~~~~~~~vIi~HGf~~~--~~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~~t---- 87 (307)
T PRK13604 15 CLENGQSIRVWETLPKEN-SPKKNNTILIASGFARR--MDHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDEFT---- 87 (307)
T ss_pred EcCCCCEEEEEEEcCccc-CCCCCCEEEEeCCCCCC--hHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccccCc----
Confidence 445789999999999742 35678999999995543 23477889999999999999999875 55544432111
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhcc
Q 003363 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 727 (826)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~ 727 (826)
......|+.++++|+.++. .++|+|+||||||.++..+|... .++++|+.+|+.++.......-...+.......
T Consensus 88 ~s~g~~Dl~aaid~lk~~~---~~~I~LiG~SmGgava~~~A~~~--~v~~lI~~sp~~~l~d~l~~~~~~~~~~~p~~~ 162 (307)
T PRK13604 88 MSIGKNSLLTVVDWLNTRG---INNLGLIAASLSARIAYEVINEI--DLSFLITAVGVVNLRDTLERALGYDYLSLPIDE 162 (307)
T ss_pred ccccHHHHHHHHHHHHhcC---CCceEEEEECHHHHHHHHHhcCC--CCCEEEEcCCcccHHHHHHHhhhcccccCcccc
Confidence 1123789999999998863 46899999999999986666532 489999999999865332210000000000000
Q ss_pred CcCCccCCCCCC--hhhHHHH------hhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 003363 728 SKGKDSFTESPS--VEDLTRF------HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 799 (826)
Q Consensus 728 ~~~~~~~~~~~~--~~~~~~~------~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~ 799 (826)
......+.+... ....... ...+|+..+.+++.|+|+|||+.|..||++.+++++++++. .+.+++++||
T Consensus 163 lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s--~~kkl~~i~G 240 (307)
T PRK13604 163 LPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVKQSEVIDLLDSIRS--EQCKLYSLIG 240 (307)
T ss_pred cccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccCHHHHHHHHHHhcc--CCcEEEEeCC
Confidence 000000111111 0111111 12455677888899999999999999999999999998764 3589999999
Q ss_pred CCCCCC
Q 003363 800 DVHGIE 805 (826)
Q Consensus 800 ~~H~~~ 805 (826)
+.|.+.
T Consensus 241 a~H~l~ 246 (307)
T PRK13604 241 SSHDLG 246 (307)
T ss_pred CccccC
Confidence 999886
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-20 Score=207.15 Aligned_cols=243 Identities=14% Similarity=0.163 Sum_probs=177.8
Q ss_pred CCCeEEEEecCCCC---CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCC
Q 003363 164 SGSKLLVVRNPENE---SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 239 (826)
Q Consensus 164 dG~~la~~~~~~~~---~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~ 239 (826)
-..+|||++..... ..+++.++ +++..++++...... ..++|||||++|+|++.+.
T Consensus 161 f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~----------~~p~wSpDG~~la~~s~~~---------- 220 (430)
T PRK00178 161 FSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSREPI----------LSPRWSPDGKRIAYVSFEQ---------- 220 (430)
T ss_pred ceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCCCce----------eeeeECCCCCEEEEEEcCC----------
Confidence 45679998754322 23455555 444555555433332 6899999999999987543
Q ss_pred CCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeec
Q 003363 240 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 319 (826)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~ 319 (826)
+..+||++|+++|+.+.++ ........+.|||||+. |+|....
T Consensus 221 -------------------------------~~~~l~~~~l~~g~~~~l~--~~~g~~~~~~~SpDG~~----la~~~~~ 263 (430)
T PRK00178 221 -------------------------------KRPRIFVQNLDTGRREQIT--NFEGLNGAPAWSPDGSK----LAFVLSK 263 (430)
T ss_pred -------------------------------CCCEEEEEECCCCCEEEcc--CCCCCcCCeEECCCCCE----EEEEEcc
Confidence 3478999999999998884 33334457899999999 9998743
Q ss_pred CcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCC
Q 003363 320 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 399 (826)
Q Consensus 320 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~ 399 (826)
. ...+||++|+ ++++.++|+........|.|||||++|+|.+.+.
T Consensus 264 ~------------g~~~Iy~~d~-----------------~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~------ 308 (430)
T PRK00178 264 D------------GNPEIYVMDL-----------------ASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRG------ 308 (430)
T ss_pred C------------CCceEEEEEC-----------------CCCCeEEcccCCCCcCCeEECCCCCEEEEEECCC------
Confidence 2 2348999998 7888889998777778899999999999998764
Q ss_pred CcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc
Q 003363 400 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 479 (826)
Q Consensus 400 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~ 479 (826)
+..+||++|+.+++..+++... . ....+.|+|||+.|++.....+...|+.+|+.+++
T Consensus 309 --g~~~iy~~d~~~g~~~~lt~~~-------------~-------~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 309 --GKPQIYKVNVNGGRAERVTFVG-------------N-------YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred --CCceEEEEECCCCCEEEeecCC-------------C-------CccceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence 3468999999887654433110 0 11256899999999998876677789999999999
Q ss_pred EEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003363 480 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (826)
Q Consensus 480 ~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 522 (826)
.+.|+....+ ....|++||+.+++....... ..|++.++.+
T Consensus 367 ~~~lt~~~~~-~~p~~spdg~~i~~~~~~~g~-~~l~~~~~~g 407 (430)
T PRK00178 367 VRILTDTSLD-ESPSVAPNGTMLIYATRQQGR-GVLMLVSING 407 (430)
T ss_pred EEEccCCCCC-CCceECCCCCEEEEEEecCCc-eEEEEEECCC
Confidence 9999875443 346899999999888765443 4588877653
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-19 Score=201.04 Aligned_cols=254 Identities=16% Similarity=0.195 Sum_probs=182.3
Q ss_pred cceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-c
Q 003363 108 GTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-S 186 (826)
Q Consensus 108 g~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~ 186 (826)
+.+++|..... +.....||+++. .+...++++... ..+..|+|||||++|||+...+ +..+++.+. .
T Consensus 155 ~~~~~~~~~~~----~~~~~~l~~~d~--~g~~~~~l~~~~-----~~~~~p~~Spdg~~la~~~~~~-~~~~i~v~d~~ 222 (417)
T TIGR02800 155 STRIAYVSKSG----KSRRYELQVADY--DGANPQTITRSR-----EPILSPAWSPDGQKLAYVSFES-GKPEIYVQDLA 222 (417)
T ss_pred CCEEEEEEEeC----CCCcceEEEEcC--CCCCCEEeecCC-----CceecccCCCCCCEEEEEEcCC-CCcEEEEEECC
Confidence 45666765443 235667888775 344566676554 3478899999999999997654 456677666 4
Q ss_pred CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCcc
Q 003363 187 QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGET 266 (826)
Q Consensus 187 ~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~ 266 (826)
+++...+....... ..++|||||++|+|.....
T Consensus 223 ~g~~~~~~~~~~~~----------~~~~~spDg~~l~~~~~~~------------------------------------- 255 (417)
T TIGR02800 223 TGQREKVASFPGMN----------GAPAFSPDGSKLAVSLSKD------------------------------------- 255 (417)
T ss_pred CCCEEEeecCCCCc----------cceEECCCCCEEEEEECCC-------------------------------------
Confidence 55555554433222 5789999999999975432
Q ss_pred CCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEccccc
Q 003363 267 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 346 (826)
Q Consensus 267 ~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 346 (826)
+..+||++|+.+++.+.+ +........+.|+|||++ |+|++.+.. ..+||.+|+
T Consensus 256 ----~~~~i~~~d~~~~~~~~l--~~~~~~~~~~~~s~dg~~----l~~~s~~~g------------~~~iy~~d~---- 309 (417)
T TIGR02800 256 ----GNPDIYVMDLDGKQLTRL--TNGPGIDTEPSWSPDGKS----IAFTSDRGG------------SPQIYMMDA---- 309 (417)
T ss_pred ----CCccEEEEECCCCCEEEC--CCCCCCCCCEEECCCCCE----EEEEECCCC------------CceEEEEEC----
Confidence 346899999999998888 333334457899999999 999874321 237999998
Q ss_pred chhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeee
Q 003363 347 SEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 426 (826)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 426 (826)
.+++.++++........|.|||||++|+|..... +..+|+++|+.++..+.++...
T Consensus 310 -------------~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~--------~~~~i~~~d~~~~~~~~l~~~~--- 365 (417)
T TIGR02800 310 -------------DGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREG--------GGFNIAVMDLDGGGERVLTDTG--- 365 (417)
T ss_pred -------------CCCCEEEeecCCCCccCeEECCCCCEEEEEEccC--------CceEEEEEeCCCCCeEEccCCC---
Confidence 6777788887766778899999999999988653 3468999999875543332211
Q ss_pred eeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC
Q 003363 427 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 488 (826)
Q Consensus 427 ~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~ 488 (826)
....+.|+|||+.|++.+...+...++.++.+++..+.++...+
T Consensus 366 ------------------~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g 409 (417)
T TIGR02800 366 ------------------LDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLPLGNG 409 (417)
T ss_pred ------------------CCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECCCCCC
Confidence 12356899999999999888888889988887767777765543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PLN02298 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.2e-20 Score=197.57 Aligned_cols=246 Identities=15% Similarity=0.208 Sum_probs=159.1
Q ss_pred eccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCC
Q 003363 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (826)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~ 647 (826)
+...+|..+++..+.|.+ .....++||++||.+... ...+...+..|+++||.|+++|+||.|. +.........
T Consensus 37 ~~~~dg~~l~~~~~~~~~--~~~~~~~VvllHG~~~~~-~~~~~~~~~~L~~~Gy~V~~~D~rGhG~---S~~~~~~~~~ 110 (330)
T PLN02298 37 FTSPRGLSLFTRSWLPSS--SSPPRALIFMVHGYGNDI-SWTFQSTAIFLAQMGFACFALDLEGHGR---SEGLRAYVPN 110 (330)
T ss_pred EEcCCCCEEEEEEEecCC--CCCCceEEEEEcCCCCCc-ceehhHHHHHHHhCCCEEEEecCCCCCC---CCCccccCCC
Confidence 344578899998887753 224678999999975432 2245556778899999999999999543 3211000011
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCch------
Q 003363 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC------ 721 (826)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~------ 721 (826)
.....+|+.++++++......+..+++|+||||||.+++.++.++|++++++|+.+|......... +.|.
T Consensus 111 ~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~----~~~~~~~~~~ 186 (330)
T PLN02298 111 VDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIR----PPWPIPQILT 186 (330)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccC----CchHHHHHHH
Confidence 122368899999998875434456899999999999999999999999999999998754321100 0010
Q ss_pred hhhhccCc-----C--------------------CccCCCCCChhhHHHHhh-c-CcccccCCCCCcEEEEEeCCCCCCC
Q 003363 722 YVESYGSK-----G--------------------KDSFTESPSVEDLTRFHS-K-SPISHISKVKTPTIFLLGAQDLRVP 774 (826)
Q Consensus 722 ~~~~~~~~-----~--------------------~~~~~~~~~~~~~~~~~~-~-sp~~~~~~i~~PvLii~G~~D~~vp 774 (826)
....+... . ...+...+.......... . .....+.++++|+||+||++|.++|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~ivp 266 (330)
T PLN02298 187 FVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKDVSIPFIVLHGSADVVTD 266 (330)
T ss_pred HHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhhcCCCEEEEecCCCCCCC
Confidence 00000000 0 000000000000000000 0 0123456789999999999999999
Q ss_pred cHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCC---HHHHHHHHHHHHHHHc
Q 003363 775 VSNGLQYARALREKGVETKVIVFPNDVHGIERPQS---DFESFLNIGLWFKKYC 825 (826)
Q Consensus 775 ~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~---~~~~~~~i~~w~~~~l 825 (826)
++.++.+++++... ..+++++++++|.+...+. ...+...+.+|+.+++
T Consensus 267 ~~~~~~l~~~i~~~--~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~ 318 (330)
T PLN02298 267 PDVSRALYEEAKSE--DKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERC 318 (330)
T ss_pred HHHHHHHHHHhccC--CceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999998887642 3688899999999764332 2457788999999876
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.1e-20 Score=197.70 Aligned_cols=240 Identities=17% Similarity=0.176 Sum_probs=179.8
Q ss_pred ccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCcc
Q 003363 123 NKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVH 201 (826)
Q Consensus 123 ~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~ 201 (826)
+.....++..+-+ +.....++... .....|.|||||++++|+.-..++.++++.+. ..+...++.......
T Consensus 169 ~~~~~~l~~~D~d--g~~~~~l~~~~-----~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~- 240 (425)
T COG0823 169 GPLPYELALGDYD--GYNQQKLTDSG-----SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN- 240 (425)
T ss_pred CCCCceEEEEccC--CcceeEecccC-----cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc-
Confidence 3456677776643 44455555554 34778999999999999987664547788777 666666666644333
Q ss_pred ccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEcc
Q 003363 202 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 281 (826)
Q Consensus 202 g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 281 (826)
..++|||||++|+|...+. +..+||++|+.
T Consensus 241 ---------~~P~fspDG~~l~f~~~rd-----------------------------------------g~~~iy~~dl~ 270 (425)
T COG0823 241 ---------GAPAFSPDGSKLAFSSSRD-----------------------------------------GSPDIYLMDLD 270 (425)
T ss_pred ---------CCccCCCCCCEEEEEECCC-----------------------------------------CCccEEEEcCC
Confidence 6899999999999997765 45899999999
Q ss_pred CCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCC
Q 003363 282 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 361 (826)
Q Consensus 282 ~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 361 (826)
+++.++| +........+.|||||++ |||++++.+ ..+||++++ ++
T Consensus 271 ~~~~~~L--t~~~gi~~~Ps~spdG~~----ivf~Sdr~G------------~p~I~~~~~-----------------~g 315 (425)
T COG0823 271 GKNLPRL--TNGFGINTSPSWSPDGSK----IVFTSDRGG------------RPQIYLYDL-----------------EG 315 (425)
T ss_pred CCcceec--ccCCccccCccCCCCCCE----EEEEeCCCC------------CcceEEECC-----------------CC
Confidence 9998888 455445558999999999 999985433 238999998 88
Q ss_pred CcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCC-CCcccceeeeeeeeeccCCCCCcc
Q 003363 362 LPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLEKIVDVIPVVQCAEGDCFPG 440 (826)
Q Consensus 362 ~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~g 440 (826)
+..+++|...+....|.|||||++|+|.+... +...+...|+.++.. +.++...
T Consensus 316 ~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~--------g~~~i~~~~~~~~~~~~~lt~~~----------------- 370 (425)
T COG0823 316 SQVTRLTFSGGGNSNPVWSPDGDKIVFESSSG--------GQWDIDKNDLASGGKIRILTSTY----------------- 370 (425)
T ss_pred CceeEeeccCCCCcCccCCCCCCEEEEEeccC--------CceeeEEeccCCCCcEEEccccc-----------------
Confidence 88899999888878999999999999999442 226788888877663 2222221
Q ss_pred cccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003363 441 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (826)
Q Consensus 441 ~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt 484 (826)
....+.|++||+.+++.+...+...++.++..+.....+.
T Consensus 371 ----~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~~~~ 410 (425)
T COG0823 371 ----LNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSRPLP 410 (425)
T ss_pred ----cCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEEEEe
Confidence 2246789999999999988888889999887544333443
|
|
| >KOG1455 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-20 Score=182.97 Aligned_cols=250 Identities=15% Similarity=0.178 Sum_probs=174.3
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCC
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~ 646 (826)
-+++.+|..+....+.|.. ..+++.+|+++||.+... ...|...+..|+..||.|+++|++|.|. +......-.
T Consensus 31 ~~~n~rG~~lft~~W~p~~--~~~pr~lv~~~HG~g~~~-s~~~~~~a~~l~~~g~~v~a~D~~GhG~---SdGl~~yi~ 104 (313)
T KOG1455|consen 31 FFTNPRGAKLFTQSWLPLS--GTEPRGLVFLCHGYGEHS-SWRYQSTAKRLAKSGFAVYAIDYEGHGR---SDGLHAYVP 104 (313)
T ss_pred eEEcCCCCEeEEEecccCC--CCCCceEEEEEcCCcccc-hhhHHHHHHHHHhCCCeEEEeeccCCCc---CCCCcccCC
Confidence 4566788899999999974 347888999999965432 3567778899999999999999999544 332111112
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhc------------cC
Q 003363 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV------------GT 714 (826)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~------------~~ 714 (826)
-...-++|+...++.++.+.....-+.+++||||||.+++.++.++|+.+.++|+.+|.+-+..-. -.
T Consensus 105 ~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~p~v~~~l~~l~ 184 (313)
T KOG1455|consen 105 SFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPHPPVISILTLLS 184 (313)
T ss_pred cHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCCcHHHHHHHHHH
Confidence 223347888888888777654455679999999999999999999999999999999977542111 01
Q ss_pred CCCCCchhhhhcc---------------CcCCccCCCCCChhhH-HHHh-hcCcccccCCCCCcEEEEEeCCCCCCCcHH
Q 003363 715 TDIPDWCYVESYG---------------SKGKDSFTESPSVEDL-TRFH-SKSPISHISKVKTPTIFLLGAQDLRVPVSN 777 (826)
Q Consensus 715 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~-~~~~-~~sp~~~~~~i~~PvLii~G~~D~~vp~~~ 777 (826)
.-+|.|.....-. ......+.+.|..... +.++ .......+.+++.|+||+||+.|.++.+..
T Consensus 185 ~liP~wk~vp~~d~~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~vtvPflilHG~dD~VTDp~~ 264 (313)
T KOG1455|consen 185 KLIPTWKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNEVTVPFLILHGTDDKVTDPKV 264 (313)
T ss_pred HhCCceeecCCccccccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcccccccEEEEecCCCcccCcHH
Confidence 1233443111100 0011122222222111 1111 112235678899999999999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCCCCCCC---CCCCHHHHHHHHHHHHHHH
Q 003363 778 GLQYARALREKGVETKVIVFPNDVHGIE---RPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 778 ~~~~~~~l~~~g~~~~~~~~p~~~H~~~---~~~~~~~~~~~i~~w~~~~ 824 (826)
++++|+..... +.++.+|||.-|.+. .+++...++..|++|++++
T Consensus 265 Sk~Lye~A~S~--DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 265 SKELYEKASSS--DKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred HHHHHHhccCC--CCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 99999998775 456779999999987 3566677899999999876
|
|
| >PHA02857 monoglyceride lipase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=191.20 Aligned_cols=243 Identities=15% Similarity=0.147 Sum_probs=159.9
Q ss_pred eccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCC
Q 003363 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (826)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~ 647 (826)
+.+.+|..+.+.+|.|. ..+.|+|+++||.+.. ...|...+..|+++||.|+++|+||.| .+.........
T Consensus 5 ~~~~~g~~l~~~~~~~~----~~~~~~v~llHG~~~~--~~~~~~~~~~l~~~g~~via~D~~G~G---~S~~~~~~~~~ 75 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPI----TYPKALVFISHGAGEH--SGRYEELAENISSLGILVFSHDHIGHG---RSNGEKMMIDD 75 (276)
T ss_pred eecCCCCEEEEEeccCC----CCCCEEEEEeCCCccc--cchHHHHHHHHHhCCCEEEEccCCCCC---CCCCccCCcCC
Confidence 45568889999999884 3456899999996544 567888899999999999999999954 33211110011
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh-------------ccC
Q 003363 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-------------VGT 714 (826)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~-------------~~~ 714 (826)
....++|+...++++.+. ....++.|+|||+||.+++.++.++|++++++|+.+|..+.... ...
T Consensus 76 ~~~~~~d~~~~l~~~~~~--~~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~~~~~~ 153 (276)
T PHA02857 76 FGVYVRDVVQHVVTIKST--YPGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLMGIFYP 153 (276)
T ss_pred HHHHHHHHHHHHHHHHhh--CCCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHHHHhCC
Confidence 112367777777776654 23467999999999999999999999999999999997542110 000
Q ss_pred CC-CC----Cchhh---h--hccCcCCccCCCCCChhhHHHHhh--cCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHH
Q 003363 715 TD-IP----DWCYV---E--SYGSKGKDSFTESPSVEDLTRFHS--KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 782 (826)
Q Consensus 715 ~~-~~----~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~--~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~ 782 (826)
.. .. .+... + .+..... ................ ......+.++++|+|+++|++|.++|+..+.+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~l~ 232 (276)
T PHA02857 154 NKIVGKLCPESVSRDMDEVYKYQYDPL-VNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGTNNEISDVSGAYYFM 232 (276)
T ss_pred CCccCCCCHhhccCCHHHHHHHhcCCC-ccCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecCCCCcCChHHHHHHH
Confidence 00 00 00000 0 0000000 0000000000000000 0112356788999999999999999999999998
Q ss_pred HHHHhCCCCEEEEEeCCCCCCCCCCCC--HHHHHHHHHHHHHHHc
Q 003363 783 RALREKGVETKVIVFPNDVHGIERPQS--DFESFLNIGLWFKKYC 825 (826)
Q Consensus 783 ~~l~~~g~~~~~~~~p~~~H~~~~~~~--~~~~~~~i~~w~~~~l 825 (826)
+.+.. .+++.++++++|.+..+.. ..++++.+.+||+++.
T Consensus 233 ~~~~~---~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~~ 274 (276)
T PHA02857 233 QHANC---NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNRV 274 (276)
T ss_pred HHccC---CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHhc
Confidence 87743 4789999999999876644 6789999999999864
|
|
| >PLN02385 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=197.64 Aligned_cols=249 Identities=14% Similarity=0.154 Sum_probs=158.2
Q ss_pred eccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCC
Q 003363 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (826)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~ 647 (826)
..+.+|..+.+..+.|. ...+.|+||++||.+... ...|...+..|+++||.|+++|+||.| .+.........
T Consensus 66 ~~~~~g~~l~~~~~~p~---~~~~~~~iv~lHG~~~~~-~~~~~~~~~~l~~~g~~v~~~D~~G~G---~S~~~~~~~~~ 138 (349)
T PLN02385 66 EVNSRGVEIFSKSWLPE---NSRPKAAVCFCHGYGDTC-TFFFEGIARKIASSGYGVFAMDYPGFG---LSEGLHGYIPS 138 (349)
T ss_pred EEcCCCCEEEEEEEecC---CCCCCeEEEEECCCCCcc-chHHHHHHHHHHhCCCEEEEecCCCCC---CCCCCCCCcCC
Confidence 44567889999898886 235679999999965432 123456778899999999999999954 33211000001
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC------------C
Q 003363 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT------------T 715 (826)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~------------~ 715 (826)
....++|+.+.++.+......+..++.|+||||||.+++.++.++|++++++|+.+|.......... .
T Consensus 139 ~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~~~~~~~~~~~~ 218 (349)
T PLN02385 139 FDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPPLVLQILILLAN 218 (349)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCchHHHHHHHHHHH
Confidence 1123567777777765543345568999999999999999999999999999999986542110000 0
Q ss_pred CCCCchh------hhh-ccCc--------CCccCCCCCChh-hHHHHhh-cCcccccCCCCCcEEEEEeCCCCCCCcHHH
Q 003363 716 DIPDWCY------VES-YGSK--------GKDSFTESPSVE-DLTRFHS-KSPISHISKVKTPTIFLLGAQDLRVPVSNG 778 (826)
Q Consensus 716 ~~~~~~~------~~~-~~~~--------~~~~~~~~~~~~-~~~~~~~-~sp~~~~~~i~~PvLii~G~~D~~vp~~~~ 778 (826)
..+.+.. ... +... ....+...+... ..+.+.. ......+.++++|+|++||++|.++|+..+
T Consensus 219 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~~P~Lii~G~~D~vv~~~~~ 298 (349)
T PLN02385 219 LLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVSLPLLILHGEADKVTDPSVS 298 (349)
T ss_pred HCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCCCCEEEEEeCCCCccChHHH
Confidence 0000000 000 0000 000000000000 0111111 111234678899999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCH---HHHHHHHHHHHHHHc
Q 003363 779 LQYARALREKGVETKVIVFPNDVHGIERPQSD---FESFLNIGLWFKKYC 825 (826)
Q Consensus 779 ~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~---~~~~~~i~~w~~~~l 825 (826)
+.+++.+.. .+.+++++|+++|.+...+.. ..++..|.+||++++
T Consensus 299 ~~l~~~~~~--~~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~ 346 (349)
T PLN02385 299 KFLYEKASS--SDKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHS 346 (349)
T ss_pred HHHHHHcCC--CCceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhc
Confidence 999888753 246888999999998654432 348889999999886
|
|
| >PLN02442 S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=188.51 Aligned_cols=233 Identities=15% Similarity=0.130 Sum_probs=151.0
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch---HHHHHHHHCCcEEEEECCCCCC--C----------Cc
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVNYRGSL--G----------FG 636 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~---~~~~~la~~G~~Vl~~d~rG~~--g----------~G 636 (826)
-+..+...+|.|+. ...+++|+|+++||++... ..|. ...+.++..||+|+.+|..+.+ . .|
T Consensus 28 l~~~~~~~vy~P~~-~~~~~~Pvv~~lHG~~~~~--~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~~~~~~~~~~~ 104 (283)
T PLN02442 28 LGCSMTFSVYFPPA-SDSGKVPVLYWLSGLTCTD--ENFIQKSGAQRAAAARGIALVAPDTSPRGLNVEGEADSWDFGVG 104 (283)
T ss_pred cCCceEEEEEcCCc-ccCCCCCEEEEecCCCcCh--HHHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCCCccccccCCC
Confidence 35668888999983 3467899999999976543 2232 2345667889999999975422 1 11
Q ss_pred hhhh-hcCCCCCC-----cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh
Q 003363 637 EEAL-QSLPGKVG-----SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710 (826)
Q Consensus 637 ~~~~-~~~~~~~~-----~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~ 710 (826)
..+. +.....+. ....+++...++...+ .+|.++++|+|+||||++++.++.++|++|+++++.+|++++..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~~~ 182 (283)
T PLN02442 105 AGFYLNATQEKWKNWRMYDYVVKELPKLLSDNFD--QLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVSAFAPIANPIN 182 (283)
T ss_pred cceeeccccCCCcccchhhhHHHHHHHHHHHHHH--hcCCCceEEEEEChhHHHHHHHHHhCchhEEEEEEECCccCccc
Confidence 1110 00011111 1123334333333322 26889999999999999999999999999999999999877431
Q ss_pred hccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcH-HHHHHHHHHHhCC
Q 003363 711 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVS-NGLQYARALREKG 789 (826)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~-~~~~~~~~l~~~g 789 (826)
. .|.. .. ...+.+.+ .+..+.+...+++..+...++|+|++||++|.+++.. ++..+++++++.|
T Consensus 183 ~-------~~~~-~~-----~~~~~g~~-~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~~g 248 (283)
T PLN02442 183 C-------PWGQ-KA-----FTNYLGSD-KADWEEYDATELVSKFNDVSATILIDQGEADKFLKEQLLPENFEEACKEAG 248 (283)
T ss_pred C-------chhh-HH-----HHHHcCCC-hhhHHHcChhhhhhhccccCCCEEEEECCCCccccccccHHHHHHHHHHcC
Confidence 1 0110 00 00111111 2233444445555666677899999999999999874 6889999999999
Q ss_pred CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 790 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 790 ~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
.++++.++|+.+|.+. ....+..+.+.|..+++|
T Consensus 249 ~~~~~~~~pg~~H~~~---~~~~~i~~~~~~~~~~~~ 282 (283)
T PLN02442 249 APVTLRLQPGYDHSYF---FIATFIDDHINHHAQALK 282 (283)
T ss_pred CCeEEEEeCCCCccHH---HHHHHHHHHHHHHHHHhc
Confidence 9999999999999865 222334445556655553
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=194.09 Aligned_cols=233 Identities=17% Similarity=0.156 Sum_probs=162.3
Q ss_pred CCeEEEEecCCCC--CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCC
Q 003363 165 GSKLLVVRNPENE--SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST 241 (826)
Q Consensus 165 G~~la~~~~~~~~--~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~ 241 (826)
+++|||++...++ ...++..+ ++...+.++...... ..+.|||||++|||++.+.
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~~~v----------~~p~wSPDG~~la~~s~~~------------ 225 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSSQPL----------MSPAWSPDGSKLAYVSFEN------------ 225 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCCCCceEeccCCCcc----------ccceEcCCCCEEEEEEecC------------
Confidence 6899999865432 23444444 344444444432223 7899999999999987543
Q ss_pred CCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCc
Q 003363 242 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 321 (826)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~ 321 (826)
..++||++|+.+|+.+.+. ........++|||||+. |+|.....
T Consensus 226 -----------------------------~~~~i~i~dl~tg~~~~l~--~~~g~~~~~~wSPDG~~----La~~~~~~- 269 (429)
T PRK01742 226 -----------------------------KKSQLVVHDLRSGARKVVA--SFRGHNGAPAFSPDGSR----LAFASSKD- 269 (429)
T ss_pred -----------------------------CCcEEEEEeCCCCceEEEe--cCCCccCceeECCCCCE----EEEEEecC-
Confidence 3478999999999887773 22223457899999999 99986322
Q ss_pred ceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCc
Q 003363 322 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401 (826)
Q Consensus 322 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~ 401 (826)
...+||.+|+ .++..++|+.+......|.|||||++|+|.+.+.
T Consensus 270 -----------g~~~Iy~~d~-----------------~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~-------- 313 (429)
T PRK01742 270 -----------GVLNIYVMGA-----------------NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRS-------- 313 (429)
T ss_pred -----------CcEEEEEEEC-----------------CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCC--------
Confidence 2236999998 7788899998877788999999999999998764
Q ss_pred ccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003363 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (826)
Q Consensus 402 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~ 481 (826)
+..+||.++..++....++. . . ..+.|+|||+.|++... ..++.+|+.+|+.+
T Consensus 314 g~~~I~~~~~~~~~~~~l~~-----------------~-----~-~~~~~SpDG~~ia~~~~----~~i~~~Dl~~g~~~ 366 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGG-----------------R-----G-YSAQISADGKTLVMING----DNVVKQDLTSGSTE 366 (429)
T ss_pred CCceEEEEECCCCCeEEecC-----------------C-----C-CCccCCCCCCEEEEEcC----CCEEEEECCCCCeE
Confidence 34689999876644322110 0 1 24579999999988653 35778999999988
Q ss_pred EecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEee
Q 003363 482 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 520 (826)
Q Consensus 482 ~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 520 (826)
.++.... .....|+|||+.+++.... ..-..+++.+.
T Consensus 367 ~lt~~~~-~~~~~~sPdG~~i~~~s~~-g~~~~l~~~~~ 403 (429)
T PRK01742 367 VLSSTFL-DESPSISPNGIMIIYSSTQ-GLGKVLQLVSA 403 (429)
T ss_pred EecCCCC-CCCceECCCCCEEEEEEcC-CCceEEEEEEC
Confidence 8875432 2446799999988888754 33333444443
|
|
| >PRK05077 frsA fermentation/respiration switch protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-19 Score=193.44 Aligned_cols=232 Identities=14% Similarity=0.135 Sum_probs=150.6
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcc
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~ 650 (826)
.+|..+.|+++.|+ ..++.|+||+.|| ..+.....|...+..|+++||+|+++|+||.|..... + ....
T Consensus 176 ~~g~~l~g~l~~P~---~~~~~P~Vli~gG-~~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G~s~~~-----~--~~~d 244 (414)
T PRK05077 176 PGGGPITGFLHLPK---GDGPFPTVLVCGG-LDSLQTDYYRLFRDYLAPRGIAMLTIDMPSVGFSSKW-----K--LTQD 244 (414)
T ss_pred CCCcEEEEEEEECC---CCCCccEEEEeCC-cccchhhhHHHHHHHHHhCCCEEEEECCCCCCCCCCC-----C--cccc
Confidence 45668999999997 3567898776555 3332223466677889999999999999995432110 0 1111
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchh-hhcc-CCCCCCchhhhhccC
Q 003363 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-LMVG-TTDIPDWCYVESYGS 728 (826)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~-~~~~-~~~~~~~~~~~~~~~ 728 (826)
......++++++.+.+.+|.+||+++|||+||++++.++..+|++++++|+.+|+++.. .... ....+.. +...+..
T Consensus 245 ~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~~~~~p~~-~~~~la~ 323 (414)
T PRK05077 245 SSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKRQQQVPEM-YLDVLAS 323 (414)
T ss_pred HHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhhhhhchHH-HHHHHHH
Confidence 12233577889988888999999999999999999999998899999999999876421 0000 0000100 0000000
Q ss_pred cCCccCCC-CCChhh-HHHHhhcCcc--cc-cCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCC
Q 003363 729 KGKDSFTE-SPSVED-LTRFHSKSPI--SH-ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803 (826)
Q Consensus 729 ~~~~~~~~-~~~~~~-~~~~~~~sp~--~~-~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~ 803 (826)
.+.. ....+. ...+...+.. .. ..++++|+|++||++|.++|+++++.+.+... +.+++++|++ |.
T Consensus 324 ----~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~~----~~~l~~i~~~-~~ 394 (414)
T PRK05077 324 ----RLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLIASSSA----DGKLLEIPFK-PV 394 (414)
T ss_pred ----HhCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCCHHHHHHHHHhCC----CCeEEEccCC-Cc
Confidence 0000 001111 1111112211 11 25789999999999999999999987766554 3688999986 32
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcC
Q 003363 804 IERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 804 ~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
+ +...+++..+.+||+++|.
T Consensus 395 ~---e~~~~~~~~i~~wL~~~l~ 414 (414)
T PRK05077 395 Y---RNFDKALQEISDWLEDRLC 414 (414)
T ss_pred c---CCHHHHHHHHHHHHHHHhC
Confidence 2 3456889999999999873
|
|
| >PRK10749 lysophospholipase L2; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.3e-19 Score=189.57 Aligned_cols=248 Identities=18% Similarity=0.230 Sum_probs=155.8
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCC
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~ 646 (826)
.+...+|..+++..+.|. .+.++||++||.... ...|...+..|+++||.|+++|+||.|.++........+.
T Consensus 34 ~~~~~~g~~l~~~~~~~~-----~~~~~vll~HG~~~~--~~~y~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~ 106 (330)
T PRK10749 34 EFTGVDDIPIRFVRFRAP-----HHDRVVVICPGRIES--YVKYAELAYDLFHLGYDVLIIDHRGQGRSGRLLDDPHRGH 106 (330)
T ss_pred EEEcCCCCEEEEEEccCC-----CCCcEEEEECCccch--HHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCCCCCcCc
Confidence 445567788888777653 234789999996433 3356677778899999999999999654432211000011
Q ss_pred C--CcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhcc-----------
Q 003363 647 V--GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG----------- 713 (826)
Q Consensus 647 ~--~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~----------- 713 (826)
. ...-++|+.++++.+.+. .+..++.++||||||.+++.++.++|+.++++|+.+|.........
T Consensus 107 ~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~ 184 (330)
T PRK10749 107 VERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLPLPSWMARRILNWA 184 (330)
T ss_pred cccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCCCCcHHHHHHHHHH
Confidence 1 111245566666655443 2457899999999999999999999999999999998653210000
Q ss_pred --CCC--------CCCchhhhhccCc-----------CCccCCCCC-------ChhhH-HHHhh-cCcccccCCCCCcEE
Q 003363 714 --TTD--------IPDWCYVESYGSK-----------GKDSFTESP-------SVEDL-TRFHS-KSPISHISKVKTPTI 763 (826)
Q Consensus 714 --~~~--------~~~~~~~~~~~~~-----------~~~~~~~~~-------~~~~~-~~~~~-~sp~~~~~~i~~PvL 763 (826)
... ...|.... +... ....+...+ ..... ..+.. ......+.++++|+|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~L 263 (330)
T PRK10749 185 EGHPRIRDGYAIGTGRWRPLP-FAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVRESILAGEQVLAGAGDITTPLL 263 (330)
T ss_pred HHhcCCCCcCCCCCCCCCCCC-cCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHHHHHHHHHHHHhhccCCCCCEE
Confidence 000 00000000 0000 000000000 00000 00000 011234677899999
Q ss_pred EEEeCCCCCCCcHHHHHHHHHHHhCC---CCEEEEEeCCCCCCCCCCCC--HHHHHHHHHHHHHHH
Q 003363 764 FLLGAQDLRVPVSNGLQYARALREKG---VETKVIVFPNDVHGIERPQS--DFESFLNIGLWFKKY 824 (826)
Q Consensus 764 ii~G~~D~~vp~~~~~~~~~~l~~~g---~~~~~~~~p~~~H~~~~~~~--~~~~~~~i~~w~~~~ 824 (826)
++||++|..++++.++.+++.+++.+ ..+++++|||++|.+..+.. ...+++.|++||+++
T Consensus 264 ii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 264 LLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred EEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999998765 34689999999999876554 667889999999875
|
|
| >PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-19 Score=180.99 Aligned_cols=204 Identities=24% Similarity=0.323 Sum_probs=142.6
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCC--Cchh-----hhhcCCCCCC
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLG--FGEE-----ALQSLPGKVG 648 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g--~G~~-----~~~~~~~~~~ 648 (826)
+.+++..|.+ .++.|.||++|+..+. .......+..|+++||.|++||+-+..+ .... ..........
T Consensus 1 ~~ay~~~P~~---~~~~~~Vvv~~d~~G~--~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (218)
T PF01738_consen 1 IDAYVARPEG---GGPRPAVVVIHDIFGL--NPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPRP 75 (218)
T ss_dssp EEEEEEEETT---SSSEEEEEEE-BTTBS---HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHSH
T ss_pred CeEEEEeCCC---CCCCCEEEEEcCCCCC--chHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhhH
Confidence 4678999984 3789999999995543 2445567889999999999999755332 1110 0000000011
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccC
Q 003363 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 728 (826)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 728 (826)
.....|+.+++++|.+++.++.+||+++|+|+||.+++.++.+. +.++++|...|...
T Consensus 76 ~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~--------------------- 133 (218)
T PF01738_consen 76 EQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSP--------------------- 133 (218)
T ss_dssp HHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSS---------------------
T ss_pred HHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCC---------------------
Confidence 22357888999999998878899999999999999999998876 68999998877100
Q ss_pred cCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCC
Q 003363 729 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 808 (826)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~ 808 (826)
+ ..+.....++++|+|+++|+.|+.++.+...++.+.|+++|.++++++|||++|+|..+.
T Consensus 134 ---------~----------~~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~ 194 (218)
T PF01738_consen 134 ---------P----------PPPLEDAPKIKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPS 194 (218)
T ss_dssp ---------G----------GGHHHHGGG--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTT
T ss_pred ---------C----------CcchhhhcccCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCC
Confidence 0 001223456789999999999999999999999999999999999999999999997543
Q ss_pred C-------HHHHHHHHHHHHHHHc
Q 003363 809 S-------DFESFLNIGLWFKKYC 825 (826)
Q Consensus 809 ~-------~~~~~~~i~~w~~~~l 825 (826)
. ..+.++++++||++||
T Consensus 195 ~~~~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 195 RPPYDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp STT--HHHHHHHHHHHHHHHCC--
T ss_pred CcccCHHHHHHHHHHHHHHHHhcC
Confidence 3 3578889999999987
|
Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.4e-18 Score=189.59 Aligned_cols=244 Identities=15% Similarity=0.147 Sum_probs=177.4
Q ss_pred CCCCCeEEEEecCC-CCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCC
Q 003363 162 SPSGSKLLVVRNPE-NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 239 (826)
Q Consensus 162 SPdG~~la~~~~~~-~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~ 239 (826)
.+.|.+++|++... ++...++.++ +++..++++...... ..+.|||||++|||.....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~----------~~p~~Spdg~~la~~~~~~---------- 211 (417)
T TIGR02800 152 GAFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSREPI----------LSPAWSPDGQKLAYVSFES---------- 211 (417)
T ss_pred CCcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCCce----------ecccCCCCCCEEEEEEcCC----------
Confidence 45678899998764 3455577666 445666666543323 6889999999999986432
Q ss_pred CCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeec
Q 003363 240 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 319 (826)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~ 319 (826)
+...|+++|+.+|+.+.+. ........+.|+|||+. |+|....
T Consensus 212 -------------------------------~~~~i~v~d~~~g~~~~~~--~~~~~~~~~~~spDg~~----l~~~~~~ 254 (417)
T TIGR02800 212 -------------------------------GKPEIYVQDLATGQREKVA--SFPGMNGAPAFSPDGSK----LAVSLSK 254 (417)
T ss_pred -------------------------------CCcEEEEEECCCCCEEEee--cCCCCccceEECCCCCE----EEEEECC
Confidence 2368999999999887773 33334456899999999 9987632
Q ss_pred CcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCC
Q 003363 320 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 399 (826)
Q Consensus 320 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~ 399 (826)
+....||.+|+ .++..++|+........|.|+|||++|+|.+.+.
T Consensus 255 ------------~~~~~i~~~d~-----------------~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~------ 299 (417)
T TIGR02800 255 ------------DGNPDIYVMDL-----------------DGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRG------ 299 (417)
T ss_pred ------------CCCccEEEEEC-----------------CCCCEEECCCCCCCCCCEEECCCCCEEEEEECCC------
Confidence 12347999998 7778888887766667899999999999998764
Q ss_pred CcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc
Q 003363 400 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 479 (826)
Q Consensus 400 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~ 479 (826)
+..+||++|+.+++...++... .....+.|+|||+.|+++....+...|+.+|+.++.
T Consensus 300 --g~~~iy~~d~~~~~~~~l~~~~--------------------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 300 --GSPQIYMMDADGGEVRRLTFRG--------------------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred --CCceEEEEECCCCCEEEeecCC--------------------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 2358999998876543332111 012367899999999998776677899999999988
Q ss_pred EEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 003363 480 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 480 ~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 521 (826)
.+.++.... .....|++||+.+++....... ..+++.+..
T Consensus 358 ~~~l~~~~~-~~~p~~spdg~~l~~~~~~~~~-~~l~~~~~~ 397 (417)
T TIGR02800 358 ERVLTDTGL-DESPSFAPNGRMILYATTRGGR-GVLGLVSTD 397 (417)
T ss_pred eEEccCCCC-CCCceECCCCCEEEEEEeCCCc-EEEEEEECC
Confidence 888876433 2345799999999988876554 467766643
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02821 fghA_ester_D S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-18 Score=179.08 Aligned_cols=233 Identities=11% Similarity=0.053 Sum_probs=151.3
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHH-HHCCcEEEEECC--CCCCCCch--hhh------
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFL-SSVGYSLLIVNY--RGSLGFGE--EAL------ 640 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~l-a~~G~~Vl~~d~--rG~~g~G~--~~~------ 640 (826)
-+.++.+.+|.|+++. .+++|+|+++||.+.......+...++.+ ++.||.|++||. ||.+..+. .|.
T Consensus 23 ~~~~~~~~v~~P~~~~-~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~~~~~w~~g~~~~ 101 (275)
T TIGR02821 23 CGVPMTFGVFLPPQAA-AGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAGEDDAWDFGKGAG 101 (275)
T ss_pred cCCceEEEEEcCCCcc-CCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCCCcccccccCCcc
Confidence 3567888999998643 45689999999977553221112223344 567999999997 55432221 110
Q ss_pred ---hcCCCCCC--cchHHHHHHHHHHHHHc-CCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC
Q 003363 641 ---QSLPGKVG--SQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 714 (826)
Q Consensus 641 ---~~~~~~~~--~~~~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~ 714 (826)
+.....+. ......+...+..+++. ..+|.++++|+|+||||++++.++.++|+.|+++++.+|+.+....
T Consensus 102 ~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~~~~--- 178 (275)
T TIGR02821 102 FYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFAPIVAPSRC--- 178 (275)
T ss_pred ccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEECCccCcccC---
Confidence 00000000 01123334444444443 4478899999999999999999999999999999999998764311
Q ss_pred CCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccC--CCCCcEEEEEeCCCCCCCc-HHHHHHHHHHHhCCCC
Q 003363 715 TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS--KVKTPTIFLLGAQDLRVPV-SNGLQYARALREKGVE 791 (826)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~--~i~~PvLii~G~~D~~vp~-~~~~~~~~~l~~~g~~ 791 (826)
....... .. +.+... +.+...+|...+. ...+|++++||+.|..+|. .+...+.++|+++|++
T Consensus 179 -~~~~~~~-~~--------~l~~~~----~~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~~~~~~~~~~~~l~~~g~~ 244 (275)
T TIGR02821 179 -PWGQKAF-SA--------YLGADE----AAWRSYDASLLVADGGRHSTILIDQGTADQFLDEQLRPDAFEQACRAAGQA 244 (275)
T ss_pred -cchHHHH-HH--------Hhcccc----cchhhcchHHHHhhcccCCCeeEeecCCCcccCccccHHHHHHHHHHcCCC
Confidence 0000001 10 111111 1122334444333 2458999999999999999 6889999999999999
Q ss_pred EEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 792 TKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 792 ~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
+++.++||++|++... .....+.++|+.+++
T Consensus 245 v~~~~~~g~~H~f~~~---~~~~~~~~~~~~~~~ 275 (275)
T TIGR02821 245 LTLRRQAGYDHSYYFI---ASFIADHLRHHAERL 275 (275)
T ss_pred eEEEEeCCCCccchhH---HHhHHHHHHHHHhhC
Confidence 9999999999998633 355678888887764
|
This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. |
| >COG1647 Esterase/lipase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.6e-19 Score=164.21 Aligned_cols=210 Identities=17% Similarity=0.201 Sum_probs=153.6
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCc
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 672 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 672 (826)
..|+++||..++ ......+.++|.++||.|.+|+|+|++-....+....+..| ++|+.++.++|.+.++ +.
T Consensus 16 ~AVLllHGFTGt--~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~gy---~e 86 (243)
T COG1647 16 RAVLLLHGFTGT--PRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAGY---DE 86 (243)
T ss_pred EEEEEEeccCCC--cHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcCC---Ce
Confidence 789999996555 56778889999999999999999997665556554444443 7899999999998764 78
Q ss_pred EEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC-CCCCCchhhhhccCcCCccCCCCCChhhHHHHhhc--
Q 003363 673 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK-- 749 (826)
Q Consensus 673 v~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 749 (826)
|+++|.||||.+++.++.++| .+++|.+|+..+....... ...-. +... .+.+.+.......+.+...
T Consensus 87 I~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~--y~~~-----~kk~e~k~~e~~~~e~~~~~~ 157 (243)
T COG1647 87 IAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLE--YFRN-----AKKYEGKDQEQIDKEMKSYKD 157 (243)
T ss_pred EEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHH--HHHH-----hhhccCCCHHHHHHHHHHhhc
Confidence 999999999999999999988 7888877776543211000 00000 0011 1111111111111112211
Q ss_pred --------------CcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHH
Q 003363 750 --------------SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFL 815 (826)
Q Consensus 750 --------------sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~ 815 (826)
.....++.|..|+|++.|.+|+.||.+.+..+++.+.. .+.++.+|++.||.+.....+.++.+
T Consensus 158 ~~~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s--~~KeL~~~e~SgHVIt~D~Erd~v~e 235 (243)
T COG1647 158 TPMTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVES--DDKELKWLEGSGHVITLDKERDQVEE 235 (243)
T ss_pred chHHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCCHHHHHHHHHhccC--CcceeEEEccCCceeecchhHHHHHH
Confidence 12356788999999999999999999999999999876 46789999999999998888889999
Q ss_pred HHHHHHH
Q 003363 816 NIGLWFK 822 (826)
Q Consensus 816 ~i~~w~~ 822 (826)
.+..||+
T Consensus 236 ~V~~FL~ 242 (243)
T COG1647 236 DVITFLE 242 (243)
T ss_pred HHHHHhh
Confidence 9999996
|
|
| >PLN02652 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-18 Score=183.89 Aligned_cols=246 Identities=13% Similarity=0.122 Sum_probs=156.5
Q ss_pred eccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCC
Q 003363 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (826)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~ 647 (826)
+...++..+.+..+.|. ...+.|+||++||.+.. ...|...+..|+++||.|+++|+||.+..... ......
T Consensus 115 ~~~~~~~~l~~~~~~p~---~~~~~~~Vl~lHG~~~~--~~~~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~---~~~~~~ 186 (395)
T PLN02652 115 FYGARRNALFCRSWAPA---AGEMRGILIIIHGLNEH--SGRYLHFAKQLTSCGFGVYAMDWIGHGGSDGL---HGYVPS 186 (395)
T ss_pred EECCCCCEEEEEEecCC---CCCCceEEEEECCchHH--HHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCC---CCCCcC
Confidence 44556677888888875 34457899999997644 34577788899999999999999995543221 111111
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC---ceeEEEecCCccchhhhcc---------CC
Q 003363 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLALMVG---------TT 715 (826)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~p~~~~~~~~~---------~~ 715 (826)
.....+|+.++++++.... +..++.|+||||||.+++.++. +|+ +++++|+.+|...+..... ..
T Consensus 187 ~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~~~~~~~~~~~~~~l~~~ 263 (395)
T PLN02652 187 LDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALRVKPAHPIVGAVAPIFSL 263 (395)
T ss_pred HHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECcccccccchHHHHHHHHHHHH
Confidence 1223578888888887652 2357999999999999987664 564 7999999999764321000 00
Q ss_pred CCCCchhhh--hccCc------C-CccC------CCCCChhhHHHHhhcC--cccccCCCCCcEEEEEeCCCCCCCcHHH
Q 003363 716 DIPDWCYVE--SYGSK------G-KDSF------TESPSVEDLTRFHSKS--PISHISKVKTPTIFLLGAQDLRVPVSNG 778 (826)
Q Consensus 716 ~~~~~~~~~--~~~~~------~-~~~~------~~~~~~~~~~~~~~~s--p~~~~~~i~~PvLii~G~~D~~vp~~~~ 778 (826)
-.+.+.+.. ..+.. . ...+ .+.............. ....+.++++|+|++||++|..+|++++
T Consensus 264 ~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I~vPvLIi~G~~D~vvp~~~a 343 (395)
T PLN02652 264 VAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSVTVPFMVLHGTADRVTDPLAS 343 (395)
T ss_pred hCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCCCCCHHHH
Confidence 000000000 00000 0 0000 0000000000000000 1234678899999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 779 LQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 779 ~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
.++++.+... ..++++||+++|.+..+....++++.+.+||..+++
T Consensus 344 ~~l~~~~~~~--~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~~ 389 (395)
T PLN02652 344 QDLYNEAASR--HKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRLD 389 (395)
T ss_pred HHHHHhcCCC--CceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 9999987542 467788999999987666677899999999998763
|
|
| >PRK10162 acetyl esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-17 Score=175.58 Aligned_cols=221 Identities=14% Similarity=0.152 Sum_probs=154.5
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-ccchHHHHHHHH-CCcEEEEECCCCCCCCchhhhhcCCCCCCcchH
Q 003363 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652 (826)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~~~~~~~la~-~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~ 652 (826)
.+...+|.|.. ...|+||++|||++.... ..+...+..|+. .|+.|+.+|||.++++ .....+
T Consensus 68 ~i~~~~y~P~~----~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~-----------~~p~~~ 132 (318)
T PRK10162 68 QVETRLYYPQP----DSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEA-----------RFPQAI 132 (318)
T ss_pred ceEEEEECCCC----CCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCC-----------CCCCcH
Confidence 58889999852 246999999999876443 345566777776 6999999999986542 123358
Q ss_pred HHHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHhC------CCceeEEEecCCccchhhhccCCCCCCchhh
Q 003363 653 NDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPLCNLALMVGTTDIPDWCYV 723 (826)
Q Consensus 653 ~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~~------p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~ 723 (826)
+|+.++++|+.++ ..+|++||+|+|+|+||.+++.++.+. +..++++++.+|+.+.... +.+.
T Consensus 133 ~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~~~~~------~s~~-- 204 (318)
T PRK10162 133 EEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLRDS------VSRR-- 204 (318)
T ss_pred HHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccCCCCC------hhHH--
Confidence 9999999998764 347899999999999999999988643 3578899999998774211 0000
Q ss_pred hhccCcCCccCCCCCChhhHHHH----h-----hcCccc-----ccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCC
Q 003363 724 ESYGSKGKDSFTESPSVEDLTRF----H-----SKSPIS-----HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG 789 (826)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~----~-----~~sp~~-----~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g 789 (826)
.++.. +.. ...+....+ . ..+|.. .+...-+|++|++|+.|..+ .+++.++++|+++|
T Consensus 205 -~~~~~----~~~-l~~~~~~~~~~~y~~~~~~~~~p~~~p~~~~l~~~lPp~~i~~g~~D~L~--de~~~~~~~L~~aG 276 (318)
T PRK10162 205 -LLGGV----WDG-LTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTRDVPPCFIAGAEFDPLL--DDSRLLYQTLAAHQ 276 (318)
T ss_pred -HhCCC----ccc-cCHHHHHHHHHHhCCCccccCCcccCcchhhhhcCCCCeEEEecCCCcCc--ChHHHHHHHHHHcC
Confidence 00000 000 000111100 0 112221 11122379999999999987 68999999999999
Q ss_pred CCEEEEEeCCCCCCCCCC----CCHHHHHHHHHHHHHHHcC
Q 003363 790 VETKVIVFPNDVHGIERP----QSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 790 ~~~~~~~~p~~~H~~~~~----~~~~~~~~~i~~w~~~~l~ 826 (826)
+++++++++|..|++... +...+.+..+.+||+++++
T Consensus 277 v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 277 QPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred CCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 999999999999997532 2244778899999999875
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=180.69 Aligned_cols=206 Identities=18% Similarity=0.220 Sum_probs=160.2
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (826)
..+.|||||++|+|.+.... +.+++|++|+++++...+
T Consensus 196 ~~p~ws~~~~~~~y~~f~~~----------------------------------------~~~~i~~~~l~~g~~~~i-- 233 (425)
T COG0823 196 LTPAWSPDGKKLAYVSFELG----------------------------------------GCPRIYYLDLNTGKRPVI-- 233 (425)
T ss_pred eccccCcCCCceEEEEEecC----------------------------------------CCceEEEEeccCCcccee--
Confidence 68999999999999854431 227899999999987777
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC
Q 003363 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 370 (826)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 370 (826)
.........+.|||||++ |+|+..+ +...+||.+|+ .++...+|+..
T Consensus 234 ~~~~g~~~~P~fspDG~~----l~f~~~r------------dg~~~iy~~dl-----------------~~~~~~~Lt~~ 280 (425)
T COG0823 234 LNFNGNNGAPAFSPDGSK----LAFSSSR------------DGSPDIYLMDL-----------------DGKNLPRLTNG 280 (425)
T ss_pred eccCCccCCccCCCCCCE----EEEEECC------------CCCccEEEEcC-----------------CCCcceecccC
Confidence 444556778999999999 9999843 34468999999 77778889999
Q ss_pred CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCc
Q 003363 371 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 450 (826)
Q Consensus 371 ~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 450 (826)
.+....|.|||||++|+|.+.+. +..+||++|++++...+++.... +...+.
T Consensus 281 ~gi~~~Ps~spdG~~ivf~Sdr~--------G~p~I~~~~~~g~~~~riT~~~~--------------------~~~~p~ 332 (425)
T COG0823 281 FGINTSPSWSPDGSKIVFTSDRG--------GRPQIYLYDLEGSQVTRLTFSGG--------------------GNSNPV 332 (425)
T ss_pred CccccCccCCCCCCEEEEEeCCC--------CCcceEEECCCCCceeEeeccCC--------------------CCcCcc
Confidence 88888999999999999999885 34589999999988766554331 112678
Q ss_pred cccCCCEEEEEEEeCCeEEEEEEECCCCc-EEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 003363 451 WLSDGCTMLLSSIWGSSQVIISVNVSSGE-LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 451 ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~-~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 521 (826)
|||||++|+|....++...+...|+.++. .+.++.... .....+++++..+++..... .-+.++..++.
T Consensus 333 ~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~-~e~ps~~~ng~~i~~~s~~~-~~~~l~~~s~~ 402 (425)
T COG0823 333 WSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYL-NESPSWAPNGRMIMFSSGQG-GGSVLSLVSLD 402 (425)
T ss_pred CCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccccc-CCCCCcCCCCceEEEeccCC-CCceEEEeecc
Confidence 99999999999866666788888887777 666655443 33467899999999988777 44556666544
|
|
| >COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-17 Score=165.47 Aligned_cols=207 Identities=21% Similarity=0.259 Sum_probs=160.3
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhh----hcCC----
Q 003363 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL----QSLP---- 644 (826)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~----~~~~---- 644 (826)
+.++.+++..|+ ...+.|.||++|+-.+. .......++.|+.+||.|++||+-+..+...... ....
T Consensus 11 ~~~~~~~~a~P~---~~~~~P~VIv~hei~Gl--~~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~~~~~ 85 (236)
T COG0412 11 DGELPAYLARPA---GAGGFPGVIVLHEIFGL--NPHIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVE 85 (236)
T ss_pred CceEeEEEecCC---cCCCCCEEEEEecccCC--chHHHHHHHHHHhCCcEEEechhhccCCCCCcccccHHHHhhhhhc
Confidence 378999999998 44555999999996554 3466778899999999999999754222211111 0000
Q ss_pred CCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhh
Q 003363 645 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 724 (826)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~ 724 (826)
.........|+.+++++|.+++.++.++|+++|+|+||.+++.++.+.| .++++|+..|..-. .
T Consensus 86 ~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~~----------~----- 149 (236)
T COG0412 86 RVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLIA----------D----- 149 (236)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCCC----------C-----
Confidence 0111345789999999999998899999999999999999999999866 78999887663210 0
Q ss_pred hccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCC
Q 003363 725 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804 (826)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 804 (826)
......++++|+|+.+|+.|..+|......+.+++...++.+++.+|+++.|+|
T Consensus 150 --------------------------~~~~~~~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~F 203 (236)
T COG0412 150 --------------------------DTADAPKIKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHGF 203 (236)
T ss_pred --------------------------cccccccccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCcccc
Confidence 001146788999999999999999999999999999998899999999999999
Q ss_pred CCCC----------CHHHHHHHHHHHHHHHcC
Q 003363 805 ERPQ----------SDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 805 ~~~~----------~~~~~~~~i~~w~~~~l~ 826 (826)
..+. ...+.++++++||+++++
T Consensus 204 ~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 204 ANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred ccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 8553 234788999999999874
|
|
| >PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-17 Score=172.81 Aligned_cols=241 Identities=18% Similarity=0.194 Sum_probs=153.0
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcC---
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL--- 643 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~--- 643 (826)
.+.+-+|..++|+++.|++ ..++.|+||.+||.+.. ...+. ....++.+||+|+.+|.||.++...+.....
T Consensus 60 ~f~s~~g~~V~g~l~~P~~--~~~~~Pavv~~hGyg~~--~~~~~-~~~~~a~~G~~vl~~d~rGqg~~~~d~~~~~~~~ 134 (320)
T PF05448_consen 60 SFESFDGSRVYGWLYRPKN--AKGKLPAVVQFHGYGGR--SGDPF-DLLPWAAAGYAVLAMDVRGQGGRSPDYRGSSGGT 134 (320)
T ss_dssp EEEEGGGEEEEEEEEEES---SSSSEEEEEEE--TT----GGGHH-HHHHHHHTT-EEEEE--TTTSSSS-B-SSBSSS-
T ss_pred EEEccCCCEEEEEEEecCC--CCCCcCEEEEecCCCCC--CCCcc-cccccccCCeEEEEecCCCCCCCCCCccccCCCC
Confidence 5666678999999999985 46899999999996544 22222 2345789999999999999774332211100
Q ss_pred -C-----------CC-CCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCc-cchh
Q 003363 644 -P-----------GK-VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL-CNLA 709 (826)
Q Consensus 644 -~-----------~~-~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~-~~~~ 709 (826)
. .. +....+.|+..++++|...+.+|++||++.|.|.||.+++.+++..+ +++++++..|. +|+.
T Consensus 135 ~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~~~~~vP~l~d~~ 213 (320)
T PF05448_consen 135 LKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKAAAADVPFLCDFR 213 (320)
T ss_dssp SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SEEEEESESSSSHH
T ss_pred CccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccEEEecCCCccchh
Confidence 0 00 01123589999999999999999999999999999999999999864 69999888884 4444
Q ss_pred hhccCCC-CCCchhhhhccCcCCccCCCCC--ChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHH
Q 003363 710 LMVGTTD-IPDWCYVESYGSKGKDSFTESP--SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALR 786 (826)
Q Consensus 710 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~ 786 (826)
....... ...|.....+-. .....+ ..+..+.+...+....++.|++|+|+..|-.|..||+......|+++.
T Consensus 214 ~~~~~~~~~~~y~~~~~~~~----~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~gl~D~~cPP~t~fA~yN~i~ 289 (320)
T PF05448_consen 214 RALELRADEGPYPEIRRYFR----WRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSVGLQDPVCPPSTQFAAYNAIP 289 (320)
T ss_dssp HHHHHT--STTTHHHHHHHH----HHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEEETT-SSS-HHHHHHHHCC--
T ss_pred hhhhcCCccccHHHHHHHHh----ccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEEecCCCCCCchhHHHHHhccC
Confidence 3322111 111111000000 000011 122344556677888899999999999999999999999999999886
Q ss_pred hCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 787 EKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 787 ~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
. +.++.+||..+|... ......+.++||.+|
T Consensus 290 ~---~K~l~vyp~~~He~~----~~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 290 G---PKELVVYPEYGHEYG----PEFQEDKQLNFLKEH 320 (320)
T ss_dssp S---SEEEEEETT--SSTT----HHHHHHHHHHHHHH-
T ss_pred C---CeeEEeccCcCCCch----hhHHHHHHHHHHhcC
Confidence 5 589999999999765 222367899999886
|
Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F .... |
| >COG2267 PldB Lysophospholipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.7e-17 Score=168.97 Aligned_cols=245 Identities=15% Similarity=0.155 Sum_probs=155.2
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCC
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~ 646 (826)
.+...+|..+....+.+. ..+..+||++||.... ...|...+..|..+||.|+++|.||+|.+.+ .....-.
T Consensus 13 ~~~~~d~~~~~~~~~~~~----~~~~g~Vvl~HG~~Eh--~~ry~~la~~l~~~G~~V~~~D~RGhG~S~r--~~rg~~~ 84 (298)
T COG2267 13 YFTGADGTRLRYRTWAAP----EPPKGVVVLVHGLGEH--SGRYEELADDLAARGFDVYALDLRGHGRSPR--GQRGHVD 84 (298)
T ss_pred eeecCCCceEEEEeecCC----CCCCcEEEEecCchHH--HHHHHHHHHHHHhCCCEEEEecCCCCCCCCC--CCcCCch
Confidence 344556778887777765 2233899999997654 4567778999999999999999999655432 1111111
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh--hc-c---------C
Q 003363 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--MV-G---------T 714 (826)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~--~~-~---------~ 714 (826)
....-..|+...++.+... ....+++|+||||||.+++.++.+++..+.++|+.+|.+.+.. .. . .
T Consensus 85 ~f~~~~~dl~~~~~~~~~~--~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~~~~~~~~~~~ 162 (298)
T COG2267 85 SFADYVDDLDAFVETIAEP--DPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLILARLALKLLG 162 (298)
T ss_pred hHHHHHHHHHHHHHHHhcc--CCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHHHHHHhccccc
Confidence 0111133444444444332 2246899999999999999999999999999999999887652 00 0 0
Q ss_pred CCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCc-----------------------ccccCCCCCcEEEEEeCCCC
Q 003363 715 TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP-----------------------ISHISKVKTPTIFLLGAQDL 771 (826)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-----------------------~~~~~~i~~PvLii~G~~D~ 771 (826)
...+.+.+.. -.......-......+..+. ...+| .....++++|+||++|++|.
T Consensus 163 ~~~p~~~~~~-~~~~~~~~~~~sr~~~~~~~-~~~dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~PvLll~g~~D~ 240 (298)
T COG2267 163 RIRPKLPVDS-NLLEGVLTDDLSRDPAEVAA-YEADPLIGVGGPVSRWVDLALLAGRVPALRDAPAIALPVLLLQGGDDR 240 (298)
T ss_pred ccccccccCc-ccccCcCcchhhcCHHHHHH-HhcCCccccCCccHHHHHHHHHhhcccchhccccccCCEEEEecCCCc
Confidence 0000110000 00000000000001111111 11122 12245678999999999999
Q ss_pred CCC-cHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCH--HHHHHHHHHHHHHHc
Q 003363 772 RVP-VSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD--FESFLNIGLWFKKYC 825 (826)
Q Consensus 772 ~vp-~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~--~~~~~~i~~w~~~~l 825 (826)
+++ .+...++++++... .+++++|+|+.|.+..+... .++++.+.+|+.+++
T Consensus 241 vv~~~~~~~~~~~~~~~~--~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~ 295 (298)
T COG2267 241 VVDNVEGLARFFERAGSP--DKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEAL 295 (298)
T ss_pred cccCcHHHHHHHHhcCCC--CceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhc
Confidence 998 67766666665442 37899999999998877777 899999999999876
|
|
| >PRK11460 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-16 Score=160.60 Aligned_cols=186 Identities=13% Similarity=0.145 Sum_probs=134.6
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCC----CCchhhhhcCCCCCCcch-------HHHHHH
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSL----GFGEEALQSLPGKVGSQD-------VNDVLT 657 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~----g~G~~~~~~~~~~~~~~~-------~~D~~~ 657 (826)
....|+||++||.+.+ ...+...+..|+..++.+..+.++|.. +.|..|... ........ ...+.+
T Consensus 13 ~~~~~~vIlLHG~G~~--~~~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~-~~~~~~~~~~~~~~~~~~l~~ 89 (232)
T PRK11460 13 KPAQQLLLLFHGVGDN--PVAMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSV-QGITEDNRQARVAAIMPTFIE 89 (232)
T ss_pred CCCCcEEEEEeCCCCC--hHHHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccC-CCCCccchHHHHHHHHHHHHH
Confidence 4567999999996655 446777888888877666666666632 113333211 00011111 233445
Q ss_pred HHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCC
Q 003363 658 AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTES 737 (826)
Q Consensus 658 ~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (826)
.++++.++..++.++|+|+|+|+||.+++.++.++|+.+.++++.++... . .
T Consensus 90 ~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~-----------~-----------------~ 141 (232)
T PRK11460 90 TVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYA-----------S-----------------L 141 (232)
T ss_pred HHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccccc-----------c-----------------c
Confidence 66666666668889999999999999999999888988888776655211 0 0
Q ss_pred CChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHH
Q 003363 738 PSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNI 817 (826)
Q Consensus 738 ~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i 817 (826)
+. ....++|+|++||++|++||++.+.++++.|++.|.++++++||+++|.+. .+....+
T Consensus 142 ~~---------------~~~~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~-----~~~~~~~ 201 (232)
T PRK11460 142 PE---------------TAPTATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAID-----PRLMQFA 201 (232)
T ss_pred cc---------------cccCCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCC-----HHHHHHH
Confidence 00 011368999999999999999999999999999999999999999999985 3667788
Q ss_pred HHHHHHHc
Q 003363 818 GLWFKKYC 825 (826)
Q Consensus 818 ~~w~~~~l 825 (826)
.+||.+.|
T Consensus 202 ~~~l~~~l 209 (232)
T PRK11460 202 LDRLRYTV 209 (232)
T ss_pred HHHHHHHc
Confidence 88888776
|
|
| >KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.3e-17 Score=156.27 Aligned_cols=209 Identities=16% Similarity=0.208 Sum_probs=149.8
Q ss_pred ccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHH-HCCcEEEEECCCCCCCCchhhhhcCCCCC
Q 003363 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (826)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la-~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~ 647 (826)
.+..|..+.+..+.|+ ....++|+|.||..... .........|. ..++.|+.+||+|.+.++.. +.+
T Consensus 41 ~t~rgn~~~~~y~~~~----~~~~~~lly~hGNa~Dl--gq~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~-----psE- 108 (258)
T KOG1552|consen 41 KTSRGNEIVCMYVRPP----EAAHPTLLYSHGNAADL--GQMVELFKELSIFLNCNVVSYDYSGYGRSSGK-----PSE- 108 (258)
T ss_pred ecCCCCEEEEEEEcCc----cccceEEEEcCCcccch--HHHHHHHHHHhhcccceEEEEecccccccCCC-----ccc-
Confidence 3445667777888775 23569999999963322 12222222332 35899999999995544332 112
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC-CCCCCchhhhhc
Q 003363 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-TDIPDWCYVESY 726 (826)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~-~~~~~~~~~~~~ 726 (826)
.+..+|+.++.+||.+... ..++|+|+|+|+|...+..+|++.| ..++|+.+|+.+....... .....|+
T Consensus 109 -~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv~~~~~~~~~~~----- 179 (258)
T KOG1552|consen 109 -RNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRVAFPDTKTTYCF----- 179 (258)
T ss_pred -ccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhhhccCcceEEee-----
Confidence 2468999999999999876 7899999999999999999999988 9999999999886544322 1111110
Q ss_pred cCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCC
Q 003363 727 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 806 (826)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~ 806 (826)
..+.-+..+..+++|+|++||+.|++++..++.+++++.++. ++-.+..|+||....
T Consensus 180 --------------------d~f~~i~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~---~epl~v~g~gH~~~~ 236 (258)
T KOG1552|consen 180 --------------------DAFPNIEKISKITCPVLIIHGTDDEVVDFSHGKALYERCKEK---VEPLWVKGAGHNDIE 236 (258)
T ss_pred --------------------ccccccCcceeccCCEEEEecccCceecccccHHHHHhcccc---CCCcEEecCCCcccc
Confidence 011115667788999999999999999999999999999874 788888999997543
Q ss_pred CCCHHHHHHHHHHHHHH
Q 003363 807 PQSDFESFLNIGLWFKK 823 (826)
Q Consensus 807 ~~~~~~~~~~i~~w~~~ 823 (826)
-. .++.+.+..|+..
T Consensus 237 ~~--~~yi~~l~~f~~~ 251 (258)
T KOG1552|consen 237 LY--PEYIEHLRRFISS 251 (258)
T ss_pred cC--HHHHHHHHHHHHH
Confidence 22 2566667766654
|
|
| >PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.2e-16 Score=181.16 Aligned_cols=208 Identities=16% Similarity=0.212 Sum_probs=148.9
Q ss_pred HHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcC--CCC------------CCcEEEEEe
Q 003363 613 SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG--LAN------------PSKVTVVGG 678 (826)
Q Consensus 613 ~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~--~~d------------~~rv~l~G~ 678 (826)
..++|+.+||+|+++|.||.++++..+ ...+..+.+|..++|+|+..+. +.| ..+|+++|.
T Consensus 271 ~~~~~~~rGYaVV~~D~RGtg~SeG~~-----~~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~ 345 (767)
T PRK05371 271 LNDYFLPRGFAVVYVSGIGTRGSDGCP-----TTGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGK 345 (767)
T ss_pred HHHHHHhCCeEEEEEcCCCCCCCCCcC-----ccCCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEE
Confidence 557899999999999999987765543 2344668999999999998542 123 479999999
Q ss_pred cchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCC---C-Cch------hhhhccCc----C-----Ccc------
Q 003363 679 SHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI---P-DWC------YVESYGSK----G-----KDS------ 733 (826)
Q Consensus 679 S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~---~-~~~------~~~~~~~~----~-----~~~------ 733 (826)
||||++++.+|+..|+.++++|..+++.++..++..... + .|. ........ . ...
T Consensus 346 SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~ 425 (767)
T PRK05371 346 SYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKLLA 425 (767)
T ss_pred cHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHHHh
Confidence 999999999999889999999999999877543311100 0 110 00000000 0 000
Q ss_pred -CCC---CCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCC
Q 003363 734 -FTE---SPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQS 809 (826)
Q Consensus 734 -~~~---~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~ 809 (826)
+.. .......+.|...+++.+++++++|+|++||..|.+|++.++.+++++|++++++.++++.++ +|.......
T Consensus 426 ~~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~g-~H~~~~~~~ 504 (767)
T PRK05371 426 ELTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLHQG-GHVYPNNWQ 504 (767)
T ss_pred hhhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEeCC-CccCCCchh
Confidence 000 000011223455677788899999999999999999999999999999999999999877755 686655555
Q ss_pred HHHHHHHHHHHHHHHcC
Q 003363 810 DFESFLNIGLWFKKYCK 826 (826)
Q Consensus 810 ~~~~~~~i~~w~~~~l~ 826 (826)
..++.+.+.+||+++|+
T Consensus 505 ~~d~~e~~~~Wfd~~Lk 521 (767)
T PRK05371 505 SIDFRDTMNAWFTHKLL 521 (767)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 66788999999999985
|
|
| >TIGR01840 esterase_phb esterase, PHB depolymerase family | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=159.56 Aligned_cols=191 Identities=18% Similarity=0.144 Sum_probs=124.9
Q ss_pred EEEecCCCCCCCCCcEEEEEcCCCCCCCCccch---HHHHHHHHCCcEEEEECCCCCCCCchhh--hhcCCCCCCcchHH
Q 003363 579 IFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVNYRGSLGFGEEA--LQSLPGKVGSQDVN 653 (826)
Q Consensus 579 ~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~---~~~~~la~~G~~Vl~~d~rG~~g~G~~~--~~~~~~~~~~~~~~ 653 (826)
++|.|++. .+++|+||++||++.... .+. .....+.+.||.|++||++|.++.+..+ ........+..+..
T Consensus 2 ~ly~P~~~--~~~~P~vv~lHG~~~~~~--~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~ 77 (212)
T TIGR01840 2 YVYVPAGL--TGPRALVLALHGCGQTAS--AYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVE 77 (212)
T ss_pred EEEcCCCC--CCCCCEEEEeCCCCCCHH--HHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccHH
Confidence 68889863 467899999999775532 222 2344556789999999999965433221 11111122334678
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCcc
Q 003363 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDS 733 (826)
Q Consensus 654 D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (826)
|+...++++.++..+|++||+|+|+|+||++++.++.++|++|++++..++..-.... . . ......
T Consensus 78 ~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~----~---~--~~~~~~----- 143 (212)
T TIGR01840 78 SLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEAS----S---S--ISATPQ----- 143 (212)
T ss_pred HHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccc----c---c--hhhHhh-----
Confidence 8999999999887799999999999999999999999999999999888765311000 0 0 000000
Q ss_pred CCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhC
Q 003363 734 FTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 788 (826)
Q Consensus 734 ~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~ 788 (826)
+...........+.... .....+..+|++|+||++|.+||++.+++++++|++.
T Consensus 144 ~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 144 MCTAATAASVCRLVRGM-QSEYNGPTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred cCCCCCHHHHHHHHhcc-CCcccCCCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 00001111111111110 1112234456889999999999999999999999875
|
This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi. |
| >PRK00870 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.5e-16 Score=165.79 Aligned_cols=221 Identities=14% Similarity=0.151 Sum_probs=133.7
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
..|.||++||.+.. ...|...+..|++.||.|+++|+|| +|.+.. +........++..+.+..++++ ++.
T Consensus 45 ~~~~lvliHG~~~~--~~~w~~~~~~L~~~gy~vi~~Dl~G---~G~S~~---~~~~~~~~~~~~a~~l~~~l~~--l~~ 114 (302)
T PRK00870 45 DGPPVLLLHGEPSW--SYLYRKMIPILAAAGHRVIAPDLIG---FGRSDK---PTRREDYTYARHVEWMRSWFEQ--LDL 114 (302)
T ss_pred CCCEEEEECCCCCc--hhhHHHHHHHHHhCCCEEEEECCCC---CCCCCC---CCCcccCCHHHHHHHHHHHHHH--cCC
Confidence 35789999997644 5578888888988899999999999 444321 1111123455555555555554 345
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh------h---ccC-CCCCCchhhh----hccC----cCCc
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL------M---VGT-TDIPDWCYVE----SYGS----KGKD 732 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~------~---~~~-~~~~~~~~~~----~~~~----~~~~ 732 (826)
+++.|+|||+||.++..++.++|++++++|+.++...... + ... ...+...... .... ....
T Consensus 115 ~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (302)
T PRK00870 115 TDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTGLPTGDGPMPDAFWAWRAFSQYSPVLPVGRLVNGGTVRDLSDAVRA 194 (302)
T ss_pred CCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCCCCCccccchHHHhhhhcccccCchhhHHHHhhccccccCCHHHHH
Confidence 7899999999999999999999999999998886321100 0 000 0000000000 0000 0000
Q ss_pred cCCCCCChh---h-HHHH---hhcC-----------cccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEE
Q 003363 733 SFTESPSVE---D-LTRF---HSKS-----------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 794 (826)
Q Consensus 733 ~~~~~~~~~---~-~~~~---~~~s-----------p~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 794 (826)
.+......+ . ...+ .... -...+.++++|+|+++|++|..+|... +.+.+.+.+. ..+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~-~~~~~~~~~~-~~~~~ 272 (302)
T PRK00870 195 AYDAPFPDESYKAGARAFPLLVPTSPDDPAVAANRAAWAVLERWDKPFLTAFSDSDPITGGGD-AILQKRIPGA-AGQPH 272 (302)
T ss_pred HhhcccCChhhhcchhhhhhcCCCCCCCcchHHHHHHHHhhhcCCCceEEEecCCCCcccCch-HHHHhhcccc-cccce
Confidence 000000000 0 0000 0000 012356789999999999999999866 6676666542 11347
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 795 IVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 795 ~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
++++++||....... ..+...+.+|++++
T Consensus 273 ~~i~~~gH~~~~e~p-~~~~~~l~~fl~~~ 301 (302)
T PRK00870 273 PTIKGAGHFLQEDSG-EELAEAVLEFIRAT 301 (302)
T ss_pred eeecCCCccchhhCh-HHHHHHHHHHHhcC
Confidence 789999999765444 58889999999875
|
|
| >PRK10985 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-16 Score=166.09 Aligned_cols=225 Identities=14% Similarity=0.115 Sum_probs=139.6
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCC
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (826)
....|+||++||.++..........+..|.++||.|+++|+||+++..... +..+.....+|+..+++++.++.
T Consensus 55 ~~~~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~----~~~~~~~~~~D~~~~i~~l~~~~-- 128 (324)
T PRK10985 55 ARHKPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRL----HRIYHSGETEDARFFLRWLQREF-- 128 (324)
T ss_pred CCCCCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCC----cceECCCchHHHHHHHHHHHHhC--
Confidence 345799999999765532222345778899999999999999965432111 11112234789999999998863
Q ss_pred CCCcEEEEEecchHHHHHHHHHhCCCc--eeEEEecCCccchhhhccCCC-----CCCchhhh-----------hccC--
Q 003363 669 NPSKVTVVGGSHGGFLTTHLIGQAPDK--FVAAAARNPLCNLALMVGTTD-----IPDWCYVE-----------SYGS-- 728 (826)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~a~~~p~~--~~a~v~~~p~~~~~~~~~~~~-----~~~~~~~~-----------~~~~-- 728 (826)
...++.++|||+||.+++.+++++++. +.++|++++..++.......+ .....+.. .+..
T Consensus 129 ~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 208 (324)
T PRK10985 129 GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSYRMEQGFSRVYQRYLLNLLKANAARKLAAYPGTL 208 (324)
T ss_pred CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 346899999999999988888776543 778887777655321100000 00000000 0000
Q ss_pred ------------------cCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCC
Q 003363 729 ------------------KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV 790 (826)
Q Consensus 729 ------------------~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~ 790 (826)
.....+.+. ....+.+...+....+.++++|+|+++|++|+.++++....+.+. ..
T Consensus 209 ~~~~~~~~~~~~~~~fd~~~~~~~~g~--~~~~~~y~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~----~~ 282 (324)
T PRK10985 209 PINLAQLKSVRRLREFDDLITARIHGF--ADAIDYYRQCSALPLLNQIRKPTLIIHAKDDPFMTHEVIPKPESL----PP 282 (324)
T ss_pred cCCHHHHhcCCcHHHHhhhheeccCCC--CCHHHHHHHCChHHHHhCCCCCEEEEecCCCCCCChhhChHHHHh----CC
Confidence 000000010 112233445566667889999999999999999988766554332 23
Q ss_pred CEEEEEeCCCCCCCCCC----CCHHHHHHHHHHHHHHHc
Q 003363 791 ETKVIVFPNDVHGIERP----QSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 791 ~~~~~~~p~~~H~~~~~----~~~~~~~~~i~~w~~~~l 825 (826)
.+++++++++||..... ....-..+.+.+||+..+
T Consensus 283 ~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~~ 321 (324)
T PRK10985 283 NVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTYL 321 (324)
T ss_pred CeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHhh
Confidence 58889999999974422 222345567888997764
|
|
| >KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=147.97 Aligned_cols=225 Identities=20% Similarity=0.288 Sum_probs=160.3
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCC
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~ 646 (826)
+....|..++++|+..- ....|+++++|+..+..+. ......-++.+.+..|++++||| ||.+.. .+.+
T Consensus 58 ~l~T~D~vtL~a~~~~~-----E~S~pTlLyfh~NAGNmGh-r~~i~~~fy~~l~mnv~ivsYRG---YG~S~G--spsE 126 (300)
T KOG4391|consen 58 ELRTRDKVTLDAYLMLS-----ESSRPTLLYFHANAGNMGH-RLPIARVFYVNLKMNVLIVSYRG---YGKSEG--SPSE 126 (300)
T ss_pred EEEcCcceeEeeeeecc-----cCCCceEEEEccCCCcccc-hhhHHHHHHHHcCceEEEEEeec---cccCCC--Cccc
Confidence 55667889999999983 3488999999997665432 12223335678899999999999 555421 1222
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhc
Q 003363 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 726 (826)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 726 (826)
-| -.-|..++++|+..++..|..++.++|.|.||..+..+|++..+++.|+++.+.+..+..+.-..-.+ +
T Consensus 127 ~G--L~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~~v~p-------~ 197 (300)
T KOG4391|consen 127 EG--LKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIPLVFP-------F 197 (300)
T ss_pred cc--eeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccchhhhhheecc-------c
Confidence 22 25689999999999999999999999999999999999999999999999998887764432211111 0
Q ss_pred cCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCC
Q 003363 727 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 806 (826)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~ 806 (826)
+. + ..+.+-.... ......+.+.+.|+|++.|..|+.||+.+.+++|+....+ ..++..||++.|.-.-
T Consensus 198 ~~---k---~i~~lc~kn~---~~S~~ki~~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~--~Krl~eFP~gtHNDT~ 266 (300)
T KOG4391|consen 198 PM---K---YIPLLCYKNK---WLSYRKIGQCRMPFLFISGLKDELVPPVMMRQLYELCPSR--TKRLAEFPDGTHNDTW 266 (300)
T ss_pred hh---h---HHHHHHHHhh---hcchhhhccccCceEEeecCccccCCcHHHHHHHHhCchh--hhhheeCCCCccCceE
Confidence 00 0 0000000011 2223345567799999999999999999999999987654 4678899999997543
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 003363 807 PQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 807 ~~~~~~~~~~i~~w~~~~ 824 (826)
... ..++.|.+|+.+.
T Consensus 267 i~d--GYfq~i~dFlaE~ 282 (300)
T KOG4391|consen 267 ICD--GYFQAIEDFLAEV 282 (300)
T ss_pred Eec--cHHHHHHHHHHHh
Confidence 222 4678899998774
|
|
| >TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.9e-16 Score=164.03 Aligned_cols=215 Identities=17% Similarity=0.215 Sum_probs=128.3
Q ss_pred CcEEEEEcCCCCCCCCccch---HHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~---~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (826)
.|.||++||.+... ..|. ..+..+++.||.|+++|+||. |.+..............+|+.++++. +
T Consensus 30 ~~~ivllHG~~~~~--~~~~~~~~~~~~l~~~~~~vi~~D~~G~---G~S~~~~~~~~~~~~~~~~l~~~l~~------l 98 (282)
T TIGR03343 30 GEAVIMLHGGGPGA--GGWSNYYRNIGPFVDAGYRVILKDSPGF---NKSDAVVMDEQRGLVNARAVKGLMDA------L 98 (282)
T ss_pred CCeEEEECCCCCch--hhHHHHHHHHHHHHhCCCEEEEECCCCC---CCCCCCcCcccccchhHHHHHHHHHH------c
Confidence 46799999965442 2333 345567788999999999994 44421110011111123444444443 3
Q ss_pred CCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCC------------CCCchhhhhccCcC-CccCC
Q 003363 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD------------IPDWCYVESYGSKG-KDSFT 735 (826)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~------------~~~~~~~~~~~~~~-~~~~~ 735 (826)
+.+++.++|||+||.+++.++.++|++++++|+.+|............ .+.......+.... .....
T Consensus 99 ~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (282)
T TIGR03343 99 DIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQSL 178 (282)
T ss_pred CCCCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCccc
Confidence 567999999999999999999999999999999887421100000000 00000000000000 00000
Q ss_pred C------------CCChhhHHHHhh---------cCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEE
Q 003363 736 E------------SPSVEDLTRFHS---------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 794 (826)
Q Consensus 736 ~------------~~~~~~~~~~~~---------~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 794 (826)
. .........+.. .+....+.++++|+|+++|++|..++++.+.++++.+++ +++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~~~~~~~~~~~~~~----~~~ 254 (282)
T TIGR03343 179 ITEELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVPLDHGLKLLWNMPD----AQL 254 (282)
T ss_pred CcHHHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhhCCCCEEEEEccCCCcCCchhHHHHHHhCCC----CEE
Confidence 0 000000011110 011234678899999999999999999998888887754 789
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 795 IVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 795 ~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
++++++||....... ..+.+.+.+|++
T Consensus 255 ~~i~~agH~~~~e~p-~~~~~~i~~fl~ 281 (282)
T TIGR03343 255 HVFSRCGHWAQWEHA-DAFNRLVIDFLR 281 (282)
T ss_pred EEeCCCCcCCcccCH-HHHHHHHHHHhh
Confidence 999999998765444 478888999985
|
Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself. |
| >PLN02511 hydrolase | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.9e-16 Score=169.38 Aligned_cols=243 Identities=15% Similarity=0.131 Sum_probs=145.1
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccc-hHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~-~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
..||..+..-.+.+.........|+||++||..++.. ..| ...+..+.++||.|+++|+||+++.... .+..+.
T Consensus 78 ~~DG~~~~ldw~~~~~~~~~~~~p~vvllHG~~g~s~-~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~----~~~~~~ 152 (388)
T PLN02511 78 TPDGGAVALDWVSGDDRALPADAPVLILLPGLTGGSD-DSYVRHMLLRARSKGWRVVVFNSRGCADSPVT----TPQFYS 152 (388)
T ss_pred CCCCCEEEEEecCcccccCCCCCCEEEEECCCCCCCC-CHHHHHHHHHHHHCCCEEEEEecCCCCCCCCC----CcCEEc
Confidence 3455556543333221112345689999999765532 234 3455667789999999999996543211 111122
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCc--eeEEEecCCccchhhh----ccCC-CCCCch
Q 003363 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK--FVAAAARNPLCNLALM----VGTT-DIPDWC 721 (826)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~--~~a~v~~~p~~~~~~~----~~~~-~~~~~~ 721 (826)
....+|+.++++++..+. ...++.++|||+||.+++.++.++++. +.+++++++..++... .... ......
T Consensus 153 ~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~~~~~~~~~~~~y~~~ 230 (388)
T PLN02511 153 ASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIADEDFHKGFNNVYDKA 230 (388)
T ss_pred CCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHHHHHHhccHHHHHHHH
Confidence 344789999999998763 346899999999999999999999986 7777766665443110 0000 000000
Q ss_pred hh-------h----hcc------------C-cC--------CccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCC
Q 003363 722 YV-------E----SYG------------S-KG--------KDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 769 (826)
Q Consensus 722 ~~-------~----~~~------------~-~~--------~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~ 769 (826)
+. . .+. . .. .....+.. ...+.|...++...+.+|++|+|+|+|++
T Consensus 231 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~--~~~~yy~~~s~~~~L~~I~vPtLiI~g~d 308 (388)
T PLN02511 231 LAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFK--SVDAYYSNSSSSDSIKHVRVPLLCIQAAN 308 (388)
T ss_pred HHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCC--CHHHHHHHcCchhhhccCCCCeEEEEcCC
Confidence 00 0 000 0 00 00000111 11122345667778899999999999999
Q ss_pred CCCCCcHHHH-HHHHHHHhCCCCEEEEEeCCCCCCCCCCCCH-----HHHHHHHHHHHHHHc
Q 003363 770 DLRVPVSNGL-QYARALREKGVETKVIVFPNDVHGIERPQSD-----FESFLNIGLWFKKYC 825 (826)
Q Consensus 770 D~~vp~~~~~-~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~-----~~~~~~i~~w~~~~l 825 (826)
|+++|..... .+.+ ....+++++++++||....+... ....+.+.+||+...
T Consensus 309 Dpi~p~~~~~~~~~~----~~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~~~ 366 (388)
T PLN02511 309 DPIAPARGIPREDIK----ANPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEALE 366 (388)
T ss_pred CCcCCcccCcHhHHh----cCCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHHHH
Confidence 9999876542 2222 23458999999999975543321 124677888887653
|
|
| >COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-16 Score=150.94 Aligned_cols=241 Identities=16% Similarity=0.216 Sum_probs=160.3
Q ss_pred eeeeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchh----hh
Q 003363 565 SANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEE----AL 640 (826)
Q Consensus 565 ~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~----~~ 640 (826)
..+++.-+|..++||++.|+. ..++.|+||..||..+..+ .+ ...-.++..||+|+.+|.||.+++..+ ..
T Consensus 58 dvTf~g~~g~rI~gwlvlP~~--~~~~~P~vV~fhGY~g~~g--~~-~~~l~wa~~Gyavf~MdvRGQg~~~~dt~~~p~ 132 (321)
T COG3458 58 DVTFTGYGGARIKGWLVLPRH--EKGKLPAVVQFHGYGGRGG--EW-HDMLHWAVAGYAVFVMDVRGQGSSSQDTADPPG 132 (321)
T ss_pred EEEEeccCCceEEEEEEeecc--cCCccceEEEEeeccCCCC--Cc-cccccccccceeEEEEecccCCCccccCCCCCC
Confidence 347888889999999999984 4489999999999554432 11 223456789999999999997766321 11
Q ss_pred h-cCCCC------------CCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccc
Q 003363 641 Q-SLPGK------------VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (826)
Q Consensus 641 ~-~~~~~------------~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~ 707 (826)
. ..++. +......|+..+++-+.....+|.+||++.|.|.||.+++.+++.. .+++++++..|...
T Consensus 133 ~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~-~rik~~~~~~Pfl~ 211 (321)
T COG3458 133 GPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALD-PRIKAVVADYPFLS 211 (321)
T ss_pred CCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcC-hhhhcccccccccc
Confidence 1 11111 1112367899999999999899999999999999999999888865 58999999999653
Q ss_pred -hhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHH
Q 003363 708 -LALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALR 786 (826)
Q Consensus 708 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~ 786 (826)
............+.....|- ++ ...+..+..+.+...+....+..++.|+|+..|-.|++||+.....+|+++.
T Consensus 212 df~r~i~~~~~~~ydei~~y~----k~-h~~~e~~v~~TL~yfD~~n~A~RiK~pvL~svgL~D~vcpPstqFA~yN~l~ 286 (321)
T COG3458 212 DFPRAIELATEGPYDEIQTYF----KR-HDPKEAEVFETLSYFDIVNLAARIKVPVLMSVGLMDPVCPPSTQFAAYNALT 286 (321)
T ss_pred cchhheeecccCcHHHHHHHH----Hh-cCchHHHHHHHHhhhhhhhHHHhhccceEEeecccCCCCCChhhHHHhhccc
Confidence 21111111000000000000 00 0111122233444455566778899999999999999999999999999987
Q ss_pred hCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 787 EKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 787 ~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
. +.++.+||.-+|.-... -..+.++.|+..
T Consensus 287 ~---~K~i~iy~~~aHe~~p~----~~~~~~~~~l~~ 316 (321)
T COG3458 287 T---SKTIEIYPYFAHEGGPG----FQSRQQVHFLKI 316 (321)
T ss_pred C---CceEEEeeccccccCcc----hhHHHHHHHHHh
Confidence 5 36777888888964421 112345666643
|
|
| >COG0657 Aes Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-16 Score=166.81 Aligned_cols=232 Identities=21% Similarity=0.286 Sum_probs=157.0
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch--HHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcch
Q 003363 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS--KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~--~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~ 651 (826)
..+...+|.| ........|+||++|||++........ .....++..|+.|+.+|||..+++ .....
T Consensus 62 ~~~~~~~y~p-~~~~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~-----------~~p~~ 129 (312)
T COG0657 62 DGVPVRVYRP-DRKAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH-----------PFPAA 129 (312)
T ss_pred CceeEEEECC-CCCCCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC-----------CCCch
Confidence 3366788888 223556789999999999876554333 345566789999999999997653 33446
Q ss_pred HHHHHHHHHHHHHcC---CCCCCcEEEEEecchHHHHHHHHHhCCC----ceeEEEecCCccchhhhccCCCCCCchhhh
Q 003363 652 VNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDWCYVE 724 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~ 724 (826)
++|+.++++|+.++. .+|+++|+++|+|.||.+++.++....+ ..++.++++|..+... . ......+....
T Consensus 130 ~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~-~-~~~~~~~~~~~ 207 (312)
T COG0657 130 LEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS-S-AASLPGYGEAD 207 (312)
T ss_pred HHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc-c-ccchhhcCCcc
Confidence 899999999999873 4899999999999999999998875443 5788999999988664 1 11110000000
Q ss_pred hccCc-----CCccCCCCCChhhHHHHhhcCcccc--cCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEe
Q 003363 725 SYGSK-----GKDSFTESPSVEDLTRFHSKSPISH--ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 797 (826)
Q Consensus 725 ~~~~~-----~~~~~~~~~~~~~~~~~~~~sp~~~--~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 797 (826)
.+... ....+.... .+. .....+|+.. +.. -+|+++++|+.|...+ +++.+.++|+++|+++++..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~--~~~-~~p~~spl~~~~~~~-lPP~~i~~a~~D~l~~--~~~~~a~~L~~agv~~~~~~~ 281 (312)
T COG0657 208 LLDAAAILAWFADLYLGAA--PDR-EDPEASPLASDDLSG-LPPTLIQTAEFDPLRD--EGEAYAERLRAAGVPVELRVY 281 (312)
T ss_pred ccCHHHHHHHHHHHhCcCc--ccc-CCCccCccccccccC-CCCEEEEecCCCcchh--HHHHHHHHHHHcCCeEEEEEe
Confidence 00000 000000000 000 0012334332 233 4789999999999985 999999999999999999999
Q ss_pred CCCCCCCCCCC--CHHHHHHHHHHHHHHHc
Q 003363 798 PNDVHGIERPQ--SDFESFLNIGLWFKKYC 825 (826)
Q Consensus 798 p~~~H~~~~~~--~~~~~~~~i~~w~~~~l 825 (826)
++..|.+.... ...+.+..+..|+++.+
T Consensus 282 ~g~~H~f~~~~~~~a~~~~~~~~~~l~~~~ 311 (312)
T COG0657 282 PGMIHGFDLLTGPEARSALRQIAAFLRAAL 311 (312)
T ss_pred CCcceeccccCcHHHHHHHHHHHHHHHHhc
Confidence 99999884322 23455677888887544
|
|
| >PLN02824 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.7e-16 Score=164.42 Aligned_cols=221 Identities=17% Similarity=0.140 Sum_probs=133.9
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCc
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 672 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 672 (826)
|.||++||.+.+ ...|...+..|+.. |.|+++|+||.|.+......... ......++++...+..+++.- ..++
T Consensus 30 ~~vlllHG~~~~--~~~w~~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~~~~-~~~~~~~~~~a~~l~~~l~~l--~~~~ 103 (294)
T PLN02824 30 PALVLVHGFGGN--ADHWRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPRSAP-PNSFYTFETWGEQLNDFCSDV--VGDP 103 (294)
T ss_pred CeEEEECCCCCC--hhHHHHHHHHHHhC-CeEEEEcCCCCCCCCCCcccccc-ccccCCHHHHHHHHHHHHHHh--cCCC
Confidence 789999997665 45788888888876 69999999995443211000000 011234666666666555542 3478
Q ss_pred EEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCC----------------CCCchhhh------------
Q 003363 673 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD----------------IPDWCYVE------------ 724 (826)
Q Consensus 673 v~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~----------------~~~~~~~~------------ 724 (826)
+.|+|||+||.+++.++.++|++++++|+++|............ .....+..
T Consensus 104 ~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (294)
T PLN02824 104 AFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETAVGKAFFKSVATPETVKNIL 183 (294)
T ss_pred eEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchhHHHHHHHhhcCHHHHHHHH
Confidence 99999999999999999999999999999987431100000000 00000000
Q ss_pred --hccCc-C-----CccCC---CCCC-hhhHHHHhhcC----cccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhC
Q 003363 725 --SYGSK-G-----KDSFT---ESPS-VEDLTRFHSKS----PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 788 (826)
Q Consensus 725 --~~~~~-~-----~~~~~---~~~~-~~~~~~~~~~s----p~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~ 788 (826)
.+... . ...+. ..+. ......+.... ....+.++++|+|+++|++|..+|.+.++.+.+.+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~~--- 260 (294)
T PLN02824 184 CQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEKDPWEPVELGRAYANFD--- 260 (294)
T ss_pred HHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEecCCCCCChHHHHHHHhcC---
Confidence 00000 0 00000 0000 00000111111 12346788999999999999999998876654433
Q ss_pred CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 789 GVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 789 g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
...++++++++||....+. ..++...+.+|++++
T Consensus 261 -~~~~~~~i~~~gH~~~~e~-p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 261 -AVEDFIVLPGVGHCPQDEA-PELVNPLIESFVARH 294 (294)
T ss_pred -CccceEEeCCCCCChhhhC-HHHHHHHHHHHHhcC
Confidence 2368899999999876544 447889999999864
|
|
| >TIGR01607 PST-A Plasmodium subtelomeric family (PST-A) | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-15 Score=161.09 Aligned_cols=244 Identities=14% Similarity=0.155 Sum_probs=145.4
Q ss_pred ccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc--------------------c---c-hHHHHHHHHCCcEE
Q 003363 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--------------------S---Y-SKSLAFLSSVGYSL 624 (826)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~--------------------~---~-~~~~~~la~~G~~V 624 (826)
.+.+|..+....+.|+ .+..+|+++||........ . | ...+..|+++||.|
T Consensus 3 ~~~~g~~l~~~~~~~~-----~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~~V 77 (332)
T TIGR01607 3 RNKDGLLLKTYSWIVK-----NAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYSV 77 (332)
T ss_pred cCCCCCeEEEeeeecc-----CCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCCcE
Confidence 3456778888888774 3567999999944332111 1 1 35688999999999
Q ss_pred EEECCCCCCCCchhhhhcCCCCCC--cchHHHHHHHHHHHHHc------------------CCCCCCcEEEEEecchHHH
Q 003363 625 LIVNYRGSLGFGEEALQSLPGKVG--SQDVNDVLTAIDHVIDM------------------GLANPSKVTVVGGSHGGFL 684 (826)
Q Consensus 625 l~~d~rG~~g~G~~~~~~~~~~~~--~~~~~D~~~~i~~l~~~------------------~~~d~~rv~l~G~S~GG~~ 684 (826)
+++|.||.|...... ...+... ..-++|+...++.+.+. .+-+..++.|+||||||.+
T Consensus 78 ~~~D~rGHG~S~~~~--~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i 155 (332)
T TIGR01607 78 YGLDLQGHGESDGLQ--NLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNI 155 (332)
T ss_pred EEecccccCCCcccc--ccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHH
Confidence 999999965432110 0011111 11246677777766542 0111357999999999999
Q ss_pred HHHHHHhCCC--------ceeEEEecCCccchhhhc----------------------cCCCCC--Cch-----hhhhcc
Q 003363 685 TTHLIGQAPD--------KFVAAAARNPLCNLALMV----------------------GTTDIP--DWC-----YVESYG 727 (826)
Q Consensus 685 a~~~a~~~p~--------~~~a~v~~~p~~~~~~~~----------------------~~~~~~--~~~-----~~~~~~ 727 (826)
++.++..+++ .++++|+.+|...+.... ...... .+. ..+.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 235 (332)
T TIGR01607 156 ALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPYVNDIIK 235 (332)
T ss_pred HHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChhhhhHHh
Confidence 9988865432 588888888875431100 000000 000 000000
Q ss_pred CcCCccCCCCCChhhHHHHhhcC--cccccCCC--CCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCC
Q 003363 728 SKGKDSFTESPSVEDLTRFHSKS--PISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803 (826)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~s--p~~~~~~i--~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~ 803 (826)
.+.. .+...........+.... ....+.++ ++|+|++||++|..++++.+..+++++.. ..+++.+|++++|.
T Consensus 236 ~Dp~-~~~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~--~~~~l~~~~g~~H~ 312 (332)
T TIGR01607 236 FDKF-RYDGGITFNLASELIKATDTLDCDIDYIPKDIPILFIHSKGDCVCSYEGTVSFYNKLSI--SNKELHTLEDMDHV 312 (332)
T ss_pred cCcc-ccCCcccHHHHHHHHHHHHHHHhhHhhCCCCCCEEEEEeCCCCccCHHHHHHHHHhccC--CCcEEEEECCCCCC
Confidence 0000 000111111111111110 01234445 68999999999999999999888877643 24678899999999
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 003363 804 IERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 804 ~~~~~~~~~~~~~i~~w~~ 822 (826)
+..+....+++..+.+||+
T Consensus 313 i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 313 ITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred CccCCCHHHHHHHHHHHhh
Confidence 9877767789999999986
|
These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii. |
| >TIGR03611 RutD pyrimidine utilization protein D | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.9e-16 Score=158.91 Aligned_cols=216 Identities=16% Similarity=0.254 Sum_probs=133.7
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (826)
.+.|+||++||.+.. ...|...+..|. +||.|+++|+||.|...... . .....++....+..+++. ++
T Consensus 11 ~~~~~iv~lhG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~~----~---~~~~~~~~~~~~~~~i~~--~~ 78 (257)
T TIGR03611 11 ADAPVVVLSSGLGGS--GSYWAPQLDVLT-QRFHVVTYDHRGTGRSPGEL----P---PGYSIAHMADDVLQLLDA--LN 78 (257)
T ss_pred CCCCEEEEEcCCCcc--hhHHHHHHHHHH-hccEEEEEcCCCCCCCCCCC----c---ccCCHHHHHHHHHHHHHH--hC
Confidence 356889999997654 345666666665 57999999999955432211 1 112345555444444444 34
Q ss_pred CCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhc-----------cCCCCCCc-------hhhhhccCcC-
Q 003363 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV-----------GTTDIPDW-------CYVESYGSKG- 730 (826)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~-----------~~~~~~~~-------~~~~~~~~~~- 730 (826)
..++.++|||+||.+++.++.++|+.++++|+.++........ .......+ .+...+....
T Consensus 79 ~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (257)
T TIGR03611 79 IERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPADWISENA 158 (257)
T ss_pred CCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhhhccccHhhccc
Confidence 5789999999999999999999999999999888754321000 00000000 0000000000
Q ss_pred -------CccCCCCCChh----hHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 003363 731 -------KDSFTESPSVE----DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 799 (826)
Q Consensus 731 -------~~~~~~~~~~~----~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~ 799 (826)
..........+ ....+...+....+.++++|+|+++|++|..+|++++.++++.+.+ .+++.+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~~~~~~ 234 (257)
T TIGR03611 159 ARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVPYTQSLRLAAALPN----AQLKLLPY 234 (257)
T ss_pred hhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccCHHHHHHHHHhcCC----ceEEEECC
Confidence 00000000000 0111122233455778899999999999999999999888887654 67889999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHH
Q 003363 800 DVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 800 ~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
+||.+... ...++.+.+.+||+
T Consensus 235 ~gH~~~~~-~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 235 GGHASNVT-DPETFNRALLDFLK 256 (257)
T ss_pred CCCCcccc-CHHHHHHHHHHHhc
Confidence 99987654 44578888888885
|
This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067. |
| >KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.6e-15 Score=149.30 Aligned_cols=224 Identities=18% Similarity=0.254 Sum_probs=141.4
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC
Q 003363 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (826)
..+..|+|+++||-|.. +..|+.+...|+.+||.|+++|+|| ||.+.. |.......+..+...+..+++.-
T Consensus 40 g~~~gP~illlHGfPe~--wyswr~q~~~la~~~~rviA~DlrG---yG~Sd~---P~~~~~Yt~~~l~~di~~lld~L- 110 (322)
T KOG4178|consen 40 GPGDGPIVLLLHGFPES--WYSWRHQIPGLASRGYRVIAPDLRG---YGFSDA---PPHISEYTIDELVGDIVALLDHL- 110 (322)
T ss_pred cCCCCCEEEEEccCCcc--chhhhhhhhhhhhcceEEEecCCCC---CCCCCC---CCCcceeeHHHHHHHHHHHHHHh-
Confidence 45677999999998866 6678889999999999999999999 665532 33434445555555555555442
Q ss_pred CCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh-----ccCCCCCCch---hhhhccCc----------
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-----VGTTDIPDWC---YVESYGSK---------- 729 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~-----~~~~~~~~~~---~~~~~~~~---------- 729 (826)
.-+|+.++||++|+.++..++..+|+++++.|+.+.......+ .......+|. +.+....+
T Consensus 111 -g~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~~~~~f~~~~y~~~fQ~~~~~E~~~s~~~~~~ 189 (322)
T KOG4178|consen 111 -GLKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDSSKAIFGKSYYICLFQEPGKPETELSKDDTEM 189 (322)
T ss_pred -ccceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhhhccccCccceeEeccccCcchhhhccchhHH
Confidence 2589999999999999999999999999999988754431000 0000000000 00000000
Q ss_pred --------CCc--cCCC-----CCC---hhhH-------------------HHHhhcCc--ccccCCCCCcEEEEEeCCC
Q 003363 730 --------GKD--SFTE-----SPS---VEDL-------------------TRFHSKSP--ISHISKVKTPTIFLLGAQD 770 (826)
Q Consensus 730 --------~~~--~~~~-----~~~---~~~~-------------------~~~~~~sp--~~~~~~i~~PvLii~G~~D 770 (826)
... .+.. .+. +++. +++....+ .....++++|++++.|+.|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~a~~~~~~~i~iPv~fi~G~~D 269 (322)
T KOG4178|consen 190 LVKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWEAAPWALAKITIPVLFIWGDLD 269 (322)
T ss_pred hHHhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhCchhccccccccccceEEEEecCc
Confidence 000 0000 000 1111 12222221 2335678899999999999
Q ss_pred CCCCcHHHHHHHHH-HHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 771 LRVPVSNGLQYARA-LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 771 ~~vp~~~~~~~~~~-l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
...++..-.+.+++ +... .+.++++++||....++.. ++.+.++.||++..
T Consensus 270 ~v~~~p~~~~~~rk~vp~l---~~~vv~~~~gH~vqqe~p~-~v~~~i~~f~~~~~ 321 (322)
T KOG4178|consen 270 PVLPYPIFGELYRKDVPRL---TERVVIEGIGHFVQQEKPQ-EVNQAILGFINSFS 321 (322)
T ss_pred ccccchhHHHHHHHhhccc---cceEEecCCcccccccCHH-HHHHHHHHHHHhhc
Confidence 99887633333333 3332 3678899999988766655 89999999999864
|
|
| >TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.5e-15 Score=156.81 Aligned_cols=229 Identities=13% Similarity=0.134 Sum_probs=138.4
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcch
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~ 651 (826)
+|.+++.+... .+...|.||++||.+.. ...|...+..|.+ +|.|+++|+||. |.+... .....
T Consensus 10 ~~~~~~~~~~~-----~~~~~~plvllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G~---G~S~~~-----~~~~~ 73 (276)
T TIGR02240 10 DGQSIRTAVRP-----GKEGLTPLLIFNGIGAN--LELVFPFIEALDP-DLEVIAFDVPGV---GGSSTP-----RHPYR 73 (276)
T ss_pred CCcEEEEEEec-----CCCCCCcEEEEeCCCcc--hHHHHHHHHHhcc-CceEEEECCCCC---CCCCCC-----CCcCc
Confidence 45566654432 11223579999996544 4467777777754 699999999994 444211 11223
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhcc-------CCCCCC---c-
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-------TTDIPD---W- 720 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~-------~~~~~~---~- 720 (826)
.+++.+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.++......... ...... .
T Consensus 74 ~~~~~~~~~~~i~~--l~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (276)
T TIGR02240 74 FPGLAKLAARMLDY--LDYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPRRYIQPS 151 (276)
T ss_pred HHHHHHHHHHHHHH--hCcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCchhhhccc
Confidence 45555555555554 3457899999999999999999999999999999987653210000 000000 0
Q ss_pred ---hh-hhhccCcC------Ccc----CCCCCChh-hHHHH--hhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHH
Q 003363 721 ---CY-VESYGSKG------KDS----FTESPSVE-DLTRF--HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYAR 783 (826)
Q Consensus 721 ---~~-~~~~~~~~------~~~----~~~~~~~~-~~~~~--~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~ 783 (826)
.. ...+.... ... ........ ..... ........+.++++|+|+++|++|..+|+..+.++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~v~~~~~~~l~~ 231 (276)
T TIGR02240 152 HGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQPTLVLAGDDDPIIPLINMRLLAW 231 (276)
T ss_pred cccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCCCEEEEEeCCCCcCCHHHHHHHHH
Confidence 00 00000000 000 00000000 00000 0111224467899999999999999999999988887
Q ss_pred HHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 784 ALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 784 ~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
.+.. .+++++++ ||..... ...++...+.+|+++.
T Consensus 232 ~~~~----~~~~~i~~-gH~~~~e-~p~~~~~~i~~fl~~~ 266 (276)
T TIGR02240 232 RIPN----AELHIIDD-GHLFLIT-RAEAVAPIIMKFLAEE 266 (276)
T ss_pred hCCC----CEEEEEcC-CCchhhc-cHHHHHHHHHHHHHHh
Confidence 7754 57778875 9986654 4458889999999864
|
This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid. |
| >PLN02965 Probable pheophorbidase | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.8e-15 Score=154.48 Aligned_cols=214 Identities=16% Similarity=0.138 Sum_probs=131.0
Q ss_pred EEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC-Cc
Q 003363 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP-SK 672 (826)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~-~r 672 (826)
.||++||.+.. ...|...+..|++.||.|+++|+||.|. +... . . ....++++.+.+..+++. ++. ++
T Consensus 5 ~vvllHG~~~~--~~~w~~~~~~L~~~~~~via~Dl~G~G~---S~~~--~-~-~~~~~~~~a~dl~~~l~~--l~~~~~ 73 (255)
T PLN02965 5 HFVFVHGASHG--AWCWYKLATLLDAAGFKSTCVDLTGAGI---SLTD--S-N-TVSSSDQYNRPLFALLSD--LPPDHK 73 (255)
T ss_pred EEEEECCCCCC--cCcHHHHHHHHhhCCceEEEecCCcCCC---CCCC--c-c-ccCCHHHHHHHHHHHHHh--cCCCCC
Confidence 49999997755 4568888889989999999999999543 3211 0 1 122355555545545444 233 58
Q ss_pred EEEEEecchHHHHHHHHHhCCCceeEEEecCCcc---ch---hhhc--cCCCCCCchhh--hhccCc---------CC-c
Q 003363 673 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC---NL---ALMV--GTTDIPDWCYV--ESYGSK---------GK-D 732 (826)
Q Consensus 673 v~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~---~~---~~~~--~~~~~~~~~~~--~~~~~~---------~~-~ 732 (826)
+.++||||||.+++.++.++|++++++|+.++.. .. .... .......|... ...... .. .
T Consensus 74 ~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (255)
T PLN02965 74 VILVGHSIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKPEFVRH 153 (255)
T ss_pred EEEEecCcchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCcchhhcCHHHHHH
Confidence 9999999999999999999999999999887642 10 0000 00000000000 000000 00 0
Q ss_pred cCCCCCChhhHHHH-hh--cCc----------ccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 003363 733 SFTESPSVEDLTRF-HS--KSP----------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 799 (826)
Q Consensus 733 ~~~~~~~~~~~~~~-~~--~sp----------~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~ 799 (826)
.+......+..... .. ..+ ...+.++++|+|+++|++|..+|+..++.+.+.+.. .+++++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~~~----a~~~~i~~ 229 (255)
T PLN02965 154 YYYNQSPLEDYTLSSKLLRPAPVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFDPVRQDVMVENWPP----AQTYVLED 229 (255)
T ss_pred HHhcCCCHHHHHHHHHhcCCCCCcchhhhhhccchhhcCCCCEEEEEcCCCCCCCHHHHHHHHHhCCc----ceEEEecC
Confidence 00000000100000 00 000 012346899999999999999999988888877765 68899999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 800 DVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 800 ~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+||....++. .++...+.+|++.
T Consensus 230 ~GH~~~~e~p-~~v~~~l~~~~~~ 252 (255)
T PLN02965 230 SDHSAFFSVP-TTLFQYLLQAVSS 252 (255)
T ss_pred CCCchhhcCH-HHHHHHHHHHHHH
Confidence 9998876544 4777788877654
|
|
| >KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.3e-15 Score=155.61 Aligned_cols=232 Identities=19% Similarity=0.255 Sum_probs=158.5
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC---ccchHHHHHH-HHCCcEEEEECCCCCCCCchhhhhcCCCCCCc
Q 003363 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL---SSYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (826)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~---~~~~~~~~~l-a~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~ 649 (826)
..+..++|.|.......+.|+|||+|||++.... ..|......+ .+.+..|+.+|||-.+++ ..+
T Consensus 72 ~~l~vRly~P~~~~~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh-----------~~P 140 (336)
T KOG1515|consen 72 TNLPVRLYRPTSSSSETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPEH-----------PFP 140 (336)
T ss_pred CCeEEEEEcCCCCCcccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCCC-----------CCC
Confidence 3477789999865444789999999999987653 3555566665 678999999999997653 344
Q ss_pred chHHHHHHHHHHHHHc----CCCCCCcEEEEEecchHHHHHHHHHhC------CCceeEEEecCCccchhhhccCC----
Q 003363 650 QDVNDVLTAIDHVIDM----GLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPLCNLALMVGTT---- 715 (826)
Q Consensus 650 ~~~~D~~~~i~~l~~~----~~~d~~rv~l~G~S~GG~~a~~~a~~~------p~~~~a~v~~~p~~~~~~~~~~~---- 715 (826)
...+|..+++.|+.++ ..+|++||+|+|-|.||.+|..++.+. +..+++.|++.|++.........
T Consensus 141 a~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~~~~~e~~~~ 220 (336)
T KOG1515|consen 141 AAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTDRTESEKQQN 220 (336)
T ss_pred ccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCCCCCHHHHHh
Confidence 4689999999999985 458999999999999999999887643 34789999999988654332110
Q ss_pred ----CCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCccc-----ccCCCC-CcEEEEEeCCCCCCCcHHHHHHHHHH
Q 003363 716 ----DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS-----HISKVK-TPTIFLLGAQDLRVPVSNGLQYARAL 785 (826)
Q Consensus 716 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-----~~~~i~-~PvLii~G~~D~~vp~~~~~~~~~~l 785 (826)
+...+...+.+.. .-.|...........+|.. ...-.. +|+|++.++.|... +++..++++|
T Consensus 221 ~~~~~~~~~~~~~~~w~------~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~D~L~--D~~~~Y~~~L 292 (336)
T KOG1515|consen 221 LNGSPELARPKIDKWWR------LLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAGYDVLR--DEGLAYAEKL 292 (336)
T ss_pred hcCCcchhHHHHHHHHH------HhCCCCCCCcCCccccccccccccCccccCCCceEEEEeCchhhh--hhhHHHHHHH
Confidence 0000000000000 0000000000000112222 111222 56999999999877 9999999999
Q ss_pred HhCCCCEEEEEeCCCCCCCCC--C--CCHHHHHHHHHHHHHHH
Q 003363 786 REKGVETKVIVFPNDVHGIER--P--QSDFESFLNIGLWFKKY 824 (826)
Q Consensus 786 ~~~g~~~~~~~~p~~~H~~~~--~--~~~~~~~~~i~~w~~~~ 824 (826)
++.|++++++.++++.|++.. + ....+.+..+.+|+++.
T Consensus 293 kk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 293 KKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred HHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 999999999999999998643 2 24456778888888764
|
|
| >TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=157.01 Aligned_cols=213 Identities=15% Similarity=0.170 Sum_probs=130.1
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
..|+||++||.+.. ...|...+..|. .||.|+++|+||.+. +.. + ......++..+.+..+++. ++.
T Consensus 12 ~~~~li~~hg~~~~--~~~~~~~~~~l~-~~~~v~~~d~~G~G~---s~~---~--~~~~~~~~~~~~~~~~i~~--~~~ 78 (251)
T TIGR02427 12 GAPVLVFINSLGTD--LRMWDPVLPALT-PDFRVLRYDKRGHGL---SDA---P--EGPYSIEDLADDVLALLDH--LGI 78 (251)
T ss_pred CCCeEEEEcCcccc--hhhHHHHHHHhh-cccEEEEecCCCCCC---CCC---C--CCCCCHHHHHHHHHHHHHH--hCC
Confidence 56899999996544 345666666664 689999999999543 311 1 1123456666666666654 345
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh---c---cCCCCCCch-hhh-hccCcCCccCCCCCCh--
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM---V---GTTDIPDWC-YVE-SYGSKGKDSFTESPSV-- 740 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~---~---~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~-- 740 (826)
+++.++|||+||.+++.++.++|++++++++.++....... . ......... ... .........+......
T Consensus 79 ~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (251)
T TIGR02427 79 ERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTPGFREAHPARL 158 (251)
T ss_pred CceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcccccccCChHHH
Confidence 78999999999999999999999999998887764321100 0 000000000 000 0000000000000000
Q ss_pred hhH----------------HHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCC
Q 003363 741 EDL----------------TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804 (826)
Q Consensus 741 ~~~----------------~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 804 (826)
+.. ..+...+....+.++++|+|+++|++|..+|.+....+.+.+.+ .+++++++++|..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~~~~~~~~~~~~~~----~~~~~~~~~gH~~ 234 (251)
T TIGR02427 159 DLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTPPELVREIADLVPG----ARFAEIRGAGHIP 234 (251)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCChHHHHHHHHhCCC----ceEEEECCCCCcc
Confidence 000 01111222344667889999999999999999988877777653 6888999999987
Q ss_pred CCCCCHHHHHHHHHHHH
Q 003363 805 ERPQSDFESFLNIGLWF 821 (826)
Q Consensus 805 ~~~~~~~~~~~~i~~w~ 821 (826)
.... ..++.+.+.+||
T Consensus 235 ~~~~-p~~~~~~i~~fl 250 (251)
T TIGR02427 235 CVEQ-PEAFNAALRDFL 250 (251)
T ss_pred cccC-hHHHHHHHHHHh
Confidence 6544 446777777776
|
Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. |
| >PRK10673 acyl-CoA esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-15 Score=154.81 Aligned_cols=217 Identities=15% Similarity=0.127 Sum_probs=128.1
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC
Q 003363 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (826)
.....|.||++||.+.. ...|...+..|+ .+|.|+.+|+||.| .+.. +.. ..+.+..+.+..+++.
T Consensus 12 ~~~~~~~iv~lhG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G~G---~s~~---~~~---~~~~~~~~d~~~~l~~-- 77 (255)
T PRK10673 12 NPHNNSPIVLVHGLFGS--LDNLGVLARDLV-NDHDIIQVDMRNHG---LSPR---DPV---MNYPAMAQDLLDTLDA-- 77 (255)
T ss_pred CCCCCCCEEEECCCCCc--hhHHHHHHHHHh-hCCeEEEECCCCCC---CCCC---CCC---CCHHHHHHHHHHHHHH--
Confidence 44566889999997655 345666666775 47999999999954 3321 111 2333333333333333
Q ss_pred CCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCcc-chh-----hhc------cCCCCCCchh-hh----hccCcC
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC-NLA-----LMV------GTTDIPDWCY-VE----SYGSKG 730 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~-~~~-----~~~------~~~~~~~~~~-~~----~~~~~~ 730 (826)
+..+++.|+|||+||.+++.++.++|++++++|+.++.. ... .+. .......+.. .. ......
T Consensus 78 l~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (255)
T PRK10673 78 LQIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMRQHLNEEG 157 (255)
T ss_pred cCCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHHHhcCCHH
Confidence 244679999999999999999999999999998864311 100 000 0000000000 00 000000
Q ss_pred -----CccCCCCC----ChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCC
Q 003363 731 -----KDSFTESP----SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDV 801 (826)
Q Consensus 731 -----~~~~~~~~----~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~ 801 (826)
...+.... .......+........+.++++|+|+++|++|..++.+..+.+.+.+. .+++++++++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~g 233 (255)
T PRK10673 158 VIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVTEAYRDDLLAQFP----QARAHVIAGAG 233 (255)
T ss_pred HHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCCHHHHHHHHHhCC----CcEEEEeCCCC
Confidence 00000000 000011111112223456678999999999999999887777766654 37889999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH
Q 003363 802 HGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 802 H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
|...... ...+.+.+.+||.+
T Consensus 234 H~~~~~~-p~~~~~~l~~fl~~ 254 (255)
T PRK10673 234 HWVHAEK-PDAVLRAIRRYLND 254 (255)
T ss_pred CeeeccC-HHHHHHHHHHHHhc
Confidence 9776444 45788999999875
|
|
| >PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-15 Score=140.79 Aligned_cols=145 Identities=21% Similarity=0.372 Sum_probs=112.4
Q ss_pred EEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcE
Q 003363 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 673 (826)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv 673 (826)
+||++||+... ...|...++.|+++||.|+.+|+|+.+.. ....++.++++++.+.. .|.++|
T Consensus 1 ~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~-~~~~~i 63 (145)
T PF12695_consen 1 VVVLLHGWGGS--RRDYQPLAEALAEQGYAVVAFDYPGHGDS--------------DGADAVERVLADIRAGY-PDPDRI 63 (145)
T ss_dssp EEEEECTTTTT--THHHHHHHHHHHHTTEEEEEESCTTSTTS--------------HHSHHHHHHHHHHHHHH-CTCCEE
T ss_pred CEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEecCCCCcc--------------chhHHHHHHHHHHHhhc-CCCCcE
Confidence 58999997764 55688889999999999999999995432 11235555555554432 278999
Q ss_pred EEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCccc
Q 003363 674 TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS 753 (826)
Q Consensus 674 ~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 753 (826)
+++|||+||.+++.++.+. ..++++|+.+|..+ ..
T Consensus 64 ~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~~--------------------------------------------~~ 98 (145)
T PF12695_consen 64 ILIGHSMGGAIAANLAARN-PRVKAVVLLSPYPD--------------------------------------------SE 98 (145)
T ss_dssp EEEEETHHHHHHHHHHHHS-TTESEEEEESESSG--------------------------------------------CH
T ss_pred EEEEEccCcHHHHHHhhhc-cceeEEEEecCccc--------------------------------------------hh
Confidence 9999999999999999987 78999999887211 01
Q ss_pred ccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCC
Q 003363 754 HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803 (826)
Q Consensus 754 ~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~ 803 (826)
.+.+.+.|+|+++|++|..+++++.++++++++ .+.+++++++++|+
T Consensus 99 ~~~~~~~pv~~i~g~~D~~~~~~~~~~~~~~~~---~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 99 DLAKIRIPVLFIHGENDPLVPPEQVRRLYEALP---GPKELYIIPGAGHF 145 (145)
T ss_dssp HHTTTTSEEEEEEETT-SSSHHHHHHHHHHHHC---SSEEEEEETTS-TT
T ss_pred hhhccCCcEEEEEECCCCcCCHHHHHHHHHHcC---CCcEEEEeCCCcCc
Confidence 123455699999999999999999999999987 46899999999995
|
... |
| >PRK03592 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-14 Score=154.31 Aligned_cols=216 Identities=16% Similarity=0.214 Sum_probs=131.1
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.|.||++||.+.+ ...|...+..|++.+ .|+++|+||. |.+.... ......+..+.+..+++. ++.+
T Consensus 27 g~~vvllHG~~~~--~~~w~~~~~~L~~~~-~via~D~~G~---G~S~~~~-----~~~~~~~~a~dl~~ll~~--l~~~ 93 (295)
T PRK03592 27 GDPIVFLHGNPTS--SYLWRNIIPHLAGLG-RCLAPDLIGM---GASDKPD-----IDYTFADHARYLDAWFDA--LGLD 93 (295)
T ss_pred CCEEEEECCCCCC--HHHHHHHHHHHhhCC-EEEEEcCCCC---CCCCCCC-----CCCCHHHHHHHHHHHHHH--hCCC
Confidence 3689999997755 457778888888876 9999999994 4442211 112345555555555554 3447
Q ss_pred cEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh---h----------ccCCCCCCchhh--hhccCcCC-ccCC
Q 003363 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL---M----------VGTTDIPDWCYV--ESYGSKGK-DSFT 735 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~---~----------~~~~~~~~~~~~--~~~~~~~~-~~~~ 735 (826)
++.++|||+||.+++.++.++|++++++|+.++...... + ............ ..+..... ..+.
T Consensus 94 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (295)
T PRK03592 94 DVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPPAVRELFQALRSPGEGEEMVLEENVFIERVLPGSIL 173 (295)
T ss_pred CeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcchhHHHHHHHHhCcccccccccchhhHHhhcccCccc
Confidence 899999999999999999999999999999887432100 0 000000000000 00000000 0000
Q ss_pred CCCChhhHHHHh-----------------hcC--------------cccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHH
Q 003363 736 ESPSVEDLTRFH-----------------SKS--------------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARA 784 (826)
Q Consensus 736 ~~~~~~~~~~~~-----------------~~s--------------p~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~ 784 (826)
.....+....+. ... ....+.++++|+|+|+|++|..+++....++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~ 253 (295)
T PRK03592 174 RPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEEYAQWLATSDVPKLLINAEPGAILTTGAIRDWCRS 253 (295)
T ss_pred ccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhHhHHHhccCCCCeEEEeccCCcccCcHHHHHHHHH
Confidence 000001000000 000 0122467899999999999999966665555544
Q ss_pred HHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 785 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 785 l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
+.. +.++++++++||...... ..++.+.+.+|+++.
T Consensus 254 ~~~---~~~~~~i~~~gH~~~~e~-p~~v~~~i~~fl~~~ 289 (295)
T PRK03592 254 WPN---QLEITVFGAGLHFAQEDS-PEEIGAAIAAWLRRL 289 (295)
T ss_pred hhh---hcceeeccCcchhhhhcC-HHHHHHHHHHHHHHh
Confidence 332 368889999999887544 458899999999875
|
|
| >TIGR00976 /NonD putative hydrolase, CocE/NonD family | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.2e-15 Score=170.56 Aligned_cols=130 Identities=15% Similarity=0.119 Sum_probs=101.9
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--CccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~--~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
.+|..|.+.+|.|++ .++.|+||++||...... ..........|+++||+|+++|+||.++++.... ..+
T Consensus 4 ~DG~~L~~~~~~P~~---~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~-----~~~ 75 (550)
T TIGR00976 4 RDGTRLAIDVYRPAG---GGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFD-----LLG 75 (550)
T ss_pred CCCCEEEEEEEecCC---CCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceE-----ecC
Confidence 467899999999973 458999999998553321 0111224568899999999999999766544321 122
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchh
Q 003363 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709 (826)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~ 709 (826)
....+|+.++++|+.++++.+ .+|+++|+|+||.+++.++..+|+.++++|..++..++.
T Consensus 76 ~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~ 135 (550)
T TIGR00976 76 SDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLY 135 (550)
T ss_pred cccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchh
Confidence 457899999999999987666 699999999999999999999999999999999887754
|
This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases. |
| >TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.4e-15 Score=154.54 Aligned_cols=215 Identities=14% Similarity=0.125 Sum_probs=131.5
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
..|+||++||.+.. ...|......|++ +|.|+++|+||. |.+... ......++++.+.+..+++. .+.
T Consensus 27 ~~~~vv~~hG~~~~--~~~~~~~~~~l~~-~~~vi~~D~~G~---G~S~~~----~~~~~~~~~~~~~l~~~i~~--~~~ 94 (278)
T TIGR03056 27 AGPLLLLLHGTGAS--THSWRDLMPPLAR-SFRVVAPDLPGH---GFTRAP----FRFRFTLPSMAEDLSALCAA--EGL 94 (278)
T ss_pred CCCeEEEEcCCCCC--HHHHHHHHHHHhh-CcEEEeecCCCC---CCCCCc----cccCCCHHHHHHHHHHHHHH--cCC
Confidence 35889999997654 4467777777755 699999999994 433211 11123466666666666655 334
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh-c-----------c-CCCCCCchhhhhccCcCCccC---
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-V-----------G-TTDIPDWCYVESYGSKGKDSF--- 734 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~-~-----------~-~~~~~~~~~~~~~~~~~~~~~--- 734 (826)
+++.|+|||+||.+++.++.++|++++++|+.++......- . . ......+.............+
T Consensus 95 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (278)
T TIGR03056 95 SPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVLACNPFTPPMMSRGAADQQRVERLIRD 174 (278)
T ss_pred CCceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhhhhcccchHHHHhhcccCcchhHHhhc
Confidence 67899999999999999999999999988888765431100 0 0 000000000000000000000
Q ss_pred ----CCCCChh--------------hHHHHhhcC---cccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEE
Q 003363 735 ----TESPSVE--------------DLTRFHSKS---PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 793 (826)
Q Consensus 735 ----~~~~~~~--------------~~~~~~~~s---p~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 793 (826)
....... ......... ....+.++++|+|+++|++|..+|....+.+.+.+.. ++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~vp~~~~~~~~~~~~~----~~ 250 (278)
T TIGR03056 175 TGSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRITIPLHLIAGEEDKAVPPDESKRAATRVPT----AT 250 (278)
T ss_pred cccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccCCCCEEEEEeCCCcccCHHHHHHHHHhccC----Ce
Confidence 0000000 000000000 1234567889999999999999999988887776654 68
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 794 VIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 794 ~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
+++++++||.+.... ..++.+.|.+|++
T Consensus 251 ~~~~~~~gH~~~~e~-p~~~~~~i~~f~~ 278 (278)
T TIGR03056 251 LHVVPGGGHLVHEEQ-ADGVVGLILQAAE 278 (278)
T ss_pred EEEECCCCCcccccC-HHHHHHHHHHHhC
Confidence 899999999876554 4578888888874
|
Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity. |
| >PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-15 Score=153.93 Aligned_cols=190 Identities=24% Similarity=0.370 Sum_probs=123.5
Q ss_pred EEEEcCCCCCCCCcc-chHHHHHHHH-CCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHc---CCCC
Q 003363 595 IVVLHGGPHSVSLSS-YSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM---GLAN 669 (826)
Q Consensus 595 vv~~HGg~~~~~~~~-~~~~~~~la~-~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~~d 669 (826)
||++|||++...... ....+..+++ .|+.|+.+|||-+++ ......++|+.++++|++++ ..+|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~-----------~~~p~~~~D~~~a~~~l~~~~~~~~~d 69 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPE-----------APFPAALEDVKAAYRWLLKNADKLGID 69 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTT-----------SSTTHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeecccccc-----------ccccccccccccceeeecccccccccc
Confidence 799999998765443 3345566664 999999999998543 23345699999999999997 3478
Q ss_pred CCcEEEEEecchHHHHHHHHHhCCC----ceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChh-hHH
Q 003363 670 PSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVE-DLT 744 (826)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 744 (826)
+++|+|+|+|.||.+++.++....+ .++++++.+|+.++... ..+.+........ ..+......+ ...
T Consensus 70 ~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 142 (211)
T PF07859_consen 70 PERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDF----DGPSYDDSNENKD---DPFLPAPKIDWFWK 142 (211)
T ss_dssp EEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTS----SCHHHHHHHHHST---TSSSBHHHHHHHHH
T ss_pred ccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhc----ccccccccccccc---cccccccccccccc
Confidence 9999999999999999998874332 48999999998766100 0000000000000 0000000000 001
Q ss_pred H--------HhhcCcccccCCC--CCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCC
Q 003363 745 R--------FHSKSPISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 805 (826)
Q Consensus 745 ~--------~~~~sp~~~~~~i--~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 805 (826)
. ....+|+.. ..+ -+|++|++|+.|..+ .++..++++|++.|++++++++++.+|.+.
T Consensus 143 ~~~~~~~~~~~~~sp~~~-~~~~~~Pp~~i~~g~~D~l~--~~~~~~~~~L~~~gv~v~~~~~~g~~H~f~ 210 (211)
T PF07859_consen 143 LYLPGSDRDDPLASPLNA-SDLKGLPPTLIIHGEDDVLV--DDSLRFAEKLKKAGVDVELHVYPGMPHGFF 210 (211)
T ss_dssp HHHSTGGTTSTTTSGGGS-SCCTTCHEEEEEEETTSTTH--HHHHHHHHHHHHTT-EEEEEEETTEETTGG
T ss_pred cccccccccccccccccc-cccccCCCeeeeccccccch--HHHHHHHHHHHHCCCCEEEEEECCCeEEee
Confidence 1 113445544 123 378999999999876 789999999999999999999999999864
|
; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A .... |
| >PLN02679 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-14 Score=157.44 Aligned_cols=219 Identities=15% Similarity=0.228 Sum_probs=129.8
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.|.||++||.+.. ...|...+..|++ +|.|+++|+||. |.+.. +.. ....+++..+.+..+++. +..+
T Consensus 88 gp~lvllHG~~~~--~~~w~~~~~~L~~-~~~via~Dl~G~---G~S~~---~~~-~~~~~~~~a~~l~~~l~~--l~~~ 155 (360)
T PLN02679 88 GPPVLLVHGFGAS--IPHWRRNIGVLAK-NYTVYAIDLLGF---GASDK---PPG-FSYTMETWAELILDFLEE--VVQK 155 (360)
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEECCCCC---CCCCC---CCC-ccccHHHHHHHHHHHHHH--hcCC
Confidence 4789999997654 4577777887765 799999999994 44321 111 122344444444444443 2347
Q ss_pred cEEEEEecchHHHHHHHHH-hCCCceeEEEecCCccchhhhccCCC------CC-Cchh---------h----hhcc-Cc
Q 003363 672 KVTVVGGSHGGFLTTHLIG-QAPDKFVAAAARNPLCNLALMVGTTD------IP-DWCY---------V----ESYG-SK 729 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~-~~p~~~~a~v~~~p~~~~~~~~~~~~------~~-~~~~---------~----~~~~-~~ 729 (826)
++.|+|||+||.+++.++. .+|++++++|++++............ .+ .|.+ . .... ..
T Consensus 156 ~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (360)
T PLN02679 156 PTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRGIASALFNRVKQRD 235 (360)
T ss_pred CeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchhhHHHHHHHhcCHH
Confidence 8999999999999988876 47999999999886432110000000 00 0000 0 0000 00
Q ss_pred CC-----ccCCCC--CCh----------------hhHHHHhh----cCcccccCCCCCcEEEEEeCCCCCCCcHHH-HHH
Q 003363 730 GK-----DSFTES--PSV----------------EDLTRFHS----KSPISHISKVKTPTIFLLGAQDLRVPVSNG-LQY 781 (826)
Q Consensus 730 ~~-----~~~~~~--~~~----------------~~~~~~~~----~sp~~~~~~i~~PvLii~G~~D~~vp~~~~-~~~ 781 (826)
.. ..+... ... +....+.. .+....+.++++|+|+++|++|..+|+... .++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~D~~~p~~~~~~~~ 315 (360)
T PLN02679 236 NLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQDPFTPLDGPVGKY 315 (360)
T ss_pred HHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCCCCCcCchhhHHHH
Confidence 00 000000 000 00011111 111234678899999999999999998753 234
Q ss_pred HHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 782 ARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 782 ~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
++.+.+.-.+.++++++++||....+. ..++.+.+.+||++
T Consensus 316 ~~~l~~~ip~~~l~~i~~aGH~~~~E~-Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 316 FSSLPSQLPNVTLYVLEGVGHCPHDDR-PDLVHEKLLPWLAQ 356 (360)
T ss_pred HHhhhccCCceEEEEcCCCCCCccccC-HHHHHHHHHHHHHh
Confidence 455554444689999999999876544 55888999999976
|
|
| >PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-14 Score=160.40 Aligned_cols=236 Identities=15% Similarity=0.164 Sum_probs=139.8
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH-HHHHHH---HCCcEEEEECCCCCCCCchhhhhcCCC
Q 003363 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLS---SVGYSLLIVNYRGSLGFGEEALQSLPG 645 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~-~~~~la---~~G~~Vl~~d~rG~~g~G~~~~~~~~~ 645 (826)
...+..++.....|.+ ....|.||++||.+.. ...|.. .+..|+ +.+|.|+++|+|| +|.+.. +.
T Consensus 182 ~~~~~~l~~~~~gp~~---~~~k~~VVLlHG~~~s--~~~W~~~~~~~L~~~~~~~yrVia~Dl~G---~G~S~~---p~ 250 (481)
T PLN03087 182 SSSNESLFVHVQQPKD---NKAKEDVLFIHGFISS--SAFWTETLFPNFSDAAKSTYRLFAVDLLG---FGRSPK---PA 250 (481)
T ss_pred eeCCeEEEEEEecCCC---CCCCCeEEEECCCCcc--HHHHHHHHHHHHHHHhhCCCEEEEECCCC---CCCCcC---CC
Confidence 3345677777777763 2334789999997655 334543 234444 4799999999999 444321 11
Q ss_pred CCCcchHHHHHHHH-HHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh-------c--cCC
Q 003363 646 KVGSQDVNDVLTAI-DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-------V--GTT 715 (826)
Q Consensus 646 ~~~~~~~~D~~~~i-~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~-------~--~~~ 715 (826)
. ....+++..+.+ +.+++. .+.+++.++||||||.+++.++.++|++++++|+.+|....... . ...
T Consensus 251 ~-~~ytl~~~a~~l~~~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~~~~~~~~~~~~~~~~~~ 327 (481)
T PLN03087 251 D-SLYTLREHLEMIERSVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYYPVPKGVQATQYVMRKVA 327 (481)
T ss_pred C-CcCCHHHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCccccccchhHHHHHHHHhc
Confidence 1 113455555555 345554 34578999999999999999999999999999998864321100 0 000
Q ss_pred CCCCch----------hhhhccCcC----------Ccc----CCCCCChh----------------hHHHHhhcC-----
Q 003363 716 DIPDWC----------YVESYGSKG----------KDS----FTESPSVE----------------DLTRFHSKS----- 750 (826)
Q Consensus 716 ~~~~~~----------~~~~~~~~~----------~~~----~~~~~~~~----------------~~~~~~~~s----- 750 (826)
....|. ..+...... ... +....... ....+....
T Consensus 328 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~~~~l~ 407 (481)
T PLN03087 328 PRRVWPPIAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHNAAWHTLHNIICGSGSKLD 407 (481)
T ss_pred ccccCCccccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccchhhHHHHHHHHhchhhhhh
Confidence 000000 000000000 000 00000000 000000000
Q ss_pred c-c-cccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 751 P-I-SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 751 p-~-~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
. + ....++++|+|+++|++|..+|++.++.+.+.+.. +++++++++||.....+....+...+.+|...
T Consensus 408 ~~l~~l~~~I~vPtLII~Ge~D~ivP~~~~~~la~~iP~----a~l~vI~~aGH~~~v~e~p~~fa~~L~~F~~~ 478 (481)
T PLN03087 408 GYLDHVRDQLKCDVAIFHGGDDELIPVECSYAVKAKVPR----ARVKVIDDKDHITIVVGRQKEFARELEEIWRR 478 (481)
T ss_pred hHHHHHHHhCCCCEEEEEECCCCCCCHHHHHHHHHhCCC----CEEEEeCCCCCcchhhcCHHHHHHHHHHHhhc
Confidence 0 0 11236899999999999999999999888888764 79999999999866444455788888888753
|
|
| >PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively [] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-15 Score=158.37 Aligned_cols=223 Identities=18% Similarity=0.223 Sum_probs=141.6
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH--------HHHHHHHCCcEEEEECCCCCCCCchhhhhcC
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK--------SLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 643 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~--------~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~ 643 (826)
||..|.+.+|.| +....++.|+||..|+............ ....|+++||+|+++|.||.++++..+..
T Consensus 1 DGv~L~adv~~P-~~~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~-- 77 (272)
T PF02129_consen 1 DGVRLAADVYRP-GADGGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDP-- 77 (272)
T ss_dssp TS-EEEEEEEEE---TTSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-T--
T ss_pred CCCEEEEEEEec-CCCCCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCcccc--
Confidence 578899999999 4447899999999998553210000000 11238999999999999998777665531
Q ss_pred CCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh-hcc---CCCC--
Q 003363 644 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-MVG---TTDI-- 717 (826)
Q Consensus 644 ~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~-~~~---~~~~-- 717 (826)
....+.+|..++|+|+.++++.+ .||+++|.|++|+.++.+|+..|..++|++...+..|+.. ... ....
T Consensus 78 ---~~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~~~~~~ 153 (272)
T PF02129_consen 78 ---MSPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGAFRLGF 153 (272)
T ss_dssp ---TSHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTEEBCCH
T ss_pred ---CChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCcccccc
Confidence 16678999999999999997654 7999999999999999999988889999999988877644 111 0011
Q ss_pred -CCchhhh----hccCcCC--------------------ccCCCC-C-------ChhhHHHHhhcCcccccCCCCCcEEE
Q 003363 718 -PDWCYVE----SYGSKGK--------------------DSFTES-P-------SVEDLTRFHSKSPISHISKVKTPTIF 764 (826)
Q Consensus 718 -~~~~~~~----~~~~~~~--------------------~~~~~~-~-------~~~~~~~~~~~sp~~~~~~i~~PvLi 764 (826)
..|.... ....... ...... + .......+.+.++...+.++++|+|+
T Consensus 154 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~vP~l~ 233 (272)
T PF02129_consen 154 FAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKIDVPVLI 233 (272)
T ss_dssp HHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--SEEEE
T ss_pred hhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCCCCEEE
Confidence 1220000 0000000 000000 0 00011223344455567899999999
Q ss_pred EEeCCCCCCCcHHHHHHHHHHHhCC-CCEEEEEeCCCCCC
Q 003363 765 LLGAQDLRVPVSNGLQYARALREKG-VETKVIVFPNDVHG 803 (826)
Q Consensus 765 i~G~~D~~vp~~~~~~~~~~l~~~g-~~~~~~~~p~~~H~ 803 (826)
+.|..|.... ..+.+.+++|+..+ .+.++++-|. +|+
T Consensus 234 v~Gw~D~~~~-~~~~~~~~~l~~~~~~~~~Liigpw-~H~ 271 (272)
T PF02129_consen 234 VGGWYDTLFL-RGALRAYEALRAPGSKPQRLIIGPW-THG 271 (272)
T ss_dssp EEETTCSSTS-HHHHHHHHHHCTTSTC-EEEEEESE-STT
T ss_pred ecccCCcccc-hHHHHHHHHhhcCCCCCCEEEEeCC-CCC
Confidence 9999996666 89999999999988 6778888765 564
|
It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A .... |
| >TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.1e-14 Score=151.61 Aligned_cols=218 Identities=15% Similarity=0.214 Sum_probs=127.1
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
..|.||++||++++. ...+......+.+.||.|+++|+||.+ .+.... .......++++.+.+..+++. ++.
T Consensus 24 ~~~~vl~~hG~~g~~-~~~~~~~~~~l~~~g~~vi~~d~~G~G---~s~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~ 95 (288)
T TIGR01250 24 EKIKLLLLHGGPGMS-HEYLENLRELLKEEGREVIMYDQLGCG---YSDQPD--DSDELWTIDYFVDELEEVREK--LGL 95 (288)
T ss_pred CCCeEEEEcCCCCcc-HHHHHHHHHHHHhcCCEEEEEcCCCCC---CCCCCC--cccccccHHHHHHHHHHHHHH--cCC
Confidence 357899999987553 223344445556669999999999954 332110 000013456666666666665 345
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhcc-----CCCCCC-ch-hhhhccCcC----------Ccc
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-----TTDIPD-WC-YVESYGSKG----------KDS 733 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~-----~~~~~~-~~-~~~~~~~~~----------~~~ 733 (826)
+++.++|||+||.+++.++..+|++++++|+.+++........ ....+. .. ......... ...
T Consensus 96 ~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (288)
T TIGR01250 96 DKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEYVKELNRLRKELPPEVRAAIKRCEASGDYDNPEYQEAVEV 175 (288)
T ss_pred CcEEEEEeehHHHHHHHHHHhCccccceeeEecccccchHHHHHHHHHHhhcChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 6799999999999999999999999999998877543211100 000000 00 000000000 000
Q ss_pred C------CCCCChhhHHH------------------------HhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHH
Q 003363 734 F------TESPSVEDLTR------------------------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYAR 783 (826)
Q Consensus 734 ~------~~~~~~~~~~~------------------------~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~ 783 (826)
+ ......+.... +........+.++++|+|+++|+.|. +++.....+.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~-~~~~~~~~~~~ 254 (288)
T TIGR01250 176 FYHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEFDT-MTPEAAREMQE 254 (288)
T ss_pred HHHHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCCCc-cCHHHHHHHHH
Confidence 0 00000000000 00011123456789999999999998 46677766666
Q ss_pred HHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 784 ALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 784 ~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
.+.. .++++++++||..... ...++.+.+.+||+
T Consensus 255 ~~~~----~~~~~~~~~gH~~~~e-~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 255 LIAG----SRLVVFPDGSHMTMIE-DPEVYFKLLSDFIR 288 (288)
T ss_pred hccC----CeEEEeCCCCCCcccC-CHHHHHHHHHHHhC
Confidence 5543 6788999999987754 44578888888874
|
This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase |
| >TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.9e-15 Score=154.72 Aligned_cols=238 Identities=12% Similarity=0.121 Sum_probs=140.2
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--CccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~--~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
.+|..+.|+++.|.+ . +.+.||++|||+.... ...+...+..|+++||.|+++|+||.+ .+... ... .
T Consensus 9 ~~~~~l~g~~~~p~~---~-~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G---~S~~~--~~~-~ 78 (274)
T TIGR03100 9 CEGETLVGVLHIPGA---S-HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMG---DSEGE--NLG-F 78 (274)
T ss_pred cCCcEEEEEEEcCCC---C-CCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCC---CCCCC--CCC-H
Confidence 356789999999863 2 2356777777654321 223455678899999999999999954 33211 011 1
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccC
Q 003363 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 728 (826)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 728 (826)
....+|+.++++++.+.. -..++|.++|||+||.+++.++.. ++.++++|+.+|.......... ......+......
T Consensus 79 ~~~~~d~~~~~~~l~~~~-~g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~~~~~~~~-~~~~~~~~~~~~~ 155 (274)
T TIGR03100 79 EGIDADIAAAIDAFREAA-PHLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVRTEAAQAA-SRIRHYYLGQLLS 155 (274)
T ss_pred HHHHHHHHHHHHHHHhhC-CCCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCccCCcccchH-HHHHHHHHHHHhC
Confidence 123678999999988752 123679999999999999988765 5689999999987431110000 0000000000000
Q ss_pred -cCCcc-CCCCCChh-hHHHHhh----c---C-----------cccccCCCCCcEEEEEeCCCCCCCcHHH-----HHHH
Q 003363 729 -KGKDS-FTESPSVE-DLTRFHS----K---S-----------PISHISKVKTPTIFLLGAQDLRVPVSNG-----LQYA 782 (826)
Q Consensus 729 -~~~~~-~~~~~~~~-~~~~~~~----~---s-----------p~~~~~~i~~PvLii~G~~D~~vp~~~~-----~~~~ 782 (826)
..... +.+..... ....+.. . . -...+.++++|+|+++|+.|...+.... .+..
T Consensus 156 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~ll~~g~~D~~~~~~~~~~~~~~~~~ 235 (274)
T TIGR03100 156 ADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLERFQGPVLFILSGNDLTAQEFADSVLGEPAWR 235 (274)
T ss_pred hHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHhcCCcEEEEEcCcchhHHHHHHHhccChhhH
Confidence 00000 00000000 0000000 0 0 0123456789999999999987521110 1222
Q ss_pred HHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 783 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 783 ~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+.+.. ..++++.+|+++|.+.......++...|.+||++
T Consensus 236 ~~l~~--~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~~ 274 (274)
T TIGR03100 236 GALED--PGIERVEIDGADHTFSDRVWREWVAARTTEWLRR 274 (274)
T ss_pred HHhhc--CCeEEEecCCCCcccccHHHHHHHHHHHHHHHhC
Confidence 22321 3588999999999887777777899999999964
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily. |
| >PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-14 Score=144.61 Aligned_cols=191 Identities=19% Similarity=0.237 Sum_probs=113.6
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHH-HHHHCCcEEEEECCCC---CCCCch---hhhhcCCCCC-CcchHHHH----
Q 003363 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRG---SLGFGE---EALQSLPGKV-GSQDVNDV---- 655 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~-~la~~G~~Vl~~d~rG---~~g~G~---~~~~~~~~~~-~~~~~~D~---- 655 (826)
..+..|+||++||.+... ..+..... .+......++.++-+. ....|. .|.+...... ...+.+++
T Consensus 10 ~~~~~~lvi~LHG~G~~~--~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~ 87 (216)
T PF02230_consen 10 KGKAKPLVILLHGYGDSE--DLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESA 87 (216)
T ss_dssp SST-SEEEEEE--TTS-H--HHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHH
T ss_pred CCCCceEEEEECCCCCCc--chhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHH
Confidence 467789999999965432 22222222 1223457777776431 001122 3422211111 11122332
Q ss_pred ---HHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCc
Q 003363 656 ---LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 732 (826)
Q Consensus 656 ---~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (826)
.+.++...+.+ ++++||+|+|+|.||.+++.++.++|+.+.++|+.++.......
T Consensus 88 ~~l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~--------------------- 145 (216)
T PF02230_consen 88 ERLDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESE--------------------- 145 (216)
T ss_dssp HHHHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCC---------------------
T ss_pred HHHHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccc---------------------
Confidence 23333333333 89999999999999999999999999999999999885421100
Q ss_pred cCCCCCChhhHHHHhhcCcccccCC-CCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHH
Q 003363 733 SFTESPSVEDLTRFHSKSPISHISK-VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 811 (826)
Q Consensus 733 ~~~~~~~~~~~~~~~~~sp~~~~~~-i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~ 811 (826)
. . ..... -++|++++||..|+++|.+.++..++.|++.+.++++..|++.||.+. .
T Consensus 146 ------~-~-----------~~~~~~~~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~-----~ 202 (216)
T PF02230_consen 146 ------L-E-----------DRPEALAKTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEIS-----P 202 (216)
T ss_dssp ------C-H-----------CCHCCCCTS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS-------H
T ss_pred ------c-c-----------ccccccCCCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----H
Confidence 0 0 00011 168999999999999999999999999999999999999999999885 4
Q ss_pred HHHHHHHHHHHHHc
Q 003363 812 ESFLNIGLWFKKYC 825 (826)
Q Consensus 812 ~~~~~i~~w~~~~l 825 (826)
+.+..+.+||++++
T Consensus 203 ~~~~~~~~~l~~~~ 216 (216)
T PF02230_consen 203 EELRDLREFLEKHI 216 (216)
T ss_dssp HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhhhC
Confidence 77889999999875
|
; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.4e-14 Score=151.33 Aligned_cols=262 Identities=17% Similarity=0.184 Sum_probs=163.4
Q ss_pred CCCCCeEEEEecCCC-----CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 003363 162 SPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (826)
Q Consensus 162 SPdG~~la~~~~~~~-----~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~ 235 (826)
||||+++++..+..+ ....+++.+ ..++.+++....... ..+.|||||+.|||+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~----------~~~~~sP~g~~~~~v~--------- 61 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKL----------QDAKWSPDGKYIAFVR--------- 61 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTB----------SEEEE-SSSTEEEEEE---------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCcccc----------ccceeecCCCeeEEEe---------
Confidence 899999999765421 222345444 344444443321122 7899999999999983
Q ss_pred ccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCC--C--------------C-ccc
Q 003363 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK--S--------------L-SVG 298 (826)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~--~--------------~-~~~ 298 (826)
..+||+.+..+++.++|+ ..+ . + ...
T Consensus 62 ------------------------------------~~nly~~~~~~~~~~~lT-~dg~~~i~nG~~dwvyeEEv~~~~~ 104 (353)
T PF00930_consen 62 ------------------------------------DNNLYLRDLATGQETQLT-TDGEPGIYNGVPDWVYEEEVFDRRS 104 (353)
T ss_dssp ------------------------------------TTEEEEESSTTSEEEESE-S--TTTEEESB--HHHHHHTSSSSB
T ss_pred ------------------------------------cCceEEEECCCCCeEEec-cccceeEEcCccceecccccccccc
Confidence 368999999999988885 111 0 1 224
Q ss_pred eEEEeeCCCCCccEEEEEeecCc-ce----------------eeeeeeec----cCCCceEEEEcccccchhhhhhhhcC
Q 003363 299 QVVWAPLNEGLHQYLVFVGWSSE-TR----------------KLGIKYCY----NRPCALYAVRVSLYKSEASELELKES 357 (826)
Q Consensus 299 ~~~wSPDg~~~~~~lvf~~~~~~-~~----------------~~g~~~~~----~~~~~l~~~d~~~~~~~~~~~~~~~~ 357 (826)
.+.|||||++ |+|...... .+ ..-+.|.. |....|+++|+
T Consensus 105 ~~~WSpd~~~----la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~--------------- 165 (353)
T PF00930_consen 105 AVWWSPDSKY----LAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDL--------------- 165 (353)
T ss_dssp SEEE-TTSSE----EEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEES---------------
T ss_pred ceEECCCCCE----EEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEEC---------------
Confidence 6789999999 999765433 11 11222211 22235777776
Q ss_pred CCCCCcceecC------CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeee
Q 003363 358 SSEDLPVVNLT------ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 431 (826)
Q Consensus 358 ~~~~~~~~~Lt------~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 431 (826)
++++...+. ........+.|++|+++|++....+. +....|.++|..++..+.+.... .+.
T Consensus 166 --~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~------q~~~~l~~~d~~tg~~~~~~~e~---~~~-- 232 (353)
T PF00930_consen 166 --ASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRD------QNRLDLVLCDASTGETRVVLEET---SDG-- 232 (353)
T ss_dssp --SSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETT------STEEEEEEEEECTTTCEEEEEEE---SSS--
T ss_pred --CCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccC------CCEEEEEEEECCCCceeEEEEec---CCc--
Confidence 555543332 23445778999999997777766542 34567888898876553322111 010
Q ss_pred ccCCCCCcccccCCCCCCccc-cCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCe-eeEEEeecCCEEEEEEeCC
Q 003363 432 CAEGDCFPGLYSSSILSNPWL-SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNF-SWSLLTLDGDNIIAVSSSP 509 (826)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws-~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~-~~~~~s~dg~~l~~~~s~~ 509 (826)
|-.....+.|. +++..+++.+...|..+||.++.+++..++||.+...+ ....++.+++.|+|.+...
T Consensus 233 ----------Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~ 302 (353)
T PF00930_consen 233 ----------WVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGD 302 (353)
T ss_dssp ----------SSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSG
T ss_pred ----------ceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCC
Confidence 11122234454 88888999888889999999999999999999998866 4467888899999998773
Q ss_pred C-CCCeEEEEeec
Q 003363 510 V-DVPQVKYGYFV 521 (826)
Q Consensus 510 ~-~p~~l~~~~~~ 521 (826)
. .-..||.+++.
T Consensus 303 ~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 303 NPGERHLYRVSLD 315 (353)
T ss_dssp GTTSBEEEEEETT
T ss_pred CCCceEEEEEEeC
Confidence 3 22346666665
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK11071 esterase YqiA; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.2e-14 Score=139.10 Aligned_cols=183 Identities=14% Similarity=0.115 Sum_probs=116.8
Q ss_pred cEEEEEcCCCCCCCCccch--HHHHHHHH--CCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCC
Q 003363 593 PLIVVLHGGPHSVSLSSYS--KSLAFLSS--VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~--~~~~~la~--~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (826)
|.||++||.+.+ ...|. .....|++ .+|.|+++|++| ++ ++..+.+..++++ .
T Consensus 2 p~illlHGf~ss--~~~~~~~~~~~~l~~~~~~~~v~~~dl~g---~~----------------~~~~~~l~~l~~~--~ 58 (190)
T PRK11071 2 STLLYLHGFNSS--PRSAKATLLKNWLAQHHPDIEMIVPQLPP---YP----------------ADAAELLESLVLE--H 58 (190)
T ss_pred CeEEEECCCCCC--cchHHHHHHHHHHHHhCCCCeEEeCCCCC---CH----------------HHHHHHHHHHHHH--c
Confidence 679999996655 33444 23455655 379999999998 32 2344555555554 2
Q ss_pred CCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh-hccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHh
Q 003363 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 747 (826)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (826)
+.+++.++|+|+||++++.++.++|. .+|+.+|..+... .......... .+. ...+. ...+..+...
T Consensus 59 ~~~~~~lvG~S~Gg~~a~~~a~~~~~---~~vl~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~--~~~~~~~d~~ 126 (190)
T PRK11071 59 GGDPLGLVGSSLGGYYATWLSQCFML---PAVVVNPAVRPFELLTDYLGENEN----PYT---GQQYV--LESRHIYDLK 126 (190)
T ss_pred CCCCeEEEEECHHHHHHHHHHHHcCC---CEEEECCCCCHHHHHHHhcCCccc----ccC---CCcEE--EcHHHHHHHH
Confidence 34689999999999999999999883 3467777665311 1100000000 000 00000 1122333333
Q ss_pred hcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 748 SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 748 ~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
...+.. +. ..+|++++||++|+.||++.+.++++. +++++++|++|.+... .+....+.+|+.
T Consensus 127 ~~~~~~-i~-~~~~v~iihg~~De~V~~~~a~~~~~~-------~~~~~~~ggdH~f~~~---~~~~~~i~~fl~ 189 (190)
T PRK11071 127 VMQIDP-LE-SPDLIWLLQQTGDEVLDYRQAVAYYAA-------CRQTVEEGGNHAFVGF---ERYFNQIVDFLG 189 (190)
T ss_pred hcCCcc-CC-ChhhEEEEEeCCCCcCCHHHHHHHHHh-------cceEEECCCCcchhhH---HHhHHHHHHHhc
Confidence 333322 33 667899999999999999999999984 3566789999999644 567888888874
|
|
| >TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.7e-14 Score=147.00 Aligned_cols=212 Identities=15% Similarity=0.187 Sum_probs=126.4
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHH-HHHHHHcCCCCCC
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLANPS 671 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~d~~ 671 (826)
|+||++||.+.. ...|......|+ +||.|+++|+||.+.... +......+.+++... +..+.+. .+.+
T Consensus 2 ~~vv~~hG~~~~--~~~~~~~~~~L~-~~~~v~~~d~~g~G~s~~------~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 70 (251)
T TIGR03695 2 PVLVFLHGFLGS--GADWQALIELLG-PHFRCLAIDLPGHGSSQS------PDEIERYDFEEAAQDILATLLDQ--LGIE 70 (251)
T ss_pred CEEEEEcCCCCc--hhhHHHHHHHhc-ccCeEEEEcCCCCCCCCC------CCccChhhHHHHHHHHHHHHHHH--cCCC
Confidence 789999997654 456777888887 899999999999544311 111223345555555 5555554 3557
Q ss_pred cEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC----CCCCCch----------hhhhccC-cCCccCCC
Q 003363 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT----TDIPDWC----------YVESYGS-KGKDSFTE 736 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~----~~~~~~~----------~~~~~~~-~~~~~~~~ 736 (826)
++.++|||+||.+++.++.++|+.++++++.++...+...... .....+. +...+.. ........
T Consensus 71 ~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (251)
T TIGR03695 71 PFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGLATEEERAARRQNDEQLAQRFEQEGLEAFLDDWYQQPLFASQKN 150 (251)
T ss_pred eEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCCcCchHhhhhhhhcchhhhhHHHhcCccHHHHHHhcCceeeeccc
Confidence 8999999999999999999999999999998875432110000 0000000 0000000 00000000
Q ss_pred CCC---------------hhhHHHHh------hcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEE
Q 003363 737 SPS---------------VEDLTRFH------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 795 (826)
Q Consensus 737 ~~~---------------~~~~~~~~------~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 795 (826)
... ......+. ..+....+.++++|+|+++|++|..++ .. .+.+.+.....+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~-~~----~~~~~~~~~~~~~~ 225 (251)
T TIGR03695 151 LPPEQRQALRAKRLANNPEGLAKMLRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFV-QI----AKEMQKLLPNLTLV 225 (251)
T ss_pred CChHHhHHHHHhcccccchHHHHHHHHhhhhcccchHHHhhCCCCceEEEeeCcchHHH-HH----HHHHHhcCCCCcEE
Confidence 000 00000110 112223456789999999999998653 22 23344444457899
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHH
Q 003363 796 VFPNDVHGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 796 ~~p~~~H~~~~~~~~~~~~~~i~~w~ 821 (826)
++|++||.+..... .++...|.+||
T Consensus 226 ~~~~~gH~~~~e~~-~~~~~~i~~~l 250 (251)
T TIGR03695 226 IIANAGHNIHLENP-EAFAKILLAFL 250 (251)
T ss_pred EEcCCCCCcCccCh-HHHHHHHHHHh
Confidence 99999998765544 46777788876
|
This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. |
| >COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.3e-14 Score=139.68 Aligned_cols=227 Identities=17% Similarity=0.174 Sum_probs=144.4
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC
Q 003363 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (826)
...+.|+||.+||-.++.........+..+.++||.|+++|.||+++.-.. .+.-+.....+|+..+++++.+..
T Consensus 71 ~~~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~----~p~~yh~G~t~D~~~~l~~l~~~~- 145 (345)
T COG0429 71 RAAKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANT----SPRLYHSGETEDIRFFLDWLKARF- 145 (345)
T ss_pred cccCCceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCccc----CcceecccchhHHHHHHHHHHHhC-
Confidence 355669999999965554444444577788999999999999997654321 133333345699999999999864
Q ss_pred CCCCcEEEEEecchHHHHHHHHHhCCC--ceeEEEecCCccchhhhccCCCCCCc-hhhh--------------------
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNPLCNLALMVGTTDIPDW-CYVE-------------------- 724 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~p~~~~~~~~~~~~~~~~-~~~~-------------------- 724 (826)
.+.++..+|.|+||.+.+.++++..+ .+.+++.++-.+|+.......+...+ .+..
T Consensus 146 -~~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~~~~~l~~~~s~~ly~r~l~~~L~~~~~~kl~~l~~ 224 (345)
T COG0429 146 -PPRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEACAYRLDSGFSLRLYSRYLLRNLKRNAARKLKELEP 224 (345)
T ss_pred -CCCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 36789999999999555555554332 34555555554554222111111111 0000
Q ss_pred -----------------hccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHh
Q 003363 725 -----------------SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE 787 (826)
Q Consensus 725 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~ 787 (826)
.+.........+. .+..+.|...|.+..+.+|.+|+||||..+|++++++..-.....
T Consensus 225 ~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf--~da~dYYr~aSs~~~L~~Ir~PtLii~A~DDP~~~~~~iP~~~~~--- 299 (345)
T COG0429 225 SLPGTVLAAIKRCRTIREFDDLLTAPLHGF--ADAEDYYRQASSLPLLPKIRKPTLIINAKDDPFMPPEVIPKLQEM--- 299 (345)
T ss_pred ccCcHHHHHHHhhchHHhccceeeecccCC--CcHHHHHHhccccccccccccceEEEecCCCCCCChhhCCcchhc---
Confidence 0000001111122 244566778899999999999999999999999987554333222
Q ss_pred CCCCEEEEEeCCCCCCCC-C-C--CCHHHHHHHHHHHHHHHc
Q 003363 788 KGVETKVIVFPNDVHGIE-R-P--QSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 788 ~g~~~~~~~~p~~~H~~~-~-~--~~~~~~~~~i~~w~~~~l 825 (826)
.+..+.+.+-+-+||.-. . . ....-..+++.+||+.++
T Consensus 300 ~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~ 341 (345)
T COG0429 300 LNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFL 341 (345)
T ss_pred CCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHH
Confidence 345689999999999622 1 1 111245578999998875
|
|
| >TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.1e-15 Score=150.58 Aligned_cols=206 Identities=17% Similarity=0.197 Sum_probs=125.5
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCc
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 672 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 672 (826)
|.||++||.+.. ...|...+..|+ .+|.|+++|+||.+. +.. ....+++++.+ .+.+. + .++
T Consensus 5 ~~iv~~HG~~~~--~~~~~~~~~~l~-~~~~vi~~d~~G~G~---s~~------~~~~~~~~~~~---~~~~~--~-~~~ 66 (245)
T TIGR01738 5 VHLVLIHGWGMN--AEVFRCLDEELS-AHFTLHLVDLPGHGR---SRG------FGPLSLADAAE---AIAAQ--A-PDP 66 (245)
T ss_pred ceEEEEcCCCCc--hhhHHHHHHhhc-cCeEEEEecCCcCcc---CCC------CCCcCHHHHHH---HHHHh--C-CCC
Confidence 679999996554 456777777775 479999999999543 321 11123444444 33333 2 268
Q ss_pred EEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCC-CCC-------------Cch-hhhh------ccCcCC
Q 003363 673 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT-DIP-------------DWC-YVES------YGSKGK 731 (826)
Q Consensus 673 v~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~-~~~-------------~~~-~~~~------~~~~~~ 731 (826)
+.++|||+||.+++.++.++|++++++|+.++...+....... ... .+. .... ++....
T Consensus 67 ~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (245)
T TIGR01738 67 AIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTLGTPTA 146 (245)
T ss_pred eEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999877643221000000 000 000 0000 000000
Q ss_pred c--------cC--CCCCChhh----HHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEe
Q 003363 732 D--------SF--TESPSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 797 (826)
Q Consensus 732 ~--------~~--~~~~~~~~----~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 797 (826)
. .+ ...+.... ...+...+....+.++++|+|+++|++|..+|++....+.+.++ .++++++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~~ 222 (245)
T TIGR01738 147 RQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQNISVPFLRLYGYLDGLVPAKVVPYLDKLAP----HSELYIF 222 (245)
T ss_pred chHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhcCCCCEEEEeecCCcccCHHHHHHHHHhCC----CCeEEEe
Confidence 0 00 00000000 01111112223467899999999999999999988887777665 3788999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHH
Q 003363 798 PNDVHGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 798 p~~~H~~~~~~~~~~~~~~i~~w~ 821 (826)
+++||.....+ ..++.+.+.+|+
T Consensus 223 ~~~gH~~~~e~-p~~~~~~i~~fi 245 (245)
T TIGR01738 223 AKAAHAPFLSH-AEAFCALLVAFK 245 (245)
T ss_pred CCCCCCccccC-HHHHHHHHHhhC
Confidence 99999877554 447778888774
|
This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria. |
| >PLN02894 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.9e-14 Score=154.90 Aligned_cols=222 Identities=17% Similarity=0.208 Sum_probs=127.1
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCc-chHH-HHHHHHHHHHHcCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS-QDVN-DVLTAIDHVIDMGL 667 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~-~~~~-D~~~~i~~l~~~~~ 667 (826)
+..|+||++||.+.. ...|...+..|++ +|.|+++|+||.+...+. . ..... .... .+.+.+..+++.
T Consensus 103 ~~~p~vvllHG~~~~--~~~~~~~~~~L~~-~~~vi~~D~rG~G~S~~~---~--~~~~~~~~~~~~~~~~i~~~~~~-- 172 (402)
T PLN02894 103 EDAPTLVMVHGYGAS--QGFFFRNFDALAS-RFRVIAIDQLGWGGSSRP---D--FTCKSTEETEAWFIDSFEEWRKA-- 172 (402)
T ss_pred CCCCEEEEECCCCcc--hhHHHHHHHHHHh-CCEEEEECCCCCCCCCCC---C--cccccHHHHHHHHHHHHHHHHHH--
Confidence 456899999997654 3455566677765 599999999995543221 1 01111 1111 223333333333
Q ss_pred CCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhcc----C-CCCCCch---------------------
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG----T-TDIPDWC--------------------- 721 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~----~-~~~~~~~--------------------- 721 (826)
.+.+++.|+||||||++++.++.++|++++++|+.+|..-...... . .....|.
T Consensus 173 l~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 252 (402)
T PLN02894 173 KNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESNFTPQKIIRGL 252 (402)
T ss_pred cCCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcCCCHHHHHHhc
Confidence 3456899999999999999999999999999999887531110000 0 0000010
Q ss_pred ------hhhhccCcCC-ccCCC--CC--ChhhHHH------------------H-----hhcCcc-cccCCCCCcEEEEE
Q 003363 722 ------YVESYGSKGK-DSFTE--SP--SVEDLTR------------------F-----HSKSPI-SHISKVKTPTIFLL 766 (826)
Q Consensus 722 ------~~~~~~~~~~-~~~~~--~~--~~~~~~~------------------~-----~~~sp~-~~~~~i~~PvLii~ 766 (826)
....+..... ..... .. ..+.... + ....+. ..+.++++|+|+++
T Consensus 253 gp~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~vP~liI~ 332 (402)
T PLN02894 253 GPWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESASEWKVPTTFIY 332 (402)
T ss_pred cchhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcccCCCCEEEEE
Confidence 0000000000 00000 00 0000000 0 001222 34677899999999
Q ss_pred eCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 767 GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 767 G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
|++|..++ ....++.+.+ +..+++++++++||.....+. ..+.+.+.+|++.++.
T Consensus 333 G~~D~i~~-~~~~~~~~~~---~~~~~~~~i~~aGH~~~~E~P-~~f~~~l~~~~~~~~~ 387 (402)
T PLN02894 333 GRHDWMNY-EGAVEARKRM---KVPCEIIRVPQGGHFVFLDNP-SGFHSAVLYACRKYLS 387 (402)
T ss_pred eCCCCCCc-HHHHHHHHHc---CCCCcEEEeCCCCCeeeccCH-HHHHHHHHHHHHHhcc
Confidence 99998654 5555554443 335789999999997665544 4788899999888763
|
|
| >PRK03204 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.6e-14 Score=148.66 Aligned_cols=210 Identities=15% Similarity=0.191 Sum_probs=126.9
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.|.||++||.+.. ...|...+..|. .+|.|+++|+||.+.++.. .. .....+++.+.+..+++. ++.+
T Consensus 34 ~~~iv~lHG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~------~~-~~~~~~~~~~~~~~~~~~--~~~~ 101 (286)
T PRK03204 34 GPPILLCHGNPTW--SFLYRDIIVALR-DRFRCVAPDYLGFGLSERP------SG-FGYQIDEHARVIGEFVDH--LGLD 101 (286)
T ss_pred CCEEEEECCCCcc--HHHHHHHHHHHh-CCcEEEEECCCCCCCCCCC------Cc-cccCHHHHHHHHHHHHHH--hCCC
Confidence 4789999997633 345666667775 4699999999995433211 11 123567888888887776 3457
Q ss_pred cEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchh---------hhccCCCCCCch-----hhhhccCcCCccCCCC
Q 003363 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA---------LMVGTTDIPDWC-----YVESYGSKGKDSFTES 737 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~---------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 737 (826)
++.++|||+||.++..++..+|++++++|+.++..-.. ............ +...+... .....
T Consensus 102 ~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 178 (286)
T PRK03204 102 RYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSRVMSSPPVQYAILRRNFFVERLIPA---GTEHR 178 (286)
T ss_pred CEEEEEECccHHHHHHHHHhChhheeEEEEECccccCCCchhHHHHHHHhccccchhhhhhhhHHHHHhccc---cccCC
Confidence 89999999999999999999999999999877643100 000000000000 00000000 00000
Q ss_pred CChhhHHHHh-----------------h---cCc-cc----ccC--CCCCcEEEEEeCCCCCCCcH-HHHHHHHHHHhCC
Q 003363 738 PSVEDLTRFH-----------------S---KSP-IS----HIS--KVKTPTIFLLGAQDLRVPVS-NGLQYARALREKG 789 (826)
Q Consensus 738 ~~~~~~~~~~-----------------~---~sp-~~----~~~--~i~~PvLii~G~~D~~vp~~-~~~~~~~~l~~~g 789 (826)
...+....+. . ..+ .. .+. .+++|+|+++|++|..+++. .++.+.+.+.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PtliI~G~~D~~~~~~~~~~~~~~~ip~-- 256 (286)
T PRK03204 179 PSSAVMAHYRAVQPNAAARRGVAEMPKQILAARPLLARLAREVPATLGTKPTLLVWGMKDVAFRPKTILPRLRATFPD-- 256 (286)
T ss_pred CCHHHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHhhhhhhhhcCCCCeEEEecCCCcccCcHHHHHHHHHhcCC--
Confidence 0000000000 0 000 00 011 12799999999999988665 45566666654
Q ss_pred CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 003363 790 VETKVIVFPNDVHGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 790 ~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~ 821 (826)
.++++++++||....... .++.+.+.+||
T Consensus 257 --~~~~~i~~aGH~~~~e~P-e~~~~~i~~~~ 285 (286)
T PRK03204 257 --HVLVELPNAKHFIQEDAP-DRIAAAIIERF 285 (286)
T ss_pred --CeEEEcCCCcccccccCH-HHHHHHHHHhc
Confidence 689999999998775544 47788888886
|
|
| >PRK10349 carboxylesterase BioH; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-14 Score=147.77 Aligned_cols=206 Identities=20% Similarity=0.202 Sum_probs=125.6
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCc
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 672 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 672 (826)
|.||++||.+.+ ...|...+..|.+ .|.|+++|+||. |.+.. + .....+++.+ .+.+. ..++
T Consensus 14 ~~ivllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G~---G~S~~---~---~~~~~~~~~~---~l~~~---~~~~ 75 (256)
T PRK10349 14 VHLVLLHGWGLN--AEVWRCIDEELSS-HFTLHLVDLPGF---GRSRG---F---GALSLADMAE---AVLQQ---APDK 75 (256)
T ss_pred CeEEEECCCCCC--hhHHHHHHHHHhc-CCEEEEecCCCC---CCCCC---C---CCCCHHHHHH---HHHhc---CCCC
Confidence 569999996654 4578778888865 599999999994 44321 1 1123444443 33333 2478
Q ss_pred EEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCC-CCc-------------hhhhh------ccCcCC-
Q 003363 673 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI-PDW-------------CYVES------YGSKGK- 731 (826)
Q Consensus 673 v~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~-~~~-------------~~~~~------~~~~~~- 731 (826)
+.++|||+||++++.++.++|++++++|++++............. ..+ ..... +.....
T Consensus 76 ~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (256)
T PRK10349 76 AIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTETAR 155 (256)
T ss_pred eEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHHHHccCchHH
Confidence 999999999999999999999999999988763221000000000 000 00000 000000
Q ss_pred -------ccCCC--CCChhh----HHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeC
Q 003363 732 -------DSFTE--SPSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 798 (826)
Q Consensus 732 -------~~~~~--~~~~~~----~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p 798 (826)
..+.. .+.... ...+...+....+.++++|+|+++|+.|..+|.+.+..+.+.+++ .+++++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i~~----~~~~~i~ 231 (256)
T PRK10349 156 QDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWPH----SESYIFA 231 (256)
T ss_pred HHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCCHHHHHHHHHhCCC----CeEEEeC
Confidence 00000 000000 011122333445778999999999999999998887766666654 6899999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHH
Q 003363 799 NDVHGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 799 ~~~H~~~~~~~~~~~~~~i~~w~ 821 (826)
++||....... ..+...+.+|-
T Consensus 232 ~~gH~~~~e~p-~~f~~~l~~~~ 253 (256)
T PRK10349 232 KAAHAPFISHP-AEFCHLLVALK 253 (256)
T ss_pred CCCCCccccCH-HHHHHHHHHHh
Confidence 99998775443 46777777664
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.9e-13 Score=134.77 Aligned_cols=344 Identities=15% Similarity=0.080 Sum_probs=217.7
Q ss_pred cCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEE
Q 003363 91 NISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLV 170 (826)
Q Consensus 91 ~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~ 170 (826)
.+.+-.+-...|-.||||+.|||+.-... +......++.++ ..+++.+++|.-+- .-..-.-|+|||+-|++
T Consensus 73 ritS~lGVvnn~kf~pdGrkvaf~rv~~~--ss~~taDly~v~--~e~Ge~kRiTyfGr----~fT~VaG~~~dg~iiV~ 144 (668)
T COG4946 73 RITSGLGVVNNPKFSPDGRKVAFSRVMLG--SSLQTADLYVVP--SEDGEAKRITYFGR----RFTRVAGWIPDGEIIVS 144 (668)
T ss_pred EEecccceeccccCCCCCcEEEEEEEEec--CCCccccEEEEe--CCCCcEEEEEEecc----ccceeeccCCCCCEEEE
Confidence 34444555667778999999999654332 223445677755 57778888886541 12344679999998876
Q ss_pred EecC--------------C--------------------------------------CCCC-eEEEEecCC-ceeEEEec
Q 003363 171 VRNP--------------E--------------------------------------NESP-IQFELWSQS-QLEKEFHV 196 (826)
Q Consensus 171 ~~~~--------------~--------------------------------------~~~~-~~~~i~~~~-~~~~~~~~ 196 (826)
...- + ++.. .+|.-.++| ..++.+++
T Consensus 145 TD~~tPF~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl 224 (668)
T COG4946 145 TDFHTPFSQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDL 224 (668)
T ss_pred eccCCCcccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCcccccccCCccceEEEEecCCcceeeeeec
Confidence 4310 0 0111 111111333 45555555
Q ss_pred CCCcc------------------ccccCC---C-------cc---cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCC
Q 003363 197 PQTVH------------------GSVYAD---G-------WF---EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGS 245 (826)
Q Consensus 197 ~~~~~------------------g~v~~~---~-------~~---~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~ 245 (826)
+..+. |.+|.- + -| ..=.-+.|||+|+|..... ...++.......+
T Consensus 225 ~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~Gd---IylydP~td~lek 301 (668)
T COG4946 225 DGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNAGD---IYLYDPETDSLEK 301 (668)
T ss_pred CCCcCCceEEcceEEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEecCCc---EEEeCCCcCccee
Confidence 43321 222321 1 01 1224789999999975322 0111111111111
Q ss_pred CC--------ccCCCCCCcce----eecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003363 246 SD--------KDCNSWKGQGD----WEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 246 ~~--------~~~~~~~~~~~----~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (826)
.+ ++......... |..--|+.++...+.+.|+++...|-+.++ .....+....++-|++. +
T Consensus 302 ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv---~~~~~VrY~r~~~~~e~----~ 374 (668)
T COG4946 302 LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQV---GKKGGVRYRRIQVDPEG----D 374 (668)
T ss_pred eecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEc---CCCCceEEEEEccCCcc----e
Confidence 11 11111111111 333336777777889999999988888887 34445777788888887 7
Q ss_pred EEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccC
Q 003363 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (826)
Q Consensus 314 vf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~ 393 (826)
+...++.+ .|-++|. .+++.+++....+.+.....|||||+++..- +
T Consensus 375 vigt~dgD--------------~l~iyd~-----------------~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN-d- 421 (668)
T COG4946 375 VIGTNDGD--------------KLGIYDK-----------------DGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN-D- 421 (668)
T ss_pred EEeccCCc--------------eEEEEec-----------------CCceEEEeeCCccceEEEEEcCCCcEEEEEc-C-
Confidence 77664332 5778888 8899999999999999999999999876433 2
Q ss_pred CCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC-CeEEEEE
Q 003363 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-SSQVIIS 472 (826)
Q Consensus 394 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~-~~~~l~~ 472 (826)
..+||++|+++|..+.+.....+++ ..+.|+|++++|.++--.+ -.+.|-.
T Consensus 422 ---------r~el~vididngnv~~idkS~~~lI-------------------tdf~~~~nsr~iAYafP~gy~tq~Ikl 473 (668)
T COG4946 422 ---------RFELWVIDIDNGNVRLIDKSEYGLI-------------------TDFDWHPNSRWIAYAFPEGYYTQSIKL 473 (668)
T ss_pred ---------ceEEEEEEecCCCeeEeccccccee-------------------EEEEEcCCceeEEEecCcceeeeeEEE
Confidence 3689999999988765554443333 3678999999888776533 3557888
Q ss_pred EECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCC
Q 003363 473 VNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVP 513 (826)
Q Consensus 473 vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~ 513 (826)
.|++++++-.+|.+...-..++|++|++++++.+...-.|.
T Consensus 474 ydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLdPs 514 (668)
T COG4946 474 YDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSLDPS 514 (668)
T ss_pred EecCCCeEEEecCCcccccCcccCCCCcEEEEEeccccCCC
Confidence 89999999999887664445799999999999987665554
|
|
| >PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate [] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.2e-14 Score=148.85 Aligned_cols=227 Identities=17% Similarity=0.174 Sum_probs=131.9
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccc-hHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcch
Q 003363 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~-~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~ 651 (826)
|.++.|+++.|+ .+++.|+||++-| ..+. ...+ .....+|+.+|++++++|.+|.|. +....+..+ .
T Consensus 174 g~~I~g~LhlP~---~~~p~P~VIv~gG-lDs~-qeD~~~l~~~~l~~rGiA~LtvDmPG~G~---s~~~~l~~D----~ 241 (411)
T PF06500_consen 174 GKTIPGYLHLPS---GEKPYPTVIVCGG-LDSL-QEDLYRLFRDYLAPRGIAMLTVDMPGQGE---SPKWPLTQD----S 241 (411)
T ss_dssp TCEEEEEEEESS---SSS-EEEEEEE---TTS--GGGGHHHHHCCCHHCT-EEEEE--TTSGG---GTTT-S-S-----C
T ss_pred CcEEEEEEEcCC---CCCCCCEEEEeCC-cchh-HHHHHHHHHHHHHhCCCEEEEEccCCCcc---cccCCCCcC----H
Confidence 377999999998 5788998887755 3322 3333 334457899999999999999543 321111111 1
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccch-hhhc-cCCCCCCchhhhhccCc
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-ALMV-GTTDIPDWCYVESYGSK 729 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~-~~~~-~~~~~~~~~~~~~~~~~ 729 (826)
-.-..++++||.+.+.+|.+||+++|.|+||+.+..+|..++++++++|+.+|++.- ..-. .....| ..+...+..
T Consensus 242 ~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ft~~~~~~~~P-~my~d~LA~- 319 (411)
T PF06500_consen 242 SRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHFFTDPEWQQRVP-DMYLDVLAS- 319 (411)
T ss_dssp CHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCGGH-HHHHTTS--HHHHHHHHH-
T ss_pred HHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhhhccHHHHhcCC-HHHHHHHHH-
Confidence 123457889999999999999999999999999999998888999999999886432 1100 001111 112211111
Q ss_pred CCccCCCC-CChhh-HHHHhhcCccc--cc--CCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCC-C
Q 003363 730 GKDSFTES-PSVED-LTRFHSKSPIS--HI--SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDV-H 802 (826)
Q Consensus 730 ~~~~~~~~-~~~~~-~~~~~~~sp~~--~~--~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~-H 802 (826)
++... ...+. ...+...|-.. .+ ++..+|+|.+.|++|.++|.++.+.++. .+.+-+...++... |
T Consensus 320 ---rlG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P~eD~~lia~----~s~~gk~~~~~~~~~~ 392 (411)
T PF06500_consen 320 ---RLGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSPIEDSRLIAE----SSTDGKALRIPSKPLH 392 (411)
T ss_dssp ---HCT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS-HHHHHHHHH----TBTT-EEEEE-SSSHH
T ss_pred ---HhCCccCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCCHHHHHHHHh----cCCCCceeecCCCccc
Confidence 11111 11222 22334444433 23 6677999999999999999999755543 33345666666544 5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHc
Q 003363 803 GIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 803 ~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
.- -...+..+.+||++.|
T Consensus 393 ~g-----y~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 393 MG-----YPQALDEIYKWLEDKL 410 (411)
T ss_dssp HH-----HHHHHHHHHHHHHHHH
T ss_pred cc-----hHHHHHHHHHHHHHhc
Confidence 32 2367788999999875
|
This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C. |
| >PLN02872 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.3e-14 Score=153.94 Aligned_cols=248 Identities=18% Similarity=0.196 Sum_probs=148.7
Q ss_pred cCCCeeEEEEEEecCCC-CCCCCCcEEEEEcCCCCCCCCcc----chHHHHHHHHCCcEEEEECCCCCCC-CchhhhhcC
Q 003363 570 KGAQKPFEAIFVSSSHK-KDCSCDPLIVVLHGGPHSVSLSS----YSKSLAFLSSVGYSLLIVNYRGSLG-FGEEALQSL 643 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~-~~~~~~P~vv~~HGg~~~~~~~~----~~~~~~~la~~G~~Vl~~d~rG~~g-~G~~~~~~~ 643 (826)
..||..+....+.+... ....+.|+|+++||...+..... ....+..|+++||.|+++|.||.+. +|.......
T Consensus 51 T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~~~s~gh~~~~~~ 130 (395)
T PLN02872 51 TKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGTRWSYGHVTLSEK 130 (395)
T ss_pred CCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccccccccCCCCCCcc
Confidence 34555565555543221 12234688999999664432211 1234456889999999999999642 232211111
Q ss_pred CC-----CCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC---ceeEEEecCCccchh------
Q 003363 644 PG-----KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLA------ 709 (826)
Q Consensus 644 ~~-----~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~p~~~~~------ 709 (826)
.. .+......|+.++++++.+.. .+++.++|||+||.+++.++ .+|+ +++++++.+|+..+.
T Consensus 131 ~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l~P~~~~~~~~~~~ 206 (395)
T PLN02872 131 DKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALLCPISYLDHVTAPL 206 (395)
T ss_pred chhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHhcchhhhccCCCHH
Confidence 11 111222479999999998753 36899999999999998555 5676 577777777754220
Q ss_pred ----------hh---ccCCCC-C-Cc---------h---------hhhhccC----------------------------
Q 003363 710 ----------LM---VGTTDI-P-DW---------C---------YVESYGS---------------------------- 728 (826)
Q Consensus 710 ----------~~---~~~~~~-~-~~---------~---------~~~~~~~---------------------------- 728 (826)
.+ .+.... + .. | .....|.
T Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~n~~~~~~~~~~~pagtS~k~~~H~ 286 (395)
T PLN02872 207 VLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTNCCFNASRIDYYLEYEPHPSSVKNLRHL 286 (395)
T ss_pred HHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCCcccchhhhhHHHhcCCCcchHHHHHHH
Confidence 00 010000 0 00 0 0000000
Q ss_pred ------cCCccCCCCCChhhHHHHhhcCc-ccccCCC--CCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 003363 729 ------KGKDSFTESPSVEDLTRFHSKSP-ISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 799 (826)
Q Consensus 729 ------~~~~~~~~~~~~~~~~~~~~~sp-~~~~~~i--~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~ 799 (826)
...+.|.... .++...|....| ...+.++ ++|+++++|++|..+++..+.++.+.+... .+++.+++
T Consensus 287 ~Q~~~s~~f~~yDyg~-~~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~~---~~l~~l~~ 362 (395)
T PLN02872 287 FQMIRKGTFAHYDYGI-FKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLADVTDVEHTLAELPSK---PELLYLEN 362 (395)
T ss_pred HHHHhcCCcccCCCCc-hhhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCCCCCHHHHHHHHHHCCCc---cEEEEcCC
Confidence 0011111111 122333333333 4457787 579999999999999999998888888642 57888999
Q ss_pred CCCC--CCCCCCHHHHHHHHHHHHHHHc
Q 003363 800 DVHG--IERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 800 ~~H~--~~~~~~~~~~~~~i~~w~~~~l 825 (826)
.+|. +...+...++++.|++|+++++
T Consensus 363 ~gH~dfi~~~eape~V~~~Il~fL~~~~ 390 (395)
T PLN02872 363 YGHIDFLLSTSAKEDVYNHMIQFFRSLG 390 (395)
T ss_pred CCCHHHHhCcchHHHHHHHHHHHHHHhh
Confidence 9997 4456667789999999999875
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-13 Score=137.92 Aligned_cols=326 Identities=15% Similarity=0.150 Sum_probs=185.0
Q ss_pred cccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEec
Q 003363 94 SIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRN 173 (826)
Q Consensus 94 ~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~ 173 (826)
.=..+.+.-..||||++++ +++.+..+.+|++++... ........ .-+..++|||||++||..+.
T Consensus 113 GH~e~Vl~~~fsp~g~~l~---------tGsGD~TvR~WD~~TeTp-~~t~KgH~-----~WVlcvawsPDgk~iASG~~ 177 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLV---------TGSGDTTVRLWDLDTETP-LFTCKGHK-----NWVLCVAWSPDGKKIASGSK 177 (480)
T ss_pred CCCCcEEEEEecCCCceEE---------ecCCCceEEeeccCCCCc-ceeecCCc-----cEEEEEEECCCcchhhcccc
Confidence 3334555555667776654 445667788888765422 11111222 45899999999999998655
Q ss_pred CCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceee-----cCCCCeEEEEeecCCCCCCCccCCCCCCCCCCc
Q 003363 174 PENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISW-----NSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDK 248 (826)
Q Consensus 174 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~w-----SPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (826)
++ -+.+|+...-.++...-.+...+| .+++| .|+.++||..+.++..+ .|+...+.......
T Consensus 178 dg-----~I~lwdpktg~~~g~~l~gH~K~I------t~Lawep~hl~p~~r~las~skDg~vr--IWd~~~~~~~~~ls 244 (480)
T KOG0271|consen 178 DG-----SIRLWDPKTGQQIGRALRGHKKWI------TALAWEPLHLVPPCRRLASSSKDGSVR--IWDTKLGTCVRTLS 244 (480)
T ss_pred CC-----eEEEecCCCCCcccccccCcccce------eEEeecccccCCCccceecccCCCCEE--EEEccCceEEEEec
Confidence 43 577885333233332222332223 56665 56788888888777655 33322222222222
Q ss_pred cCCCCCCcceeecCCCccCCCccCceEEEEEccCCce-EeccCCCCCC---------ccceEEEeeCCCCCccEEEEEee
Q 003363 249 DCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPKSL---------SVGQVVWAPLNEGLHQYLVFVGW 318 (826)
Q Consensus 249 ~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~-~~l~~~~~~~---------~~~~~~wSPDg~~~~~~lvf~~~ 318 (826)
.+..-+.-..|..+ |-.|++..+..|.+|+...|.. +.++|....+ -...-+|-|-|++ .- ..
T Consensus 245 gHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~----~~--~~ 317 (480)
T KOG0271|consen 245 GHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRK----PK--SF 317 (480)
T ss_pred cCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccccccc----CC--Ch
Confidence 33333333334323 4556777889999999887764 3343222211 1112244455554 11 00
Q ss_pred cCccee-------------eeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCE
Q 003363 319 SSETRK-------------LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF 385 (826)
Q Consensus 319 ~~~~~~-------------~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~ 385 (826)
+...++ ..+.-+ ..+..+|.++... ....+.+++.+..-+....|||||++
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSg-sDd~tlflW~p~~---------------~kkpi~rmtgHq~lVn~V~fSPd~r~ 381 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSG-SDDFTLFLWNPFK---------------SKKPITRMTGHQALVNHVSFSPDGRY 381 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEe-cCCceEEEecccc---------------cccchhhhhchhhheeeEEECCCccE
Confidence 000000 000001 1234788887521 33456788998888999999999999
Q ss_pred EEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC
Q 003363 386 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 465 (826)
Q Consensus 386 l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~ 465 (826)
||-.|-+. .+.+||-.+|+-.....+. -..++.++||.|.+ |+++.+.+
T Consensus 382 IASaSFDk-----------SVkLW~g~tGk~lasfRGH-------------------v~~VYqvawsaDsR-LlVS~SkD 430 (480)
T KOG0271|consen 382 IASASFDK-----------SVKLWDGRTGKFLASFRGH-------------------VAAVYQVAWSADSR-LLVSGSKD 430 (480)
T ss_pred EEEeeccc-----------ceeeeeCCCcchhhhhhhc-------------------cceeEEEEeccCcc-EEEEcCCC
Confidence 99887653 4778887776653222111 12345789999987 66776666
Q ss_pred CeEEEEEEECCCCcEEEecCC-CCCeeeEEEeecCCEEE
Q 003363 466 SSQVIISVNVSSGELLRITPA-ESNFSWSLLTLDGDNII 503 (826)
Q Consensus 466 ~~~~l~~vdl~tg~~~~lt~~-~~~~~~~~~s~dg~~l~ 503 (826)
.+..+|.+ .++++..=.++ ...+....|+|||..+.
T Consensus 431 sTLKvw~V--~tkKl~~DLpGh~DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 431 STLKVWDV--RTKKLKQDLPGHADEVFAVDWSPDGQRVA 467 (480)
T ss_pred ceEEEEEe--eeeeecccCCCCCceEEEEEecCCCceee
Confidence 66666655 46666654443 33566678999998654
|
|
| >TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.9e-14 Score=150.98 Aligned_cols=236 Identities=13% Similarity=0.157 Sum_probs=141.6
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCC---CCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchH
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHS---VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~---~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~ 652 (826)
+..+.|.|... ...+.| ||++||-... .....+...+.+|+++||.|+++|+||. |.+.. .........
T Consensus 48 ~~l~~~~~~~~-~~~~~p-vl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~---g~s~~---~~~~~d~~~ 119 (350)
T TIGR01836 48 VVLYRYTPVKD-NTHKTP-LLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYP---DRADR---YLTLDDYIN 119 (350)
T ss_pred EEEEEecCCCC-cCCCCc-EEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCC---CHHHh---cCCHHHHHH
Confidence 44556666421 122334 8888983211 1122345688899999999999999984 33211 111112223
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC-----------------C
Q 003363 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-----------------T 715 (826)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~-----------------~ 715 (826)
+++.++++++.++. +.+++.++|||+||.+++.++..+|+.++++|+.++.++....... .
T Consensus 120 ~~~~~~v~~l~~~~--~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (350)
T TIGR01836 120 GYIDKCVDYICRTS--KLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFETPGNMLSNWARHVDIDLAVDTMG 197 (350)
T ss_pred HHHHHHHHHHHHHh--CCCcccEEEECHHHHHHHHHHHhCchheeeEEEeccccccCCCCchhhhhccccCHHHHHHhcC
Confidence 45788899998873 4578999999999999999999999999999999987764321100 0
Q ss_pred CCCCchhhhh-------------c-------cCc-CCccC-------CCC-CC-hhhH----HHHhhcCc----------
Q 003363 716 DIPDWCYVES-------------Y-------GSK-GKDSF-------TES-PS-VEDL----TRFHSKSP---------- 751 (826)
Q Consensus 716 ~~~~~~~~~~-------------~-------~~~-~~~~~-------~~~-~~-~~~~----~~~~~~sp---------- 751 (826)
.++.+..... + ... ....+ ... +. .... +.+...+.
T Consensus 198 ~~p~~~~~~~f~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~~~~ 277 (350)
T TIGR01836 198 NIPGELLNLTFLMLKPFSLGYQKYVNLVDILEDERKVENFLRMEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVEIGG 277 (350)
T ss_pred CCCHHHHHHHHHhcCcchhhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeEECC
Confidence 0111100000 0 000 00000 000 00 0000 00101111
Q ss_pred -ccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCC-C-CCCCHHHHHHHHHHHHHHH
Q 003363 752 -ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI-E-RPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 752 -~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~-~-~~~~~~~~~~~i~~w~~~~ 824 (826)
...+.++++|+|+++|++|..+|+..+..+++.+.. .+++++++++ ||.. . .++...+++..+.+||.++
T Consensus 278 ~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~~~~~~~~--~~~~~~~~~~-gH~~~~~~~~~~~~v~~~i~~wl~~~ 350 (350)
T TIGR01836 278 RKVDLKNIKMPILNIYAERDHLVPPDASKALNDLVSS--EDYTELSFPG-GHIGIYVSGKAQKEVPPAIGKWLQAR 350 (350)
T ss_pred EEccHHhCCCCeEEEecCCCCcCCHHHHHHHHHHcCC--CCeEEEEcCC-CCEEEEECchhHhhhhHHHHHHHHhC
Confidence 113557889999999999999999999988888754 4577888875 5653 3 3334568999999999864
|
This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates. |
| >PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.3e-15 Score=150.48 Aligned_cols=196 Identities=19% Similarity=0.287 Sum_probs=122.4
Q ss_pred EEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEE
Q 003363 595 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVT 674 (826)
Q Consensus 595 vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~ 674 (826)
||++||.+.. ...|...+..| ++||.|+++|+||.+..... . ......+++..+.+..+++. +..+++.
T Consensus 1 vv~~hG~~~~--~~~~~~~~~~l-~~~~~v~~~d~~G~G~s~~~---~---~~~~~~~~~~~~~l~~~l~~--~~~~~~~ 69 (228)
T PF12697_consen 1 VVFLHGFGGS--SESWDPLAEAL-ARGYRVIAFDLPGHGRSDPP---P---DYSPYSIEDYAEDLAELLDA--LGIKKVI 69 (228)
T ss_dssp EEEE-STTTT--GGGGHHHHHHH-HTTSEEEEEECTTSTTSSSH---S---SGSGGSHHHHHHHHHHHHHH--TTTSSEE
T ss_pred eEEECCCCCC--HHHHHHHHHHH-hCCCEEEEEecCCccccccc---c---ccCCcchhhhhhhhhhcccc--ccccccc
Confidence 7999997765 46788888888 48999999999995443221 1 12233456666666666665 3347899
Q ss_pred EEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhcc----C---CCCCCch--hhhhccCcCCccCCCCCCh-----
Q 003363 675 VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG----T---TDIPDWC--YVESYGSKGKDSFTESPSV----- 740 (826)
Q Consensus 675 l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~----~---~~~~~~~--~~~~~~~~~~~~~~~~~~~----- 740 (826)
++|||+||.+++.++.++|++++++|+.+|......... . .....+. ....+..............
T Consensus 70 lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (228)
T PF12697_consen 70 LVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLIR 149 (228)
T ss_dssp EEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccceeecccccccccccccccchhhhhhhhcccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999875322110 0 0000000 0000000000000000000
Q ss_pred ---hhHHH-----HhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCC
Q 003363 741 ---EDLTR-----FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 805 (826)
Q Consensus 741 ---~~~~~-----~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 805 (826)
+.... ....+....+.++++|+++++|++|..++.+...++.+.+. .++++++|++||.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~ 218 (228)
T PF12697_consen 150 SSRRALAEYLRSNLWQADLSEALPRIKVPVLVIHGEDDPIVPPESAEELADKLP----NAELVVIPGAGHFLF 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGSSSEEEEEEETTSSSSHHHHHHHHHHHST----TEEEEEETTSSSTHH
T ss_pred ccccccccccccccccccccccccccCCCeEEeecCCCCCCCHHHHHHHHHHCC----CCEEEEECCCCCccH
Confidence 00000 11223335567889999999999999998777766666554 489999999999865
|
... |
| >PRK07581 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.9e-14 Score=153.44 Aligned_cols=224 Identities=14% Similarity=0.080 Sum_probs=128.5
Q ss_pred CCcEEEEEcCCCCCCCCccchHHH---HHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC-----cch-HHHHHHHHHH
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSL---AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG-----SQD-VNDVLTAIDH 661 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~---~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~-----~~~-~~D~~~~i~~ 661 (826)
+.|+||++||+++.. ..+...+ ..|...+|.|+++|+||.+.+.... .....+. ... .+|+.+....
T Consensus 40 ~~~~vll~~~~~~~~--~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (339)
T PRK07581 40 KDNAILYPTWYSGTH--QDNEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPS--NTPAPFNAARFPHVTIYDNVRAQHRL 115 (339)
T ss_pred CCCEEEEeCCCCCCc--ccchhhccCCCccCcCceEEEEecCCCCCCCCCCC--CCCCCCCCCCCCceeHHHHHHHHHHH
Confidence 457777777755432 2232222 2565678999999999954432111 0000111 112 3455544444
Q ss_pred HHHcCCCCCCcE-EEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh------------hccCCCCC-Cch------
Q 003363 662 VIDMGLANPSKV-TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL------------MVGTTDIP-DWC------ 721 (826)
Q Consensus 662 l~~~~~~d~~rv-~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~------------~~~~~~~~-~~~------ 721 (826)
+.+. +..+++ .|+||||||++++.++.++|++++++|+.++...... +....... .|.
T Consensus 116 l~~~--lgi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 193 (339)
T PRK07581 116 LTEK--FGIERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGTAKTTPHNFVFLEGLKAALTADPAFNGGWYAEPPER 193 (339)
T ss_pred HHHH--hCCCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCcHHH
Confidence 5554 334784 7999999999999999999999999998865432100 00000000 000
Q ss_pred -------------hhhhccC-cCCcc----------------CCCCCChhhHHH----Hhh----------cCcccccCC
Q 003363 722 -------------YVESYGS-KGKDS----------------FTESPSVEDLTR----FHS----------KSPISHISK 757 (826)
Q Consensus 722 -------------~~~~~~~-~~~~~----------------~~~~~~~~~~~~----~~~----------~sp~~~~~~ 757 (826)
+...+.. ..... ............ +.. .+....+.+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~L~~ 273 (339)
T PRK07581 194 GLRAHARVYAGWGFSQAFYRQELWRAMGYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQRGDISRNPAYGGDLAAALGS 273 (339)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhhccccChhhHHHHHHHHHHHhhcccCcccHHHHHHHhhhcccccCcccCCCHHHHHhc
Confidence 0000000 00000 000000000000 000 011234667
Q ss_pred CCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCC-CCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 758 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN-DVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 758 i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~-~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
+++|+|+++|++|..+|+..++.+.+.+.+ .+++++++ +||.....+.. ++...+.+|+++++
T Consensus 274 I~~PtLvI~G~~D~~~p~~~~~~l~~~ip~----a~l~~i~~~~GH~~~~~~~~-~~~~~~~~~~~~~~ 337 (339)
T PRK07581 274 ITAKTFVMPISTDLYFPPEDCEAEAALIPN----AELRPIESIWGHLAGFGQNP-ADIAFIDAALKELL 337 (339)
T ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHhCCC----CeEEEeCCCCCccccccCcH-HHHHHHHHHHHHHH
Confidence 899999999999999999998888777754 68899999 89977655554 77888999998876
|
|
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.1e-14 Score=153.38 Aligned_cols=212 Identities=16% Similarity=0.208 Sum_probs=129.8
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (826)
+..|.||++||.+.. ...|......|.. +|.|+++|+||.+.+.. ......+.++.+.+..+++. ++
T Consensus 129 ~~~~~vl~~HG~~~~--~~~~~~~~~~l~~-~~~v~~~d~~g~G~s~~--------~~~~~~~~~~~~~~~~~~~~--~~ 195 (371)
T PRK14875 129 GDGTPVVLIHGFGGD--LNNWLFNHAALAA-GRPVIALDLPGHGASSK--------AVGAGSLDELAAAVLAFLDA--LG 195 (371)
T ss_pred CCCCeEEEECCCCCc--cchHHHHHHHHhc-CCEEEEEcCCCCCCCCC--------CCCCCCHHHHHHHHHHHHHh--cC
Confidence 345789999996654 4466666777755 59999999999544321 11123467777777776665 56
Q ss_pred CCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh--------hccCCCCC---CchhhhhccCc-CCc-----
Q 003363 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--------MVGTTDIP---DWCYVESYGSK-GKD----- 732 (826)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~--------~~~~~~~~---~~~~~~~~~~~-~~~----- 732 (826)
..++.|+|||+||.+++.++.++|++++++++.+|...... +....... .+. ...+... ...
T Consensus 196 ~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 274 (371)
T PRK14875 196 IERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAGLGPEINGDYIDGFVAAESRRELKPVL-ELLFADPALVTRQMVE 274 (371)
T ss_pred CccEEEEeechHHHHHHHHHHhCchheeEEEEECcCCcCcccchhHHHHhhcccchhHHHHHH-HHHhcChhhCCHHHHH
Confidence 67899999999999999999999999999998887532110 00000000 000 0000000 000
Q ss_pred ---cCCCCCC-hhhHHHHh---------hcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 003363 733 ---SFTESPS-VEDLTRFH---------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 799 (826)
Q Consensus 733 ---~~~~~~~-~~~~~~~~---------~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~ 799 (826)
.+..... ......+. ..+....+.++++|+|+++|++|..+|+.++..+. ..+++.++++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~vp~~~~~~l~-------~~~~~~~~~~ 347 (371)
T PRK14875 275 DLLKYKRLDGVDDALRALADALFAGGRQRVDLRDRLASLAIPVLVIWGEQDRIIPAAHAQGLP-------DGVAVHVLPG 347 (371)
T ss_pred HHHHHhccccHHHHHHHHHHHhccCcccchhHHHHHhcCCCCEEEEEECCCCccCHHHHhhcc-------CCCeEEEeCC
Confidence 0000000 00000000 01112245678999999999999999988765432 1378889999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 800 DVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 800 ~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+||....... .++...|.+||++
T Consensus 348 ~gH~~~~e~p-~~~~~~i~~fl~~ 370 (371)
T PRK14875 348 AGHMPQMEAA-ADVNRLLAEFLGK 370 (371)
T ss_pred CCCChhhhCH-HHHHHHHHHHhcc
Confidence 9998765544 4677788888865
|
|
| >COG4099 Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-14 Score=138.16 Aligned_cols=176 Identities=19% Similarity=0.143 Sum_probs=126.2
Q ss_pred CCCeeEEEEEEecCCCCCCCCC-cEEEEEcCCCCCCCCccchHHH-------HHHHHCCcEEEEECCCCCCCCchhhhhc
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCD-PLIVVLHGGPHSVSLSSYSKSL-------AFLSSVGYSLLIVNYRGSLGFGEEALQS 642 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~-P~vv~~HGg~~~~~~~~~~~~~-------~~la~~G~~Vl~~d~rG~~g~G~~~~~~ 642 (826)
..|.++.+.+|.|+++++++++ |+|||+||++..... ...... ...-+-++-|++|.|--- +...
T Consensus 169 ~tgneLkYrly~Pkdy~pdkky~PLvlfLHgagq~g~d-n~~~l~sg~gaiawa~pedqcfVlAPQy~~i--f~d~---- 241 (387)
T COG4099 169 STGNELKYRLYTPKDYAPDKKYYPLVLFLHGAGQGGSD-NDKVLSSGIGAIAWAGPEDQCFVLAPQYNPI--FADS---- 241 (387)
T ss_pred ccCceeeEEEecccccCCCCccccEEEEEecCCCCCch-hhhhhhcCccceeeecccCceEEEccccccc--cccc----
Confidence 4578899999999999999998 999999997655322 111111 111234466777765321 1100
Q ss_pred CCCCCCcchHHHHHHHHH-HHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCch
Q 003363 643 LPGKVGSQDVNDVLTAID-HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC 721 (826)
Q Consensus 643 ~~~~~~~~~~~D~~~~i~-~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~ 721 (826)
.+.-........+.++ -+.+++.+|.+||.++|.|+||+.++.++.++||.|+|+++++|--+..
T Consensus 242 --e~~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~v------------ 307 (387)
T COG4099 242 --EEKTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDRV------------ 307 (387)
T ss_pred --ccccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCchh------------
Confidence 0111112444555555 6667888999999999999999999999999999999999888732210
Q ss_pred hhhhccCcCCccCCCCCChhhHHHHhhcCcccccCC-CCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeC
Q 003363 722 YVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK-VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 798 (826)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~-i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p 798 (826)
..++. -++|+-++|+.+|..+|.++++-+++.|+..+.++++..|.
T Consensus 308 -------------------------------~lv~~lk~~piWvfhs~dDkv~Pv~nSrv~y~~lk~~~~kv~Ytaf~ 354 (387)
T COG4099 308 -------------------------------YLVRTLKKAPIWVFHSSDDKVIPVSNSRVLYERLKALDRKVNYTAFL 354 (387)
T ss_pred -------------------------------hhhhhhccCceEEEEecCCCccccCcceeehHHHHhhccccchhhhh
Confidence 11111 24899999999999999999999999999988888877765
|
|
| >TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-13 Score=144.77 Aligned_cols=215 Identities=21% Similarity=0.298 Sum_probs=127.6
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.+.||++||++..... ......+...+|.|+++|+|| +|.+... ........+++.+.+..+++. ++.+
T Consensus 27 ~~~lvllHG~~~~~~~---~~~~~~~~~~~~~vi~~D~~G---~G~S~~~---~~~~~~~~~~~~~dl~~l~~~--l~~~ 95 (306)
T TIGR01249 27 GKPVVFLHGGPGSGTD---PGCRRFFDPETYRIVLFDQRG---CGKSTPH---ACLEENTTWDLVADIEKLREK--LGIK 95 (306)
T ss_pred CCEEEEECCCCCCCCC---HHHHhccCccCCEEEEECCCC---CCCCCCC---CCcccCCHHHHHHHHHHHHHH--cCCC
Confidence 3568999998765321 223344556789999999999 4444211 111123456677777777665 3456
Q ss_pred cEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchh----hhc--cCC------------CCC-Cc---hhhhhcc--
Q 003363 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA----LMV--GTT------------DIP-DW---CYVESYG-- 727 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~----~~~--~~~------------~~~-~~---~~~~~~~-- 727 (826)
++.++||||||.+++.++.++|++++++|+.++..... ... +.. ..+ .. .+...+.
T Consensus 96 ~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (306)
T TIGR01249 96 NWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFLLREKEWSWFYEGGASMIYPDAWQRFMDSIPENERNEQLVNAYHDR 175 (306)
T ss_pred CEEEEEECHHHHHHHHHHHHChHhhhhheeeccccCCHHHHHHHHhcchhhhCHHHHHHHhhhCChhhhhccHHHHHHHH
Confidence 89999999999999999999999999988887643210 000 000 000 00 0000000
Q ss_pred --Cc------------------CCccCCC-------CCC-hhhHHHHh-------h-cC----cccccCCC-CCcEEEEE
Q 003363 728 --SK------------------GKDSFTE-------SPS-VEDLTRFH-------S-KS----PISHISKV-KTPTIFLL 766 (826)
Q Consensus 728 --~~------------------~~~~~~~-------~~~-~~~~~~~~-------~-~s----p~~~~~~i-~~PvLii~ 766 (826)
.. ....... .+. ........ . .+ -...+.++ ++|+|++|
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~lii~ 255 (306)
T TIGR01249 176 LQSGDEETKLAAAKAWVDWESTTLLRPINEIVSTAEDFKFSLAFARLENHYFVNKGFLDVENFILDNISKIRNIPTYIVH 255 (306)
T ss_pred ccCCCHHHHHHHHHHHHHHhChhhcCCCCCccccccchHHHHHHHHHHHhHHHHhchhcCchHHHHhhhhccCCCeEEEe
Confidence 00 0000000 000 00000000 0 00 11234566 58999999
Q ss_pred eCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 767 GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 767 G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
|+.|..+|+..+.++++.+.. .++++++++||....+ +....+.+|+..+|
T Consensus 256 g~~D~~~p~~~~~~~~~~~~~----~~~~~~~~~gH~~~~~----~~~~~i~~~~~~~~ 306 (306)
T TIGR01249 256 GRYDLCCPLQSAWALHKAFPE----AELKVTNNAGHSAFDP----NNLAALVHALETYL 306 (306)
T ss_pred cCCCCCCCHHHHHHHHHhCCC----CEEEEECCCCCCCCCh----HHHHHHHHHHHHhC
Confidence 999999999999888888754 6899999999987533 45577888887764
|
This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members. |
| >COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-13 Score=125.59 Aligned_cols=197 Identities=18% Similarity=0.242 Sum_probs=135.0
Q ss_pred ccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC---CccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCC
Q 003363 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS---LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 645 (826)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~---~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~ 645 (826)
.+|.-..+++.. .|. .....|+.|.+|--|...+ .......+..|.++||.++.+||||-+++..++
T Consensus 9 i~Gp~G~le~~~-~~~---~~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G~f------ 78 (210)
T COG2945 9 INGPAGRLEGRY-EPA---KTPAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRSQGEF------ 78 (210)
T ss_pred ecCCcccceecc-CCC---CCCCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccccCcc------
Confidence 344444566544 444 3567899999987443221 222334566788999999999999987776655
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhh
Q 003363 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 725 (826)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~ 725 (826)
+.|.-+.+|+.++++|+.++. -+.....+.|+|+|+++++.++.+.|+. ...+...|.++..
T Consensus 79 D~GiGE~~Da~aaldW~~~~h-p~s~~~~l~GfSFGa~Ia~~la~r~~e~-~~~is~~p~~~~~---------------- 140 (210)
T COG2945 79 DNGIGELEDAAAALDWLQARH-PDSASCWLAGFSFGAYIAMQLAMRRPEI-LVFISILPPINAY---------------- 140 (210)
T ss_pred cCCcchHHHHHHHHHHHHhhC-CCchhhhhcccchHHHHHHHHHHhcccc-cceeeccCCCCch----------------
Confidence 445567999999999999874 2333357999999999999999988753 3344444443310
Q ss_pred ccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCC
Q 003363 726 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 805 (826)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 805 (826)
. ...+....+|.|+++|+.|+++++....+.++. .+.+++++++++|.|.
T Consensus 141 -------------------d------fs~l~P~P~~~lvi~g~~Ddvv~l~~~l~~~~~-----~~~~~i~i~~a~HFF~ 190 (210)
T COG2945 141 -------------------D------FSFLAPCPSPGLVIQGDADDVVDLVAVLKWQES-----IKITVITIPGADHFFH 190 (210)
T ss_pred -------------------h------hhhccCCCCCceeEecChhhhhcHHHHHHhhcC-----CCCceEEecCCCceec
Confidence 0 012233457999999999999887776666554 4578899999999886
Q ss_pred CCCCHHHHHHHHHHHH-HHHc
Q 003363 806 RPQSDFESFLNIGLWF-KKYC 825 (826)
Q Consensus 806 ~~~~~~~~~~~i~~w~-~~~l 825 (826)
.. .....+.+.+|+ .+.+
T Consensus 191 gK--l~~l~~~i~~~l~~r~l 209 (210)
T COG2945 191 GK--LIELRDTIADFLEDRRL 209 (210)
T ss_pred cc--HHHHHHHHHHHhhcccc
Confidence 43 235667788888 3443
|
|
| >PLN02578 hydrolase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-13 Score=148.61 Aligned_cols=210 Identities=17% Similarity=0.156 Sum_probs=124.2
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcc-hHHHHHHHHHHHHHcCCCCCC
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ-DVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~-~~~D~~~~i~~l~~~~~~d~~ 671 (826)
|.||++||.+.. ...|...+..|+ .+|.|+++|+||.+.+.... ..+... ..+|+.+.++.+ ..+
T Consensus 87 ~~vvliHG~~~~--~~~w~~~~~~l~-~~~~v~~~D~~G~G~S~~~~-----~~~~~~~~a~~l~~~i~~~------~~~ 152 (354)
T PLN02578 87 LPIVLIHGFGAS--AFHWRYNIPELA-KKYKVYALDLLGFGWSDKAL-----IEYDAMVWRDQVADFVKEV------VKE 152 (354)
T ss_pred CeEEEECCCCCC--HHHHHHHHHHHh-cCCEEEEECCCCCCCCCCcc-----cccCHHHHHHHHHHHHHHh------ccC
Confidence 568999996554 446666677775 46999999999955443221 111111 123444444433 246
Q ss_pred cEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC--------CCCCCchhhhhc---------------cC
Q 003363 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT--------TDIPDWCYVESY---------------GS 728 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~--------~~~~~~~~~~~~---------------~~ 728 (826)
++.++|||+||++++.++.++|++++++|++++...+...... .....+...... ..
T Consensus 153 ~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (354)
T PLN02578 153 PAVLVGNSLGGFTALSTAVGYPELVAGVALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVLGFLFWQAK 232 (354)
T ss_pred CeEEEEECHHHHHHHHHHHhChHhcceEEEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999988764321100000 000000000000 00
Q ss_pred --c----C-CccCCC-----------------CCC-hhh-HH---HHh----hcCcccccCCCCCcEEEEEeCCCCCCCc
Q 003363 729 --K----G-KDSFTE-----------------SPS-VED-LT---RFH----SKSPISHISKVKTPTIFLLGAQDLRVPV 775 (826)
Q Consensus 729 --~----~-~~~~~~-----------------~~~-~~~-~~---~~~----~~sp~~~~~~i~~PvLii~G~~D~~vp~ 775 (826)
. . ...+.. .+. .+. .. .+. .......+.++++|+|+++|++|..+|.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~v~~ 312 (354)
T PLN02578 233 QPSRIESVLKSVYKDKSNVDDYLVESITEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDPWVGP 312 (354)
T ss_pred CHHHHHHHHHHhcCCcccCCHHHHHHHHhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCCCCCH
Confidence 0 0 000000 000 000 00 000 1112234677899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 776 SNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 776 ~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
..+.++.+.+.+ .+++++ ++||....... .++.+.|.+|++
T Consensus 313 ~~~~~l~~~~p~----a~l~~i-~~GH~~~~e~p-~~~~~~I~~fl~ 353 (354)
T PLN02578 313 AKAEKIKAFYPD----TTLVNL-QAGHCPHDEVP-EQVNKALLEWLS 353 (354)
T ss_pred HHHHHHHHhCCC----CEEEEe-CCCCCccccCH-HHHHHHHHHHHh
Confidence 998888777654 577777 58998765544 478889999985
|
|
| >PRK06489 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.7e-14 Score=152.08 Aligned_cols=221 Identities=19% Similarity=0.240 Sum_probs=127.0
Q ss_pred CcEEEEEcCCCCCCCCccch--HHHHHH-------HHCCcEEEEECCCCCCCCchhhhhcCC--CCCCcchHHHHHHHH-
Q 003363 592 DPLIVVLHGGPHSVSLSSYS--KSLAFL-------SSVGYSLLIVNYRGSLGFGEEALQSLP--GKVGSQDVNDVLTAI- 659 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~--~~~~~l-------a~~G~~Vl~~d~rG~~g~G~~~~~~~~--~~~~~~~~~D~~~~i- 659 (826)
.|.||++||++.+. ..|. .....| ..++|.|+++|+||.| .+...... .......++++.+.+
T Consensus 69 gpplvllHG~~~~~--~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG---~S~~p~~~~~~~~~~~~~~~~a~~~~ 143 (360)
T PRK06489 69 DNAVLVLHGTGGSG--KSFLSPTFAGELFGPGQPLDASKYFIILPDGIGHG---KSSKPSDGLRAAFPRYDYDDMVEAQY 143 (360)
T ss_pred CCeEEEeCCCCCch--hhhccchhHHHhcCCCCcccccCCEEEEeCCCCCC---CCCCCCcCCCCCCCcccHHHHHHHHH
Confidence 57899999977542 2232 222222 2578999999999954 33211000 001123456665443
Q ss_pred HHHHHcCCCCCCcEE-EEEecchHHHHHHHHHhCCCceeEEEecCCccch--------hhh-c-cCCCCCCc--------
Q 003363 660 DHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL--------ALM-V-GTTDIPDW-------- 720 (826)
Q Consensus 660 ~~l~~~~~~d~~rv~-l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~--------~~~-~-~~~~~~~~-------- 720 (826)
..+.+. ++.+++. |+||||||++++.++.++|++++++|++++.... ... . .......|
T Consensus 144 ~~l~~~--lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (360)
T PRK06489 144 RLVTEG--LGVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQPTEMSGRNWMWRRMLIESIRNDPAWNNGNYTTQ 221 (360)
T ss_pred HHHHHh--cCCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccCcccccHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 334444 3346775 8999999999999999999999999988764210 000 0 00000000
Q ss_pred --h------hhh--------hccC-cCC----c-c----CC--CCCChhhH----HHHhhcCcccccCCCCCcEEEEEeC
Q 003363 721 --C------YVE--------SYGS-KGK----D-S----FT--ESPSVEDL----TRFHSKSPISHISKVKTPTIFLLGA 768 (826)
Q Consensus 721 --~------~~~--------~~~~-~~~----~-~----~~--~~~~~~~~----~~~~~~sp~~~~~~i~~PvLii~G~ 768 (826)
. ... .+.. ... . . +. ........ ......+....+.+|++|+|+++|+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~I~~PvLvI~G~ 301 (360)
T PRK06489 222 PPSLKRANPMFAIATSGGTLAYQAQAPTRAAADKLVDERLAAPVTADANDFLYQWDSSRDYNPSPDLEKIKAPVLAINSA 301 (360)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHhcCChHHHHHHHHHHHHhhhhcCHHHHHHHHHHhhccChHHHHHhCCCCEEEEecC
Confidence 0 000 0000 000 0 0 00 00000000 0001122334567899999999999
Q ss_pred CCCCCCcHHH--HHHHHHHHhCCCCEEEEEeCCC----CCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 769 QDLRVPVSNG--LQYARALREKGVETKVIVFPND----VHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 769 ~D~~vp~~~~--~~~~~~l~~~g~~~~~~~~p~~----~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
+|..+|++.+ +.+.+.+.+ .+++++|++ ||... +....+.+.+.+||+++-
T Consensus 302 ~D~~~p~~~~~~~~la~~ip~----a~l~~i~~a~~~~GH~~~--e~P~~~~~~i~~FL~~~~ 358 (360)
T PRK06489 302 DDERNPPETGVMEAALKRVKH----GRLVLIPASPETRGHGTT--GSAKFWKAYLAEFLAQVP 358 (360)
T ss_pred CCcccChhhHHHHHHHHhCcC----CeEEEECCCCCCCCcccc--cCHHHHHHHHHHHHHhcc
Confidence 9999998876 566666654 689999996 99874 456688889999998753
|
|
| >PLN00021 chlorophyllase | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.4e-13 Score=140.81 Aligned_cols=182 Identities=20% Similarity=0.222 Sum_probs=124.4
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHH
Q 003363 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653 (826)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~ 653 (826)
.++.+.++.|. ..+++|+||++||+... ...|...+..|+++||.|+++|++|..+. ....+++
T Consensus 37 ~~~p~~v~~P~---~~g~~PvVv~lHG~~~~--~~~y~~l~~~Las~G~~VvapD~~g~~~~-----------~~~~~i~ 100 (313)
T PLN00021 37 PPKPLLVATPS---EAGTYPVLLFLHGYLLY--NSFYSQLLQHIASHGFIVVAPQLYTLAGP-----------DGTDEIK 100 (313)
T ss_pred CCceEEEEeCC---CCCCCCEEEEECCCCCC--cccHHHHHHHHHhCCCEEEEecCCCcCCC-----------CchhhHH
Confidence 45778899997 46789999999997654 44677788899999999999999873211 0122456
Q ss_pred HHHHHHHHHHHc--------CCCCCCcEEEEEecchHHHHHHHHHhCCC-----ceeEEEecCCccchhhhccCCCCCCc
Q 003363 654 DVLTAIDHVIDM--------GLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDW 720 (826)
Q Consensus 654 D~~~~i~~l~~~--------~~~d~~rv~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~p~~~~~~~~~~~~~~~~ 720 (826)
|..++++|+.+. ..+|.++++|+|||+||.+++.++..+++ .++++|...|+....... ..
T Consensus 101 d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~~~~~-~~----- 174 (313)
T PLN00021 101 DAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGTSKGK-QT----- 174 (313)
T ss_pred HHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccccccc-CC-----
Confidence 677777777652 23677899999999999999999998874 578888888875421100 00
Q ss_pred hhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCC-----C----CCcHH-HHHHHHHHHhCCC
Q 003363 721 CYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL-----R----VPVSN-GLQYARALREKGV 790 (826)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~-----~----vp~~~-~~~~~~~l~~~g~ 790 (826)
.+.. ....+ ..-++..|+|++++..|. . .|... -.+++++.+.
T Consensus 175 ----------------~p~i------l~~~~--~s~~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~~~--- 227 (313)
T PLN00021 175 ----------------PPPV------LTYAP--HSFNLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNECKA--- 227 (313)
T ss_pred ----------------CCcc------cccCc--ccccCCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhcCC---
Confidence 0000 00011 112367999999999763 2 22332 3567766653
Q ss_pred CEEEEEeCCCCCCC
Q 003363 791 ETKVIVFPNDVHGI 804 (826)
Q Consensus 791 ~~~~~~~p~~~H~~ 804 (826)
+..+.+.++++|.-
T Consensus 228 ~~~~~~~~~~gH~~ 241 (313)
T PLN00021 228 PAVHFVAKDYGHMD 241 (313)
T ss_pred CeeeeeecCCCcce
Confidence 68888999999963
|
|
| >TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-13 Score=148.99 Aligned_cols=244 Identities=16% Similarity=0.190 Sum_probs=139.8
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc---------cchHHH---HHHHHCCcEEEEECCCCC-CCC-chh
Q 003363 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS---------SYSKSL---AFLSSVGYSLLIVNYRGS-LGF-GEE 638 (826)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~---------~~~~~~---~~la~~G~~Vl~~d~rG~-~g~-G~~ 638 (826)
|..+++..+-+++ ....|.||++||...+.... .|...+ ..|...+|.|+++|+||. +|. +.+
T Consensus 15 ~~~~~y~~~g~~~---~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~~ 91 (351)
T TIGR01392 15 DVRVAYETYGTLN---AERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTGPS 91 (351)
T ss_pred CceEEEEeccccC---CCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCCCC
Confidence 4556665554431 12347899999965532111 233332 255578999999999993 222 211
Q ss_pred hhhc----CCCCCCcchHHHHHHHHHHHHHcCCCCCCc-EEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh---
Q 003363 639 ALQS----LPGKVGSQDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--- 710 (826)
Q Consensus 639 ~~~~----~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r-v~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~--- 710 (826)
.... ...+.....++|+.+.+..+++.- ..++ +.|+||||||.+++.++.++|++++++|+.++......
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~ 169 (351)
T TIGR01392 92 SINPGGRPYGSDFPLITIRDDVKAQKLLLDHL--GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSARHSAWCI 169 (351)
T ss_pred CCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCCcCCHHHH
Confidence 1000 000112345777777777776653 4467 99999999999999999999999999999887542110
Q ss_pred -h-------cc-CCC-----C-----CCchhh--hh-----ccC-c-CCccCCCC------C--------ChhhH-----
Q 003363 711 -M-------VG-TTD-----I-----PDWCYV--ES-----YGS-K-GKDSFTES------P--------SVEDL----- 743 (826)
Q Consensus 711 -~-------~~-~~~-----~-----~~~~~~--~~-----~~~-~-~~~~~~~~------~--------~~~~~----- 743 (826)
. .. ... . +.+.+. .. +.. . ....+... + ..+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (351)
T TIGR01392 170 AFNEVQRQAILADPNWNDGDYYEDGQPDRGLALARMLAHLTYRSEESMAERFGRAPQSGESPASGFDTRFQVESYLRYQG 249 (351)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCChhhHHHHHHHHHHHhcCCHHHHHHHhCcCcccccccccccCccchHHHHHHHHH
Confidence 0 00 000 0 000000 00 000 0 00000000 0 00000
Q ss_pred ----------------HHHhhcCc-------ccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEE-eCC
Q 003363 744 ----------------TRFHSKSP-------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV-FPN 799 (826)
Q Consensus 744 ----------------~~~~~~sp-------~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~-~p~ 799 (826)
..+...+. ...+.+|++|+|+|+|++|..+|+..++++.+.+.+....++++. +++
T Consensus 250 ~~~~~~~d~~~~~~~~~~l~~~d~~~~~~~~~~~l~~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~~i~~~ 329 (351)
T TIGR01392 250 DKFVDRFDANSYLYLTRALDTHDLGRGRGSLTEALSRIKAPFLVVSITSDWLFPPAESRELAKALPAAGLRVTYVEIESP 329 (351)
T ss_pred HHHHhhcCcchHHHHHHHHHhcCCcCCCCCHHHHHhhCCCCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEEEeCCC
Confidence 01111111 234668899999999999999999999999999987544444444 468
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHH
Q 003363 800 DVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 800 ~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
+||.....+ ..++.+.+.+||+
T Consensus 330 ~GH~~~le~-p~~~~~~l~~FL~ 351 (351)
T TIGR01392 330 YGHDAFLVE-TDQVEELIRGFLR 351 (351)
T ss_pred CCcchhhcC-HHHHHHHHHHHhC
Confidence 999876544 4477778888864
|
This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes. |
| >PRK00175 metX homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-13 Score=148.40 Aligned_cols=231 Identities=15% Similarity=0.188 Sum_probs=138.1
Q ss_pred CCcEEEEEcCCCCCCCCc-----------cchHHH---HHHHHCCcEEEEECCCCC-CCC-chhhhhc---CC--CCCCc
Q 003363 591 CDPLIVVLHGGPHSVSLS-----------SYSKSL---AFLSSVGYSLLIVNYRGS-LGF-GEEALQS---LP--GKVGS 649 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~-----------~~~~~~---~~la~~G~~Vl~~d~rG~-~g~-G~~~~~~---~~--~~~~~ 649 (826)
..|.||++||.+.+.... .|...+ ..|...+|.|+++|++|. ++. +.+.... .+ .....
T Consensus 47 ~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~~ 126 (379)
T PRK00175 47 RSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPV 126 (379)
T ss_pred CCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCc
Confidence 358999999976553210 133332 133356899999999983 222 1111000 00 01123
Q ss_pred chHHHHHHHHHHHHHcCCCCCCc-EEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh---------ccCCCCCC
Q 003363 650 QDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM---------VGTTDIPD 719 (826)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~r-v~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~---------~~~~~~~~ 719 (826)
..++++.+.+..+++. ++.++ +.++||||||.+++.++.++|++++++|++++....... ......+.
T Consensus 127 ~~~~~~~~~~~~~l~~--l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~i~~~~~ 204 (379)
T PRK00175 127 ITIRDWVRAQARLLDA--LGITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSARLSAQNIAFNEVARQAILADPD 204 (379)
T ss_pred CCHHHHHHHHHHHHHH--hCCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCcccCHHHHHHHHHHHHHHHhCCC
Confidence 4577777777777766 34467 589999999999999999999999999998864321100 00000000
Q ss_pred ch-------------------------------hhhhccCcCCccC-----CCCCChhhH--------------------
Q 003363 720 WC-------------------------------YVESYGSKGKDSF-----TESPSVEDL-------------------- 743 (826)
Q Consensus 720 ~~-------------------------------~~~~~~~~~~~~~-----~~~~~~~~~-------------------- 743 (826)
|. +...+........ ......+..
T Consensus 205 ~~~g~~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~ 284 (379)
T PRK00175 205 WHGGDYYEHGVVPERGLAVARMIGHITYLSDDELDEKFGRELQSGELPFGFDVEFQVESYLRYQGDKFVERFDANSYLYL 284 (379)
T ss_pred CCCCCcccCCCChhHHHHHHHHHHHHHhcCHHHHHhhcCccccccccccCCCccchHHHHHHHHHHHHhhccCchHHHHH
Confidence 00 0000100000000 000000000
Q ss_pred -HHHhhcC--------cccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeC-CCCCCCCCCCCHHHH
Q 003363 744 -TRFHSKS--------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP-NDVHGIERPQSDFES 813 (826)
Q Consensus 744 -~~~~~~s--------p~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p-~~~H~~~~~~~~~~~ 813 (826)
..+...+ -...+.+|++|+|+|+|+.|..+|++.++++.+.+...+..+++++++ ++||.....+.. ++
T Consensus 285 ~~~~~~~d~~~~~~~d~~~~l~~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~~le~p~-~~ 363 (379)
T PRK00175 285 TRALDYFDPARGRGGDLAAALARIKARFLVVSFTSDWLFPPARSREIVDALLAAGADVSYAEIDSPYGHDAFLLDDP-RY 363 (379)
T ss_pred HHHHHhccccCCCCCCHHHHHhcCCCCEEEEEECCccccCHHHHHHHHHHHHhcCCCeEEEEeCCCCCchhHhcCHH-HH
Confidence 0000111 123457889999999999999999999999999998877777888885 899987655544 78
Q ss_pred HHHHHHHHHHH
Q 003363 814 FLNIGLWFKKY 824 (826)
Q Consensus 814 ~~~i~~w~~~~ 824 (826)
...+.+||.+.
T Consensus 364 ~~~L~~FL~~~ 374 (379)
T PRK00175 364 GRLVRAFLERA 374 (379)
T ss_pred HHHHHHHHHhh
Confidence 89999999864
|
|
| >KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.9e-13 Score=135.58 Aligned_cols=221 Identities=18% Similarity=0.275 Sum_probs=133.5
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (826)
...+.+|++||.+.+ ...|-.....|+. ...|.++|..| +|++.+.....+.... ...+.+.++.-... ..
T Consensus 88 ~~~~plVliHGyGAg--~g~f~~Nf~~La~-~~~vyaiDllG---~G~SSRP~F~~d~~~~-e~~fvesiE~WR~~--~~ 158 (365)
T KOG4409|consen 88 ANKTPLVLIHGYGAG--LGLFFRNFDDLAK-IRNVYAIDLLG---FGRSSRPKFSIDPTTA-EKEFVESIEQWRKK--MG 158 (365)
T ss_pred cCCCcEEEEeccchh--HHHHHHhhhhhhh-cCceEEecccC---CCCCCCCCCCCCcccc-hHHHHHHHHHHHHH--cC
Confidence 445668899995543 4456667777777 79999999999 7776655554443222 33444444433333 22
Q ss_pred CCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh----ccCCCCCCchh-----------------hhhccC
Q 003363 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM----VGTTDIPDWCY-----------------VESYGS 728 (826)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~----~~~~~~~~~~~-----------------~~~~~~ 728 (826)
.+++.|+|||+|||+++.+|.+||++++.+|+.+|.--.... ......+.|.. +..+|.
T Consensus 159 L~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~~LR~~Gp~Gp 238 (365)
T KOG4409|consen 159 LEKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLALLRLMGPLGP 238 (365)
T ss_pred CcceeEeeccchHHHHHHHHHhChHhhceEEEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHHHHHhccccch
Confidence 468999999999999999999999999999999986322211 00111112210 001111
Q ss_pred cCCc-----cCCCCC---ChhhHHHHh-----------------------hcCc-ccccCCCC--CcEEEEEeCCCCCCC
Q 003363 729 KGKD-----SFTESP---SVEDLTRFH-----------------------SKSP-ISHISKVK--TPTIFLLGAQDLRVP 774 (826)
Q Consensus 729 ~~~~-----~~~~~~---~~~~~~~~~-----------------------~~sp-~~~~~~i~--~PvLii~G~~D~~vp 774 (826)
.... ++...+ ..+....|. ...| +..+..++ +|+++|+|++|-+ .
T Consensus 239 ~Lv~~~~~d~~~k~~~~~~ed~l~~YiY~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~pv~fiyG~~dWm-D 317 (365)
T KOG4409|consen 239 KLVSRLRPDRFRKFPSLIEEDFLHEYIYHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVPVTFIYGDRDWM-D 317 (365)
T ss_pred HHHhhhhHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCCEEEEecCcccc-c
Confidence 0000 011111 111101110 1122 23345555 9999999999964 5
Q ss_pred cHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 775 VSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 775 ~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
...+.++.+.+. ...++.+++|++||.....+.. .+.+.+..++++
T Consensus 318 ~~~g~~~~~~~~--~~~~~~~~v~~aGHhvylDnp~-~Fn~~v~~~~~~ 363 (365)
T KOG4409|consen 318 KNAGLEVTKSLM--KEYVEIIIVPGAGHHVYLDNPE-FFNQIVLEECDK 363 (365)
T ss_pred chhHHHHHHHhh--cccceEEEecCCCceeecCCHH-HHHHHHHHHHhc
Confidence 566677766653 2458999999999987655543 677777777765
|
|
| >PF10503 Esterase_phd: Esterase PHB depolymerase | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=134.55 Aligned_cols=191 Identities=20% Similarity=0.169 Sum_probs=119.6
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH---HHHHHHHCCcEEEEECCCCCCCCch--hhhhcCCCCCCcch
Q 003363 577 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGE--EALQSLPGKVGSQD 651 (826)
Q Consensus 577 ~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vl~~d~rG~~g~G~--~~~~~~~~~~~~~~ 651 (826)
.+.+|.|++. +..+.|+||++||..... ..+.. +.+...++||+|+.|+-........ .|.. .....+..+
T Consensus 2 ~Y~lYvP~~~-~~~~~PLVv~LHG~~~~a--~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~-~~~~~g~~d 77 (220)
T PF10503_consen 2 SYRLYVPPGA-PRGPVPLVVVLHGCGQSA--EDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFS-DDQQRGGGD 77 (220)
T ss_pred cEEEecCCCC-CCCCCCEEEEeCCCCCCH--HHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccc-cccccCccc
Confidence 4578899864 335789999999976542 22222 2233346899999998543211112 2211 112233446
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCC
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 731 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (826)
...+.+.++++.++..+|++||.+.|+|.||.|+..+++.+||+|.++...+++.--... +.... ...+..
T Consensus 78 ~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~----~~~~a--~~~m~~--- 148 (220)
T PF10503_consen 78 VAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAA----SGASA--LSAMRS--- 148 (220)
T ss_pred hhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeeccccccccc----CcccH--HHHhhC---
Confidence 777888899999998899999999999999999999999999999999888775321100 00000 000000
Q ss_pred ccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHh
Q 003363 732 DSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE 787 (826)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~ 787 (826)
...+............. .. -..|++++||+.|..|.+.++.++.+.+..
T Consensus 149 ---g~~~~p~~~~~a~~~~g--~~--~~~P~~v~hG~~D~tV~~~n~~~~~~q~~~ 197 (220)
T PF10503_consen 149 ---GPRPAPAAAWGARSDAG--AY--PGYPRIVFHGTADTTVNPQNADQLVAQWLN 197 (220)
T ss_pred ---CCCCChHHHHHhhhhcc--CC--CCCCEEEEecCCCCccCcchHHHHHHHHHH
Confidence 00011111111111110 11 125999999999999999999998888765
|
|
| >KOG4667 consensus Predicted esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-13 Score=125.78 Aligned_cols=208 Identities=16% Similarity=0.183 Sum_probs=135.0
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCC
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (826)
.+..-++|++||.-...........+..|++.||.++.+|++|.+++..++. ++ .+..+++|+..+++++...
T Consensus 30 tgs~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~---~G-n~~~eadDL~sV~q~~s~~--- 102 (269)
T KOG4667|consen 30 TGSTEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFY---YG-NYNTEADDLHSVIQYFSNS--- 102 (269)
T ss_pred cCCceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCccc---cC-cccchHHHHHHHHHHhccC---
Confidence 3456789999996544322233446778899999999999999777665552 22 3344679999999998653
Q ss_pred CCCcE--EEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCC---CCCCchhhhhccCcC--CccCCCCCChh
Q 003363 669 NPSKV--TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT---DIPDWCYVESYGSKG--KDSFTESPSVE 741 (826)
Q Consensus 669 d~~rv--~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~ 741 (826)
+|+ .|+|||-||-+++.++.++++ +.-++..++-++........ +...|....-+-... ...+......+
T Consensus 103 --nr~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~eRlg~~~l~~ike~Gfid~~~rkG~y~~rvt~e 179 (269)
T KOG4667|consen 103 --NRVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGINERLGEDYLERIKEQGFIDVGPRKGKYGYRVTEE 179 (269)
T ss_pred --ceEEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchhhhhcccHHHHHHhCCceecCcccCCcCceecHH
Confidence 343 599999999999999999887 66777777777665443211 111111110000000 00011111112
Q ss_pred hHHHHhhcCcccccCCC--CCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCH
Q 003363 742 DLTRFHSKSPISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD 810 (826)
Q Consensus 742 ~~~~~~~~sp~~~~~~i--~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~ 810 (826)
........+-.....+| +||+|-+||..|.+||.+.+.++++.++. .++.++||++|.+...+..
T Consensus 180 SlmdrLntd~h~aclkId~~C~VLTvhGs~D~IVPve~AkefAk~i~n----H~L~iIEgADHnyt~~q~~ 246 (269)
T KOG4667|consen 180 SLMDRLNTDIHEACLKIDKQCRVLTVHGSEDEIVPVEDAKEFAKIIPN----HKLEIIEGADHNYTGHQSQ 246 (269)
T ss_pred HHHHHHhchhhhhhcCcCccCceEEEeccCCceeechhHHHHHHhccC----CceEEecCCCcCccchhhh
Confidence 22222222222222223 69999999999999999999999999987 6899999999999865543
|
|
| >PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.4e-13 Score=138.75 Aligned_cols=205 Identities=18% Similarity=0.184 Sum_probs=120.0
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCc
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 672 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 672 (826)
|.||++||.+.+ ...|...+..| .+|.|+++|+||.+. +... . ...+++..+.+..++++ .+.++
T Consensus 3 p~vvllHG~~~~--~~~w~~~~~~l--~~~~vi~~D~~G~G~---S~~~---~---~~~~~~~~~~l~~~l~~--~~~~~ 67 (242)
T PRK11126 3 PWLVFLHGLLGS--GQDWQPVGEAL--PDYPRLYIDLPGHGG---SAAI---S---VDGFADVSRLLSQTLQS--YNILP 67 (242)
T ss_pred CEEEEECCCCCC--hHHHHHHHHHc--CCCCEEEecCCCCCC---CCCc---c---ccCHHHHHHHHHHHHHH--cCCCC
Confidence 679999997765 45777777777 379999999999544 3211 1 11355555555555554 24578
Q ss_pred EEEEEecchHHHHHHHHHhCCC-ceeEEEecCCccchhhh----ccCCCCCCchh----------hhh-ccCcCCccCCC
Q 003363 673 VTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPLCNLALM----VGTTDIPDWCY----------VES-YGSKGKDSFTE 736 (826)
Q Consensus 673 v~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~p~~~~~~~----~~~~~~~~~~~----------~~~-~~~~~~~~~~~ 736 (826)
+.++||||||.+++.++.++|+ +++++++.++....... ........|.. ... +.......+..
T Consensus 68 ~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (242)
T PRK11126 68 YWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNPGLQNAEERQARWQNDRQWAQRFRQEPLEQVLADWYQQPVFASLNA 147 (242)
T ss_pred eEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCCCCCCHHHHHHHHhhhHHHHHHhccCcHHHHHHHHHhcchhhccCc
Confidence 9999999999999999999866 49999887754321100 00000000100 000 00000000000
Q ss_pred CC-----------ChhhHHHHh-h------cCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeC
Q 003363 737 SP-----------SVEDLTRFH-S------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 798 (826)
Q Consensus 737 ~~-----------~~~~~~~~~-~------~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p 798 (826)
.. .......+. . .+....+.++++|+|+++|++|..+. .+.+.. ..++++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-----~~~~~~-----~~~~~~i~ 217 (242)
T PRK11126 148 EQRQQLVAKRSNNNGAAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQ-----ALAQQL-----ALPLHVIP 217 (242)
T ss_pred cHHHHHHHhcccCCHHHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHH-----HHHHHh-----cCeEEEeC
Confidence 00 000000010 0 01123467889999999999998541 222221 47899999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 799 NDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 799 ~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
++||.+.... ..++.+.|..||++
T Consensus 218 ~~gH~~~~e~-p~~~~~~i~~fl~~ 241 (242)
T PRK11126 218 NAGHNAHREN-PAAFAASLAQILRL 241 (242)
T ss_pred CCCCchhhhC-hHHHHHHHHHHHhh
Confidence 9999876544 45788889999865
|
|
| >TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.5e-12 Score=130.23 Aligned_cols=220 Identities=11% Similarity=0.061 Sum_probs=134.3
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--CccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCC
Q 003363 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~--~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~ 647 (826)
++....+.++++.|.+ .++.|+||++||.+.... ...|...+..|+++||.|+.+|+||.+...... ....+
T Consensus 6 ~~~~g~~~~~~~~p~~---~~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~~---~~~~~ 79 (266)
T TIGR03101 6 DAPHGFRFCLYHPPVA---VGPRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGDF---AAARW 79 (266)
T ss_pred cCCCCcEEEEEecCCC---CCCceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCcc---ccCCH
Confidence 3344557788888863 345799999999654321 234556778899999999999999954332111 01111
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC----------C-C
Q 003363 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT----------T-D 716 (826)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~----------~-~ 716 (826)
....+|+.++++++.+.+ .++|+|+|||+||.+++.++.++|+.++++|+.+|+.....+... . .
T Consensus 80 -~~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~l~~~lrl~~~~~~~~~ 155 (266)
T TIGR03101 80 -DVWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQLQQFLRLRLVARRLGG 155 (266)
T ss_pred -HHHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHHHHHHHHHHHHHHhccc
Confidence 123688889999987763 478999999999999999999999999999999998764322110 0 0
Q ss_pred CCCc---hhhhhccCcCCccCCCCC-ChhhHHHHhhcCcccccCCCCCcEEEEEeCCC-CCCCcHHHHHHHHHHHhCCCC
Q 003363 717 IPDW---CYVESYGSKGKDSFTESP-SVEDLTRFHSKSPISHISKVKTPTIFLLGAQD-LRVPVSNGLQYARALREKGVE 791 (826)
Q Consensus 717 ~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D-~~vp~~~~~~~~~~l~~~g~~ 791 (826)
.... ...+.......-.+.+.. ..+....+...+....... ..++|++.-..+ ..-......++.+++++.|+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 234 (266)
T TIGR03101 156 ESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVPK-NCPVHWFEVRPEEGATLSPVFSRLGEQWVQSGVE 234 (266)
T ss_pred cccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCCC-CCceEEEEeccccCCCCCHHHHHHHHHHHHcCCe
Confidence 0000 000000000000011111 1222223322222211112 567788766433 223345667899999999999
Q ss_pred EEEEEeCCC
Q 003363 792 TKVIVFPND 800 (826)
Q Consensus 792 ~~~~~~p~~ 800 (826)
++...|+|-
T Consensus 235 v~~~~~~~~ 243 (266)
T TIGR03101 235 VTVDLVPGP 243 (266)
T ss_pred EeeeecCCc
Confidence 999999987
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily. |
| >PLN03084 alpha/beta hydrolase fold protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.7e-13 Score=142.36 Aligned_cols=218 Identities=18% Similarity=0.184 Sum_probs=131.1
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
..|.||++||.+.. ...|...+..|++ +|.|+++|++|. |.+..... .......++++...+..+++. +..
T Consensus 126 ~~~~ivllHG~~~~--~~~w~~~~~~L~~-~~~Via~DlpG~---G~S~~p~~-~~~~~ys~~~~a~~l~~~i~~--l~~ 196 (383)
T PLN03084 126 NNPPVLLIHGFPSQ--AYSYRKVLPVLSK-NYHAIAFDWLGF---GFSDKPQP-GYGFNYTLDEYVSSLESLIDE--LKS 196 (383)
T ss_pred CCCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEECCCCC---CCCCCCcc-cccccCCHHHHHHHHHHHHHH--hCC
Confidence 45789999997754 4577777878864 899999999994 44321110 001123466666666666655 334
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh-----h---ccCCCCCCchh---hh----hc---cC----
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-----M---VGTTDIPDWCY---VE----SY---GS---- 728 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~-----~---~~~~~~~~~~~---~~----~~---~~---- 728 (826)
+++.|+|||+||.+++.++.++|++++++|+.+|...... . ....-...+.. .. .+ ..
T Consensus 197 ~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (383)
T PLN03084 197 DKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFLLGEIFSQDPLRASDKALTSCGPYAMK 276 (383)
T ss_pred CCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHHhhhhhhcchHHHHhhhhcccCccCCC
Confidence 6899999999999999999999999999999998642100 0 00000000000 00 00 00
Q ss_pred -cCCccCCC---CCC--hhhHH-HHhhc--Cc------cc---ccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCC
Q 003363 729 -KGKDSFTE---SPS--VEDLT-RFHSK--SP------IS---HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV 790 (826)
Q Consensus 729 -~~~~~~~~---~~~--~~~~~-~~~~~--sp------~~---~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~ 790 (826)
.....+.. .+. ..... .+... .. +. ...++++|+|+++|+.|..++.+..+++.+..
T Consensus 277 ~e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLiI~G~~D~~v~~~~~~~~a~~~----- 351 (383)
T PLN03084 277 EDDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITVCWGLRDRWLNYDGVEDFCKSS----- 351 (383)
T ss_pred HHHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEEEeeCCCCCcCHHHHHHHHHhc-----
Confidence 00000000 000 00000 00000 00 00 01357899999999999999988877766653
Q ss_pred CEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 791 ETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 791 ~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+.++.++|+++|.+..+ ...++...|.+|+.+
T Consensus 352 ~a~l~vIp~aGH~~~~E-~Pe~v~~~I~~Fl~~ 383 (383)
T PLN03084 352 QHKLIELPMAGHHVQED-CGEELGGIISGILSK 383 (383)
T ss_pred CCeEEEECCCCCCcchh-CHHHHHHHHHHHhhC
Confidence 36889999999987754 445888888888863
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-12 Score=134.29 Aligned_cols=313 Identities=17% Similarity=0.174 Sum_probs=164.9
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003363 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (826)
Q Consensus 102 ~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (826)
+.+++||+++.|..+.. .+.+++++++ ..++.+|||..+- .......+||+++.|+|+.+.. ++
T Consensus 41 ~~ft~dG~kllF~s~~d------g~~nly~lDL--~t~~i~QLTdg~g----~~~~g~~~s~~~~~~~Yv~~~~----~l 104 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFD------GNRNLYLLDL--ATGEITQLTDGPG----DNTFGGFLSPDDRALYYVKNGR----SL 104 (386)
T ss_dssp --B-TTS-EEEEEE-TT------SS-EEEEEET--TT-EEEE---SS-----B-TTT-EE-TTSSEEEEEETTT----EE
T ss_pred CCcCCCCCEEEEEeccC------CCcceEEEEc--ccCEEEECccCCC----CCccceEEecCCCeEEEEECCC----eE
Confidence 45689999999976532 4678888776 5568899998651 1233478899999999987543 68
Q ss_pred EEEe-cCCceeEEEecCCCccccccCCCcccceee--cCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcce
Q 003363 182 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISW--NSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 258 (826)
Q Consensus 182 ~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~w--SPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (826)
+.++ .+.+.+.+..++... .....| ..|+++++.+........+ ...|..
T Consensus 105 ~~vdL~T~e~~~vy~~p~~~---------~g~gt~v~n~d~t~~~g~e~~~~d~~~---------------l~~~~~--- 157 (386)
T PF14583_consen 105 RRVDLDTLEERVVYEVPDDW---------KGYGTWVANSDCTKLVGIEISREDWKP---------------LTKWKG--- 157 (386)
T ss_dssp EEEETTT--EEEEEE--TTE---------EEEEEEEE-TTSSEEEEEEEEGGG--------------------SHHH---
T ss_pred EEEECCcCcEEEEEECCccc---------ccccceeeCCCccEEEEEEEeehhccC---------------ccccHH---
Confidence 8888 566666666666443 233455 5679988887543211100 001110
Q ss_pred eecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceE
Q 003363 259 WEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (826)
Q Consensus 259 ~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~ 338 (826)
| .+.+.......|+.+|+.+|+.+.+ .....-.+++.+||.... ++.-+-+..- ..-+..||
T Consensus 158 f----~e~~~a~p~~~i~~idl~tG~~~~v--~~~~~wlgH~~fsP~dp~----li~fCHEGpw--------~~Vd~RiW 219 (386)
T PF14583_consen 158 F----REFYEARPHCRIFTIDLKTGERKVV--FEDTDWLGHVQFSPTDPT----LIMFCHEGPW--------DLVDQRIW 219 (386)
T ss_dssp H----HHHHHC---EEEEEEETTT--EEEE--EEESS-EEEEEEETTEEE----EEEEEE-S-T--------TTSS-SEE
T ss_pred H----HHHHhhCCCceEEEEECCCCceeEE--EecCccccCcccCCCCCC----EEEEeccCCc--------ceeceEEE
Confidence 0 2233334567899999999999988 566667789999996655 4443333221 11234799
Q ss_pred EEEcccccchhhhhhhhcCCCCCCcceecCCC--CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 339 AVRVSLYKSEASELELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~--~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
.++. +++..+.+... ...+...-|+|||+.|.|.+... | ....-|..+|+.+++.
T Consensus 220 ~i~~-----------------dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~----~--~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 220 TINT-----------------DGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTP----G--GQDFWIAGYDPDTGER 276 (386)
T ss_dssp EEET-----------------TS---EESS---TTEEEEEEEE-TTSS-EEEEEEET----T--T--EEEEEE-TTT--E
T ss_pred EEEc-----------------CCCcceeeecCCCCcccccccccCCCCEEEEEeecC----C--CCceEEEeeCCCCCCc
Confidence 9997 66666666543 33467788999999999987643 1 2334688899888665
Q ss_pred CCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEe--------------CCeEEEEEEECCCCcEEE
Q 003363 417 FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW--------------GSSQVIISVNVSSGELLR 482 (826)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~--------------~~~~~l~~vdl~tg~~~~ 482 (826)
+.+..... + ..+.-++||+.+ +.-.. ....-||.+++.+++...
T Consensus 277 ~~~~~~p~------------------~---~H~~ss~Dg~L~-vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~ 334 (386)
T PF14583_consen 277 RRLMEMPW------------------C---SHFMSSPDGKLF-VGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK 334 (386)
T ss_dssp EEEEEE-S------------------E---EEEEE-TTSSEE-EEEE-------------------EEEEEETTTTEEEE
T ss_pred eEEEeCCc------------------e---eeeEEcCCCCEE-EecCCCCCccccccccceecCCcEEEEeccccCceee
Confidence 33211110 0 011224666633 22211 112367888998888776
Q ss_pred ecCCCC-----------CeeeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 003363 483 ITPAES-----------NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 483 lt~~~~-----------~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 521 (826)
|..... .+-.+.|+|||++++|.+.- ..++.||++++.
T Consensus 335 l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~-~G~~~vY~v~i~ 383 (386)
T PF14583_consen 335 LARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDM-EGPPAVYLVEIP 383 (386)
T ss_dssp EEE-------BTTBSSTT----EE-TTSSEEEEEE-T-TSS-EEEEEE--
T ss_pred eeeccCcceeecCCCccCCCCCccCCCCCEEEEECCC-CCCccEEEEeCc
Confidence 654321 24557899999998887765 666789998864
|
|
| >PLN02211 methyl indole-3-acetate methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-12 Score=135.88 Aligned_cols=214 Identities=16% Similarity=0.184 Sum_probs=124.7
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (826)
+..|.||++||..+. ...|......|.++||.|+++|+||.+ .+.. .......+++..+.+..+++... .
T Consensus 16 ~~~p~vvliHG~~~~--~~~w~~~~~~L~~~g~~vi~~dl~g~G---~s~~----~~~~~~~~~~~~~~l~~~i~~l~-~ 85 (273)
T PLN02211 16 RQPPHFVLIHGISGG--SWCWYKIRCLMENSGYKVTCIDLKSAG---IDQS----DADSVTTFDEYNKPLIDFLSSLP-E 85 (273)
T ss_pred CCCCeEEEECCCCCC--cCcHHHHHHHHHhCCCEEEEecccCCC---CCCC----CcccCCCHHHHHHHHHHHHHhcC-C
Confidence 456899999997655 457888888998899999999999944 3211 01111345555555544444321 2
Q ss_pred CCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhcc----CCCCCCchhhhh-----ccC-------cC---
Q 003363 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG----TTDIPDWCYVES-----YGS-------KG--- 730 (826)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~----~~~~~~~~~~~~-----~~~-------~~--- 730 (826)
.+++.|+||||||.++..++.++|++++++|+.++......+.. ....+.+..... ++. ..
T Consensus 86 ~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (273)
T PLN02211 86 NEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLGFQTDEDMKDGVPDLSEFGDVYELGFGLGPDQPPTSAIIK 165 (273)
T ss_pred CCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCCCCCCHHHHHhccccchhhhccceeeeeccCCCCCCceeeeC
Confidence 47899999999999999999999999999999876431100000 000000000000 000 00
Q ss_pred ----Cc-cCCCCCChhhHH---HHhhcCc---c------cccCCC-CCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCE
Q 003363 731 ----KD-SFTESPSVEDLT---RFHSKSP---I------SHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALREKGVET 792 (826)
Q Consensus 731 ----~~-~~~~~~~~~~~~---~~~~~sp---~------~~~~~i-~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~ 792 (826)
.. .+...+. +... ......+ + ....++ ++|+++|.|++|..+|++..+.+.+.+.. .
T Consensus 166 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip~~~~~~m~~~~~~----~ 240 (273)
T PLN02211 166 KEFRRKILYQMSPQ-EDSTLAAMLLRPGPILALRSARFEEETGDIDKVPRVYIKTLHDHVVKPEQQEAMIKRWPP----S 240 (273)
T ss_pred HHHHHHHHhcCCCH-HHHHHHHHhcCCcCccccccccccccccccCccceEEEEeCCCCCCCHHHHHHHHHhCCc----c
Confidence 00 0111111 1111 0111011 1 112344 68999999999999999998888877653 3
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 003363 793 KVIVFPNDVHGIERPQSDFESFLNIGLW 820 (826)
Q Consensus 793 ~~~~~p~~~H~~~~~~~~~~~~~~i~~w 820 (826)
+++.++ +||........ ++...|.+.
T Consensus 241 ~~~~l~-~gH~p~ls~P~-~~~~~i~~~ 266 (273)
T PLN02211 241 QVYELE-SDHSPFFSTPF-LLFGLLIKA 266 (273)
T ss_pred EEEEEC-CCCCccccCHH-HHHHHHHHH
Confidence 777886 79986654433 444444443
|
|
| >COG0400 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-12 Score=125.56 Aligned_cols=188 Identities=17% Similarity=0.169 Sum_probs=127.6
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhc-CCCCCC----cchHHHHHHHHHHH
Q 003363 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQS-LPGKVG----SQDVNDVLTAIDHV 662 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~-~~~~~~----~~~~~D~~~~i~~l 662 (826)
.....|+||++||.+.. ...+......+. -.+.++.+.-+-.-..+..+... ....+- ......+.++++.+
T Consensus 14 ~~p~~~~iilLHG~Ggd--e~~~~~~~~~~~-P~~~~is~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~ 90 (207)
T COG0400 14 GDPAAPLLILLHGLGGD--ELDLVPLPELIL-PNATLVSPRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEEL 90 (207)
T ss_pred CCCCCcEEEEEecCCCC--hhhhhhhhhhcC-CCCeEEcCCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHH
Confidence 45567899999995533 334433333222 23455444322111111111100 011111 11234455666666
Q ss_pred HHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhh
Q 003363 663 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED 742 (826)
Q Consensus 663 ~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (826)
.++..+|.+|+.++|+|.|+.+++.+..++|+.++++++.+|..-... .
T Consensus 91 ~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~------------------------------~- 139 (207)
T COG0400 91 AEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEP------------------------------E- 139 (207)
T ss_pred HHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCC------------------------------c-
Confidence 667779999999999999999999999999999999999988542110 0
Q ss_pred HHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 743 LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 743 ~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
..-..-.+|+|++||+.|++||...+.++.+.|++.|.+++...++ .||.+. .+.++.+.+|+.
T Consensus 140 ----------~~~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~-----~e~~~~~~~wl~ 203 (207)
T COG0400 140 ----------LLPDLAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHE-GGHEIP-----PEELEAARSWLA 203 (207)
T ss_pred ----------cccccCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEec-CCCcCC-----HHHHHHHHHHHH
Confidence 0001234899999999999999999999999999999999999998 899886 466788888998
Q ss_pred HHc
Q 003363 823 KYC 825 (826)
Q Consensus 823 ~~l 825 (826)
+.+
T Consensus 204 ~~~ 206 (207)
T COG0400 204 NTL 206 (207)
T ss_pred hcc
Confidence 764
|
|
| >PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-13 Score=135.99 Aligned_cols=174 Identities=20% Similarity=0.222 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh---ccCC--CCCCchhhhhc
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM---VGTT--DIPDWCYVESY 726 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~---~~~~--~~~~~~~~~~~ 726 (826)
++-+..|++||.+++.+++++|+|+|.|.||-+|+.++..+| .++++|+.+|..-.... .... .++.+......
T Consensus 3 LEyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~ 81 (213)
T PF08840_consen 3 LEYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISK 81 (213)
T ss_dssp CHHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG
T ss_pred hHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhh
Confidence 456789999999999999999999999999999999999988 79999998885322110 0000 11111000000
Q ss_pred c-CcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHH-HHHHHHHHHhCCCC--EEEEEeCCCCC
Q 003363 727 G-SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSN-GLQYARALREKGVE--TKVIVFPNDVH 802 (826)
Q Consensus 727 ~-~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~-~~~~~~~l~~~g~~--~~~~~~p~~~H 802 (826)
. ......+...........-......-.++++++|+|++.|++|...|... +..+.++|+++|.+ ++++.||++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH 161 (213)
T PF08840_consen 82 FSWNEPGLLRSRYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGH 161 (213)
T ss_dssp -EE-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S
T ss_pred ceecCCcceehhhhhhcccccccccccccHHHcCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCc
Confidence 0 00000000000000000000111223467889999999999999998755 44677889988765 88999999999
Q ss_pred CCCCC---------------------------CCHHHHHHHHHHHHHHHcC
Q 003363 803 GIERP---------------------------QSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 803 ~~~~~---------------------------~~~~~~~~~i~~w~~~~l~ 826 (826)
.+..+ ....+.|.++++||++||+
T Consensus 162 ~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~ 212 (213)
T PF08840_consen 162 LIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLG 212 (213)
T ss_dssp ---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred eecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 86432 1346889999999999985
|
Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B. |
| >KOG1838 consensus Alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-11 Score=129.52 Aligned_cols=242 Identities=18% Similarity=0.163 Sum_probs=148.8
Q ss_pred CCeeEEEEEEecCCC---CCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 572 AQKPFEAIFVSSSHK---KDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~---~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
||..+..=++.+.+- ......|+||++||-.++.........+..+.+.||.|+++|.||.++..-.. +.-+-
T Consensus 102 DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~LtT----pr~f~ 177 (409)
T KOG1838|consen 102 DGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLTT----PRLFT 177 (409)
T ss_pred CCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccCC----Cceee
Confidence 444454444444332 12356799999999766654434445666778999999999999976543222 22223
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC---ceeEEEecCCccchh-hhccCCCCCCchhh-
Q 003363 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLA-LMVGTTDIPDWCYV- 723 (826)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~p~~~~~-~~~~~~~~~~~~~~- 723 (826)
....+|+.++++++.++. ...++..+|.|+||.+...++++..+ +..|+++.+|+--.. ...-......+.+.
T Consensus 178 ag~t~Dl~~~v~~i~~~~--P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~~~~~~~~~~~~~~~~y~~ 255 (409)
T KOG1838|consen 178 AGWTEDLREVVNHIKKRY--PQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDLLAASRSIETPLYRRFYNR 255 (409)
T ss_pred cCCHHHHHHHHHHHHHhC--CCCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchhhhhhhHHhcccchHHHHH
Confidence 335899999999999984 34689999999999999999886543 455566666643110 00000000001000
Q ss_pred ---------------------------------hhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCC
Q 003363 724 ---------------------------------ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQD 770 (826)
Q Consensus 724 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D 770 (826)
..+.......+.+.+. ..+.|...|+..++++|++|+|+|+..+|
T Consensus 256 ~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~--~deYY~~aSs~~~v~~I~VP~L~ina~DD 333 (409)
T KOG1838|consen 256 ALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKS--VDEYYKKASSSNYVDKIKVPLLCINAADD 333 (409)
T ss_pred HHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCc--HHHHHhhcchhhhcccccccEEEEecCCC
Confidence 0001111111222222 33566778999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCC---CHHHHHHH-HHHHHHHH
Q 003363 771 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ---SDFESFLN-IGLWFKKY 824 (826)
Q Consensus 771 ~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~---~~~~~~~~-i~~w~~~~ 824 (826)
+++|.. +.-..+. ..+..+-+++-.-+||--.... +...++.+ +.+||...
T Consensus 334 Pv~p~~-~ip~~~~--~~np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~~ 388 (409)
T KOG1838|consen 334 PVVPEE-AIPIDDI--KSNPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGNA 388 (409)
T ss_pred CCCCcc-cCCHHHH--hcCCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHHH
Confidence 999875 2223222 2345788888888899532221 44456666 88888654
|
|
| >PRK08775 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-12 Score=139.67 Aligned_cols=198 Identities=14% Similarity=0.130 Sum_probs=115.5
Q ss_pred chHHHH---HHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCc-EEEEEecchHHHH
Q 003363 610 YSKSLA---FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLT 685 (826)
Q Consensus 610 ~~~~~~---~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r-v~l~G~S~GG~~a 685 (826)
|..++. .|...+|.|+++|+||. |.+. ... ....+..+.+..+++. ++.++ +.|+||||||+++
T Consensus 85 w~~~v~~~~~L~~~~~~Vi~~Dl~G~---g~s~----~~~---~~~~~~a~dl~~ll~~--l~l~~~~~lvG~SmGG~vA 152 (343)
T PRK08775 85 WEGLVGSGRALDPARFRLLAFDFIGA---DGSL----DVP---IDTADQADAIALLLDA--LGIARLHAFVGYSYGALVG 152 (343)
T ss_pred chhccCCCCccCccccEEEEEeCCCC---CCCC----CCC---CCHHHHHHHHHHHHHH--cCCCcceEEEEECHHHHHH
Confidence 444453 45455799999999994 3331 111 1234444444444444 23345 5799999999999
Q ss_pred HHHHHhCCCceeEEEecCCccchhh----hcc--------C-C-CCC-C------chhhhhccC-c-CCccCCCC-----
Q 003363 686 THLIGQAPDKFVAAAARNPLCNLAL----MVG--------T-T-DIP-D------WCYVESYGS-K-GKDSFTES----- 737 (826)
Q Consensus 686 ~~~a~~~p~~~~a~v~~~p~~~~~~----~~~--------~-~-~~~-~------~~~~~~~~~-~-~~~~~~~~----- 737 (826)
+.++.++|++++++|++++...... ... . . ... . +.....+.. . ....+...
T Consensus 153 ~~~A~~~P~~V~~LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (343)
T PRK08775 153 LQFASRHPARVRTLVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVIN 232 (343)
T ss_pred HHHHHHChHhhheEEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccC
Confidence 9999999999999999987532110 000 0 0 000 0 000000000 0 00000000
Q ss_pred ----CChh-hH-----HHHhhcCc-------------ccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEE
Q 003363 738 ----PSVE-DL-----TRFHSKSP-------------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 794 (826)
Q Consensus 738 ----~~~~-~~-----~~~~~~sp-------------~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 794 (826)
.... .. ......++ ...+.++++|+|+++|++|..+|+..+.++.+.+.. ..++
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~PtLvi~G~~D~~~p~~~~~~~~~~i~p---~a~l 309 (343)
T PRK08775 233 GRVRVAAEDYLDAAGAQYVARTPVNAYLRLSESIDLHRVDPEAIRVPTVVVAVEGDRLVPLADLVELAEGLGP---RGSL 309 (343)
T ss_pred CCccchHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCChhcCCCCeEEEEeCCCEeeCHHHHHHHHHHcCC---CCeE
Confidence 0000 00 00000000 113567899999999999999999988888877742 3689
Q ss_pred EEeCC-CCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 795 IVFPN-DVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 795 ~~~p~-~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+++++ +||.....+. ..+...+.+||.+
T Consensus 310 ~~i~~~aGH~~~lE~P-e~~~~~l~~FL~~ 338 (343)
T PRK08775 310 RVLRSPYGHDAFLKET-DRIDAILTTALRS 338 (343)
T ss_pred EEEeCCccHHHHhcCH-HHHHHHHHHHHHh
Confidence 99985 9998775544 4888889999975
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-10 Score=124.16 Aligned_cols=246 Identities=15% Similarity=0.118 Sum_probs=140.5
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
....+|+|||+.++.....+ + .+.+| ..++..+.+...... ..+.|+|||+.|+.....
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~-~---~v~~~d~~~~~~~~~~~~~~~~----------~~~~~~~~g~~l~~~~~~----- 93 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDS-D---TIQVIDLATGEVIGTLPSGPDP----------ELFALHPNGKILYIANED----- 93 (300)
T ss_pred CCceEECCCCCEEEEEECCC-C---eEEEEECCCCcEEEeccCCCCc----------cEEEECCCCCEEEEEcCC-----
Confidence 45689999999876554322 1 23444 334433333222222 578899999977654321
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (826)
...|++||+.+++.... .+.......++|+|||+. +
T Consensus 94 --------------------------------------~~~l~~~d~~~~~~~~~--~~~~~~~~~~~~~~dg~~----l 129 (300)
T TIGR03866 94 --------------------------------------DNLVTVIDIETRKVLAE--IPVGVEPEGMAVSPDGKI----V 129 (300)
T ss_pred --------------------------------------CCeEEEEECCCCeEEeE--eeCCCCcceEEECCCCCE----E
Confidence 24799999988764332 232334567899999997 7
Q ss_pred EEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccC
Q 003363 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (826)
Q Consensus 314 vf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~ 393 (826)
++.... ...++.+|. .+++...............|+|||++|++.+..+
T Consensus 130 ~~~~~~--------------~~~~~~~d~-----------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 178 (300)
T TIGR03866 130 VNTSET--------------TNMAHFIDT-----------------KTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIG 178 (300)
T ss_pred EEEecC--------------CCeEEEEeC-----------------CCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCC
Confidence 766521 113555676 3443322111122345678999999887654332
Q ss_pred CCCCCCCcccceEEEEeCCCCCCCC-cccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003363 394 SVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (826)
Q Consensus 394 ~~~~g~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (826)
..|++||+.+++... +......+ .... .....+.|+|||+.+++.... ...+..
T Consensus 179 ----------~~v~i~d~~~~~~~~~~~~~~~~~-------~~~~------~~~~~i~~s~dg~~~~~~~~~--~~~i~v 233 (300)
T TIGR03866 179 ----------GTVSVIDVATRKVIKKITFEIPGV-------HPEA------VQPVGIKLTKDGKTAFVALGP--ANRVAV 233 (300)
T ss_pred ----------CEEEEEEcCcceeeeeeeeccccc-------cccc------CCccceEECCCCCEEEEEcCC--CCeEEE
Confidence 468999988765321 11000000 0000 012356789999987665432 235778
Q ss_pred EECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 473 VNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 473 vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
+|+.++++..............|+++|+.|+...... ..|.+.++.+.
T Consensus 234 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~---~~i~v~d~~~~ 281 (300)
T TIGR03866 234 VDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVS---NDVSVIDVAAL 281 (300)
T ss_pred EECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCC---CeEEEEECCCC
Confidence 8998888765433223344567899999776543222 24777776544
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.1e-13 Score=136.49 Aligned_cols=217 Identities=15% Similarity=0.134 Sum_probs=107.8
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-------C--------Cc-cchHHHHHHHHCCcEEEEECCC
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-------S--------LS-SYSKSLAFLSSVGYSLLIVNYR 630 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~-------~--------~~-~~~~~~~~la~~G~~Vl~~d~r 630 (826)
.+....+..+.++++.|++ ..++.|.||++||-+... . .. .-......|+++||+|+++|.+
T Consensus 92 ~f~~~p~~~vpaylLvPd~--~~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GYVvla~D~~ 169 (390)
T PF12715_consen 92 EFNTTPGSRVPAYLLVPDG--AKGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGYVVLAPDAL 169 (390)
T ss_dssp EE--STTB-EEEEEEEETT----S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTSEEEEE--T
T ss_pred EEEccCCeeEEEEEEecCC--CCCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCCEEEEEccc
Confidence 3445566779999999985 278999999999832211 0 00 0112467899999999999999
Q ss_pred CCCCCchhhhhc----------------CCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC
Q 003363 631 GSLGFGEEALQS----------------LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 694 (826)
Q Consensus 631 G~~g~G~~~~~~----------------~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~ 694 (826)
|-|+.+...... +-..+......|...+++||..++.+|++||+++|+|+||+.++++++. .+
T Consensus 170 g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~LaAL-Dd 248 (390)
T PF12715_consen 170 GFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAWWLAAL-DD 248 (390)
T ss_dssp TSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHHHHH--T
T ss_pred cccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHHHHHHHHc-ch
Confidence 855443211000 0011122234566779999999999999999999999999999999987 46
Q ss_pred ceeEEEecCCccchhh---hccCCCCCCchhhhhccCcCCccCCCCC-ChhhHHHHhhcCcccccCCCCCcEEEEEeCCC
Q 003363 695 KFVAAAARNPLCNLAL---MVGTTDIPDWCYVESYGSKGKDSFTESP-SVEDLTRFHSKSPISHISKVKTPTIFLLGAQD 770 (826)
Q Consensus 695 ~~~a~v~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D 770 (826)
+++++|+.+-++.... .....+..... .+..-.....-+.. ..+..+...-.. ..|+|++.|..|
T Consensus 249 RIka~v~~~~l~~~~~~~~~mt~~~~~~~~---~~~~~~~~~iPgl~r~~D~PdIasliA--------PRPll~~nG~~D 317 (390)
T PF12715_consen 249 RIKATVANGYLCTTQERALLMTMPNNNGLR---GFPNCICNYIPGLWRYFDFPDIASLIA--------PRPLLFENGGKD 317 (390)
T ss_dssp T--EEEEES-B--HHHHHHHB----TTS-------SS-GGG--TTCCCC--HHHHHHTTT--------TS-EEESS-B-H
T ss_pred hhHhHhhhhhhhccchhhHhhccccccccC---cCcchhhhhCccHHhhCccHHHHHHhC--------CCcchhhcCCcc
Confidence 8888887665543321 11000000000 00000000000000 112222221122 268999999999
Q ss_pred CCCCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 003363 771 LRVPVSNGLQYARALREKGVETKVIVFPND 800 (826)
Q Consensus 771 ~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~ 800 (826)
..+|. .+..|+.. .++-+++++.||..
T Consensus 318 klf~i--V~~AY~~~-~~p~n~~~~~~p~~ 344 (390)
T PF12715_consen 318 KLFPI--VRRAYAIM-GAPDNFQIHHYPKF 344 (390)
T ss_dssp HHHHH--HHHHHHHT-T-GGGEEE---GGG
T ss_pred cccHH--HHHHHHhc-CCCcceEEeecccc
Confidence 87744 33333332 33456899999864
|
|
| >KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5e-12 Score=119.16 Aligned_cols=171 Identities=23% Similarity=0.408 Sum_probs=124.3
Q ss_pred chHHHHHHHHCCcEEEEECC-CC---CCCCchhhh-hcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHH
Q 003363 610 YSKSLAFLSSVGYSLLIVNY-RG---SLGFGEEAL-QSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFL 684 (826)
Q Consensus 610 ~~~~~~~la~~G~~Vl~~d~-rG---~~g~G~~~~-~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~ 684 (826)
-...+..++..||.|++||+ || +.+.-.... .-..+.-......|+.+.++||..++ +..+|+++|+++||-+
T Consensus 56 ~r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~ 133 (242)
T KOG3043|consen 56 TREGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKV 133 (242)
T ss_pred HHHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcC--CcceeeEEEEeecceE
Confidence 34466778889999999996 45 211111100 00111222345789999999999774 6789999999999999
Q ss_pred HHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEE
Q 003363 685 TTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIF 764 (826)
Q Consensus 685 a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLi 764 (826)
+..+....| .|.++++..|..- . ...+.++++|+|+
T Consensus 134 vv~~~~~~~-~f~a~v~~hps~~-------------------------------d------------~~D~~~vk~Pilf 169 (242)
T KOG3043|consen 134 VVTLSAKDP-EFDAGVSFHPSFV-------------------------------D------------SADIANVKAPILF 169 (242)
T ss_pred EEEeeccch-hheeeeEecCCcC-------------------------------C------------hhHHhcCCCCEEE
Confidence 888777766 7888887766321 0 1234567899999
Q ss_pred EEeCCCCCCCcHHHHHHHHHHHhCCC-CEEEEEeCCCCCCCCC-------CC---CHHHHHHHHHHHHHHHcC
Q 003363 765 LLGAQDLRVPVSNGLQYARALREKGV-ETKVIVFPNDVHGIER-------PQ---SDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 765 i~G~~D~~vp~~~~~~~~~~l~~~g~-~~~~~~~p~~~H~~~~-------~~---~~~~~~~~i~~w~~~~l~ 826 (826)
+.|+.|..+|+....++.+.|++... ..++.+|++.+|++.. |+ ...+.++++..||++|++
T Consensus 170 l~ae~D~~~p~~~v~~~ee~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y~~ 242 (242)
T KOG3043|consen 170 LFAELDEDVPPKDVKAWEEKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHYLA 242 (242)
T ss_pred EeecccccCCHHHHHHHHHHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999987632 4578999999999873 22 234678899999999974
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-11 Score=120.93 Aligned_cols=143 Identities=20% Similarity=0.328 Sum_probs=98.8
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
..+...+|||+|++||.-+ ..+..++|+-....+...+. +... |...++|||||++||..+.++...
T Consensus 116 e~Vl~~~fsp~g~~l~tGs-----GD~TvR~WD~~TeTp~~t~K-gH~~------WVlcvawsPDgk~iASG~~dg~I~- 182 (480)
T KOG0271|consen 116 EAVLSVQFSPTGSRLVTGS-----GDTTVRLWDLDTETPLFTCK-GHKN------WVLCVAWSPDGKKIASGSKDGSIR- 182 (480)
T ss_pred CcEEEEEecCCCceEEecC-----CCceEEeeccCCCCcceeec-CCcc------EEEEEEECCCcchhhccccCCeEE-
Confidence 4588999999999998642 23467888544444444443 3333 459999999999999998877543
Q ss_pred CCccCC-CCCCCCCCccCCCCCCcceeecC-----CCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCC
Q 003363 234 PTFSLG-STKGGSSDKDCNSWKGQGDWEED-----WGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 307 (826)
Q Consensus 234 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d-----~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~ 307 (826)
.|+.. ....+.....++.|+....|.|- -+...+..+++++.+||+..|+..... ......+..+.|-- .
T Consensus 183 -lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l-sgHT~~VTCvrwGG--~ 258 (480)
T KOG0271|consen 183 -LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL-SGHTASVTCVRWGG--E 258 (480)
T ss_pred -EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe-ccCccceEEEEEcC--C
Confidence 34422 23456788889999987777552 233445556899999999888766552 34456788888964 3
Q ss_pred CCccEEEEEe
Q 003363 308 GLHQYLVFVG 317 (826)
Q Consensus 308 ~~~~~lvf~~ 317 (826)
. ++|.+
T Consensus 259 g----liySg 264 (480)
T KOG0271|consen 259 G----LIYSG 264 (480)
T ss_pred c----eEEec
Confidence 4 66665
|
|
| >KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3e-12 Score=135.35 Aligned_cols=221 Identities=19% Similarity=0.260 Sum_probs=135.5
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHC-CcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV-GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~-G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (826)
...|.||++||...+ ...|...+..|... |+.|+++|..|. |+ .+.. + .-....+.+....+..+..+..
T Consensus 56 ~~~~pvlllHGF~~~--~~~w~~~~~~L~~~~~~~v~aiDl~G~-g~-~s~~---~-~~~~y~~~~~v~~i~~~~~~~~- 126 (326)
T KOG1454|consen 56 KDKPPVLLLHGFGAS--SFSWRRVVPLLSKAKGLRVLAIDLPGH-GY-SSPL---P-RGPLYTLRELVELIRRFVKEVF- 126 (326)
T ss_pred CCCCcEEEeccccCC--cccHhhhccccccccceEEEEEecCCC-Cc-CCCC---C-CCCceehhHHHHHHHHHHHhhc-
Confidence 567889999995543 55777777777544 699999999992 22 1111 1 1112456676666666555532
Q ss_pred CCCcEEEEEecchHHHHHHHHHhCCCceeEEE---ecCCccchhhhc--------c----CCC--------CCCchhhhh
Q 003363 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAA---ARNPLCNLALMV--------G----TTD--------IPDWCYVES 725 (826)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v---~~~p~~~~~~~~--------~----~~~--------~~~~~~~~~ 725 (826)
.+++.++|||+||++++.+|+.+|+.++.++ +.++........ . ... .+.-.+...
T Consensus 127 -~~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 205 (326)
T KOG1454|consen 127 -VEPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSEG 205 (326)
T ss_pred -CcceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCccccccchhheeHh
Confidence 3459999999999999999999999999999 554433210000 0 000 000000000
Q ss_pred ccCcCCccCCC-CCChhhH--------------HH---H----h--hcCcccccCCCC-CcEEEEEeCCCCCCCcHHHHH
Q 003363 726 YGSKGKDSFTE-SPSVEDL--------------TR---F----H--SKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQ 780 (826)
Q Consensus 726 ~~~~~~~~~~~-~~~~~~~--------------~~---~----~--~~sp~~~~~~i~-~PvLii~G~~D~~vp~~~~~~ 780 (826)
........+.. ....+.. +. + . .......+.++. +|+||++|+.|..+|.+.+..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D~~~p~~~~~~ 285 (326)
T KOG1454|consen 206 LLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKDQIVPLELAEE 285 (326)
T ss_pred hhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCceEEEEcCcCCccCHHHHHH
Confidence 00000000000 0000000 00 0 0 022334566776 999999999999999998877
Q ss_pred HHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 781 YARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 781 ~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
+.+.+. .+++++++++||.... +...++...|..|+.++.
T Consensus 286 ~~~~~p----n~~~~~I~~~gH~~h~-e~Pe~~~~~i~~Fi~~~~ 325 (326)
T KOG1454|consen 286 LKKKLP----NAELVEIPGAGHLPHL-ERPEEVAALLRSFIARLR 325 (326)
T ss_pred HHhhCC----CceEEEeCCCCccccc-CCHHHHHHHHHHHHHHhc
Confidence 777663 4899999999998776 555688999999998764
|
|
| >COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-11 Score=120.41 Aligned_cols=225 Identities=20% Similarity=0.203 Sum_probs=137.8
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-ccchHHHHHHHHCCcEEEEEC-CCCCC---CCchhhhhcCCCC
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVN-YRGSL---GFGEEALQSLPGK 646 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~~~~~~~la~~G~~Vl~~d-~rG~~---g~G~~~~~~~~~~ 646 (826)
.|...++++|.|++.+ .+.|+||++||+.++... .....+-....+.||.|+.|| +.+.- +.+..+ ......
T Consensus 43 ~g~~r~y~l~vP~g~~--~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPdg~~~~wn~~~~~~~~-~p~~~~ 119 (312)
T COG3509 43 NGLKRSYRLYVPPGLP--SGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPDGYDRAWNANGCGNWF-GPADRR 119 (312)
T ss_pred CCCccceEEEcCCCCC--CCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcCccccccCCCcccccC-Cccccc
Confidence 4567889999999753 344999999997654311 111122334457899999995 22211 011110 001112
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCC-chhhhh
Q 003363 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD-WCYVES 725 (826)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~-~~~~~~ 725 (826)
-+..++..+.+.+..++.+..+|+.||++.|.|.||.|+..+++.+|++|.++..+++...... ....+. ...+..
T Consensus 120 ~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~~~~~---a~~~~rp~~~m~~ 196 (312)
T COG3509 120 RGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLLALGV---ACTPPRPVSVMAF 196 (312)
T ss_pred CCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecccCCCc---ccCCCCchhHHHh
Confidence 3445678889999999999889999999999999999999999999999999988777542000 000000 000000
Q ss_pred ccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHH-------------------
Q 003363 726 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALR------------------- 786 (826)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~------------------- 786 (826)
.+ ..+|..-...-..| |-+|..|..|+..+..+..+.+.
T Consensus 197 ~G--------------------~~Dp~~p~~gG~~~--~g~g~~~~~v~~~~~~~~Waa~ng~~~~p~~~~~~~~~~~~~ 254 (312)
T COG3509 197 HG--------------------TADPLNPYHGGGVP--IGRGQRDGVVSAADLAARWAAVNGCQAGPDTAELPDVGDGTD 254 (312)
T ss_pred cC--------------------CCCCCCCCCCCCcc--cccccccccccHHHHHHHHHHhcCCCCCCcccccCCCcccce
Confidence 00 11221111111223 66777777665555555555542
Q ss_pred ----hCCCCEEEEEeCCCCCCCCCCC-----------CHHHHHHHHHHHHHHH
Q 003363 787 ----EKGVETKVIVFPNDVHGIERPQ-----------SDFESFLNIGLWFKKY 824 (826)
Q Consensus 787 ----~~g~~~~~~~~p~~~H~~~~~~-----------~~~~~~~~i~~w~~~~ 824 (826)
..+.+++++.+.+.||...... ...+..++|.+||..|
T Consensus 255 ~~~~~~~~~V~~y~i~g~GH~wp~~~~~~~~~~g~~t~~~dat~~iw~Ff~~~ 307 (312)
T COG3509 255 YDTCDGNARVELYTIDGGGHTWPGGTQYGPAALGMSTRGFDATERIWRFFRQH 307 (312)
T ss_pred eeccCCCcceEEEEEeCCcccCcCCCCCCcccccccccCcchHHHHHHHHHhc
Confidence 2245689999999999876321 1235678899999876
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-11 Score=155.69 Aligned_cols=227 Identities=16% Similarity=0.190 Sum_probs=133.9
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
..|+||++||.+.+ ...|...+..|.. +|.|+++|+||.+.+................++++.+.+..++++ ++.
T Consensus 1370 ~~~~vVllHG~~~s--~~~w~~~~~~L~~-~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~--l~~ 1444 (1655)
T PLN02980 1370 EGSVVLFLHGFLGT--GEDWIPIMKAISG-SARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLIEH--ITP 1444 (1655)
T ss_pred CCCeEEEECCCCCC--HHHHHHHHHHHhC-CCEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHHHHH--hCC
Confidence 45789999997765 4467777777754 699999999995443211000000001123456666666555554 345
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh--c--cCCCCCCc----------hhhhhccC-cCCccCC
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM--V--GTTDIPDW----------CYVESYGS-KGKDSFT 735 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~--~--~~~~~~~~----------~~~~~~~~-~~~~~~~ 735 (826)
+++.|+||||||.+++.++.++|++++++|+.++...+... . .......+ .+...+.. .......
T Consensus 1445 ~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 1524 (1655)
T PLN02980 1445 GKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDHGLEIFLENWYSGELWKSLR 1524 (1655)
T ss_pred CCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhhhHHHHHHHhccHHHhhhhc
Confidence 78999999999999999999999999999988764221100 0 00000000 00000000 0000000
Q ss_pred CCC-------------ChhhHH-HHhh------cCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCC------
Q 003363 736 ESP-------------SVEDLT-RFHS------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG------ 789 (826)
Q Consensus 736 ~~~-------------~~~~~~-~~~~------~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g------ 789 (826)
..+ ...... .+.. .+....+.++++|+|+++|++|..++ ..+.++.+.+.+..
T Consensus 1525 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~~~~~~~ 1603 (1655)
T PLN02980 1525 NHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKDVKFK-QIAQKMYREIGKSKESGNDK 1603 (1655)
T ss_pred cCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCCCEEEEEECCCCccH-HHHHHHHHHccccccccccc
Confidence 000 000000 0011 11123467889999999999999775 66677777765421
Q ss_pred --CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 790 --VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 790 --~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
..++++++|++||....... ..+.+.+.+||.+.
T Consensus 1604 ~~~~a~lvvI~~aGH~~~lE~P-e~f~~~I~~FL~~~ 1639 (1655)
T PLN02980 1604 GKEIIEIVEIPNCGHAVHLENP-LPVIRALRKFLTRL 1639 (1655)
T ss_pred cccceEEEEECCCCCchHHHCH-HHHHHHHHHHHHhc
Confidence 12689999999998765444 47888999999863
|
|
| >PRK06765 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-11 Score=132.67 Aligned_cols=243 Identities=12% Similarity=0.077 Sum_probs=142.4
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC----------ccch-HHH---HHHHHCCcEEEEECCCCCCC-----C
Q 003363 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL----------SSYS-KSL---AFLSSVGYSLLIVNYRGSLG-----F 635 (826)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~----------~~~~-~~~---~~la~~G~~Vl~~d~rG~~g-----~ 635 (826)
.+.+..|-.. ...+.++||++|+-.+.... ..|. ..+ ..|--..|.||++|.-|++. +
T Consensus 42 ~~~Y~t~G~l---n~~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~ 118 (389)
T PRK06765 42 QMGYETYGTL---NRAKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNV 118 (389)
T ss_pred eEEEEecccc---CCCCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCC
Confidence 3544555443 23456999999984332110 1221 111 12334569999999998642 1
Q ss_pred chhhhhcCC--------CCCCcchHHHHHHHHHHHHHcCCCCCCcEE-EEEecchHHHHHHHHHhCCCceeEEEecCCcc
Q 003363 636 GEEALQSLP--------GKVGSQDVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (826)
Q Consensus 636 G~~~~~~~~--------~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~-l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 706 (826)
|........ .+.....+.|+.+++..+++. +..+++. ++||||||.+++.++.++|++++.+|+++...
T Consensus 119 g~tgp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~--lgi~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~~~ 196 (389)
T PRK06765 119 ITTGPASINPKTGKPYGMDFPVVTILDFVRVQKELIKS--LGIARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIGNP 196 (389)
T ss_pred CCCCCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHH--cCCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEecCC
Confidence 221111111 123335688888888888876 3446775 99999999999999999999999999886532
Q ss_pred ch--------hh-hc-cCCCCCCch---h---------------------------hhhccCcCCccCC---CCCChhhH
Q 003363 707 NL--------AL-MV-GTTDIPDWC---Y---------------------------VESYGSKGKDSFT---ESPSVEDL 743 (826)
Q Consensus 707 ~~--------~~-~~-~~~~~~~~~---~---------------------------~~~~~~~~~~~~~---~~~~~~~~ 743 (826)
.. .. .. ....-+.|. | ...++........ ........
T Consensus 197 ~~~~~~~~~~~~~~~~ai~~dp~~~~G~y~~~~~p~~Gl~~a~~~~~~~~~s~~~~~~~f~r~~~~~~~~~~~~~~~~~~ 276 (389)
T PRK06765 197 QNDAWTSVNVLQNWAEAIRLDPNWKGGKYYGEEQPMKGLTLALRMMTMNAFDEHFYETTFPRNASIEVDPYEKVSTLTSF 276 (389)
T ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCCCCCCCCchHHHHHHHHHHHHHcCCHHHHHHHcCcCccccccccccccchhhH
Confidence 11 00 00 000011110 0 0000100000000 00000000
Q ss_pred HHHh------------------------hc-------CcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCE
Q 003363 744 TRFH------------------------SK-------SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVET 792 (826)
Q Consensus 744 ~~~~------------------------~~-------sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~ 792 (826)
+.|. .. +....+.++++|+|+|+|+.|..+|++.++++.+.++..+..+
T Consensus 277 e~yl~~~~~~~~~~~Dan~~l~l~~a~~~~d~g~~~~dl~~~L~~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~~~a 356 (389)
T PRK06765 277 EKEINKATYRRAELVDANHWLYLAKAVQLFDAGHGFSSLEEALSNIEANVLMIPCKQDLLQPPRYNYKMVDILQKQGKYA 356 (389)
T ss_pred HHHHHHHHHHhhhccChhhHHHHHHHHHhcCCccccCCHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCe
Confidence 1110 01 2233466889999999999999999999999999998766679
Q ss_pred EEEEeCC-CCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 793 KVIVFPN-DVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 793 ~~~~~p~-~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+++++++ .||.....+ ..++...|.+||++
T Consensus 357 ~l~~I~s~~GH~~~le~-p~~~~~~I~~FL~~ 387 (389)
T PRK06765 357 EVYEIESINGHMAGVFD-IHLFEKKIYEFLNR 387 (389)
T ss_pred EEEEECCCCCcchhhcC-HHHHHHHHHHHHcc
Confidence 9999986 899866544 34788889999875
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-10 Score=121.79 Aligned_cols=271 Identities=17% Similarity=0.152 Sum_probs=145.1
Q ss_pred CCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceee
Q 003363 137 ENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISW 215 (826)
Q Consensus 137 ~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~w 215 (826)
.|.+.+|||..+-.+....-....|.+||++|+|.++.+ +..++|.++ ..++.+|+|+.+... . .+..+
T Consensus 19 TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~d-g~~nly~lDL~t~~i~QLTdg~g~~--------~-~g~~~ 88 (386)
T PF14583_consen 19 TGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFD-GNRNLYLLDLATGEITQLTDGPGDN--------T-FGGFL 88 (386)
T ss_dssp T--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TT-SS-EEEEEETTT-EEEE---SS-B---------T-TT-EE
T ss_pred CCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccC-CCcceEEEEcccCEEEECccCCCCC--------c-cceEE
Confidence 344567777665322222334578999999999998875 888999999 788999999865322 1 36779
Q ss_pred cCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCC
Q 003363 216 NSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL 295 (826)
Q Consensus 216 SPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~ 295 (826)
||+.+.|+|+.. ...|+.+|+++++.+.|-..+...
T Consensus 89 s~~~~~~~Yv~~--------------------------------------------~~~l~~vdL~T~e~~~vy~~p~~~ 124 (386)
T PF14583_consen 89 SPDDRALYYVKN--------------------------------------------GRSLRRVDLDTLEERVVYEVPDDW 124 (386)
T ss_dssp -TTSSEEEEEET--------------------------------------------TTEEEEEETTT--EEEEEE--TTE
T ss_pred ecCCCeEEEEEC--------------------------------------------CCeEEEEECCcCcEEEEEECCccc
Confidence 999999999732 147999999999988774344443
Q ss_pred ccceEEEee--CCCCCccEEEEEeecCccee-ee------eeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCccee
Q 003363 296 SVGQVVWAP--LNEGLHQYLVFVGWSSETRK-LG------IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN 366 (826)
Q Consensus 296 ~~~~~~wSP--Dg~~~~~~lvf~~~~~~~~~-~g------~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (826)
.+...|+. |++. ++.........+ +. -.+..+..+.|+.+|+ .+|+.+.
T Consensus 125 -~g~gt~v~n~d~t~----~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl-----------------~tG~~~~ 182 (386)
T PF14583_consen 125 -KGYGTWVANSDCTK----LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL-----------------KTGERKV 182 (386)
T ss_dssp -EEEEEEEE-TTSSE----EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET-----------------TT--EEE
T ss_pred -ccccceeeCCCccE----EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC-----------------CCCceeE
Confidence 33456654 4555 555432222111 00 0122345678999999 8899998
Q ss_pred cCCCCccccCceecCCCCEEEEEeccCCCCCCCCccc-ceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCC
Q 003363 367 LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSAT-DSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 445 (826)
Q Consensus 367 Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~-~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~ 445 (826)
+.........+.|||.--.++..-.+ |++..- .+||.++.+++..+.+...... . .
T Consensus 183 v~~~~~wlgH~~fsP~dp~li~fCHE-----Gpw~~Vd~RiW~i~~dg~~~~~v~~~~~~--e----------------~ 239 (386)
T PF14583_consen 183 VFEDTDWLGHVQFSPTDPTLIMFCHE-----GPWDLVDQRIWTINTDGSNVKKVHRRMEG--E----------------S 239 (386)
T ss_dssp EEEESS-EEEEEEETTEEEEEEEEE------S-TTTSS-SEEEEETTS---EESS---TT--E----------------E
T ss_pred EEecCccccCcccCCCCCCEEEEecc-----CCcceeceEEEEEEcCCCcceeeecCCCC--c----------------c
Confidence 88877777889999855545444444 555554 4899999888665443322110 0 1
Q ss_pred CCCCccccCCCEEEEEEEeCC--eEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEe
Q 003363 446 ILSNPWLSDGCTMLLSSIWGS--SQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 507 (826)
Q Consensus 446 ~~~~~ws~Dg~~l~~~~~~~~--~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s 507 (826)
...--|++||+.|++.....+ ...|+.+|+++++.+++..... .+....++||+.++--.+
T Consensus 240 ~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~-~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 240 VGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPW-CSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp EEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-S-EEEEEE-TTSSEEEEEE-
T ss_pred cccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCc-eeeeEEcCCCCEEEecCC
Confidence 123359999999999776443 4578899999999887755443 233345667775554443
|
|
| >TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.6e-11 Score=132.41 Aligned_cols=227 Identities=16% Similarity=0.212 Sum_probs=133.4
Q ss_pred cCceeeeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCcc---chHHHHHHHHCCcEEEEECCCCCCCCchh
Q 003363 562 KGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS---YSKSLAFLSSVGYSLLIVNYRGSLGFGEE 638 (826)
Q Consensus 562 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~---~~~~~~~la~~G~~Vl~~d~rG~~g~G~~ 638 (826)
++.++.+.+. .++.+.|.|.. .....+.||++||.....+... -...+.+|.++||.|+++|+||.+.....
T Consensus 163 Tpg~VV~~~~---~~eLi~Y~P~t--~~~~~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~ 237 (532)
T TIGR01838 163 TPGAVVFENE---LFQLIQYEPTT--ETVHKTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQAD 237 (532)
T ss_pred CCCeEEEECC---cEEEEEeCCCC--CcCCCCcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCCccccc
Confidence 3334455543 36667777763 2224566888999544322222 23578899999999999999984432111
Q ss_pred hhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHH----HHHHhC-CCceeEEEecCCccchhhhcc
Q 003363 639 ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT----HLIGQA-PDKFVAAAARNPLCNLALMVG 713 (826)
Q Consensus 639 ~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~----~~a~~~-p~~~~a~v~~~p~~~~~~~~~ 713 (826)
........+++.++++.+.+. .+.+++.++|||+||.+++ .+++.+ +++++++++.+...|+.....
T Consensus 238 ------~~~ddY~~~~i~~al~~v~~~--~g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df~~~G~ 309 (532)
T TIGR01838 238 ------KTFDDYIRDGVIAALEVVEAI--TGEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDFSDPGE 309 (532)
T ss_pred ------CChhhhHHHHHHHHHHHHHHh--cCCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCCCCcch
Confidence 112233456688889888876 4568899999999999863 234454 778999988887666431100
Q ss_pred C-------------------CCCCC----------------ch-hhhhc--cCcCCc----cC----CCCCC---hhhHH
Q 003363 714 T-------------------TDIPD----------------WC-YVESY--GSKGKD----SF----TESPS---VEDLT 744 (826)
Q Consensus 714 ~-------------------~~~~~----------------~~-~~~~~--~~~~~~----~~----~~~~~---~~~~~ 744 (826)
. -.++. |. +...+ +..... ++ ...|. .+...
T Consensus 310 l~~f~~~~~~~~~e~~~~~~G~lpg~~m~~~F~~lrp~~l~w~~~v~~yl~g~~~~~fdll~Wn~D~t~lP~~~~~~~lr 389 (532)
T TIGR01838 310 LGVFVDEEIVAGIERQNGGGGYLDGRQMAVTFSLLRENDLIWNYYVDNYLKGKSPVPFDLLFWNSDSTNLPGKMHNFYLR 389 (532)
T ss_pred hhhhcCchhHHHHHHHHHhcCCCCHHHHHHHHHhcChhhHHHHHHHHHHhcCCCccchhHHHHhccCccchHHHHHHHHH
Confidence 0 00000 00 00000 000000 00 00000 01111
Q ss_pred HHhhcCcc-----------cccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCC
Q 003363 745 RFHSKSPI-----------SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 805 (826)
Q Consensus 745 ~~~~~sp~-----------~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 805 (826)
.+...+.+ ..+.+|++|+|+++|++|.++|+..+..+.+.+.. .+..+++++||...
T Consensus 390 ~ly~~N~L~~G~~~v~g~~~dL~~I~vPvLvV~G~~D~IvP~~sa~~l~~~i~~----~~~~vL~~sGHi~~ 457 (532)
T TIGR01838 390 NLYLQNALTTGGLEVCGVRLDLSKVKVPVYIIATREDHIAPWQSAYRGAALLGG----PKTFVLGESGHIAG 457 (532)
T ss_pred HHHhcCCCcCCeeEECCEecchhhCCCCEEEEeeCCCCcCCHHHHHHHHHHCCC----CEEEEECCCCCchH
Confidence 22222222 34678899999999999999999999888776653 46678899999743
|
This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-10 Score=109.61 Aligned_cols=251 Identities=14% Similarity=0.135 Sum_probs=158.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-ceeEEEecC-CCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-QLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~-~~~~~~~~~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
+.+......||++.||...... -.+|.+.... .....++.. +.+ ..+.|--||++++..+++.+.
T Consensus 41 sqVNrLeiTpdk~~LAaa~~qh---vRlyD~~S~np~Pv~t~e~h~kNV----------taVgF~~dgrWMyTgseDgt~ 107 (311)
T KOG0315|consen 41 SQVNRLEITPDKKDLAAAGNQH---VRLYDLNSNNPNPVATFEGHTKNV----------TAVGFQCDGRWMYTGSEDGTV 107 (311)
T ss_pred cceeeEEEcCCcchhhhccCCe---eEEEEccCCCCCceeEEeccCCce----------EEEEEeecCeEEEecCCCceE
Confidence 4688899999999999754322 2333333222 234444332 333 788999999999999999887
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc-eEeccCCCC-CCccceEEEeeCCCCC
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPK-SLSVGQVVWAPLNEGL 309 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~~~~~-~~~~~~~~wSPDg~~~ 309 (826)
+.+.... ..-.....+.+-+......|+-+|++++....+|++||+.... ..++ +|. +..+.+.+..|||+.
T Consensus 108 kIWdlR~---~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l--iPe~~~~i~sl~v~~dgsm- 181 (311)
T KOG0315|consen 108 KIWDLRS---LSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL--IPEDDTSIQSLTVMPDGSM- 181 (311)
T ss_pred EEEeccC---cccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc--CCCCCcceeeEEEcCCCcE-
Confidence 6443332 1112223344555667778888999999999999999997763 4455 454 357788999999997
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEE
Q 003363 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFL 389 (826)
Q Consensus 310 ~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~ 389 (826)
++-.. ..++.|++++-... ....-..+.++..+.+.+....+|||+|+|+-.
T Consensus 182 ---l~a~n---------------nkG~cyvW~l~~~~----------~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 182 ---LAAAN---------------NKGNCYVWRLLNHQ----------TASELEPVHKFQAHNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred ---EEEec---------------CCccEEEEEccCCC----------ccccceEhhheecccceEEEEEECCCCcEEEee
Confidence 76554 33478888873210 000112234555678889999999999999988
Q ss_pred eccCCCCCCCCcccceEEEEeCCCC-C-CCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCe
Q 003363 390 SAKSSVDSGAHSATDSLHRIDWPTN-G-NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 467 (826)
Q Consensus 390 s~~~~~~~g~~~~~~~l~~~d~~~~-~-~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 467 (826)
+.+. .+++|+.++- . .+.++... ..+-...||.||++| ++++.+..
T Consensus 234 ssdk-----------tv~iwn~~~~~kle~~l~gh~--------------------rWvWdc~FS~dg~Yl-vTassd~~ 281 (311)
T KOG0315|consen 234 SSDK-----------TVKIWNTDDFFKLELVLTGHQ--------------------RWVWDCAFSADGEYL-VTASSDHT 281 (311)
T ss_pred cCCc-----------eEEEEecCCceeeEEEeecCC--------------------ceEEeeeeccCccEE-EecCCCCc
Confidence 8764 4667765553 0 01111110 112256799999876 45554566
Q ss_pred EEEEEEECCCCcEEEecC
Q 003363 468 QVIISVNVSSGELLRITP 485 (826)
Q Consensus 468 ~~l~~vdl~tg~~~~lt~ 485 (826)
.+|| ++..++..+.-.
T Consensus 282 ~rlW--~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 282 ARLW--DLSAGKEVRQYQ 297 (311)
T ss_pred eeec--ccccCceeeecC
Confidence 6666 555666544433
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.6e-11 Score=140.02 Aligned_cols=232 Identities=9% Similarity=0.096 Sum_probs=122.7
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCc
Q 003363 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~ 649 (826)
..+|..+++..+.+ ...|+||++||.+.. ...|......| ..||.|+++|+||.+ .+... .....
T Consensus 9 ~~~g~~l~~~~~g~------~~~~~ivllHG~~~~--~~~w~~~~~~L-~~~~~Vi~~D~~G~G---~S~~~---~~~~~ 73 (582)
T PRK05855 9 SSDGVRLAVYEWGD------PDRPTVVLVHGYPDN--HEVWDGVAPLL-ADRFRVVAYDVRGAG---RSSAP---KRTAA 73 (582)
T ss_pred eeCCEEEEEEEcCC------CCCCeEEEEcCCCch--HHHHHHHHHHh-hcceEEEEecCCCCC---CCCCC---Ccccc
Confidence 34567777665432 235889999997654 45677777777 678999999999954 33211 11112
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhC--CCceeEEEecC-CccchhhhccCCCC---------
Q 003363 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARN-PLCNLALMVGTTDI--------- 717 (826)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~-p~~~~~~~~~~~~~--------- 717 (826)
...+++.+.+..+++.-.. ..++.|+|||+||.+++.++... ++.+..++..+ |..+..........
T Consensus 74 ~~~~~~a~dl~~~i~~l~~-~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (582)
T PRK05855 74 YTLARLADDFAAVIDAVSP-DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGPSLDHVGFWLRSGLRRPTPRRLA 152 (582)
T ss_pred cCHHHHHHHHHHHHHHhCC-CCcEEEEecChHHHHHHHHHhCccchhhhhhheeccCCchHHHHHHHhhcccccchhhhh
Confidence 2344444444444443111 23499999999999888776652 33333333332 21110000000000
Q ss_pred -------CCchh-------------hhhccC---cCCccCCCCCCh------------hhHHHHh----hcCcccccCCC
Q 003363 718 -------PDWCY-------------VESYGS---KGKDSFTESPSV------------EDLTRFH----SKSPISHISKV 758 (826)
Q Consensus 718 -------~~~~~-------------~~~~~~---~~~~~~~~~~~~------------~~~~~~~----~~sp~~~~~~i 758 (826)
..|.. ...... .........+.. .....+. .......+..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (582)
T PRK05855 153 RALGQLLRSWYIYLFHLPVLPELLWRLGLGRAWPRLLRRVEGTPVDPIPTQTTLSDGAHGVKLYRANMIRSLSRPRERYT 232 (582)
T ss_pred HHHHHHhhhHHHHHHhCCCCcHHHhccchhhHHHHhhhhccCCCcchhhhhhhhccccchHHHHHhhhhhhhccCccCCc
Confidence 00000 000000 000000000000 0000000 00111124458
Q ss_pred CCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 759 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 759 ~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
++|+|+++|++|..+|+.....+.+.+. ..++++++ +||....+.. ..+...+.+|+.+
T Consensus 233 ~~P~lii~G~~D~~v~~~~~~~~~~~~~----~~~~~~~~-~gH~~~~e~p-~~~~~~i~~fl~~ 291 (582)
T PRK05855 233 DVPVQLIVPTGDPYVRPALYDDLSRWVP----RLWRREIK-AGHWLPMSHP-QVLAAAVAEFVDA 291 (582)
T ss_pred cCceEEEEeCCCcccCHHHhccccccCC----cceEEEcc-CCCcchhhCh-hHHHHHHHHHHHh
Confidence 8999999999999999988877765543 25666765 6898764443 4677888888875
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.3e-09 Score=110.08 Aligned_cols=353 Identities=18% Similarity=0.145 Sum_probs=177.2
Q ss_pred HHHHhhcCccccce-EEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCC
Q 003363 85 LLQDFTNISSIDKA-WTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP 163 (826)
Q Consensus 85 l~~~~~~~~~~~~~-~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SP 163 (826)
|-+.+..+|+...+ -+.-.-.|-|..+.|.- .+.+++..|+.. ....++|... ..+.-..+||
T Consensus 6 lk~~~~~lPst~Rg~~~~ig~dpkgd~ilY~n----------Gksv~ir~i~~~-~~~~iYtEH~-----~~vtVAkySP 69 (603)
T KOG0318|consen 6 LKETFASLPSTERGVPIIIGGDPKGDNILYTN----------GKSVIIRNIDNP-ASVDIYTEHA-----HQVTVAKYSP 69 (603)
T ss_pred hhhhccCCCcccCCcceEeccCCCCCeEEEeC----------CCEEEEEECCCc-cceeeecccc-----ceeEEEEeCC
Confidence 44566667776543 22334578899999962 234555555332 2234555444 3577789999
Q ss_pred CCCeEEEEecCCCCCCeEEEEecCCceeEEEe-cCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCC
Q 003363 164 SGSKLLVVRNPENESPIQFELWSQSQLEKEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK 242 (826)
Q Consensus 164 dG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~ 242 (826)
+|-++|-- +...-.+||+.-+...+.. .-+-..|.| ..++|++|+++|+-+.|.+..-...|....+.
T Consensus 70 sG~yiASG-----D~sG~vRIWdtt~~~hiLKnef~v~aG~I------~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~ 138 (603)
T KOG0318|consen 70 SGFYIASG-----DVSGKVRIWDTTQKEHILKNEFQVLAGPI------KDISWDFDSKRIAAVGEGRERFGHVFLWDSGN 138 (603)
T ss_pred CceEEeec-----CCcCcEEEEeccCcceeeeeeeeeccccc------ccceeCCCCcEEEEEecCccceeEEEEecCCC
Confidence 99988863 3333578884322222211 111223444 89999999999999887653211111111111
Q ss_pred CCCCCccCCCCCCcceeecCCC-ccCCCccCceEEEEEccCCceEeccCCC--CCCccceEEEeeCCCCCccEEEEEeec
Q 003363 243 GGSSDKDCNSWKGQGDWEEDWG-ETYAGKRQPSLFVININSGEVQAVKGIP--KSLSVGQVVWAPLNEGLHQYLVFVGWS 319 (826)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~g-~~~~~~~~~~l~v~d~~~g~~~~l~~~~--~~~~~~~~~wSPDg~~~~~~lvf~~~~ 319 (826)
..-....+..-.....+.+.-- +..++..++.+-.++ |.+-..+-+. ..--+..+.|||||+. ++-++
T Consensus 139 SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffe---GPPFKFk~s~r~HskFV~~VRysPDG~~----Fat~g-- 209 (603)
T KOG0318|consen 139 SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFE---GPPFKFKSSFREHSKFVNCVRYSPDGSR----FATAG-- 209 (603)
T ss_pred ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEee---CCCeeeeecccccccceeeEEECCCCCe----EEEec--
Confidence 1001111111111111211100 000000111111111 1111110000 1113557899999998 66665
Q ss_pred CcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc-eecC---CCCccccCceecCCCCEEEEEeccCCC
Q 003363 320 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLT---ESISSAFFPRFSPDGKFLVFLSAKSSV 395 (826)
Q Consensus 320 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt---~~~~~~~~p~~SpDG~~l~f~s~~~~~ 395 (826)
.+..+|++|= .+|+. -.|. .+.+.++...||||+++|+-.+.+.
T Consensus 210 -------------sDgki~iyDG-----------------ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk-- 257 (603)
T KOG0318|consen 210 -------------SDGKIYIYDG-----------------KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK-- 257 (603)
T ss_pred -------------CCccEEEEcC-----------------CCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc--
Confidence 3347888884 45543 3444 4578899999999999999888663
Q ss_pred CCCCCcccceEEEEeCCCCCCCC-cccc----eeeeeeeee-----------------ccCCC---CCcccccCCCCCCc
Q 003363 396 DSGAHSATDSLHRIDWPTNGNFS-SLEK----IVDVIPVVQ-----------------CAEGD---CFPGLYSSSILSNP 450 (826)
Q Consensus 396 ~~g~~~~~~~l~~~d~~~~~~~~-~~~~----~~~~~~~~~-----------------~~~~~---~f~g~~~~~~~~~~ 450 (826)
.+.+||..++...+ +..+ ...+--+|+ ..... .+.| +..++..+.
T Consensus 258 ---------t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~G-HnK~ITaLt 327 (603)
T KOG0318|consen 258 ---------TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISG-HNKSITALT 327 (603)
T ss_pred ---------eEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecc-cccceeEEE
Confidence 35666666654311 1100 111111221 11100 1111 333556777
Q ss_pred cccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 003363 451 WLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 451 ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 521 (826)
-++||++|| +.+ -+..|..++..+|.--++......-....+...+..-+++.+=.++ |.+.++.
T Consensus 328 v~~d~~~i~-Sgs--yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~---l~~~~~~ 392 (603)
T KOG0318|consen 328 VSPDGKTIY-SGS--YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDT---LRVISLK 392 (603)
T ss_pred EcCCCCEEE-eec--cCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCe---EEEEecc
Confidence 889998775 333 3446777788888887876443322333455555333334333333 5555543
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-10 Score=115.28 Aligned_cols=277 Identities=12% Similarity=0.060 Sum_probs=163.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
..+....||++|++||..+.. ...-+|.+..+.+ .++...-.+.+..| ..+.||||.++|+--..+...
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD--~Taiiw~v~~d~~-~kl~~tlvgh~~~V------~yi~wSPDdryLlaCg~~e~~-- 293 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKD--STAIIWIVVYDVH-FKLKKTLVGHSQPV------SYIMWSPDDRYLLACGFDEVL-- 293 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCC--ceEEEEEEecCcc-eeeeeeeecccCce------EEEEECCCCCeEEecCchHhe--
Confidence 458999999999999986543 3344666665555 22222222333344 789999999998775544432
Q ss_pred CCccCCCCCCCCCCccC-CCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003363 234 PTFSLGSTKGGSSDKDC-NSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (826)
..|+...+..-...+.. ......-.|-||.-...+|..+.+++.||+++.......+.. ...+.+++.++||++
T Consensus 294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr-~~~v~dlait~Dgk~---- 368 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR-DPKVHDLAITYDGKY---- 368 (519)
T ss_pred eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc-cceeEEEEEcCCCcE----
Confidence 34443333322222221 222335678999666677888899999999987655443211 234678999999999
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
++.+. .+..|..++. ++...+.+-.....+.+...|.||++++..-.
T Consensus 369 vl~v~---------------~d~~i~l~~~-----------------e~~~dr~lise~~~its~~iS~d~k~~LvnL~- 415 (519)
T KOG0293|consen 369 VLLVT---------------VDKKIRLYNR-----------------EARVDRGLISEEQPITSFSISKDGKLALVNLQ- 415 (519)
T ss_pred EEEEe---------------cccceeeech-----------------hhhhhhccccccCceeEEEEcCCCcEEEEEcc-
Confidence 87776 2236777776 55555545555566888999999997554332
Q ss_pred CCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003363 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (826)
+..+++||+.-....+.-.+... +.| +-.-+|.--...++.+. .-+..+|.
T Consensus 416 ----------~qei~LWDl~e~~lv~kY~Ghkq----------~~f-------iIrSCFgg~~~~fiaSG--SED~kvyI 466 (519)
T KOG0293|consen 416 ----------DQEIHLWDLEENKLVRKYFGHKQ----------GHF-------IIRSCFGGGNDKFIASG--SEDSKVYI 466 (519)
T ss_pred ----------cCeeEEeecchhhHHHHhhcccc----------cce-------EEEeccCCCCcceEEec--CCCceEEE
Confidence 25689999874322221111110 000 11224433232354443 33457888
Q ss_pred EECCCCcEEEecCCCC-CeeeEEEeecCCEEEEEEeC
Q 003363 473 VNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVSSS 508 (826)
Q Consensus 473 vdl~tg~~~~lt~~~~-~~~~~~~s~dg~~l~~~~s~ 508 (826)
++..+|+......+.. .+....++|.....++.+++
T Consensus 467 Whr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasD 503 (519)
T KOG0293|consen 467 WHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASD 503 (519)
T ss_pred EEccCCceeEeecCCcceeeEEecCCCCHHHhhccCC
Confidence 8888888765544433 44545555555444444443
|
|
| >PRK10439 enterobactin/ferric enterobactin esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-10 Score=125.09 Aligned_cols=195 Identities=15% Similarity=0.143 Sum_probs=122.6
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCC----cEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G----~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
|.+...++|.|+++. .+++|+|+++||..+.... .....+..|.+.| .+++.+|.......... ++.
T Consensus 191 g~~r~v~VY~P~~y~-~~~~PvlyllDG~~w~~~~-~~~~~ld~li~~g~i~P~ivV~id~~~~~~R~~e----l~~--- 261 (411)
T PRK10439 191 GNSRRVWIYTTGDAA-PEERPLAILLDGQFWAESM-PVWPALDSLTHRGQLPPAVYLLIDAIDTTHRSQE----LPC--- 261 (411)
T ss_pred CCceEEEEEECCCCC-CCCCCEEEEEECHHhhhcC-CHHHHHHHHHHcCCCCceEEEEECCCCccccccc----CCc---
Confidence 556788999999875 6789999999997654322 2234455666677 35678875321111111 111
Q ss_pred cchHH-HH-HHHHHHHHHcCC--CCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhh
Q 003363 649 SQDVN-DV-LTAIDHVIDMGL--ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 724 (826)
Q Consensus 649 ~~~~~-D~-~~~i~~l~~~~~--~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~ 724 (826)
..... .+ .+.+.++.++.. .|+++.+|+|+||||+.|++++.++|++|.++++.+|.+-+... .
T Consensus 262 ~~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ww~~~------------~ 329 (411)
T PRK10439 262 NADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSFWWPHR------------G 329 (411)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccceecCCc------------c
Confidence 01111 12 233345444422 47889999999999999999999999999999999986421100 0
Q ss_pred hccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCC
Q 003363 725 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804 (826)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 804 (826)
.. ... ...+.+... ....-...++|-+|..|... ....+++++.|+++|.++++.+++| ||..
T Consensus 330 --~~--------~~~-~l~~~l~~~----~~~~~~lr~~i~~G~~E~~~-~~~~~~l~~~L~~~G~~~~~~~~~G-GHd~ 392 (411)
T PRK10439 330 --GQ--------QEG-VLLEQLKAG----EVSARGLRIVLEAGRREPMI-MRANQALYAQLHPAGHSVFWRQVDG-GHDA 392 (411)
T ss_pred --CC--------chh-HHHHHHHhc----ccCCCCceEEEeCCCCCchH-HHHHHHHHHHHHHCCCcEEEEECCC-CcCH
Confidence 00 000 011111110 01112346888899998543 4678899999999999999999987 6965
Q ss_pred C
Q 003363 805 E 805 (826)
Q Consensus 805 ~ 805 (826)
.
T Consensus 393 ~ 393 (411)
T PRK10439 393 L 393 (411)
T ss_pred H
Confidence 3
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-09 Score=114.12 Aligned_cols=239 Identities=12% Similarity=0.115 Sum_probs=132.7
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~-~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (826)
++|||+.+..... ....++.+++.+ ++.. .+... .......|+|||+.++.....+ + . +
T Consensus 38 ~~~dg~~l~~~~~--------~~~~v~~~d~~~--~~~~~~~~~~------~~~~~~~~~~~g~~l~~~~~~~-~--~-l 97 (300)
T TIGR03866 38 LSKDGKLLYVCAS--------DSDTIQVIDLAT--GEVIGTLPSG------PDPELFALHPNGKILYIANEDD-N--L-V 97 (300)
T ss_pred ECCCCCEEEEEEC--------CCCeEEEEECCC--CcEEEeccCC------CCccEEEECCCCCEEEEEcCCC-C--e-E
Confidence 4789887644322 123566666432 2222 22211 2345678999999876543222 2 2 3
Q ss_pred EEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceee
Q 003363 183 ELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (826)
Q Consensus 183 ~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (826)
.+|+ .++........... .++.|+|||+.+++.+...
T Consensus 98 ~~~d~~~~~~~~~~~~~~~~----------~~~~~~~dg~~l~~~~~~~------------------------------- 136 (300)
T TIGR03866 98 TVIDIETRKVLAEIPVGVEP----------EGMAVSPDGKIVVNTSETT------------------------------- 136 (300)
T ss_pred EEEECCCCeEEeEeeCCCCc----------ceEEECCCCCEEEEEecCC-------------------------------
Confidence 4442 22222222222222 5789999999988864321
Q ss_pred cCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEE
Q 003363 261 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 340 (826)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~ 340 (826)
..++++|..+++.... .........++|+|||+. |++.+. ....|+.+
T Consensus 137 ------------~~~~~~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~----l~~~~~--------------~~~~v~i~ 184 (300)
T TIGR03866 137 ------------NMAHFIDTKTYEIVDN--VLVDQRPRFAEFTADGKE----LWVSSE--------------IGGTVSVI 184 (300)
T ss_pred ------------CeEEEEeCCCCeEEEE--EEcCCCccEEEECCCCCE----EEEEcC--------------CCCEEEEE
Confidence 2455678777665432 122224457899999997 766541 22368888
Q ss_pred EcccccchhhhhhhhcCCCCCCcc-eecCCC-------CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCC
Q 003363 341 RVSLYKSEASELELKESSSEDLPV-VNLTES-------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 412 (826)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~-------~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~ 412 (826)
|+ .+++. ..++.. ........|||||++++..... ...|.+||..
T Consensus 185 d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~----------~~~i~v~d~~ 237 (300)
T TIGR03866 185 DV-----------------ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP----------ANRVAVVDAK 237 (300)
T ss_pred Ec-----------------CcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC----------CCeEEEEECC
Confidence 87 44432 333211 1123457899999986543322 2468999987
Q ss_pred CCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcE-EEec
Q 003363 413 TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL-LRIT 484 (826)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~-~~lt 484 (826)
+++.... ... . ..+..+.|+|||+.|+.+... ...|.++|+.+++. .++.
T Consensus 238 ~~~~~~~----------~~~--~--------~~~~~~~~~~~g~~l~~~~~~--~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 238 TYEVLDY----------LLV--G--------QRVWQLAFTPDEKYLLTTNGV--SNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred CCcEEEE----------EEe--C--------CCcceEEECCCCCEEEEEcCC--CCeEEEEECCCCcEEEEEE
Confidence 6543211 000 0 123467899999987655332 33577888888885 4443
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.4e-10 Score=112.64 Aligned_cols=177 Identities=19% Similarity=0.200 Sum_probs=120.5
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHH
Q 003363 578 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT 657 (826)
Q Consensus 578 ~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~ 657 (826)
..++.|. ..+.+|+|||+||.. .....|....+.+++.||+|+.+|+....+ .....+++++.+
T Consensus 6 l~v~~P~---~~g~yPVv~f~~G~~--~~~s~Ys~ll~hvAShGyIVV~~d~~~~~~-----------~~~~~~~~~~~~ 69 (259)
T PF12740_consen 6 LLVYYPS---SAGTYPVVLFLHGFL--LINSWYSQLLEHVASHGYIVVAPDLYSIGG-----------PDDTDEVASAAE 69 (259)
T ss_pred eEEEecC---CCCCcCEEEEeCCcC--CCHHHHHHHHHHHHhCceEEEEecccccCC-----------CCcchhHHHHHH
Confidence 3577887 578899999999965 223458888999999999999999654221 122335788888
Q ss_pred HHHHHHHc--C------CCCCCcEEEEEecchHHHHHHHHHhC-----CCceeEEEecCCccchhhhccCCCCCCchhhh
Q 003363 658 AIDHVIDM--G------LANPSKVTVVGGSHGGFLTTHLIGQA-----PDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 724 (826)
Q Consensus 658 ~i~~l~~~--~------~~d~~rv~l~G~S~GG~~a~~~a~~~-----p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~ 724 (826)
.++|+.+. . ..|-+||+|+|||.||-+++.++..+ +.+|++++++.|+-.+...... .
T Consensus 70 vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~~~~-~-------- 140 (259)
T PF12740_consen 70 VIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKGSQT-E-------- 140 (259)
T ss_pred HHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccccccccCC-C--------
Confidence 99998773 1 25888999999999999999998876 4589999999998632211000 0
Q ss_pred hccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCC---------CCCc-HHHHHHHHHHHhCCCCEEE
Q 003363 725 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL---------RVPV-SNGLQYARALREKGVETKV 794 (826)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~---------~vp~-~~~~~~~~~l~~~g~~~~~ 794 (826)
|. . ....| ..-+...|+|++-..-.. ..|. .+-.++|++++ .+.-.
T Consensus 141 -------------P~-----v-~~~~p--~s~~~~~P~lviGtGLg~~~~~~~~~~CaP~g~n~~~Ff~~~~---~p~~~ 196 (259)
T PF12740_consen 141 -------------PP-----V-LTYTP--QSFDFSMPALVIGTGLGGEPRNPLFPPCAPAGVNYREFFDECK---PPSWH 196 (259)
T ss_pred -------------Cc-----c-ccCcc--cccCCCCCeEEEecccCcccccccCCCCCCCCCCHHHHHHhcC---CCEEE
Confidence 00 0 00001 111245899998766553 2232 33456777765 36777
Q ss_pred EEeCCCCCC
Q 003363 795 IVFPNDVHG 803 (826)
Q Consensus 795 ~~~p~~~H~ 803 (826)
++..+.||.
T Consensus 197 ~v~~~~GH~ 205 (259)
T PF12740_consen 197 FVAKDYGHM 205 (259)
T ss_pred EEeCCCCch
Confidence 788999996
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-09 Score=110.19 Aligned_cols=149 Identities=17% Similarity=0.290 Sum_probs=109.3
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
.++....++-|++.++...+.+ + .+.+. .+++..+...--..+ ..+..|||||+++.. +
T Consensus 360 ~~VrY~r~~~~~e~~vigt~dg-D---~l~iyd~~~~e~kr~e~~lg~I----------~av~vs~dGK~~vva-N---- 420 (668)
T COG4946 360 GGVRYRRIQVDPEGDVIGTNDG-D---KLGIYDKDGGEVKRIEKDLGNI----------EAVKVSPDGKKVVVA-N---- 420 (668)
T ss_pred CceEEEEEccCCcceEEeccCC-c---eEEEEecCCceEEEeeCCccce----------EEEEEcCCCcEEEEE-c----
Confidence 3588888888888666543322 2 23444 444544443222233 788999999988864 2
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
.+.+||++|+++|+++.+. .....-+..+.|+|++++
T Consensus 421 ---------------------------------------dr~el~vididngnv~~id-kS~~~lItdf~~~~nsr~--- 457 (668)
T COG4946 421 ---------------------------------------DRFELWVIDIDNGNVRLID-KSEYGLITDFDWHPNSRW--- 457 (668)
T ss_pred ---------------------------------------CceEEEEEEecCCCeeEec-ccccceeEEEEEcCCcee---
Confidence 2368999999999999884 233345778999999999
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEec
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~ 391 (826)
|+|.-. .|+. ..+|.++|. ++++...+|.......+|+|-|||++|+|++.
T Consensus 458 -iAYafP------~gy~-----tq~Iklydm-----------------~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 458 -IAYAFP------EGYY-----TQSIKLYDM-----------------DGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred -EEEecC------ccee-----eeeEEEEec-----------------CCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 999752 2221 136888888 88899999999999999999999999999998
Q ss_pred cC
Q 003363 392 KS 393 (826)
Q Consensus 392 ~~ 393 (826)
+.
T Consensus 509 Rs 510 (668)
T COG4946 509 RS 510 (668)
T ss_pred cc
Confidence 85
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-09 Score=104.71 Aligned_cols=238 Identities=16% Similarity=0.138 Sum_probs=143.9
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003363 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (826)
Q Consensus 105 s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (826)
|+||.+. ++ .+.++.+.++++.++ ...++|..+. ..+..+++|||.++|+.-+.+. .+.+
T Consensus 72 s~dg~~a-lS--------~swD~~lrlWDl~~g-~~t~~f~GH~-----~dVlsva~s~dn~qivSGSrDk-----Tikl 131 (315)
T KOG0279|consen 72 SSDGNFA-LS--------ASWDGTLRLWDLATG-ESTRRFVGHT-----KDVLSVAFSTDNRQIVSGSRDK-----TIKL 131 (315)
T ss_pred ccCCceE-Ee--------ccccceEEEEEecCC-cEEEEEEecC-----CceEEEEecCCCceeecCCCcc-----eeee
Confidence 7888644 32 234667888887443 4456666665 6799999999999998755443 5778
Q ss_pred ecCCceeEEEecCCCccccccCCCcccceeecCCCC--eEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecC
Q 003363 185 WSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDET--LIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 262 (826)
Q Consensus 185 ~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~--~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 262 (826)
|+.-...+.+-......+ |+..+.|||... .|+-.+.
T Consensus 132 wnt~g~ck~t~~~~~~~~------WVscvrfsP~~~~p~Ivs~s~----------------------------------- 170 (315)
T KOG0279|consen 132 WNTLGVCKYTIHEDSHRE------WVSCVRFSPNESNPIIVSASW----------------------------------- 170 (315)
T ss_pred eeecccEEEEEecCCCcC------cEEEEEEcCCCCCcEEEEccC-----------------------------------
Confidence 843222333332222233 559999999963 3333322
Q ss_pred CCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEc
Q 003363 263 WGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 342 (826)
Q Consensus 263 ~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~ 342 (826)
+..+.+||+.+-+++.-- ......+..+++||||.. .++.+ ..+.++++|+
T Consensus 171 ---------DktvKvWnl~~~~l~~~~-~gh~~~v~t~~vSpDGsl----casGg---------------kdg~~~LwdL 221 (315)
T KOG0279|consen 171 ---------DKTVKVWNLRNCQLRTTF-IGHSGYVNTVTVSPDGSL----CASGG---------------KDGEAMLWDL 221 (315)
T ss_pred ---------CceEEEEccCCcchhhcc-ccccccEEEEEECCCCCE----EecCC---------------CCceEEEEEc
Confidence 246889999988776551 233446788999999997 66644 4568999998
Q ss_pred ccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCC-ccc
Q 003363 343 SLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLE 421 (826)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~-~~~ 421 (826)
+.++.-.-.+....+.+..|||.-=.|+-... ..|.+||+.++.... +..
T Consensus 222 -----------------~~~k~lysl~a~~~v~sl~fspnrywL~~at~------------~sIkIwdl~~~~~v~~l~~ 272 (315)
T KOG0279|consen 222 -----------------NEGKNLYSLEAFDIVNSLCFSPNRYWLCAATA------------TSIKIWDLESKAVVEELKL 272 (315)
T ss_pred -----------------cCCceeEeccCCCeEeeEEecCCceeEeeccC------------CceEEEeccchhhhhhccc
Confidence 34433222344556889999998655543321 348999998865431 111
Q ss_pred ceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003363 422 KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (826)
Q Consensus 422 ~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~v 473 (826)
+. .-+ .. .-.+.+| ..++||+||.+||.. ..++..++|.+
T Consensus 273 d~--~g~-----s~-~~~~~~c---lslaws~dG~tLf~g-~td~~irv~qv 312 (315)
T KOG0279|consen 273 DG--IGP-----SS-KAGDPIC---LSLAWSADGQTLFAG-YTDNVIRVWQV 312 (315)
T ss_pred cc--ccc-----cc-ccCCcEE---EEEEEcCCCcEEEee-ecCCcEEEEEe
Confidence 11 000 00 0000122 267899999988643 33444455544
|
|
| >KOG2984 consensus Predicted hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-11 Score=113.52 Aligned_cols=213 Identities=16% Similarity=0.166 Sum_probs=129.7
Q ss_pred EEEEEcCCCCCCCCccchHHHHHH-HHCCcEEEEECCCCCCCCchhhhhcCCCCCCc--chHHHHHHHHHHHHHcCCCCC
Q 003363 594 LIVVLHGGPHSVSLSSYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS--QDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~l-a~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~--~~~~D~~~~i~~l~~~~~~d~ 670 (826)
.|+++.|.-++ +...|..++..+ ...-+.+++.|.+| ||.+-. |..... .-.+|...+++-+.. ++.
T Consensus 44 ~iLlipGalGs-~~tDf~pql~~l~k~l~~TivawDPpG---YG~SrP---P~Rkf~~~ff~~Da~~avdLM~a---Lk~ 113 (277)
T KOG2984|consen 44 YILLIPGALGS-YKTDFPPQLLSLFKPLQVTIVAWDPPG---YGTSRP---PERKFEVQFFMKDAEYAVDLMEA---LKL 113 (277)
T ss_pred eeEeccccccc-ccccCCHHHHhcCCCCceEEEEECCCC---CCCCCC---CcccchHHHHHHhHHHHHHHHHH---hCC
Confidence 47777775443 355676655544 33348999999999 665532 111111 124666667666554 356
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccc-----hhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHH
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN-----LALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR 745 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (826)
.++.|+|+|-||..++.+|+++++.+...|+.++..- ...+-+..+...|....... ....|........++.
T Consensus 114 ~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRdv~kWs~r~R~P--~e~~Yg~e~f~~~wa~ 191 (277)
T KOG2984|consen 114 EPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRDVNKWSARGRQP--YEDHYGPETFRTQWAA 191 (277)
T ss_pred CCeeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHHHhhhhhhhcch--HHHhcCHHHHHHHHHH
Confidence 8999999999999999999999998887776655321 11222333333443111000 0000100000011111
Q ss_pred H-------hhcC----cccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHH
Q 003363 746 F-------HSKS----PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESF 814 (826)
Q Consensus 746 ~-------~~~s----p~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~ 814 (826)
| .... -...+.+++||+||+||+.|+.++-.+.--+-..+.. .++.++|+++|.+...-. .++.
T Consensus 192 wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~hG~kDp~~~~~hv~fi~~~~~~----a~~~~~peGkHn~hLrya-~eFn 266 (277)
T KOG2984|consen 192 WVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMHGGKDPFCGDPHVCFIPVLKSL----AKVEIHPEGKHNFHLRYA-KEFN 266 (277)
T ss_pred HHHHHHHHhhcCCCchHhhhcccccCCeeEeeCCcCCCCCCCCccchhhhccc----ceEEEccCCCcceeeech-HHHH
Confidence 1 1100 0134688999999999999999988876555444433 789999999999875544 3788
Q ss_pred HHHHHHHHH
Q 003363 815 LNIGLWFKK 823 (826)
Q Consensus 815 ~~i~~w~~~ 823 (826)
..+++||++
T Consensus 267 klv~dFl~~ 275 (277)
T KOG2984|consen 267 KLVLDFLKS 275 (277)
T ss_pred HHHHHHHhc
Confidence 889999975
|
|
| >KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.6e-11 Score=108.20 Aligned_cols=182 Identities=15% Similarity=0.155 Sum_probs=133.0
Q ss_pred CCCCcEEEEEcCCCCCCCCccc-hHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~-~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (826)
....|++||+|||.+....... ......+..+||+|..++|--++. ...-...+.++...++|+++..
T Consensus 64 ~~~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~q----------~htL~qt~~~~~~gv~filk~~- 132 (270)
T KOG4627|consen 64 TNQAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCPQ----------VHTLEQTMTQFTHGVNFILKYT- 132 (270)
T ss_pred CCCccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCcCcc----------cccHHHHHHHHHHHHHHHHHhc-
Confidence 3567999999999987544322 234556678999999999876432 2234456889999999999874
Q ss_pred CCCCcEEEEEecchHHHHHHHHHh-CCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHH
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRF 746 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (826)
-..+.+.+-|||.|+.+++.+.++ +..++.++++.++++++..+.......+. +. .. +..
T Consensus 133 ~n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~EL~~te~g~dl------gL---------t~----~~a 193 (270)
T KOG4627|consen 133 ENTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRELSNTESGNDL------GL---------TE----RNA 193 (270)
T ss_pred ccceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHHHhCCcccccc------Cc---------cc----chh
Confidence 234678999999999999998875 34589999999999998877544322111 10 00 111
Q ss_pred hhcCc-ccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCC
Q 003363 747 HSKSP-ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804 (826)
Q Consensus 747 ~~~sp-~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 804 (826)
...|+ +.....++.|+|++.|++|..--++|.+.+...+++ ..+..|++.+|.-
T Consensus 194 e~~Scdl~~~~~v~~~ilVv~~~~espklieQnrdf~~q~~~----a~~~~f~n~~hy~ 248 (270)
T KOG4627|consen 194 ESVSCDLWEYTDVTVWILVVAAEHESPKLIEQNRDFADQLRK----ASFTLFKNYDHYD 248 (270)
T ss_pred hhcCccHHHhcCceeeeeEeeecccCcHHHHhhhhHHHHhhh----cceeecCCcchhh
Confidence 22333 234567889999999999988888999999999987 6788999999963
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-08 Score=101.88 Aligned_cols=268 Identities=12% Similarity=0.168 Sum_probs=153.4
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (826)
++|+++.+ |+....+ ....+-.+.++...+....+-....+ ......++.++||+.|+...-. .+.-.++.
T Consensus 47 ~~~~~~~L-Y~v~~~~-----~~ggvaay~iD~~~G~Lt~ln~~~~~--g~~p~yvsvd~~g~~vf~AnY~-~g~v~v~p 117 (346)
T COG2706 47 VNPDQRHL-YVVNEPG-----EEGGVAAYRIDPDDGRLTFLNRQTLP--GSPPCYVSVDEDGRFVFVANYH-SGSVSVYP 117 (346)
T ss_pred ECCCCCEE-EEEEecC-----CcCcEEEEEEcCCCCeEEEeeccccC--CCCCeEEEECCCCCEEEEEEcc-CceEEEEE
Confidence 35777666 5554432 23455566665544443333211111 1234789999999988655443 35555555
Q ss_pred EecCCceeEEEecCCCccccccCCCc-----ccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcce
Q 003363 184 LWSQSQLEKEFHVPQTVHGSVYADGW-----FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 258 (826)
Q Consensus 184 i~~~~~~~~~~~~~~~~~g~v~~~~~-----~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (826)
+...|.....++......... .+. .....+.||++.|+...-
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p--~~rQ~~~h~H~a~~tP~~~~l~v~DL------------------------------- 164 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGP--HERQESPHVHSANFTPDGRYLVVPDL------------------------------- 164 (346)
T ss_pred cccCCccccceeeeecCCCCC--CccccCCccceeeeCCCCCEEEEeec-------------------------------
Confidence 555565544433211110000 010 145679999987765421
Q ss_pred eecCCCccCCCccCceEEEEEccCCceEecc--CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCc
Q 003363 259 WEEDWGETYAGKRQPSLFVININSGEVQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 336 (826)
Q Consensus 259 ~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~ 336 (826)
+...|++++++.|.....+ ..+...+..+++|.|+|| ++|...+- +..-.
T Consensus 165 ------------G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k-----~aY~v~EL-----------~stV~ 216 (346)
T COG2706 165 ------------GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGK-----YAYLVNEL-----------NSTVD 216 (346)
T ss_pred ------------CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCc-----EEEEEecc-----------CCEEE
Confidence 2356888888888766552 123344677999999999 56655332 22223
Q ss_pred eEEEEcccccchhhhhhhhcCCCCCCcceecC---------CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEE
Q 003363 337 LYAVRVSLYKSEASELELKESSSEDLPVVNLT---------ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLH 407 (826)
Q Consensus 337 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt---------~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~ 407 (826)
+|.++- ..++.+.|. .+.........||||++| |.+++. . ..|.
T Consensus 217 v~~y~~-----------------~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFL-YasNRg-------~--dsI~ 269 (346)
T COG2706 217 VLEYNP-----------------AVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFL-YASNRG-------H--DSIA 269 (346)
T ss_pred EEEEcC-----------------CCceEEEeeeeccCccccCCCCceeEEEECCCCCEE-EEecCC-------C--CeEE
Confidence 444443 334444331 123346678899999975 788884 1 3455
Q ss_pred E--EeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecC
Q 003363 408 R--IDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 485 (826)
Q Consensus 408 ~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~ 485 (826)
. +|-.++... ++..+ +..+.+ ...+.++++|+.|+++...++...+|.+|..||++..+..
T Consensus 270 ~f~V~~~~g~L~--------~~~~~--~teg~~-------PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 270 VFSVDPDGGKLE--------LVGIT--PTEGQF-------PRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred EEEEcCCCCEEE--------EEEEe--ccCCcC-------CccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 5 444443321 11111 112222 3467789999999888887888899999999999988765
|
|
| >COG2936 Predicted acyl esterases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.2e-10 Score=122.96 Aligned_cols=218 Identities=19% Similarity=0.215 Sum_probs=141.6
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC--cc-chHHH---HHHHHCCcEEEEECCCCCCCCchhhhhcCC
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL--SS-YSKSL---AFLSSVGYSLLIVNYRGSLGFGEEALQSLP 644 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~--~~-~~~~~---~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~ 644 (826)
.||+.|..-+|.|+ ..++.|+++..+-.|..... .. ..... ..++.+||+|+..|.||++++...+..
T Consensus 27 RDGvrL~~dIy~Pa---~~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~~SeG~~~~--- 100 (563)
T COG2936 27 RDGVRLAADIYRPA---GAGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRGGSEGVFDP--- 100 (563)
T ss_pred cCCeEEEEEEEccC---CCCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccccccCCcccce---
Confidence 47899999999998 56899999999844443221 11 11112 368999999999999998776555421
Q ss_pred CCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhcc----CCC---C
Q 003363 645 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG----TTD---I 717 (826)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~----~~~---~ 717 (826)
+...+.+|-.+.|+||.++++.+ .+|+++|.||+|+..+++|+..|.-+|+++..++..|...-.. ... .
T Consensus 101 --~~~~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~y~d~~~~~G~~~~~~~ 177 (563)
T COG2936 101 --ESSREAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDRYRDDAFYGGGAELNFN 177 (563)
T ss_pred --eccccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeeccccccccccccccccCcchhhhhh
Confidence 22247899999999999998876 7899999999999999999999989999998888776421100 000 0
Q ss_pred CCchh-------------------------------hhhccCcCCccC----CCCCChhhHHHHhhcCcccccCCCCCcE
Q 003363 718 PDWCY-------------------------------VESYGSKGKDSF----TESPSVEDLTRFHSKSPISHISKVKTPT 762 (826)
Q Consensus 718 ~~~~~-------------------------------~~~~~~~~~~~~----~~~~~~~~~~~~~~~sp~~~~~~i~~Pv 762 (826)
..|.. ......+....+ ...|..+ ..|.+.+-.....++++|+
T Consensus 178 ~~W~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~~~hp~~d--dfW~~~~~~~d~~~i~vP~ 255 (563)
T COG2936 178 LGWALTMLAPQPLTRIRPARLDRLAPLRVGAERWRDAPTELLEGEPYFLELWLEHPLRD--DFWRRGDRVADLSKIKVPA 255 (563)
T ss_pred HHHHhhhcccCcccccccccccccchhhhhhccccccccchhccCcccchhhhcCCCcc--chhhccCcccccccCCCcE
Confidence 01110 000000000000 0011111 1233445566788999999
Q ss_pred EEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCC
Q 003363 763 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804 (826)
Q Consensus 763 Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 804 (826)
|.+.|-.|... ..+.+++..++.. +..+++-|= .|.-
T Consensus 256 L~i~gW~D~~l--~~~~~~~~~~~~r--~~~lvvgPw-~H~~ 292 (563)
T COG2936 256 LVIGGWSDGYL--HTAIKLFAFLRSR--PVKLVVGPW-THGG 292 (563)
T ss_pred EEEcccccccc--cchHHHhhhcccC--CceeEEccc-ccCC
Confidence 99999999754 5666777777664 455555443 4653
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-08 Score=110.13 Aligned_cols=256 Identities=9% Similarity=0.076 Sum_probs=136.3
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003363 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (826)
Q Consensus 103 ~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (826)
..||||+.++.. ... ...+..++++ +.+........+.+ ......+++|||++|+.....+ +.-.+|
T Consensus 41 ~~spd~~~lyv~-~~~-------~~~i~~~~~~-~~g~l~~~~~~~~~---~~p~~i~~~~~g~~l~v~~~~~-~~v~v~ 107 (330)
T PRK11028 41 VISPDKRHLYVG-VRP-------EFRVLSYRIA-DDGALTFAAESPLP---GSPTHISTDHQGRFLFSASYNA-NCVSVS 107 (330)
T ss_pred EECCCCCEEEEE-ECC-------CCcEEEEEEC-CCCceEEeeeecCC---CCceEEEECCCCCEEEEEEcCC-CeEEEE
Confidence 348999877443 221 2345555554 22222111111111 2456789999999887665432 333333
Q ss_pred EEecCCceeEEEe-cC--CCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCccee
Q 003363 183 ELWSQSQLEKEFH-VP--QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (826)
Q Consensus 183 ~i~~~~~~~~~~~-~~--~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (826)
.+..++....... .. ... ..+.++|||++|+....
T Consensus 108 ~~~~~g~~~~~~~~~~~~~~~----------~~~~~~p~g~~l~v~~~-------------------------------- 145 (330)
T PRK11028 108 PLDKDGIPVAPIQIIEGLEGC----------HSANIDPDNRTLWVPCL-------------------------------- 145 (330)
T ss_pred EECCCCCCCCceeeccCCCcc----------cEeEeCCCCCEEEEeeC--------------------------------
Confidence 3332332222221 11 122 46789999998765432
Q ss_pred ecCCCccCCCccCceEEEEEccC-CceEecc----CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCC
Q 003363 260 EEDWGETYAGKRQPSLFVININS-GEVQAVK----GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 334 (826)
Q Consensus 260 ~~d~g~~~~~~~~~~l~v~d~~~-g~~~~l~----~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~ 334 (826)
....|.++|+++ +.+.... ..+....+.+++|+|||+. + |+.++. .
T Consensus 146 -----------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~----l-yv~~~~-------------~ 196 (330)
T PRK11028 146 -----------KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQY----A-YCVNEL-------------N 196 (330)
T ss_pred -----------CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCE----E-EEEecC-------------C
Confidence 236799999875 4332110 0122334667899999995 4 555332 2
Q ss_pred CceEEEEcccccchhhhhhhhcCCCCCCcce---ecC---C---CCccccCceecCCCCEEEEEeccCCCCCCCCcccce
Q 003363 335 CALYAVRVSLYKSEASELELKESSSEDLPVV---NLT---E---SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDS 405 (826)
Q Consensus 335 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~Lt---~---~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~ 405 (826)
..|..++++. .+++.+ .+. . +........++|||++|+ ++++. ...
T Consensus 197 ~~v~v~~~~~---------------~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ly-v~~~~---------~~~ 251 (330)
T PRK11028 197 SSVDVWQLKD---------------PHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLY-ACDRT---------ASL 251 (330)
T ss_pred CEEEEEEEeC---------------CCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEE-EecCC---------CCe
Confidence 3677777621 122221 111 1 011122467899999764 55442 246
Q ss_pred EEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003363 406 LHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 483 (826)
Q Consensus 406 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~l 483 (826)
|.+++++..+... .++...... .....+.++|||++||++....+...+|.+|..+|.++.+
T Consensus 252 I~v~~i~~~~~~~------~~~~~~~~~----------~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~ 313 (330)
T PRK11028 252 ISVFSVSEDGSVL------SFEGHQPTE----------TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTEL 313 (330)
T ss_pred EEEEEEeCCCCeE------EEeEEEecc----------ccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEc
Confidence 7777775533210 011111110 0223678999999998876656778899998878876655
|
|
| >PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.8e-10 Score=115.02 Aligned_cols=200 Identities=21% Similarity=0.249 Sum_probs=121.3
Q ss_pred HHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcC---CC-CCCcEEEEEecchHHHHHHH
Q 003363 613 SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG---LA-NPSKVTVVGGSHGGFLTTHL 688 (826)
Q Consensus 613 ~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~---~~-d~~rv~l~G~S~GG~~a~~~ 688 (826)
.+..+.++||+|+++||.|-+ ..+. .+......++++++...+.. .+ ...+|+++|+|.||+.++++
T Consensus 18 ~l~~~L~~GyaVv~pDY~Glg---~~y~------~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~A 88 (290)
T PF03583_consen 18 FLAAWLARGYAVVAPDYEGLG---TPYL------NGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWA 88 (290)
T ss_pred HHHHHHHCCCEEEecCCCCCC---Cccc------CcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHH
Confidence 556677999999999999843 3321 22223344444444444322 12 34689999999999999887
Q ss_pred HHh----CCCc---eeEEEecCCccchhhhccCCCCCCch-h------------------hhhc----cC----------
Q 003363 689 IGQ----APDK---FVAAAARNPLCNLALMVGTTDIPDWC-Y------------------VESY----GS---------- 728 (826)
Q Consensus 689 a~~----~p~~---~~a~v~~~p~~~~~~~~~~~~~~~~~-~------------------~~~~----~~---------- 728 (826)
+.. .||+ +.++++.+|..|+..+....+...+. + ...+ +.
T Consensus 89 A~l~~~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c 168 (290)
T PF03583_consen 89 AELAPSYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRC 168 (290)
T ss_pred HHHhHHhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 743 3554 78899999988875544332221110 0 0000 00
Q ss_pred --------cCCcc-------CCCCCC----hhhHHHHhhcCc-ccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhC
Q 003363 729 --------KGKDS-------FTESPS----VEDLTRFHSKSP-ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 788 (826)
Q Consensus 729 --------~~~~~-------~~~~~~----~~~~~~~~~~sp-~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~ 788 (826)
..... +..... ......+.+.+. ...-...+.|++|.||..|.+||+....+++++++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~ 248 (290)
T PF03583_consen 169 LADIVAEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWTPTVPVLIYQGTADEVVPPADTDALVAKWCAA 248 (290)
T ss_pred HHHHHHHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCChHHHHHHHHHHHHc
Confidence 00000 000000 000111111111 0011233689999999999999999999999999999
Q ss_pred C-CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 789 G-VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 789 g-~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
| .+++++.+++.+|..... ......+.||...+
T Consensus 249 G~a~V~~~~~~~~~H~~~~~----~~~~~a~~Wl~~rf 282 (290)
T PF03583_consen 249 GGADVEYVRYPGGGHLGAAF----ASAPDALAWLDDRF 282 (290)
T ss_pred CCCCEEEEecCCCChhhhhh----cCcHHHHHHHHHHH
Confidence 9 799999999999975422 23367788888765
|
Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process |
| >PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-09 Score=103.97 Aligned_cols=183 Identities=16% Similarity=0.166 Sum_probs=105.8
Q ss_pred EEEEEcCCCCCCCCccchHHHHHHHHCCcE--EEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYS--LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~--Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.|+|+||-..+..+.......+++++.+.. +..+|++- ...+..+.++.+++.. .++
T Consensus 1 ~ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~-------------------~p~~a~~~l~~~i~~~--~~~ 59 (187)
T PF05728_consen 1 MILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLPP-------------------FPEEAIAQLEQLIEEL--KPE 59 (187)
T ss_pred CeEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCCc-------------------CHHHHHHHHHHHHHhC--CCC
Confidence 389999965543333444566677777644 44444432 2445556666666652 344
Q ss_pred cEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCc
Q 003363 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP 751 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 751 (826)
.+.|+|.|+||+.|.+++.+++ +++ |+++|.+........ ..|... ..+.+....-....+.+...
T Consensus 60 ~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~----------~iG~~~-~~~~~e~~~~~~~~~~~l~~ 125 (187)
T PF05728_consen 60 NVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQD----------YIGEQT-NPYTGESYELTEEHIEELKA 125 (187)
T ss_pred CeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHH----------hhCccc-cCCCCccceechHhhhhcce
Confidence 5999999999999999998874 444 888998765332111 111100 00100000001111111111
Q ss_pred cccc-CCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 003363 752 ISHI-SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 752 ~~~~-~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~ 821 (826)
+... ..-..++++++++.|+++++..+...++. ...++.+|++|.+... .+....|++|+
T Consensus 126 l~~~~~~~~~~~lvll~~~DEvLd~~~a~~~~~~-------~~~~i~~ggdH~f~~f---~~~l~~i~~f~ 186 (187)
T PF05728_consen 126 LEVPYPTNPERYLVLLQTGDEVLDYREAVAKYRG-------CAQIIEEGGDHSFQDF---EEYLPQIIAFL 186 (187)
T ss_pred EeccccCCCccEEEEEecCCcccCHHHHHHHhcC-------ceEEEEeCCCCCCccH---HHHHHHHHHhh
Confidence 1111 12236899999999999999776555443 3445678889998743 35667788776
|
One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised. |
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.4e-09 Score=103.59 Aligned_cols=285 Identities=14% Similarity=0.140 Sum_probs=181.6
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
+.+....|+|||..+|.. +..+.+.+|. .+..+..- ...+..|.| .++.|++|+..|+..+.+++..
T Consensus 48 geI~~~~F~P~gs~~aSg-----G~Dr~I~LWnv~gdceN~~-~lkgHsgAV------M~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 48 GEIYTIKFHPDGSCFASG-----GSDRAIVLWNVYGDCENFW-VLKGHSGAV------MELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred ceEEEEEECCCCCeEeec-----CCcceEEEEecccccccee-eecccccee------EeeeeccCCCEEEEecCCceEE
Confidence 458889999999999863 5556778884 44333322 234666777 9999999999999988877654
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccC--CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY--AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~--~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
.|+...++.....+.+....+... ..+-|.++ ++..+.++.+||....+...+ .........+.|..++.+
T Consensus 116 --~wD~~tG~~~rk~k~h~~~vNs~~-p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t--~~~kyqltAv~f~d~s~q-- 188 (338)
T KOG0265|consen 116 --GWDAETGKRIRKHKGHTSFVNSLD-PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT--FENKYQLTAVGFKDTSDQ-- 188 (338)
T ss_pred --EEecccceeeehhccccceeeecC-ccccCCeEEEecCCCceEEEEeecccchhhc--cccceeEEEEEecccccc--
Confidence 566555666666665555554333 22223332 233467899999987776655 556678889999999998
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEe
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 390 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s 390 (826)
+...+ -+++|-.+|+. .......|..+...+.....||+|.+|.-.+
T Consensus 189 --v~sgg---------------Idn~ikvWd~r----------------~~d~~~~lsGh~DtIt~lsls~~gs~llsns 235 (338)
T KOG0265|consen 189 --VISGG---------------IDNDIKVWDLR----------------KNDGLYTLSGHADTITGLSLSRYGSFLLSNS 235 (338)
T ss_pred --eeecc---------------ccCceeeeccc----------------cCcceEEeecccCceeeEEeccCCCcccccc
Confidence 66555 22367778872 2333556777777889999999999988666
Q ss_pred ccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEE
Q 003363 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470 (826)
Q Consensus 391 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l 470 (826)
++ +.+.+||...-... . ..+.+..... - .++-++...+|||+++.+-+. ..+..+
T Consensus 236 Md-----------~tvrvwd~rp~~p~-----~-R~v~if~g~~-h----nfeknlL~cswsp~~~~i~ag---s~dr~v 290 (338)
T KOG0265|consen 236 MD-----------NTVRVWDVRPFAPS-----Q-RCVKIFQGHI-H----NFEKNLLKCSWSPNGTKITAG---SADRFV 290 (338)
T ss_pred cc-----------ceEEEEEecccCCC-----C-ceEEEeecch-h----hhhhhcceeeccCCCCccccc---cccceE
Confidence 65 45777876442111 0 0111111100 0 133456678899999866554 346678
Q ss_pred EEEECCCCcEEEecC-CCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEe
Q 003363 471 ISVNVSSGELLRITP-AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 519 (826)
Q Consensus 471 ~~vdl~tg~~~~lt~-~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~ 519 (826)
|.+|..+..+....+ ..+.+....|.|....|+ .+++..+ ||++.
T Consensus 291 yvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iil-s~~sdk~---i~lge 336 (338)
T KOG0265|consen 291 YVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIIL-SCSSDKT---IYLGE 336 (338)
T ss_pred EEeecccccEEEEcCCcceeEEEeeecCCCcEEE-EeccCce---eEeec
Confidence 999986645444344 444666667888776444 4433333 66654
|
|
| >PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.3e-11 Score=125.80 Aligned_cols=204 Identities=17% Similarity=0.182 Sum_probs=120.7
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCC-CCCCCCccchHHHHHHHHCC----cEEEEECCCCCCCCchhhh------h
Q 003363 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGG-PHSVSLSSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEAL------Q 641 (826)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg-~~~~~~~~~~~~~~~la~~G----~~Vl~~d~rG~~g~G~~~~------~ 641 (826)
|.+...++|.|++++..+++|+|+++||. .... .......+..+.+.| .++++++..+.......+. .
T Consensus 5 g~~~~~~VylP~~y~~~~~~PvlylldG~~~~~~-~~~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~~~~~~ 83 (251)
T PF00756_consen 5 GRDRRVWVYLPPGYDPSKPYPVLYLLDGQSGWFR-NGNAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLPAGSSR 83 (251)
T ss_dssp TEEEEEEEEECTTGGTTTTEEEEEEESHTTHHHH-HHHHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSSBCTTC
T ss_pred CCeEEEEEEECCCCCCCCCCEEEEEccCCccccc-cchHHHHHHHHHHhCCCCceEEEEEeccccccccccccccccccc
Confidence 56678899999998888999999999995 1110 001112333344443 4566666544331111111 0
Q ss_pred cCCCCCCcchHHHH--HHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchh-hhccCCCCC
Q 003363 642 SLPGKVGSQDVNDV--LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-LMVGTTDIP 718 (826)
Q Consensus 642 ~~~~~~~~~~~~D~--~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~-~~~~~~~~~ 718 (826)
......+.....+. .+.+.++.++..+++++.+|+|+||||+.|+.++.++|+.|.++++.+|.++.. .+....+..
T Consensus 84 ~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~~~~w~~~~~~ 163 (251)
T PF00756_consen 84 RADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPSPSLWGPSDDE 163 (251)
T ss_dssp BCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETTHCHHHHSTCG
T ss_pred ccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCccccccccccCcCCcH
Confidence 01111111122332 255667777766776669999999999999999999999999999999987653 111110000
Q ss_pred CchhhhhccCcCCccCCCCCChhhHHHHhhcCccc-----ccCCCCCcEEEEEeCCCCCCC----------cHHHHHHHH
Q 003363 719 DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS-----HISKVKTPTIFLLGAQDLRVP----------VSNGLQYAR 783 (826)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-----~~~~i~~PvLii~G~~D~~vp----------~~~~~~~~~ 783 (826)
.+...++.. ....-..++++..|+.|.... .....++.+
T Consensus 164 --------------------------~~~~~~~~~~~~~~~~~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~~ 217 (251)
T PF00756_consen 164 --------------------------AWKENDPFDLIKALSQKKKPLRIYLDVGTKDEFGGWEDSAQILQFLANNRELAQ 217 (251)
T ss_dssp --------------------------HHGGCHHHHHHHHHHHTTSEEEEEEEEETTSTTHHCSHHHHHHHHHHHHHHHHH
T ss_pred --------------------------HhhhccHHHHhhhhhcccCCCeEEEEeCCCCcccccccCHHHHHHHHHhHhhHH
Confidence 011111111 112334689999999998432 123344455
Q ss_pred HHHhCCCCEEEEEeCCCCCCC
Q 003363 784 ALREKGVETKVIVFPNDVHGI 804 (826)
Q Consensus 784 ~l~~~g~~~~~~~~p~~~H~~ 804 (826)
.|+..|.+..+..++| +|..
T Consensus 218 ~l~~~g~~~~~~~~~G-~H~~ 237 (251)
T PF00756_consen 218 LLKAKGIPHTYHVFPG-GHDW 237 (251)
T ss_dssp HCCCEECTTESEEEHS-ESSH
T ss_pred HHHHcCCCceEEEecC-ccch
Confidence 5666678888889984 6754
|
; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D .... |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-08 Score=108.89 Aligned_cols=269 Identities=14% Similarity=0.215 Sum_probs=146.5
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003363 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (826)
Q Consensus 105 s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (826)
+|+++.+ |...... .....+..+.++...+....+...+ +........+.+|||++|+.... .++.-.++.+
T Consensus 45 ~~~~~~L-Y~~~e~~----~~~g~v~~~~i~~~~g~L~~~~~~~--~~g~~p~~i~~~~~g~~l~vany-~~g~v~v~~l 116 (345)
T PF10282_consen 45 SPDGRRL-YVVNEGS----GDSGGVSSYRIDPDTGTLTLLNSVP--SGGSSPCHIAVDPDGRFLYVANY-GGGSVSVFPL 116 (345)
T ss_dssp -TTSSEE-EEEETTS----STTTEEEEEEEETTTTEEEEEEEEE--ESSSCEEEEEECTTSSEEEEEET-TTTEEEEEEE
T ss_pred EeCCCEE-EEEEccc----cCCCCEEEEEECCCcceeEEeeeec--cCCCCcEEEEEecCCCEEEEEEc-cCCeEEEEEc
Confidence 6787766 6554432 1244666666655534333332111 11134567899999999866544 3355556666
Q ss_pred ecCCceeEEEecCCC-cccccc---CCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceee
Q 003363 185 WSQSQLEKEFHVPQT-VHGSVY---ADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (826)
Q Consensus 185 ~~~~~~~~~~~~~~~-~~g~v~---~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (826)
...+........... -+|..- ...--..+.++|||++|+. .+.
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v-~dl-------------------------------- 163 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV-PDL-------------------------------- 163 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE-EET--------------------------------
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE-Eec--------------------------------
Confidence 655655554321100 000000 0001147889999998854 332
Q ss_pred cCCCccCCCccCceEEEEEccCCc--eEecc--CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCc
Q 003363 261 EDWGETYAGKRQPSLFVININSGE--VQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 336 (826)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~--~~~l~--~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~ 336 (826)
+...|++++++.+. +.... ..+......+++|+|||+. +|+..+.. +.
T Consensus 164 ----------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~-----~Yv~~e~s-------------~~ 215 (345)
T PF10282_consen 164 ----------GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKY-----AYVVNELS-------------NT 215 (345)
T ss_dssp ----------TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSE-----EEEEETTT-------------TE
T ss_pred ----------CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCE-----EEEecCCC-------------Cc
Confidence 22567777765543 43311 1355557789999999995 45553322 35
Q ss_pred eEEEEcccccchhhhhhhhcCCCCCCccee------cCC---CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEE
Q 003363 337 LYAVRVSLYKSEASELELKESSSEDLPVVN------LTE---SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLH 407 (826)
Q Consensus 337 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~------Lt~---~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~ 407 (826)
|..++++. ..+..+. +.. ........++||||++| |.+++. .+.|.
T Consensus 216 v~v~~~~~---------------~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~l-yvsnr~---------~~sI~ 270 (345)
T PF10282_consen 216 VSVFDYDP---------------SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFL-YVSNRG---------SNSIS 270 (345)
T ss_dssp EEEEEEET---------------TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEE-EEEECT---------TTEEE
T ss_pred EEEEeecc---------------cCCceeEEEEeeeccccccccCCceeEEEecCCCEE-EEEecc---------CCEEE
Confidence 66666521 1222211 111 11145667899999975 677764 35677
Q ss_pred EEeCCC--CCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003363 408 RIDWPT--NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (826)
Q Consensus 408 ~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt 484 (826)
+++++. +... .+..+.+ .+.+ ...+.++|||++|+++...++...+|.+|.++|.++.+.
T Consensus 271 vf~~d~~~g~l~--------~~~~~~~--~G~~-------Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 271 VFDLDPATGTLT--------LVQTVPT--GGKF-------PRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEECTTTTTEE--------EEEEEEE--SSSS-------EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEecCCCceE--------EEEEEeC--CCCC-------ccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 777743 2221 1121211 1111 346788999999988877778899999999999988764
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.7e-08 Score=104.85 Aligned_cols=255 Identities=14% Similarity=0.072 Sum_probs=132.9
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEec--CCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV--PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
.....++||||++|+...... +.-..|.+..++....+... .... ..+.++|||+.|+.....
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~-~~i~~~~~~~~g~l~~~~~~~~~~~p----------~~i~~~~~g~~l~v~~~~---- 100 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPE-FRVLSYRIADDGALTFAAESPLPGSP----------THISTDHQGRFLFSASYN---- 100 (330)
T ss_pred CCccEEECCCCCEEEEEECCC-CcEEEEEECCCCceEEeeeecCCCCc----------eEEEECCCCCEEEEEEcC----
Confidence 456779999999886654422 33333445433433322221 1122 578999999977665321
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccC-CceE-eccCCCCCCccceEEEeeCCCCCc
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS-GEVQ-AVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~-g~~~-~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
...|.+++++. |.+. .+...+....+..++++|||+.
T Consensus 101 ---------------------------------------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~-- 139 (330)
T PRK11028 101 ---------------------------------------ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRT-- 139 (330)
T ss_pred ---------------------------------------CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCE--
Confidence 25678888753 3221 1110222234556789999996
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcce-------ecCCCCccccCceecCCC
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-------NLTESISSAFFPRFSPDG 383 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~Lt~~~~~~~~p~~SpDG 383 (826)
|+... . ....|+++|+. ..+... ++.. ........|+|||
T Consensus 140 --l~v~~-~-------------~~~~v~v~d~~----------------~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg 186 (330)
T PRK11028 140 --LWVPC-L-------------KEDRIRLFTLS----------------DDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQ 186 (330)
T ss_pred --EEEee-C-------------CCCEEEEEEEC----------------CCCcccccCCCceecCC-CCCCceEEECCCC
Confidence 65443 2 22368888873 112221 1111 2235567999999
Q ss_pred CEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEE
Q 003363 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 463 (826)
Q Consensus 384 ~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~ 463 (826)
++|+... .. ...|.+++++.+... + ..+..+...+.+ +.+ ......+.++|||+++|.+..
T Consensus 187 ~~lyv~~-~~---------~~~v~v~~~~~~~~~-~----~~~~~~~~~p~~--~~~--~~~~~~i~~~pdg~~lyv~~~ 247 (330)
T PRK11028 187 QYAYCVN-EL---------NSSVDVWQLKDPHGE-I----ECVQTLDMMPAD--FSD--TRWAADIHITPDGRHLYACDR 247 (330)
T ss_pred CEEEEEe-cC---------CCEEEEEEEeCCCCC-E----EEEEEEecCCCc--CCC--CccceeEEECCCCCEEEEecC
Confidence 9865443 32 256888887642110 0 001111111111 111 001124668999998877643
Q ss_pred eCCeEEEEEEECCCCcEEEecC--CCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEee
Q 003363 464 WGSSQVIISVNVSSGELLRITP--AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 520 (826)
Q Consensus 464 ~~~~~~l~~vdl~tg~~~~lt~--~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 520 (826)
..+...+|.++.+++..+.+.. .........+++||+.++....... .|.+.++
T Consensus 248 ~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~---~v~v~~~ 303 (330)
T PRK11028 248 TASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSH---HISVYEI 303 (330)
T ss_pred CCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCC---cEEEEEE
Confidence 3455667777665554332221 1111223478899998887654332 3555544
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.7e-10 Score=135.61 Aligned_cols=234 Identities=15% Similarity=0.189 Sum_probs=134.6
Q ss_pred EEEEEEecCCCCC--CCCCcEEEEEcCCCCCCCCccchH-----HHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 576 FEAIFVSSSHKKD--CSCDPLIVVLHGGPHSVSLSSYSK-----SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 576 l~~~~~~P~~~~~--~~~~P~vv~~HGg~~~~~~~~~~~-----~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
++.+.|.|..... ....|.||++||.+... ..|.. ....|.++||.|+++|+.. + +... ......
T Consensus 49 ~~l~~y~~~~~~~~~~~~~~plllvhg~~~~~--~~~d~~~~~s~v~~L~~~g~~v~~~d~G~-~--~~~~---~~~~~~ 120 (994)
T PRK07868 49 YRLRRYFPPDNRPGQPPVGPPVLMVHPMMMSA--DMWDVTRDDGAVGILHRAGLDPWVIDFGS-P--DKVE---GGMERN 120 (994)
T ss_pred EEEEEeCCCCccccccCCCCcEEEECCCCCCc--cceecCCcccHHHHHHHCCCEEEEEcCCC-C--ChhH---cCccCC
Confidence 5556777753211 23457899999976553 33432 3788999999999999632 1 1110 000000
Q ss_pred -cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhC-CCceeEEEecCCccchhhh---------------
Q 003363 649 -SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALM--------------- 711 (826)
Q Consensus 649 -~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~p~~~~~~~--------------- 711 (826)
...+.++.++++.+.+.. .+++.++|||+||.+++.+++.+ +++++.+|+.+...|+...
T Consensus 121 l~~~i~~l~~~l~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~~~~~~~~~~ 197 (994)
T PRK07868 121 LADHVVALSEAIDTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIPAGLAAAAAD 197 (994)
T ss_pred HHHHHHHHHHHHHHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccchhhhhhcccc
Confidence 011233444555444442 25799999999999998887744 5689988876655443110
Q ss_pred ------ccCCCCCCchhhhh-------------------ccC-cCC------ccC---C---CCCC---hhhHHHHhhcC
Q 003363 712 ------VGTTDIPDWCYVES-------------------YGS-KGK------DSF---T---ESPS---VEDLTRFHSKS 750 (826)
Q Consensus 712 ------~~~~~~~~~~~~~~-------------------~~~-~~~------~~~---~---~~~~---~~~~~~~~~~s 750 (826)
.....++.|..... +.. ... ..+ . ..+. .+....+...+
T Consensus 198 ~~~~~~~~~~~~p~~~~~~~~~~l~p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~~~g~~~~~~~~~~~~~n 277 (994)
T PRK07868 198 FMADHVFNRLDIPGWMARTGFQMLDPVKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIAWSGPAISELLKQFIAHN 277 (994)
T ss_pred cchhhhhhcCCCCHHHHHHHHHhcChhHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccccchHHHHHHHHHHHHhC
Confidence 00011122210000 000 000 000 0 0000 01111222111
Q ss_pred cc-----------cccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEE-EEeCCCCCCC--CCCCCHHHHHHH
Q 003363 751 PI-----------SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV-IVFPNDVHGI--ERPQSDFESFLN 816 (826)
Q Consensus 751 p~-----------~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~-~~~p~~~H~~--~~~~~~~~~~~~ 816 (826)
.. ..+.++++|+|+++|++|.++|+..+..+.+.+.. .++ .+++++||.. .......+.+..
T Consensus 278 ~~~~g~~~~~~~~~~L~~i~~P~L~i~G~~D~ivp~~~~~~l~~~i~~----a~~~~~~~~~GH~g~~~g~~a~~~~wp~ 353 (994)
T PRK07868 278 RMMTGGFAINGQMVTLADITCPVLAFVGEVDDIGQPASVRGIRRAAPN----AEVYESLIRAGHFGLVVGSRAAQQTWPT 353 (994)
T ss_pred cccCceEEECCEEcchhhCCCCEEEEEeCCCCCCCHHHHHHHHHhCCC----CeEEEEeCCCCCEeeeechhhhhhhChH
Confidence 11 13678999999999999999999999988877654 455 5778999973 345556688999
Q ss_pred HHHHHHHH
Q 003363 817 IGLWFKKY 824 (826)
Q Consensus 817 i~~w~~~~ 824 (826)
+.+|+.++
T Consensus 354 i~~wl~~~ 361 (994)
T PRK07868 354 VADWVKWL 361 (994)
T ss_pred HHHHHHHh
Confidence 99999875
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.7e-08 Score=110.99 Aligned_cols=273 Identities=14% Similarity=0.076 Sum_probs=159.3
Q ss_pred cEEEEeCCCCCeEEEEecCCC-CCCeEEEEe-cCCceeE-EEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEK-EFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~-~~~~~~~i~-~~~~~~~-~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
....++||||++|||..+.++ +...+++++ ..|+... .+..... ..+.|++||+.++|...+....
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~-----------~~~~W~~d~~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF-----------SSVSWSDDGKGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES-----------EEEEECTTSSEEEEEECSTTTS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc-----------ceEEEeCCCCEEEEEEeCcccc
Confidence 346789999999999866543 445566666 4453322 1111111 2499999999999997665321
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceE--ecc-CCCCCCccceEEEeeCCCCC
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ--AVK-GIPKSLSVGQVVWAPLNEGL 309 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~--~l~-~~~~~~~~~~~~wSPDg~~~ 309 (826)
.. .......||.+.+.++... .|- +.......-.+.+|+||+.
T Consensus 195 ~~---------------------------------~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~- 240 (414)
T PF02897_consen 195 TS---------------------------------DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRY- 240 (414)
T ss_dssp S----------------------------------CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSE-
T ss_pred cc---------------------------------cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccE-
Confidence 00 0012468999999877544 332 1222221446789999998
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccc-cCceecCCCCEEEE
Q 003363 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSA-FFPRFSPDGKFLVF 388 (826)
Q Consensus 310 ~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~-~~p~~SpDG~~l~f 388 (826)
|+..+..... .+.+|++|+.... ......+.|....... ..... .|..|++
T Consensus 241 ---l~i~~~~~~~-----------~s~v~~~d~~~~~------------~~~~~~~~l~~~~~~~~~~v~~--~~~~~yi 292 (414)
T PF02897_consen 241 ---LFISSSSGTS-----------ESEVYLLDLDDGG------------SPDAKPKLLSPREDGVEYYVDH--HGDRLYI 292 (414)
T ss_dssp ---EEEEEESSSS-----------EEEEEEEECCCTT------------TSS-SEEEEEESSSS-EEEEEE--ETTEEEE
T ss_pred ---EEEEEEcccc-----------CCeEEEEeccccC------------CCcCCcEEEeCCCCceEEEEEc--cCCEEEE
Confidence 7776633221 2489999983100 0123556665433222 22222 2777888
Q ss_pred EeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeE
Q 003363 389 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 468 (826)
Q Consensus 389 ~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~ 468 (826)
.++.. .....|..+++...... ... .++..+.+. ..--.+...+.+|++....++..
T Consensus 293 ~Tn~~-------a~~~~l~~~~l~~~~~~----~~~---~~l~~~~~~---------~~l~~~~~~~~~Lvl~~~~~~~~ 349 (414)
T PF02897_consen 293 LTNDD-------APNGRLVAVDLADPSPA----EWW---TVLIPEDED---------VSLEDVSLFKDYLVLSYRENGSS 349 (414)
T ss_dssp EE-TT--------TT-EEEEEETTSTSGG----GEE---EEEE--SSS---------EEEEEEEEETTEEEEEEEETTEE
T ss_pred eeCCC-------CCCcEEEEecccccccc----cce---eEEcCCCCc---------eeEEEEEEECCEEEEEEEECCcc
Confidence 88764 24578999998775421 000 011111110 00112344567899998999999
Q ss_pred EEEEEECC-CCcEEEecCCCC-CeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 003363 469 VIISVNVS-SGELLRITPAES-NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 524 (826)
Q Consensus 469 ~l~~vdl~-tg~~~~lt~~~~-~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~ 524 (826)
.|..+++. +.....+..... .+.......+++.+.+..+++.+|+.+|.+++.+++
T Consensus 350 ~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 350 RLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 99999998 666666654433 233334456788999999999999999999987765
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG3101 consensus Esterase D [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.2e-10 Score=105.11 Aligned_cols=212 Identities=15% Similarity=0.171 Sum_probs=128.3
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch---HHHHHHHHCCcEEEEEC--CCCCCCCchh--h--------
Q 003363 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVN--YRGSLGFGEE--A-------- 639 (826)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~---~~~~~la~~G~~Vl~~d--~rG~~g~G~~--~-------- 639 (826)
.+.--+|.|+....+++.|++.++-|-.... ..|. ...+....+|++|+.|| .||..--|.+ |
T Consensus 27 ~Mtf~vylPp~a~~~k~~P~lf~LSGLTCT~--~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GAGF 104 (283)
T KOG3101|consen 27 SMTFGVYLPPDAPRGKRCPVLFYLSGLTCTH--ENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGAGF 104 (283)
T ss_pred ceEEEEecCCCcccCCcCceEEEecCCcccc--hhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCcee
Confidence 4566688888877778899999999855432 2222 23445578999999999 5664322221 1
Q ss_pred -hhcCCCCCCc-chHHH-HHHHHHHHHH--cCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC
Q 003363 640 -LQSLPGKVGS-QDVND-VLTAIDHVID--MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 714 (826)
Q Consensus 640 -~~~~~~~~~~-~~~~D-~~~~i~~l~~--~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~ 714 (826)
.++....|.. ..+.| +..-+-.++. .-.+|+.+++|+||||||+-|+..+.+.|.+++.+.+.+|+++....
T Consensus 105 YvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~~c--- 181 (283)
T KOG3101|consen 105 YVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPINC--- 181 (283)
T ss_pred EEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCcccC---
Confidence 0011111111 11111 1111111222 22388999999999999999999889999999999999999985432
Q ss_pred CCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCccc---ccCCCCCcEEEEEeCCCCCCCcHHH--HHHHHHHHhC-
Q 003363 715 TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS---HISKVKTPTIFLLGAQDLRVPVSNG--LQYARALREK- 788 (826)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~---~~~~i~~PvLii~G~~D~~vp~~~~--~~~~~~l~~~- 788 (826)
.| |......|.+. +...|...++.. ..+....-+||-.|+.|.+.+ +|. +.+.++.+..
T Consensus 182 ----pW------GqKAf~gYLG~----~ka~W~~yDat~lik~y~~~~~~ilIdqG~~D~Fl~-~qLlPe~l~~a~~~~~ 246 (283)
T KOG3101|consen 182 ----PW------GQKAFTGYLGD----NKAQWEAYDATHLIKNYRGVGDDILIDQGAADNFLA-EQLLPENLLEACKATW 246 (283)
T ss_pred ----cc------hHHHhhcccCC----ChHHHhhcchHHHHHhcCCCCccEEEecCccchhhh-hhcChHHHHHHhhccc
Confidence 23 22112222222 233444444443 344445569999999999876 221 2344444422
Q ss_pred CCCEEEEEeCCCCCCCCC
Q 003363 789 GVETKVIVFPNDVHGIER 806 (826)
Q Consensus 789 g~~~~~~~~p~~~H~~~~ 806 (826)
..++.+...+|-+|....
T Consensus 247 ~~~v~~r~~~gyDHSYyf 264 (283)
T KOG3101|consen 247 QAPVVFRLQEGYDHSYYF 264 (283)
T ss_pred cccEEEEeecCCCcceee
Confidence 357888889999998653
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-09 Score=109.79 Aligned_cols=268 Identities=12% Similarity=0.054 Sum_probs=168.5
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCC--CCeEEEEeecCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPS 230 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPD--g~~ia~~~~~~~ 230 (826)
.++...+|+||+.||..+-.+ ...+| .+.+..+.+. +..+.+ .++.|+|. +..||..+.+++
T Consensus 177 Pis~~~fS~ds~~laT~swsG-----~~kvW~~~~~~~~~~l~---gH~~~v------~~~~fhP~~~~~~lat~s~Dgt 242 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSG-----LVKVWSVPQCNLLQTLR---GHTSRV------GAAVFHPVDSDLNLATASADGT 242 (459)
T ss_pred cceeeEeecCCCeEEEeecCC-----ceeEeecCCcceeEEEe---ccccce------eeEEEccCCCccceeeeccCCc
Confidence 478889999999999876543 45555 2233333332 222223 79999998 678999998887
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003363 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
.+.+.++. .........+..-+..+.|.|++.-..+..-+..=-+||+.++..-.+. ...+-++.+.+|.|||.
T Consensus 243 vklw~~~~--e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q-EGHs~~v~~iaf~~DGS--- 316 (459)
T KOG0272|consen 243 VKLWKLSQ--ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ-EGHSKGVFSIAFQPDGS--- 316 (459)
T ss_pred eeeeccCC--CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh-cccccccceeEecCCCc---
Confidence 76443332 1222233345555567778888544444444555667899888654442 23344788999999999
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEe
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 390 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s 390 (826)
|+.++- .++-=.++|+. .+..+..|..+...+....|||.|-.|+..+
T Consensus 317 --L~~tGG--------------lD~~~RvWDlR----------------tgr~im~L~gH~k~I~~V~fsPNGy~lATgs 364 (459)
T KOG0272|consen 317 --LAATGG--------------LDSLGRVWDLR----------------TGRCIMFLAGHIKEILSVAFSPNGYHLATGS 364 (459)
T ss_pred --eeeccC--------------ccchhheeecc----------------cCcEEEEecccccceeeEeECCCceEEeecC
Confidence 554441 11122245662 3444567777888899999999999998766
Q ss_pred ccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEE
Q 003363 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470 (826)
Q Consensus 391 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l 470 (826)
.+ +...+||+.......+.....+ -+..+.|+|++..++++++.++..+|
T Consensus 365 ~D-----------nt~kVWDLR~r~~ly~ipAH~n-------------------lVS~Vk~~p~~g~fL~TasyD~t~ki 414 (459)
T KOG0272|consen 365 SD-----------NTCKVWDLRMRSELYTIPAHSN-------------------LVSQVKYSPQEGYFLVTASYDNTVKI 414 (459)
T ss_pred CC-----------CcEEEeeecccccceecccccc-------------------hhhheEecccCCeEEEEcccCcceee
Confidence 55 4567788766444322222222 34577899977778888888888888
Q ss_pred EEEECCCCc-EEEecCCCCCeeeEEEeecCCEEEEEE
Q 003363 471 ISVNVSSGE-LLRITPAESNFSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 471 ~~vdl~tg~-~~~lt~~~~~~~~~~~s~dg~~l~~~~ 506 (826)
|.-. +.. ++.|....+.+....+++|+..++..+
T Consensus 415 Ws~~--~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 415 WSTR--TWSPLKSLAGHEGKVISLDISPDSQAIATSS 449 (459)
T ss_pred ecCC--CcccchhhcCCccceEEEEeccCCceEEEec
Confidence 8632 333 444444455555567788887665544
|
|
| >PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.8e-10 Score=112.50 Aligned_cols=224 Identities=15% Similarity=0.190 Sum_probs=87.2
Q ss_pred CCcEEEEEcCCCCCCCC-ccchHHHHHHHHCCcEEEEECCCCC-CCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcC--
Q 003363 591 CDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNYRGS-LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG-- 666 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~-~~~~~~~~~la~~G~~Vl~~d~rG~-~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~-- 666 (826)
...+||||-|-..+... ......++.|...||.|+.+.++-+ .|+|.... ..+++|+.++|+||+...
T Consensus 32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL--------~~D~~eI~~~v~ylr~~~~g 103 (303)
T PF08538_consen 32 APNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSL--------DRDVEEIAQLVEYLRSEKGG 103 (303)
T ss_dssp SSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--H--------HHHHHHHHHHHHHHHHHS--
T ss_pred CCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcchh--------hhHHHHHHHHHHHHHHhhcc
Confidence 45689999883333323 3344567777778999999998863 45654432 347999999999999973
Q ss_pred CCCCCcEEEEEecchHHHHHHHHHhCC-----CceeEEEecCCccchhhhccCCCC-CCch----hhhhc---cC--c--
Q 003363 667 LANPSKVTVVGGSHGGFLTTHLIGQAP-----DKFVAAAARNPLCNLALMVGTTDI-PDWC----YVESY---GS--K-- 729 (826)
Q Consensus 667 ~~d~~rv~l~G~S~GG~~a~~~a~~~p-----~~~~a~v~~~p~~~~~~~~~~~~~-~~~~----~~~~~---~~--~-- 729 (826)
....++|+|+|||-|..-+++++.+.. ..+.++|+.+|+.|...+...... .... ..... +. .
T Consensus 104 ~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~~l 183 (303)
T PF08538_consen 104 HFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDEIL 183 (303)
T ss_dssp ----S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-GG
T ss_pred ccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCcee
Confidence 135689999999999999999987642 579999999999986544322111 0000 00000 00 0
Q ss_pred ---CCccCC-CCCCh----------hhHHHHhhc----C-cccccCCCCCcEEEEEeCCCCCCCcHH-HHHHHHHHHhCC
Q 003363 730 ---GKDSFT-ESPSV----------EDLTRFHSK----S-PISHISKVKTPTIFLLGAQDLRVPVSN-GLQYARALREKG 789 (826)
Q Consensus 730 ---~~~~~~-~~~~~----------~~~~~~~~~----s-p~~~~~~i~~PvLii~G~~D~~vp~~~-~~~~~~~l~~~g 789 (826)
....+. ..|-. ...+.+... . -...+.++..|+|++.+++|+.||... -.++.++++..-
T Consensus 184 p~~~~~~~~~~~PiTA~Rf~SL~s~~gdDD~FSSDL~de~l~~tfG~v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~a~ 263 (303)
T PF08538_consen 184 PREFTPLVFYDTPITAYRFLSLASPGGDDDYFSSDLSDERLKKTFGKVSKPLLVLYSGKDEYVPPWVDKEALLERWKAAT 263 (303)
T ss_dssp ----GGTTT-SS---HHHHHT-S-SSHHHHTHHHHHTT-HHHHTGGG--S-EEEEEE--TT-------------------
T ss_pred eccccccccCCCcccHHHHHhccCCCCcccccCCCCCHHHHHHHhccCCCceEEEecCCCceeccccccccccccccccc
Confidence 000000 11110 000111100 0 113466788899999999999998744 345666665542
Q ss_pred C----CEEEEEeCCCCCCCCCCCCH---HHHHHHHHHHHH
Q 003363 790 V----ETKVIVFPNDVHGIERPQSD---FESFLNIGLWFK 822 (826)
Q Consensus 790 ~----~~~~~~~p~~~H~~~~~~~~---~~~~~~i~~w~~ 822 (826)
. ...--++||++|.+..+... ....+++..||+
T Consensus 264 ~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl~ 303 (303)
T PF08538_consen 264 NPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFLK 303 (303)
T ss_dssp ----------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccCC
Confidence 2 22345899999998765443 245666666663
|
This family contains many hypothetical proteins. ; PDB: 2Q0X_B. |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-08 Score=106.71 Aligned_cols=266 Identities=17% Similarity=0.201 Sum_probs=151.7
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
..+....|+|+|+.|++....+ .+.+| ..+........... . ...+.|+|+++.|+..+.+...
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g-----~i~i~~~~~~~~~~~~~~~~~---~------i~~~~~~~~~~~l~~~~~~~~i 75 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDG-----TIKVWDLETGELLRTLKGHTG---P------VRDVAASADGTYLASGSSDKTI 75 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCc-----EEEEEEeeCCCcEEEEecCCc---c------eeEEEECCCCCEEEEEcCCCeE
Confidence 4588999999999999876432 34444 22222222221111 1 1588999999989888765533
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCcc-CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKR-QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~-~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
. .|+............+........|.++ +..+.... ...|.+||+.+++..... ......+..+.|+|+++.
T Consensus 76 ~--i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~-- 149 (289)
T cd00200 76 R--LWDLETGECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSVAFSPDGTF-- 149 (289)
T ss_pred E--EEEcCcccceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEe-ccCCCcEEEEEEcCcCCE--
Confidence 2 2222111111112222223344556666 44443333 789999999866654431 223345778999999764
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCC-cceecCCCCccccCceecCCCCEEEEE
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFL 389 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~Lt~~~~~~~~p~~SpDG~~l~f~ 389 (826)
|+... .+..|+.+|+ ..+ ....+..+...+....|+|+|+.|++.
T Consensus 150 --l~~~~---------------~~~~i~i~d~-----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 195 (289)
T cd00200 150 --VASSS---------------QDGTIKLWDL-----------------RTGKCVATLTGHTGEVNSVAFSPDGEKLLSS 195 (289)
T ss_pred --EEEEc---------------CCCcEEEEEc-----------------cccccceeEecCccccceEEECCCcCEEEEe
Confidence 44333 2236888887 333 334444455567889999999988877
Q ss_pred eccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEE
Q 003363 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (826)
Q Consensus 390 s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (826)
+.+ ..|.+||+.++......... ...+..+.|++++. +++....++ .
T Consensus 196 ~~~-----------~~i~i~d~~~~~~~~~~~~~-------------------~~~i~~~~~~~~~~-~~~~~~~~~--~ 242 (289)
T cd00200 196 SSD-----------GTIKLWDLSTGKCLGTLRGH-------------------ENGVNSVAFSPDGY-LLASGSEDG--T 242 (289)
T ss_pred cCC-----------CcEEEEECCCCceecchhhc-------------------CCceEEEEEcCCCc-EEEEEcCCC--c
Confidence 753 35888998764432211111 01234678999965 444443333 4
Q ss_pred EEEEECCCCcEEEe-cCCCCCeeeEEEeecCCEEEEEE
Q 003363 470 IISVNVSSGELLRI-TPAESNFSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 470 l~~vdl~tg~~~~l-t~~~~~~~~~~~s~dg~~l~~~~ 506 (826)
++.+|+.+++.... ......+....++++++.++...
T Consensus 243 i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (289)
T cd00200 243 IRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGS 280 (289)
T ss_pred EEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEec
Confidence 56667666554443 32333445556777766555443
|
|
| >PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.9e-11 Score=122.09 Aligned_cols=174 Identities=16% Similarity=0.228 Sum_probs=108.0
Q ss_pred cEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEe
Q 003363 622 YSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA 701 (826)
Q Consensus 622 ~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 701 (826)
|.|+++|.||.+..... ..........+|+.+.++.+++.- ..+++.++||||||.+++.++.++|++++++|+
T Consensus 1 f~vi~~d~rG~g~S~~~----~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPH----WDPDFPDYTTDDLAADLEALREAL--GIKKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTTSSSC----CGSGSCTHCHHHHHHHHHHHHHHH--TTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCCCCCC----ccCCcccccHHHHHHHHHHHHHHh--CCCCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 68999999995543210 002233446889999999999873 345699999999999999999999999999999
Q ss_pred cCCcc--c-hh--hhccC----CCCC----C------------ch----hhhhc-cCcCC-----ccCCCC--CChh---
Q 003363 702 RNPLC--N-LA--LMVGT----TDIP----D------------WC----YVESY-GSKGK-----DSFTES--PSVE--- 741 (826)
Q Consensus 702 ~~p~~--~-~~--~~~~~----~~~~----~------------~~----~~~~~-~~~~~-----~~~~~~--~~~~--- 741 (826)
.++.. . .. ..... .... . +. ..... ..... ..+... ....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (230)
T PF00561_consen 75 ISPPPDLPDGLWNRIWPRGNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARFAETDAFDNM 154 (230)
T ss_dssp ESESSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHH
T ss_pred EeeeccchhhhhHHHHhhhhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccchhhhhHHHHHHHHhhh
Confidence 99851 0 00 00000 0000 0 00 00000 00000 000000 0000
Q ss_pred ---hHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCC
Q 003363 742 ---DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 805 (826)
Q Consensus 742 ---~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 805 (826)
....+...++...+.++++|+|+++|++|..+|+.....+.+.+.+ .++++++++||...
T Consensus 155 ~~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p~~~~~~~~~~~~~----~~~~~~~~~GH~~~ 217 (230)
T PF00561_consen 155 FWNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVPPESSEQLAKLIPN----SQLVLIEGSGHFAF 217 (230)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSHHHHHHHHHHHSTT----EEEEEETTCCSTHH
T ss_pred ccccccccccccccccccccCCCeEEEEeCCCCCCCHHHHHHHHHhcCC----CEEEECCCCChHHH
Confidence 0011122233455678999999999999999999998887666655 89999999999764
|
; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A .... |
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-08 Score=98.18 Aligned_cols=263 Identities=14% Similarity=0.156 Sum_probs=163.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecC--CceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ--SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
+-+...-|++|+++|+..+.++ .+.||+. .+....+.++. .|+...++||.|+.||...-+..-
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaSqDG-----klIvWDs~TtnK~haipl~s---------~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSASQDG-----KLIVWDSFTTNKVHAIPLPS---------SWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred cceeeeEecCCcCeEEeeccCC-----eEEEEEcccccceeEEecCc---------eeEEEEEECCCCCeEEecCcCcee
Confidence 4588999999999999887665 6778853 33334444432 256899999999999986543311
Q ss_pred CCCCccCC------CCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEee-
Q 003363 232 SKPTFSLG------STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP- 304 (826)
Q Consensus 232 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSP- 304 (826)
. .+... ..+..+....+..|..--.|.+| +..+++.++....+||+++|+..... ......+-.+..+|
T Consensus 122 s--iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f-~GH~gDV~slsl~p~ 197 (343)
T KOG0286|consen 122 S--IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVF-HGHTGDVMSLSLSPS 197 (343)
T ss_pred E--EEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEe-cCCcccEEEEecCCC
Confidence 0 11111 01112234455666555567766 77888889999999999999876652 22233567889999
Q ss_pred CCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCC
Q 003363 305 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK 384 (826)
Q Consensus 305 Dg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~ 384 (826)
|++. .+..+ | +..-+++|+. ++.-.+....+...+...+|-|+|.
T Consensus 198 ~~nt----FvSg~------------c---D~~aklWD~R----------------~~~c~qtF~ghesDINsv~ffP~G~ 242 (343)
T KOG0286|consen 198 DGNT----FVSGG------------C---DKSAKLWDVR----------------SGQCVQTFEGHESDINSVRFFPSGD 242 (343)
T ss_pred CCCe----EEecc------------c---ccceeeeecc----------------CcceeEeecccccccceEEEccCCC
Confidence 8887 54444 1 1245667762 3334455566677899999999999
Q ss_pred EEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEe
Q 003363 385 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 464 (826)
Q Consensus 385 ~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~ 464 (826)
.++-.+.+ ....++|+..+....+-... .. ..++.++.||..|+.| |...
T Consensus 243 afatGSDD-----------~tcRlyDlRaD~~~a~ys~~------------~~-----~~gitSv~FS~SGRlL-fagy- 292 (343)
T KOG0286|consen 243 AFATGSDD-----------ATCRLYDLRADQELAVYSHD------------SI-----ICGITSVAFSKSGRLL-FAGY- 292 (343)
T ss_pred eeeecCCC-----------ceeEEEeecCCcEEeeeccC------------cc-----cCCceeEEEcccccEE-Eeee-
Confidence 77655543 23566777776543222111 11 1145688999999855 4433
Q ss_pred CCeEEEEEEECCCCcEEEecCC-CCCeeeEEEeecCC
Q 003363 465 GSSQVIISVNVSSGELLRITPA-ESNFSWSLLTLDGD 500 (826)
Q Consensus 465 ~~~~~l~~vdl~tg~~~~lt~~-~~~~~~~~~s~dg~ 500 (826)
.+..+.++|.-.++..-+..+ ..-++-..++|||-
T Consensus 293 -~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~ 328 (343)
T KOG0286|consen 293 -DDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGM 328 (343)
T ss_pred -cCCceeEeeccccceEEEeeccCCeeEEEEECCCCc
Confidence 334555667555655544433 33456667777774
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.2e-09 Score=118.01 Aligned_cols=283 Identities=13% Similarity=0.120 Sum_probs=173.6
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
..+....+||||+.++...... +..+|. .... .+.....+.+-. +..+.|||||+.|+-.+.+.+.
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~-----~i~~~~~~~~~~-~~~~~l~~h~~~------v~~~~fs~d~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDG-----LIRIWKLEGIKS-NLLRELSGHTRG------VSDVAFSPDGSYLLSGSDDKTL 227 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCC-----cEEEeecccccc-hhhccccccccc------eeeeEECCCCcEEEEecCCceE
Confidence 3577789999999988875543 566662 2221 111111222222 3799999999999998888876
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
+.+.. .......+...+|..++....|.++.-....+..+..+.+||+.+++..... ......+..++|++||+.
T Consensus 228 riwd~-~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l-~~hs~~is~~~f~~d~~~--- 302 (456)
T KOG0266|consen 228 RIWDL-KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL-KGHSDGISGLAFSPDGNL--- 302 (456)
T ss_pred EEeec-cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEee-eccCCceEEEEECCCCCE---
Confidence 54333 1223445666788999999999999656667778899999999998866551 233346778899999997
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc---eecCCCCc--cccCceecCCCCEE
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLTESIS--SAFFPRFSPDGKFL 386 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~Lt~~~~--~~~~p~~SpDG~~l 386 (826)
|+-.+ .+..|.++|+ .++.. ..+..... ......|||+|++|
T Consensus 303 -l~s~s---------------~d~~i~vwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~l 349 (456)
T KOG0266|consen 303 -LVSAS---------------YDGTIRVWDL-----------------ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYL 349 (456)
T ss_pred -EEEcC---------------CCccEEEEEC-----------------CCCceeeeecccCCCCCCceeEEEECCCCcEE
Confidence 76654 2347889998 66662 34443333 36888999999998
Q ss_pred EEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCC
Q 003363 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 466 (826)
Q Consensus 387 ~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~ 466 (826)
+-...+ ..|.+||+..+............ .+ -...+..+++|+.++ +...
T Consensus 350 l~~~~d-----------~~~~~w~l~~~~~~~~~~~~~~~--------------~~--~~~~~~~~~~~~~i~-sg~~-- 399 (456)
T KOG0266|consen 350 LSASLD-----------RTLKLWDLRSGKSVGTYTGHSNL--------------VR--CIFSPTLSTGGKLIY-SGSE-- 399 (456)
T ss_pred EEecCC-----------CeEEEEEccCCcceeeecccCCc--------------ce--eEecccccCCCCeEE-EEeC--
Confidence 755543 45888888765543221111100 00 112334477887554 3333
Q ss_pred eEEEEEEECCCCcEEEecCCC--CCeeeEEEeecCCEEEEEEeCCCCCCeEE
Q 003363 467 SQVIISVNVSSGELLRITPAE--SNFSWSLLTLDGDNIIAVSSSPVDVPQVK 516 (826)
Q Consensus 467 ~~~l~~vdl~tg~~~~lt~~~--~~~~~~~~s~dg~~l~~~~s~~~~p~~l~ 516 (826)
+..++.+|+.++...+..... ..+....+.+..+.+.......+....+|
T Consensus 400 d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w 451 (456)
T KOG0266|consen 400 DGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLW 451 (456)
T ss_pred CceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEe
Confidence 345666677766555444333 33333455555655554444444433333
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-08 Score=96.80 Aligned_cols=222 Identities=14% Similarity=0.107 Sum_probs=136.4
Q ss_pred ceeEEEEEEeecCCCC----ccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEe-cC
Q 003363 125 RKKFMLSTVISKENEN----SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFH-VP 197 (826)
Q Consensus 125 ~~~~l~~~~i~~~~~~----~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~-~~ 197 (826)
+++.+.++.+..++.+ .++|+... ..+...+.|+||++.+-.+-++ ...+| ..++..+.+. ..
T Consensus 36 rDk~ii~W~L~~dd~~~G~~~r~~~GHs-----H~v~dv~~s~dg~~alS~swD~-----~lrlWDl~~g~~t~~f~GH~ 105 (315)
T KOG0279|consen 36 RDKTIIVWKLTSDDIKYGVPVRRLTGHS-----HFVSDVVLSSDGNFALSASWDG-----TLRLWDLATGESTRRFVGHT 105 (315)
T ss_pred cceEEEEEEeccCccccCceeeeeeccc-----eEecceEEccCCceEEeccccc-----eEEEEEecCCcEEEEEEecC
Confidence 3456666666544322 35555533 3588899999999887654433 67788 3445554443 34
Q ss_pred CCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEE
Q 003363 198 QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFV 277 (826)
Q Consensus 198 ~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v 277 (826)
..+ .++++|||.++|+..+ ++..|.+
T Consensus 106 ~dV----------lsva~s~dn~qivSGS--------------------------------------------rDkTikl 131 (315)
T KOG0279|consen 106 KDV----------LSVAFSTDNRQIVSGS--------------------------------------------RDKTIKL 131 (315)
T ss_pred Cce----------EEEEecCCCceeecCC--------------------------------------------Ccceeee
Confidence 444 7999999999998754 3457889
Q ss_pred EEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcC
Q 003363 278 ININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKES 357 (826)
Q Consensus 278 ~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 357 (826)
||.-++....+....+..-+..+.|+|.... .++++.. -+..+.++|+
T Consensus 132 wnt~g~ck~t~~~~~~~~WVscvrfsP~~~~----p~Ivs~s-------------~DktvKvWnl--------------- 179 (315)
T KOG0279|consen 132 WNTLGVCKYTIHEDSHREWVSCVRFSPNESN----PIIVSAS-------------WDKTVKVWNL--------------- 179 (315)
T ss_pred eeecccEEEEEecCCCcCcEEEEEEcCCCCC----cEEEEcc-------------CCceEEEEcc---------------
Confidence 9988776555521111446778999998644 3333311 1226778887
Q ss_pred CCCCCcce-ecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCC
Q 003363 358 SSEDLPVV-NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD 436 (826)
Q Consensus 358 ~~~~~~~~-~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (826)
.+-+.+ ....+.+......+||||..++... ....+++||++.++... +.+..+
T Consensus 180 --~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg-----------kdg~~~LwdL~~~k~ly-sl~a~~----------- 234 (315)
T KOG0279|consen 180 --RNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG-----------KDGEAMLWDLNEGKNLY-SLEAFD----------- 234 (315)
T ss_pred --CCcchhhccccccccEEEEEECCCCCEEecCC-----------CCceEEEEEccCCceeE-eccCCC-----------
Confidence 444443 4455677888999999999877522 23578999998766521 111111
Q ss_pred CCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc
Q 003363 437 CFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 479 (826)
Q Consensus 437 ~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~ 479 (826)
.+..++|+|+--.| .... +.. |-.+|++++.
T Consensus 235 --------~v~sl~fspnrywL-~~at-~~s--IkIwdl~~~~ 265 (315)
T KOG0279|consen 235 --------IVNSLCFSPNRYWL-CAAT-ATS--IKIWDLESKA 265 (315)
T ss_pred --------eEeeEEecCCceeE-eecc-CCc--eEEEeccchh
Confidence 23477899985333 3322 222 4555666654
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.9e-09 Score=109.91 Aligned_cols=234 Identities=13% Similarity=0.100 Sum_probs=151.2
Q ss_pred cccEEEEeCCC--CCeEEEEecCCCCCCeEEEEecCC---ceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeec
Q 003363 154 TGASAVVPSPS--GSKLLVVRNPENESPIQFELWSQS---QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 228 (826)
Q Consensus 154 ~~~~~~~~SPd--G~~la~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~ 228 (826)
..+....|+|. +..||..+.++ ...+|.-. ....++.....+ ..++|.|+|++|+..+.+
T Consensus 218 ~~v~~~~fhP~~~~~~lat~s~Dg-----tvklw~~~~e~~l~~l~gH~~RV----------s~VafHPsG~~L~TasfD 282 (459)
T KOG0272|consen 218 SRVGAAVFHPVDSDLNLATASADG-----TVKLWKLSQETPLQDLEGHLARV----------SRVAFHPSGKFLGTASFD 282 (459)
T ss_pred cceeeEEEccCCCccceeeeccCC-----ceeeeccCCCcchhhhhcchhhh----------eeeeecCCCceeeecccc
Confidence 56889999998 66777766543 45666222 222222222233 799999999999999988
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCC-ccceEEEeeCCC
Q 003363 229 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL-SVGQVVWAPLNE 307 (826)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~-~~~~~~wSPDg~ 307 (826)
.+-+ .|+...+.+......+..-....+|.+|+.-..++.-+.-=.|||+.+|.-.-. ..++. .+-.+.|||+|-
T Consensus 283 ~tWR--lWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~--L~gH~k~I~~V~fsPNGy 358 (459)
T KOG0272|consen 283 STWR--LWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF--LAGHIKEILSVAFSPNGY 358 (459)
T ss_pred cchh--hcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEE--ecccccceeeEeECCCce
Confidence 7655 556666677777777888888889999943333443445567899999876654 33333 677899999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecC-CCCEE
Q 003363 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSP-DGKFL 386 (826)
Q Consensus 308 ~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~Sp-DG~~l 386 (826)
. |+-.+ .++.+.++|+. .......+..+..-+..++|+| -|++|
T Consensus 359 ~----lATgs---------------~Dnt~kVWDLR----------------~r~~ly~ipAH~nlVS~Vk~~p~~g~fL 403 (459)
T KOG0272|consen 359 H----LATGS---------------SDNTCKVWDLR----------------MRSELYTIPAHSNLVSQVKYSPQEGYFL 403 (459)
T ss_pred E----EeecC---------------CCCcEEEeeec----------------ccccceecccccchhhheEecccCCeEE
Confidence 8 87766 23355566662 3334566667777789999999 56667
Q ss_pred EEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCC
Q 003363 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 466 (826)
Q Consensus 387 ~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~ 466 (826)
+..+.+ +.+.+|.-.+........+.+ .-+.++..++||+.| .++..+.
T Consensus 404 ~TasyD-----------~t~kiWs~~~~~~~ksLaGHe-------------------~kV~s~Dis~d~~~i-~t~s~DR 452 (459)
T KOG0272|consen 404 VTASYD-----------NTVKIWSTRTWSPLKSLAGHE-------------------GKVISLDISPDSQAI-ATSSFDR 452 (459)
T ss_pred EEcccC-----------cceeeecCCCcccchhhcCCc-------------------cceEEEEeccCCceE-EEeccCc
Confidence 655544 235555544444433222222 123466788999855 5666666
Q ss_pred eEEEEE
Q 003363 467 SQVIIS 472 (826)
Q Consensus 467 ~~~l~~ 472 (826)
...||.
T Consensus 453 T~KLW~ 458 (459)
T KOG0272|consen 453 TIKLWR 458 (459)
T ss_pred eeeecc
Confidence 666663
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-07 Score=98.22 Aligned_cols=125 Identities=15% Similarity=0.130 Sum_probs=73.8
Q ss_pred cCceecC-CCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeecc--CCCCCcccccCCCCCCcc
Q 003363 375 FFPRFSP-DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA--EGDCFPGLYSSSILSNPW 451 (826)
Q Consensus 375 ~~p~~Sp-DG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~f~g~~~~~~~~~~w 451 (826)
..|.|++ ||+ .+|.+.. ..|+.+|+.+.+..... ...++... .++--|| +...+++
T Consensus 197 ~rP~~~~~dg~-~~~vs~e-----------G~V~~id~~~~~~~~~~-----~~~~~~~~~~~~~wrP~----g~q~ia~ 255 (352)
T TIGR02658 197 NHPAYSNKSGR-LVWPTYT-----------GKIFQIDLSSGDAKFLP-----AIEAFTEAEKADGWRPG----GWQQVAY 255 (352)
T ss_pred cCCceEcCCCc-EEEEecC-----------CeEEEEecCCCcceecc-----eeeeccccccccccCCC----cceeEEE
Confidence 5567788 775 5677765 45999998775543211 11111111 1111222 2223789
Q ss_pred ccCCCEEEEEEEe-------CCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEe-CCCCCCeEEEEeeccc
Q 003363 452 LSDGCTMLLSSIW-------GSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS-SPVDVPQVKYGYFVDK 523 (826)
Q Consensus 452 s~Dg~~l~~~~~~-------~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s-~~~~p~~l~~~~~~~~ 523 (826)
++||+++|+.... .+...++.+|..++++..-..-........+++|++.++++.+ .... |.++|..+.
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~---VsViD~~t~ 332 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKT---LYIFDAETG 332 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCc---EEEEECcCC
Confidence 9999999886531 1235899999999887754333233445689999994444443 3333 778886544
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-07 Score=101.34 Aligned_cols=285 Identities=17% Similarity=0.166 Sum_probs=152.0
Q ss_pred eEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecC--CCCCCeEEEEecC-CceeEEEecC-CCccc
Q 003363 127 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP--ENESPIQFELWSQ-SQLEKEFHVP-QTVHG 202 (826)
Q Consensus 127 ~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~--~~~~~~~~~i~~~-~~~~~~~~~~-~~~~g 202 (826)
+.|+.+.++...++...+.... .....+..+++|++++|+.+.+. +.+.-..|.+... +.+..+-... .+. +
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~---~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~-~ 88 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVA---EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS-S 88 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEE---ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS-C
T ss_pred CcEEEEEEcCCCCCceEeeeec---CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC-C
Confidence 4566666655555443332111 11346778889999988777664 2344455555644 6665555443 121 0
Q ss_pred cccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccC
Q 003363 203 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS 282 (826)
Q Consensus 203 ~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~ 282 (826)
-..++.+|||+.|+.+.- ....+.+++++.
T Consensus 89 -------p~~i~~~~~g~~l~vany-------------------------------------------~~g~v~v~~l~~ 118 (345)
T PF10282_consen 89 -------PCHIAVDPDGRFLYVANY-------------------------------------------GGGSVSVFPLDD 118 (345)
T ss_dssp -------EEEEEECTTSSEEEEEET-------------------------------------------TTTEEEEEEECT
T ss_pred -------cEEEEEecCCCEEEEEEc-------------------------------------------cCCeEEEEEccC
Confidence 036789999997766422 124566666654
Q ss_pred -CceEecc--------CC----CCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchh
Q 003363 283 -GEVQAVK--------GI----PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 349 (826)
Q Consensus 283 -g~~~~l~--------~~----~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 349 (826)
|.+.... +. .......++.|+|||+. + |+.+.. ...|+.++++.
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~----v-~v~dlG-------------~D~v~~~~~~~----- 175 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRF----V-YVPDLG-------------ADRVYVYDIDD----- 175 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSE----E-EEEETT-------------TTEEEEEEE-T-----
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCE----E-EEEecC-------------CCEEEEEEEeC-----
Confidence 4443321 00 11234557899999996 5 554322 22577777631
Q ss_pred hhhhhhcCCCCCCcce-----ecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCccccee
Q 003363 350 SELELKESSSEDLPVV-----NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 424 (826)
Q Consensus 350 ~~~~~~~~~~~~~~~~-----~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 424 (826)
.+++.. .+.. ....+...|+|||++++...... +.|.++++...... + ...
T Consensus 176 ----------~~~~l~~~~~~~~~~-G~GPRh~~f~pdg~~~Yv~~e~s----------~~v~v~~~~~~~g~-~--~~~ 231 (345)
T PF10282_consen 176 ----------DTGKLTPVDSIKVPP-GSGPRHLAFSPDGKYAYVVNELS----------NTVSVFDYDPSDGS-L--TEI 231 (345)
T ss_dssp ----------TS-TEEEEEEEECST-TSSEEEEEE-TTSSEEEEEETTT----------TEEEEEEEETTTTE-E--EEE
T ss_pred ----------CCceEEEeecccccc-CCCCcEEEEcCCcCEEEEecCCC----------CcEEEEeecccCCc-e--eEE
Confidence 222221 2222 23367788999999865544332 56777776621110 0 000
Q ss_pred eeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC--C-CeeeEEEeecCCE
Q 003363 425 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE--S-NFSWSLLTLDGDN 501 (826)
Q Consensus 425 ~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~--~-~~~~~~~s~dg~~ 501 (826)
..+... +. .+.+. .....+.++|||++||++....+...+|.+|..+|+++.+..-. + ......++++|+.
T Consensus 232 ~~~~~~--~~--~~~~~--~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~ 305 (345)
T PF10282_consen 232 QTISTL--PE--GFTGE--NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRY 305 (345)
T ss_dssp EEEESC--ET--TSCSS--SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSE
T ss_pred EEeeec--cc--ccccc--CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCE
Confidence 111111 11 11110 02236678999999988766667778888888888887764321 2 2344577889998
Q ss_pred EEEEEeCCCCCCeEEEEeec
Q 003363 502 IIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 502 l~~~~s~~~~p~~l~~~~~~ 521 (826)
++......+. |.+++..
T Consensus 306 l~Va~~~s~~---v~vf~~d 322 (345)
T PF10282_consen 306 LYVANQDSNT---VSVFDID 322 (345)
T ss_dssp EEEEETTTTE---EEEEEEE
T ss_pred EEEEecCCCe---EEEEEEe
Confidence 7776655444 5555543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-08 Score=104.66 Aligned_cols=268 Identities=15% Similarity=0.172 Sum_probs=162.7
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
.++....|+-||..||+....+ ..++| ..|....... ...|.| -.+.|+-+|.+|+-..-+++.-
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G-----~~riw~~~G~l~~tl~---~HkgPI------~slKWnk~G~yilS~~vD~tti 301 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDG-----EARIWNKDGNLISTLG---QHKGPI------FSLKWNKKGTYILSGGVDGTTI 301 (524)
T ss_pred CCcceEEecCCCCeEEEeecCc-----EEEEEecCchhhhhhh---ccCCce------EEEEEcCCCCEEEeccCCccEE
Confidence 5689999999999999987765 68888 4554443332 223334 7999999999999887666543
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceE-eccCCCCCCccceEEEeeCCCCCcc
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~-~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
.|+...+.......-+....-.++|..+ .+-........|+|+-+....+. .+ +..+..+..+.|.|.|+-
T Consensus 302 --lwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~--~GH~g~V~alk~n~tg~L--- 373 (524)
T KOG0273|consen 302 --LWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTF--IGHHGEVNALKWNPTGSL--- 373 (524)
T ss_pred --EEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceee--ecccCceEEEEECCCCce---
Confidence 2332111111111111111122334332 12222234456888777655443 33 335567788999999996
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCC-------
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK------- 384 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~------- 384 (826)
|+-.+. +..|-++... +++....|..+...+....|||+|.
T Consensus 374 -LaS~Sd---------------D~TlkiWs~~----------------~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~ 421 (524)
T KOG0273|consen 374 -LASCSD---------------DGTLKIWSMG----------------QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNM 421 (524)
T ss_pred -EEEecC---------------CCeeEeeecC----------------CCcchhhhhhhccceeeEeecCCCCccCCCcC
Confidence 665552 2245555541 4556677777777788899999986
Q ss_pred --EEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEE
Q 003363 385 --FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 462 (826)
Q Consensus 385 --~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~ 462 (826)
.|+..+.+ ..+.+||...+........ +...+..++|||||++++ +.
T Consensus 422 ~~~l~sas~d-----------stV~lwdv~~gv~i~~f~k-------------------H~~pVysvafS~~g~ylA-sG 470 (524)
T KOG0273|consen 422 NLMLASASFD-----------STVKLWDVESGVPIHTLMK-------------------HQEPVYSVAFSPNGRYLA-SG 470 (524)
T ss_pred CceEEEeecC-----------CeEEEEEccCCceeEeecc-------------------CCCceEEEEecCCCcEEE-ec
Confidence 23333322 4577777766554321101 112456889999999774 33
Q ss_pred EeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeC
Q 003363 463 IWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 508 (826)
Q Consensus 463 ~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~ 508 (826)
+.++...|| +..++++.+-..+.+.+....|+.+|+.+....+.
T Consensus 471 s~dg~V~iw--s~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 471 SLDGCVHIW--STKTGKLVKSYQGTGGIFELCWNAAGDKLGACASD 514 (524)
T ss_pred CCCCeeEec--cccchheeEeecCCCeEEEEEEcCCCCEEEEEecC
Confidence 444555555 56688877766666666677889999877766654
|
|
| >COG4757 Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.5e-09 Score=101.24 Aligned_cols=239 Identities=17% Similarity=0.150 Sum_probs=136.4
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcc
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~ 650 (826)
.||..+.+..|... ++.+-.+.+-|+.+. ....|...++.++.+||.|+++||||.+++-..........+.+.
T Consensus 13 ~DG~~l~~~~~pA~-----~~~~g~~~va~a~Gv-~~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~~~~~Dw 86 (281)
T COG4757 13 PDGYSLPGQRFPAD-----GKASGRLVVAGATGV-GQYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQWRYLDW 86 (281)
T ss_pred CCCccCccccccCC-----CCCCCcEEecccCCc-chhHhHHHHHHhhccCceEEEEecccccCCCccccccCccchhhh
Confidence 46777877777432 233333444454433 234677788899999999999999997665433322222333344
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEE-EecCC--ccchhhh-ccCCCCCCchhhhhc
Q 003363 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA-AARNP--LCNLALM-VGTTDIPDWCYVESY 726 (826)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~-v~~~p--~~~~~~~-~~~~~~~~~~~~~~~ 726 (826)
...|+.++++++.+.. ..-+...+|||+||.+...+ .+++ ++.++ +..++ ...+... ...--...|+.....
T Consensus 87 A~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~-~~~~-k~~a~~vfG~gagwsg~m~~~~~l~~~~l~~lv~p~ 162 (281)
T COG4757 87 ARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLL-GQHP-KYAAFAVFGSGAGWSGWMGLRERLGAVLLWNLVGPP 162 (281)
T ss_pred hhcchHHHHHHHHhhC--CCCceEEeeccccceeeccc-ccCc-ccceeeEeccccccccchhhhhcccceeeccccccc
Confidence 5679999999998852 34578999999999876544 4556 33332 22221 1111000 000000001100000
Q ss_pred ----cCcCCccCCC----CCC--hhhHHHHhhc------Ccc-----cccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHH
Q 003363 727 ----GSKGKDSFTE----SPS--VEDLTRFHSK------SPI-----SHISKVKTPTIFLLGAQDLRVPVSNGLQYARAL 785 (826)
Q Consensus 727 ----~~~~~~~~~~----~~~--~~~~~~~~~~------sp~-----~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l 785 (826)
.......+.+ .|. ..++..+-+. +|. +...++.+|++.+...+|+.+|+...+.+.+..
T Consensus 163 lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi~~~~~~DD~w~P~As~d~f~~~y 242 (281)
T COG4757 163 LTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPITFSRALDDPWAPPASRDAFASFY 242 (281)
T ss_pred hhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCceeeeccCCCCcCCHHHHHHHHHhh
Confidence 0000000111 111 1222222222 221 234567899999999999999999999888887
Q ss_pred HhCCCCEEEEEeCCC----CCCCCCCCCHHHHHHHHHHHH
Q 003363 786 REKGVETKVIVFPND----VHGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 786 ~~~g~~~~~~~~p~~----~H~~~~~~~~~~~~~~i~~w~ 821 (826)
+++ ++++..++.+ ||.-...+..+..++++++||
T Consensus 243 ~nA--pl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 243 RNA--PLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred hcC--cccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 764 6777777765 787544444456788899987
|
|
| >cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.5e-10 Score=128.28 Aligned_cols=128 Identities=25% Similarity=0.286 Sum_probs=92.7
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHH-CC-cEEEEECCC-CCCCCchhhhhcCCCCCCcchH
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VG-YSLLIVNYR-GSLGFGEEALQSLPGKVGSQDV 652 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~-~G-~~Vl~~d~r-G~~g~G~~~~~~~~~~~~~~~~ 652 (826)
+...++.|......++.|+||++|||++........ ....|+. .+ ++|+.+||| |..|+........++ ...+
T Consensus 79 l~l~i~~p~~~~~~~~~pv~v~ihGG~~~~g~~~~~-~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~---n~g~ 154 (493)
T cd00312 79 LYLNVYTPKNTKPGNSLPVMVWIHGGGFMFGSGSLY-PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPG---NYGL 154 (493)
T ss_pred CeEEEEeCCCCCCCCCCCEEEEEcCCccccCCCCCC-ChHHHHhcCCCEEEEEecccccccccccCCCCCCCc---chhH
Confidence 555788887543467889999999998765544332 2344444 33 999999999 666665443222233 3347
Q ss_pred HHHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHh--CCCceeEEEecCCccc
Q 003363 653 NDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCN 707 (826)
Q Consensus 653 ~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~~~ 707 (826)
.|+..+++|+.++ ...|+++|.|+|+|+||+++.+++.. .+.+|+++|+.++...
T Consensus 155 ~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 155 KDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred HHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 8999999999875 34799999999999999999988775 2457999999887654
|
) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate. |
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-07 Score=99.57 Aligned_cols=205 Identities=17% Similarity=0.158 Sum_probs=117.5
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc--------eeEEEecCCCccccccCCCcccceeecCCCCeEEEE
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ--------LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 225 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~--------~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~ 225 (826)
+.+...+|++||++|+.+.+.. +.-...-+|+.|. .+++..+..... -.|..+.=|-|+. ++|-
T Consensus 104 G~I~Di~Wd~ds~RI~avGEGr-erfg~~F~~DSG~SvGei~GhSr~ins~~~Kps------RPfRi~T~sdDn~-v~ff 175 (603)
T KOG0318|consen 104 GPIKDISWDFDSKRIAAVGEGR-ERFGHVFLWDSGNSVGEITGHSRRINSVDFKPS------RPFRIATGSDDNT-VAFF 175 (603)
T ss_pred cccccceeCCCCcEEEEEecCc-cceeEEEEecCCCccceeeccceeEeeeeccCC------CceEEEeccCCCe-EEEe
Confidence 5688999999999999987765 4444555664432 233322221110 1233444444443 4443
Q ss_pred eecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCC-CccCceEEEEEccCCceE-ecc-CCCCCCccceEEE
Q 003363 226 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYA-GKRQPSLFVININSGEVQ-AVK-GIPKSLSVGQVVW 302 (826)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~-~~~~~~l~v~d~~~g~~~-~l~-~~~~~~~~~~~~w 302 (826)
--.+ .+-.....+|..+....+|+|| |+.+. ...+..++++|-.+|+.. .+. ..+...++..++|
T Consensus 176 eGPP-----------FKFk~s~r~HskFV~~VRysPD-G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsW 243 (603)
T KOG0318|consen 176 EGPP-----------FKFKSSFREHSKFVNCVRYSPD-GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSW 243 (603)
T ss_pred eCCC-----------eeeeecccccccceeeEEECCC-CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEE
Confidence 1111 2233445567778889999999 66654 345688999998888754 442 1233446778999
Q ss_pred eeCCCCCccEEEEEeecCcce----------------------eeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCC
Q 003363 303 APLNEGLHQYLVFVGWSSETR----------------------KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE 360 (826)
Q Consensus 303 SPDg~~~~~~lvf~~~~~~~~----------------------~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 360 (826)
|||+++ ++-++-+..-+ .+|..| ...+|..+.+...-+ +. ...+
T Consensus 244 sPDs~~----~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW---qkd~lItVSl~G~in--~l-----n~~d 309 (603)
T KOG0318|consen 244 SPDSTQ----FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW---QKDHLITVSLSGTIN--YL-----NPSD 309 (603)
T ss_pred CCCCce----EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE---eCCeEEEEEcCcEEE--Ee-----cccC
Confidence 999999 88776433211 122222 122343333310000 00 0002
Q ss_pred CCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 361 DLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 361 ~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
....+.+..+...+.....||||++|+-.+.+
T Consensus 310 ~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 310 PSVLKVISGHNKSITALTVSPDGKTIYSGSYD 341 (603)
T ss_pred CChhheecccccceeEEEEcCCCCEEEeeccC
Confidence 22445566677788899999999998776655
|
|
| >PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-09 Score=117.07 Aligned_cols=190 Identities=18% Similarity=0.196 Sum_probs=101.5
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCC------chhh-hhc-------------CCCCCCc
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGF------GEEA-LQS-------------LPGKVGS 649 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~------G~~~-~~~-------------~~~~~~~ 649 (826)
+++|+|||-||-++. ...|...+..||++||+|++++.|-.... .... ... +......
T Consensus 98 ~~~PvvIFSHGlgg~--R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGS--RTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDPE 175 (379)
T ss_dssp S-EEEEEEE--TT----TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----GG
T ss_pred CCCCEEEEeCCCCcc--hhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccch
Confidence 779999999996655 56788999999999999999999953221 1110 000 0000000
Q ss_pred -----------chHHHHHHHHHHHHHc--------------------CCCCCCcEEEEEecchHHHHHHHHHhCCCceeE
Q 003363 650 -----------QDVNDVLTAIDHVIDM--------------------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 698 (826)
Q Consensus 650 -----------~~~~D~~~~i~~l~~~--------------------~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a 698 (826)
.-..|+..+++.|.+. +.+|.++|+++|||+||..++.++.+. .+|++
T Consensus 176 ~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d-~r~~~ 254 (379)
T PF03403_consen 176 EEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQD-TRFKA 254 (379)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH--TT--E
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhc-cCcce
Confidence 1134666677666531 236788999999999999999888764 78999
Q ss_pred EEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHH
Q 003363 699 AAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNG 778 (826)
Q Consensus 699 ~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~ 778 (826)
+|+..|..- |..+ .....++.|+|+|+.+. +.-..+.
T Consensus 255 ~I~LD~W~~------------------------------Pl~~-----------~~~~~i~~P~L~InSe~--f~~~~~~ 291 (379)
T PF03403_consen 255 GILLDPWMF------------------------------PLGD-----------EIYSKIPQPLLFINSES--FQWWENI 291 (379)
T ss_dssp EEEES---T------------------------------TS-G-----------GGGGG--S-EEEEEETT--T--HHHH
T ss_pred EEEeCCccc------------------------------CCCc-----------ccccCCCCCEEEEECcc--cCChhhH
Confidence 998887431 0000 00134678999998875 2222333
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCCCCC------CC------------CC----HHHHHHHHHHHHHHHcC
Q 003363 779 LQYARALREKGVETKVIVFPNDVHGIE------RP------------QS----DFESFLNIGLWFKKYCK 826 (826)
Q Consensus 779 ~~~~~~l~~~g~~~~~~~~p~~~H~~~------~~------------~~----~~~~~~~i~~w~~~~l~ 826 (826)
..+.+ +...+....++.+.|..|.-. .+ .+ .....+.+++||++||+
T Consensus 292 ~~~~~-~~~~~~~~~~~ti~gt~H~s~sD~~ll~P~~l~~~~~~~g~~dp~~a~~i~~~~~l~FL~~~L~ 360 (379)
T PF03403_consen 292 FRMKK-VISNNKESRMLTIKGTAHLSFSDFPLLSPWLLGKFLGLKGSIDPERALRINNRASLAFLRRHLG 360 (379)
T ss_dssp HHHHT-T--TTS-EEEEEETT--GGGGSGGGGTS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH-HhccCCCcEEEEECCCcCCCcchhhhhhHHHHHHHhccccCcCHHHHHHHHHHHHHHHHHHhcC
Confidence 33332 333455678899999999521 11 01 12334568899999974
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.6e-08 Score=108.59 Aligned_cols=246 Identities=17% Similarity=0.231 Sum_probs=142.3
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEE--ecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEF--HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~--~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
.+...++||||+.||...+++ ...+|+ .....-+| +.+.++ .++.|+.+|+.|+..+-+++.
T Consensus 352 ~i~~l~YSpDgq~iaTG~eDg-----KVKvWn~~SgfC~vTFteHts~V----------t~v~f~~~g~~llssSLDGtV 416 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAEDG-----KVKVWNTQSGFCFVTFTEHTSGV----------TAVQFTARGNVLLSSSLDGTV 416 (893)
T ss_pred ceeeEEECCCCcEEEeccCCC-----cEEEEeccCceEEEEeccCCCce----------EEEEEEecCCEEEEeecCCeE
Confidence 578899999999999865543 577884 33233333 334444 799999999999999999988
Q ss_pred CCCCccC--CCCCCC---CCCccCCCCCCcceeecCCCccCCC--ccCceEEEEEccCCceEeccCCCC-CCccceEEEe
Q 003363 232 SKPTFSL--GSTKGG---SSDKDCNSWKGQGDWEEDWGETYAG--KRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWA 303 (826)
Q Consensus 232 ~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~d~g~~~~~--~~~~~l~v~d~~~g~~~~l~~~~~-~~~~~~~~wS 303 (826)
+.+.+.. .+..-. +....+... .+. |+.... .....||||++++|+...+ ..+ +..+...+|+
T Consensus 417 RAwDlkRYrNfRTft~P~p~Qfscvav------D~s-GelV~AG~~d~F~IfvWS~qTGqllDi--LsGHEgPVs~l~f~ 487 (893)
T KOG0291|consen 417 RAWDLKRYRNFRTFTSPEPIQFSCVAV------DPS-GELVCAGAQDSFEIFVWSVQTGQLLDI--LSGHEGPVSGLSFS 487 (893)
T ss_pred EeeeecccceeeeecCCCceeeeEEEE------cCC-CCEEEeeccceEEEEEEEeecCeeeeh--hcCCCCcceeeEEc
Confidence 7654431 111111 111111111 111 232211 1346899999999998766 333 4467788999
Q ss_pred eCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCC
Q 003363 304 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDG 383 (826)
Q Consensus 304 PDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG 383 (826)
|+|.. |+..+|+.. +.++|+=. ..++...|.- ...+....|+|||
T Consensus 488 ~~~~~----LaS~SWDkT---------------VRiW~if~---------------s~~~vEtl~i-~sdvl~vsfrPdG 532 (893)
T KOG0291|consen 488 PDGSL----LASGSWDKT---------------VRIWDIFS---------------SSGTVETLEI-RSDVLAVSFRPDG 532 (893)
T ss_pred cccCe----EEeccccce---------------EEEEEeec---------------cCceeeeEee-ccceeEEEEcCCC
Confidence 99998 988887543 33444300 3334444432 2346788999999
Q ss_pred CEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCccccee---------eeeeeeeccCCCCCcccccCCCCCCccccC
Q 003363 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV---------DVIPVVQCAEGDCFPGLYSSSILSNPWLSD 454 (826)
Q Consensus 384 ~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~~f~g~~~~~~~~~~ws~D 454 (826)
+.|+...-+. +|-.||...+..+-...+.. +.+..-+......| ..+++|+|
T Consensus 533 ~elaVaTldg-----------qItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~F--------tti~ySaD 593 (893)
T KOG0291|consen 533 KELAVATLDG-----------QITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTF--------TTICYSAD 593 (893)
T ss_pred CeEEEEEecc-----------eEEEEEhhhceeeccccchhhccccccccceeehhhcccCCce--------EEEEEcCC
Confidence 9999887662 45566654332211111110 11111111112233 37789999
Q ss_pred CCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003363 455 GCTMLLSSIWGSSQVIISVNVSSGELL 481 (826)
Q Consensus 455 g~~l~~~~~~~~~~~l~~vdl~tg~~~ 481 (826)
|+.|+.. +....+..+++.++-+.
T Consensus 594 G~~IlAg---G~sn~iCiY~v~~~vll 617 (893)
T KOG0291|consen 594 GKCILAG---GESNSICIYDVPEGVLL 617 (893)
T ss_pred CCEEEec---CCcccEEEEECchhhee
Confidence 9976543 23345666677676543
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.5e-08 Score=104.03 Aligned_cols=269 Identities=14% Similarity=0.161 Sum_probs=148.6
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003363 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (826)
Q Consensus 103 ~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (826)
.++|+++.+++... ...+.++++.... ....+.... ..+....|+|+|+.|++....+ .+
T Consensus 16 ~~~~~~~~l~~~~~---------~g~i~i~~~~~~~-~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~~~-----~i 75 (289)
T cd00200 16 AFSPDGKLLATGSG---------DGTIKVWDLETGE-LLRTLKGHT-----GPVRDVAASADGTYLASGSSDK-----TI 75 (289)
T ss_pred EEcCCCCEEEEeec---------CcEEEEEEeeCCC-cEEEEecCC-----cceeEEEECCCCCEEEEEcCCC-----eE
Confidence 44889888876532 3355666654321 222222222 3356899999999888876532 34
Q ss_pred EEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceee
Q 003363 183 ELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (826)
Q Consensus 183 ~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (826)
.+|+ .++......... +. +..+.|+|+++.|+....+.... .|+............+........|.
T Consensus 76 ~i~~~~~~~~~~~~~~~~---~~------i~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~i~~~~~~ 144 (289)
T cd00200 76 RLWDLETGECVRTLTGHT---SY------VSSVAFSPDGRILSSSSRDKTIK--VWDVETGKCLTTLRGHTDWVNSVAFS 144 (289)
T ss_pred EEEEcCcccceEEEeccC---Cc------EEEEEEcCCCCEEEEecCCCeEE--EEECCCcEEEEEeccCCCcEEEEEEc
Confidence 4552 222222222111 11 27899999987666554333221 22221111111122233334456677
Q ss_pred cCCCccCCCcc-CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEE
Q 003363 261 EDWGETYAGKR-QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 339 (826)
Q Consensus 261 ~d~g~~~~~~~-~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~ 339 (826)
++ +..+.... ...|++||+.+++..... ......+..+.|+|+++. |++.+. +..|..
T Consensus 145 ~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~----l~~~~~---------------~~~i~i 203 (289)
T cd00200 145 PD-GTFVASSSQDGTIKLWDLRTGKCVATL-TGHTGEVNSVAFSPDGEK----LLSSSS---------------DGTIKL 203 (289)
T ss_pred Cc-CCEEEEEcCCCcEEEEEccccccceeE-ecCccccceEEECCCcCE----EEEecC---------------CCcEEE
Confidence 76 34433333 788999999877654431 222336778999999987 877762 336888
Q ss_pred EEcccccchhhhhhhhcCCCCCCcc-eecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCC
Q 003363 340 VRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 418 (826)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 418 (826)
+|+ ..+.. ..+..+...+....|+||++.++..+.+ ..|++||+.++....
T Consensus 204 ~d~-----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------~~i~i~~~~~~~~~~ 255 (289)
T cd00200 204 WDL-----------------STGKCLGTLRGHENGVNSVAFSPDGYLLASGSED-----------GTIRVWDLRTGECVQ 255 (289)
T ss_pred EEC-----------------CCCceecchhhcCCceEEEEEcCCCcEEEEEcCC-----------CcEEEEEcCCceeEE
Confidence 887 33333 3333455567889999997765543312 458889887644321
Q ss_pred cccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003363 419 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (826)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (826)
.... ....+..+.|+++++.|+ +...++...+|
T Consensus 256 ~~~~-------------------~~~~i~~~~~~~~~~~l~-~~~~d~~i~iw 288 (289)
T cd00200 256 TLSG-------------------HTNSVTSLAWSPDGKRLA-SGSADGTIRIW 288 (289)
T ss_pred Eccc-------------------cCCcEEEEEECCCCCEEE-EecCCCeEEec
Confidence 1110 011344678999988654 44444544444
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-08 Score=115.69 Aligned_cols=104 Identities=12% Similarity=0.019 Sum_probs=73.6
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCC-----
Q 003363 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE----- 175 (826)
Q Consensus 101 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~----- 175 (826)
.+..||||++++|.....+ ..+.++..||+.+. ++..++++... ....|+|||||+.|+|+++..
T Consensus 354 spaiSpdG~~vA~v~~~~~-~~~d~~s~Lwv~~~---gg~~~~lt~g~------~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 354 SAALSRSGRQVAAVVTLGR-GAPDPASSLWVGPL---GGVAVQVLEGH------SLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cceECCCCCEEEEEEeecC-CCCCcceEEEEEeC---CCcceeeecCC------CCCCceECCCCCceEEEecCcceEEE
Confidence 5567999999999987666 33346789999874 33446666543 378899999999999987541
Q ss_pred ---CCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEe
Q 003363 176 ---NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 226 (826)
Q Consensus 176 ---~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~ 226 (826)
++..+++.++ +.+..++ .+...+ ..++|||||++|||+.
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~--~~~g~I----------ssl~wSpDG~RiA~i~ 466 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS--RVPGPI----------SELQLSRDGVRAAMII 466 (591)
T ss_pred eccCCCceEEEEeccCchhhh--ccCCCc----------CeEEECCCCCEEEEEE
Confidence 2344666666 4444433 323333 8999999999999986
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.2e-08 Score=110.98 Aligned_cols=203 Identities=18% Similarity=0.203 Sum_probs=134.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecC---CceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ---SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~ 230 (826)
..+....|||||++++-.+.+. .+.+|+- +...+.+ .+....| ..+.|+|+|+.|+..+.+.+
T Consensus 204 ~~v~~~~fs~d~~~l~s~s~D~-----tiriwd~~~~~~~~~~l---~gH~~~v------~~~~f~p~g~~i~Sgs~D~t 269 (456)
T KOG0266|consen 204 RGVSDVAFSPDGSYLLSGSDDK-----TLRIWDLKDDGRNLKTL---KGHSTYV------TSVAFSPDGNLLVSGSDDGT 269 (456)
T ss_pred cceeeeEECCCCcEEEEecCCc-----eEEEeeccCCCeEEEEe---cCCCCce------EEEEecCCCCEEEEecCCCc
Confidence 5699999999999887765543 4566633 2333333 2333333 79999999998988888887
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCce---EeccCCCCCCccceEEEeeCCC
Q 003363 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV---QAVKGIPKSLSVGQVVWAPLNE 307 (826)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~---~~l~~~~~~~~~~~~~wSPDg~ 307 (826)
.+ .|+....+.......+...+....|.++.....+...+..|.+||+.++.. ..+.+......+..+.|+|+|+
T Consensus 270 vr--iWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~ 347 (456)
T KOG0266|consen 270 VR--IWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK 347 (456)
T ss_pred EE--EEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCc
Confidence 66 444434555566667777777778888876667777789999999999983 2332111111568899999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCc---cccCceecCCCC
Q 003363 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS---SAFFPRFSPDGK 384 (826)
Q Consensus 308 ~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~---~~~~p~~SpDG~ 384 (826)
. |+... .+..+-.+|+. ........+.+.. ....+..+++|+
T Consensus 348 ~----ll~~~---------------~d~~~~~w~l~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (456)
T KOG0266|consen 348 Y----LLSAS---------------LDRTLKLWDLR----------------SGKSVGTYTGHSNLVRCIFSPTLSTGGK 392 (456)
T ss_pred E----EEEec---------------CCCeEEEEEcc----------------CCcceeeecccCCcceeEecccccCCCC
Confidence 7 76655 22256666662 1222333333322 355677789999
Q ss_pred EEEEEeccCCCCCCCCcccceEEEEeCCCCCCCC
Q 003363 385 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 418 (826)
Q Consensus 385 ~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 418 (826)
.|+-.+.+ ..|++||..++...+
T Consensus 393 ~i~sg~~d-----------~~v~~~~~~s~~~~~ 415 (456)
T KOG0266|consen 393 LIYSGSED-----------GSVYVWDSSSGGILQ 415 (456)
T ss_pred eEEEEeCC-----------ceEEEEeCCccchhh
Confidence 88755544 459999998866543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.4e-09 Score=100.73 Aligned_cols=154 Identities=18% Similarity=0.314 Sum_probs=97.7
Q ss_pred ceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCC
Q 003363 212 GISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI 291 (826)
Q Consensus 212 ~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~ 291 (826)
.+.|+|+|+.|+.......... ++.+. +...||.++..+..+..+. .
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~------------------------------~ks~~--~~~~l~~~~~~~~~~~~i~-l 56 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKS------------------------------GKSYY--GEFELFYLNEKNIPVESIE-L 56 (194)
T ss_pred EEEecccCCEEEEEEEEeeccC------------------------------cceEE--eeEEEEEEecCCCccceee-c
Confidence 6789999999999876321110 11111 3478999998877776663 3
Q ss_pred CCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCC
Q 003363 292 PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI 371 (826)
Q Consensus 292 ~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~ 371 (826)
.....+.+++|+|+|+. ++.... ..+..+..+|+ ....+..+. .
T Consensus 57 ~~~~~I~~~~WsP~g~~----favi~g-------------~~~~~v~lyd~-----------------~~~~i~~~~--~ 100 (194)
T PF08662_consen 57 KKEGPIHDVAWSPNGNE----FAVIYG-------------SMPAKVTLYDV-----------------KGKKIFSFG--T 100 (194)
T ss_pred cCCCceEEEEECcCCCE----EEEEEc-------------cCCcccEEEcC-----------------cccEeEeec--C
Confidence 33445889999999998 876641 12235677776 433334443 2
Q ss_pred ccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCcc
Q 003363 372 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 451 (826)
Q Consensus 372 ~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~w 451 (826)
.......|||+|++|+...... ....|.+||....+........ ....+.|
T Consensus 101 ~~~n~i~wsP~G~~l~~~g~~n--------~~G~l~~wd~~~~~~i~~~~~~---------------------~~t~~~W 151 (194)
T PF08662_consen 101 QPRNTISWSPDGRFLVLAGFGN--------LNGDLEFWDVRKKKKISTFEHS---------------------DATDVEW 151 (194)
T ss_pred CCceEEEECCCCCEEEEEEccC--------CCcEEEEEECCCCEEeeccccC---------------------cEEEEEE
Confidence 3445689999999999877542 2356889998753332111100 1236789
Q ss_pred ccCCCEEEEEEE
Q 003363 452 LSDGCTMLLSSI 463 (826)
Q Consensus 452 s~Dg~~l~~~~~ 463 (826)
||||++++..+.
T Consensus 152 sPdGr~~~ta~t 163 (194)
T PF08662_consen 152 SPDGRYLATATT 163 (194)
T ss_pred cCCCCEEEEEEe
Confidence 999998876654
|
|
| >KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.5e-09 Score=100.09 Aligned_cols=106 Identities=23% Similarity=0.313 Sum_probs=72.4
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHH-HCCcEEEEECCCCCCCCchhhhhcCCCCCCcchH
Q 003363 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652 (826)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la-~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~ 652 (826)
.++..++-.|. ....|+++++|||+.+ .-.|...++.+. ..-..|+++|.||+++.--+-...+ -.+...
T Consensus 60 ~t~n~Y~t~~~----~t~gpil~l~HG~G~S--~LSfA~~a~el~s~~~~r~~a~DlRgHGeTk~~~e~dl---S~eT~~ 130 (343)
T KOG2564|consen 60 LTFNVYLTLPS----ATEGPILLLLHGGGSS--ALSFAIFASELKSKIRCRCLALDLRGHGETKVENEDDL---SLETMS 130 (343)
T ss_pred ceEEEEEecCC----CCCccEEEEeecCccc--chhHHHHHHHHHhhcceeEEEeeccccCccccCChhhc---CHHHHH
Confidence 35766666664 5677999999998876 446766777664 3457889999999554322211111 112236
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHh
Q 003363 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 691 (826)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~ 691 (826)
+|+.+.++++... .+.+|.|+||||||.++.+.+..
T Consensus 131 KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~ 166 (343)
T KOG2564|consen 131 KDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAAS 166 (343)
T ss_pred HHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhh
Confidence 7888877777644 34679999999999999887764
|
|
| >PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.7e-08 Score=99.75 Aligned_cols=106 Identities=20% Similarity=0.186 Sum_probs=78.9
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC
Q 003363 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (826)
.+.+..+||-+||.|++ ...|......|.+.|++++.+||+|.+ ..... +. ....-.+-...+..++++-.
T Consensus 31 ~gs~~gTVv~~hGsPGS--H~DFkYi~~~l~~~~iR~I~iN~PGf~---~t~~~--~~--~~~~n~er~~~~~~ll~~l~ 101 (297)
T PF06342_consen 31 SGSPLGTVVAFHGSPGS--HNDFKYIRPPLDEAGIRFIGINYPGFG---FTPGY--PD--QQYTNEERQNFVNALLDELG 101 (297)
T ss_pred CCCCceeEEEecCCCCC--ccchhhhhhHHHHcCeEEEEeCCCCCC---CCCCC--cc--cccChHHHHHHHHHHHHHcC
Confidence 34556799999999987 456777888999999999999999943 32110 11 11224556666777777655
Q ss_pred CCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCc
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~ 705 (826)
++ +++.++|||.|+-.|+.++..+| ..++++++|+
T Consensus 102 i~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 102 IK-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred CC-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 65 78999999999999999999885 5677877763
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.7e-07 Score=87.05 Aligned_cols=227 Identities=17% Similarity=0.262 Sum_probs=132.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
..+...+|||.|++||..+-.. ...|| .+++.+-+..+ .+..+-| .+++||++|..||.-+.+
T Consensus 62 rsVRsvAwsp~g~~La~aSFD~-----t~~Iw~k~~~efecv~~l-EGHEnEV------K~Vaws~sG~~LATCSRD--- 126 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASASFDA-----TVVIWKKEDGEFECVATL-EGHENEV------KCVAWSASGNYLATCSRD--- 126 (312)
T ss_pred heeeeeeecCCCcEEEEeeccc-----eEEEeecCCCceeEEeee-eccccce------eEEEEcCCCCEEEEeeCC---
Confidence 4589999999999999887654 56777 23444443332 3443333 799999999999987654
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc-eE---eccCCCCCCccceEEEeeCCC
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQ---AVKGIPKSLSVGQVVWAPLNE 307 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~---~l~~~~~~~~~~~~~wSPDg~ 307 (826)
..+|+|.++.+. .. .| .+....+-.+.|.|.-.
T Consensus 127 -----------------------------------------KSVWiWe~deddEfec~aVL--~~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 127 -----------------------------------------KSVWIWEIDEDDEFECIAVL--QEHTQDVKHVIWHPTED 163 (312)
T ss_pred -----------------------------------------CeEEEEEecCCCcEEEEeee--ccccccccEEEEcCCcc
Confidence 467888776443 22 23 34455678999999766
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCC-CcceecCCCCccccCceecCCCCEE
Q 003363 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVNLTESISSAFFPRFSPDGKFL 386 (826)
Q Consensus 308 ~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~Lt~~~~~~~~p~~SpDG~~l 386 (826)
|+|.+. |+ +.|..++-..+ +. .-...|..+...+....|.|.|.+|
T Consensus 164 -----lL~S~S------------YD--nTIk~~~~~~d--------------ddW~c~~tl~g~~~TVW~~~F~~~G~rl 210 (312)
T KOG0645|consen 164 -----LLFSCS------------YD--NTIKVYRDEDD--------------DDWECVQTLDGHENTVWSLAFDNIGSRL 210 (312)
T ss_pred -----eeEEec------------cC--CeEEEEeecCC--------------CCeeEEEEecCccceEEEEEecCCCceE
Confidence 666551 22 24444443100 11 2245677777788899999999999
Q ss_pred EEEeccCCCC-----CC-CCcccceEEEEeCCCCCCCCcccceeeeeeeeeccC---CCCC------cccccCCCCCCcc
Q 003363 387 VFLSAKSSVD-----SG-AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAE---GDCF------PGLYSSSILSNPW 451 (826)
Q Consensus 387 ~f~s~~~~~~-----~g-~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~f------~g~~~~~~~~~~w 451 (826)
+-.+.+.++. .+ ++.....||.+.|.+ +.. -+.+.++.+.+..... +..+ .+.+...++.+.|
T Consensus 211 ~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~-~~I-aS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w 288 (312)
T KOG0645|consen 211 VSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDN-GVI-ASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQW 288 (312)
T ss_pred EEecCCcceEeeeeccCcchhcccceEeeeecc-cce-EeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEE
Confidence 8887765321 00 011112344444441 111 1122223333332221 1111 1134456778889
Q ss_pred ccCCCEEEEEEEeCCeEEEEEE
Q 003363 452 LSDGCTMLLSSIWGSSQVIISV 473 (826)
Q Consensus 452 s~Dg~~l~~~~~~~~~~~l~~v 473 (826)
.|.++.++++...+|..++|.+
T Consensus 289 ~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 289 NPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred cCCCCCceeecCCCceEEEEEe
Confidence 9866666677666677777754
|
|
| >TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.7e-08 Score=108.59 Aligned_cols=222 Identities=15% Similarity=0.173 Sum_probs=127.1
Q ss_pred CceeeeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC---ccchHHHHHHHHCCcEEEEECCCCCCCCchhh
Q 003363 563 GVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL---SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 639 (826)
Q Consensus 563 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~---~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~ 639 (826)
+..+.+.++ .++.+.|.|... ...+.| ||+++..-...+. ..-...+++|.++||.|+++|.+.-+. .
T Consensus 191 Pg~VV~~n~---l~eLiqY~P~te-~v~~~P-LLIVPp~INK~YIlDL~P~~SlVr~lv~qG~~VflIsW~nP~~---~- 261 (560)
T TIGR01839 191 EGAVVFRNE---VLELIQYKPITE-QQHARP-LLVVPPQINKFYIFDLSPEKSFVQYCLKNQLQVFIISWRNPDK---A- 261 (560)
T ss_pred CCceeEECC---ceEEEEeCCCCC-CcCCCc-EEEechhhhhhheeecCCcchHHHHHHHcCCeEEEEeCCCCCh---h-
Confidence 334455543 256677777521 123345 6666663322111 122457899999999999999987322 1
Q ss_pred hhcCCCCCCcch-HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHH----HHHhCCC-ceeEEEecCCccchhhhc-
Q 003363 640 LQSLPGKVGSQD-VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH----LIGQAPD-KFVAAAARNPLCNLALMV- 712 (826)
Q Consensus 640 ~~~~~~~~~~~~-~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~----~a~~~p~-~~~a~v~~~p~~~~~~~~- 712 (826)
...++-.+ ++.+.++++.+.+. ...++|.++|+|+||.+++. +++++++ +++.+++....+|+..-.
T Consensus 262 ----~r~~~ldDYv~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatplDf~~~g~ 335 (560)
T TIGR01839 262 ----HREWGLSTYVDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLDSTMESP 335 (560)
T ss_pred ----hcCCCHHHHHHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeecccccCCCCc
Confidence 11222222 34667777777766 34678999999999999986 6777786 799998877766643100
Q ss_pred ------------------cCCCCCCc----------------hhh-hhc--cCcC----CccCC----CCC---ChhhHH
Q 003363 713 ------------------GTTDIPDW----------------CYV-ESY--GSKG----KDSFT----ESP---SVEDLT 744 (826)
Q Consensus 713 ------------------~~~~~~~~----------------~~~-~~~--~~~~----~~~~~----~~~---~~~~~~ 744 (826)
..-.++.+ .+. ..+ +... ...+. ..| ..+..+
T Consensus 336 l~~f~~e~~~~~~e~~~~~~G~lpg~~ma~~F~~LrP~dliw~y~v~~yllg~~p~~fdll~Wn~D~t~lPg~~~~e~l~ 415 (560)
T TIGR01839 336 AALFADEQTLEAAKRRSYQAGVLDGSEMAKVFAWMRPNDLIWNYWVNNYLLGNEPPAFDILYWNNDTTRLPAAFHGDLLD 415 (560)
T ss_pred chhccChHHHHHHHHHHHhcCCcCHHHHHHHHHhcCchhhhHHHHHHHhhcCCCcchhhHHHHhCcCccchHHHHHHHHH
Confidence 00000100 000 000 0000 00000 000 012222
Q ss_pred HHhhcCcc-----------cccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCC
Q 003363 745 RFHSKSPI-----------SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803 (826)
Q Consensus 745 ~~~~~sp~-----------~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~ 803 (826)
.|..+... -.+.+|++|+|++.|+.|.++|+..+..+.+.+.. +++++..+ +||.
T Consensus 416 ly~~N~L~~pG~l~v~G~~idL~~I~~Pvl~va~~~DHIvPw~s~~~~~~l~gs---~~~fvl~~-gGHI 481 (560)
T TIGR01839 416 MFKSNPLTRPDALEVCGTPIDLKKVKCDSFSVAGTNDHITPWDAVYRSALLLGG---KRRFVLSN-SGHI 481 (560)
T ss_pred HHhcCCCCCCCCEEECCEEechhcCCCCeEEEecCcCCcCCHHHHHHHHHHcCC---CeEEEecC-CCcc
Confidence 22222211 24678999999999999999999999988877643 58887775 4684
|
This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.5e-08 Score=87.01 Aligned_cols=186 Identities=17% Similarity=0.214 Sum_probs=115.8
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCC--CCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS--LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~--~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (826)
..-+||+.||.+....+..+...+..|+.+|+.|..+++.-. --.|+. -|..-...-....+.++..|.+. .
T Consensus 13 ~~~tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~r----kPp~~~~t~~~~~~~~~aql~~~--l 86 (213)
T COG3571 13 APVTILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAARRTGRR----KPPPGSGTLNPEYIVAIAQLRAG--L 86 (213)
T ss_pred CCEEEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhccccCC----CCcCccccCCHHHHHHHHHHHhc--c
Confidence 344688889987777777788888999999999999996421 111110 01111111123445555566555 5
Q ss_pred CCCcEEEEEecchHHHHHHHHHhCCCceeEEEec-CCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHh
Q 003363 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR-NPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 747 (826)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (826)
+..++.+-|+||||-++.+++....-.+.+.++. .|+.. -+ .|. ..
T Consensus 87 ~~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYPfhp------------------pG---------KPe-----~~- 133 (213)
T COG3571 87 AEGPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYPFHP------------------PG---------KPE-----QL- 133 (213)
T ss_pred cCCceeeccccccchHHHHHHHhhcCCcceEEEecCccCC------------------CC---------Ccc-----cc-
Confidence 5678999999999999998886533335555543 23211 01 111 11
Q ss_pred hcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCC---------CCHHHHHHHHH
Q 003363 748 SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP---------QSDFESFLNIG 818 (826)
Q Consensus 748 ~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~---------~~~~~~~~~i~ 818 (826)
-..++..+++|+||.||+.|++-..++...+ .| ..+++++++.++.|.+--. .......+.+.
T Consensus 134 ---Rt~HL~gl~tPtli~qGtrD~fGtr~~Va~y--~l---s~~iev~wl~~adHDLkp~k~vsgls~~~hL~~~A~~va 205 (213)
T COG3571 134 ---RTEHLTGLKTPTLITQGTRDEFGTRDEVAGY--AL---SDPIEVVWLEDADHDLKPRKLVSGLSTADHLKTLAEQVA 205 (213)
T ss_pred ---hhhhccCCCCCeEEeecccccccCHHHHHhh--hc---CCceEEEEeccCccccccccccccccHHHHHHHHHHHHH
Confidence 1246778999999999999998766554211 22 2469999999999976421 12223345566
Q ss_pred HHHHH
Q 003363 819 LWFKK 823 (826)
Q Consensus 819 ~w~~~ 823 (826)
.|..+
T Consensus 206 ~~~~~ 210 (213)
T COG3571 206 GWARR 210 (213)
T ss_pred HHHhh
Confidence 67654
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.8e-06 Score=86.21 Aligned_cols=286 Identities=16% Similarity=0.129 Sum_probs=154.5
Q ss_pred eeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCC-CCCCeEEEEe-cCCceeEEEecCCCcccc
Q 003363 126 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE-NESPIQFELW-SQSQLEKEFHVPQTVHGS 203 (826)
Q Consensus 126 ~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~-~~~~~~~~i~-~~~~~~~~~~~~~~~~g~ 203 (826)
.+.|+.+.+++..++...+. .-.+....+..+|+|+++.|+.+...+ .+.---|.++ ++|++..+-.....-+..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~---~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p 91 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ---LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP 91 (346)
T ss_pred CCceEEEEEeCcccccchhh---hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC
Confidence 44667777765554432221 111225688899999999997776552 2444456666 457666554432211100
Q ss_pred ccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccC-
Q 003363 204 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS- 282 (826)
Q Consensus 204 v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~- 282 (826)
-.++.++||+.|+.+.-.. ..|-|..+..
T Consensus 92 -------~yvsvd~~g~~vf~AnY~~-------------------------------------------g~v~v~p~~~d 121 (346)
T COG2706 92 -------CYVSVDEDGRFVFVANYHS-------------------------------------------GSVSVYPLQAD 121 (346)
T ss_pred -------eEEEECCCCCEEEEEEccC-------------------------------------------ceEEEEEcccC
Confidence 3678999998666542211 2233333311
Q ss_pred CceEec----c---CCCC----CCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhh
Q 003363 283 GEVQAV----K---GIPK----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (826)
Q Consensus 283 g~~~~l----~---~~~~----~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (826)
|.+..+ . ..+. ...+-...++||++. |+... - ..-.|+.+++
T Consensus 122 G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~----l~v~D-L-------------G~Dri~~y~~--------- 174 (346)
T COG2706 122 GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRY----LVVPD-L-------------GTDRIFLYDL--------- 174 (346)
T ss_pred CccccceeeeecCCCCCCccccCCccceeeeCCCCCE----EEEee-c-------------CCceEEEEEc---------
Confidence 322211 0 0000 112446789999995 54443 1 2226888888
Q ss_pred hhhhcCCCCCCcceecC----CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeee
Q 003363 352 LELKESSSEDLPVVNLT----ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 427 (826)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt----~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 427 (826)
+.|.....+ ......+...|.|+||. +|+-.+- +++-.+|.+|-..++. ..+.
T Consensus 175 --------~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~-aY~v~EL-------~stV~v~~y~~~~g~~-------~~lQ 231 (346)
T COG2706 175 --------DDGKLTPADPAEVKPGAGPRHIVFHPNGKY-AYLVNEL-------NSTVDVLEYNPAVGKF-------EELQ 231 (346)
T ss_pred --------ccCccccccccccCCCCCcceEEEcCCCcE-EEEEecc-------CCEEEEEEEcCCCceE-------EEee
Confidence 333322221 23344678899999995 4555443 2334455555333222 2222
Q ss_pred eeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC--CCC-eeeEEEeecCCEEEE
Q 003363 428 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA--ESN-FSWSLLTLDGDNIIA 504 (826)
Q Consensus 428 ~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~--~~~-~~~~~~s~dg~~l~~ 504 (826)
.+-..|. +|.|-. +...+..++||+.||.+........+|.||.++|++.-+... .+. ...-.++++|+.|++
T Consensus 232 ~i~tlP~--dF~g~~--~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Lia 307 (346)
T COG2706 232 TIDTLPE--DFTGTN--WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIA 307 (346)
T ss_pred eeccCcc--ccCCCC--ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEE
Confidence 3323333 354411 234567899999887665445666889999999987755332 221 222357778887777
Q ss_pred EEeCCCCCCeEEEEe
Q 003363 505 VSSSPVDVPQVKYGY 519 (826)
Q Consensus 505 ~~s~~~~p~~l~~~~ 519 (826)
.....+. -.+|.++
T Consensus 308 a~q~sd~-i~vf~~d 321 (346)
T COG2706 308 ANQKSDN-ITVFERD 321 (346)
T ss_pred EccCCCc-EEEEEEc
Confidence 7766666 3344444
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.9e-07 Score=87.68 Aligned_cols=268 Identities=13% Similarity=0.172 Sum_probs=145.9
Q ss_pred EEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCC
Q 003363 111 AMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQS 188 (826)
Q Consensus 111 v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~ 188 (826)
|++..+...+++++..+...++.+... .....+...+. ...+-...|+|-..-++++...+ . .+.+| ..+
T Consensus 26 v~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh---~~svdql~w~~~~~d~~atas~d-k---~ir~wd~r~~ 97 (313)
T KOG1407|consen 26 VAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGH---TDSVDQLCWDPKHPDLFATASGD-K---TIRIWDIRSG 97 (313)
T ss_pred EEEcccCceeeecccCCceEEEEecch-hhhhhhcccCC---CcchhhheeCCCCCcceEEecCC-c---eEEEEEeccC
Confidence 344444444455555555556555433 11112211211 12456678877776665554433 1 35556 345
Q ss_pred ceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCC
Q 003363 189 QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYA 268 (826)
Q Consensus 189 ~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~ 268 (826)
+....+....+- -.+.|||||+++++...+
T Consensus 98 k~~~~i~~~~en----------i~i~wsp~g~~~~~~~kd---------------------------------------- 127 (313)
T KOG1407|consen 98 KCTARIETKGEN----------INITWSPDGEYIAVGNKD---------------------------------------- 127 (313)
T ss_pred cEEEEeeccCcc----------eEEEEcCCCCEEEEecCc----------------------------------------
Confidence 555555443333 478999999999996432
Q ss_pred CccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccch
Q 003363 269 GKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 348 (826)
Q Consensus 269 ~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 348 (826)
..|-.+|..+-++..- ..-...+...+|.-++. +.|..+ ..+.+-++..+
T Consensus 128 ----D~it~id~r~~~~~~~--~~~~~e~ne~~w~~~nd-----~Fflt~--------------GlG~v~ILsyp----- 177 (313)
T KOG1407|consen 128 ----DRITFIDARTYKIVNE--EQFKFEVNEISWNNSND-----LFFLTN--------------GLGCVEILSYP----- 177 (313)
T ss_pred ----ccEEEEEecccceeeh--hcccceeeeeeecCCCC-----EEEEec--------------CCceEEEEecc-----
Confidence 4566677666554433 23334556778985555 777663 22344445442
Q ss_pred hhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeee
Q 003363 349 ASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 428 (826)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 428 (826)
.-..+..|..+...+....|+|||+++|..+.+. .+-+||++ +...+-
T Consensus 178 -----------sLkpv~si~AH~snCicI~f~p~GryfA~GsADA-----------lvSLWD~~--ELiC~R-------- 225 (313)
T KOG1407|consen 178 -----------SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADA-----------LVSLWDVD--ELICER-------- 225 (313)
T ss_pred -----------ccccccccccCCcceEEEEECCCCceEeeccccc-----------eeeccChh--Hhhhhe--------
Confidence 3344566777788889999999999999777653 23344432 221100
Q ss_pred eeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc-EEEecCCCCCeeeEEEeecCCEEEEEEe
Q 003363 429 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE-LLRITPAESNFSWSLLTLDGDNIIAVSS 507 (826)
Q Consensus 429 ~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~-~~~lt~~~~~~~~~~~s~dg~~l~~~~s 507 (826)
.|+- .+..+..++||.||++|. +++.+.-..|- ++.||. +..|...... ....|.|.-.-|+|.++
T Consensus 226 --------~isR-ldwpVRTlSFS~dg~~lA-SaSEDh~IDIA--~vetGd~~~eI~~~~~t-~tVAWHPk~~LLAyA~d 292 (313)
T KOG1407|consen 226 --------CISR-LDWPVRTLSFSHDGRMLA-SASEDHFIDIA--EVETGDRVWEIPCEGPT-FTVAWHPKRPLLAYACD 292 (313)
T ss_pred --------eecc-ccCceEEEEeccCcceee-ccCccceEEeE--ecccCCeEEEeeccCCc-eeEEecCCCceeeEEec
Confidence 0000 111356788999999664 43333333333 445665 3344333332 33567777666666665
Q ss_pred CCCC
Q 003363 508 SPVD 511 (826)
Q Consensus 508 ~~~~ 511 (826)
+.+.
T Consensus 293 dk~~ 296 (313)
T KOG1407|consen 293 DKDG 296 (313)
T ss_pred CCCC
Confidence 5443
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-07 Score=92.59 Aligned_cols=150 Identities=13% Similarity=0.122 Sum_probs=89.1
Q ss_pred cCCCCcceEEEEEeec-hhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003363 103 SGNGNGTQAMFSISQP-NLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (826)
Q Consensus 103 ~~s~dg~~v~~~~~~~-~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (826)
.|+++|..|++..... +-...++-...-++.++..+.....+.... .+.+...+|||+|+++|++...-.. .
T Consensus 12 ~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~----~~~I~~~~WsP~g~~favi~g~~~~---~ 84 (194)
T PF08662_consen 12 HWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKK----EGPIHDVAWSPNGNEFAVIYGSMPA---K 84 (194)
T ss_pred EecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccC----CCceEEEEECcCCCEEEEEEccCCc---c
Confidence 3789999999887732 312222222233333433333333332211 0238999999999999988642212 3
Q ss_pred EEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeec
Q 003363 182 FELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 261 (826)
Q Consensus 182 ~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (826)
..+++.. ...+..+.... ...+.|||+|+.|+......
T Consensus 85 v~lyd~~-~~~i~~~~~~~---------~n~i~wsP~G~~l~~~g~~n-------------------------------- 122 (194)
T PF08662_consen 85 VTLYDVK-GKKIFSFGTQP---------RNTISWSPDGRFLVLAGFGN-------------------------------- 122 (194)
T ss_pred cEEEcCc-ccEeEeecCCC---------ceEEEECCCCCEEEEEEccC--------------------------------
Confidence 4445321 33333333222 15789999999999975432
Q ss_pred CCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEe
Q 003363 262 DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 317 (826)
Q Consensus 262 d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~ 317 (826)
....|.+||....+.... ........+.|||||+. |+...
T Consensus 123 ---------~~G~l~~wd~~~~~~i~~---~~~~~~t~~~WsPdGr~----~~ta~ 162 (194)
T PF08662_consen 123 ---------LNGDLEFWDVRKKKKIST---FEHSDATDVEWSPDGRY----LATAT 162 (194)
T ss_pred ---------CCcEEEEEECCCCEEeec---cccCcEEEEEEcCCCCE----EEEEE
Confidence 236799999986554332 33345678999999998 87765
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.6e-07 Score=100.24 Aligned_cols=211 Identities=14% Similarity=0.106 Sum_probs=121.2
Q ss_pred cccEEEEeCC-CCCeEEEEecCCCCCCeEEEEec---CCce----eEEEecCCCccccccCCCcccceeecCCCC-eEEE
Q 003363 154 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWS---QSQL----EKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAY 224 (826)
Q Consensus 154 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~i~~---~~~~----~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~-~ia~ 224 (826)
+.+...+||| |++.||..+.++ .+.+|+ ++.. ..+..+ .+..+.| ..+.|+|++. .|+.
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~Dg-----tIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V------~~l~f~P~~~~iLaS 143 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDG-----TIMGWGIPEEGLTQNISDPIVHL-QGHTKKV------GIVSFHPSAMNVLAS 143 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCC-----EEEEEecCCCccccccCcceEEe-cCCCCcE------EEEEeCcCCCCEEEE
Confidence 4588999999 888888765543 455662 2211 111111 1222333 7899999975 4544
Q ss_pred EeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEee
Q 003363 225 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP 304 (826)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSP 304 (826)
.+. +..|.+||+.+++..... ......+..++|+|
T Consensus 144 gs~--------------------------------------------DgtVrIWDl~tg~~~~~l-~~h~~~V~sla~sp 178 (493)
T PTZ00421 144 AGA--------------------------------------------DMVVNVWDVERGKAVEVI-KCHSDQITSLEWNL 178 (493)
T ss_pred EeC--------------------------------------------CCEEEEEECCCCeEEEEE-cCCCCceEEEEEEC
Confidence 332 257999999988754431 22334578899999
Q ss_pred CCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCcc-ccCceecCC
Q 003363 305 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISS-AFFPRFSPD 382 (826)
Q Consensus 305 Dg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~-~~~p~~SpD 382 (826)
||+. |+..+ .+..|.++|+ .++. ...+..+.+. .....|+++
T Consensus 179 dG~l----Latgs---------------~Dg~IrIwD~-----------------rsg~~v~tl~~H~~~~~~~~~w~~~ 222 (493)
T PTZ00421 179 DGSL----LCTTS---------------KDKKLNIIDP-----------------RDGTIVSSVEAHASAKSQRCLWAKR 222 (493)
T ss_pred CCCE----EEEec---------------CCCEEEEEEC-----------------CCCcEEEEEecCCCCcceEEEEcCC
Confidence 9997 66655 3347888897 3333 3444444332 345789999
Q ss_pred CCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEE
Q 003363 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 462 (826)
Q Consensus 383 G~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~ 462 (826)
+..|+...... .....|.+||+........+...+ . ......+.|++|++.|+..+
T Consensus 223 ~~~ivt~G~s~-------s~Dr~VklWDlr~~~~p~~~~~~d---------~--------~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 223 KDLIITLGCSK-------SQQRQIMLWDTRKMASPYSTVDLD---------Q--------SSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred CCeEEEEecCC-------CCCCeEEEEeCCCCCCceeEeccC---------C--------CCceEEEEEcCCCCEEEEEE
Confidence 88876554321 123579999986533211000000 0 00122346889998776654
Q ss_pred EeCCeEEEEEEECCCCcEEEe
Q 003363 463 IWGSSQVIISVNVSSGELLRI 483 (826)
Q Consensus 463 ~~~~~~~l~~vdl~tg~~~~l 483 (826)
..++ .|..+|+.+++....
T Consensus 279 kgDg--~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 279 KGEG--NIRCFELMNERLTFC 297 (493)
T ss_pred eCCC--eEEEEEeeCCceEEE
Confidence 3334 455556666665443
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.8e-07 Score=88.63 Aligned_cols=252 Identities=12% Similarity=0.071 Sum_probs=136.6
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecC-CCccccccCCCcccceeecCCCCeEEEEeecCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~ 230 (826)
..+....||+||..|+..++.+ .++++ ..+...+.+... -++ .-+.|-.....+.+.+....
T Consensus 15 ~~i~sl~fs~~G~~litss~dD-----sl~LYd~~~g~~~~ti~skkyG~----------~~~~Fth~~~~~i~sStk~d 79 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDD-----SLRLYDSLSGKQVKTINSKKYGV----------DLACFTHHSNTVIHSSTKED 79 (311)
T ss_pred CceeEEEecCCCCEEEEecCCC-----eEEEEEcCCCceeeEeecccccc----------cEEEEecCCceEEEccCCCC
Confidence 3478899999999998865543 23344 344444444432 233 46667777777777766333
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003363 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
....+......+-.....+|..-+......|--..-+++..+..|.+||+...+.+-+. .. ....-.+|.|+|-.
T Consensus 80 ~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l--~~-~~~pi~AfDp~GLi-- 154 (311)
T KOG1446|consen 80 DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL--NL-SGRPIAAFDPEGLI-- 154 (311)
T ss_pred CceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE--ec-CCCcceeECCCCcE--
Confidence 22222222222223334444444444444554222334445678999999877665542 11 12234578887763
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcce--ecC-CCCccccCceecCCCCEEE
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV--NLT-ESISSAFFPRFSPDGKFLV 387 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~Lt-~~~~~~~~p~~SpDG~~l~ 387 (826)
++... ....|.++|+..- +.|.-+ .++ ..........||||||.|+
T Consensus 155 --fA~~~---------------~~~~IkLyD~Rs~--------------dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iL 203 (311)
T KOG1446|consen 155 --FALAN---------------GSELIKLYDLRSF--------------DKGPFTTFSITDNDEAEWTDLEFSPDGKSIL 203 (311)
T ss_pred --EEEec---------------CCCeEEEEEeccc--------------CCCCceeEccCCCCccceeeeEEcCCCCEEE
Confidence 32222 1125667776321 223322 233 2233467789999999998
Q ss_pred EEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCe
Q 003363 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 467 (826)
Q Consensus 388 f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 467 (826)
...+. ..++++|.-+|..+.- +-..+....++ ...+|+|||+.| +....+++
T Consensus 204 lsT~~-----------s~~~~lDAf~G~~~~t---------fs~~~~~~~~~-------~~a~ftPds~Fv-l~gs~dg~ 255 (311)
T KOG1446|consen 204 LSTNA-----------SFIYLLDAFDGTVKST---------FSGYPNAGNLP-------LSATFTPDSKFV-LSGSDDGT 255 (311)
T ss_pred EEeCC-----------CcEEEEEccCCcEeee---------EeeccCCCCcc-------eeEEECCCCcEE-EEecCCCc
Confidence 66644 3588898777653210 00111112222 367899999855 55444454
Q ss_pred EEEEEEECCCCcEEEecCC
Q 003363 468 QVIISVNVSSGELLRITPA 486 (826)
Q Consensus 468 ~~l~~vdl~tg~~~~lt~~ 486 (826)
. ..+++++|+....+.+
T Consensus 256 i--~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 256 I--HVWNLETGKKVAVLRG 272 (311)
T ss_pred E--EEEEcCCCcEeeEecC
Confidence 4 4456677776554444
|
|
| >KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.9e-08 Score=99.16 Aligned_cols=224 Identities=18% Similarity=0.184 Sum_probs=131.6
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHH-HCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcC
Q 003363 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 666 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la-~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 666 (826)
.-.+.|.++++||--++ ...|......|+ ..|-.|+.+|.|. +|.+..-.. .......+|+...++......
T Consensus 48 ~~~~~Pp~i~lHGl~GS--~~Nw~sv~k~Ls~~l~~~v~~vd~Rn---HG~Sp~~~~--h~~~~ma~dv~~Fi~~v~~~~ 120 (315)
T KOG2382|consen 48 NLERAPPAIILHGLLGS--KENWRSVAKNLSRKLGRDVYAVDVRN---HGSSPKITV--HNYEAMAEDVKLFIDGVGGST 120 (315)
T ss_pred ccCCCCceEEecccccC--CCCHHHHHHHhcccccCceEEEeccc---CCCCccccc--cCHHHHHHHHHHHHHHccccc
Confidence 34678999999995544 356777777775 4567899999998 444322111 113334566666666654332
Q ss_pred CCCCCcEEEEEecchH-HHHHHHHHhCCCceeEEEec--CCc-cch---------hhhccCC-C---CCCch-----hhh
Q 003363 667 LANPSKVTVVGGSHGG-FLTTHLIGQAPDKFVAAAAR--NPL-CNL---------ALMVGTT-D---IPDWC-----YVE 724 (826)
Q Consensus 667 ~~d~~rv~l~G~S~GG-~~a~~~a~~~p~~~~a~v~~--~p~-~~~---------~~~~~~~-~---~~~~~-----~~~ 724 (826)
-..++.|+|||||| .+++..+...|+.+..+++. +|. +.. ..+.... . .+... +.+
T Consensus 121 --~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rke~~~~l~~ 198 (315)
T KOG2382|consen 121 --RLDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRKEALKSLIE 198 (315)
T ss_pred --ccCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHHHHHHHHHH
Confidence 23579999999999 66677777888877665543 331 110 0000000 0 00000 000
Q ss_pred -------------hcc-CcCCccCCCCCCh----hhHHHHhhcCccccc--CCCCCcEEEEEeCCCCCCCcHHHHHHHHH
Q 003363 725 -------------SYG-SKGKDSFTESPSV----EDLTRFHSKSPISHI--SKVKTPTIFLLGAQDLRVPVSNGLQYARA 784 (826)
Q Consensus 725 -------------~~~-~~~~~~~~~~~~~----~~~~~~~~~sp~~~~--~~i~~PvLii~G~~D~~vp~~~~~~~~~~ 784 (826)
.+. ......+.+.-.. +....+...+.-..+ .....|+|+++|.++..++.++-.++.+.
T Consensus 199 ~~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~~~~~pvlfi~g~~S~fv~~~~~~~~~~~ 278 (315)
T KOG2382|consen 199 VGFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDGPYTGPVLFIKGLQSKFVPDEHYPRMEKI 278 (315)
T ss_pred HhcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccccccccceeEEecCCCCCcChhHHHHHHHh
Confidence 000 0000001111111 111122122222223 44568999999999999999888777777
Q ss_pred HHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 785 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 785 l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
+.. ++++.++++||+...+... ++.+.|.+|+.++.
T Consensus 279 fp~----~e~~~ld~aGHwVh~E~P~-~~~~~i~~Fl~~~~ 314 (315)
T KOG2382|consen 279 FPN----VEVHELDEAGHWVHLEKPE-EFIESISEFLEEPE 314 (315)
T ss_pred ccc----hheeecccCCceeecCCHH-HHHHHHHHHhcccC
Confidence 765 8999999999998766554 88899999887754
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.5e-07 Score=102.43 Aligned_cols=199 Identities=13% Similarity=0.090 Sum_probs=117.4
Q ss_pred cceeecC-CCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc-----
Q 003363 211 EGISWNS-DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE----- 284 (826)
Q Consensus 211 ~~~~wSP-Dg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~----- 284 (826)
..+.|+| |++.||..+.+ ..|.+||+.++.
T Consensus 79 ~~v~fsP~d~~~LaSgS~D--------------------------------------------gtIkIWdi~~~~~~~~~ 114 (493)
T PTZ00421 79 IDVAFNPFDPQKLFTASED--------------------------------------------GTIMGWGIPEEGLTQNI 114 (493)
T ss_pred EEEEEcCCCCCEEEEEeCC--------------------------------------------CEEEEEecCCCcccccc
Confidence 8999999 88888876554 467788876542
Q ss_pred ---eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCC
Q 003363 285 ---VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 361 (826)
Q Consensus 285 ---~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 361 (826)
+..+ ......+..+.|+|++.. ++.++. .+..|.++|+ .+
T Consensus 115 ~~~l~~L--~gH~~~V~~l~f~P~~~~----iLaSgs--------------~DgtVrIWDl-----------------~t 157 (493)
T PTZ00421 115 SDPIVHL--QGHTKKVGIVSFHPSAMN----VLASAG--------------ADMVVNVWDV-----------------ER 157 (493)
T ss_pred CcceEEe--cCCCCcEEEEEeCcCCCC----EEEEEe--------------CCCEEEEEEC-----------------CC
Confidence 2233 223346778999999865 655541 2336888898 44
Q ss_pred Cc-ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcc
Q 003363 362 LP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 440 (826)
Q Consensus 362 ~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g 440 (826)
++ ...+..+...+....|+|||+.|+..+.+ ..|.+||+.++.... .+ .... .
T Consensus 158 g~~~~~l~~h~~~V~sla~spdG~lLatgs~D-----------g~IrIwD~rsg~~v~---------tl-~~H~-~---- 211 (493)
T PTZ00421 158 GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD-----------KKLNIIDPRDGTIVS---------SV-EAHA-S---- 211 (493)
T ss_pred CeEEEEEcCCCCceEEEEEECCCCEEEEecCC-----------CEEEEEECCCCcEEE---------EE-ecCC-C----
Confidence 43 34555566678899999999988765543 458999987754311 00 0000 0
Q ss_pred cccCCCCCCccccCCCEEEEEEEe-CCeEEEEEEECCCCc-EEE-ecCCC-CCeeeEEEeecCCEEEEEEeCCCCCCeEE
Q 003363 441 LYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGE-LLR-ITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVK 516 (826)
Q Consensus 441 ~~~~~~~~~~ws~Dg~~l~~~~~~-~~~~~l~~vdl~tg~-~~~-lt~~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~ 516 (826)
.......|.+++..|+..... ..+..+..+|+.+.. ... +..+. .......++++++.++....+.. .|.
T Consensus 212 ---~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg---~Ir 285 (493)
T PTZ00421 212 ---AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG---NIR 285 (493)
T ss_pred ---CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC---eEE
Confidence 011245688888766543322 234566667776533 222 21111 12334567888886665543332 366
Q ss_pred EEeecc
Q 003363 517 YGYFVD 522 (826)
Q Consensus 517 ~~~~~~ 522 (826)
+.++..
T Consensus 286 iwdl~~ 291 (493)
T PTZ00421 286 CFELMN 291 (493)
T ss_pred EEEeeC
Confidence 666644
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3e-08 Score=100.81 Aligned_cols=280 Identities=12% Similarity=0.024 Sum_probs=153.4
Q ss_pred EEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCC
Q 003363 100 TFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESP 179 (826)
Q Consensus 100 ~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~ 179 (826)
-|-+.|++|+++|-.+.. ....+|...-+..-.-...|.... ..+....||||.++|+-....+
T Consensus 228 Wfl~FS~nGkyLAsaSkD-------~Taiiw~v~~d~~~kl~~tlvgh~-----~~V~yi~wSPDdryLlaCg~~e---- 291 (519)
T KOG0293|consen 228 WFLQFSHNGKYLASASKD-------STAIIWIVVYDVHFKLKKTLVGHS-----QPVSYIMWSPDDRYLLACGFDE---- 291 (519)
T ss_pred EEEEEcCCCeeEeeccCC-------ceEEEEEEecCcceeeeeeeeccc-----CceEEEEECCCCCeEEecCchH----
Confidence 355679999988765322 234556544222100012222222 4599999999999998875544
Q ss_pred eEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCC-CCCc
Q 003363 180 IQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNS-WKGQ 256 (826)
Q Consensus 180 ~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 256 (826)
...+| ..|..+.... .+...++ .+..|-|||.+++..+.+..-- .|+.. +.....+.+... -...
T Consensus 292 -~~~lwDv~tgd~~~~y~--~~~~~S~------~sc~W~pDg~~~V~Gs~dr~i~--~wdlD-gn~~~~W~gvr~~~v~d 359 (519)
T KOG0293|consen 292 -VLSLWDVDTGDLRHLYP--SGLGFSV------SSCAWCPDGFRFVTGSPDRTII--MWDLD-GNILGNWEGVRDPKVHD 359 (519)
T ss_pred -heeeccCCcchhhhhcc--cCcCCCc------ceeEEccCCceeEecCCCCcEE--EecCC-cchhhcccccccceeEE
Confidence 45667 3444443332 2211122 6889999999988776554322 12211 111111211111 0112
Q ss_pred ceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCc
Q 003363 257 GDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 336 (826)
Q Consensus 257 ~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~ 336 (826)
.+...|+...+.......|.+++.++..-+.+ +..+..+.+++.|-||+. +...- .+..
T Consensus 360 lait~Dgk~vl~v~~d~~i~l~~~e~~~dr~l--ise~~~its~~iS~d~k~----~LvnL---------------~~qe 418 (519)
T KOG0293|consen 360 LAITYDGKYVLLVTVDKKIRLYNREARVDRGL--ISEEQPITSFSISKDGKL----ALVNL---------------QDQE 418 (519)
T ss_pred EEEcCCCcEEEEEecccceeeechhhhhhhcc--ccccCceeEEEEcCCCcE----EEEEc---------------ccCe
Confidence 33444533333333556777788776655545 556667889999999995 33322 2237
Q ss_pred eEEEEcccccchhhhhhhhcCCCCCCcceecCCCCcc--ccCceec-CCCCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 337 LYAVRVSLYKSEASELELKESSSEDLPVVNLTESISS--AFFPRFS-PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 337 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~--~~~p~~S-pDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
|..+|+. +...+++-.++... +-.-.|- .|.+.|+-.|. ..++|+|+..+
T Consensus 419 i~LWDl~----------------e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE-----------D~kvyIWhr~s 471 (519)
T KOG0293|consen 419 IHLWDLE----------------ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSE-----------DSKVYIWHRIS 471 (519)
T ss_pred eEEeecc----------------hhhHHHHhhcccccceEEEeccCCCCcceEEecCC-----------CceEEEEEccC
Confidence 8888882 22223333333211 1112222 23334433332 25799999888
Q ss_pred CCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003363 414 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (826)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vd 474 (826)
+.......+... .+.-++|.|-...++.++..+++.+||...
T Consensus 472 gkll~~LsGHs~-------------------~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 472 GKLLAVLSGHSK-------------------TVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CceeEeecCCcc-------------------eeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 776543333221 234568999888888888888888888754
|
|
| >COG2272 PnbA Carboxylesterase type B [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5e-09 Score=111.50 Aligned_cols=128 Identities=23% Similarity=0.225 Sum_probs=90.9
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cchHHHHHHHHCC-cEEEEECCCCCCCCchhhhhcC---CCCCCcc
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVG-YSLLIVNYRGSLGFGEEALQSL---PGKVGSQ 650 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~~~~~~~la~~G-~~Vl~~d~rG~~g~G~~~~~~~---~~~~~~~ 650 (826)
+...++.|. .+.++.|+|||||||.+..+.. .....-+.|+++| ++|+.+|||... +|--....+ .......
T Consensus 80 L~LNIwaP~--~~a~~~PVmV~IHGG~y~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~-lGfL~~~~~~~~~~~~~n~ 156 (491)
T COG2272 80 LYLNIWAPE--VPAEKLPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGA-LGFLDLSSLDTEDAFASNL 156 (491)
T ss_pred eeEEeeccC--CCCCCCcEEEEEeccccccCCCcccccChHHHHhcCCEEEEEeCccccc-ceeeehhhccccccccccc
Confidence 555688887 3567789999999988765443 2223456888888 999999999532 221111111 1111123
Q ss_pred hHHHHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHhCCC---ceeEEEecCCccc
Q 003363 651 DVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCN 707 (826)
Q Consensus 651 ~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~p~~~ 707 (826)
.+.|++.+++|+.++ ..-|++.|.|+|+|.||+.++.+++. |. +|+.+|+.+|.+.
T Consensus 157 Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 157 GLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHRAIALSGAAS 218 (491)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcC-ccchHHHHHHHHhCCCCC
Confidence 588999999999886 34799999999999999999888764 53 7888888887653
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-08 Score=97.74 Aligned_cols=245 Identities=14% Similarity=0.165 Sum_probs=151.7
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
-+....|||||++|+..+-++ .+++| ..|+.++-..- +......+-|....++.||-|...||..+.
T Consensus 215 h~EcA~FSPDgqyLvsgSvDG-----FiEVWny~~GKlrKDLkY-QAqd~fMMmd~aVlci~FSRDsEMlAsGsq----- 283 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDG-----FIEVWNYTTGKLRKDLKY-QAQDNFMMMDDAVLCISFSRDSEMLASGSQ----- 283 (508)
T ss_pred chhheeeCCCCceEeeccccc-----eeeeehhccchhhhhhhh-hhhcceeecccceEEEeecccHHHhhccCc-----
Confidence 366789999999998765543 88999 46666553321 111122233444578999999998887543
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCce-EeccCCCCCCccceEEEeeCCCCCcc
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~-~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
+..|.||.+.+|.. ++.. ....-++..+.||-|+..
T Consensus 284 ---------------------------------------DGkIKvWri~tG~ClRrFd-rAHtkGvt~l~FSrD~Sq--- 320 (508)
T KOG0275|consen 284 ---------------------------------------DGKIKVWRIETGQCLRRFD-RAHTKGVTCLSFSRDNSQ--- 320 (508)
T ss_pred ---------------------------------------CCcEEEEEEecchHHHHhh-hhhccCeeEEEEccCcch---
Confidence 35688999988874 3332 344557889999999999
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEe
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLS 390 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s 390 (826)
|...+.+. .+.+--+ .+|+ .+....+...+....|++||.+|+-.+
T Consensus 321 -iLS~sfD~---------------tvRiHGl-----------------KSGK~LKEfrGHsSyvn~a~ft~dG~~iisaS 367 (508)
T KOG0275|consen 321 -ILSASFDQ---------------TVRIHGL-----------------KSGKCLKEFRGHSSYVNEATFTDDGHHIISAS 367 (508)
T ss_pred -hhcccccc---------------eEEEecc-----------------ccchhHHHhcCccccccceEEcCCCCeEEEec
Confidence 88776322 2323333 3443 455566677788999999999998777
Q ss_pred ccCCCCCCCCcccceEEEEeCCCCCCCCc--ccceeeeeeeeeccCCCCCcccccCCCCCCcccc-CCCEEEEEEEeCCe
Q 003363 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSS--LEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS-DGCTMLLSSIWGSS 467 (826)
Q Consensus 391 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~-Dg~~l~~~~~~~~~ 467 (826)
.+ ..+.+|+..+++-... ..+.+- .+.++...| +-..+++. ...
T Consensus 368 sD-----------gtvkvW~~KtteC~~Tfk~~~~d~-------------------~vnsv~~~PKnpeh~iVC---Nrs 414 (508)
T KOG0275|consen 368 SD-----------GTVKVWHGKTTECLSTFKPLGTDY-------------------PVNSVILLPKNPEHFIVC---NRS 414 (508)
T ss_pred CC-----------ccEEEecCcchhhhhhccCCCCcc-------------------cceeEEEcCCCCceEEEE---cCC
Confidence 66 3477888776543211 111100 111222222 22234332 334
Q ss_pred EEEEEEECCCCcEEEecCCC---CCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 468 QVIISVNVSSGELLRITPAE---SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 468 ~~l~~vdl~tg~~~~lt~~~---~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
..+|.+++.+.-++..+.+. +++-...+||.|.++|++..+. .+|.....++
T Consensus 415 ntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~----vlYCF~~~sG 469 (508)
T KOG0275|consen 415 NTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDG----VLYCFSVLSG 469 (508)
T ss_pred CeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCc----EEEEEEeecC
Confidence 56888998655555555443 3555567899999999988763 3565554444
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-07 Score=107.53 Aligned_cols=178 Identities=12% Similarity=0.086 Sum_probs=112.0
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (826)
..++.||||++|||+....... .....+||+++. +++.+++
T Consensus 353 sspaiSpdG~~vA~v~~~~~~~------------------------------------~d~~s~Lwv~~~-gg~~~~l-- 393 (591)
T PRK13616 353 TSAALSRSGRQVAAVVTLGRGA------------------------------------PDPASSLWVGPL-GGVAVQV-- 393 (591)
T ss_pred ccceECCCCCEEEEEEeecCCC------------------------------------CCcceEEEEEeC-CCcceee--
Confidence 7899999999999997532100 013468999997 5555777
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC
Q 003363 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 370 (826)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 370 (826)
+.+. ....+.|||||+. |+|+.+... ............||.+++ ++++.++ ..
T Consensus 394 t~g~-~~t~PsWspDG~~----lw~v~dg~~---~~~v~~~~~~gql~~~~v-----------------d~ge~~~--~~ 446 (591)
T PRK13616 394 LEGH-SLTRPSWSLDADA----VWVVVDGNT---VVRVIRDPATGQLARTPV-----------------DASAVAS--RV 446 (591)
T ss_pred ecCC-CCCCceECCCCCc----eEEEecCcc---eEEEeccCCCceEEEEec-----------------cCchhhh--cc
Confidence 4444 3778999999999 999874321 111111223457888887 6666655 33
Q ss_pred CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEE---EeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCC
Q 003363 371 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR---IDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 447 (826)
Q Consensus 371 ~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~ 447 (826)
.+.+..++|||||++|+|+.. .+|++ ..-..| ...++.- ..+.. . ......
T Consensus 447 ~g~Issl~wSpDG~RiA~i~~------------g~v~Va~Vvr~~~G-~~~l~~~-~~l~~---~---------l~~~~~ 500 (591)
T PRK13616 447 PGPISELQLSRDGVRAAMIIG------------GKVYLAVVEQTEDG-QYALTNP-REVGP---G---------LGDTAV 500 (591)
T ss_pred CCCcCeEEECCCCCEEEEEEC------------CEEEEEEEEeCCCC-ceeeccc-EEeec---c---------cCCccc
Confidence 456899999999999999882 24666 332333 3333211 11111 0 001234
Q ss_pred CCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEE
Q 003363 448 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 482 (826)
Q Consensus 448 ~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~ 482 (826)
.+.|..|++ |++.. ..+...+|.+++++...+.
T Consensus 501 ~l~W~~~~~-L~V~~-~~~~~~v~~v~vDG~~~~~ 533 (591)
T PRK13616 501 SLDWRTGDS-LVVGR-SDPEHPVWYVNLDGSNSDA 533 (591)
T ss_pred cceEecCCE-EEEEe-cCCCCceEEEecCCccccc
Confidence 678999997 55443 3566778999998665544
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-07 Score=97.93 Aligned_cols=246 Identities=14% Similarity=0.175 Sum_probs=146.2
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003363 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (826)
Q Consensus 105 s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (826)
.|+|+.++|+.+ .+++++.|++.+. +..++. .+...+-........||||++||+....+ .|.++
T Consensus 266 ~p~G~~~i~~s~--------rrky~ysyDle~a--k~~k~~-~~~g~e~~~~e~FeVShd~~fia~~G~~G----~I~lL 330 (514)
T KOG2055|consen 266 APNGHSVIFTSG--------RRKYLYSYDLETA--KVTKLK-PPYGVEEKSMERFEVSHDSNFIAIAGNNG----HIHLL 330 (514)
T ss_pred cCCCceEEEecc--------cceEEEEeecccc--cccccc-CCCCcccchhheeEecCCCCeEEEcccCc----eEEee
Confidence 589997777643 4678999988443 222221 11111113466788899999999875443 45555
Q ss_pred e-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCC
Q 003363 185 W-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW 263 (826)
Q Consensus 185 ~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 263 (826)
- ..++..-.+ ...|.| .++.||.||+.|+....
T Consensus 331 hakT~eli~s~----KieG~v------~~~~fsSdsk~l~~~~~------------------------------------ 364 (514)
T KOG2055|consen 331 HAKTKELITSF----KIEGVV------SDFTFSSDSKELLASGG------------------------------------ 364 (514)
T ss_pred hhhhhhhhhee----eeccEE------eeEEEecCCcEEEEEcC------------------------------------
Confidence 5 344433333 333444 89999999988876532
Q ss_pred CccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcc
Q 003363 264 GETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVS 343 (826)
Q Consensus 264 g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 343 (826)
..++|+||+....+...---.+.++..+.+-|++|.+ ++..+.. |+. +||-.+-.
T Consensus 365 --------~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~y----lA~GS~~------GiV-------NIYd~~s~ 419 (514)
T KOG2055|consen 365 --------TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSY----LATGSDS------GIV-------NIYDGNSC 419 (514)
T ss_pred --------CceEEEEecCCcceEEEEeecCccceeeeeecCCCce----EEeccCc------ceE-------EEeccchh
Confidence 3589999998776544311344556778899999998 8776632 221 45544322
Q ss_pred cccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccce
Q 003363 344 LYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 423 (826)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 423 (826)
..+ .....+.++..-...+.+..|+||++.|+..|... .+.|.++.+++-..-
T Consensus 420 ~~s------------~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~---------knalrLVHvPS~TVF------ 472 (514)
T KOG2055|consen 420 FAS------------TNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK---------KNALRLVHVPSCTVF------ 472 (514)
T ss_pred hcc------------CCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc---------ccceEEEeccceeee------
Confidence 100 01122233333334578899999999998887653 356777777763221
Q ss_pred eeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003363 424 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (826)
Q Consensus 424 ~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vd 474 (826)
.=|.... . --..+..++|||.|.++.+. ...++..||.+.
T Consensus 473 ----sNfP~~n-~-----~vg~vtc~aFSP~sG~lAvG-Ne~grv~l~kL~ 512 (514)
T KOG2055|consen 473 ----SNFPTSN-T-----KVGHVTCMAFSPNSGYLAVG-NEAGRVHLFKLH 512 (514)
T ss_pred ----ccCCCCC-C-----cccceEEEEecCCCceEEee-cCCCceeeEeec
Confidence 0000000 0 00123467899999866554 556788888763
|
|
| >KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.9e-08 Score=104.33 Aligned_cols=230 Identities=18% Similarity=0.256 Sum_probs=144.8
Q ss_pred CCCcEEEEEcCCCCCCCCc---cch-HHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCC--------CCCcchHHHHHH
Q 003363 590 SCDPLIVVLHGGPHSVSLS---SYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG--------KVGSQDVNDVLT 657 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~---~~~-~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~--------~~~~~~~~D~~~ 657 (826)
+++|+|++.||--.++... ... ..+-.|+++||.|..-|.|| ..|++.-..-.+. .+.+....|+-+
T Consensus 71 ~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RG-n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA 149 (403)
T KOG2624|consen 71 KKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRG-NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPA 149 (403)
T ss_pred CCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcC-cccchhhcccCCcCCcceeecchhhhhhcCHHH
Confidence 8899999999954433221 111 23446799999999999999 4455543221111 122334679999
Q ss_pred HHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC---ceeEEEecCCccchh---------------------hhcc
Q 003363 658 AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLA---------------------LMVG 713 (826)
Q Consensus 658 ~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~p~~~~~---------------------~~~~ 713 (826)
.|+++++.. ..+++..+|||.|+...+.++...|+ +++.+++.+|+.-+. .+++
T Consensus 150 ~IdyIL~~T--~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aLAP~~~~k~~~~~~~~~~~~~~~~~~~~~~~fg 227 (403)
T KOG2624|consen 150 MIDYILEKT--GQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAPAAFPKHIKSLLNKFLDPFLGAFSLLPLLFG 227 (403)
T ss_pred HHHHHHHhc--cccceEEEEEEccchhheehhcccchhhhhhheeeeecchhhhcccccHHHHhhhhhhhhhhHHHHhcC
Confidence 999999873 46899999999999999888887765 688899999976332 0000
Q ss_pred CCCC-CC-c---------hh-------------hhhccCc-----------------------------------CCccC
Q 003363 714 TTDI-PD-W---------CY-------------VESYGSK-----------------------------------GKDSF 734 (826)
Q Consensus 714 ~~~~-~~-~---------~~-------------~~~~~~~-----------------------------------~~~~~ 734 (826)
.... +. + |. ....|.+ ..+.|
T Consensus 228 ~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~~G~~~~~~n~~~~~~~~~h~pagtSvk~~~H~~Q~~~s~~f~~y 307 (403)
T KOG2624|consen 228 RKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLLVGWNSNNWNTTLLPVYLAHLPAGTSVKNIVHWAQIVRSGKFRKY 307 (403)
T ss_pred CccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHcCcchHhhhhcccchhhccCCCCccHHHHHHHHHHhcCCCcccc
Confidence 0000 00 0 00 0000000 00001
Q ss_pred CCCCChhhHHHHhh-cCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCC--CCCCCCHH
Q 003363 735 TESPSVEDLTRFHS-KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG--IERPQSDF 811 (826)
Q Consensus 735 ~~~~~~~~~~~~~~-~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~--~~~~~~~~ 811 (826)
..... .+...|.. ..|...+.++++|+.+..|..|..+.+++...+...+.+... ...+.+++-.|. +.......
T Consensus 308 D~G~~-~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D~l~~~~DV~~~~~~~~~~~~-~~~~~~~~ynHlDFi~g~da~~ 385 (403)
T KOG2624|consen 308 DYGSK-RNLKHYGQSTPPEYDLTNIKVPTALYYGDNDWLADPEDVLILLLVLPNSVI-KYIVPIPEYNHLDFIWGLDAKE 385 (403)
T ss_pred CCCcc-ccHhhcCCCCCCCCCccccccCEEEEecCCcccCCHHHHHHHHHhcccccc-cccccCCCccceeeeeccCcHH
Confidence 11110 12222222 344566888999999999999999999999988888776544 333337888885 33455567
Q ss_pred HHHHHHHHHHHHH
Q 003363 812 ESFLNIGLWFKKY 824 (826)
Q Consensus 812 ~~~~~i~~w~~~~ 824 (826)
+++..|++.+++.
T Consensus 386 ~vy~~vi~~~~~~ 398 (403)
T KOG2624|consen 386 EVYDPVIERLRLF 398 (403)
T ss_pred HHHHHHHHHHHhh
Confidence 8899999888764
|
|
| >PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.6e-08 Score=101.41 Aligned_cols=207 Identities=16% Similarity=0.232 Sum_probs=120.4
Q ss_pred EEEEe-cCCCCCCCCCcEEEEEcCCCCCCCCccch--HH--HHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchH
Q 003363 578 AIFVS-SSHKKDCSCDPLIVVLHGGPHSVSLSSYS--KS--LAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652 (826)
Q Consensus 578 ~~~~~-P~~~~~~~~~P~vv~~HGg~~~~~~~~~~--~~--~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~ 652 (826)
.|++. |..++ .+..|+|||+|||++........ .. +..+.. ..++++.||.....- ..+...+..+
T Consensus 108 ~Wlvk~P~~~~-pk~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~-~~SILvLDYsLt~~~-------~~~~~yPtQL 178 (374)
T PF10340_consen 108 YWLVKAPNRFK-PKSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP-EVSILVLDYSLTSSD-------EHGHKYPTQL 178 (374)
T ss_pred EEEEeCCcccC-CCCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC-CCeEEEEeccccccc-------cCCCcCchHH
Confidence 47776 65432 33459999999998765332111 11 111222 569999999875400 0123344568
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhC--C---CceeEEEecCCccchhhhccC----------CCC
Q 003363 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--P---DKFVAAAARNPLCNLALMVGT----------TDI 717 (826)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~--p---~~~~a~v~~~p~~~~~~~~~~----------~~~ 717 (826)
.++.+..++|.+.. ..+.|.|+|-|+||.+++.++... + ...+.+|+++|++++...... .|.
T Consensus 179 ~qlv~~Y~~Lv~~~--G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~~~~n~~~D~ 256 (374)
T PF10340_consen 179 RQLVATYDYLVESE--GNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSSYHDNEKRDM 256 (374)
T ss_pred HHHHHHHHHHHhcc--CCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCccccccccccc
Confidence 99999999999542 247899999999999998876532 1 246899999999987521100 010
Q ss_pred CCchhhhhccC----c--CCccC-----CCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHH
Q 003363 718 PDWCYVESYGS----K--GKDSF-----TESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALR 786 (826)
Q Consensus 718 ~~~~~~~~~~~----~--~~~~~-----~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~ 786 (826)
-.+.....++. . ..... ...+..-+.+.|... + -++-++++.|+++-+. .+.+++.+.+.
T Consensus 257 l~~~~~~~~~~~y~~~~~~~~~~~~~~~~n~~~n~d~~~W~~I-----~--~~~~vfVi~Ge~Evfr--ddI~~~~~~~~ 327 (374)
T PF10340_consen 257 LSYKGLSMFGDAYIGNNDPENDLNSLPFVNIEYNFDAEDWKDI-----L--KKYSVFVIYGEDEVFR--DDILEWAKKLN 327 (374)
T ss_pred cchhhHHHHHHhhccccccccccccCCccCcccCCChhHHHHh-----c--cCCcEEEEECCccccH--HHHHHHHHHHh
Confidence 01000000110 0 00000 000000011122111 1 1357999999999766 88899999998
Q ss_pred hCCC-----CEEEEEeCCCCCCC
Q 003363 787 EKGV-----ETKVIVFPNDVHGI 804 (826)
Q Consensus 787 ~~g~-----~~~~~~~p~~~H~~ 804 (826)
..+. ..++.+-+++.|.-
T Consensus 328 ~~~~~~~~~~~nv~~~~~G~Hi~ 350 (374)
T PF10340_consen 328 DVKPNKFSNSNNVYIDEGGIHIG 350 (374)
T ss_pred hcCccccCCcceEEEecCCcccc
Confidence 6543 46778888888954
|
In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved []. |
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-07 Score=107.84 Aligned_cols=148 Identities=20% Similarity=0.245 Sum_probs=93.6
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc--eeE---------------EEecCCCccccccCCCcccceeec
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ--LEK---------------EFHVPQTVHGSVYADGWFEGISWN 216 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~--~~~---------------~~~~~~~~~g~v~~~~~~~~~~wS 216 (826)
+.+..+.|||||++||+.++. +++.+|.... ... ....-.+..+. +..+.||
T Consensus 70 ~sv~CVR~S~dG~~lAsGSDD-----~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~D------V~Dv~Ws 138 (942)
T KOG0973|consen 70 GSVNCVRFSPDGSYLASGSDD-----RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSD------VLDVNWS 138 (942)
T ss_pred CceeEEEECCCCCeEeeccCc-----ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCc------cceeccC
Confidence 458899999999999997654 4777782110 000 00011122222 3789999
Q ss_pred CCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCc
Q 003363 217 SDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLS 296 (826)
Q Consensus 217 PDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~ 296 (826)
||+..+|..+-+ +.+.+||..+.+...+. ......
T Consensus 139 p~~~~lvS~s~D--------------------------------------------nsViiwn~~tF~~~~vl-~~H~s~ 173 (942)
T KOG0973|consen 139 PDDSLLVSVSLD--------------------------------------------NSVIIWNAKTFELLKVL-RGHQSL 173 (942)
T ss_pred CCccEEEEeccc--------------------------------------------ceEEEEccccceeeeee-eccccc
Confidence 999999887543 56888988776543331 334456
Q ss_pred cceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC------
Q 003363 297 VGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES------ 370 (826)
Q Consensus 297 ~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~------ 370 (826)
+..++|-|-|++ ++..+.+ | .|-+++.. +-+-.+.++..
T Consensus 174 VKGvs~DP~Gky----~ASqsdD-------------r--tikvwrt~----------------dw~i~k~It~pf~~~~~ 218 (942)
T KOG0973|consen 174 VKGVSWDPIGKY----FASQSDD-------------R--TLKVWRTS----------------DWGIEKSITKPFEESPL 218 (942)
T ss_pred ccceEECCccCe----eeeecCC-------------c--eEEEEEcc----------------cceeeEeeccchhhCCC
Confidence 788999999998 7766622 2 34444431 34444555543
Q ss_pred CccccCceecCCCCEEEEEecc
Q 003363 371 ISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 371 ~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
......+.|||||++|+-.-.-
T Consensus 219 ~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 219 TTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred cceeeecccCCCcCeecchhhc
Confidence 2236789999999999865443
|
|
| >COG4188 Predicted dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-08 Score=104.18 Aligned_cols=120 Identities=22% Similarity=0.306 Sum_probs=86.4
Q ss_pred CeeEEEEEEecCCCCC---CCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC-
Q 003363 573 QKPFEAIFVSSSHKKD---CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG- 648 (826)
Q Consensus 573 g~~l~~~~~~P~~~~~---~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~- 648 (826)
+.++...++.|..... ..+.|+|++-||.+.. ...|...++.|++.||.|..++..|+..-+.......+..+.
T Consensus 49 ~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~--~~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~~~~~~~~~~~~p 126 (365)
T COG4188 49 DRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSY--VTGFAWLAEHLASYGFVVAAPDHPGSNAGGAPAAYAGPGSYAP 126 (365)
T ss_pred CCccccceeccCCCccccccCcCCeEEecCCCCCC--ccchhhhHHHHhhCceEEEeccCCCcccccCChhhcCCcccch
Confidence 4456667777775321 2478999999995443 668888999999999999999999965333222222211111
Q ss_pred ---cchHHHHHHHHHHHHHc---C----CCCCCcEEEEEecchHHHHHHHHHhCCC
Q 003363 649 ---SQDVNDVLTAIDHVIDM---G----LANPSKVTVVGGSHGGFLTTHLIGQAPD 694 (826)
Q Consensus 649 ---~~~~~D~~~~i~~l~~~---~----~~d~~rv~l~G~S~GG~~a~~~a~~~p~ 694 (826)
.....|+...+++|.+. + .+|..+|+++|||+||+.++.++....+
T Consensus 127 ~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~ 182 (365)
T COG4188 127 AEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAELD 182 (365)
T ss_pred hhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhcccccc
Confidence 12367888888888876 4 4889999999999999999998876543
|
|
| >PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-07 Score=97.27 Aligned_cols=235 Identities=14% Similarity=0.098 Sum_probs=132.3
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhh-hcCC---C------
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL-QSLP---G------ 645 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~-~~~~---~------ 645 (826)
.+-.++.|+.. ..+.+|++|.+.|.+...........+..|.+.|++.+++..+- ||..-. +... .
T Consensus 77 a~~~~~~P~~~-~~~~rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Py---yg~RkP~~Q~~s~l~~VsDl~ 152 (348)
T PF09752_consen 77 ARFQLLLPKRW-DSPYRPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPY---YGQRKPKDQRRSSLRNVSDLF 152 (348)
T ss_pred eEEEEEECCcc-ccCCCceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEeccc---ccccChhHhhcccccchhHHH
Confidence 34456678753 34668999999995543333333334667778899999988554 332110 0000 0
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhcc--CCCCCCchhh
Q 003363 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG--TTDIPDWCYV 723 (826)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~--~~~~~~~~~~ 723 (826)
..+...+.++...+.|+.++++ .+++|.|.||||++|..+++..|..+..+-+.++...-..+.. ......|...
T Consensus 153 ~~g~~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~vFt~Gvls~~i~W~~L 229 (348)
T PF09752_consen 153 VMGRATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVVFTEGVLSNSINWDAL 229 (348)
T ss_pred HHHhHHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcchhhhhhhcCCCHHHH
Confidence 1233457788889999999864 5899999999999999999999987665555544322111100 0112234322
Q ss_pred hhc-cCc--------------CCccCC---CCCChhhHHH-HhhcCcccccCCCCC-----cEEEEEeCCCCCCCcHHHH
Q 003363 724 ESY-GSK--------------GKDSFT---ESPSVEDLTR-FHSKSPISHISKVKT-----PTIFLLGAQDLRVPVSNGL 779 (826)
Q Consensus 724 ~~~-~~~--------------~~~~~~---~~~~~~~~~~-~~~~sp~~~~~~i~~-----PvLii~G~~D~~vp~~~~~ 779 (826)
+.- ... ...... .....+.... ...+.-..++.+..+ .+.++.+++|..||..+..
T Consensus 230 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~m~~~md~~T~l~nf~~P~dp~~ii~V~A~~DaYVPr~~v~ 309 (348)
T PF09752_consen 230 EKQFEDTVYEEEISDIPAQNKSLPLDSMEERRRDREALRFMRGVMDSFTHLTNFPVPVDPSAIIFVAAKNDAYVPRHGVL 309 (348)
T ss_pred HHHhcccchhhhhcccccCcccccchhhccccchHHHHHHHHHHHHhhccccccCCCCCCCcEEEEEecCceEechhhcc
Confidence 211 000 000000 0000111111 112222334444433 3788899999999988877
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 780 QYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 780 ~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
.+.+.... .++.++++ ||.-..--....+-+.|.+=|+
T Consensus 310 ~Lq~~WPG----sEvR~l~g-GHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 310 SLQEIWPG----SEVRYLPG-GHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred hHHHhCCC----CeEEEecC-CcEEEeeechHHHHHHHHHHhh
Confidence 66666654 67778877 9964433334455566666554
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.1e-07 Score=104.83 Aligned_cols=120 Identities=16% Similarity=0.211 Sum_probs=73.6
Q ss_pred HHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEE------eecCCCC---------ccceeec
Q 003363 83 SKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTV------ISKENEN---------SVTFQWA 147 (826)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~------i~~~~~~---------~~~lt~~ 147 (826)
.+.+-...++........+ ||||+++|+-.+. +.-.+|-+. +-+.++. ...|..+
T Consensus 59 ~k~l~~m~~h~~sv~CVR~---S~dG~~lAsGSDD-------~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H 128 (942)
T KOG0973|consen 59 PKHLCTMDDHDGSVNCVRF---SPDGSYLASGSDD-------RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH 128 (942)
T ss_pred chhheeeccccCceeEEEE---CCCCCeEeeccCc-------ceEEEeeecccCCcccccccccccccceeeEEEEEecC
Confidence 3444444455555555555 9999999875433 233444443 1111010 0122223
Q ss_pred CCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEee
Q 003363 148 PFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 227 (826)
Q Consensus 148 ~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~ 227 (826)
+ +.+....||||+..||-++..+ .+.+|+...... +..-.++++.| .+++|-|=|+++|..+.
T Consensus 129 ~-----~DV~Dv~Wsp~~~~lvS~s~Dn-----sViiwn~~tF~~-~~vl~~H~s~V------KGvs~DP~Gky~ASqsd 191 (942)
T KOG0973|consen 129 D-----SDVLDVNWSPDDSLLVSVSLDN-----SVIIWNAKTFEL-LKVLRGHQSLV------KGVSWDPIGKYFASQSD 191 (942)
T ss_pred C-----CccceeccCCCccEEEEecccc-----eEEEEcccccee-eeeeecccccc------cceEECCccCeeeeecC
Confidence 3 5689999999999999987654 577886555533 33334556666 89999999999998765
Q ss_pred cC
Q 003363 228 EP 229 (826)
Q Consensus 228 ~~ 229 (826)
+.
T Consensus 192 Dr 193 (942)
T KOG0973|consen 192 DR 193 (942)
T ss_pred Cc
Confidence 53
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-07 Score=104.05 Aligned_cols=197 Identities=14% Similarity=0.084 Sum_probs=136.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
+.+...+||||-++|+-.+++. ..++|. .....-+.. . +....| ..+.|+|-|-+.|..+.+.+.+
T Consensus 452 GPVyg~sFsPd~rfLlScSED~-----svRLWsl~t~s~~V~y-~-GH~~PV------wdV~F~P~GyYFatas~D~tAr 518 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDS-----SVRLWSLDTWSCLVIY-K-GHLAPV------WDVQFAPRGYYFATASHDQTAR 518 (707)
T ss_pred CceeeeeecccccceeeccCCc-----ceeeeecccceeEEEe-c-CCCcce------eeEEecCCceEEEecCCCceee
Confidence 4488899999999998776643 456663 222222332 1 332223 6788999997777666666654
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (826)
.|.....+....+.++..-.+-+.|.|+--...++..+..+-+||+.+|..+++. +.....+..++|||+|++
T Consensus 519 --LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF-~GH~~~V~al~~Sp~Gr~---- 591 (707)
T KOG0263|consen 519 --LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF-TGHKGPVTALAFSPCGRY---- 591 (707)
T ss_pred --eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe-cCCCCceEEEEEcCCCce----
Confidence 4444444455555566666666677777555566777888999999999888774 334457889999999999
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCC-CcceecCCCCccccCceecCCCCEEEEEec
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~ 391 (826)
|+..+ ....|.+||+ .+ ..+.++..+.+.+.+..||.||..||-.+.
T Consensus 592 LaSg~---------------ed~~I~iWDl-----------------~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~ 639 (707)
T KOG0263|consen 592 LASGD---------------EDGLIKIWDL-----------------ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGA 639 (707)
T ss_pred Eeecc---------------cCCcEEEEEc-----------------CCCcchhhhhcccCceeEEEEecCCCEEEecCC
Confidence 88766 2336889998 44 445677777888999999999998875553
Q ss_pred cCCCCCCCCcccceEEEEeCCC
Q 003363 392 KSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 392 ~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
+ ++|.+||+..
T Consensus 640 D-----------nsV~lWD~~~ 650 (707)
T KOG0263|consen 640 D-----------NSVRLWDLTK 650 (707)
T ss_pred C-----------CeEEEEEchh
Confidence 3 5688888754
|
|
| >PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.6e-09 Score=119.92 Aligned_cols=129 Identities=22% Similarity=0.230 Sum_probs=86.1
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc--cchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHH
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~--~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~ 653 (826)
|...++.|.......+.||+||||||.+..+.. ........++.++++||.+|||... +|--.........+...+.
T Consensus 109 L~LnI~~P~~~~~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~-~Gfl~~~~~~~~~gN~Gl~ 187 (535)
T PF00135_consen 109 LYLNIYTPSNASSNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGA-FGFLSLGDLDAPSGNYGLL 187 (535)
T ss_dssp -EEEEEEETSSSSTTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HH-HHH-BSSSTTSHBSTHHHH
T ss_pred HHHhhhhccccccccccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccc-cccccccccccCchhhhhh
Confidence 566789998765555899999999998776554 2333445677899999999999521 2211110111002445689
Q ss_pred HHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHh--CCCceeEEEecCCc
Q 003363 654 DVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPL 705 (826)
Q Consensus 654 D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~ 705 (826)
|+..|++|+.++ ..-|+++|.|+|+|.||..+..++.. ...+|+++|+.+|.
T Consensus 188 Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 188 DQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp HHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred hhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 999999999986 34799999999999999999877764 23589999999984
|
Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A .... |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.9e-07 Score=99.24 Aligned_cols=221 Identities=14% Similarity=0.167 Sum_probs=130.9
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (826)
...++||||++|||..... | .....|+++|+++|+...-.
T Consensus 127 ~~~~~Spdg~~la~~~s~~----------------------------------G-----~e~~~l~v~Dl~tg~~l~d~- 166 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDG----------------------------------G-----SEWYTLRVFDLETGKFLPDG- 166 (414)
T ss_dssp EEEEETTTSSEEEEEEEET----------------------------------T-----SSEEEEEEEETTTTEEEEEE-
T ss_pred eeeeECCCCCEEEEEecCC----------------------------------C-----CceEEEEEEECCCCcCcCCc-
Confidence 4688999999999986554 1 13478999999999654320
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc--eecC
Q 003363 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLT 368 (826)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~Lt 368 (826)
+. ......+.|++||+. ++|+......+.. ..+.+..||++.+ .+... +.+.
T Consensus 167 i~-~~~~~~~~W~~d~~~----~~y~~~~~~~~~~----~~~~~~~v~~~~~-----------------gt~~~~d~lvf 220 (414)
T PF02897_consen 167 IE-NPKFSSVSWSDDGKG----FFYTRFDEDQRTS----DSGYPRQVYRHKL-----------------GTPQSEDELVF 220 (414)
T ss_dssp EE-EEESEEEEECTTSSE----EEEEECSTTTSS-----CCGCCEEEEEEET-----------------TS-GGG-EEEE
T ss_pred cc-ccccceEEEeCCCCE----EEEEEeCcccccc----cCCCCcEEEEEEC-----------------CCChHhCeeEE
Confidence 11 112224999999999 9998866543210 1223558999998 44333 2444
Q ss_pred CCCcc---ccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCC
Q 003363 369 ESISS---AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 445 (826)
Q Consensus 369 ~~~~~---~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~ 445 (826)
..... ......|+||++|+..+.... ....+|++|+..+... . .....+... .++..
T Consensus 221 e~~~~~~~~~~~~~s~d~~~l~i~~~~~~-------~~s~v~~~d~~~~~~~--~---~~~~~l~~~-~~~~~------- 280 (414)
T PF02897_consen 221 EEPDEPFWFVSVSRSKDGRYLFISSSSGT-------SESEVYLLDLDDGGSP--D---AKPKLLSPR-EDGVE------- 280 (414)
T ss_dssp C-TTCTTSEEEEEE-TTSSEEEEEEESSS-------SEEEEEEEECCCTTTS--S----SEEEEEES-SSS-E-------
T ss_pred eecCCCcEEEEEEecCcccEEEEEEEccc-------cCCeEEEEeccccCCC--c---CCcEEEeCC-CCceE-------
Confidence 33222 346778999999877776641 1378999998875200 0 001111110 01100
Q ss_pred CCCCccccCCCEEEEEEEeC-CeEEEEEEECCCCc---EE-EecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEee
Q 003363 446 ILSNPWLSDGCTMLLSSIWG-SSQVIISVNVSSGE---LL-RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 520 (826)
Q Consensus 446 ~~~~~ws~Dg~~l~~~~~~~-~~~~l~~vdl~tg~---~~-~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 520 (826)
. .....|..+++.+..+ ....|+.++++... .. .+.+.........++..++.|++...... -++|.+.++
T Consensus 281 --~-~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~-~~~l~v~~~ 356 (414)
T PF02897_consen 281 --Y-YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG-SSRLRVYDL 356 (414)
T ss_dssp --E-EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT-EEEEEEEET
T ss_pred --E-EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC-ccEEEEEEC
Confidence 0 1112255677777654 56799999998776 34 45554444566678888888887766544 457888887
Q ss_pred c
Q 003363 521 V 521 (826)
Q Consensus 521 ~ 521 (826)
.
T Consensus 357 ~ 357 (414)
T PF02897_consen 357 D 357 (414)
T ss_dssp T
T ss_pred C
Confidence 6
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.1e-06 Score=94.08 Aligned_cols=231 Identities=17% Similarity=0.149 Sum_probs=151.6
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
.+...+|+-.|.+|||-... -..+.+|. ..+.- +.. .++....+ ..+..||||+.||..+++
T Consensus 309 ~I~t~~~N~tGDWiA~g~~k----lgQLlVweWqsEsY-VlK-QQgH~~~i------~~l~YSpDgq~iaTG~eD----- 371 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSK----LGQLLVWEWQSESY-VLK-QQGHSDRI------TSLAYSPDGQLIATGAED----- 371 (893)
T ss_pred eeeEEEecccCCEEEEcCCc----cceEEEEEeeccce-eee-ccccccce------eeEEECCCCcEEEeccCC-----
Confidence 47889999999999995432 12455662 22211 111 12222222 689999999999997765
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (826)
..+.|||..+|-...-. +.....+..+.|+.+|+. |
T Consensus 372 ---------------------------------------gKVKvWn~~SgfC~vTF-teHts~Vt~v~f~~~g~~----l 407 (893)
T KOG0291|consen 372 ---------------------------------------GKVKVWNTQSGFCFVTF-TEHTSGVTAVQFTARGNV----L 407 (893)
T ss_pred ---------------------------------------CcEEEEeccCceEEEEe-ccCCCceEEEEEEecCCE----E
Confidence 35788998888654432 455667889999999996 6
Q ss_pred EEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCc-cccCceecCCCCEEEEEecc
Q 003363 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS-SAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 314 vf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~-~~~~p~~SpDG~~l~f~s~~ 392 (826)
+..+ -++.+..+|+. .....+.+|.... .....+.-|-|. |++....
T Consensus 408 lssS---------------LDGtVRAwDlk----------------RYrNfRTft~P~p~QfscvavD~sGe-lV~AG~~ 455 (893)
T KOG0291|consen 408 LSSS---------------LDGTVRAWDLK----------------RYRNFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQ 455 (893)
T ss_pred EEee---------------cCCeEEeeeec----------------ccceeeeecCCCceeeeEEEEcCCCC-EEEeecc
Confidence 5555 33356677762 2233455554422 233445556676 5555554
Q ss_pred CCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003363 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (826)
+ ...|++|+++||+...+..+... .+..++|+|+|. ++++.+|+.+.++|-
T Consensus 456 d---------~F~IfvWS~qTGqllDiLsGHEg-------------------PVs~l~f~~~~~-~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 456 D---------SFEIFVWSVQTGQLLDILSGHEG-------------------PVSGLSFSPDGS-LLASGSWDKTVRIWD 506 (893)
T ss_pred c---------eEEEEEEEeecCeeeehhcCCCC-------------------cceeeEEccccC-eEEeccccceEEEEE
Confidence 3 37899999999987655544432 345778999998 667888999999998
Q ss_pred EECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeC
Q 003363 473 VNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 508 (826)
Q Consensus 473 vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~ 508 (826)
+=-..++++.|.-... +-...|.|||+++....-+
T Consensus 507 if~s~~~vEtl~i~sd-vl~vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 507 IFSSSGTVETLEIRSD-VLAVSFRPDGKELAVATLD 541 (893)
T ss_pred eeccCceeeeEeeccc-eeEEEEcCCCCeEEEEEec
Confidence 7656677777654433 4456899999998766543
|
|
| >PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-07 Score=89.79 Aligned_cols=168 Identities=19% Similarity=0.240 Sum_probs=96.3
Q ss_pred EEEEcCCCCCCCCccchH-HHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcE
Q 003363 595 IVVLHGGPHSVSLSSYSK-SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 673 (826)
Q Consensus 595 vv~~HGg~~~~~~~~~~~-~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv 673 (826)
|+++||...+.. ..|.. ..+.|... +.|-.+|.-- .+.++-...++..+.. +| +.+
T Consensus 1 v~IvhG~~~s~~-~HW~~wl~~~l~~~-~~V~~~~~~~------------------P~~~~W~~~l~~~i~~--~~-~~~ 57 (171)
T PF06821_consen 1 VLIVHGYGGSPP-DHWQPWLERQLENS-VRVEQPDWDN------------------PDLDEWVQALDQAIDA--ID-EPT 57 (171)
T ss_dssp EEEE--TTSSTT-TSTHHHHHHHHTTS-EEEEEC--TS--------------------HHHHHHHHHHCCHC---T-TTE
T ss_pred CEEeCCCCCCCc-cHHHHHHHHhCCCC-eEEeccccCC------------------CCHHHHHHHHHHHHhh--cC-CCe
Confidence 678999665543 45554 44455555 6776665411 1233444433333332 33 469
Q ss_pred EEEEecchHHHHHHHH-HhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcc
Q 003363 674 TVVGGSHGGFLTTHLI-GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPI 752 (826)
Q Consensus 674 ~l~G~S~GG~~a~~~a-~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 752 (826)
.|+|||.|+.+++.++ .+...+++++++++|...-... .. .+ ....+. +.
T Consensus 58 ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~-~~--~~-----------~~~~f~---------------~~ 108 (171)
T PF06821_consen 58 ILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDPE-PF--PP-----------ELDGFT---------------PL 108 (171)
T ss_dssp EEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCHH-CC--TC-----------GGCCCT---------------TS
T ss_pred EEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCccccc-ch--hh-----------hccccc---------------cC
Confidence 9999999999999999 6777899999999997431000 00 00 000000 00
Q ss_pred cccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 753 SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 753 ~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
....+..|.+++.+++|+.||++.+.++++++. .+++.++++||.... ....-+..+++.|+
T Consensus 109 -p~~~l~~~~~viaS~nDp~vp~~~a~~~A~~l~-----a~~~~~~~~GHf~~~--~G~~~~p~~~~~l~ 170 (171)
T PF06821_consen 109 -PRDPLPFPSIVIASDNDPYVPFERAQRLAQRLG-----AELIILGGGGHFNAA--SGFGPWPEGLDLLQ 170 (171)
T ss_dssp -HCCHHHCCEEEEEETTBSSS-HHHHHHHHHHHT------EEEEETS-TTSSGG--GTHSS-HHHHHHHH
T ss_pred -cccccCCCeEEEEcCCCCccCHHHHHHHHHHcC-----CCeEECCCCCCcccc--cCCCchHHHHHHhc
Confidence 011233566999999999999999999999996 589999999996532 22233455555554
|
The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A. |
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.4e-07 Score=90.54 Aligned_cols=269 Identities=16% Similarity=0.221 Sum_probs=144.1
Q ss_pred HHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCC
Q 003363 84 KLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP 163 (826)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SP 163 (826)
+.+.+|++........+ +.++.......++....+-.+.+++ +....+..|+... ..++...+|-|
T Consensus 85 ~~Iaqf~~vt~ws~~dl--------r~~aWhqH~~~fava~nddvVriy~--ksst~pt~Lks~s----QrnvtclawRP 150 (445)
T KOG2139|consen 85 KQIAQFTDVTLWSEIDL--------RGVAWHQHIIAFAVATNDDVVRIYD--KSSTCPTKLKSVS----QRNVTCLAWRP 150 (445)
T ss_pred HHhhchhhhhhhhhcce--------eeEeechhhhhhhhhccCcEEEEec--cCCCCCceecchh----hcceeEEEecc
Confidence 34445555555555444 2333332222223233334455554 2223344444322 14688999999
Q ss_pred CCCeEEEEecCCCCCCeEEEEec---CCceeEEEecCCCccccccCC---CcccceeecCCCCeEEEEeecCCCCCCCcc
Q 003363 164 SGSKLLVVRNPENESPIQFELWS---QSQLEKEFHVPQTVHGSVYAD---GWFEGISWNSDETLIAYVAEEPSPSKPTFS 237 (826)
Q Consensus 164 dG~~la~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~g~v~~~---~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~ 237 (826)
-+..-+.+.-+. =+.+|. .....+........|+.|+.+ ..+....|.+||..++-.+-
T Consensus 151 lsaselavgCr~-----gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~---------- 215 (445)
T KOG2139|consen 151 LSASELAVGCRA-----GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASF---------- 215 (445)
T ss_pred CCcceeeeeecc-----eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeeccc----------
Confidence 887655553332 256672 233333322223334444332 24478999999998887643
Q ss_pred CCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCC-ccceEEEeeCCCCCccEEEEE
Q 003363 238 LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL-SVGQVVWAPLNEGLHQYLVFV 316 (826)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~-~~~~~~wSPDg~~~~~~lvf~ 316 (826)
+..+|.+||+++|...+| .+... +..-..|||||.. | |.
T Consensus 216 ---------------------------------gsssi~iWdpdtg~~~pL--~~~glgg~slLkwSPdgd~----l-fa 255 (445)
T KOG2139|consen 216 ---------------------------------GSSSIMIWDPDTGQKIPL--IPKGLGGFSLLKWSPDGDV----L-FA 255 (445)
T ss_pred ---------------------------------CcceEEEEcCCCCCcccc--cccCCCceeeEEEcCCCCE----E-EE
Confidence 237899999999998888 43333 4556789999996 5 44
Q ss_pred eecCcceeeeeeeeccCCCceEEEE-cccccchhhhhhhhcCCCCCC-cceecCCCCccccCceecCCCCEEEEEeccCC
Q 003363 317 GWSSETRKLGIKYCYNRPCALYAVR-VSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 394 (826)
Q Consensus 317 ~~~~~~~~~g~~~~~~~~~~l~~~d-~~~~~~~~~~~~~~~~~~~~~-~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~ 394 (826)
+.-+ .++++= .. ..- ..+... +.+.+....|||+|++|+|.....
T Consensus 256 At~d---------------avfrlw~e~----------------q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgs- 302 (445)
T KOG2139|consen 256 ATCD---------------AVFRLWQEN----------------QSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGS- 302 (445)
T ss_pred eccc---------------ceeeeehhc----------------ccceecceec-cCCceeeeeecCCCCEEEEEEcCC-
Confidence 4211 222221 10 111 122222 234788899999999999998664
Q ss_pred CCCCCCcccceEEEEeCCCCCCCCc-ccceeeeeeeeeccCCCCC--cccccCCCCCCccccCCCEEEEEEE
Q 003363 395 VDSGAHSATDSLHRIDWPTNGNFSS-LEKIVDVIPVVQCAEGDCF--PGLYSSSILSNPWLSDGCTMLLSSI 463 (826)
Q Consensus 395 ~~~g~~~~~~~l~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~f--~g~~~~~~~~~~ws~Dg~~l~~~~~ 463 (826)
..||....+....... ..+...+..+...+.-..- ..+-+.....++|.|.|.+|.+...
T Consensus 303 ---------p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 303 ---------PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred ---------ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 4577766554332211 2222222222222111000 0122345567889999998876654
|
|
| >COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.2e-08 Score=98.28 Aligned_cols=208 Identities=14% Similarity=0.045 Sum_probs=121.5
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCC----cEEEEECCCCCCCCchhhhhcCCCCCCcc
Q 003363 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (826)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G----~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~ 650 (826)
+....+|.|+++....++|++++.||--+.... ........|...| -+++.+|+--....... .+ ....
T Consensus 81 ~~~~vv~lppgy~~~~k~pvl~~~DG~~~~~~g-~i~~~~dsli~~g~i~pai~vgid~~d~~~R~~~----~~-~n~~- 153 (299)
T COG2382 81 ERRRVVYLPPGYNPLEKYPVLYLQDGQDWFRSG-RIPRILDSLIAAGEIPPAILVGIDYIDVKKRREE----LH-CNEA- 153 (299)
T ss_pred ceeEEEEeCCCCCccccccEEEEeccHHHHhcC-ChHHHHHHHHHcCCCCCceEEecCCCCHHHHHHH----hc-ccHH-
Confidence 355678899999999999999999994332211 2223445555544 57788886432111111 11 1100
Q ss_pred hHHHHH-HHHHHHHHcCC--CCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhcc
Q 003363 651 DVNDVL-TAIDHVIDMGL--ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 727 (826)
Q Consensus 651 ~~~D~~-~~i~~l~~~~~--~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~ 727 (826)
-...+. +.+-++.++.. -+.++-+|+|.|+||.++++++.++|++|..++..+|.+++......
T Consensus 154 ~~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~~~~~~------------- 220 (299)
T COG2382 154 YWRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWTPLDTQ------------- 220 (299)
T ss_pred HHHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccCccccc-------------
Confidence 122222 23334444321 35567789999999999999999999999999999997754321100
Q ss_pred CcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCC
Q 003363 728 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 807 (826)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~ 807 (826)
+..+. ....+-.........-++...++.+.+. ...+++++.|++.|.++.+..|+| ||...
T Consensus 221 ----------~~~~~---~~~l~~~~a~~~~~~~~l~~g~~~~~~~--~pNr~L~~~L~~~g~~~~yre~~G-gHdw~-- 282 (299)
T COG2382 221 ----------PQGEV---AESLKILHAIGTDERIVLTTGGEEGDFL--RPNRALAAQLEKKGIPYYYREYPG-GHDWA-- 282 (299)
T ss_pred ----------cccch---hhhhhhhhccCccceEEeecCCcccccc--chhHHHHHHHHhcCCcceeeecCC-CCchh--
Confidence 00011 1101111111222232333334444444 556789999999999999999999 89764
Q ss_pred CCHHHHHHHHHHHHHHH
Q 003363 808 QSDFESFLNIGLWFKKY 824 (826)
Q Consensus 808 ~~~~~~~~~i~~w~~~~ 824 (826)
.+...+.++|...
T Consensus 283 ----~Wr~~l~~~L~~l 295 (299)
T COG2382 283 ----WWRPALAEGLQLL 295 (299)
T ss_pred ----HhHHHHHHHHHHh
Confidence 3334555555543
|
|
| >PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.4e-08 Score=95.72 Aligned_cols=117 Identities=26% Similarity=0.321 Sum_probs=89.4
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHH
Q 003363 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 654 (826)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D 654 (826)
+....++.|. ..+.+|+|+|+||..- ....|...++.++++||+|++++.-.... .-+..++++
T Consensus 32 PkpLlI~tP~---~~G~yPVilF~HG~~l--~ns~Ys~lL~HIASHGfIVVAPQl~~~~~-----------p~~~~Ei~~ 95 (307)
T PF07224_consen 32 PKPLLIVTPS---EAGTYPVILFLHGFNL--YNSFYSQLLAHIASHGFIVVAPQLYTLFP-----------PDGQDEIKS 95 (307)
T ss_pred CCCeEEecCC---cCCCccEEEEeechhh--hhHHHHHHHHHHhhcCeEEEechhhcccC-----------CCchHHHHH
Confidence 4556788887 6889999999999442 24567788899999999999999754211 233446888
Q ss_pred HHHHHHHHHHc--------CCCCCCcEEEEEecchHHHHHHHHHhCC-C-ceeEEEecCCccc
Q 003363 655 VLTAIDHVIDM--------GLANPSKVTVVGGSHGGFLTTHLIGQAP-D-KFVAAAARNPLCN 707 (826)
Q Consensus 655 ~~~~i~~l~~~--------~~~d~~rv~l~G~S~GG~~a~~~a~~~p-~-~~~a~v~~~p~~~ 707 (826)
..+.++|+.+. -..+.++++++|||.||-.|..+|..+. + .|.+.|-+.|+..
T Consensus 96 aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G 158 (307)
T PF07224_consen 96 AASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAG 158 (307)
T ss_pred HHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCC
Confidence 88999998764 1246789999999999999999988663 2 4788888888754
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-07 Score=96.29 Aligned_cols=100 Identities=24% Similarity=0.357 Sum_probs=64.9
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHH---CCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSS---VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~---~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (826)
.|.|+++||.+... ..|......+.. . |.|+.+|.||.+. +. .. ..........+..+.+. .
T Consensus 21 ~~~i~~~hg~~~~~--~~~~~~~~~~~~~~~~-~~~~~~d~~g~g~---s~-~~------~~~~~~~~~~~~~~~~~--~ 85 (282)
T COG0596 21 GPPLVLLHGFPGSS--SVWRPVFKVLPALAAR-YRVIAPDLRGHGR---SD-PA------GYSLSAYADDLAALLDA--L 85 (282)
T ss_pred CCeEEEeCCCCCch--hhhHHHHHHhhccccc-eEEEEecccCCCC---CC-cc------cccHHHHHHHHHHHHHH--h
Confidence 45899999987653 233332222222 3 9999999998443 32 00 11122223334444443 2
Q ss_pred CCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCcc
Q 003363 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (826)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 706 (826)
...++.++|||+||.+++.++.++|+.++++++.++..
T Consensus 86 ~~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~ 123 (282)
T COG0596 86 GLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAP 123 (282)
T ss_pred CCCceEEEEecccHHHHHHHHHhcchhhheeeEecCCC
Confidence 23449999999999999999999999999999888653
|
|
| >COG0627 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.5e-08 Score=102.67 Aligned_cols=227 Identities=17% Similarity=0.171 Sum_probs=131.4
Q ss_pred CCCCCcEEEEEcCCCCCC-CCccchHHHHHHHHCCcEEEEECCC--------------CC-CCCchhhhhcCCCCCCcch
Q 003363 588 DCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSSVGYSLLIVNYR--------------GS-LGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~-~~~~~~~~~~~la~~G~~Vl~~d~r--------------G~-~g~G~~~~~~~~~~~~~~~ 651 (826)
.+.+.|+++++||-.... ........-......|++++.+|-. |. .++-.++.+... ..+...
T Consensus 50 m~~~ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~-~~~~~q 128 (316)
T COG0627 50 MGRDIPVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPW-ASGPYQ 128 (316)
T ss_pred cCCCCCEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCcc-ccCccc
Confidence 457889999999944332 1112223444556788888887422 21 111111111110 011123
Q ss_pred HHHHH-HHHH-HHHHcCCCCC--CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhcc
Q 003363 652 VNDVL-TAID-HVIDMGLANP--SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 727 (826)
Q Consensus 652 ~~D~~-~~i~-~l~~~~~~d~--~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~ 727 (826)
.++++ .-+- .+.+....+. ++.+|+||||||+-|+.+|+++|++|+.+...+|+++........ . ......+
T Consensus 129 ~~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~-~---~~~~~~g 204 (316)
T COG0627 129 WETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPT-L---AMGDPWG 204 (316)
T ss_pred hhHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceecccccccccccccccc-c---ccccccc
Confidence 33332 1222 3333444454 389999999999999999999999999999999998865332222 0 0000001
Q ss_pred CcCCccCCCCCChhhHHHHhhcCcccccCC--------------CCCcEEEEEeCCCCCCC--cHHHHHHHHHHHhCCCC
Q 003363 728 SKGKDSFTESPSVEDLTRFHSKSPISHISK--------------VKTPTIFLLGAQDLRVP--VSNGLQYARALREKGVE 791 (826)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~--------------i~~PvLii~G~~D~~vp--~~~~~~~~~~l~~~g~~ 791 (826)
......+.+... ...+.+.+|...+++ ...++++-+|..|.+.. ....+.+.++++..|.+
T Consensus 205 ~~~~~~~~G~~~---~~~w~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~ 281 (316)
T COG0627 205 GKAFNAMLGPDS---DPAWQENDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIP 281 (316)
T ss_pred CccHHHhcCCCc---cccccccCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCC
Confidence 100111111110 112333444443332 44678888999998764 33477899999999999
Q ss_pred EEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 792 TKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 792 ~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
..+...++.+|.+... ...+..++.|+.+.|
T Consensus 282 ~~~~~~~~G~Hsw~~w---~~~l~~~~~~~a~~l 312 (316)
T COG0627 282 NGVRDQPGGDHSWYFW---ASQLADHLPWLAGAL 312 (316)
T ss_pred ceeeeCCCCCcCHHHH---HHHHHHHHHHHHHHh
Confidence 9999999999987532 245667788887765
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.2e-06 Score=96.60 Aligned_cols=243 Identities=12% Similarity=0.032 Sum_probs=131.5
Q ss_pred eCCCCCeEEEEecCC-CCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCC-CCeEEEEeecCCCCCCCccC
Q 003363 161 PSPSGSKLLVVRNPE-NESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD-ETLIAYVAEEPSPSKPTFSL 238 (826)
Q Consensus 161 ~SPdG~~la~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPD-g~~ia~~~~~~~~~~~~~~~ 238 (826)
.+.+++++|+.-... ++...++.+|..+....+..+ .+..+.| ..++|+|+ +..||..+.+
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L-~gH~~~V------~~lafsP~~~~lLASgS~D---------- 96 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKL-KGHTSSI------LDLQFNPCFSEILASGSED---------- 96 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEE-cCCCCCE------EEEEEcCCCCCEEEEEeCC----------
Confidence 445677777765432 344557778854443333333 2333444 89999997 6777766543
Q ss_pred CCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCce---------EeccCCCCCCccceEEEeeCCCCC
Q 003363 239 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV---------QAVKGIPKSLSVGQVVWAPLNEGL 309 (826)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~---------~~l~~~~~~~~~~~~~wSPDg~~~ 309 (826)
..|.+||+.++.. ..+ ......+..++|+|++..
T Consensus 97 ----------------------------------gtIrIWDi~t~~~~~~~i~~p~~~L--~gH~~~V~sVaf~P~g~~- 139 (568)
T PTZ00420 97 ----------------------------------LTIRVWEIPHNDESVKEIKDPQCIL--KGHKKKISIIDWNPMNYY- 139 (568)
T ss_pred ----------------------------------CeEEEEECCCCCccccccccceEEe--ecCCCcEEEEEECCCCCe-
Confidence 4677888765321 122 122346788999999987
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc-eecCCCCccccCceecCCCCEEEE
Q 003363 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVF 388 (826)
Q Consensus 310 ~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~~~~~~~p~~SpDG~~l~f 388 (826)
++.++. .+..|.++|+ .+++. ..+. ....+.+..|+|||+.|+.
T Consensus 140 ---iLaSgS--------------~DgtIrIWDl-----------------~tg~~~~~i~-~~~~V~SlswspdG~lLat 184 (568)
T PTZ00420 140 ---IMCSSG--------------FDSFVNIWDI-----------------ENEKRAFQIN-MPKKLSSLKWNIKGNLLSG 184 (568)
T ss_pred ---EEEEEe--------------CCCeEEEEEC-----------------CCCcEEEEEe-cCCcEEEEEECCCCCEEEE
Confidence 765541 2236888888 44432 2333 3345788999999998875
Q ss_pred EeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC-Ce
Q 003363 389 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-SS 467 (826)
Q Consensus 389 ~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~-~~ 467 (826)
.+.+ ..|.+||+.++........... .. ....+....|++|++.|+.++... +.
T Consensus 185 ~s~D-----------~~IrIwD~Rsg~~i~tl~gH~g-----------~~---~s~~v~~~~fs~d~~~IlTtG~d~~~~ 239 (568)
T PTZ00420 185 TCVG-----------KHMHIIDPRKQEIASSFHIHDG-----------GK---NTKNIWIDGLGGDDNYILSTGFSKNNM 239 (568)
T ss_pred EecC-----------CEEEEEECCCCcEEEEEecccC-----------Cc---eeEEEEeeeEcCCCCEEEEEEcCCCCc
Confidence 5433 4589999887554211000000 00 000000113568888665544333 33
Q ss_pred EEEEEEECCC-CcEEEe-cCCCC-CeeeEEEeecCCEEEEEEeCCCCCCeEEEEee
Q 003363 468 QVIISVNVSS-GELLRI-TPAES-NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 520 (826)
Q Consensus 468 ~~l~~vdl~t-g~~~~l-t~~~~-~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 520 (826)
..+..+|+.. ++.... ..+.. ..-.+.++++.+.+++++.+... +++.++
T Consensus 240 R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t---Ir~~e~ 292 (568)
T PTZ00420 240 REMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN---CRYYQH 292 (568)
T ss_pred cEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe---EEEEEc
Confidence 4677778763 333322 22211 11123455555555555544333 444444
|
|
| >KOG2112 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-07 Score=88.54 Aligned_cols=115 Identities=23% Similarity=0.333 Sum_probs=88.4
Q ss_pred CCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHH
Q 003363 667 LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRF 746 (826)
Q Consensus 667 ~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (826)
.++.+||.+-|.|+||.++++++..++....+.+..+++...... ..+.|. +.
T Consensus 89 Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~~----~~~~~~----------------~~------- 141 (206)
T KOG2112|consen 89 GIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRASI----GLPGWL----------------PG------- 141 (206)
T ss_pred CCCccceeEcccCchHHHHHHHHhccccccceeeccccccccchh----hccCCc----------------cc-------
Confidence 388999999999999999999999887666666665554321100 000110 00
Q ss_pred hhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 747 HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 747 ~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
.. .+|++..||+.|+.||..-+.+..+.|+..+..+++..|+|.+|... .+.+..+..|+++
T Consensus 142 --------~~--~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~-----~~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 142 --------VN--YTPILLCHGTADPLVPFRFGEKSAQFLKSLGVRVTFKPYPGLGHSTS-----PQELDDLKSWIKT 203 (206)
T ss_pred --------cC--cchhheecccCCceeehHHHHHHHHHHHHcCCceeeeecCCcccccc-----HHHHHHHHHHHHH
Confidence 00 68999999999999999999999999999999999999999999875 3556788888876
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.2e-07 Score=93.97 Aligned_cols=277 Identities=14% Similarity=0.104 Sum_probs=153.0
Q ss_pred hhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEE-ecC
Q 003363 119 NLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEF-HVP 197 (826)
Q Consensus 119 ~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~-~~~ 197 (826)
.+.+++....+..|+..+-....+-+. .-.|+|...+...+|||.|.+|+.++.. .|..+++.+|-..-.+ ...
T Consensus 181 R~~sGs~Dy~v~~wDf~gMdas~~~fr-~l~P~E~h~i~sl~ys~Tg~~iLvvsg~----aqakl~DRdG~~~~e~~KGD 255 (641)
T KOG0772|consen 181 RFVSGSLDYTVKFWDFQGMDASMRSFR-QLQPCETHQINSLQYSVTGDQILVVSGS----AQAKLLDRDGFEIVEFSKGD 255 (641)
T ss_pred eeeeccccceEEEEecccccccchhhh-ccCcccccccceeeecCCCCeEEEEecC----cceeEEccCCceeeeeeccc
Confidence 345566778888888754433222111 1135566678999999999999998643 3566666444222221 111
Q ss_pred CC------ccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCcc
Q 003363 198 QT------VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKR 271 (826)
Q Consensus 198 ~~------~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~ 271 (826)
+. ..|.+ ..+.+..|.|+.+..+..+...
T Consensus 256 QYI~Dm~nTKGHi---a~lt~g~whP~~k~~FlT~s~D------------------------------------------ 290 (641)
T KOG0772|consen 256 QYIRDMYNTKGHI---AELTCGCWHPDNKEEFLTCSYD------------------------------------------ 290 (641)
T ss_pred hhhhhhhccCCce---eeeeccccccCcccceEEecCC------------------------------------------
Confidence 11 11111 2335678999998777765432
Q ss_pred CceEEEEEccCCc--eEeccC---CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEccccc
Q 003363 272 QPSLFVININSGE--VQAVKG---IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 346 (826)
Q Consensus 272 ~~~l~v~d~~~g~--~~~l~~---~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 346 (826)
..|.+||+..-+ .++++. -...+.+..-+|+|||+. |+-.. .+. .|-.++...
T Consensus 291 -gtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~----iAagc-------------~DG--SIQ~W~~~~-- 348 (641)
T KOG0772|consen 291 -GTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL----IAAGC-------------LDG--SIQIWDKGS-- 348 (641)
T ss_pred -CcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch----hhhcc-------------cCC--ceeeeecCC--
Confidence 456666654322 223321 122346677899999998 76654 222 344444310
Q ss_pred chhhhhhhhcCCCCCCc----ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCC-CCccc
Q 003363 347 SEASELELKESSSEDLP----VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLE 421 (826)
Q Consensus 347 ~~~~~~~~~~~~~~~~~----~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~ 421 (826)
-+.. ++.-......+.+..||+||++|+-.+.+ ..|.+||+..-.. ...-.
T Consensus 349 -------------~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D-----------~tLKvWDLrq~kkpL~~~t 404 (641)
T KOG0772|consen 349 -------------RTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFD-----------DTLKVWDLRQFKKPLNVRT 404 (641)
T ss_pred -------------cccccceEeeeccCCCCceeEEEeccccchhhhccCC-----------Cceeeeeccccccchhhhc
Confidence 1111 11112223368899999999999755544 4588999865332 11110
Q ss_pred ceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEe---CCeEEEEEEECCCCc-EEEecCCCCCeeeEEEee
Q 003363 422 KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW---GSSQVIISVNVSSGE-LLRITPAESNFSWSLLTL 497 (826)
Q Consensus 422 ~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~---~~~~~l~~vdl~tg~-~~~lt~~~~~~~~~~~s~ 497 (826)
+. ...|+ ....+||||.+.|+-.++. .....|+.+|..+-+ +.+|.-....+....|.|
T Consensus 405 gL-----------~t~~~------~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp 467 (641)
T KOG0772|consen 405 GL-----------PTPFP------GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHP 467 (641)
T ss_pred CC-----------CccCC------CCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecc
Confidence 10 01122 2477899999855433332 123368888876643 334444444455567777
Q ss_pred cCCEEEEEEeC
Q 003363 498 DGDNIIAVSSS 508 (826)
Q Consensus 498 dg~~l~~~~s~ 508 (826)
.=++|++...+
T Consensus 468 kLNQi~~gsgd 478 (641)
T KOG0772|consen 468 KLNQIFAGSGD 478 (641)
T ss_pred hhhheeeecCC
Confidence 77777666555
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=4e-06 Score=94.64 Aligned_cols=160 Identities=8% Similarity=0.091 Sum_probs=97.2
Q ss_pred cccEEEEeCCC-CCeEEEEecCCCCCCeEEEEec---CCce-eE----EEecCCCccccccCCCcccceeecCCCCeEEE
Q 003363 154 TGASAVVPSPS-GSKLLVVRNPENESPIQFELWS---QSQL-EK----EFHVPQTVHGSVYADGWFEGISWNSDETLIAY 224 (826)
Q Consensus 154 ~~~~~~~~SPd-G~~la~~~~~~~~~~~~~~i~~---~~~~-~~----~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~ 224 (826)
..+...+|+|+ ++.||..+..+ .+.+|+ ++.. .. +..+ .+..+.| ..++|+|++..|+.
T Consensus 75 ~~V~~lafsP~~~~lLASgS~Dg-----tIrIWDi~t~~~~~~~i~~p~~~L-~gH~~~V------~sVaf~P~g~~iLa 142 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSEDL-----TIRVWEIPHNDESVKEIKDPQCIL-KGHKKKI------SIIDWNPMNYYIMC 142 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCC-----eEEEEECCCCCccccccccceEEe-ecCCCcE------EEEEECCCCCeEEE
Confidence 46899999997 67777665432 455662 2211 11 1111 1222333 89999999987765
Q ss_pred EeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEee
Q 003363 225 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP 304 (826)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSP 304 (826)
++.. +..|.+||+.+++.... ......+..++|+|
T Consensus 143 SgS~-------------------------------------------DgtIrIWDl~tg~~~~~--i~~~~~V~Slswsp 177 (568)
T PTZ00420 143 SSGF-------------------------------------------DSFVNIWDIENEKRAFQ--INMPKKLSSLKWNI 177 (568)
T ss_pred EEeC-------------------------------------------CCeEEEEECCCCcEEEE--EecCCcEEEEEECC
Confidence 4321 25789999988875432 22334577899999
Q ss_pred CCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccc-----cCce
Q 003363 305 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSA-----FFPR 378 (826)
Q Consensus 305 Dg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~-----~~p~ 378 (826)
||+. |+..+ .+..|.++|+ .+++ ...+..+.+.. ..-.
T Consensus 178 dG~l----Lat~s---------------~D~~IrIwD~-----------------Rsg~~i~tl~gH~g~~~s~~v~~~~ 221 (568)
T PTZ00420 178 KGNL----LSGTC---------------VGKHMHIIDP-----------------RKQEIASSFHIHDGGKNTKNIWIDG 221 (568)
T ss_pred CCCE----EEEEe---------------cCCEEEEEEC-----------------CCCcEEEEEecccCCceeEEEEeee
Confidence 9997 76554 2236888887 3443 33444443321 1124
Q ss_pred ecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 379 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 379 ~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
|++|+++|+-.+..+ ....+|.+||+..
T Consensus 222 fs~d~~~IlTtG~d~-------~~~R~VkLWDlr~ 249 (568)
T PTZ00420 222 LGGDDNYILSTGFSK-------NNMREMKLWDLKN 249 (568)
T ss_pred EcCCCCEEEEEEcCC-------CCccEEEEEECCC
Confidence 579999888766553 1234799999875
|
|
| >COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.9e-07 Score=90.75 Aligned_cols=206 Identities=16% Similarity=0.140 Sum_probs=110.5
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC-
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL- 667 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~- 667 (826)
..+..++.+.|-|+.. ..|..+...|.. -+.++.+.|+|.+ ..+ +..-..|+.+.++.+.....
T Consensus 5 ~~~~~L~cfP~AGGsa---~~fr~W~~~lp~-~iel~avqlPGR~---~r~--------~ep~~~di~~Lad~la~el~~ 69 (244)
T COG3208 5 GARLRLFCFPHAGGSA---SLFRSWSRRLPA-DIELLAVQLPGRG---DRF--------GEPLLTDIESLADELANELLP 69 (244)
T ss_pred CCCceEEEecCCCCCH---HHHHHHHhhCCc-hhheeeecCCCcc---ccc--------CCcccccHHHHHHHHHHHhcc
Confidence 3444566666766543 345555555533 4889999999943 222 22234556666665555422
Q ss_pred -CCCCcEEEEEecchHHHHHHHHHhCCC---ceeEEE---ecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCC-
Q 003363 668 -ANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAA---ARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS- 739 (826)
Q Consensus 668 -~d~~rv~l~G~S~GG~~a~~~a~~~p~---~~~a~v---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 739 (826)
.-..+++++||||||.+|..+|.+.-. ...+.. ..+|..+.. .......+-.+... ...+.+.+.
T Consensus 70 ~~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~--~~i~~~~D~~~l~~-----l~~lgG~p~e 142 (244)
T COG3208 70 PLLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDRG--KQIHHLDDADFLAD-----LVDLGGTPPE 142 (244)
T ss_pred ccCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCccc--CCccCCCHHHHHHH-----HHHhCCCChH
Confidence 223579999999999999998865311 122222 223311110 01111111111111 111222231
Q ss_pred -hhhHHHHh-----------hcCcccc--cCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCC
Q 003363 740 -VEDLTRFH-----------SKSPISH--ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 805 (826)
Q Consensus 740 -~~~~~~~~-----------~~sp~~~--~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 805 (826)
.++.+.+. ...-+.+ -..+.+|+.++.|++|..|..++...+.+..+. .+++.+|+| ||.+.
T Consensus 143 ~led~El~~l~LPilRAD~~~~e~Y~~~~~~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~---~f~l~~fdG-gHFfl 218 (244)
T COG3208 143 LLEDPELMALFLPILRADFRALESYRYPPPAPLACPIHAFGGEKDHEVSRDELGAWREHTKG---DFTLRVFDG-GHFFL 218 (244)
T ss_pred HhcCHHHHHHHHHHHHHHHHHhcccccCCCCCcCcceEEeccCcchhccHHHHHHHHHhhcC---CceEEEecC-cceeh
Confidence 11222221 1111122 135789999999999999987777666666554 599999976 79876
Q ss_pred CCCCHHHHHHHHHHHH
Q 003363 806 RPQSDFESFLNIGLWF 821 (826)
Q Consensus 806 ~~~~~~~~~~~i~~w~ 821 (826)
.... .++...|.+.+
T Consensus 219 ~~~~-~~v~~~i~~~l 233 (244)
T COG3208 219 NQQR-EEVLARLEQHL 233 (244)
T ss_pred hhhH-HHHHHHHHHHh
Confidence 4433 24444444444
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.3e-07 Score=94.82 Aligned_cols=249 Identities=12% Similarity=0.069 Sum_probs=153.5
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
+++..+.|.|.-..|+.. .-+ +.-++|.++ ......+..++... .+....|+|+|+..+|.+.+
T Consensus 214 ~~I~sv~FHp~~plllva-G~d-~~lrifqvDGk~N~~lqS~~l~~f---------Pi~~a~f~p~G~~~i~~s~r---- 278 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVA-GLD-GTLRIFQVDGKVNPKLQSIHLEKF---------PIQKAEFAPNGHSVIFTSGR---- 278 (514)
T ss_pred CCceEEEecCCCceEEEe-cCC-CcEEEEEecCccChhheeeeeccC---------ccceeeecCCCceEEEeccc----
Confidence 568999999976655544 332 555677776 22333333333222 13678899999966665432
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCC--CCccceEEEeeCCCCCc
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK--SLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~--~~~~~~~~wSPDg~~~~ 310 (826)
+.-+|.||+.++++..+....+ .-....+..|||++.
T Consensus 279 ---------------------------------------rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~f-- 317 (514)
T KOG2055|consen 279 ---------------------------------------RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNF-- 317 (514)
T ss_pred ---------------------------------------ceEEEEeeccccccccccCCCCcccchhheeEecCCCCe--
Confidence 3579999999999988852111 225667889999999
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEe
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 390 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s 390 (826)
|++.+ +.+.|+++.. .+++...-..-.+.+....||.||+.|+...
T Consensus 318 --ia~~G---------------~~G~I~lLha-----------------kT~eli~s~KieG~v~~~~fsSdsk~l~~~~ 363 (514)
T KOG2055|consen 318 --IAIAG---------------NNGHIHLLHA-----------------KTKELITSFKIEGVVSDFTFSSDSKELLASG 363 (514)
T ss_pred --EEEcc---------------cCceEEeehh-----------------hhhhhhheeeeccEEeeEEEecCCcEEEEEc
Confidence 99988 4457888886 5555433333466788899999998775443
Q ss_pred ccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEE
Q 003363 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470 (826)
Q Consensus 391 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l 470 (826)
++.++|+||+..... ...+.. ++.. .-.+++.|.+|+++ .+.+..|-..|
T Consensus 364 -----------~~GeV~v~nl~~~~~----------~~rf~D--~G~v------~gts~~~S~ng~yl-A~GS~~GiVNI 413 (514)
T KOG2055|consen 364 -----------GTGEVYVWNLRQNSC----------LHRFVD--DGSV------HGTSLCISLNGSYL-ATGSDSGIVNI 413 (514)
T ss_pred -----------CCceEEEEecCCcce----------EEEEee--cCcc------ceeeeeecCCCceE-EeccCcceEEE
Confidence 235799999877422 111111 1111 11366778999844 44455677788
Q ss_pred EEEE--CCCCcEEEecCCCC---CeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 003363 471 ISVN--VSSGELLRITPAES---NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 524 (826)
Q Consensus 471 ~~vd--l~tg~~~~lt~~~~---~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~ 524 (826)
|..+ ..++..+++..-+. .+....|++|+. |+++++.. .+..+.++.+.+.+
T Consensus 414 Yd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~-~knalrLVHvPS~T 470 (514)
T KOG2055|consen 414 YDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRV-KKNALRLVHVPSCT 470 (514)
T ss_pred eccchhhccCCCCchhhhhhhheeeeeeeeCcchh-hhhhhhhc-cccceEEEecccee
Confidence 8654 33455555543322 355567888776 44444432 33345566655443
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2e-06 Score=82.24 Aligned_cols=259 Identities=14% Similarity=0.119 Sum_probs=151.4
Q ss_pred eEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCC--CCCccCCCCCC
Q 003363 180 IQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG--SSDKDCNSWKG 255 (826)
Q Consensus 180 ~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 255 (826)
..+++| ..|.-.+.++.+.+ ....+...||++.||-.+... ...++....... .....+..-+.
T Consensus 20 hTIRfWqa~tG~C~rTiqh~ds---------qVNrLeiTpdk~~LAaa~~qh---vRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 20 HTIRFWQALTGICSRTIQHPDS---------QVNRLEITPDKKDLAAAGNQH---VRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred ceeeeeehhcCeEEEEEecCcc---------ceeeEEEcCCcchhhhccCCe---eEEEEccCCCCCceeEEeccCCceE
Confidence 567788 45655555554332 237899999999998765432 122332222211 11222222233
Q ss_pred cceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCC
Q 003363 256 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 335 (826)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~ 335 (826)
.+.|..|..--|++..+..+.+||+..-...++ ......+..+...|+-.. |+... ...
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~--~~~~spVn~vvlhpnQte----Lis~d---------------qsg 146 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRN--YQHNSPVNTVVLHPNQTE----LISGD---------------QSG 146 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchh--ccCCCCcceEEecCCcce----EEeec---------------CCC
Confidence 455666655567777889999999988666666 444567888999998776 65433 445
Q ss_pred ceEEEEcccccchhhhhhhhcCCCCCCcceecC-CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCC
Q 003363 336 ALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (826)
Q Consensus 336 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~ 414 (826)
+|+++|+. +..-...|. +....+.+....|||++|+-.-++ ...|+|++-++
T Consensus 147 ~irvWDl~----------------~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnk-----------G~cyvW~l~~~ 199 (311)
T KOG0315|consen 147 NIRVWDLG----------------ENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNK-----------GNCYVWRLLNH 199 (311)
T ss_pred cEEEEEcc----------------CCccccccCCCCCcceeeEEEcCCCcEEEEecCC-----------ccEEEEEccCC
Confidence 89999983 222233444 445568889999999999865544 45899998773
Q ss_pred CCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCC-cEE-EecCCCCCeee
Q 003363 415 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG-ELL-RITPAESNFSW 492 (826)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg-~~~-~lt~~~~~~~~ 492 (826)
... ..++|+.+.+. +..-.....+|||+++|+ +.+.+....||..| +- +.+ .|+.+..-+-.
T Consensus 200 ~~~------s~l~P~~k~~a-------h~~~il~C~lSPd~k~la-t~ssdktv~iwn~~--~~~kle~~l~gh~rWvWd 263 (311)
T KOG0315|consen 200 QTA------SELEPVHKFQA-------HNGHILRCLLSPDVKYLA-TCSSDKTVKIWNTD--DFFKLELVLTGHQRWVWD 263 (311)
T ss_pred Ccc------ccceEhhheec-------ccceEEEEEECCCCcEEE-eecCCceEEEEecC--CceeeEEEeecCCceEEe
Confidence 331 12333333221 111234667899999775 33334445555544 43 333 33433332333
Q ss_pred EEEeecCCEEEEEEeCCCCCCeEE
Q 003363 493 SLLTLDGDNIIAVSSSPVDVPQVK 516 (826)
Q Consensus 493 ~~~s~dg~~l~~~~s~~~~p~~l~ 516 (826)
-.||.||.+|+...++ .-.++|
T Consensus 264 c~FS~dg~YlvTassd--~~~rlW 285 (311)
T KOG0315|consen 264 CAFSADGEYLVTASSD--HTARLW 285 (311)
T ss_pred eeeccCccEEEecCCC--Cceeec
Confidence 5789898866654443 434454
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.7e-06 Score=92.10 Aligned_cols=262 Identities=16% Similarity=0.144 Sum_probs=132.1
Q ss_pred EEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 003363 157 SAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (826)
Q Consensus 157 ~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~ 235 (826)
....+||||++++... ++ + .+-.++ ...+..+.+...... .++++||||++|+-....
T Consensus 40 ~~~~~s~Dgr~~yv~~-rd-g--~vsviD~~~~~~v~~i~~G~~~----------~~i~~s~DG~~~~v~n~~------- 98 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVAN-RD-G--TVSVIDLATGKVVATIKVGGNP----------RGIAVSPDGKYVYVANYE------- 98 (369)
T ss_dssp EEEE-TT-SSEEEEEE-TT-S--EEEEEETTSSSEEEEEE-SSEE----------EEEEE--TTTEEEEEEEE-------
T ss_pred eEEEecCCCCEEEEEc-CC-C--eEEEEECCcccEEEEEecCCCc----------ceEEEcCCCCEEEEEecC-------
Confidence 4467899999976654 33 2 466666 455666666655555 689999999988665433
Q ss_pred ccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEec-c--CCC---CCCccceEEEeeCCCCC
Q 003363 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-K--GIP---KSLSVGQVVWAPLNEGL 309 (826)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l-~--~~~---~~~~~~~~~wSPDg~~~ 309 (826)
.+.+.++|.++.++... . +.+ ....+..+.-||+...
T Consensus 99 ------------------------------------~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~- 141 (369)
T PF02239_consen 99 ------------------------------------PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE- 141 (369)
T ss_dssp ------------------------------------TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE-
T ss_pred ------------------------------------CCceeEeccccccceeecccccccccccCCCceeEEecCCCCE-
Confidence 26789999888775543 1 001 1123345666787775
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc--ceecCCCCccccCceecCCCCEEE
Q 003363 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP--VVNLTESISSAFFPRFSPDGKFLV 387 (826)
Q Consensus 310 ~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~Lt~~~~~~~~p~~SpDG~~l~ 387 (826)
.++.-. ...+|+.+|.. +... .+.+. .........|+|||++++
T Consensus 142 ---fVv~lk--------------d~~~I~vVdy~----------------d~~~~~~~~i~-~g~~~~D~~~dpdgry~~ 187 (369)
T PF02239_consen 142 ---FVVNLK--------------DTGEIWVVDYS----------------DPKNLKVTTIK-VGRFPHDGGFDPDGRYFL 187 (369)
T ss_dssp ---EEEEET--------------TTTEEEEEETT----------------TSSCEEEEEEE---TTEEEEEE-TTSSEEE
T ss_pred ---EEEEEc--------------cCCeEEEEEec----------------cccccceeeec-ccccccccccCcccceee
Confidence 555542 22379999972 1111 12221 222345578999999876
Q ss_pred EEeccCCCCCCCCcccceEEEEeCCCCCCCCcccc---ee--ee--------eeeeeccCCCCCc----c----------
Q 003363 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK---IV--DV--------IPVVQCAEGDCFP----G---------- 440 (826)
Q Consensus 388 f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~---~~--~~--------~~~~~~~~~~~f~----g---------- 440 (826)
-..... +.|-++|..+++...+... .. .. -++|.....+.+. |
T Consensus 188 va~~~s----------n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~ 257 (369)
T PF02239_consen 188 VAANGS----------NKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDY 257 (369)
T ss_dssp EEEGGG----------TEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTT
T ss_pred eccccc----------ceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhh
Confidence 544332 3566666555433211000 00 00 0111111111110 0
Q ss_pred -------cccC-CCCCCccccCCCEEEEEEE-eCCeEEEEEEECCCCcEE-EecCCCC-CeeeEEEeecCCEEEEEEeCC
Q 003363 441 -------LYSS-SILSNPWLSDGCTMLLSSI-WGSSQVIISVNVSSGELL-RITPAES-NFSWSLLTLDGDNIIAVSSSP 509 (826)
Q Consensus 441 -------~~~~-~~~~~~ws~Dg~~l~~~~~-~~~~~~l~~vdl~tg~~~-~lt~~~~-~~~~~~~s~dg~~l~~~~s~~ 509 (826)
+-.. +...+.-+||++++++... ......|..+|..+.++. .+....+ ......|++||++++++.-+.
T Consensus 258 ~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~ 337 (369)
T PF02239_consen 258 AWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG 337 (369)
T ss_dssp BTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--
T ss_pred cCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecC
Confidence 0001 1123345899999988632 234568999999887653 4443332 255678999999999887665
Q ss_pred CCCCeEEEEeecc
Q 003363 510 VDVPQVKYGYFVD 522 (826)
Q Consensus 510 ~~p~~l~~~~~~~ 522 (826)
.. +|.++|..+
T Consensus 338 ~~--~i~v~D~~T 348 (369)
T PF02239_consen 338 NG--AIVVYDAKT 348 (369)
T ss_dssp TT--EEEEEETTT
T ss_pred CC--EEEEEECCC
Confidence 54 788888543
|
... |
| >KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.4e-07 Score=91.69 Aligned_cols=169 Identities=22% Similarity=0.261 Sum_probs=105.2
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcC------CCCC--------------
Q 003363 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL------PGKV-------------- 647 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~------~~~~-------------- 647 (826)
.+.++|+|||-||-++. ..-|+.....||++||+|.++..|-....-.-..... ...|
T Consensus 114 k~~k~PvvvFSHGLggs--Rt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~ 191 (399)
T KOG3847|consen 114 KNDKYPVVVFSHGLGGS--RTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFH 191 (399)
T ss_pred CCCCccEEEEecccccc--hhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEE
Confidence 47899999999995544 5678888999999999999999987432111000000 0000
Q ss_pred -----CcchHHHHHHHHHHHHHc---------------------CCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEe
Q 003363 648 -----GSQDVNDVLTAIDHVIDM---------------------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA 701 (826)
Q Consensus 648 -----~~~~~~D~~~~i~~l~~~---------------------~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 701 (826)
-..-+.+|..|++-|.+. +.+|..+++++|||+||..++...+.+ ..|+++|+
T Consensus 192 irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~-t~FrcaI~ 270 (399)
T KOG3847|consen 192 IRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSH-TDFRCAIA 270 (399)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhccc-cceeeeee
Confidence 011245677776655442 126778899999999999988777764 46888887
Q ss_pred cCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHH
Q 003363 702 RNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQY 781 (826)
Q Consensus 702 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~ 781 (826)
..+ |++. ..+ ....+++.|+|+|.-+ | +--.+. ...
T Consensus 271 lD~---------------WM~P---------------l~~-----------~~~~~arqP~~finv~-~-fQ~~en-~~v 306 (399)
T KOG3847|consen 271 LDA---------------WMFP---------------LDQ-----------LQYSQARQPTLFINVE-D-FQWNEN-LLV 306 (399)
T ss_pred eee---------------eecc---------------cch-----------hhhhhccCCeEEEEcc-c-ccchhH-HHH
Confidence 654 3221 000 1234566899888732 2 222222 333
Q ss_pred HHHHHhCCCCEEEEEeCCCCCC
Q 003363 782 ARALREKGVETKVIVFPNDVHG 803 (826)
Q Consensus 782 ~~~l~~~g~~~~~~~~p~~~H~ 803 (826)
.+.....+..-.++.+.|+-|.
T Consensus 307 mKki~~~n~g~~~it~~GsVHq 328 (399)
T KOG3847|consen 307 MKKIESQNEGNHVITLDGSVHQ 328 (399)
T ss_pred HHhhhCCCccceEEEEccceec
Confidence 4444444555577788888884
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-07 Score=96.65 Aligned_cols=238 Identities=14% Similarity=0.157 Sum_probs=147.3
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
.+..+.|.|+|++|+..+..+ -|.+|.+....-.+ +.+.. |..+....||++|.+++......-.+
T Consensus 98 ~V~~v~WtPeGRRLltgs~SG-----EFtLWNg~~fnFEt-ilQaH------Ds~Vr~m~ws~~g~wmiSgD~gG~iK-- 163 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSG-----EFTLWNGTSFNFET-ILQAH------DSPVRTMKWSHNGTWMISGDKGGMIK-- 163 (464)
T ss_pred ceeeEEEcCCCceeEeecccc-----cEEEecCceeeHHH-Hhhhh------cccceeEEEccCCCEEEEcCCCceEE--
Confidence 488899999999999876554 58999652211111 11122 12248999999999988765444332
Q ss_pred CccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCce-EeccCCCCCCccceEEEeeCCCCCccEE
Q 003363 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~-~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (826)
+|............-+..-+...+|+++-..-.+-..++.|.+||..-.+. ++| ......+..+.|.|.-. |
T Consensus 164 yWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL--~GHgwdVksvdWHP~kg-----L 236 (464)
T KOG0284|consen 164 YWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL--RGHGWDVKSVDWHPTKG-----L 236 (464)
T ss_pred ecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee--ccCCCCcceeccCCccc-----e
Confidence 444222221111112223334455665544444455678899999876554 455 45567888999999644 6
Q ss_pred EEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEecc
Q 003363 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 314 vf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
++++. +++-+-.+|. .+|. +-.|..+...+....|+|+|.+|+-.+.+
T Consensus 237 iasgs--------------kDnlVKlWDp-----------------rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD 285 (464)
T KOG0284|consen 237 IASGS--------------KDNLVKLWDP-----------------RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKD 285 (464)
T ss_pred eEEcc--------------CCceeEeecC-----------------CCcchhhhhhhccceEEEEEEcCCCCeeEEccCC
Confidence 66652 2235667886 4444 45666777788999999999999877755
Q ss_pred CCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003363 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (826)
..+.++|..+-+......+. ...+....|+|=...|+.+...++....|.
T Consensus 286 -----------~~~kv~DiR~mkEl~~~r~H-------------------kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~ 335 (464)
T KOG0284|consen 286 -----------QSCKVFDIRTMKELFTYRGH-------------------KKDVTSLTWHPLNESLFTSGGSDGSVVHWV 335 (464)
T ss_pred -----------ceEEEEehhHhHHHHHhhcc-------------------hhhheeeccccccccceeeccCCCceEEEe
Confidence 34778887642221111111 112346789997777877776677777777
Q ss_pred EE
Q 003363 473 VN 474 (826)
Q Consensus 473 vd 474 (826)
++
T Consensus 336 v~ 337 (464)
T KOG0284|consen 336 VG 337 (464)
T ss_pred cc
Confidence 76
|
|
| >cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.6e-08 Score=100.96 Aligned_cols=112 Identities=16% Similarity=0.196 Sum_probs=77.6
Q ss_pred CCCcEEEEEcCCCCCCCCccchH-HHH-HHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSK-SLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~-~~~-~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (826)
...|++|++||..... ...|.. ... ++...+|.|+++|+++..... ..... .. .....+++...++++.+...
T Consensus 34 ~~~p~vilIHG~~~~~-~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~~--y~~a~-~~-~~~v~~~la~~l~~L~~~~g 108 (275)
T cd00707 34 PSRPTRFIIHGWTSSG-EESWISDLRKAYLSRGDYNVIVVDWGRGANPN--YPQAV-NN-TRVVGAELAKFLDFLVDNTG 108 (275)
T ss_pred CCCCcEEEEcCCCCCC-CCcHHHHHHHHHHhcCCCEEEEEECccccccC--hHHHH-Hh-HHHHHHHHHHHHHHHHHhcC
Confidence 4468999999966543 134433 333 444568999999999842110 00000 00 01123567788888887755
Q ss_pred CCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCcc
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 706 (826)
++.++|.|+|||+||.++..++.++|++++.++...|..
T Consensus 109 ~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~ 147 (275)
T cd00707 109 LSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAG 147 (275)
T ss_pred CChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCc
Confidence 677899999999999999999999999999999988764
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.7e-07 Score=87.61 Aligned_cols=222 Identities=13% Similarity=0.132 Sum_probs=113.7
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCc
Q 003363 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~ 649 (826)
-.+|..+..|--.|++. ...+.|.||+..|.... ...|...+.+|+..||.|+.+|.--+- |.+... ..++..
T Consensus 9 ~~~~~~I~vwet~P~~~-~~~~~~tiliA~Gf~rr--mdh~agLA~YL~~NGFhViRyDsl~Hv--GlSsG~--I~eftm 81 (294)
T PF02273_consen 9 LEDGRQIRVWETRPKNN-EPKRNNTILIAPGFARR--MDHFAGLAEYLSANGFHVIRYDSLNHV--GLSSGD--INEFTM 81 (294)
T ss_dssp ETTTEEEEEEEE---TT-S---S-EEEEE-TT-GG--GGGGHHHHHHHHTTT--EEEE---B-----------------H
T ss_pred cCCCCEEEEeccCCCCC-CcccCCeEEEecchhHH--HHHHHHHHHHHhhCCeEEEeccccccc--cCCCCC--hhhcch
Confidence 35678899999888853 45667889988885433 457888999999999999999965321 222111 111211
Q ss_pred -chHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccC
Q 003363 650 -QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 728 (826)
Q Consensus 650 -~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 728 (826)
...+++..+++|+.+.+ ..+++|+..|.-|-+|...+.+ ++ ...+|...+++++..-.......++.-...-+.
T Consensus 82 s~g~~sL~~V~dwl~~~g---~~~~GLIAaSLSaRIAy~Va~~-i~-lsfLitaVGVVnlr~TLe~al~~Dyl~~~i~~l 156 (294)
T PF02273_consen 82 SIGKASLLTVIDWLATRG---IRRIGLIAASLSARIAYEVAAD-IN-LSFLITAVGVVNLRDTLEKALGYDYLQLPIEQL 156 (294)
T ss_dssp HHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTT-S---SEEEEES--S-HHHHHHHHHSS-GGGS-GGG-
T ss_pred HHhHHHHHHHHHHHHhcC---CCcchhhhhhhhHHHHHHHhhc-cC-cceEEEEeeeeeHHHHHHHHhccchhhcchhhC
Confidence 23578999999999776 4679999999999999999885 43 667777779988753211100000000000000
Q ss_pred cCCccCCCCCC-hh-hHHHHh------hcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 003363 729 KGKDSFTESPS-VE-DLTRFH------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 800 (826)
Q Consensus 729 ~~~~~~~~~~~-~~-~~~~~~------~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~ 800 (826)
...-.+.+... .+ ...... ..+....++.+.+|++.+++++|..|...+..++...+.. ..++++.++|+
T Consensus 157 p~dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~q~eV~~~~~~~~s--~~~klysl~Gs 234 (294)
T PF02273_consen 157 PEDLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVKQSEVEELLDNINS--NKCKLYSLPGS 234 (294)
T ss_dssp -SEEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS-HHHHHHHHTT-TT----EEEEEETT-
T ss_pred CCcccccccccchHHHHHHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCccccHHHHHHHHHhcCC--CceeEEEecCc
Confidence 00000111100 00 001111 1123456778899999999999999987777766665543 35889999999
Q ss_pred CCCCC
Q 003363 801 VHGIE 805 (826)
Q Consensus 801 ~H~~~ 805 (826)
.|.+.
T Consensus 235 ~HdL~ 239 (294)
T PF02273_consen 235 SHDLG 239 (294)
T ss_dssp SS-TT
T ss_pred cchhh
Confidence 99875
|
Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B. |
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-06 Score=85.49 Aligned_cols=274 Identities=14% Similarity=0.127 Sum_probs=155.0
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (826)
+++|.++++-. +....+.+|+.-+.. +..- -|+|+ ..+..-++||+|+.+|-..- +....+|.
T Consensus 63 ws~Dsr~ivSa---------SqDGklIvWDs~Ttn-K~ha---ipl~s--~WVMtCA~sPSg~~VAcGGL--dN~Csiy~ 125 (343)
T KOG0286|consen 63 WSTDSRRIVSA---------SQDGKLIVWDSFTTN-KVHA---IPLPS--SWVMTCAYSPSGNFVACGGL--DNKCSIYP 125 (343)
T ss_pred ecCCcCeEEee---------ccCCeEEEEEccccc-ceeE---EecCc--eeEEEEEECCCCCeEEecCc--CceeEEEe
Confidence 56666666432 344566666643322 1111 22332 56889999999999987432 24556776
Q ss_pred Ee-c--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceee
Q 003363 184 LW-S--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (826)
Q Consensus 184 i~-~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (826)
+. . .+.....-.+ .+..|-+ +...|-+|+. |+..+.+.+-. .|+....+....+.+|..-+-.....
T Consensus 126 ls~~d~~g~~~v~r~l-~gHtgyl------ScC~f~dD~~-ilT~SGD~TCa--lWDie~g~~~~~f~GH~gDV~slsl~ 195 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSREL-AGHTGYL------SCCRFLDDNH-ILTGSGDMTCA--LWDIETGQQTQVFHGHTGDVMSLSLS 195 (343)
T ss_pred cccccccccceeeeee-cCcccee------EEEEEcCCCc-eEecCCCceEE--EEEcccceEEEEecCCcccEEEEecC
Confidence 66 2 2222222122 2333333 7888988775 66665554322 34444444444455555544455556
Q ss_pred cCCCccC-CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEE
Q 003363 261 EDWGETY-AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 339 (826)
Q Consensus 261 ~d~g~~~-~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~ 339 (826)
|.-+.++ ++.-+..-++||+..+..++-. ...+..+..+.|-|+|.. ++-.+. +..+++|-
T Consensus 196 p~~~ntFvSg~cD~~aklWD~R~~~c~qtF-~ghesDINsv~ffP~G~a----fatGSD-------------D~tcRlyD 257 (343)
T KOG0286|consen 196 PSDGNTFVSGGCDKSAKLWDVRSGQCVQTF-EGHESDINSVRFFPSGDA----FATGSD-------------DATCRLYD 257 (343)
T ss_pred CCCCCeEEecccccceeeeeccCcceeEee-cccccccceEEEccCCCe----eeecCC-------------CceeEEEe
Confidence 6223333 4445678899999888776652 233446789999999998 665552 22234444
Q ss_pred EEcccccchhhhhhhhcCCCCCCcceecCCC--CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCC
Q 003363 340 VRVSLYKSEASELELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (826)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~--~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~ 417 (826)
+. +..++...... ...+.+..||.-|+.| |....+ ....+||.-.++..
T Consensus 258 lR------------------aD~~~a~ys~~~~~~gitSv~FS~SGRlL-fagy~d----------~~c~vWDtlk~e~v 308 (343)
T KOG0286|consen 258 LR------------------ADQELAVYSHDSIICGITSVAFSKSGRLL-FAGYDD----------FTCNVWDTLKGERV 308 (343)
T ss_pred ec------------------CCcEEeeeccCcccCCceeEEEcccccEE-EeeecC----------CceeEeeccccceE
Confidence 43 22333332222 3457899999999855 554332 45778885554432
Q ss_pred CcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003363 418 SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (826)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (826)
-+..+. ...+.-+..+|||- .+.+.+|+...+||
T Consensus 309 g~L~GH-------------------eNRvScl~~s~DG~-av~TgSWDs~lriW 342 (343)
T KOG0286|consen 309 GVLAGH-------------------ENRVSCLGVSPDGM-AVATGSWDSTLRIW 342 (343)
T ss_pred EEeecc-------------------CCeeEEEEECCCCc-EEEecchhHheeec
Confidence 222222 12344566789996 55777787777776
|
|
| >COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.4e-07 Score=91.54 Aligned_cols=227 Identities=17% Similarity=0.173 Sum_probs=126.7
Q ss_pred CCCcEEEEEcCCCCCCCCccc-----hHHHHHHH-------HCCcEEEEECCCCCC-CC-chhhhhcCC----CCCCcch
Q 003363 590 SCDPLIVVLHGGPHSVSLSSY-----SKSLAFLS-------SVGYSLLIVNYRGSL-GF-GEEALQSLP----GKVGSQD 651 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~-----~~~~~~la-------~~G~~Vl~~d~rG~~-g~-G~~~~~~~~----~~~~~~~ 651 (826)
.+..+||++|+-.+....... ..+.+.|. -.-|.||++|.-|+. |. |.......- .......
T Consensus 49 ~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~t 128 (368)
T COG2021 49 EKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVIT 128 (368)
T ss_pred cCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCccc
Confidence 556789999984432211110 01333333 344999999988864 22 111111110 1223356
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEE-EEEecchHHHHHHHHHhCCCceeEEEecCCccchh---------hhccCCCCCCch
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA---------LMVGTTDIPDWC 721 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~-l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~---------~~~~~~~~~~~~ 721 (826)
+.|...+-+.|+++-.| +++. ++|.||||+.++..+..+||++..++.++...... .......-|.|.
T Consensus 129 i~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~~~ia~~~~~r~AI~~DP~~n 206 (368)
T COG2021 129 IRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSAQNIAFNEVQRQAIEADPDWN 206 (368)
T ss_pred HHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCHHHHHHHHHHHHHHHhCCCcc
Confidence 88988888888887434 5665 99999999999999999999988877766532110 000000111220
Q ss_pred ------------------------------hhhhccCcCCcc-CCCCCChhhHHHH------------------------
Q 003363 722 ------------------------------YVESYGSKGKDS-FTESPSVEDLTRF------------------------ 746 (826)
Q Consensus 722 ------------------------------~~~~~~~~~~~~-~~~~~~~~~~~~~------------------------ 746 (826)
+.+.++...... ..........+.|
T Consensus 207 ~G~Y~~~~~P~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~~~~~~~~f~vESYL~~qg~kf~~rfDaNsYL~lt~al 286 (368)
T COG2021 207 GGDYYEGTQPERGLRLARMLAHLTYRSEEELDERFGRRLQADPLRGGGVRFAVESYLDYQGDKFVARFDANSYLYLTRAL 286 (368)
T ss_pred CCCccCCCCcchhHHHHHHHHHHHccCHHHHHHHhcccccccccCCCchhHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 001111100000 0000000011111
Q ss_pred hhcCcccc-------cCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEe-CCCCCCCCCCCCHHHHHHHHH
Q 003363 747 HSKSPISH-------ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF-PNDVHGIERPQSDFESFLNIG 818 (826)
Q Consensus 747 ~~~sp~~~-------~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~-p~~~H~~~~~~~~~~~~~~i~ 818 (826)
...++... +.++++|+|++.-+.|...|+++.+++.+.|+..+. ++.+ ...||.-...+.. .+...|.
T Consensus 287 d~~D~s~~~~~l~~al~~i~~~~lv~gi~sD~lfp~~~~~~~~~~L~~~~~---~~~i~S~~GHDaFL~e~~-~~~~~i~ 362 (368)
T COG2021 287 DYHDVSRGRGDLTAALARIKAPVLVVGITSDWLFPPELQRALAEALPAAGA---LREIDSPYGHDAFLVESE-AVGPLIR 362 (368)
T ss_pred HhcCCCCCcCcHHHHHhcCccCEEEEEecccccCCHHHHHHHHHhccccCc---eEEecCCCCchhhhcchh-hhhHHHH
Confidence 12233222 778999999999999999999999999999998765 4333 3457853322222 3446666
Q ss_pred HHHH
Q 003363 819 LWFK 822 (826)
Q Consensus 819 ~w~~ 822 (826)
.||+
T Consensus 363 ~fL~ 366 (368)
T COG2021 363 KFLA 366 (368)
T ss_pred HHhh
Confidence 6765
|
|
| >TIGR03230 lipo_lipase lipoprotein lipase | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-07 Score=101.67 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=76.2
Q ss_pred CCcEEEEEcCCCCCCCCccchH-HHHHHH-H-CCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSK-SLAFLS-S-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~-~~~~la-~-~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (826)
..|++|++||.........|.. ....|. . ..|.|+++|++|.+ ........ ..-....+++.+.+++|.+...
T Consensus 40 ~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g---~s~y~~a~-~~t~~vg~~la~lI~~L~~~~g 115 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRA---QQHYPTSA-AYTKLVGKDVAKFVNWMQEEFN 115 (442)
T ss_pred CCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcC---CCCCcccc-ccHHHHHHHHHHHHHHHHHhhC
Confidence 4588999999664322234544 344443 2 36999999999843 22110000 1111123567777888876544
Q ss_pred CCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCcc
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 706 (826)
++.+++.|+|||+||.++..++..+|+++.++++..|..
T Consensus 116 l~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAg 154 (442)
T TIGR03230 116 YPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAG 154 (442)
T ss_pred CCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCC
Confidence 678999999999999999999999999999999988853
|
Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity. |
| >TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.9e-07 Score=96.44 Aligned_cols=202 Identities=9% Similarity=0.059 Sum_probs=119.8
Q ss_pred hHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHH
Q 003363 611 SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG 690 (826)
Q Consensus 611 ~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~ 690 (826)
....+.|.+ |+.|+++|..-... .+..-+...++|....+...++. +.++ +.++|+|+||.+++.+++
T Consensus 120 RS~V~~Ll~-g~dVYl~DW~~p~~--------vp~~~~~f~ldDYi~~l~~~i~~--~G~~-v~l~GvCqgG~~~laa~A 187 (406)
T TIGR01849 120 RSTVEALLP-DHDVYITDWVNARM--------VPLSAGKFDLEDYIDYLIEFIRF--LGPD-IHVIAVCQPAVPVLAAVA 187 (406)
T ss_pred HHHHHHHhC-CCcEEEEeCCCCCC--------CchhcCCCCHHHHHHHHHHHHHH--hCCC-CcEEEEchhhHHHHHHHH
Confidence 446777888 99999999865221 11122344567766655555554 3344 999999999999776665
Q ss_pred hC-----CCceeEEEecCCccchhhhccC------------------------------CCCCCchhhhhccC-c-----
Q 003363 691 QA-----PDKFVAAAARNPLCNLALMVGT------------------------------TDIPDWCYVESYGS-K----- 729 (826)
Q Consensus 691 ~~-----p~~~~a~v~~~p~~~~~~~~~~------------------------------~~~~~~~~~~~~~~-~----- 729 (826)
.. |..++.+++..+.+|.....+. ...|.+.....+-. +
T Consensus 188 l~a~~~~p~~~~sltlm~~PID~~~~p~~v~~~a~~~~i~~~~~~~i~~vp~~~~g~gr~v~PG~~~~~~F~~mnp~r~~ 267 (406)
T TIGR01849 188 LMAENEPPAQPRSMTLMGGPIDARASPTVVNELAREKPIEWFQHNVIMRVPFPYPGAGRLVYPGFLQLAGFISMNLDRHT 267 (406)
T ss_pred HHHhcCCCCCcceEEEEecCccCCCCCchHHHHhhcccHHHHHHHhhhccCccccCCCCcccCHHHHHHHHHHcCcchHH
Confidence 44 5678999988877765321000 01111110000000 0
Q ss_pred -----CCccCC--CCCCh----------------------hhHHHHhhcCcc-----------cccCCCC-CcEEEEEeC
Q 003363 730 -----GKDSFT--ESPSV----------------------EDLTRFHSKSPI-----------SHISKVK-TPTIFLLGA 768 (826)
Q Consensus 730 -----~~~~~~--~~~~~----------------------~~~~~~~~~sp~-----------~~~~~i~-~PvLii~G~ 768 (826)
....+. ..+.. +..+.+...+.+ -.+++|+ +|+|.+.|+
T Consensus 268 ~~~~~~~~~l~~gd~~~~~~~~~f~~~y~d~~dlpge~y~~~v~~vf~~n~L~~G~l~v~G~~Vdl~~I~~~pll~V~ge 347 (406)
T TIGR01849 268 KAHSDFFLHLVKGDGQEADKHRIFYDEYLAVMDMTAEFYLQTIDVVFQQFLLPQGKFIVEGKRVDPGAITRVALLTVEGE 347 (406)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHhCCccCCcEEECCEEecHHHCcccceEEEecc
Confidence 000000 00000 001111111111 2356788 999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCC-CCEEEEEeCCCCCC--CCCCCCHHHHHHHHHHHHHHH
Q 003363 769 QDLRVPVSNGLQYARALREKG-VETKVIVFPNDVHG--IERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 769 ~D~~vp~~~~~~~~~~l~~~g-~~~~~~~~p~~~H~--~~~~~~~~~~~~~i~~w~~~~ 824 (826)
.|.++|+.++..+.+.....+ .+.+.+..+++||. +.......+.+..|.+|+.++
T Consensus 348 ~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 348 NDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRRN 406 (406)
T ss_pred CCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHhC
Confidence 999999999998888753332 23556777889996 445666678899999999864
|
This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some |
| >COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.2e-06 Score=83.88 Aligned_cols=211 Identities=13% Similarity=0.152 Sum_probs=113.0
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcE-EEEECCCC---------CCCCchhh--
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYS-LLIVNYRG---------SLGFGEEA-- 639 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~-Vl~~d~rG---------~~g~G~~~-- 639 (826)
.+...+.++..|+++.++.+||||.++-|.... ..........+++.-.. .+.+.|+. ...|-...
T Consensus 19 ~~~~yri~i~~P~~~~~~~~YpVlY~lDGn~vf--~~~~~~~~~~~~~~~~~~iv~iGye~~~~~~~~~r~~DyTp~~~~ 96 (264)
T COG2819 19 TGRKYRIFIATPKNYPKPGGYPVLYMLDGNAVF--NALTEIMLRILADLPPPVIVGIGYETILVFDPNRRAYDYTPPSAN 96 (264)
T ss_pred CCcEEEEEecCCCCCCCCCCCcEEEEecchhhh--chHHHHhhhhhhcCCCceEEEeccccccccccccccccCCCCCCC
Confidence 467788899999998777779977666663211 11111112223332222 22233332 11111110
Q ss_pred --hhcC----CCCCCcch--HHHHHHHHHHHHH-cCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh
Q 003363 640 --LQSL----PGKVGSQD--VNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710 (826)
Q Consensus 640 --~~~~----~~~~~~~~--~~D~~~~i~~l~~-~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~ 710 (826)
.... ...-|..+ .+.+..-+.-.++ ...++.++.+|+|||+||.+++.++..+|+.|...++.+|..-+..
T Consensus 97 ~~~~~~~~~~~~~gGg~~~f~~fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlWw~n 176 (264)
T COG2819 97 AIVASSRDGFYQFGGGGDAFREFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLWWHN 176 (264)
T ss_pred cccccccCCCCCCCCChHHHHHHHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchhhhCC
Confidence 0000 11111111 2334444443333 4668999999999999999999999999999999999998653211
Q ss_pred hccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCC--CCC------CCcHHHHHHH
Q 003363 711 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ--DLR------VPVSNGLQYA 782 (826)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~--D~~------vp~~~~~~~~ 782 (826)
...+....-.... + ..++.|..|.. |.. ....++.+..
T Consensus 177 --------------------------------~~~l~~~~~~~~~-~-~~~i~l~iG~~e~~~~~~~~~~~~~~~~~~~~ 222 (264)
T COG2819 177 --------------------------------EAILREIESLKLL-K-TKRICLYIGSGELDSSRSIRMAENKQEAAELS 222 (264)
T ss_pred --------------------------------HHHhccccccccC-C-CcceEEEecccccCcchhhhhhhHHHHHHHHH
Confidence 1111111111111 2 44555554443 331 1234444555
Q ss_pred HHHHh-CCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 783 RALRE-KGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 783 ~~l~~-~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
+.+++ .|..+.+..+|+.+|+-. ....+..++.|+.
T Consensus 223 ~~~~~~~g~~~~f~~~~~~~H~~~----~~~~~~~al~~l~ 259 (264)
T COG2819 223 SLLEKRTGARLVFQEEPLEHHGSV----IHASLPSALRFLD 259 (264)
T ss_pred HHHhhccCCceEecccccccccch----HHHHHHHHHHhhh
Confidence 56666 677888889998888643 1233445555553
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2e-06 Score=93.27 Aligned_cols=253 Identities=15% Similarity=0.148 Sum_probs=147.7
Q ss_pred CCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecC
Q 003363 138 NENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNS 217 (826)
Q Consensus 138 ~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSP 217 (826)
.+....|.... ...+..+.|+|+|+.||.....+ .+.||+..+..++........+.| +.++|+
T Consensus 206 s~~v~~l~~~~----~~~vtSv~ws~~G~~LavG~~~g-----~v~iwD~~~~k~~~~~~~~h~~rv------g~laW~- 269 (484)
T KOG0305|consen 206 SGSVTELCSFG----EELVTSVKWSPDGSHLAVGTSDG-----TVQIWDVKEQKKTRTLRGSHASRV------GSLAWN- 269 (484)
T ss_pred CCceEEeEecC----CCceEEEEECCCCCEEEEeecCC-----eEEEEehhhccccccccCCcCcee------EEEecc-
Confidence 34445554332 15689999999999999976554 677886544444443333233333 788888
Q ss_pred CCCeEEEEeecCCCCCCCccCCCCCC-CCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc-eEeccCCCCCC
Q 003363 218 DETLIAYVAEEPSPSKPTFSLGSTKG-GSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSL 295 (826)
Q Consensus 218 Dg~~ia~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~~~~~~~ 295 (826)
+..+...+.+...-. ++...... ......|..-+-...|.+|......+..++.+++||....+ ...+ +....
T Consensus 270 -~~~lssGsr~~~I~~--~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~--~~H~a 344 (484)
T KOG0305|consen 270 -SSVLSSGSRDGKILN--HDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF--TEHTA 344 (484)
T ss_pred -CceEEEecCCCcEEE--EEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEE--eccce
Confidence 333333332221100 00000000 00122233323345578886566666677899999984443 3334 45555
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCcccc
Q 003363 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 375 (826)
Q Consensus 296 ~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~ 375 (826)
.+-.++|+|=-+. |+-++-.. .+..|..+|. .+|...+.......+.
T Consensus 345 AVKA~awcP~q~~----lLAsGGGs------------~D~~i~fwn~-----------------~~g~~i~~vdtgsQVc 391 (484)
T KOG0305|consen 345 AVKALAWCPWQSG----LLATGGGS------------ADRCIKFWNT-----------------NTGARIDSVDTGSQVC 391 (484)
T ss_pred eeeEeeeCCCccC----ceEEcCCC------------cccEEEEEEc-----------------CCCcEecccccCCcee
Confidence 7788999998887 77765221 2236888887 6666655555566789
Q ss_pred CceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCC
Q 003363 376 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 455 (826)
Q Consensus 376 ~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg 455 (826)
+..||+..+.|+..... ..++|-+|++++-.......+ +...+..++|||||
T Consensus 392 sL~Wsk~~kEi~sthG~---------s~n~i~lw~~ps~~~~~~l~g-------------------H~~RVl~la~SPdg 443 (484)
T KOG0305|consen 392 SLIWSKKYKELLSTHGY---------SENQITLWKYPSMKLVAELLG-------------------HTSRVLYLALSPDG 443 (484)
T ss_pred eEEEcCCCCEEEEecCC---------CCCcEEEEeccccceeeeecC-------------------CcceeEEEEECCCC
Confidence 99999999999876633 335777787777332211111 12235578899999
Q ss_pred CEEEEEEEeCCeEEEEEE
Q 003363 456 CTMLLSSIWGSSQVIISV 473 (826)
Q Consensus 456 ~~l~~~~~~~~~~~l~~v 473 (826)
..|+.. ..+.+.++|.+
T Consensus 444 ~~i~t~-a~DETlrfw~~ 460 (484)
T KOG0305|consen 444 ETIVTG-AADETLRFWNL 460 (484)
T ss_pred CEEEEe-cccCcEEeccc
Confidence 977544 33445555654
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.7e-06 Score=95.14 Aligned_cols=208 Identities=13% Similarity=0.115 Sum_probs=122.7
Q ss_pred ccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc--eEe
Q 003363 210 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQA 287 (826)
Q Consensus 210 ~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~--~~~ 287 (826)
+..+.|||||++|||..... +....+|++.|+.+|+ ...
T Consensus 129 l~~~~~Spdg~~la~~~d~~---------------------------------------G~E~~~l~v~d~~tg~~l~~~ 169 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFL---------------------------------------SRRQYGIRFRNLETGNWYPEL 169 (686)
T ss_pred EeEEEECCCCCEEEEEecCC---------------------------------------CcEEEEEEEEECCCCCCCCcc
Confidence 36789999999999985543 1245789999999987 333
Q ss_pred ccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCC--cce
Q 003363 288 VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PVV 365 (826)
Q Consensus 288 l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~~ 365 (826)
+. . .. ..++|++||+. |+|+..... ..++.+||+.++ .++ +.+
T Consensus 170 i~---~-~~-~~~~w~~D~~~----~~y~~~~~~---------~~~~~~v~~h~l-----------------gt~~~~d~ 214 (686)
T PRK10115 170 LD---N-VE-PSFVWANDSWT----FYYVRKHPV---------TLLPYQVWRHTI-----------------GTPASQDE 214 (686)
T ss_pred cc---C-cc-eEEEEeeCCCE----EEEEEecCC---------CCCCCEEEEEEC-----------------CCChhHCe
Confidence 32 1 11 45899999999 999886321 124568999998 555 344
Q ss_pred ecCCCC-cccc-CceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCC--CCCCCCcccceeeeeeeeeccCCCCCccc
Q 003363 366 NLTESI-SSAF-FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP--TNGNFSSLEKIVDVIPVVQCAEGDCFPGL 441 (826)
Q Consensus 366 ~Lt~~~-~~~~-~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~g~ 441 (826)
.|..+. .... ....+.||++++..+... ....+++++.+ .+..+. +...+.+..+
T Consensus 215 lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~--------~~~~~~l~~~~~~~~~~~~----------~~~~~~~~~~--- 273 (686)
T PRK10115 215 LVYEEKDDTFYVSLHKTTSKHYVVIHLASA--------TTSEVLLLDAELADAEPFV----------FLPRRKDHEY--- 273 (686)
T ss_pred EEEeeCCCCEEEEEEEcCCCCEEEEEEECC--------ccccEEEEECcCCCCCceE----------EEECCCCCEE---
Confidence 454432 2122 223355999987554442 23567777742 322111 1111111111
Q ss_pred ccCCCCCCccccCCCEEEEEEEeC-CeEEEEEEECC-CCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEe
Q 003363 442 YSSSILSNPWLSDGCTMLLSSIWG-SSQVIISVNVS-SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 519 (826)
Q Consensus 442 ~~~~~~~~~ws~Dg~~l~~~~~~~-~~~~l~~vdl~-tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~ 519 (826)
.....+..+++.++.+ .+..|+.+++. .++.+.|.+.........+...++.+++.......+ ++++++
T Consensus 274 --------~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~-~l~~~~ 344 (686)
T PRK10115 274 --------SLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLT-SLRQIN 344 (686)
T ss_pred --------EEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEE-EEEEEc
Confidence 1112235677777654 56689999987 566677766633223334555577777776654443 377766
Q ss_pred ec
Q 003363 520 FV 521 (826)
Q Consensus 520 ~~ 521 (826)
+.
T Consensus 345 ~~ 346 (686)
T PRK10115 345 RK 346 (686)
T ss_pred CC
Confidence 53
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1e-06 Score=91.82 Aligned_cols=235 Identities=14% Similarity=0.129 Sum_probs=136.4
Q ss_pred ceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccc
Q 003363 125 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHG 202 (826)
Q Consensus 125 ~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g 202 (826)
-...+.+|.+-..+.-.+.+.... ..+....||.+|..++..+-+. .+.+|+ .|+....+.+..-.
T Consensus 235 mD~~vklW~vy~~~~~lrtf~gH~-----k~Vrd~~~s~~g~~fLS~sfD~-----~lKlwDtETG~~~~~f~~~~~~-- 302 (503)
T KOG0282|consen 235 MDGLVKLWNVYDDRRCLRTFKGHR-----KPVRDASFNNCGTSFLSASFDR-----FLKLWDTETGQVLSRFHLDKVP-- 302 (503)
T ss_pred CCceEEEEEEecCcceehhhhcch-----hhhhhhhccccCCeeeeeecce-----eeeeeccccceEEEEEecCCCc--
Confidence 344455555544444344333332 4588999999999998876553 677884 45544444444444
Q ss_pred cccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccC
Q 003363 203 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS 282 (826)
Q Consensus 203 ~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~ 282 (826)
..+.+.||+..++++.. .+..|..||+.+
T Consensus 303 --------~cvkf~pd~~n~fl~G~-------------------------------------------sd~ki~~wDiRs 331 (503)
T KOG0282|consen 303 --------TCVKFHPDNQNIFLVGG-------------------------------------------SDKKIRQWDIRS 331 (503)
T ss_pred --------eeeecCCCCCcEEEEec-------------------------------------------CCCcEEEEeccc
Confidence 78999999988888632 336688899988
Q ss_pred CceEeccCCCCCC-ccceEEEeeCCCCCccEEEEEeecCcceeee----------------------------eeeeccC
Q 003363 283 GEVQAVKGIPKSL-SVGQVVWAPLNEGLHQYLVFVGWSSETRKLG----------------------------IKYCYNR 333 (826)
Q Consensus 283 g~~~~l~~~~~~~-~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g----------------------------~~~~~~~ 333 (826)
|++.+- ...++ .+..+.|-|+|++ .+.++.+...+-+. +..|.+-
T Consensus 332 ~kvvqe--Yd~hLg~i~~i~F~~~g~r----FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~ 405 (503)
T KOG0282|consen 332 GKVVQE--YDRHLGAILDITFVDEGRR----FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM 405 (503)
T ss_pred hHHHHH--HHhhhhheeeeEEccCCce----EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc
Confidence 886554 34443 4557788888888 66555433211111 1112222
Q ss_pred CCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC--CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeC
Q 003363 334 PCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 411 (826)
Q Consensus 334 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~--~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~ 411 (826)
.+.|++..+... -.-...++...+ .|......|||||.+|+..+.+ ..++.|||
T Consensus 406 dN~i~ifs~~~~-------------~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsd-----------G~v~~wdw 461 (503)
T KOG0282|consen 406 DNYIAIFSTVPP-------------FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD-----------GKVNFWDW 461 (503)
T ss_pred CceEEEEecccc-------------cccCHhhhhcceeccCceeeEEEcCCCCeEEeecCC-----------ccEEEeec
Confidence 233443332000 000111122222 4556788999999999866654 46999999
Q ss_pred CCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003363 412 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (826)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (826)
.+-.........+. -...+.|.|-....+.+..+.|...+|
T Consensus 462 kt~kl~~~lkah~~-------------------~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 462 KTTKLVSKLKAHDQ-------------------PCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred hhhhhhhccccCCc-------------------ceEEEEecCCCcceeEecccCceeEec
Confidence 88554322222111 122456777666666777777766555
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-05 Score=82.07 Aligned_cols=236 Identities=16% Similarity=0.175 Sum_probs=136.5
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeec-CCCCeEEEEeecCCCCCCCc
Q 003363 158 AVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWN-SDETLIAYVAEEPSPSKPTF 236 (826)
Q Consensus 158 ~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wS-PDg~~ia~~~~~~~~~~~~~ 236 (826)
.|+|.++...|+|+.-. ..+++.+...+....+...+. . .++.+. +||+ |+....
T Consensus 4 gp~~d~~~g~l~~~D~~---~~~i~~~~~~~~~~~~~~~~~-~----------~G~~~~~~~g~-l~v~~~--------- 59 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIP---GGRIYRVDPDTGEVEVIDLPG-P----------NGMAFDRPDGR-LYVADS--------- 59 (246)
T ss_dssp EEEEETTTTEEEEEETT---TTEEEEEETTTTEEEEEESSS-E----------EEEEEECTTSE-EEEEET---------
T ss_pred ceEEECCCCEEEEEEcC---CCEEEEEECCCCeEEEEecCC-C----------ceEEEEccCCE-EEEEEc---------
Confidence 58999977788887543 236888775555555555544 3 466777 6654 444321
Q ss_pred cCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCC---C-CCCccceEEEeeCCCCCccE
Q 003363 237 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI---P-KSLSVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~---~-~~~~~~~~~wSPDg~~~~~~ 312 (826)
..+.++|+.+++++.+... . ......++++.|||+
T Consensus 60 ------------------------------------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~----- 98 (246)
T PF08450_consen 60 ------------------------------------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN----- 98 (246)
T ss_dssp ------------------------------------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS------
T ss_pred ------------------------------------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-----
Confidence 3355669999988776311 1 234667899999998
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
|+|+........ ......||+++. + ++...+...........|||||+.|++....
T Consensus 99 ly~t~~~~~~~~------~~~~g~v~~~~~-----------------~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 99 LYVTDSGGGGAS------GIDPGSVYRIDP-----------------D-GKVTVVADGLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EEEEEECCBCTT------CGGSEEEEEEET-----------------T-SEEEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred EEEEecCCCccc------cccccceEEECC-----------------C-CeEEEEecCcccccceEECCcchheeecccc
Confidence 777653222100 000147999996 5 6666665555556789999999988776644
Q ss_pred CCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003363 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (826)
...|++++++....... ....+...+.... ....+++..+|+ |+++.. +...|++
T Consensus 155 ----------~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~g-------~pDG~~vD~~G~-l~va~~--~~~~I~~ 209 (246)
T PF08450_consen 155 ----------NGRIWRFDLDADGGELS-----NRRVFIDFPGGPG-------YPDGLAVDSDGN-LWVADW--GGGRIVV 209 (246)
T ss_dssp ----------TTEEEEEEEETTTCCEE-----EEEEEEE-SSSSC-------EEEEEEEBTTS--EEEEEE--TTTEEEE
T ss_pred ----------cceeEEEecccccccee-----eeeeEEEcCCCCc-------CCCcceEcCCCC-EEEEEc--CCCEEEE
Confidence 35699999875433110 0111111111100 123567888886 655432 4457888
Q ss_pred EECCCCcEEEecCCCCCeeeEEEe-ecCCEEEEEEe
Q 003363 473 VNVSSGELLRITPAESNFSWSLLT-LDGDNIIAVSS 507 (826)
Q Consensus 473 vdl~tg~~~~lt~~~~~~~~~~~s-~dg~~l~~~~s 507 (826)
+|.++..+..+...........|. ++.+.|+++.+
T Consensus 210 ~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 210 FDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred ECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 898744455555443345555663 46677776654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.9e-06 Score=92.01 Aligned_cols=267 Identities=15% Similarity=0.177 Sum_probs=164.5
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecC-CCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
.....|| ....||..... -..+| ..+....+.+.. ..+ ..+.|++||+.||.....+...
T Consensus 180 ~nlldWs-s~n~laValg~------~vylW~~~s~~v~~l~~~~~~~v----------tSv~ws~~G~~LavG~~~g~v~ 242 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVALGQ------SVYLWSASSGSVTELCSFGEELV----------TSVKWSPDGSHLAVGTSDGTVQ 242 (484)
T ss_pred hhHhhcc-cCCeEEEEecc------eEEEEecCCCceEEeEecCCCce----------EEEEECCCCCEEEEeecCCeEE
Confidence 4567889 45566664332 24566 456667777652 222 7999999999999988776543
Q ss_pred CCCccCCCCCCCCCCcc-CCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 233 KPTFSLGSTKGGSSDKD-CNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
.|+....+....... +....+..+|... ....+.+...|...|+...+...-+-......+-...|++|++.
T Consensus 243 --iwD~~~~k~~~~~~~~h~~rvg~laW~~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~--- 315 (484)
T KOG0305|consen 243 --IWDVKEQKKTRTLRGSHASRVGSLAWNSS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ--- 315 (484)
T ss_pred --EEehhhccccccccCCcCceeEEEeccCc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe---
Confidence 334222222222222 4444555555532 34456677889999987654221110233446778899999999
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEec
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~ 391 (826)
++-.+ .++.++++|.. .......++.+...+...+|+|=-+-|+-+..
T Consensus 316 -lASGg---------------nDN~~~Iwd~~----------------~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG 363 (484)
T KOG0305|consen 316 -LASGG---------------NDNVVFIWDGL----------------SPEPKFTFTEHTAAVKALAWCPWQSGLLATGG 363 (484)
T ss_pred -eccCC---------------CccceEeccCC----------------CccccEEEeccceeeeEeeeCCCccCceEEcC
Confidence 87766 33367777762 45567788889899999999997665553332
Q ss_pred cCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC-CeEEE
Q 003363 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-SSQVI 470 (826)
Q Consensus 392 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~-~~~~l 470 (826)
+.....|+.||..++....... .+..+.++.|++..+.|+.+.... ....|
T Consensus 364 --------Gs~D~~i~fwn~~~g~~i~~vd--------------------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~l 415 (484)
T KOG0305|consen 364 --------GSADRCIKFWNTNTGARIDSVD--------------------TGSQVCSLIWSKKYKELLSTHGYSENQITL 415 (484)
T ss_pred --------CCcccEEEEEEcCCCcEecccc--------------------cCCceeeEEEcCCCCEEEEecCCCCCcEEE
Confidence 2345689999988766532111 112456889999999887665433 34456
Q ss_pred EEEECCCCc-EEEecCCCCCeeeEEEeecCCEEEEEEeC
Q 003363 471 ISVNVSSGE-LLRITPAESNFSWSLLTLDGDNIIAVSSS 508 (826)
Q Consensus 471 ~~vdl~tg~-~~~lt~~~~~~~~~~~s~dg~~l~~~~s~ 508 (826)
|.+. +.+ +..+.....-+-...++|||..++..+.+
T Consensus 416 w~~p--s~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 416 WKYP--SMKLVAELLGHTSRVLYLALSPDGETIVTGAAD 452 (484)
T ss_pred Eecc--ccceeeeecCCcceeEEEEECCCCCEEEEeccc
Confidence 6654 433 33444444445556788888766655543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-05 Score=84.53 Aligned_cols=262 Identities=13% Similarity=0.083 Sum_probs=134.4
Q ss_pred CCCCcceEEEEEee-chhhcccceeEEEEEEeecCCCCccceeecCCcc--eecccEEEEeCCCCCeEEEEecCCCCCCe
Q 003363 104 GNGNGTQAMFSISQ-PNLLANKRKKFMLSTVISKENENSVTFQWAPFPV--EMTGASAVVPSPSGSKLLVVRNPENESPI 180 (826)
Q Consensus 104 ~s~dg~~v~~~~~~-~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~--~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 180 (826)
.||||+.+.....- .-+..++..-.+.++++.+. .....+...+-|- ........++||||++|++.... ....
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~-~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~--p~~~ 129 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH-LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS--PSPA 129 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccC-cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC--CCCE
Confidence 48999988554431 11233444456666665322 1122222211000 01224478999999998755322 2345
Q ss_pred EEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC----CCccCCCCCCCCCCccCCCCCC
Q 003363 181 QFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK----PTFSLGSTKGGSSDKDCNSWKG 255 (826)
Q Consensus 181 ~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 255 (826)
+-.++ ..++....+.++...+ +|.-..-.....+.||+.+.+..+...... +.|.. .......+.
T Consensus 130 V~VvD~~~~kvv~ei~vp~~~~--vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~----~~~~v~~rP---- 199 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDVPDCYH--IFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHP----EDEYLINHP---- 199 (352)
T ss_pred EEEEECCCCcEEEEEeCCCCcE--EEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecC----CccccccCC----
Confidence 66666 5566666666654432 222221233356789987775544332210 00000 000000011
Q ss_pred cceeec-CCCccCCCccCceEEEEEccCCceEeccC----C----CCCCccc---eEEEeeCCCCCccEEEEEeecCcce
Q 003363 256 QGDWEE-DWGETYAGKRQPSLFVININSGEVQAVKG----I----PKSLSVG---QVVWAPLNEGLHQYLVFVGWSSETR 323 (826)
Q Consensus 256 ~~~~~~-d~g~~~~~~~~~~l~v~d~~~g~~~~l~~----~----~~~~~~~---~~~wSPDg~~~~~~lvf~~~~~~~~ 323 (826)
.|.+ |....|.... ..|+++|+.+.++..... . +..+..+ .++++|||+. ++.......
T Consensus 200 --~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~----lyV~~~~~~-- 270 (352)
T TIGR02658 200 --AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR----IYLLADQRA-- 270 (352)
T ss_pred --ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE----EEEEecCCc--
Confidence 2233 3233333323 889999976655443310 0 1122222 3899999997 655342111
Q ss_pred eeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCccc
Q 003363 324 KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSAT 403 (826)
Q Consensus 324 ~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~ 403 (826)
+... ......|+.+|. .+++...--.-........+||||+.++|..+.. .
T Consensus 271 ~~th---k~~~~~V~ViD~-----------------~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~---------s 321 (352)
T TIGR02658 271 KWTH---KTASRFLFVVDA-----------------KTGKRLRKIELGHEIDSINVSQDAKPLLYALSTG---------D 321 (352)
T ss_pred cccc---cCCCCEEEEEEC-----------------CCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCC---------C
Confidence 1111 112348999998 6665433222234577889999999677777653 2
Q ss_pred ceEEEEeCCCCCC
Q 003363 404 DSLHRIDWPTNGN 416 (826)
Q Consensus 404 ~~l~~~d~~~~~~ 416 (826)
+.|.++|..+++.
T Consensus 322 ~~VsViD~~t~k~ 334 (352)
T TIGR02658 322 KTLYIFDAETGKE 334 (352)
T ss_pred CcEEEEECcCCeE
Confidence 5699999888654
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.4e-06 Score=98.67 Aligned_cols=100 Identities=18% Similarity=0.117 Sum_probs=67.7
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhh-------hcCCC------------CCCcc
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL-------QSLPG------------KVGSQ 650 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~-------~~~~~------------~~~~~ 650 (826)
...|+||++||.... ...|...+..|+++||.|+++|+||++....... ..... +...+
T Consensus 447 ~g~P~VVllHG~~g~--~~~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ 524 (792)
T TIGR03502 447 DGWPVVIYQHGITGA--KENALAFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLRQ 524 (792)
T ss_pred CCCcEEEEeCCCCCC--HHHHHHHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHHH
Confidence 346899999996544 4467788889999999999999999654422100 00000 01123
Q ss_pred hHHHHHHHHHHHH------Hc----CCCCCCcEEEEEecchHHHHHHHHHh
Q 003363 651 DVNDVLTAIDHVI------DM----GLANPSKVTVVGGSHGGFLTTHLIGQ 691 (826)
Q Consensus 651 ~~~D~~~~i~~l~------~~----~~~d~~rv~l~G~S~GG~~a~~~a~~ 691 (826)
.+.|+......+. +. ...+..+|.++||||||.++..++..
T Consensus 525 ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 525 SILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred HHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 3567766666655 11 12556899999999999999998875
|
Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-05 Score=84.58 Aligned_cols=242 Identities=14% Similarity=0.173 Sum_probs=142.7
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecC-CCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
...+.|||-|.+|+..-.++ +.+|.+....++-... .++ .-+.|||.+++|+.-+..+....+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G------I~lWGG~~f~r~~RF~Hp~V----------q~idfSP~EkYLVT~s~~p~~~~~ 276 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG------IALWGGESFDRIQRFYHPGV----------QFIDFSPNEKYLVTYSPEPIIVEE 276 (698)
T ss_pred eeeEEecCCceEEEEEeccc------eeeecCccHHHHHhccCCCc----------eeeecCCccceEEEecCCccccCc
Confidence 67899999999999887766 7789655433332221 233 678899999999876654422100
Q ss_pred CccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCC--ccceEEEeeCCCCCccE
Q 003363 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL--SVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~--~~~~~~wSPDg~~~~~~ 312 (826)
+ .....+|++||+.+|...+-..+..+. .-.-+.||-|+|+
T Consensus 277 -----------------------------~----d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy---- 319 (698)
T KOG2314|consen 277 -----------------------------D----DNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKY---- 319 (698)
T ss_pred -----------------------------c----cCCCceEEEEEccccchhcceeccCCCccccceEEeccCCce----
Confidence 0 013368999999999876542222121 2224689999998
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
++-..- ..|-+++.+ .-.....-+-....+....|||-++.|||-+..
T Consensus 320 ~Arm~~----------------~sisIyEtp----------------sf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 320 FARMTG----------------NSISIYETP----------------SFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred eEEecc----------------ceEEEEecC----------------ceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 665441 134444431 000000001123356788999999999998877
Q ss_pred CCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCC------
Q 003363 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS------ 466 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~------ 466 (826)
.+ +...++-++.++++...+. .++..+.. ..+.|-.+|.+|.+...+..
T Consensus 368 ~~------~~parvtL~evPs~~~iRt----~nlfnVsD---------------ckLhWQk~gdyLcvkvdR~tK~~~~g 422 (698)
T KOG2314|consen 368 TN------NIPARVTLMEVPSKREIRT----KNLFNVSD---------------CKLHWQKSGDYLCVKVDRHTKSKVKG 422 (698)
T ss_pred cc------CCcceEEEEecCccceeee----ccceeeec---------------cEEEeccCCcEEEEEEEeeccccccc
Confidence 53 2335677777777654321 12333322 36679999999988876542
Q ss_pred ---eEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeC
Q 003363 467 ---SQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 508 (826)
Q Consensus 467 ---~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~ 508 (826)
+..|++++-..=-+..+.-... +-.-.|-|.|+.+..+...
T Consensus 423 ~f~n~eIfrireKdIpve~velke~-vi~FaWEP~gdkF~vi~g~ 466 (698)
T KOG2314|consen 423 QFSNLEIFRIREKDIPVEVVELKES-VIAFAWEPHGDKFAVISGN 466 (698)
T ss_pred eEeeEEEEEeeccCCCceeeecchh-eeeeeeccCCCeEEEEEcc
Confidence 2356666533222222222222 3334678889887766544
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-05 Score=97.48 Aligned_cols=196 Identities=15% Similarity=0.169 Sum_probs=116.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCce--------eEEEecCCCccccccCCCcccceeecCC-CCeEEE
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL--------EKEFHVPQTVHGSVYADGWFEGISWNSD-ETLIAY 224 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~g~v~~~~~~~~~~wSPD-g~~ia~ 224 (826)
..+...+|+|||++||.....+ .+.+|+.... ....... .+. .+..+.|+|. ++.||.
T Consensus 484 ~~V~~i~fs~dg~~latgg~D~-----~I~iwd~~~~~~~~~~~~~~~~~~~--~~~------~v~~l~~~~~~~~~las 550 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAGVNK-----KIKIFECESIIKDGRDIHYPVVELA--SRS------KLSGICWNSYIKSQVAS 550 (793)
T ss_pred CcEEEEEECCCCCEEEEEeCCC-----EEEEEECCcccccccccccceEEec--ccC------ceeeEEeccCCCCEEEE
Confidence 3478899999999998865433 4566732110 0011111 112 2378899875 677777
Q ss_pred EeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCc-cCCCccCceEEEEEccCCceEeccCCCCCCccceEEEe
Q 003363 225 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGE-TYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWA 303 (826)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~-~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wS 303 (826)
.+.+.... .|+............+...+....|.+.-+. .+++..+..|.+||+.+++.... ......+..+.|+
T Consensus 551 ~~~Dg~v~--lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~--~~~~~~v~~v~~~ 626 (793)
T PLN00181 551 SNFEGVVQ--VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT--IKTKANICCVQFP 626 (793)
T ss_pred EeCCCeEE--EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE--EecCCCeEEEEEe
Confidence 76665443 3443222222333445555556677753233 45566678999999988765432 2222345677885
Q ss_pred -eCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCC-cceecCCCCccccCceecC
Q 003363 304 -PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSP 381 (826)
Q Consensus 304 -PDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~Lt~~~~~~~~p~~Sp 381 (826)
++|+. |+..+ .+..|+.+|+. ... ....+..+...+....|+
T Consensus 627 ~~~g~~----latgs---------------~dg~I~iwD~~----------------~~~~~~~~~~~h~~~V~~v~f~- 670 (793)
T PLN00181 627 SESGRS----LAFGS---------------ADHKVYYYDLR----------------NPKLPLCTMIGHSKTVSYVRFV- 670 (793)
T ss_pred CCCCCE----EEEEe---------------CCCeEEEEECC----------------CCCccceEecCCCCCEEEEEEe-
Confidence 56776 66655 33478899972 112 234455566667788887
Q ss_pred CCCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 382 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 382 DG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
|+..|+..+.+ ..|.+||+..
T Consensus 671 ~~~~lvs~s~D-----------~~ikiWd~~~ 691 (793)
T PLN00181 671 DSSTLVSSSTD-----------NTLKLWDLSM 691 (793)
T ss_pred CCCEEEEEECC-----------CEEEEEeCCC
Confidence 78877765543 3588888765
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.9e-07 Score=99.78 Aligned_cols=192 Identities=15% Similarity=0.094 Sum_probs=118.2
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccC-CCccCceEEEEEccCCceEecc
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY-AGKRQPSLFVININSGEVQAVK 289 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~-~~~~~~~l~v~d~~~g~~~~l~ 289 (826)
.+.+||||.+.|+-.+++.+.+.|... .....-....+...+..+.|.|. |-.+ +...+..--+|..+...+.++
T Consensus 455 yg~sFsPd~rfLlScSED~svRLWsl~--t~s~~V~y~GH~~PVwdV~F~P~-GyYFatas~D~tArLWs~d~~~PlRi- 530 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRLWSLD--TWSCLVIYKGHLAPVWDVQFAPR-GYYFATASHDQTARLWSTDHNKPLRI- 530 (707)
T ss_pred eeeeecccccceeeccCCcceeeeecc--cceeEEEecCCCcceeeEEecCC-ceEEEecCCCceeeeeecccCCchhh-
Confidence 789999999999999999887754333 22222222333333334445555 3322 222334445566555666666
Q ss_pred CCCCCC-ccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecC
Q 003363 290 GIPKSL-SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT 368 (826)
Q Consensus 290 ~~~~~~-~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt 368 (826)
..+++ .++-+.|.|++.+ ++-.+ .+..+..+|+. .+..+|..+
T Consensus 531 -faghlsDV~cv~FHPNs~Y----~aTGS---------------sD~tVRlWDv~----------------~G~~VRiF~ 574 (707)
T KOG0263|consen 531 -FAGHLSDVDCVSFHPNSNY----VATGS---------------SDRTVRLWDVS----------------TGNSVRIFT 574 (707)
T ss_pred -hcccccccceEEECCcccc----cccCC---------------CCceEEEEEcC----------------CCcEEEEec
Confidence 34444 5667899999996 54443 12256667761 334455556
Q ss_pred CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCC
Q 003363 369 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 448 (826)
Q Consensus 369 ~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~ 448 (826)
++.+.+...+|||+|++|+-.+.+ ..|.+||+.++.......+.. ..+.+
T Consensus 575 GH~~~V~al~~Sp~Gr~LaSg~ed-----------~~I~iWDl~~~~~v~~l~~Ht-------------------~ti~S 624 (707)
T KOG0263|consen 575 GHKGPVTALAFSPCGRYLASGDED-----------GLIKIWDLANGSLVKQLKGHT-------------------GTIYS 624 (707)
T ss_pred CCCCceEEEEEcCCCceEeecccC-----------CcEEEEEcCCCcchhhhhccc-------------------CceeE
Confidence 778889999999999999866654 458999998876643222221 24558
Q ss_pred CccccCCCEEEEEEEeCCeEEEEEEEC
Q 003363 449 NPWLSDGCTMLLSSIWGSSQVIISVNV 475 (826)
Q Consensus 449 ~~ws~Dg~~l~~~~~~~~~~~l~~vdl 475 (826)
+.||.||..| ++...+....+| |+
T Consensus 625 lsFS~dg~vL-asgg~DnsV~lW--D~ 648 (707)
T KOG0263|consen 625 LSFSRDGNVL-ASGGADNSVRLW--DL 648 (707)
T ss_pred EEEecCCCEE-EecCCCCeEEEE--Ec
Confidence 8899999844 444434445555 54
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.3e-05 Score=77.98 Aligned_cols=293 Identities=16% Similarity=0.153 Sum_probs=144.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecC-CCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
++.++.+|||||+.|+..++-. -.+.+| ...+..-.+..+ .+. .+++|.|||+.-|..+.+.=
T Consensus 92 agls~~~WSPdgrhiL~tseF~----lriTVWSL~t~~~~~~~~pK~~~----------kg~~f~~dg~f~ai~sRrDC- 156 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFD----LRITVWSLNTQKGYLLPHPKTNV----------KGYAFHPDGQFCAILSRRDC- 156 (447)
T ss_pred CcceeeeECCCcceEeeeecce----eEEEEEEeccceeEEecccccCc----------eeEEECCCCceeeeeecccH-
Confidence 4688999999999998876543 235666 222222233222 222 58999999998887765421
Q ss_pred CCCCccCCCCC---CCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCC
Q 003363 232 SKPTFSLGSTK---GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308 (826)
Q Consensus 232 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~ 308 (826)
+.+......+ ..+..+-...--....|+||. .-|.|||.-- +.+.+ ......++-.+.|||-++.
T Consensus 157 -kdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg---------~~laVwd~~L-eykv~-aYe~~lG~k~v~wsP~~qf 224 (447)
T KOG4497|consen 157 -KDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG---------NWLAVWDNVL-EYKVY-AYERGLGLKFVEWSPCNQF 224 (447)
T ss_pred -HHHHHHHhhHHHHHHHhcCCCcccccCceECCCC---------cEEEEecchh-hheee-eeeeccceeEEEeccccce
Confidence 1011000000 000000001111245688873 5688887321 22211 0233456778899999987
Q ss_pred CccEEEEEeecCcceeee-eee-eccCCCceEEEEcc------------------------------cc--cchhhhhhh
Q 003363 309 LHQYLVFVGWSSETRKLG-IKY-CYNRPCALYAVRVS------------------------------LY--KSEASELEL 354 (826)
Q Consensus 309 ~~~~lvf~~~~~~~~~~g-~~~-~~~~~~~l~~~d~~------------------------------~~--~~~~~~~~~ 354 (826)
|+..+.+.--|-+. ..+ .+....++..+..+ .. ++-.++.+.
T Consensus 225 ----lavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~ 300 (447)
T KOG4497|consen 225 ----LAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQM 300 (447)
T ss_pred ----EEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhh
Confidence 77766543211110 000 00000011111100 00 000000000
Q ss_pred hcCCCCCCcceecC---CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeee
Q 003363 355 KESSSEDLPVVNLT---ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 431 (826)
Q Consensus 355 ~~~~~~~~~~~~Lt---~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 431 (826)
. ...-...+..| +..-.+...+||+|..+++..... -.+.||+||++.-+...+.... .
T Consensus 301 ~--pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~---------~PnalW~Wdlq~l~l~avLiQk---~---- 362 (447)
T KOG4497|consen 301 T--PVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDK---------YPNALWLWDLQNLKLHAVLIQK---H---- 362 (447)
T ss_pred c--ceeeecccCCCCCCCcccccceeeecCCceEEeeecCC---------CCceEEEEechhhhhhhhhhhc---c----
Confidence 0 00000011111 123346778999999887644332 2367999998774432211111 0
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCC
Q 003363 432 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVD 511 (826)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~ 511 (826)
.+..+.|.|.--.|++- .+..+||.+-+.+-.........-.+....|..+|..++....+.-.
T Consensus 363 -------------piraf~WdP~~prL~vc---tg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 363 -------------PIRAFEWDPGRPRLVVC---TGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred -------------ceeEEEeCCCCceEEEE---cCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCceE
Confidence 12356788876667655 45667999988665444444443345555677778776666555433
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.7e-06 Score=87.45 Aligned_cols=228 Identities=14% Similarity=0.097 Sum_probs=138.6
Q ss_pred EEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCC
Q 003363 99 WTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENES 178 (826)
Q Consensus 99 ~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~ 178 (826)
..--.|+.||..+++ +....++.+|.. .+.....|.... +.+....|+.+|.+|+-..-.+
T Consensus 238 VT~L~Wn~~G~~Lat---------G~~~G~~riw~~--~G~l~~tl~~Hk-----gPI~slKWnk~G~yilS~~vD~--- 298 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLAT---------GSEDGEARIWNK--DGNLISTLGQHK-----GPIFSLKWNKKGTYILSGGVDG--- 298 (524)
T ss_pred cceEEecCCCCeEEE---------eecCcEEEEEec--CchhhhhhhccC-----CceEEEEEcCCCCEEEeccCCc---
Confidence 334455666666655 345667777764 333333443343 4588999999999998754322
Q ss_pred CeEEEEec--CCceeEEEecC--------------------------------------CCccccccCCCcccceeecCC
Q 003363 179 PIQFELWS--QSQLEKEFHVP--------------------------------------QTVHGSVYADGWFEGISWNSD 218 (826)
Q Consensus 179 ~~~~~i~~--~~~~~~~~~~~--------------------------------------~~~~g~v~~~~~~~~~~wSPD 218 (826)
...+|+ .++..+.+.+. .+.||.| ..+.|.|-
T Consensus 299 --ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V------~alk~n~t 370 (524)
T KOG0273|consen 299 --TTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEV------NALKWNPT 370 (524)
T ss_pred --cEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCce------EEEEECCC
Confidence 333442 12222211110 1233444 88999999
Q ss_pred CCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCcc---------CCCccCceEEEEEccCCceEecc
Q 003363 219 ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGET---------YAGKRQPSLFVININSGEVQAVK 289 (826)
Q Consensus 219 g~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~---------~~~~~~~~l~v~d~~~g~~~~l~ 289 (826)
|+.|+..+.+.+.+ .|.............+..-++...|+|+..-. +....+..+.+||+..|......
T Consensus 371 g~LLaS~SdD~Tlk--iWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f 448 (524)
T KOG0273|consen 371 GSLLASCSDDGTLK--IWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL 448 (524)
T ss_pred CceEEEecCCCeeE--eeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee
Confidence 99999998888765 33322222233333344333344455543111 12234577889999988765442
Q ss_pred CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCC
Q 003363 290 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE 369 (826)
Q Consensus 290 ~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~ 369 (826)
..+...+.+++|||||++ |++.+ +..-+..++. .+++..+-..
T Consensus 449 -~kH~~pVysvafS~~g~y----lAsGs---------------~dg~V~iws~-----------------~~~~l~~s~~ 491 (524)
T KOG0273|consen 449 -MKHQEPVYSVAFSPNGRY----LASGS---------------LDGCVHIWST-----------------KTGKLVKSYQ 491 (524)
T ss_pred -ccCCCceEEEEecCCCcE----EEecC---------------CCCeeEeccc-----------------cchheeEeec
Confidence 456668889999999999 88876 3335667776 5666665555
Q ss_pred CCccccCceecCCCCEEEEEecc
Q 003363 370 SISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 370 ~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
+.+.++...|+.+|.+|.-...+
T Consensus 492 ~~~~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 492 GTGGIFELCWNAAGDKLGACASD 514 (524)
T ss_pred CCCeEEEEEEcCCCCEEEEEecC
Confidence 66778999999999988755544
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.3e-06 Score=91.23 Aligned_cols=240 Identities=14% Similarity=0.122 Sum_probs=145.1
Q ss_pred cccEEEEeCC-CCCeEEEEecCCCCCCeEEEEecCCceeEEEec-CCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
.++++..|.| .|..|+-... ++.-.+|.++..+...+.+.. ...+ ..++||++|+.+...+.+
T Consensus 215 kgvsai~~fp~~~hLlLS~gm--D~~vklW~vy~~~~~lrtf~gH~k~V----------rd~~~s~~g~~fLS~sfD--- 279 (503)
T KOG0282|consen 215 KGVSAIQWFPKKGHLLLSGGM--DGLVKLWNVYDDRRCLRTFKGHRKPV----------RDASFNNCGTSFLSASFD--- 279 (503)
T ss_pred cccchhhhccceeeEEEecCC--CceEEEEEEecCcceehhhhcchhhh----------hhhhccccCCeeeeeecc---
Confidence 5789999999 6655544322 244556666654444443321 2233 799999999999887654
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
..|.+||+++|++..- ...+-.+..+.|.||+..
T Consensus 280 -----------------------------------------~~lKlwDtETG~~~~~--f~~~~~~~cvkf~pd~~n--- 313 (503)
T KOG0282|consen 280 -----------------------------------------RFLKLWDTETGQVLSR--FHLDKVPTCVKFHPDNQN--- 313 (503)
T ss_pred -----------------------------------------eeeeeeccccceEEEE--EecCCCceeeecCCCCCc---
Confidence 4688899999988765 334445677899999977
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCccee-cCCCCccccCceecCCCCEEEEEe
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN-LTESISSAFFPRFSPDGKFLVFLS 390 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-Lt~~~~~~~~p~~SpDG~~l~f~s 390 (826)
+++++- .+..|..+|+ .++++.+ ...+.+.+....|-++|++++-.+
T Consensus 314 -~fl~G~--------------sd~ki~~wDi-----------------Rs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 314 -IFLVGG--------------SDKKIRQWDI-----------------RSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred -EEEEec--------------CCCcEEEEec-----------------cchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 888772 2347899998 5555433 344567788899999999987666
Q ss_pred ccCCCCCCCCcccceEEEEeCCCCCCCCcccce----------------------ee------eeeeeeccCCCCCcccc
Q 003363 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI----------------------VD------VIPVVQCAEGDCFPGLY 442 (826)
Q Consensus 391 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~----------------------~~------~~~~~~~~~~~~f~g~~ 442 (826)
.+. .+.+|++...-........ ++ +.+-........|.|..
T Consensus 362 Ddk-----------s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~ 430 (503)
T KOG0282|consen 362 DDK-----------SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS 430 (503)
T ss_pred cCc-----------cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee
Confidence 553 3556665554332111110 00 11111222334566644
Q ss_pred cCCC-CCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE-EecCCCCCeeeEEEeecCC
Q 003363 443 SSSI-LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RITPAESNFSWSLLTLDGD 500 (826)
Q Consensus 443 ~~~~-~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~-~lt~~~~~~~~~~~s~dg~ 500 (826)
..+. ..+.|||||++|+.. ++...++.+|..+-++. .+...........|.|-..
T Consensus 431 vaGys~~v~fSpDG~~l~SG---dsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~ 487 (503)
T KOG0282|consen 431 VAGYSCQVDFSPDGRTLCSG---DSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEP 487 (503)
T ss_pred ccCceeeEEEcCCCCeEEee---cCCccEEEeechhhhhhhccccCCcceEEEEecCCCc
Confidence 4333 367799999976533 45556777777665443 3333333333345555433
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-05 Score=80.67 Aligned_cols=159 Identities=14% Similarity=0.136 Sum_probs=105.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
..+...+.+|+...+|.- .+++...+|.+..+.....++ +...+| ....||.||..||..-
T Consensus 65 ~svFavsl~P~~~l~aTG--GgDD~AflW~~~~ge~~~elt----gHKDSV------t~~~FshdgtlLATGd------- 125 (399)
T KOG0296|consen 65 DSVFAVSLHPNNNLVATG--GGDDLAFLWDISTGEFAGELT----GHKDSV------TCCSFSHDGTLLATGD------- 125 (399)
T ss_pred CceEEEEeCCCCceEEec--CCCceEEEEEccCCcceeEec----CCCCce------EEEEEccCceEEEecC-------
Confidence 468899999966665542 222333333333333333333 233333 7999999999998741
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCC-CccceEEEeeCCCCCccE
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg~~~~~~ 312 (826)
-...|.|+...+|..+.. .... ....-+.|.|-+..
T Consensus 126 -------------------------------------msG~v~v~~~stg~~~~~--~~~e~~dieWl~WHp~a~i---- 162 (399)
T KOG0296|consen 126 -------------------------------------MSGKVLVFKVSTGGEQWK--LDQEVEDIEWLKWHPRAHI---- 162 (399)
T ss_pred -------------------------------------CCccEEEEEcccCceEEE--eecccCceEEEEecccccE----
Confidence 236788999888887655 3322 23456789997774
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
|++.+ .++.+|.+.++ ..+..+.+..+...+..-.|+||||+|+-...+
T Consensus 163 llAG~---------------~DGsvWmw~ip----------------~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 163 LLAGS---------------TDGSVWMWQIP----------------SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred EEeec---------------CCCcEEEEECC----------------CcceeeEecCCCCCcccccccCCCceEEEEecC
Confidence 44444 34578888884 336667777777788899999999999866654
Q ss_pred CCCCCCCCcccceEEEEeCCCCCC
Q 003363 393 SSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
..|.+||+.++..
T Consensus 212 -----------gti~~Wn~ktg~p 224 (399)
T KOG0296|consen 212 -----------GTIIVWNPKTGQP 224 (399)
T ss_pred -----------ceEEEEecCCCce
Confidence 4599999999865
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.7e-05 Score=79.03 Aligned_cols=139 Identities=16% Similarity=0.137 Sum_probs=78.6
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003363 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (826)
Q Consensus 102 ~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (826)
-..||+|++||... +..+.+.+. ..-+..+| -+....+...-|+-|.-+++-+...+ + .
T Consensus 14 c~fSp~g~yiAs~~----------~yrlviRd~--~tlq~~ql-----f~cldki~yieW~ads~~ilC~~yk~-~---~ 72 (447)
T KOG4497|consen 14 CSFSPCGNYIASLS----------RYRLVIRDS--ETLQLHQL-----FLCLDKIVYIEWKADSCHILCVAYKD-P---K 72 (447)
T ss_pred eeECCCCCeeeeee----------eeEEEEecc--chhhHHHH-----HHHHHHhhheeeeccceeeeeeeecc-c---e
Confidence 34589999998653 222333221 21122222 11234578889999998887765432 2 3
Q ss_pred EEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeec
Q 003363 182 FELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 261 (826)
Q Consensus 182 ~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (826)
..+|.-.+.+-......+..| +..++|||||++|...++-.
T Consensus 73 vqvwsl~Qpew~ckIdeg~ag-------ls~~~WSPdgrhiL~tseF~-------------------------------- 113 (447)
T KOG4497|consen 73 VQVWSLVQPEWYCKIDEGQAG-------LSSISWSPDGRHILLTSEFD-------------------------------- 113 (447)
T ss_pred EEEEEeecceeEEEeccCCCc-------ceeeeECCCcceEeeeecce--------------------------------
Confidence 445522222222222222211 26899999999999876532
Q ss_pred CCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEe
Q 003363 262 DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 317 (826)
Q Consensus 262 d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~ 317 (826)
-.|-||.+.+.+...+. .+. ..+..++|.|||+. .+..+
T Consensus 114 -----------lriTVWSL~t~~~~~~~-~pK-~~~kg~~f~~dg~f----~ai~s 152 (447)
T KOG4497|consen 114 -----------LRITVWSLNTQKGYLLP-HPK-TNVKGYAFHPDGQF----CAILS 152 (447)
T ss_pred -----------eEEEEEEeccceeEEec-ccc-cCceeEEECCCCce----eeeee
Confidence 45777777777666553 222 23456778888886 55554
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.2e-05 Score=76.75 Aligned_cols=286 Identities=13% Similarity=0.045 Sum_probs=160.0
Q ss_pred ceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEe-cCCCcc
Q 003363 125 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFH-VPQTVH 201 (826)
Q Consensus 125 ~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~-~~~~~~ 201 (826)
.+.++|... .+..+-.+|... ..+....||-||.+||...- ...+.+| ..+..+..+. .-...
T Consensus 86 D~AflW~~~---~ge~~~eltgHK-----DSVt~~~FshdgtlLATGdm-----sG~v~v~~~stg~~~~~~~~e~~di- 151 (399)
T KOG0296|consen 86 DLAFLWDIS---TGEFAGELTGHK-----DSVTCCSFSHDGTLLATGDM-----SGKVLVFKVSTGGEQWKLDQEVEDI- 151 (399)
T ss_pred ceEEEEEcc---CCcceeEecCCC-----CceEEEEEccCceEEEecCC-----CccEEEEEcccCceEEEeecccCce-
Confidence 355666643 333556666665 56899999999999987422 2245555 3333333332 11222
Q ss_pred ccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEcc
Q 003363 202 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 281 (826)
Q Consensus 202 g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 281 (826)
.=+.|.|-+..|++.+++.. .+.|........+....+..-..-+.|.||+...+.+..+..|.+||+.
T Consensus 152 ---------eWl~WHp~a~illAG~~DGs--vWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~k 220 (399)
T KOG0296|consen 152 ---------EWLKWHPRAHILLAGSTDGS--VWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPK 220 (399)
T ss_pred ---------EEEEecccccEEEeecCCCc--EEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecC
Confidence 56789998888887777664 3556554444445555666666778899996666777778999999999
Q ss_pred CCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCC
Q 003363 282 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 361 (826)
Q Consensus 282 ~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 361 (826)
+|.+....+.........+.++.+|. +++.++.. +..+.+.. .+
T Consensus 221 tg~p~~~~~~~e~~~~~~~~~~~~~~-----~~~~g~~e--------------~~~~~~~~-----------------~s 264 (399)
T KOG0296|consen 221 TGQPLHKITQAEGLELPCISLNLAGS-----TLTKGNSE--------------GVACGVNN-----------------GS 264 (399)
T ss_pred CCceeEEecccccCcCCccccccccc-----eeEeccCC--------------ccEEEEcc-----------------cc
Confidence 99765431111222333445666666 44555322 23333332 22
Q ss_pred CcceecCC---------C---CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeee
Q 003363 362 LPVVNLTE---------S---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (826)
Q Consensus 362 ~~~~~Lt~---------~---~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 429 (826)
|++..... . ...+.+..||.+=...|..+. ...|.+||+.+...+.+-....
T Consensus 265 gKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~v-----------dG~i~iyD~a~~~~R~~c~he~----- 328 (399)
T KOG0296|consen 265 GKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSV-----------DGTIAIYDLAASTLRHICEHED----- 328 (399)
T ss_pred ceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccc-----------cceEEEEecccchhheeccCCC-----
Confidence 22222111 1 122333344443332222222 2568899988866554333222
Q ss_pred eeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC-CCCeeeEEEeecCCEEEEEE
Q 003363 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-ESNFSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~-~~~~~~~~~s~dg~~l~~~~ 506 (826)
++..+.|.+ ..+|+ ++.. +..++.+|..+|+..-.-.+ ...+....++++++.++.++
T Consensus 329 ---------------~V~~l~w~~-t~~l~-t~c~--~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 329 ---------------GVTKLKWLN-TDYLL-TACA--NGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVS 387 (399)
T ss_pred ---------------ceEEEEEcC-cchhe-eecc--CceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEec
Confidence 234566877 44454 4333 34667778889987754333 33344446677776555443
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.9e-05 Score=78.27 Aligned_cols=180 Identities=14% Similarity=0.098 Sum_probs=100.0
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
..|.+|++.+..+..+ -.........+.||||+. |+..+...+. .++.+-.+.+ +.-
T Consensus 209 t~i~lw~lkGq~L~~i--dtnq~~n~~aavSP~GRF----ia~~gFTpDV---------------kVwE~~f~kd--G~f 265 (420)
T KOG2096|consen 209 TKICLWDLKGQLLQSI--DTNQSSNYDAAVSPDGRF----IAVSGFTPDV---------------KVWEPIFTKD--GTF 265 (420)
T ss_pred CcEEEEecCCceeeee--ccccccccceeeCCCCcE----EEEecCCCCc---------------eEEEEEeccC--cch
Confidence 6799999986555555 223345567889999998 8888754443 2222211100 000
Q ss_pred hhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC--CC-CCCcccceeeeeee
Q 003363 353 ELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT--NG-NFSSLEKIVDVIPV 429 (826)
Q Consensus 353 ~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~--~~-~~~~~~~~~~~~~~ 429 (826)
+ +-...-.|..+...+...+||++.++++..|.+. ..+||-.|..= ++ ...+-.+. .++
T Consensus 266 q------ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG---------~wriwdtdVrY~~~qDpk~Lk~g~---~pl 327 (420)
T KOG2096|consen 266 Q------EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG---------KWRIWDTDVRYEAGQDPKILKEGS---APL 327 (420)
T ss_pred h------hhhhhheeccchhheeeeeeCCCcceeEEEecCC---------cEEEeeccceEecCCCchHhhcCC---cch
Confidence 0 1123345666777789999999999999888663 34454443321 11 11111110 000
Q ss_pred eeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC--CCCeeeEEEeecCCEEEEEEe
Q 003363 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA--ESNFSWSLLTLDGDNIIAVSS 507 (826)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~--~~~~~~~~~s~dg~~l~~~~s 507 (826)
+ -. .....++..+|+|+.|.++. ++..++| ...+|+...-... .+.++...|+++|++++.+..
T Consensus 328 --~-----aa---g~~p~RL~lsP~g~~lA~s~--gs~l~~~--~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 328 --H-----AA---GSEPVRLELSPSGDSLAVSF--GSDLKVF--ASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred --h-----hc---CCCceEEEeCCCCcEEEeec--CCceEEE--EcccCccchhHHHhhcCceeeEEecCCCcEEeeecc
Confidence 0 00 01234678899998665432 3444444 4445654433222 235677889999998876654
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.8e-06 Score=85.19 Aligned_cols=203 Identities=14% Similarity=0.120 Sum_probs=138.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEE-ecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEF-HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
..+....||-|...||..+.+ |.-.+|.+..+.-.++.- ..+.++ .+++||.|+..|...+.+.+.+
T Consensus 264 ~aVlci~FSRDsEMlAsGsqD--GkIKvWri~tG~ClRrFdrAHtkGv----------t~l~FSrD~SqiLS~sfD~tvR 331 (508)
T KOG0275|consen 264 DAVLCISFSRDSEMLASGSQD--GKIKVWRIETGQCLRRFDRAHTKGV----------TCLSFSRDNSQILSASFDQTVR 331 (508)
T ss_pred cceEEEeecccHHHhhccCcC--CcEEEEEEecchHHHHhhhhhccCe----------eEEEEccCcchhhcccccceEE
Confidence 358889999999999876543 333344444433333322 123455 7999999999999888776543
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEec-cCCCCCCccceEEEeeCCCCCcc
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l-~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
.- ....++.-+....+.+++....|.+|+...++...+..+.||+..+++...- +..+.+..+..+..-|....
T Consensus 332 iH--GlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe--- 406 (508)
T KOG0275|consen 332 IH--GLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE--- 406 (508)
T ss_pred Ee--ccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc---
Confidence 21 1223444456678899999999999977777777889999999888764332 22344566777777776654
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC---CccccCceecCCCCEEEE
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES---ISSAFFPRFSPDGKFLVF 388 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~---~~~~~~p~~SpDG~~l~f 388 (826)
-..++ ||.+.+|++++ .+..++..+.+ .+.......||.|.+++.
T Consensus 407 -h~iVC--------------Nrsntv~imn~-----------------qGQvVrsfsSGkREgGdFi~~~lSpkGewiYc 454 (508)
T KOG0275|consen 407 -HFIVC--------------NRSNTVYIMNM-----------------QGQVVRSFSSGKREGGDFINAILSPKGEWIYC 454 (508)
T ss_pred -eEEEE--------------cCCCeEEEEec-----------------cceEEeeeccCCccCCceEEEEecCCCcEEEE
Confidence 33333 46668999998 66666666665 234456788999999987
Q ss_pred EeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 389 LSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 389 ~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
+..+ .-||.+...+|+.
T Consensus 455 igED-----------~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 455 IGED-----------GVLYCFSVLSGKL 471 (508)
T ss_pred EccC-----------cEEEEEEeecCce
Confidence 7755 3588888877765
|
|
| >PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.4e-07 Score=89.42 Aligned_cols=168 Identities=19% Similarity=0.186 Sum_probs=81.6
Q ss_pred CCcEEEEEcCCCCCCCCccchH----HHHHHHHCCcEEEEECCCCCC--CCchh---------hh-hcCCCCCCc-----
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSK----SLAFLSSVGYSLLIVNYRGSL--GFGEE---------AL-QSLPGKVGS----- 649 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~----~~~~la~~G~~Vl~~d~rG~~--g~G~~---------~~-~~~~~~~~~----- 649 (826)
+.+-||++||...+ ...|.. ....|.+.++..+.+|-+-.. +.+-. .. ......|..
T Consensus 3 ~k~riLcLHG~~~n--a~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~ 80 (212)
T PF03959_consen 3 RKPRILCLHGYGQN--AEIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDD 80 (212)
T ss_dssp ---EEEEE--TT----HHHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-S
T ss_pred CCceEEEeCCCCcC--HHHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCc
Confidence 45779999996654 334443 333444447888888843211 11100 00 111111211
Q ss_pred chHHHHHHHHHHHHH----cCCCCCCcEEEEEecchHHHHHHHHHhC--------CCceeEEEecCCccchhhhccCCCC
Q 003363 650 QDVNDVLTAIDHVID----MGLANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPLCNLALMVGTTDI 717 (826)
Q Consensus 650 ~~~~D~~~~i~~l~~----~~~~d~~rv~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~~~p~~~~~~~~~~~~~ 717 (826)
....++.++++++.+ ++. -.+|+|+|.||.+|+.++... ...|+.+|+.++.......
T Consensus 81 ~~~~~~~~sl~~l~~~i~~~GP----fdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~------ 150 (212)
T PF03959_consen 81 HEYEGLDESLDYLRDYIEENGP----FDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD------ 150 (212)
T ss_dssp GGG---HHHHHHHHHHHHHH-------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE-------
T ss_pred ccccCHHHHHHHHHHHHHhcCC----eEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh------
Confidence 124455555555544 332 358999999999999887532 2257888888875421100
Q ss_pred CCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEe
Q 003363 718 PDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 797 (826)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 797 (826)
........+|++|+|-++|++|..++.+.++.+++..... .+++..
T Consensus 151 -------------------------------~~~~~~~~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~---~~v~~h 196 (212)
T PF03959_consen 151 -------------------------------YQELYDEPKISIPTLHVIGENDPVVPPERSEALAEMFDPD---ARVIEH 196 (212)
T ss_dssp -------------------------------GTTTT--TT---EEEEEEETT-SSS-HHHHHHHHHHHHHH---EEEEEE
T ss_pred -------------------------------hhhhhccccCCCCeEEEEeCCCCCcchHHHHHHHHhccCC---cEEEEE
Confidence 0000023457899999999999999999999999999874 566666
Q ss_pred CCCCCCCC
Q 003363 798 PNDVHGIE 805 (826)
Q Consensus 798 p~~~H~~~ 805 (826)
+ +||.+.
T Consensus 197 ~-gGH~vP 203 (212)
T PF03959_consen 197 D-GGHHVP 203 (212)
T ss_dssp S-SSSS--
T ss_pred C-CCCcCc
Confidence 5 578764
|
It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A. |
| >COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3e-06 Score=89.73 Aligned_cols=248 Identities=14% Similarity=0.105 Sum_probs=132.3
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhh-----cCCCCCC
Q 003363 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ-----SLPGKVG 648 (826)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~-----~~~~~~~ 648 (826)
..+.+.++.|+..+..++.|.+++.||...... ........++..++.++..+....++.+...+. .......
T Consensus 31 ~~~~~~l~~p~~~~~~~~~p~v~~~h~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 108 (299)
T COG1073 31 IALAAVLHLPPSGNEEKKLPAVVFLHGFGSSKE--QSLGYAVLLAEKGYRVLAGDASLFGESGGDPRGLADSEGYAEDFS 108 (299)
T ss_pred ceeeeEEEecCCCCccccCceEEeccCcccccc--CcchHHHHhhhceeEEeeeccccccccccccccccCccccccccc
Confidence 557788888886544478999999999654432 222266778888999888875111111000000 0000000
Q ss_pred -cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC---ceeEEEecCCccchhhhccC-------CCC
Q 003363 649 -SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLALMVGT-------TDI 717 (826)
Q Consensus 649 -~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~p~~~~~~~~~~-------~~~ 717 (826)
.....+....+..-........++....|.+.|+..+...+...+. ..+.++...+.-........ ...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~g~~~~~~~~~~~~~~~~~~ 188 (299)
T COG1073 109 AAVLLLLSEGVLDKDYRLLGASLGPRILAGLSLGGPSAGALLAWGPTRLDASRIVVWGESLGGALALLLLGANPELAREL 188 (299)
T ss_pred hhheeeeccccccHHHHHHhhhcCcceEEEEEeeccchHHHhhcchhHHHhhcccceeeccCceeeccccccchHHHHhh
Confidence 0000000001111000111223678888888888888777766542 22222221111110000000 000
Q ss_pred CCchhhhhccCcC--CccCCCCCChhhHHHHhhcCcccccCCCC-CcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEE
Q 003363 718 PDWCYVESYGSKG--KDSFTESPSVEDLTRFHSKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 794 (826)
Q Consensus 718 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 794 (826)
.++.......... ........... ...+...++...+.++. +|+|++||..|..||...+..+++..+.. +.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~~--~~~~ 265 (299)
T COG1073 189 IDYLITPGGFAPLPAPEAPLDTLPLR-AVLLLLLDPFDDAEKISPRPVLLVHGERDEVVPLRDAEDLYEAARER--PKKL 265 (299)
T ss_pred hhhhccCCCCCCCCcccccccccccc-hhhhccCcchhhHhhcCCcceEEEecCCCcccchhhhHHHHhhhccC--CceE
Confidence 0000000000000 00000011111 23355666677777777 79999999999999999999999998875 6788
Q ss_pred EEeCCCCCCCCCCCCH--HHHHHHHHHHHHHHcC
Q 003363 795 IVFPNDVHGIERPQSD--FESFLNIGLWFKKYCK 826 (826)
Q Consensus 795 ~~~p~~~H~~~~~~~~--~~~~~~i~~w~~~~l~ 826 (826)
+++++++|........ .+.+..+.+||.+++.
T Consensus 266 ~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~l~ 299 (299)
T COG1073 266 LFVPGGGHIDLYDNPPAVEQALDKLAEFLERHLL 299 (299)
T ss_pred EEecCCccccccCccHHHHHHHHHHHHHHHHhcC
Confidence 8899999987753333 3788999999999874
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.7e-05 Score=73.57 Aligned_cols=201 Identities=15% Similarity=0.208 Sum_probs=117.7
Q ss_pred cccEEEEeCCC-CCeEEEEecCCCCCCeEEEEecCC---ceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecC
Q 003363 154 TGASAVVPSPS-GSKLLVVRNPENESPIQFELWSQS---QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (826)
Q Consensus 154 ~~~~~~~~SPd-G~~la~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~ 229 (826)
..+...+|+|- |..||..... ..+++|..+ ...-.+.+..+.+-.| ..++|||.|+.||..+.+.
T Consensus 15 ~r~W~~awhp~~g~ilAscg~D-----k~vriw~~~~~~s~~ck~vld~~hkrsV------RsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGVILASCGTD-----KAVRIWSTSSGDSWTCKTVLDDGHKRSV------RSVAWSPHGRYLASASFDA 83 (312)
T ss_pred CcEEEEEeccCCceEEEeecCC-----ceEEEEecCCCCcEEEEEeccccchhee------eeeeecCCCcEEEEeeccc
Confidence 35888999998 8766665433 367788332 2222233333433344 8999999999999887654
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCC-CCCccceEEEeeCCCC
Q 003363 230 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEG 308 (826)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~-~~~~~~~~~wSPDg~~ 308 (826)
+ ..+|.-..++.+.+.... .+..+-.++||++|+.
T Consensus 84 t--------------------------------------------~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~ 119 (312)
T KOG0645|consen 84 T--------------------------------------------VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNY 119 (312)
T ss_pred e--------------------------------------------EEEeecCCCceeEEeeeeccccceeEEEEcCCCCE
Confidence 2 233333344433332122 2346778999999998
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc---ceecCCCCccccCceecCCCCE
Q 003363 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESISSAFFPRFSPDGKF 385 (826)
Q Consensus 309 ~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~Lt~~~~~~~~p~~SpDG~~ 385 (826)
|+..+ |+..+|++.++ ++.+ .-.|.++...+-...|.|--..
T Consensus 120 ----LATCS---------------RDKSVWiWe~d----------------eddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 120 ----LATCS---------------RDKSVWIWEID----------------EDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred ----EEEee---------------CCCeEEEEEec----------------CCCcEEEEeeeccccccccEEEEcCCcce
Confidence 88877 44467777763 3333 3467778888899999997665
Q ss_pred EEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC
Q 003363 386 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 465 (826)
Q Consensus 386 l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~ 465 (826)
|+-.+.+ +.|.+|+-..+.. ...+..+.. ....+-...|.++|.+|+ +.+.+
T Consensus 165 L~S~SYD-----------nTIk~~~~~~ddd-------W~c~~tl~g---------~~~TVW~~~F~~~G~rl~-s~sdD 216 (312)
T KOG0645|consen 165 LFSCSYD-----------NTIKVYRDEDDDD-------WECVQTLDG---------HENTVWSLAFDNIGSRLV-SCSDD 216 (312)
T ss_pred eEEeccC-----------CeEEEEeecCCCC-------eeEEEEecC---------ccceEEEEEecCCCceEE-EecCC
Confidence 5544444 3355554321221 111111100 000122457888998774 45667
Q ss_pred CeEEEEE
Q 003363 466 SSQVIIS 472 (826)
Q Consensus 466 ~~~~l~~ 472 (826)
+...||+
T Consensus 217 ~tv~Iw~ 223 (312)
T KOG0645|consen 217 GTVSIWR 223 (312)
T ss_pred cceEeee
Confidence 7888888
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.4e-05 Score=77.15 Aligned_cols=227 Identities=14% Similarity=0.129 Sum_probs=130.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecC-CCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
..+..+.|.-||.+||-.+... ...++.+... +.+.... .+.++.| ..+.|+|-..-+++++.
T Consensus 21 ~~v~Sv~wn~~g~~lasgs~dk--tv~v~n~e~~---r~~~~~~~~gh~~sv------dql~w~~~~~d~~atas----- 84 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGSFDK--TVSVWNLERD---RFRKELVYRGHTDSV------DQLCWDPKHPDLFATAS----- 84 (313)
T ss_pred hcceEEEEcccCceeeecccCC--ceEEEEecch---hhhhhhcccCCCcch------hhheeCCCCCcceEEec-----
Confidence 3478899999999999765532 2233333322 3333322 3444455 78889987666655543
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (826)
+...|.+||+..++.... +.........+|||||++
T Consensus 85 --------------------------------------~dk~ir~wd~r~~k~~~~--i~~~~eni~i~wsp~g~~---- 120 (313)
T KOG1407|consen 85 --------------------------------------GDKTIRIWDIRSGKCTAR--IETKGENINITWSPDGEY---- 120 (313)
T ss_pred --------------------------------------CCceEEEEEeccCcEEEE--eeccCcceEEEEcCCCCE----
Confidence 225788999988887766 444555667899999999
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
+++.. ++..|-.+|. ..-....-.+.........|+-++. +.|+.+-
T Consensus 121 ~~~~~---------------kdD~it~id~-----------------r~~~~~~~~~~~~e~ne~~w~~~nd-~Fflt~G 167 (313)
T KOG1407|consen 121 IAVGN---------------KDDRITFIDA-----------------RTYKIVNEEQFKFEVNEISWNNSND-LFFLTNG 167 (313)
T ss_pred EEEec---------------CcccEEEEEe-----------------cccceeehhcccceeeeeeecCCCC-EEEEecC
Confidence 88876 3336777776 2222222222233456678886655 5566543
Q ss_pred CCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003363 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (826)
.++ +.++.++.=+... .+- . +..+-.-+.|+|+|+++...+. +..+-+
T Consensus 168 --------lG~--v~ILsypsLkpv~---------si~-A---------H~snCicI~f~p~GryfA~GsA---DAlvSL 215 (313)
T KOG1407|consen 168 --------LGC--VEILSYPSLKPVQ---------SIK-A---------HPSNCICIEFDPDGRYFATGSA---DALVSL 215 (313)
T ss_pred --------Cce--EEEEecccccccc---------ccc-c---------CCcceEEEEECCCCceEeeccc---cceeec
Confidence 233 4555555422211 000 0 0011224568999998765432 333444
Q ss_pred EECCCCc-EEEecCCCCCeeeEEEeecCCEEEEE
Q 003363 473 VNVSSGE-LLRITPAESNFSWSLLTLDGDNIIAV 505 (826)
Q Consensus 473 vdl~tg~-~~~lt~~~~~~~~~~~s~dg~~l~~~ 505 (826)
+|++.-- ++.++.-+..+....||-||+.|+-.
T Consensus 216 WD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 216 WDVDELICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred cChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence 4554322 34455556666667788888865543
|
|
| >PRK04940 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.1e-06 Score=77.69 Aligned_cols=119 Identities=10% Similarity=0.116 Sum_probs=74.4
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcC
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKS 750 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 750 (826)
++++|+|.|+|||.|.+++.++. + .+|+++|.+....... ...+.. .. +. .-..+..+.+..
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~-~aVLiNPAv~P~~~L~----------~~ig~~-~~-y~-~~~~~h~~eL~~-- 121 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--I-RQVIFNPNLFPEENME----------GKIDRP-EE-YA-DIATKCVTNFRE-- 121 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--C-CEEEECCCCChHHHHH----------HHhCCC-cc-hh-hhhHHHHHHhhh--
Confidence 46999999999999999999874 3 5667888776422100 001110 00 11 001111222220
Q ss_pred cccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 751 PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 751 p~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
+-.-..+++..+.|+.+++.++.+.+... .+..+.+|++|.|...+ +....|.+|+.
T Consensus 122 ------~~p~r~~vllq~gDEvLDyr~a~~~y~~~------y~~~v~~GGdH~f~~fe---~~l~~I~~F~~ 178 (180)
T PRK04940 122 ------KNRDRCLVILSRNDEVLDSQRTAEELHPY------YEIVWDEEQTHKFKNIS---PHLQRIKAFKT 178 (180)
T ss_pred ------cCcccEEEEEeCCCcccCHHHHHHHhccC------ceEEEECCCCCCCCCHH---HHHHHHHHHHh
Confidence 11134699999999999988887666432 25779999999987443 56778888875
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00015 Score=77.36 Aligned_cols=297 Identities=13% Similarity=0.120 Sum_probs=158.2
Q ss_pred cCCCCcceEE-EEEeechhh-cccceeEEEEEEeecCCCCccceee--cCCcceecccEEEEeCCCCCeEEEEecCCCCC
Q 003363 103 SGNGNGTQAM-FSISQPNLL-ANKRKKFMLSTVISKENENSVTFQW--APFPVEMTGASAVVPSPSGSKLLVVRNPENES 178 (826)
Q Consensus 103 ~~s~dg~~v~-~~~~~~~~~-~~~~~~~l~~~~i~~~~~~~~~lt~--~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~ 178 (826)
..||.-++++ |+..-.... .+.....|.+|+|.++ ...+-+.. .+. .-=....||-|++++|-+..+.
T Consensus 256 dfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG-~lkrsF~~~~~~~----~~WP~frWS~DdKy~Arm~~~s--- 327 (698)
T KOG2314|consen 256 DFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG-LLKRSFPVIKSPY----LKWPIFRWSHDDKYFARMTGNS--- 327 (698)
T ss_pred ecCCccceEEEecCCccccCcccCCCceEEEEEcccc-chhcceeccCCCc----cccceEEeccCCceeEEeccce---
Confidence 4477777664 322111101 1122346777777433 22222211 111 1134578999999998765432
Q ss_pred CeEEEEecCCceeEEEecCC-CccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcc
Q 003363 179 PIQFELWSQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 257 (826)
Q Consensus 179 ~~~~~i~~~~~~~~~~~~~~-~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (826)
+.|..... -.+.+... .+. .+.+++|||-+..|||-......
T Consensus 328 ---isIyEtps-f~lld~Kslki~-------gIr~FswsP~~~llAYwtpe~~~-------------------------- 370 (698)
T KOG2314|consen 328 ---ISIYETPS-FMLLDKKSLKIS-------GIRDFSWSPTSNLLAYWTPETNN-------------------------- 370 (698)
T ss_pred ---EEEEecCc-eeeecccccCCc-------cccCcccCCCcceEEEEcccccC--------------------------
Confidence 23332111 11222111 111 12689999999999998654421
Q ss_pred eeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCccee-eeeeeeccCCCc
Q 003363 258 DWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK-LGIKYCYNRPCA 336 (826)
Q Consensus 258 ~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~-~g~~~~~~~~~~ 336 (826)
....+-++.+-++...+.. --.++....+.|--+|++ |.|-..+..-.+ .|..+ +-.
T Consensus 371 -------------~parvtL~evPs~~~iRt~-nlfnVsDckLhWQk~gdy----LcvkvdR~tK~~~~g~f~----n~e 428 (698)
T KOG2314|consen 371 -------------IPARVTLMEVPSKREIRTK-NLFNVSDCKLHWQKSGDY----LCVKVDRHTKSKVKGQFS----NLE 428 (698)
T ss_pred -------------CcceEEEEecCccceeeec-cceeeeccEEEeccCCcE----EEEEEEeeccccccceEe----eEE
Confidence 1123444555555433321 111234456789999999 988765543322 22222 236
Q ss_pred eEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 337 LYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 337 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
|++++= ..-.+..+ +-...+...+|-|.|.+++.++.... ..+-+.|-+.......
T Consensus 429 Ifrire-----------------KdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~------k~tvsfY~~e~~~~~~ 484 (698)
T KOG2314|consen 429 IFRIRE-----------------KDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTV------KNTVSFYAVETNIKKP 484 (698)
T ss_pred EEEeec-----------------cCCCceee-ecchheeeeeeccCCCeEEEEEcccc------ccceeEEEeecCCCch
Confidence 777762 11122222 12234677899999999999987753 1223444443222111
Q ss_pred CCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC-CeeeEEE
Q 003363 417 FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLL 495 (826)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~-~~~~~~~ 495 (826)
.+....+. .....+.|||.|+.+++.+-.+....|.-+|.+-...+.+..... ..+...|
T Consensus 485 -~lVk~~dk------------------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veW 545 (698)
T KOG2314|consen 485 -SLVKELDK------------------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEW 545 (698)
T ss_pred -hhhhhhcc------------------cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceE
Confidence 11111110 022467899999988888776667788888876445544433222 3455678
Q ss_pred eecCCEEEEEEeCC
Q 003363 496 TLDGDNIIAVSSSP 509 (826)
Q Consensus 496 s~dg~~l~~~~s~~ 509 (826)
+|.|++++...+..
T Consensus 546 DPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 546 DPTGRYVVTSSSSW 559 (698)
T ss_pred CCCCCEEEEeeehh
Confidence 99999888777654
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.3e-05 Score=73.08 Aligned_cols=234 Identities=12% Similarity=0.091 Sum_probs=142.9
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
.....+.-+|..|...+... ...+| ..|+ ++-.. .+..|.| .++..+-|.++++..+
T Consensus 13 lTqiKyN~eGDLlFscaKD~-----~~~vw~s~nGe--rlGty-~GHtGav------W~~Did~~s~~liTGS------- 71 (327)
T KOG0643|consen 13 LTQIKYNREGDLLFSCAKDS-----TPTVWYSLNGE--RLGTY-DGHTGAV------WCCDIDWDSKHLITGS------- 71 (327)
T ss_pred cceEEecCCCcEEEEecCCC-----CceEEEecCCc--eeeee-cCCCceE------EEEEecCCcceeeecc-------
Confidence 55678888998776554432 44566 2332 33222 3555555 4555555666665533
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (826)
.+..+.+||+++|+.... ......+..+.|+++|.. +
T Consensus 72 -------------------------------------AD~t~kLWDv~tGk~la~--~k~~~~Vk~~~F~~~gn~----~ 108 (327)
T KOG0643|consen 72 -------------------------------------ADQTAKLWDVETGKQLAT--WKTNSPVKRVDFSFGGNL----I 108 (327)
T ss_pred -------------------------------------ccceeEEEEcCCCcEEEE--eecCCeeEEEeeccCCcE----E
Confidence 446789999999998776 566667889999999998 8
Q ss_pred EEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEecc
Q 003363 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 314 vf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
++.....- ...+.|..+|+...+.. ..+.+ ..++......+....|+|-|+.|+....+
T Consensus 109 l~~tD~~m----------g~~~~v~~fdi~~~~~~----------~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~ 168 (327)
T KOG0643|consen 109 LASTDKQM----------GYTCFVSVFDIRDDSSD----------IDSEEPYLKIPTPDSKITSALWGPLGETIIAGHED 168 (327)
T ss_pred EEEehhhc----------CcceEEEEEEccCChhh----------hcccCceEEecCCccceeeeeecccCCEEEEecCC
Confidence 88763221 13456777777432110 12333 45666566678889999999999866544
Q ss_pred CCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003363 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (826)
..|-.||+.+|....-+... +...+..+.+++|.. .+++++.+....|+
T Consensus 169 -----------G~is~~da~~g~~~v~s~~~------------------h~~~Ind~q~s~d~T-~FiT~s~Dttakl~- 217 (327)
T KOG0643|consen 169 -----------GSISIYDARTGKELVDSDEE------------------HSSKINDLQFSRDRT-YFITGSKDTTAKLV- 217 (327)
T ss_pred -----------CcEEEEEcccCceeeechhh------------------hccccccccccCCcc-eEEecccCccceee-
Confidence 45888998886542211111 223567889999986 55666666666655
Q ss_pred EECCCCcEEEecCCCCCeeeEEEeecCCEEEEE
Q 003363 473 VNVSSGELLRITPAESNFSWSLLTLDGDNIIAV 505 (826)
Q Consensus 473 vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~ 505 (826)
|..+-++.+--.....+...+++|--+.++..
T Consensus 218 -D~~tl~v~Kty~te~PvN~aaisP~~d~Vilg 249 (327)
T KOG0643|consen 218 -DVRTLEVLKTYTTERPVNTAAISPLLDHVILG 249 (327)
T ss_pred -eccceeeEEEeeecccccceecccccceEEec
Confidence 55455544432222334445677765555544
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-05 Score=82.50 Aligned_cols=164 Identities=18% Similarity=0.212 Sum_probs=94.8
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCce------e--------EEEe-cCCCccccccCCCcccceeecCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL------E--------KEFH-VPQTVHGSVYADGWFEGISWNSD 218 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~------~--------~~~~-~~~~~~g~v~~~~~~~~~~wSPD 218 (826)
..+....|||+|..||...+.+ ...+|..+.. + .++. .-.+. .+....+.|+||
T Consensus 66 ~aVN~vRf~p~gelLASg~D~g-----~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h------~~diydL~Ws~d 134 (434)
T KOG1009|consen 66 RAVNVVRFSPDGELLASGGDGG-----EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGH------RDDIYDLAWSPD 134 (434)
T ss_pred ceeEEEEEcCCcCeeeecCCCc-----eEEEEEecCcCCccccchhhhCccceEEEEEeccc------ccchhhhhccCC
Confidence 4588999999999999754432 4566732210 0 0000 00111 123368899999
Q ss_pred CCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccc
Q 003363 219 ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVG 298 (826)
Q Consensus 219 g~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~ 298 (826)
+..+++.+- .+.+++||+..|.+.... -.....+.
T Consensus 135 ~~~l~s~s~--------------------------------------------dns~~l~Dv~~G~l~~~~-~dh~~yvq 169 (434)
T KOG1009|consen 135 SNFLVSGSV--------------------------------------------DNSVRLWDVHAGQLLAIL-DDHEHYVQ 169 (434)
T ss_pred Cceeeeeec--------------------------------------------cceEEEEEeccceeEeec-cccccccc
Confidence 999988643 367899999999887763 34455788
Q ss_pred eEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCC---cccc
Q 003363 299 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI---SSAF 375 (826)
Q Consensus 299 ~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~---~~~~ 375 (826)
.++|.|-++. |+-.+....++..+.. -...++.+... ++..+......+...+|.... ...+
T Consensus 170 gvawDpl~qy----v~s~s~dr~~~~~~~~----~~~~~~~~~~~-------~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 170 GVAWDPLNQY----VASKSSDRHPEGFSAK----LKQVIKRHGLD-------IMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred eeecchhhhh----hhhhccCcccceeeee----eeeeeeeeeee-------EeeecccCCCCcceeeeeecCchhhhhh
Confidence 8999999888 7766543322222221 11123333211 011111111334455565442 2357
Q ss_pred CceecCCCCEEEE
Q 003363 376 FPRFSPDGKFLVF 388 (826)
Q Consensus 376 ~p~~SpDG~~l~f 388 (826)
.++|+|||..|+-
T Consensus 235 RlsfTPdG~llvt 247 (434)
T KOG1009|consen 235 RLSFTPDGSLLVT 247 (434)
T ss_pred hcccCCCCcEEEc
Confidence 7899999987653
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.1e-06 Score=85.60 Aligned_cols=241 Identities=11% Similarity=0.049 Sum_probs=151.5
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
.++...||+||.+++..... ..+.+|. ..+..+.++. .| ++.+.+++|||...+.+..+++.+.+.
T Consensus 140 ~Vr~m~ws~~g~wmiSgD~g-----G~iKyWqpnmnnVk~~~a---hh-----~eaIRdlafSpnDskF~t~SdDg~iki 206 (464)
T KOG0284|consen 140 PVRTMKWSHNGTWMISGDKG-----GMIKYWQPNMNNVKIIQA---HH-----AEAIRDLAFSPNDSKFLTCSDDGTIKI 206 (464)
T ss_pred cceeEEEccCCCEEEEcCCC-----ceEEecccchhhhHHhhH---hh-----hhhhheeccCCCCceeEEecCCCeEEE
Confidence 48999999999999764332 3777883 2233333322 11 123389999999888888888887654
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (826)
+.+. ..++......+.--+...+|.|.-|...++.+.+-+-+||..+|....-. ......+-.+.|+|+|.+ |
T Consensus 207 Wdf~--~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tl-h~HKntVl~~~f~~n~N~----L 279 (464)
T KOG0284|consen 207 WDFR--MPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL-HGHKNTVLAVKFNPNGNW----L 279 (464)
T ss_pred Eecc--CCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhh-hhccceEEEEEEcCCCCe----e
Confidence 4333 22333333334333446678888788888888889999999988654321 333457889999999987 8
Q ss_pred EEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccC
Q 003363 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (826)
Q Consensus 314 vf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~ 393 (826)
+-.+ +++.+..+|+. .-.+......+...+....|+|=-.-|+....-
T Consensus 280 lt~s---------------kD~~~kv~DiR----------------~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~- 327 (464)
T KOG0284|consen 280 LTGS---------------KDQSCKVFDIR----------------TMKELFTYRGHKKDVTSLTWHPLNESLFTSGGS- 327 (464)
T ss_pred EEcc---------------CCceEEEEehh----------------HhHHHHHhhcchhhheeeccccccccceeeccC-
Confidence 7766 45567778872 123455555666678889999977766433322
Q ss_pred CCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003363 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (826)
Q Consensus 394 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~v 473 (826)
..+|..+.+...+....... .++..+-++.|.|=|. |+.+.+.+.....|.-
T Consensus 328 ---------Dgsvvh~~v~~~~p~~~i~~------------------AHd~~iwsl~~hPlGh-il~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 328 ---------DGSVVHWVVGLEEPLGEIPP------------------AHDGEIWSLAYHPLGH-ILATGSNDRTVRFWTR 379 (464)
T ss_pred ---------CCceEEEeccccccccCCCc------------------ccccceeeeeccccce-eEeecCCCcceeeecc
Confidence 24566666653332211110 0222344778999885 7677666666666654
Q ss_pred EC
Q 003363 474 NV 475 (826)
Q Consensus 474 dl 475 (826)
+.
T Consensus 380 ~r 381 (464)
T KOG0284|consen 380 NR 381 (464)
T ss_pred CC
Confidence 43
|
|
| >PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.8e-05 Score=81.04 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=89.5
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCC--CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh-hccCCCC--CCch
Q 003363 647 VGSQDVNDVLTAIDHVIDMGLANP--SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-MVGTTDI--PDWC 721 (826)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~--~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~-~~~~~~~--~~~~ 721 (826)
+|-..+.|++.|+.++.++..-.. -++.++|+|+||+++...+.-.|-.+.+++-.++.+.... +.-..++ ..+.
T Consensus 158 ~GIMqAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y~ 237 (403)
T PF11144_consen 158 FGIMQAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKYI 237 (403)
T ss_pred hHHHHHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCccccc
Confidence 344456788888888888633222 4899999999999999999888999999887776543211 1100000 0000
Q ss_pred hhhhc---cCcC----CccCCC----CCChhhHHHHhhcCcc--cc---cCCC--CCcEEEEEeCCCCCCCcHHHHHHHH
Q 003363 722 YVESY---GSKG----KDSFTE----SPSVEDLTRFHSKSPI--SH---ISKV--KTPTIFLLGAQDLRVPVSNGLQYAR 783 (826)
Q Consensus 722 ~~~~~---~~~~----~~~~~~----~~~~~~~~~~~~~sp~--~~---~~~i--~~PvLii~G~~D~~vp~~~~~~~~~ 783 (826)
..... .... .+.++. .|..-..+.+.-++.+ .+ ..+. ++-.+..|+..|+.+|.++-.++++
T Consensus 238 ~~~~~~~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p~~~K~~l~~ 317 (403)
T PF11144_consen 238 CSGEFFNFKNIRIYCFDKTFWTRNKNSPYYFSKARYIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAPAEDKEELYE 317 (403)
T ss_pred ccccccccCCEEEEEEeccccccCCCCccccChHHHHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCCHHHHHHHHH
Confidence 00000 0000 000100 0110011111111111 11 1122 3456778999999999999999999
Q ss_pred HHHhCCCCEEEEEeCC
Q 003363 784 ALREKGVETKVIVFPN 799 (826)
Q Consensus 784 ~l~~~g~~~~~~~~p~ 799 (826)
.+++.|.+++++.+.+
T Consensus 318 ~l~~lgfda~l~lIkd 333 (403)
T PF11144_consen 318 ILKNLGFDATLHLIKD 333 (403)
T ss_pred HHHHcCCCeEEEEecC
Confidence 9999999999999843
|
|
| >PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.3e-05 Score=82.82 Aligned_cols=111 Identities=18% Similarity=0.251 Sum_probs=73.6
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHH---CCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHH----HHHHHHHH
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSS---VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL----TAIDHVID 664 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~---~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~----~~i~~l~~ 664 (826)
.++|+++.|.|+. ...|...+..|.+ ..|.|+++.+.|......... ...+.....++|.+ +.++.++.
T Consensus 2 ~~li~~IPGNPGl--v~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~--~~~~~~~~sL~~QI~hk~~~i~~~~~ 77 (266)
T PF10230_consen 2 RPLIVFIPGNPGL--VEFYEEFLSALYEKLNPQFEILGISHAGHSTSPSNSK--FSPNGRLFSLQDQIEHKIDFIKELIP 77 (266)
T ss_pred cEEEEEECCCCCh--HHHHHHHHHHHHHhCCCCCeeEEecCCCCcCCccccc--ccCCCCccCHHHHHHHHHHHHHHHhh
Confidence 5789999999876 4466666666653 479999999999543222100 00112222344433 33444443
Q ss_pred cCCCCCCcEEEEEecchHHHHHHHHHhCC---CceeEEEecCCcc
Q 003363 665 MGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLC 706 (826)
Q Consensus 665 ~~~~d~~rv~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~p~~ 706 (826)
.......++.|+|||.|+|+++.++.+.+ ..++.+++..|..
T Consensus 78 ~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 78 QKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTI 122 (266)
T ss_pred hhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcc
Confidence 32114578999999999999999999988 6788888888854
|
|
| >KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.8e-06 Score=86.56 Aligned_cols=130 Identities=16% Similarity=0.206 Sum_probs=90.3
Q ss_pred ccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
...||.++...++.-.....+...-+||+.-|..+--.. ..+..-++.||.|+..|.+|-.| +-. ..+.
T Consensus 220 ks~dgneiDtmF~d~r~n~~~ngq~LvIC~EGNAGFYEv----G~m~tP~~lgYsvLGwNhPGFag---STG----~P~p 288 (517)
T KOG1553|consen 220 KSSDGNEIDTMFLDGRPNQSGNGQDLVICFEGNAGFYEV----GVMNTPAQLGYSVLGWNHPGFAG---STG----LPYP 288 (517)
T ss_pred eecCCcchhheeecCCCCCCCCCceEEEEecCCccceEe----eeecChHHhCceeeccCCCCccc---cCC----CCCc
Confidence 344666787777754422344456678888874322101 12223357899999999998443 321 1233
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh
Q 003363 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710 (826)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~ 710 (826)
.++...+.+++++.++.-....+.|.|+|+|.||+-++++|..+|| ++++|+-+.+-|+..
T Consensus 289 ~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDllp 349 (517)
T KOG1553|consen 289 VNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLLP 349 (517)
T ss_pred ccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhhh
Confidence 4567777888999999766778899999999999999999999997 799998887766543
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.6e-05 Score=84.15 Aligned_cols=174 Identities=16% Similarity=0.139 Sum_probs=111.2
Q ss_pred cCceEEEEEccCCceE-eccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchh
Q 003363 271 RQPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 349 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~-~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 349 (826)
.+..+.++....++.. .| ..-.+....++++-+|+. +++.+. +..|-+++..
T Consensus 74 ~~~tv~~y~fps~~~~~iL--~Rftlp~r~~~v~g~g~~----iaagsd---------------D~~vK~~~~~------ 126 (933)
T KOG1274|consen 74 EQNTVLRYKFPSGEEDTIL--ARFTLPIRDLAVSGSGKM----IAAGSD---------------DTAVKLLNLD------ 126 (933)
T ss_pred ccceEEEeeCCCCCcccee--eeeeccceEEEEecCCcE----EEeecC---------------ceeEEEEecc------
Confidence 4567777777777665 33 334567788999999999 999882 2367777763
Q ss_pred hhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeee
Q 003363 350 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (826)
Q Consensus 350 ~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 429 (826)
+.+..+.+..+.+.+....|+|.|+.||..+-+ ..|++||++.+.......+ +.+
T Consensus 127 ----------D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~d-----------G~v~iw~~~~~~~~~tl~~---v~k- 181 (933)
T KOG1274|consen 127 ----------DSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCD-----------GKVQIWDLQDGILSKTLTG---VDK- 181 (933)
T ss_pred ----------ccchheeecccCCceeeeeEcCCCCEEEEEecC-----------ceEEEEEcccchhhhhccc---CCc-
Confidence 556677788888899999999999999877755 4589999887654321111 111
Q ss_pred eeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe-cCCC--CCeeeEEEeecCCEEEEEE
Q 003363 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI-TPAE--SNFSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~l-t~~~--~~~~~~~~s~dg~~l~~~~ 506 (826)
+..|. -......++|+|+|.++++... ++...+| +.++.+..-- .... ..+....|+|.|.+|++..
T Consensus 182 -----~n~~~--~s~i~~~~aW~Pk~g~la~~~~-d~~Vkvy--~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~ 251 (933)
T KOG1274|consen 182 -----DNEFI--LSRICTRLAWHPKGGTLAVPPV-DNTVKVY--SRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAST 251 (933)
T ss_pred -----ccccc--ccceeeeeeecCCCCeEEeecc-CCeEEEE--ccCCceeheeecccccccceEEEEEcCCCcEEeeec
Confidence 11110 0112357899999877776643 3333444 4445544322 2211 1366778899888776553
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.4e-05 Score=89.64 Aligned_cols=209 Identities=13% Similarity=0.130 Sum_probs=114.9
Q ss_pred cccEEEEeCC-CCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceee-cCCCCeEEEEeecC
Q 003363 154 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISW-NSDETLIAYVAEEP 229 (826)
Q Consensus 154 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~w-SPDg~~ia~~~~~~ 229 (826)
..+...+|+| ||..|+..+..+ .+.+|+ .+......... ..+ ..+.| +++|+.|+..+.+
T Consensus 576 ~~V~~l~~~p~~~~~L~Sgs~Dg-----~v~iWd~~~~~~~~~~~~~----~~v------~~v~~~~~~g~~latgs~d- 639 (793)
T PLN00181 576 KRVWSIDYSSADPTLLASGSDDG-----SVKLWSINQGVSIGTIKTK----ANI------CCVQFPSESGRSLAFGSAD- 639 (793)
T ss_pred CCEEEEEEcCCCCCEEEEEcCCC-----EEEEEECCCCcEEEEEecC----CCe------EEEEEeCCCCCEEEEEeCC-
Confidence 4588899997 788887765432 567773 23322222211 122 57788 4678888876432
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCce--EeccCCCCCCccceEEEeeCCC
Q 003363 230 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNE 307 (826)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~--~~l~~~~~~~~~~~~~wSPDg~ 307 (826)
..|++||+.+++. ..+ ......+..+.|+ |+.
T Consensus 640 -------------------------------------------g~I~iwD~~~~~~~~~~~--~~h~~~V~~v~f~-~~~ 673 (793)
T PLN00181 640 -------------------------------------------HKVYYYDLRNPKLPLCTM--IGHSKTVSYVRFV-DSS 673 (793)
T ss_pred -------------------------------------------CeEEEEECCCCCccceEe--cCCCCCEEEEEEe-CCC
Confidence 5799999876542 233 2333456788897 677
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEE
Q 003363 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 387 (826)
Q Consensus 308 ~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~ 387 (826)
. |+..+ .+..|.++|+.... ..........+..+........|+|+|++|+
T Consensus 674 ~----lvs~s---------------~D~~ikiWd~~~~~----------~~~~~~~l~~~~gh~~~i~~v~~s~~~~~la 724 (793)
T PLN00181 674 T----LVSSS---------------TDNTLKLWDLSMSI----------SGINETPLHSFMGHTNVKNFVGLSVSDGYIA 724 (793)
T ss_pred E----EEEEE---------------CCCEEEEEeCCCCc----------cccCCcceEEEcCCCCCeeEEEEcCCCCEEE
Confidence 6 76655 22357777763100 0001223455666655566788999999888
Q ss_pred EEeccCCCCCCCCcccceEEEEeCCCCCCCC-cccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCC
Q 003363 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 466 (826)
Q Consensus 388 f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~ 466 (826)
..+.+ ..+++|+........ ......+...-..... ....+..++|++||..|+ ++...+
T Consensus 725 sgs~D-----------~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~-------~~~~V~~v~ws~~~~~lv-a~~~dG 785 (793)
T PLN00181 725 TGSET-----------NEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDD-------ASQFISSVCWRGQSSTLV-AANSTG 785 (793)
T ss_pred EEeCC-----------CEEEEEECCCCCceEEEecccCCcccccccCC-------CCcEEEEEEEcCCCCeEE-EecCCC
Confidence 77654 357888765432110 0000000000000000 011245788999998654 444556
Q ss_pred eEEEEE
Q 003363 467 SQVIIS 472 (826)
Q Consensus 467 ~~~l~~ 472 (826)
...+|.
T Consensus 786 ~I~i~~ 791 (793)
T PLN00181 786 NIKILE 791 (793)
T ss_pred cEEEEe
Confidence 555553
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00012 Score=72.91 Aligned_cols=101 Identities=16% Similarity=0.219 Sum_probs=61.1
Q ss_pred CCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeC-
Q 003363 333 RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW- 411 (826)
Q Consensus 333 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~- 411 (826)
..+.|.++++ .+.....+..........+.||||++|+...-. .++.+|..
T Consensus 207 ~dt~i~lw~l-----------------kGq~L~~idtnq~~n~~aavSP~GRFia~~gFT-----------pDVkVwE~~ 258 (420)
T KOG2096|consen 207 LDTKICLWDL-----------------KGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFT-----------PDVKVWEPI 258 (420)
T ss_pred CCCcEEEEec-----------------CCceeeeeccccccccceeeCCCCcEEEEecCC-----------CCceEEEEE
Confidence 3447889998 544445555555567788999999988754432 23444442
Q ss_pred -CCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003363 412 -PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (826)
Q Consensus 412 -~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl 475 (826)
..++.. .++..++.. .| +...+..++||+|++++ ++.+.+|..+||-.|+
T Consensus 259 f~kdG~f------qev~rvf~L------kG-H~saV~~~aFsn~S~r~-vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 259 FTKDGTF------QEVKRVFSL------KG-HQSAVLAAAFSNSSTRA-VTVSKDGKWRIWDTDV 309 (420)
T ss_pred eccCcch------hhhhhhhee------cc-chhheeeeeeCCCccee-EEEecCCcEEEeeccc
Confidence 222221 112222211 11 33356678999999877 5667788888988775
|
|
| >COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.5e-05 Score=83.45 Aligned_cols=214 Identities=17% Similarity=0.203 Sum_probs=122.3
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCC---CccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchH
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS---LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~---~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~ 652 (826)
+..+.|.|.. ....++|+ +.+|-.-...+ ...-.....+|.++|..|++++.++-. .+.. ..++..+..
T Consensus 93 ~~liqy~p~~-e~v~~~Pl-LiVpP~iNk~yi~Dl~~~~s~V~~l~~~g~~vfvIsw~nPd-~~~~-----~~~~edYi~ 164 (445)
T COG3243 93 LELIQYKPLT-EKVLKRPL-LIVPPWINKFYILDLSPEKSLVRWLLEQGLDVFVISWRNPD-ASLA-----AKNLEDYIL 164 (445)
T ss_pred hhhhccCCCC-CccCCCce-EeeccccCceeEEeCCCCccHHHHHHHcCCceEEEeccCch-Hhhh-----hccHHHHHH
Confidence 3445565652 12245564 44554222211 112234788999999999999988622 1111 122333334
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCc-eeEEEecCCccchhhhc-------------------
Q 003363 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK-FVAAAARNPLCNLALMV------------------- 712 (826)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~-~~a~v~~~p~~~~~~~~------------------- 712 (826)
+++..+++.+++.. ..++|-++|+|.||.++..+++.++.+ ++.++......|+....
T Consensus 165 e~l~~aid~v~~it--g~~~InliGyCvGGtl~~~ala~~~~k~I~S~T~lts~~DF~~~g~l~if~n~~~~~~~~~~i~ 242 (445)
T COG3243 165 EGLSEAIDTVKDIT--GQKDINLIGYCVGGTLLAAALALMAAKRIKSLTLLTSPVDFSHAGDLGIFANEATIEALDADIV 242 (445)
T ss_pred HHHHHHHHHHHHHh--CccccceeeEecchHHHHHHHHhhhhcccccceeeecchhhccccccccccCHHHHHHHHhhhh
Confidence 67778888888763 347899999999999999998888876 88777665555442110
Q ss_pred cCCCCCCchhhhhccCc---------CCccCC--CCCC-------------------hhhHHHHhhcCcc----------
Q 003363 713 GTTDIPDWCYVESYGSK---------GKDSFT--ESPS-------------------VEDLTRFHSKSPI---------- 752 (826)
Q Consensus 713 ~~~~~~~~~~~~~~~~~---------~~~~~~--~~~~-------------------~~~~~~~~~~sp~---------- 752 (826)
....++.|.....+... ....+. ..|. .+....++..+++
T Consensus 243 ~~g~lpg~~ma~~F~mLrpndliw~~fV~nyl~ge~pl~fdllyWn~dst~~~~~~~~~~Lrn~y~~N~l~~g~~~v~G~ 322 (445)
T COG3243 243 QKGILPGWYMAIVFFLLRPNDLIWNYFVNNYLDGEQPLPFDLLYWNADSTRLPGAAHSEYLRNFYLENRLIRGGLEVSGT 322 (445)
T ss_pred hccCCChHHHHHHHHhcCccccchHHHHHHhcCCCCCCchhHHHhhCCCccCchHHHHHHHHHHHHhChhhccceEECCE
Confidence 11122222211110000 000000 0000 1112222222222
Q ss_pred -cccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCC
Q 003363 753 -SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803 (826)
Q Consensus 753 -~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~ 803 (826)
-.+.+|+||++++.|+.|.++|........+.+.. +++++.. +.||-
T Consensus 323 ~VdL~~It~pvy~~a~~~DhI~P~~Sv~~g~~l~~g---~~~f~l~-~sGHI 370 (445)
T COG3243 323 MVDLGDITCPVYNLAAEEDHIAPWSSVYLGARLLGG---EVTFVLS-RSGHI 370 (445)
T ss_pred EechhhcccceEEEeecccccCCHHHHHHHHHhcCC---ceEEEEe-cCceE
Confidence 24678999999999999999999888777766654 5777776 56884
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00095 Score=68.32 Aligned_cols=185 Identities=15% Similarity=0.109 Sum_probs=111.2
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCC---CccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQ---TVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~---~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
....+|||||++|+...+.-+....++-+|+ ....+++-+.+. +. ..+.|.|||+.|+.. +....
T Consensus 53 yGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGP----------Hel~l~pDG~tLvVA-NGGI~ 121 (305)
T PF07433_consen 53 YGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGP----------HELLLMPDGETLVVA-NGGIE 121 (305)
T ss_pred ecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcCh----------hhEEEcCCCCEEEEE-cCCCc
Confidence 4468999999998766555445667888884 335555554432 33 378899999888764 32211
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceE-ecc--CCCCCCccceEEEeeCCCC
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVK--GIPKSLSVGQVVWAPLNEG 308 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~-~l~--~~~~~~~~~~~~wSPDg~~ 308 (826)
..|... . .+......+++|..+|..+|++. +.. ......++.++++.+||.
T Consensus 122 Thpd~G-------R------------------~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~- 175 (305)
T PF07433_consen 122 THPDSG-------R------------------AKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT- 175 (305)
T ss_pred cCcccC-------c------------------eecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc-
Confidence 111000 0 01222335689999999999854 321 112345889999999998
Q ss_pred CccEEEEEe-ecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceec-------CCCCccccCceec
Q 003363 309 LHQYLVFVG-WSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-------TESISSAFFPRFS 380 (826)
Q Consensus 309 ~~~~lvf~~-~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-------t~~~~~~~~p~~S 380 (826)
++|.. ++.++. ....-|...+. ++..+.+ ..-.+++.+++++
T Consensus 176 ----V~~a~Q~qg~~~--------~~~PLva~~~~------------------g~~~~~~~~p~~~~~~l~~Y~gSIa~~ 225 (305)
T PF07433_consen 176 ----VAFAMQYQGDPG--------DAPPLVALHRR------------------GGALRLLPAPEEQWRRLNGYIGSIAAD 225 (305)
T ss_pred ----EEEEEecCCCCC--------ccCCeEEEEcC------------------CCcceeccCChHHHHhhCCceEEEEEe
Confidence 66654 333221 11122334432 1212222 1224678899999
Q ss_pred CCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCC
Q 003363 381 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (826)
Q Consensus 381 pDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~ 417 (826)
+||..++..+.+. +.+.+||..++...
T Consensus 226 ~~g~~ia~tsPrG----------g~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 226 RDGRLIAVTSPRG----------GRVAVWDAATGRLL 252 (305)
T ss_pred CCCCEEEEECCCC----------CEEEEEECCCCCEe
Confidence 9999998888764 45778888887653
|
|
| >KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.6e-05 Score=72.30 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=85.8
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhC--C------CceeEEEecCCccchhhhccCCCCCCchhhhhc
Q 003363 655 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--P------DKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 726 (826)
Q Consensus 655 ~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~--p------~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 726 (826)
+....+++.+++..| +|+|+|.|+.++..+++.. . -.|+-+|+.+|..-...
T Consensus 92 l~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~~---------------- 151 (230)
T KOG2551|consen 92 LEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPSK---------------- 151 (230)
T ss_pred HHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCcc----------------
Confidence 455566777787776 8999999999999998721 1 13677787777542100
Q ss_pred cCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCC
Q 003363 727 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 806 (826)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~ 806 (826)
+. . -..+...+++|.|-+.|+.|.++|...+..+++...+. .++.-.+||.+..
T Consensus 152 -----------~~----~------~~~~~~~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a-----~vl~HpggH~VP~ 205 (230)
T KOG2551|consen 152 -----------KL----D------ESAYKRPLSTPSLHIFGETDTIVPSERSEQLAESFKDA-----TVLEHPGGHIVPN 205 (230)
T ss_pred -----------hh----h------hhhhccCCCCCeeEEecccceeecchHHHHHHHhcCCC-----eEEecCCCccCCC
Confidence 00 0 01234568899999999999999999999999999874 4444456897754
Q ss_pred CCCHHHHHHHHHHHHHHHc
Q 003363 807 PQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 807 ~~~~~~~~~~i~~w~~~~l 825 (826)
.. ...+.|.+||...+
T Consensus 206 ~~---~~~~~i~~fi~~~~ 221 (230)
T KOG2551|consen 206 KA---KYKEKIADFIQSFL 221 (230)
T ss_pred ch---HHHHHHHHHHHHHH
Confidence 33 56778888887653
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=9.2e-05 Score=83.53 Aligned_cols=154 Identities=15% Similarity=0.190 Sum_probs=100.1
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
....+++-||+++|+.++.. .+-++. .+...++.+. +..+.| ..+.++|.|+.||.++-+
T Consensus 99 ~r~~~v~g~g~~iaagsdD~----~vK~~~~~D~s~~~~lr---gh~apV------l~l~~~p~~~fLAvss~d------ 159 (933)
T KOG1274|consen 99 IRDLAVSGSGKMIAAGSDDT----AVKLLNLDDSSQEKVLR---GHDAPV------LQLSYDPKGNFLAVSSCD------ 159 (933)
T ss_pred ceEEEEecCCcEEEeecCce----eEEEEeccccchheeec---ccCCce------eeeeEcCCCCEEEEEecC------
Confidence 67789999999999976543 344444 3333333332 333333 899999999999987543
Q ss_pred CccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEe-ccCCCCC------CccceEEEeeCCC
Q 003363 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA-VKGIPKS------LSVGQVVWAPLNE 307 (826)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~-l~~~~~~------~~~~~~~wSPDg~ 307 (826)
+.+++||++++.+.. ++++... -.+..++|+|+|.
T Consensus 160 --------------------------------------G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g 201 (933)
T KOG1274|consen 160 --------------------------------------GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG 201 (933)
T ss_pred --------------------------------------ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC
Confidence 578999998886543 2223322 2456899999988
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc-eecCCC-Cc-cccCceecCCCC
Q 003363 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTES-IS-SAFFPRFSPDGK 384 (826)
Q Consensus 308 ~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~-~~-~~~~p~~SpDG~ 384 (826)
. +++..-+ ..+..++. .+.+. ..|... .. ......|||.|+
T Consensus 202 ~----la~~~~d---------------~~Vkvy~r-----------------~~we~~f~Lr~~~~ss~~~~~~wsPnG~ 245 (933)
T KOG1274|consen 202 T----LAVPPVD---------------NTVKVYSR-----------------KGWELQFKLRDKLSSSKFSDLQWSPNGK 245 (933)
T ss_pred e----EEeeccC---------------CeEEEEcc-----------------CCceeheeecccccccceEEEEEcCCCc
Confidence 8 8887632 24555554 33332 223222 11 256789999999
Q ss_pred EEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 385 FLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 385 ~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
|||-...+ ++|.+||+++
T Consensus 246 YiAAs~~~-----------g~I~vWnv~t 263 (933)
T KOG1274|consen 246 YIAASTLD-----------GQILVWNVDT 263 (933)
T ss_pred EEeeeccC-----------CcEEEEeccc
Confidence 99866654 4699999987
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.2e-05 Score=81.52 Aligned_cols=196 Identities=15% Similarity=0.200 Sum_probs=106.8
Q ss_pred eEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCC
Q 003363 167 KLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGS 245 (826)
Q Consensus 167 ~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~ 245 (826)
.|+++.+++ ..++..|+ ...+....+......| ..+.+||||++++.. .+
T Consensus 6 ~l~~V~~~~--~~~v~viD~~t~~~~~~i~~~~~~h---------~~~~~s~Dgr~~yv~-~r----------------- 56 (369)
T PF02239_consen 6 NLFYVVERG--SGSVAVIDGATNKVVARIPTGGAPH---------AGLKFSPDGRYLYVA-NR----------------- 56 (369)
T ss_dssp GEEEEEEGG--GTEEEEEETTT-SEEEEEE-STTEE---------EEEE-TT-SSEEEEE-ET-----------------
T ss_pred cEEEEEecC--CCEEEEEECCCCeEEEEEcCCCCce---------eEEEecCCCCEEEEE-cC-----------------
Confidence 345554442 23566777 4445555555443433 467899999986654 32
Q ss_pred CCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceee
Q 003363 246 SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL 325 (826)
Q Consensus 246 ~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~ 325 (826)
...|-++|+.++++..- +.......++++||||++ ++...+
T Consensus 57 --------------------------dg~vsviD~~~~~~v~~--i~~G~~~~~i~~s~DG~~----~~v~n~------- 97 (369)
T PF02239_consen 57 --------------------------DGTVSVIDLATGKVVAT--IKVGGNPRGIAVSPDGKY----VYVANY------- 97 (369)
T ss_dssp --------------------------TSEEEEEETTSSSEEEE--EE-SSEEEEEEE--TTTE----EEEEEE-------
T ss_pred --------------------------CCeEEEEECCcccEEEE--EecCCCcceEEEcCCCCE----EEEEec-------
Confidence 25799999999886543 344456678999999996 644432
Q ss_pred eeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc-eecCCC-------CccccCceecCCCCEEEEEeccCCCCC
Q 003363 326 GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTES-------ISSAFFPRFSPDGKFLVFLSAKSSVDS 397 (826)
Q Consensus 326 g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~-------~~~~~~p~~SpDG~~l~f~s~~~~~~~ 397 (826)
.+..+..+|. ++.+. +.+... ........-||+...+++.-.+
T Consensus 98 -------~~~~v~v~D~-----------------~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd----- 148 (369)
T PF02239_consen 98 -------EPGTVSVIDA-----------------ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD----- 148 (369)
T ss_dssp -------ETTEEEEEET-----------------TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT-----
T ss_pred -------CCCceeEecc-----------------ccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc-----
Confidence 2237888887 44443 233221 1122344567888876666544
Q ss_pred CCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCC
Q 003363 398 GAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS 477 (826)
Q Consensus 398 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~t 477 (826)
..++|++|........ +..+. -+.| +....|+|||++++...... ..+-.+|..+
T Consensus 149 -----~~~I~vVdy~d~~~~~--------~~~i~---~g~~-------~~D~~~dpdgry~~va~~~s--n~i~viD~~~ 203 (369)
T PF02239_consen 149 -----TGEIWVVDYSDPKNLK--------VTTIK---VGRF-------PHDGGFDPDGRYFLVAANGS--NKIAVIDTKT 203 (369)
T ss_dssp -----TTEEEEEETTTSSCEE--------EEEEE-----TT-------EEEEEE-TTSSEEEEEEGGG--TEEEEEETTT
T ss_pred -----CCeEEEEEeccccccc--------eeeec---cccc-------ccccccCcccceeeeccccc--ceeEEEeecc
Confidence 3679999976542211 01110 0111 22457999999887654333 3777889888
Q ss_pred CcEEEec
Q 003363 478 GELLRIT 484 (826)
Q Consensus 478 g~~~~lt 484 (826)
++...+.
T Consensus 204 ~k~v~~i 210 (369)
T PF02239_consen 204 GKLVALI 210 (369)
T ss_dssp TEEEEEE
T ss_pred ceEEEEe
Confidence 8776654
|
... |
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00028 Score=70.45 Aligned_cols=237 Identities=12% Similarity=0.124 Sum_probs=125.6
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (826)
.++||..++-+ ++.| .+.+++. ..+.....+.... .++....|--....+.+.++.++..-+++.
T Consensus 22 fs~~G~~lits-s~dD--------sl~LYd~-~~g~~~~ti~skk-----yG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 22 FSDDGLLLITS-SEDD--------SLRLYDS-LSGKQVKTINSKK-----YGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred ecCCCCEEEEe-cCCC--------eEEEEEc-CCCceeeEeeccc-----ccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 47888877553 3322 4556654 2333333333333 345666665555566666653333223333
Q ss_pred EecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCC
Q 003363 184 LWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW 263 (826)
Q Consensus 184 i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 263 (826)
+.+ .+-.|.+. +.+..| ..++-||-+...+..+.+++.+ .|+....+..-.. ...-..-.+|+|.
T Consensus 87 l~d-NkylRYF~---GH~~~V------~sL~~sP~~d~FlS~S~D~tvr--LWDlR~~~cqg~l--~~~~~pi~AfDp~- 151 (311)
T KOG1446|consen 87 LHD-NKYLRYFP---GHKKRV------NSLSVSPKDDTFLSSSLDKTVR--LWDLRVKKCQGLL--NLSGRPIAAFDPE- 151 (311)
T ss_pred eec-CceEEEcC---CCCceE------EEEEecCCCCeEEecccCCeEE--eeEecCCCCceEE--ecCCCcceeECCC-
Confidence 333 33333332 333333 7889999998888888777665 3432211110000 0011112235544
Q ss_pred CccC-CCccCceEEEEEccC---CceEecc-CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceE
Q 003363 264 GETY-AGKRQPSLFVININS---GEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (826)
Q Consensus 264 g~~~-~~~~~~~l~v~d~~~---g~~~~l~-~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~ 338 (826)
|-.+ .+.+...|.++|+.. |-.+... +.+.......+.||||||. |+... ..+.+|
T Consensus 152 GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~----iLlsT---------------~~s~~~ 212 (311)
T KOG1446|consen 152 GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS----ILLST---------------NASFIY 212 (311)
T ss_pred CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE----EEEEe---------------CCCcEE
Confidence 2222 122233677777643 2222221 1123445668999999998 88776 345799
Q ss_pred EEEcccccchhhhhhhhcCCCCCCcce-ecCCC---CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCC
Q 003363 339 AVRVSLYKSEASELELKESSSEDLPVV-NLTES---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (826)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~~-~Lt~~---~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~ 414 (826)
.+|. -.|... .++.. .....+..|+|||++|+-.+.+ .+|++|++.++
T Consensus 213 ~lDA-----------------f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~d-----------g~i~vw~~~tg 264 (311)
T KOG1446|consen 213 LLDA-----------------FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDD-----------GTIHVWNLETG 264 (311)
T ss_pred EEEc-----------------cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCC-----------CcEEEEEcCCC
Confidence 9997 444432 22222 1123578899999987644433 46999999887
Q ss_pred CCC
Q 003363 415 GNF 417 (826)
Q Consensus 415 ~~~ 417 (826)
.+.
T Consensus 265 ~~v 267 (311)
T KOG1446|consen 265 KKV 267 (311)
T ss_pred cEe
Confidence 764
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.7e-05 Score=88.54 Aligned_cols=98 Identities=12% Similarity=0.092 Sum_probs=66.2
Q ss_pred ccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCC-CccCCCccCceEEEEEccCCceEec
Q 003363 210 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW-GETYAGKRQPSLFVININSGEVQAV 288 (826)
Q Consensus 210 ~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-g~~~~~~~~~~l~v~d~~~g~~~~l 288 (826)
+..++||-++ .|+..+.+++.+. |.... +.-.....|..++.-+.|.|-- ..-+.|.-+..+-+|++...++...
T Consensus 372 ILDlSWSKn~-fLLSSSMDKTVRL--Wh~~~-~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W 447 (712)
T KOG0283|consen 372 ILDLSWSKNN-FLLSSSMDKTVRL--WHPGR-KECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW 447 (712)
T ss_pred heecccccCC-eeEeccccccEEe--ecCCC-cceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEee
Confidence 3678999877 6888888887764 33221 1112223467777777777743 2234555578899999988888776
Q ss_pred cCCCCCCccceEEEeeCCCCCccEEEEEe
Q 003363 289 KGIPKSLSVGQVVWAPLNEGLHQYLVFVG 317 (826)
Q Consensus 289 ~~~~~~~~~~~~~wSPDg~~~~~~lvf~~ 317 (826)
..-...+..++|+|||+. .+..+
T Consensus 448 --~Dl~~lITAvcy~PdGk~----avIGt 470 (712)
T KOG0283|consen 448 --NDLRDLITAVCYSPDGKG----AVIGT 470 (712)
T ss_pred --hhhhhhheeEEeccCCce----EEEEE
Confidence 444557889999999997 66555
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00017 Score=71.76 Aligned_cols=247 Identities=15% Similarity=0.139 Sum_probs=140.1
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003363 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (826)
Q Consensus 105 s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (826)
|+-|..+|. +.....+.+++..+-+ -++-|+..- ..+....||+||++|+..+... ...+
T Consensus 32 s~~G~~lAv---------Gc~nG~vvI~D~~T~~-iar~lsaH~-----~pi~sl~WS~dgr~LltsS~D~-----si~l 91 (405)
T KOG1273|consen 32 SRWGDYLAV---------GCANGRVVIYDFDTFR-IARMLSAHV-----RPITSLCWSRDGRKLLTSSRDW-----SIKL 91 (405)
T ss_pred ccCcceeee---------eccCCcEEEEEccccc-hhhhhhccc-----cceeEEEecCCCCEeeeecCCc-----eeEE
Confidence 566666554 3344556666664432 223333332 3488999999999999876654 4556
Q ss_pred e--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecC
Q 003363 185 W--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 262 (826)
Q Consensus 185 ~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 262 (826)
| ..|...+.+.++..+ .+..|.|-.+..+.+.--.
T Consensus 92 wDl~~gs~l~rirf~spv----------~~~q~hp~k~n~~va~~~~--------------------------------- 128 (405)
T KOG1273|consen 92 WDLLKGSPLKRIRFDSPV----------WGAQWHPRKRNKCVATIME--------------------------------- 128 (405)
T ss_pred EeccCCCceeEEEccCcc----------ceeeeccccCCeEEEEEec---------------------------------
Confidence 6 345566666666655 6788999766665553321
Q ss_pred CCccCCCccCceEEEEEccCCceEecc-CCCCC--CccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEE
Q 003363 263 WGETYAGKRQPSLFVININSGEVQAVK-GIPKS--LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 339 (826)
Q Consensus 263 ~g~~~~~~~~~~l~v~d~~~g~~~~l~-~~~~~--~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~ 339 (826)
..-+++++..++-+.|. ..+++ .......|.+-|+. |+... ..+.|..
T Consensus 129 ----------~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~y----IitGt---------------sKGkllv 179 (405)
T KOG1273|consen 129 ----------ESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKY----IITGT---------------SKGKLLV 179 (405)
T ss_pred ----------CCcEEEEecCCceeeccCCCccccccccccccccCCCCE----EEEec---------------CcceEEE
Confidence 12344555545555552 11111 12333468888885 65433 2236777
Q ss_pred EEcccccchhhhhhhhcCCCCCCcce---ecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCC---C
Q 003363 340 VRVSLYKSEASELELKESSSEDLPVV---NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP---T 413 (826)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~~~---~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~---~ 413 (826)
+|. .+-++. +++. ...+....+|-.|+.|++...++ -|..++.. .
T Consensus 180 ~~a-----------------~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDR-----------vIR~ye~~di~~ 230 (405)
T KOG1273|consen 180 YDA-----------------ETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDR-----------VIRTYEISDIDD 230 (405)
T ss_pred Eec-----------------chheeeeeeeech-heeeeEEEEeccCcEEEEecCCc-----------eEEEEehhhhcc
Confidence 776 343322 2332 23567789999999999888764 24444432 1
Q ss_pred ---CCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC
Q 003363 414 ---NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 488 (826)
Q Consensus 414 ---~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~ 488 (826)
++.........+++. .- .-...+||.||.+++.++ ...-.||.+....|.+.++..+..
T Consensus 231 ~~r~~e~e~~~K~qDvVN---k~-----------~Wk~ccfs~dgeYv~a~s--~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 231 EGRDGEVEPEHKLQDVVN---KL-----------QWKKCCFSGDGEYVCAGS--ARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred cCccCCcChhHHHHHHHh---hh-----------hhhheeecCCccEEEecc--ccceeEEEEecCCcceeeeecCCc
Confidence 111110011111111 10 112567899998776654 445578999988999888876544
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00028 Score=75.69 Aligned_cols=240 Identities=15% Similarity=0.178 Sum_probs=132.7
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCC--CeEEEEecCCCCC
Q 003363 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSG--SKLLVVRNPENES 178 (826)
Q Consensus 101 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG--~~la~~~~~~~~~ 178 (826)
.|++|+|-...+... ...+..+++.........|.. .++...++||.+ -.||+-.-..+|.
T Consensus 130 ~~qfs~dEsl~arlv----------~nev~f~~~~~f~~~~~kl~~-------~~i~~f~lSpgp~~~~vAvyvPe~kGa 192 (566)
T KOG2315|consen 130 VPQFSIDESLAARLV----------SNEVQFYDLGSFKTIQHKLSV-------SGITMLSLSPGPEPPFVAVYVPEKKGA 192 (566)
T ss_pred ccccccchhhhhhhh----------cceEEEEecCCccceeeeeec-------cceeeEEecCCCCCceEEEEccCCCCC
Confidence 566677766555432 234455554332222333332 346677777764 4565544444577
Q ss_pred CeEEEEec-C--CceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCC
Q 003363 179 PIQFELWS-Q--SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 255 (826)
Q Consensus 179 ~~~~~i~~-~--~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (826)
+....|+. . +....+-.-+.-..++ -...|.+-|+-|+.++....+.. ..+|.
T Consensus 193 Pa~vri~~~~~~~~~~~~a~ksFFkadk-------vqm~WN~~gt~LLvLastdVDkt----------------n~SYY- 248 (566)
T KOG2315|consen 193 PASVRIYKYPEEGQHQPVANKSFFKADK-------VQMKWNKLGTALLVLASTDVDKT----------------NASYY- 248 (566)
T ss_pred CcEEEEeccccccccchhhhccccccce-------eEEEeccCCceEEEEEEEeecCC----------------Ccccc-
Confidence 77777772 2 2111111111111112 26789999999888765442210 01111
Q ss_pred cceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCC
Q 003363 256 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 335 (826)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~ 335 (826)
+...||.++++ |+-..+. ......+.++.|+|+|+. .+.+-- --+.
T Consensus 249 ---------------GEq~Lyll~t~-g~s~~V~-L~k~GPVhdv~W~~s~~E----F~VvyG-------------fMPA 294 (566)
T KOG2315|consen 249 ---------------GEQTLYLLATQ-GESVSVP-LLKEGPVHDVTWSPSGRE----FAVVYG-------------FMPA 294 (566)
T ss_pred ---------------ccceEEEEEec-CceEEEe-cCCCCCceEEEECCCCCE----EEEEEe-------------cccc
Confidence 33789999998 4433332 455667889999999998 544320 0223
Q ss_pred ceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 336 ALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 336 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
.+-++|+ ....+-.+.++ .-....|||-|+.|++..-. +-..++-+||...-+
T Consensus 295 kvtifnl-----------------r~~~v~df~eg--pRN~~~fnp~g~ii~lAGFG--------NL~G~mEvwDv~n~K 347 (566)
T KOG2315|consen 295 KVTIFNL-----------------RGKPVFDFPEG--PRNTAFFNPHGNIILLAGFG--------NLPGDMEVWDVPNRK 347 (566)
T ss_pred eEEEEcC-----------------CCCEeEeCCCC--CccceEECCCCCEEEEeecC--------CCCCceEEEeccchh
Confidence 4556665 33333333333 33457899999998877643 234678889987733
Q ss_pred CCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEE
Q 003363 416 NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 463 (826)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~ 463 (826)
. +..-. +.+..-+.|+|||++++.++.
T Consensus 348 ~--i~~~~-------------------a~~tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 348 L--IAKFK-------------------AANTTVFEWSPDGEYFLTATT 374 (566)
T ss_pred h--ccccc-------------------cCCceEEEEcCCCcEEEEEec
Confidence 2 11110 001234579999998876554
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.6e-05 Score=72.59 Aligned_cols=176 Identities=15% Similarity=0.214 Sum_probs=117.4
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--c
Q 003363 109 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--S 186 (826)
Q Consensus 109 ~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~ 186 (826)
+.++|+.+...+..+...+.+.+++++....++..+...+ +++..+-|.-..+.|+...+.+ ..++| .
T Consensus 104 k~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ght-----g~Ir~v~wc~eD~~iLSSadd~-----tVRLWD~r 173 (334)
T KOG0278|consen 104 KAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT-----GGIRTVLWCHEDKCILSSADDK-----TVRLWDHR 173 (334)
T ss_pred eeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCC-----CcceeEEEeccCceEEeeccCC-----ceEEEEec
Confidence 5677877777788888888888888877766666655555 6789999988888887653332 46677 4
Q ss_pred CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCcc
Q 003363 187 QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGET 266 (826)
Q Consensus 187 ~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~ 266 (826)
.+...+.+.....+ .++..|+||+.|... ..
T Consensus 174 Tgt~v~sL~~~s~V----------tSlEvs~dG~ilTia-~g-------------------------------------- 204 (334)
T KOG0278|consen 174 TGTEVQSLEFNSPV----------TSLEVSQDGRILTIA-YG-------------------------------------- 204 (334)
T ss_pred cCcEEEEEecCCCC----------cceeeccCCCEEEEe-cC--------------------------------------
Confidence 56666666666666 789999999865442 21
Q ss_pred CCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEccccc
Q 003363 267 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 346 (826)
Q Consensus 267 ~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 346 (826)
..|..||..+=.+ |+...-...+.+.+.+|+-. ++..+ +....+|.+|.
T Consensus 205 ------ssV~Fwdaksf~~--lKs~k~P~nV~SASL~P~k~-----~fVaG--------------ged~~~~kfDy---- 253 (334)
T KOG0278|consen 205 ------SSVKFWDAKSFGL--LKSYKMPCNVESASLHPKKE-----FFVAG--------------GEDFKVYKFDY---- 253 (334)
T ss_pred ------ceeEEeccccccc--eeeccCccccccccccCCCc-----eEEec--------------CcceEEEEEec----
Confidence 3456677665332 21122234566788999875 43333 23346888888
Q ss_pred chhhhhhhhcCCCCCCcceec--CCCCccccCceecCCCCEEE
Q 003363 347 SEASELELKESSSEDLPVVNL--TESISSAFFPRFSPDGKFLV 387 (826)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~L--t~~~~~~~~p~~SpDG~~l~ 387 (826)
.+|+..-. ..+.+.+...+|||||..-+
T Consensus 254 -------------~TgeEi~~~nkgh~gpVhcVrFSPdGE~yA 283 (334)
T KOG0278|consen 254 -------------NTGEEIGSYNKGHFGPVHCVRFSPDGELYA 283 (334)
T ss_pred -------------cCCceeeecccCCCCceEEEEECCCCceee
Confidence 66665444 45677789999999998433
|
|
| >KOG1516 consensus Carboxylesterase and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.5e-06 Score=98.80 Aligned_cols=127 Identities=23% Similarity=0.264 Sum_probs=85.8
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cc--hHHHHHHHHCCcEEEEECCCCC-CCCchhhhhcCCCCCCcch
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SY--SKSLAFLSSVGYSLLIVNYRGS-LGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~--~~~~~~la~~G~~Vl~~d~rG~-~g~G~~~~~~~~~~~~~~~ 651 (826)
+...+|.|......+ .|++|++|||....... .+ ......+..+..+|+.++||.. -|+........++++ .
T Consensus 97 LylNV~tp~~~~~~~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~gN~---g 172 (545)
T KOG1516|consen 97 LYLNVYTPQGCSESK-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAPGNL---G 172 (545)
T ss_pred ceEEEeccCCCccCC-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCCCCcc---c
Confidence 566788887532222 99999999988654432 22 2233345566899999999953 233222212223443 4
Q ss_pred HHHHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHh--CCCceeEEEecCCcc
Q 003363 652 VNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLC 706 (826)
Q Consensus 652 ~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~~ 706 (826)
+.|+..|++|+.++ ..-|+++|.|+|||.||..+..+... ...+|+.+|..++..
T Consensus 173 l~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~ 232 (545)
T KOG1516|consen 173 LFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNA 232 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccc
Confidence 77999999999885 33799999999999999998776552 124788888777753
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00082 Score=70.32 Aligned_cols=188 Identities=18% Similarity=0.126 Sum_probs=98.3
Q ss_pred EEEEEccCCce-EeccCCCC---CCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 275 LFVININSGEV-QAVKGIPK---SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 275 l~v~d~~~g~~-~~l~~~~~---~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
+++++++.+.. +.+..... .....+....|||+ |+|..-.... .+... ......||++|.
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~-----~wfgt~~~~~--~~~~~-~~~~G~lyr~~p-------- 150 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR-----IWFGDMGYFD--LGKSE-ERPTGSLYRVDP-------- 150 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC-----EEEeCCCccc--cCccc-cCCcceEEEEcC--------
Confidence 45555555554 44321111 12455778899988 8887533100 01100 012236999996
Q ss_pred hhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC-CCCCCcccceeeeeee
Q 003363 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT-NGNFSSLEKIVDVIPV 429 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~ 429 (826)
.++..+.+..+........|||||+.|++..... ..||+++++. +.. +... ...
T Consensus 151 ---------~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~----------~~i~r~~~d~~~g~--~~~~----~~~ 205 (307)
T COG3386 151 ---------DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA----------NRIHRYDLDPATGP--IGGR----RGF 205 (307)
T ss_pred ---------CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC----------CeEEEEecCcccCc--cCCc----ceE
Confidence 5555666666566778899999999888777553 6799998874 111 1000 111
Q ss_pred eeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEE-eecCCEEEEEEeC
Q 003363 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLL-TLDGDNIIAVSSS 508 (826)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~-s~dg~~l~~~~s~ 508 (826)
+.+.. .+| ..-.++...||. |+..+. .+...|-+++.++..+..+.......+...| .++.+.|++++..
T Consensus 206 ~~~~~---~~G----~PDG~~vDadG~-lw~~a~-~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 206 VDFDE---EPG----LPDGMAVDADGN-LWVAAV-WGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred EEccC---CCC----CCCceEEeCCCC-EEEecc-cCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 11111 111 222445556665 444333 2334666677775555555544332333333 3345666666655
Q ss_pred CCCC
Q 003363 509 PVDV 512 (826)
Q Consensus 509 ~~~p 512 (826)
...+
T Consensus 277 ~~~~ 280 (307)
T COG3386 277 SGMS 280 (307)
T ss_pred CCCC
Confidence 5443
|
|
| >PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.4e-06 Score=67.60 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=45.5
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCC
Q 003363 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGF 635 (826)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~ 635 (826)
|.+|....+.|++ . +..+|+++||.... ...|...++.|+++||.|+++|+||.+.+
T Consensus 1 G~~L~~~~w~p~~---~-~k~~v~i~HG~~eh--~~ry~~~a~~L~~~G~~V~~~D~rGhG~S 57 (79)
T PF12146_consen 1 GTKLFYRRWKPEN---P-PKAVVVIVHGFGEH--SGRYAHLAEFLAEQGYAVFAYDHRGHGRS 57 (79)
T ss_pred CcEEEEEEecCCC---C-CCEEEEEeCCcHHH--HHHHHHHHHHHHhCCCEEEEECCCcCCCC
Confidence 4567888888873 2 78999999996543 34688899999999999999999995443
|
Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00044 Score=73.29 Aligned_cols=208 Identities=16% Similarity=0.190 Sum_probs=110.1
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecC-CCccccccCCCcccceeecCCCCeEEEEeecCCCC-C
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS-K 233 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~-~ 233 (826)
+...+|||-|++|++.-... +++|.+...-+++... ..+ ..+.|||.|++|..-+..+... .
T Consensus 35 ~~~~~~SP~G~~l~~~~~~~------V~~~~g~~~~~l~~~~~~~V----------~~~~fSP~~kYL~tw~~~pi~~pe 98 (561)
T COG5354 35 VAYVSESPLGTYLFSEHAAG------VECWGGPSKAKLVRFRHPDV----------KYLDFSPNEKYLVTWSREPIIEPE 98 (561)
T ss_pred hhheeecCcchheehhhccc------eEEccccchhheeeeecCCc----------eecccCcccceeeeeccCCccChh
Confidence 77889999999998754433 6788544333554432 233 6788999999998876655410 0
Q ss_pred ----CCcc--------CCCCCCCCCCcc----CCCC-CCcceeecCCCccCCCccCceEEEEEccCCceEecc-CCCCCC
Q 003363 234 ----PTFS--------LGSTKGGSSDKD----CNSW-KGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSL 295 (826)
Q Consensus 234 ----~~~~--------~~~~~~~~~~~~----~~~~-~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~-~~~~~~ 295 (826)
+.+. ...+........ ...| .-++...+..+..+ -...|++.++ |+...... ..-...
T Consensus 99 ~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv---v~~sl~i~e~-t~n~~~~p~~~lr~~ 174 (561)
T COG5354 99 IEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV---VGSSLYIHEI-TDNIEEHPFKNLRPV 174 (561)
T ss_pred hccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh---ccCeEEEEec-CCccccCchhhcccc
Confidence 1111 000100011110 1123 11222232222222 2367888887 66554431 011124
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCcccc
Q 003363 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 375 (826)
Q Consensus 296 ~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~ 375 (826)
++..+.|||-|.. ..|+|-..+ + .+.++.+.++.++ .+......+--.....
T Consensus 175 gi~dFsisP~~n~--~~la~~tPE----k------~~kpa~~~i~sIp----------------~~s~l~tk~lfk~~~~ 226 (561)
T COG5354 175 GILDFSISPEGNH--DELAYWTPE----K------LNKPAMVRILSIP----------------KNSVLVTKNLFKVSGV 226 (561)
T ss_pred ceeeEEecCCCCC--ceEEEEccc----c------CCCCcEEEEEEcc----------------CCCeeeeeeeEeeccc
Confidence 6778999997654 115665422 2 2345566666663 1222222222223345
Q ss_pred CceecCCCCEEEEEeccCCCCCC-CCcccceEEEEeCC
Q 003363 376 FPRFSPDGKFLVFLSAKSSVDSG-AHSATDSLHRIDWP 412 (826)
Q Consensus 376 ~p~~SpDG~~l~f~s~~~~~~~g-~~~~~~~l~~~d~~ 412 (826)
...|.+.|++|.++..+.. .++ .-.+...||++++.
T Consensus 227 qLkW~~~g~~ll~l~~t~~-ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHT-KSNKSYFGESNLYLLRIT 263 (561)
T ss_pred EEEEecCCceEEEEEEEee-ecccceeccceEEEEeec
Confidence 6889999999998876653 111 11234678988876
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.2e-05 Score=78.34 Aligned_cols=208 Identities=16% Similarity=0.126 Sum_probs=116.3
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
....+++++||..|+....+ ..+++|+ ... ..+.+. ...|+.| .++.|||||+.|++++.
T Consensus 146 ~~k~vaf~~~gs~latgg~d-----g~lRv~~~Ps~-~t~l~e-~~~~~eV------~DL~FS~dgk~lasig~------ 206 (398)
T KOG0771|consen 146 QQKVVAFNGDGSKLATGGTD-----GTLRVWEWPSM-LTILEE-IAHHAEV------KDLDFSPDGKFLASIGA------ 206 (398)
T ss_pred cceEEEEcCCCCEeeecccc-----ceEEEEecCcc-hhhhhh-HhhcCcc------ccceeCCCCcEEEEecC------
Confidence 45788999999999986443 3677774 221 111111 2334455 89999999999999843
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceE-eccCCCCCCccceEEEeeCCCCCccE
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~-~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (826)
....||+.++|... ..++...+.......|+-|+.+ ...
T Consensus 207 ---------------------------------------d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~-~~l 246 (398)
T KOG0771|consen 207 ---------------------------------------DSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQ-ETL 246 (398)
T ss_pred ---------------------------------------CceEEEEeccCchhhhcCCcccchhhhhceecccCCC-ceE
Confidence 36788998888433 3322333445556678888743 111
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
.++....... . + +.+++..++-+ .-...++.......+.+...|+||++++..+++
T Consensus 247 ~laa~~~~~~-~--v-----~~~~~~~w~~~----------------~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 247 RLAASQFPGG-G--V-----RLCDISLWSGS----------------NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred EEEEecCCCC-c--e-----eEEEeeeeccc----------------cccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 3333211111 1 1 11123333210 223444555555568889999999999988875
Q ss_pred CCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003363 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (826)
. ++-+++..+=+.. .++.. .+...+..+.|+||.+.+.- .+.+....+..
T Consensus 303 G-----------sVai~~~~~lq~~----------~~vk~--------aH~~~VT~ltF~Pdsr~~~s-vSs~~~~~v~~ 352 (398)
T KOG0771|consen 303 G-----------SVAIYDAKSLQRL----------QYVKE--------AHLGFVTGLTFSPDSRYLAS-VSSDNEAAVTK 352 (398)
T ss_pred C-----------cEEEEEeceeeee----------Eeehh--------hheeeeeeEEEcCCcCcccc-cccCCceeEEE
Confidence 3 3556654332211 11111 11223457789999886643 33344556666
Q ss_pred EEC
Q 003363 473 VNV 475 (826)
Q Consensus 473 vdl 475 (826)
+..
T Consensus 353 l~v 355 (398)
T KOG0771|consen 353 LAV 355 (398)
T ss_pred Eee
Confidence 554
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.2e-05 Score=80.58 Aligned_cols=140 Identities=13% Similarity=0.180 Sum_probs=84.3
Q ss_pred CceEEEEEccCCceE-eccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 272 QPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 272 ~~~l~v~d~~~g~~~-~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
+..|-+||+.+++.+ .+ ......+.+++|||||+. |+-++ .+..|+++..
T Consensus 699 d~Ti~lWDl~~~~~~~~l--~gHtdqIf~~AWSpdGr~----~AtVc---------------KDg~~rVy~P-------- 749 (1012)
T KOG1445|consen 699 DSTIELWDLANAKLYSRL--VGHTDQIFGIAWSPDGRR----IATVC---------------KDGTLRVYEP-------- 749 (1012)
T ss_pred cceeeeeehhhhhhhhee--ccCcCceeEEEECCCCcc----eeeee---------------cCceEEEeCC--------
Confidence 467999999988755 33 334446788999999999 99887 3346777775
Q ss_pred hhhhhcCCCCCCcceecCCCC----ccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeee
Q 003363 351 ELELKESSSEDLPVVNLTESI----SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 426 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~----~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 426 (826)
..+ .+.+.++. .......|-=||+.|+....+. ....+|-+||.++=....+....-++
T Consensus 750 ---------rs~-e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk-------~SeRQv~~Y~Aq~l~~~pl~t~~lDv 812 (1012)
T KOG1445|consen 750 ---------RSR-EQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK-------SSERQVQMYDAQTLDLRPLYTQVLDV 812 (1012)
T ss_pred ---------CCC-CCccccCCCCccCcceeEEEEecCcEEEEecccc-------cchhhhhhhhhhhccCCcceeeeecc
Confidence 222 22232222 2345678999999998877665 23456777876653332222222222
Q ss_pred eeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003363 427 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (826)
Q Consensus 427 ~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl 475 (826)
.+ +..-+.+.+|...|+++. .|+..++.+.+
T Consensus 813 ap----------------s~LvP~YD~Ds~~lfltG--KGD~~v~~yEv 843 (1012)
T KOG1445|consen 813 AP----------------SPLVPHYDYDSNVLFLTG--KGDRFVNMYEV 843 (1012)
T ss_pred cC----------------ccccccccCCCceEEEec--CCCceEEEEEe
Confidence 22 222344667888666653 34555555554
|
|
| >PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00024 Score=76.32 Aligned_cols=105 Identities=17% Similarity=0.294 Sum_probs=63.4
Q ss_pred CCCCcEEEEEcCCCCCCCCccch--HHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHc-
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYS--KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM- 665 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~--~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~- 665 (826)
..++|.||.=.=.+|+.+...|. ..+-.....|..|..+-+.-.+ ...+.++|+..+....+++
T Consensus 66 ~~krP~vViDPRAGHGpGIGGFK~dSevG~AL~~GHPvYFV~F~p~P-------------~pgQTl~DV~~ae~~Fv~~V 132 (581)
T PF11339_consen 66 PTKRPFVVIDPRAGHGPGIGGFKPDSEVGVALRAGHPVYFVGFFPEP-------------EPGQTLEDVMRAEAAFVEEV 132 (581)
T ss_pred CCCCCeEEeCCCCCCCCCccCCCcccHHHHHHHcCCCeEEEEecCCC-------------CCCCcHHHHHHHHHHHHHHH
Confidence 45678777653222222222332 2334444668888777655322 2233577776654433332
Q ss_pred --CCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEe-cCCcc
Q 003363 666 --GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA-RNPLC 706 (826)
Q Consensus 666 --~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~-~~p~~ 706 (826)
-.-+..|..|+|-|.||++++++++.+|+++.-+|+ .+|+.
T Consensus 133 ~~~hp~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPls 176 (581)
T PF11339_consen 133 AERHPDAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLS 176 (581)
T ss_pred HHhCCCCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCcc
Confidence 112334899999999999999999999998876554 44543
|
Their function is unknown. |
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.1e-05 Score=78.95 Aligned_cols=169 Identities=15% Similarity=0.126 Sum_probs=94.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEec-C-CCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-P-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~-~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
+......|.|+.+....... .++.-.+|.+.+.....+++-. + ++..-. .....|+|||+.||-...++
T Consensus 269 a~lt~g~whP~~k~~FlT~s-~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~------~tsC~~nrdg~~iAagc~DG-- 339 (641)
T KOG0772|consen 269 AELTCGCWHPDNKEEFLTCS-YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP------VTSCAWNRDGKLIAAGCLDG-- 339 (641)
T ss_pred eeeeccccccCcccceEEec-CCCcEEEEecCCchhheeEEeeccCCCcccC------ceeeecCCCcchhhhcccCC--
Confidence 34667789999988754443 3365556655544444444432 1 111111 15678999999988765443
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEec---c-CCCCCCccceEEEeeCCC
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV---K-GIPKSLSVGQVVWAPLNE 307 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l---~-~~~~~~~~~~~~wSPDg~ 307 (826)
.|-.|+..+-.++.. . .......+..++||+||+
T Consensus 340 ------------------------------------------SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 340 ------------------------------------------SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred ------------------------------------------ceeeeecCCcccccceEeeeccCCCCceeEEEeccccc
Confidence 344455322211111 0 122233567899999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC---CccccCceecCCCC
Q 003363 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES---ISSAFFPRFSPDGK 384 (826)
Q Consensus 308 ~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~---~~~~~~p~~SpDG~ 384 (826)
. |+..+ .+..|.++|+. +..++.....+ ........||||.+
T Consensus 378 ~----LlSRg---------------~D~tLKvWDLr----------------q~kkpL~~~tgL~t~~~~tdc~FSPd~k 422 (641)
T KOG0772|consen 378 Y----LLSRG---------------FDDTLKVWDLR----------------QFKKPLNVRTGLPTPFPGTDCCFSPDDK 422 (641)
T ss_pred h----hhhcc---------------CCCceeeeecc----------------ccccchhhhcCCCccCCCCccccCCCce
Confidence 9 87666 23367778873 22332222111 12345688999988
Q ss_pred EEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 385 FLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 385 ~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
.|+..+.-.+ | .....|+.+|..+
T Consensus 423 li~TGtS~~~---~--~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 423 LILTGTSAPN---G--MTAGTLFFFDRMT 446 (641)
T ss_pred EEEecccccC---C--CCCceEEEEeccc
Confidence 6665544332 1 2234688888655
|
|
| >PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00011 Score=74.48 Aligned_cols=209 Identities=13% Similarity=0.095 Sum_probs=115.1
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHH-HCCc----EEEEECCCCCCCCchhh--------hhcCCCCCC----cchHHHH
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLS-SVGY----SLLIVNYRGSLGFGEEA--------LQSLPGKVG----SQDVNDV 655 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la-~~G~----~Vl~~d~rG~~g~G~~~--------~~~~~~~~~----~~~~~D~ 655 (826)
-..||+||..++ ...+..++..+. +.|. .++.++.-|.-.+...+ .+-...+.. .....-+
T Consensus 12 tPTifihG~~gt--~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~wl 89 (255)
T PF06028_consen 12 TPTIFIHGYGGT--ANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAKWL 89 (255)
T ss_dssp EEEEEE--TTGG--CCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHHHH
T ss_pred CcEEEECCCCCC--hhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHHHH
Confidence 347889996655 557788888886 6664 24444444422111111 010111111 1124456
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC-----ceeEEEecCCccchhhhccCCCCCCchhhhhccCcC
Q 003363 656 LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 730 (826)
Q Consensus 656 ~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (826)
..++.+|.++..+ +++-++||||||..++.++..+.. .+...|.+++.++-..... +.... ....
T Consensus 90 ~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~--~~~~~---~~~~--- 159 (255)
T PF06028_consen 90 KKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMN--DDQNQ---NDLN--- 159 (255)
T ss_dssp HHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCS--C-TTT---T-CS---
T ss_pred HHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCcccccc--ccchh---hhhc---
Confidence 6778888887544 789999999999999998887532 4566666666554321100 00000 0000
Q ss_pred CccCCCCCC--hhhHHHHhhcCcccccCCCCCcEEEEEeC------CCCCCCcHHHHHHHHHHHhCCCCEEEEEeCC--C
Q 003363 731 KDSFTESPS--VEDLTRFHSKSPISHISKVKTPTIFLLGA------QDLRVPVSNGLQYARALREKGVETKVIVFPN--D 800 (826)
Q Consensus 731 ~~~~~~~~~--~~~~~~~~~~sp~~~~~~i~~PvLii~G~------~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~--~ 800 (826)
...|. ......+... ...--.-.+.+|-|.|. .|-.||...++.+...++......+-.++.| +
T Consensus 160 ----~~gp~~~~~~y~~l~~~--~~~~~p~~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a 233 (255)
T PF06028_consen 160 ----KNGPKSMTPMYQDLLKN--RRKNFPKNIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKSYQEKTVTGKDA 233 (255)
T ss_dssp ----TT-BSS--HHHHHHHHT--HGGGSTTT-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSEEEEEEEESGGG
T ss_pred ----ccCCcccCHHHHHHHHH--HHhhCCCCeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCceEEEEEECCCC
Confidence 00011 1122222111 00111124679999998 8999999999999888888777788888876 4
Q ss_pred CCCCCCCCCHHHHHHHHHHHH
Q 003363 801 VHGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 801 ~H~~~~~~~~~~~~~~i~~w~ 821 (826)
.|.-.. ++. ++.+.|.+||
T Consensus 234 ~HS~Lh-eN~-~V~~~I~~FL 252 (255)
T PF06028_consen 234 QHSQLH-ENP-QVDKLIIQFL 252 (255)
T ss_dssp SCCGGG-CCH-HHHHHHHHHH
T ss_pred ccccCC-CCH-HHHHHHHHHh
Confidence 786543 443 6777787776
|
; PDB: 3LP5_A 3FLE_A 3DS8_A. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0016 Score=66.75 Aligned_cols=237 Identities=16% Similarity=0.168 Sum_probs=130.1
Q ss_pred ccEEEEeCC-CCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 155 GASAVVPSP-SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 155 ~~~~~~~SP-dG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
..-.++.+| ++.-++|.+..+ ...++++ .+++..+.+..+.+.|- ++--.|||||++|+ ++|....
T Consensus 6 RgH~~a~~p~~~~avafaRRPG---~~~~v~D~~~g~~~~~~~a~~gRHF-------yGHg~fs~dG~~Ly-tTEnd~~- 73 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPG---TFALVFDCRTGQLLQRLWAPPGRHF-------YGHGVFSPDGRLLY-TTENDYE- 73 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCC---cEEEEEEcCCCceeeEEcCCCCCEE-------ecCEEEcCCCCEEE-EeccccC-
Confidence 345678899 556666666543 2344444 55666655554444331 14567999999664 4444311
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC-CCCCCccceEEEeeCCCCCcc
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~-~~~~~~~~~~~wSPDg~~~~~ 311 (826)
.++..|-|+|... ..+++.. ....+..-++.|.|||+.
T Consensus 74 -------------------------------------~g~G~IgVyd~~~-~~~ri~E~~s~GIGPHel~l~pDG~t--- 112 (305)
T PF07433_consen 74 -------------------------------------TGRGVIGVYDAAR-GYRRIGEFPSHGIGPHELLLMPDGET--- 112 (305)
T ss_pred -------------------------------------CCcEEEEEEECcC-CcEEEeEecCCCcChhhEEEcCCCCE---
Confidence 1457899999883 3333321 233456668999999998
Q ss_pred EEEEEee--cC----cceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc-ee--cCC--CCccccCceec
Q 003363 312 YLVFVGW--SS----ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VN--LTE--SISSAFFPRFS 380 (826)
Q Consensus 312 ~lvf~~~--~~----~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~--Lt~--~~~~~~~p~~S 380 (826)
|+..-- .. +..++.+. . -...|.++|. .+|++ .+ |.. +.-+++..++.
T Consensus 113 -LvVANGGI~Thpd~GR~kLNl~--t-M~psL~~ld~-----------------~sG~ll~q~~Lp~~~~~lSiRHLa~~ 171 (305)
T PF07433_consen 113 -LVVANGGIETHPDSGRAKLNLD--T-MQPSLVYLDA-----------------RSGALLEQVELPPDLHQLSIRHLAVD 171 (305)
T ss_pred -EEEEcCCCccCcccCceecChh--h-cCCceEEEec-----------------CCCceeeeeecCccccccceeeEEec
Confidence 876421 11 11222221 1 1236777876 55653 33 533 44578899999
Q ss_pred CCCCEEEEEeccCCCCCCCCcccce-EEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEE
Q 003363 381 PDGKFLVFLSAKSSVDSGAHSATDS-LHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 459 (826)
Q Consensus 381 pDG~~l~f~s~~~~~~~g~~~~~~~-l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~ 459 (826)
+||.- +|...-. |......- |.+. ..++...+.....+. ...+.+ | ..++++++||..+.
T Consensus 172 ~~G~V-~~a~Q~q----g~~~~~~PLva~~--~~g~~~~~~~~p~~~--------~~~l~~-Y---~gSIa~~~~g~~ia 232 (305)
T PF07433_consen 172 GDGTV-AFAMQYQ----GDPGDAPPLVALH--RRGGALRLLPAPEEQ--------WRRLNG-Y---IGSIAADRDGRLIA 232 (305)
T ss_pred CCCcE-EEEEecC----CCCCccCCeEEEE--cCCCcceeccCChHH--------HHhhCC-c---eEEEEEeCCCCEEE
Confidence 99973 4443332 22122222 2223 232322111111000 011221 2 34778999999888
Q ss_pred EEEEeCCeEEEEEEECCCCcEEEecCC
Q 003363 460 LSSIWGSSQVIISVNVSSGELLRITPA 486 (826)
Q Consensus 460 ~~~~~~~~~~l~~vdl~tg~~~~lt~~ 486 (826)
+++-..+...+| |..+|++.....-
T Consensus 233 ~tsPrGg~~~~~--d~~tg~~~~~~~l 257 (305)
T PF07433_consen 233 VTSPRGGRVAVW--DAATGRLLGSVPL 257 (305)
T ss_pred EECCCCCEEEEE--ECCCCCEeecccc
Confidence 877666666666 8889988766543
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.7e-05 Score=78.96 Aligned_cols=269 Identities=12% Similarity=0.068 Sum_probs=146.1
Q ss_pred EEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcee
Q 003363 112 MFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLE 191 (826)
Q Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~ 191 (826)
.|..+...++.+.....|.+|.+.+...+... .+....+.+....+-++|+.++-.+++ +..++|.+.. .+
T Consensus 182 ~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~----tLaGs~g~it~~d~d~~~~~~iAas~d--~~~r~Wnvd~---~r 252 (459)
T KOG0288|consen 182 EFLRNSDTLATGGSDRIIKLWNVLGEKSELIS----TLAGSLGNITSIDFDSDNKHVIAASND--KNLRLWNVDS---LR 252 (459)
T ss_pred EEccCcchhhhcchhhhhhhhhcccchhhhhh----hhhccCCCcceeeecCCCceEEeecCC--Cceeeeeccc---hh
Confidence 34444445666666777777766444322221 111122568889999999988765443 3333444332 22
Q ss_pred EEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCC-CCCccCCCCC--CcceeecCCCccCC
Q 003363 192 KEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG-SSDKDCNSWK--GQGDWEEDWGETYA 268 (826)
Q Consensus 192 ~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~d~g~~~~ 268 (826)
-.-.+ .++.++| ..+.|.-....++-.+.+.+.+.+.....+-... .....+.... ..-.++.+
T Consensus 253 ~~~TL-sGHtdkV------t~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH------ 319 (459)
T KOG0288|consen 253 LRHTL-SGHTDKV------TAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGH------ 319 (459)
T ss_pred hhhhh-cccccce------eeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecc------
Confidence 11112 1244444 6777777766666666555544322221110000 0000000000 11112211
Q ss_pred CccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccch
Q 003363 269 GKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 348 (826)
Q Consensus 269 ~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 348 (826)
....|-.||+.++..+.. .+....+.++..++||.. |...+ |+..|-++|+
T Consensus 320 --~DkkvRfwD~Rs~~~~~s--v~~gg~vtSl~ls~~g~~----lLsss---------------RDdtl~viDl------ 370 (459)
T KOG0288|consen 320 --FDKKVRFWDIRSADKTRS--VPLGGRVTSLDLSMDGLE----LLSSS---------------RDDTLKVIDL------ 370 (459)
T ss_pred --cccceEEEeccCCceeeE--eecCcceeeEeeccCCeE----Eeeec---------------CCCceeeeec------
Confidence 334588899888776665 466668889999999998 76655 4446778887
Q ss_pred hhhhhhhcCCCCCCcceecCCCC-----ccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccce
Q 003363 349 ASELELKESSSEDLPVVNLTESI-----SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 423 (826)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~Lt~~~-----~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 423 (826)
.+.+++...... .......|||||.+++-.+.+ ..||+|++.+++........
T Consensus 371 -----------Rt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~d-----------gsv~iW~v~tgKlE~~l~~s 428 (459)
T KOG0288|consen 371 -----------RTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSAD-----------GSVYIWSVFTGKLEKVLSLS 428 (459)
T ss_pred -----------ccccEEEEeeccccccccccceeEECCCCceeeeccCC-----------CcEEEEEccCceEEEEeccC
Confidence 555555443221 125678899999999877665 45999999887653211111
Q ss_pred eeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003363 424 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (826)
Q Consensus 424 ~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (826)
... ..+..++|.|-|+.++- ++......||
T Consensus 429 ----------~s~-------~aI~s~~W~~sG~~Lls-adk~~~v~lW 458 (459)
T KOG0288|consen 429 ----------TSN-------AAITSLSWNPSGSGLLS-ADKQKAVTLW 458 (459)
T ss_pred ----------CCC-------cceEEEEEcCCCchhhc-ccCCcceEec
Confidence 100 02446789998887643 3333333343
|
|
| >COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00054 Score=63.28 Aligned_cols=139 Identities=12% Similarity=0.088 Sum_probs=91.8
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhc
Q 003363 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 726 (826)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 726 (826)
+.....+|..+.++..+... ++.+.|++||.|+.++++++.+....++++++++|.---...
T Consensus 38 w~~P~~~dWi~~l~~~v~a~---~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~~~--------------- 99 (181)
T COG3545 38 WEAPVLDDWIARLEKEVNAA---EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSRPE--------------- 99 (181)
T ss_pred CCCCCHHHHHHHHHHHHhcc---CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCccccc---------------
Confidence 44445777777776655542 456999999999999999998766689999999885310000
Q ss_pred cCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCC
Q 003363 727 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 806 (826)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~ 806 (826)
........++|.. ..++--|.++++..+|+.|+++++..+.+++.. .++....+||....
T Consensus 100 --------------~~~~~~~tf~~~p-~~~lpfps~vvaSrnDp~~~~~~a~~~a~~wgs-----~lv~~g~~GHiN~~ 159 (181)
T COG3545 100 --------------IRPKHLMTFDPIP-REPLPFPSVVVASRNDPYVSYEHAEDLANAWGS-----ALVDVGEGGHINAE 159 (181)
T ss_pred --------------cchhhccccCCCc-cccCCCceeEEEecCCCCCCHHHHHHHHHhccH-----hheecccccccchh
Confidence 0001111222221 123446899999999999999999999999875 67888889995432
Q ss_pred --CCCHHHHHHHHHHHHHH
Q 003363 807 --PQSDFESFLNIGLWFKK 823 (826)
Q Consensus 807 --~~~~~~~~~~i~~w~~~ 823 (826)
.....+.+..+.+++.+
T Consensus 160 sG~g~wpeg~~~l~~~~s~ 178 (181)
T COG3545 160 SGFGPWPEGYALLAQLLSR 178 (181)
T ss_pred hcCCCcHHHHHHHHHHhhh
Confidence 23333445555555543
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0096 Score=61.83 Aligned_cols=264 Identities=14% Similarity=0.156 Sum_probs=138.2
Q ss_pred cEEEEeCCCCCeEEEEec-----CCCCCCeEEEEecCCc--eeEEEecCCCccccccCCCcccceeecCCCCeEEEEeec
Q 003363 156 ASAVVPSPSGSKLLVVRN-----PENESPIQFELWSQSQ--LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 228 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~-----~~~~~~~~~~i~~~~~--~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~ 228 (826)
...+..||||+.++.... ..++...++++|+... ....+.++.++.--+ -........|.|||++++.--.
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~--~~~~~~~~ls~dgk~~~V~N~T 115 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV--VPYKNMFALSADGKFLYVQNFT 115 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B--S--GGGEEE-TTSSEEEEEEES
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee--cccccceEEccCCcEEEEEccC
Confidence 556788999999976542 2235667899996554 455566665411100 0012567899999988775332
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCC
Q 003363 229 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308 (826)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~ 308 (826)
....+-|+|++.+++..-..+|+- . ..=|-|+.
T Consensus 116 ------------------------------------------Pa~SVtVVDl~~~kvv~ei~~PGC--~---~iyP~~~~ 148 (342)
T PF06433_consen 116 ------------------------------------------PATSVTVVDLAAKKVVGEIDTPGC--W---LIYPSGNR 148 (342)
T ss_dssp ------------------------------------------SSEEEEEEETTTTEEEEEEEGTSE--E---EEEEEETT
T ss_pred ------------------------------------------CCCeEEEEECCCCceeeeecCCCE--E---EEEecCCC
Confidence 237899999999987544113331 1 11133322
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc-ee---cCCC--CccccCceecCC
Q 003363 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VN---LTES--ISSAFFPRFSPD 382 (826)
Q Consensus 309 ~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~---Lt~~--~~~~~~p~~SpD 382 (826)
. +... | ++..+..+.++ +.|+. ++ +... ..-...|.++.+
T Consensus 149 ~---F~~l-------------C--~DGsl~~v~Ld----------------~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 149 G---FSML-------------C--GDGSLLTVTLD----------------ADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp E---EEEE-------------E--TTSCEEEEEET----------------STSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred c---eEEE-------------e--cCCceEEEEEC----------------CCCCEeEeeccccCCCCcccccccceECC
Confidence 0 2222 4 33466666664 22322 22 1111 112356778888
Q ss_pred CCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeecc-C-CCCCcccccCCCCCCccccCCCEEEE
Q 003363 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA-E-GDCFPGLYSSSILSNPWLSDGCTMLL 460 (826)
Q Consensus 383 G~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~-~~~f~g~~~~~~~~~~ws~Dg~~l~~ 460 (826)
+.+++|.+-. ..||..|+.+++.... .-..+.... . ++-.|| +...+++.+...+||+
T Consensus 195 ~~~~~F~Sy~-----------G~v~~~dlsg~~~~~~-----~~~~~~t~~e~~~~WrPG----G~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 195 GGRLYFVSYE-----------GNVYSADLSGDSAKFG-----KPWSLLTDAEKADGWRPG----GWQLIAYHAASGRLYV 254 (342)
T ss_dssp TTEEEEEBTT-----------SEEEEEEETTSSEEEE-----EEEESS-HHHHHTTEEE-----SSS-EEEETTTTEEEE
T ss_pred CCeEEEEecC-----------CEEEEEeccCCccccc-----CcccccCccccccCcCCc----ceeeeeeccccCeEEE
Confidence 8889998865 3589999877553211 111111100 1 122333 2334567776777877
Q ss_pred EEEeC-------CeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 003363 461 SSIWG-------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 524 (826)
Q Consensus 461 ~~~~~-------~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~ 524 (826)
....+ ....||.+|+++++...-.+-........++.|.+=+++..+..+ ..|++.|..+++
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~--~~l~v~D~~tGk 323 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGD--GTLDVYDAATGK 323 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTT--TEEEEEETTT--
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCC--CeEEEEeCcCCc
Confidence 66532 456899999999875533332222223456777775665554322 347777765543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00015 Score=76.14 Aligned_cols=230 Identities=12% Similarity=0.077 Sum_probs=141.9
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~ 235 (826)
+-++.+|-.-++++.. +++...+|.|...+....+.+++--. -|..+.....+|||+.|+...+
T Consensus 422 VcAvtIS~~trhVyTg---GkgcVKVWdis~pg~k~PvsqLdcl~-----rdnyiRSckL~pdgrtLivGGe-------- 485 (705)
T KOG0639|consen 422 VCAVTISNPTRHVYTG---GKGCVKVWDISQPGNKSPVSQLDCLN-----RDNYIRSCKLLPDGRTLIVGGE-------- 485 (705)
T ss_pred EEEEEecCCcceeEec---CCCeEEEeeccCCCCCCccccccccC-----cccceeeeEecCCCceEEeccc--------
Confidence 5567777777766432 11222233333223322333322110 1223478889999999987533
Q ss_pred ccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC-CCCCCccceEEEeeCCCCCccEEE
Q 003363 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVWAPLNEGLHQYLV 314 (826)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~-~~~~~~~~~~~wSPDg~~~~~~lv 314 (826)
...|-+||++....+.-.. +.........+.|||.+ +.
T Consensus 486 ------------------------------------astlsiWDLAapTprikaeltssapaCyALa~spDak-----vc 524 (705)
T KOG0639|consen 486 ------------------------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK-----VC 524 (705)
T ss_pred ------------------------------------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc-----ee
Confidence 2568889998766543211 22223455678999999 88
Q ss_pred EEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCC
Q 003363 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 394 (826)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~ 394 (826)
|.+ |.+ ..|.++|+. +...++++..+...+.....|+||.+|....-
T Consensus 525 Fsc------------csd--GnI~vwDLh----------------nq~~VrqfqGhtDGascIdis~dGtklWTGGl--- 571 (705)
T KOG0639|consen 525 FSC------------CSD--GNIAVWDLH----------------NQTLVRQFQGHTDGASCIDISKDGTKLWTGGL--- 571 (705)
T ss_pred eee------------ccC--CcEEEEEcc----------------cceeeecccCCCCCceeEEecCCCceeecCCC---
Confidence 987 333 368888883 44557788888888889999999999853222
Q ss_pred CCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003363 395 VDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (826)
Q Consensus 395 ~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vd 474 (826)
.+.+..||+..+...+.. + |.+.+.++...|.+.+|.+... ..+++++.
T Consensus 572 --------DntvRcWDlregrqlqqh----------------d----F~SQIfSLg~cP~~dWlavGMe---ns~vevlh 620 (705)
T KOG0639|consen 572 --------DNTVRCWDLREGRQLQQH----------------D----FSSQIFSLGYCPTGDWLAVGME---NSNVEVLH 620 (705)
T ss_pred --------ccceeehhhhhhhhhhhh----------------h----hhhhheecccCCCccceeeecc---cCcEEEEe
Confidence 256889998875542211 1 1123456677899998877643 33456666
Q ss_pred CCCCcEEEecCCCCCeeeEEEeecCCEEEEEE
Q 003363 475 VSSGELLRITPAESNFSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 475 l~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ 506 (826)
..+.+..+|.....-+-..-|+..|++++-+.
T Consensus 621 ~skp~kyqlhlheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 621 TSKPEKYQLHLHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred cCCccceeecccccEEEEEEecccCceeeecC
Confidence 65666667776666555567888898766554
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0005 Score=70.51 Aligned_cols=176 Identities=18% Similarity=0.145 Sum_probs=98.0
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (826)
..+++||||+.+|++.... ....|++....+ ..+.+
T Consensus 27 ~s~AvS~dg~~~A~v~~~~-----------------------------------------~~~~L~~~~~~~-~~~~~-- 62 (253)
T PF10647_consen 27 TSPAVSPDGSRVAAVSEGD-----------------------------------------GGRSLYVGPAGG-PVRPV-- 62 (253)
T ss_pred cceEECCCCCeEEEEEEcC-----------------------------------------CCCEEEEEcCCC-cceee--
Confidence 6899999999999997222 346788887654 44443
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC
Q 003363 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 370 (826)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 370 (826)
..+ .....++|+++|. +.++...... .....+... .......+...
T Consensus 63 ~~g-~~l~~PS~d~~g~-----~W~v~~~~~~-------------~~~~~~~~~---------------g~~~~~~v~~~ 108 (253)
T PF10647_consen 63 LTG-GSLTRPSWDPDGW-----VWTVDDGSGG-------------VRVVRDSAS---------------GTGEPVEVDWP 108 (253)
T ss_pred ccC-CccccccccCCCC-----EEEEEcCCCc-------------eEEEEecCC---------------CcceeEEeccc
Confidence 122 2667899999966 5555432111 111112100 12222223222
Q ss_pred -C-ccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCC--CCC-CCCcccceeeeeeeeeccCCCCCcccccCC
Q 003363 371 -I-SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP--TNG-NFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 445 (826)
Q Consensus 371 -~-~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~--~~~-~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~ 445 (826)
. +.+...++||||++++++.... +..+|++.-+. .++ ...+.... .+.. . -...
T Consensus 109 ~~~~~I~~l~vSpDG~RvA~v~~~~--------~~~~v~va~V~r~~~g~~~~l~~~~-~~~~---~---------~~~~ 167 (253)
T PF10647_consen 109 GLRGRITALRVSPDGTRVAVVVEDG--------GGGRVYVAGVVRDGDGVPRRLTGPR-RVAP---P---------LLSD 167 (253)
T ss_pred ccCCceEEEEECCCCcEEEEEEecC--------CCCeEEEEEEEeCCCCCcceeccce-Eecc---c---------ccCc
Confidence 1 1678899999999999999775 23567766543 333 11221111 1110 0 0013
Q ss_pred CCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC
Q 003363 446 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA 486 (826)
Q Consensus 446 ~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~ 486 (826)
+..+.|.+++..+++....+..... .+..+++..+.++..
T Consensus 168 v~~v~W~~~~~L~V~~~~~~~~~~~-~v~~dG~~~~~l~~~ 207 (253)
T PF10647_consen 168 VTDVAWSDDSTLVVLGRSAGGPVVR-LVSVDGGPSTPLPSV 207 (253)
T ss_pred ceeeeecCCCEEEEEeCCCCCceeE-EEEccCCcccccCCC
Confidence 4478899999755554443333333 567778877777433
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=9e-05 Score=80.15 Aligned_cols=169 Identities=17% Similarity=0.198 Sum_probs=100.5
Q ss_pred CCcEEEEEcCCCCCCCCccch-HHHHHHHHCC--cEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHH--c
Q 003363 591 CDPLIVVLHGGPHSVSLSSYS-KSLAFLSSVG--YSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID--M 665 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~-~~~~~la~~G--~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~--~ 665 (826)
..|+++++||++.......+. .+.+.|.-.| ..|..+|++-..| . ..-....+-...+.++.+. .
T Consensus 175 ~spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~ig--G--------~nI~h~ae~~vSf~r~kvlei~ 244 (784)
T KOG3253|consen 175 ASPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPIG--G--------ANIKHAAEYSVSFDRYKVLEIT 244 (784)
T ss_pred CCceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCCCC--C--------cchHHHHHHHHHHhhhhhhhhh
Confidence 458999999988322222222 3333443334 4456667663211 0 0001113344444443333 2
Q ss_pred CCCCCCcEEEEEecchHHHHHHHHHhCCCc-eeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHH
Q 003363 666 GLANPSKVTVVGGSHGGFLTTHLIGQAPDK-FVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLT 744 (826)
Q Consensus 666 ~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~-~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (826)
+......|.|+|.|+|+.++.+......|. +.++|++.=..+ ..+ +. .+.++
T Consensus 245 gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~------~vd----------gp------rgirD----- 297 (784)
T KOG3253|consen 245 GEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLD------TVD----------GP------RGIRD----- 297 (784)
T ss_pred ccCCCCceEEEecccCceeeEEeccccCCceEEEEEEeccccc------CCC----------cc------cCCcc-----
Confidence 445667899999999987777766544443 455554421110 000 00 01111
Q ss_pred HHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCC
Q 003363 745 RFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 807 (826)
Q Consensus 745 ~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~ 807 (826)
+.+-.++.|+|++.|.+|..+++...+++.++++. +++++++.+++|.+..+
T Consensus 298 --------E~Lldmk~PVLFV~Gsnd~mcspn~ME~vreKMqA---~~elhVI~~adhsmaip 349 (784)
T KOG3253|consen 298 --------EALLDMKQPVLFVIGSNDHMCSPNSMEEVREKMQA---EVELHVIGGADHSMAIP 349 (784)
T ss_pred --------hhhHhcCCceEEEecCCcccCCHHHHHHHHHHhhc---cceEEEecCCCccccCC
Confidence 12234679999999999999999999999999987 48999999999998643
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.019 Score=70.96 Aligned_cols=131 Identities=12% Similarity=0.090 Sum_probs=67.7
Q ss_pred ccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccce----eeeeeeeeccCCCCCcccccCCCCCC
Q 003363 374 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI----VDVIPVVQCAEGDCFPGLYSSSILSN 449 (826)
Q Consensus 374 ~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~f~g~~~~~~~~~ 449 (826)
.....++|||++|+..... ..+|+++|+.+++...+..+. ..+..+.. .++.-....-.....+
T Consensus 742 P~GIavspdG~~LYVADs~----------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~--~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSE----------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGD--HDGVGSEVLLQHPLGV 809 (1057)
T ss_pred ccEEEEeCCCCEEEEEECC----------CCeEEEEECCCCcEEEEEecccccCcccccccC--CCCchhhhhccCCcee
Confidence 3457899999987655433 367999998876532211100 00000000 0000000000123467
Q ss_pred ccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC--------------CeeeEEEeecCCEEEEEEeCCCCCCeE
Q 003363 450 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--------------NFSWSLLTLDGDNIIAVSSSPVDVPQV 515 (826)
Q Consensus 450 ~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~--------------~~~~~~~s~dg~~l~~~~s~~~~p~~l 515 (826)
++++||+ ||++. .++..|..+|.+++.+..+..... ......++++|+ +++ +... -..|
T Consensus 810 avd~dG~-LYVAD--s~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyV-aDt~--Nn~I 882 (1057)
T PLN02919 810 LCAKDGQ-IYVAD--SYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFV-ADTN--NSLI 882 (1057)
T ss_pred eEeCCCc-EEEEE--CCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEE-EECC--CCEE
Confidence 7899997 65543 345568888988888776643210 112235666675 433 3322 2257
Q ss_pred EEEeeccc
Q 003363 516 KYGYFVDK 523 (826)
Q Consensus 516 ~~~~~~~~ 523 (826)
.++++.++
T Consensus 883 rvid~~~~ 890 (1057)
T PLN02919 883 RYLDLNKG 890 (1057)
T ss_pred EEEECCCC
Confidence 77776554
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.6e-05 Score=79.01 Aligned_cols=135 Identities=12% Similarity=0.197 Sum_probs=83.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEE-ecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEF-HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~-~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
+.++...|||||.-|+.+.++ .++.+| ..|-.+... +....+ .+++|.|+...|+|...
T Consensus 105 ~A~~~gRW~~dGtgLlt~GED-----G~iKiWSrsGMLRStl~Q~~~~v----------~c~~W~p~S~~vl~c~g---- 165 (737)
T KOG1524|consen 105 AAISSGRWSPDGAGLLTAGED-----GVIKIWSRSGMLRSTVVQNEESI----------RCARWAPNSNSIVFCQG---- 165 (737)
T ss_pred hhhhhcccCCCCceeeeecCC-----ceEEEEeccchHHHHHhhcCcee----------EEEEECCCCCceEEecC----
Confidence 457788999999999876444 388999 445443221 222233 79999999999999632
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccC-CceEeccCCCCCCccceEEEeeCCCCCc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS-GEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~-g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
.++++-.+.- .++.+. ...+.-+-...|+|.+.-
T Consensus 166 -----------------------------------------~h~~IKpL~~n~k~i~W--kAHDGiiL~~~W~~~s~l-- 200 (737)
T KOG1524|consen 166 -----------------------------------------GHISIKPLAANSKIIRW--RAHDGLVLSLSWSTQSNI-- 200 (737)
T ss_pred -----------------------------------------CeEEEeecccccceeEE--eccCcEEEEeecCccccc--
Confidence 3555555542 233333 344445567889999886
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEE
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFL 386 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l 386 (826)
|+..+ .++..-++|. .+...-+-..+...+.+.+|.||-.++
T Consensus 201 --I~sgG---------------ED~kfKvWD~-----------------~G~~Lf~S~~~ey~ITSva~npd~~~~ 242 (737)
T KOG1524|consen 201 --IASGG---------------EDFRFKIWDA-----------------QGANLFTSAAEEYAITSVAFNPEKDYL 242 (737)
T ss_pred --eeecC---------------CceeEEeecc-----------------cCcccccCChhccceeeeeecccccee
Confidence 55544 2234456664 333333333446678899999994333
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00086 Score=66.51 Aligned_cols=233 Identities=10% Similarity=0.024 Sum_probs=126.4
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (826)
.+|||..++ ++..+..|++|.+.+.-.+.-.+.... +.+....|.+||+.|+-...+. .+.
T Consensus 55 F~P~gs~~a---------SgG~Dr~I~LWnv~gdceN~~~lkgHs-----gAVM~l~~~~d~s~i~S~gtDk-----~v~ 115 (338)
T KOG0265|consen 55 FHPDGSCFA---------SGGSDRAIVLWNVYGDCENFWVLKGHS-----GAVMELHGMRDGSHILSCGTDK-----TVR 115 (338)
T ss_pred ECCCCCeEe---------ecCCcceEEEEeccccccceeeecccc-----ceeEeeeeccCCCEEEEecCCc-----eEE
Confidence 378887553 233456677777655555444444343 5689999999999998876544 456
Q ss_pred Eec--CCceeEEEecCCCccccccC--CCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCccee
Q 003363 184 LWS--QSQLEKEFHVPQTVHGSVYA--DGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (826)
Q Consensus 184 i~~--~~~~~~~~~~~~~~~g~v~~--~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (826)
.|+ .|+..+-.......-+.+.. -+.+.-.+=|+||+.=++-...+.. .+.. ..+--...+.|
T Consensus 116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~------------~~t~-~~kyqltAv~f 182 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA------------IKTF-ENKYQLTAVGF 182 (338)
T ss_pred EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch------------hhcc-ccceeEEEEEe
Confidence 663 33332222211111111110 0111233445555544443221110 0000 00011113445
Q ss_pred ecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEE
Q 003363 260 EEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 339 (826)
Q Consensus 260 ~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~ 339 (826)
..+..+...+.-+++|-+||+..++..-+. ....-.+..+.-||+|.. +.-.+ -++.+.+
T Consensus 183 ~d~s~qv~sggIdn~ikvWd~r~~d~~~~l-sGh~DtIt~lsls~~gs~----llsns---------------Md~tvrv 242 (338)
T KOG0265|consen 183 KDTSDQVISGGIDNDIKVWDLRKNDGLYTL-SGHADTITGLSLSRYGSF----LLSNS---------------MDNTVRV 242 (338)
T ss_pred cccccceeeccccCceeeeccccCcceEEe-ecccCceeeEEeccCCCc----ccccc---------------ccceEEE
Confidence 555445556666789999999777766552 222336788999999998 76554 2235666
Q ss_pred EEcccccchhhhhhhhcCCCCCCcc-eecCCC-----CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 340 VRVSLYKSEASELELKESSSEDLPV-VNLTES-----ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~-----~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
+|...- ..++. ..+..+ ...-....|||+++++.+.+.+. .+|+||..+
T Consensus 243 wd~rp~--------------~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr-----------~vyvwd~~~ 297 (338)
T KOG0265|consen 243 WDVRPF--------------APSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADR-----------FVYVWDTTS 297 (338)
T ss_pred EEeccc--------------CCCCceEEEeecchhhhhhhcceeeccCCCCccccccccc-----------eEEEeeccc
Confidence 665211 22222 333332 12345679999999998888764 478887555
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0016 Score=70.00 Aligned_cols=151 Identities=17% Similarity=0.219 Sum_probs=89.3
Q ss_pred eEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc-eecCCCCccccCc
Q 003363 299 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFP 377 (826)
Q Consensus 299 ~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~~~~~~~p 377 (826)
++.|.+-|.. |...+..+- .+.+..| -....||.+++ ++... ..|. ..+.+...
T Consensus 222 qm~WN~~gt~----LLvLastdV-Dktn~SY--YGEq~Lyll~t-----------------~g~s~~V~L~-k~GPVhdv 276 (566)
T KOG2315|consen 222 QMKWNKLGTA----LLVLASTDV-DKTNASY--YGEQTLYLLAT-----------------QGESVSVPLL-KEGPVHDV 276 (566)
T ss_pred EEEeccCCce----EEEEEEEee-cCCCccc--cccceEEEEEe-----------------cCceEEEecC-CCCCceEE
Confidence 6789999998 766543222 2223332 35678999997 42222 2333 35678899
Q ss_pred eecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCE
Q 003363 378 RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 457 (826)
Q Consensus 378 ~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~ 457 (826)
.|||+|+.++..- |+ .-..+-++|+...-...+..+. -..+-|+|.|+.
T Consensus 277 ~W~~s~~EF~Vvy-------Gf--MPAkvtifnlr~~~v~df~egp----------------------RN~~~fnp~g~i 325 (566)
T KOG2315|consen 277 TWSPSGREFAVVY-------GF--MPAKVTIFNLRGKPVFDFPEGP----------------------RNTAFFNPHGNI 325 (566)
T ss_pred EECCCCCEEEEEE-------ec--ccceEEEEcCCCCEeEeCCCCC----------------------ccceEECCCCCE
Confidence 9999999887555 21 2345666776653221111111 135669999998
Q ss_pred EEEEEEeC--CeEEEEEEECCCCcEEEecCCC-CCeeeEEEeecCCEEEEEEeCC
Q 003363 458 MLLSSIWG--SSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSP 509 (826)
Q Consensus 458 l~~~~~~~--~~~~l~~vdl~tg~~~~lt~~~-~~~~~~~~s~dg~~l~~~~s~~ 509 (826)
|++..-.. |...+| |+.+ .+.|.... .+-....|+|||.+++....+|
T Consensus 326 i~lAGFGNL~G~mEvw--Dv~n--~K~i~~~~a~~tt~~eW~PdGe~flTATTaP 376 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVW--DVPN--RKLIAKFKAANTTVFEWSPDGEYFLTATTAP 376 (566)
T ss_pred EEEeecCCCCCceEEE--eccc--hhhccccccCCceEEEEcCCCcEEEEEeccc
Confidence 87765443 444555 5544 23333222 1235568999999988776554
|
|
| >PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0005 Score=65.08 Aligned_cols=180 Identities=18% Similarity=0.251 Sum_probs=105.2
Q ss_pred EEEEEcC-CCCCCCCccch-HHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 594 LIVVLHG-GPHSVSLSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 594 ~vv~~HG-g~~~~~~~~~~-~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
++|++-| |++ ..+. ..+..|+++|+.|+.+|-+- | |. ......+...|+...+++..++. ..+
T Consensus 4 ~~v~~SGDgGw----~~~d~~~a~~l~~~G~~VvGvdsl~---Y---fw---~~rtP~~~a~Dl~~~i~~y~~~w--~~~ 68 (192)
T PF06057_consen 4 LAVFFSGDGGW----RDLDKQIAEALAKQGVPVVGVDSLR---Y---FW---SERTPEQTAADLARIIRHYRARW--GRK 68 (192)
T ss_pred EEEEEeCCCCc----hhhhHHHHHHHHHCCCeEEEechHH---H---Hh---hhCCHHHHHHHHHHHHHHHHHHh--CCc
Confidence 5666766 332 2333 46789999999999999432 1 10 11222334788888888888873 468
Q ss_pred cEEEEEecchHHHHHHHHHhCCC----ceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHh
Q 003363 672 KVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 747 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (826)
+|.|+|+|+|+-+.-.+..+.|. +++.+++++|-......+ ...+|. +. .... .
T Consensus 69 ~vvLiGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~~~dFei---hv~~wl-----g~---------~~~~-----~ 126 (192)
T PF06057_consen 69 RVVLIGYSFGADVLPFIYNRLPAALRARVAQVVLLSPSTTADFEI---HVSGWL-----GM---------GGDD-----A 126 (192)
T ss_pred eEEEEeecCCchhHHHHHhhCCHHHHhheeEEEEeccCCcceEEE---Ehhhhc-----CC---------CCCc-----c
Confidence 99999999999887777776664 677888887743211100 011111 11 0000 0
Q ss_pred hcCcccccCCCC-CcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 748 SKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 748 ~~sp~~~~~~i~-~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
...+...+.++. .|++.|+|++|.-. +...++. ..++.+..||+.| |.. +-....+.|++-++
T Consensus 127 ~~~~~pei~~l~~~~v~CiyG~~E~d~-------~cp~l~~--~~~~~i~lpGgHH-fd~--dy~~La~~Il~~l~ 190 (192)
T PF06057_consen 127 AYPVIPEIAKLPPAPVQCIYGEDEDDS-------LCPSLRQ--PGVEVIALPGGHH-FDG--DYDALAKRILDALK 190 (192)
T ss_pred cCCchHHHHhCCCCeEEEEEcCCCCCC-------cCccccC--CCcEEEEcCCCcC-CCC--CHHHHHHHHHHHHh
Confidence 112333445554 58999999988642 1122333 3578889998655 432 22244555655544
|
VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium []. |
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00025 Score=68.27 Aligned_cols=195 Identities=11% Similarity=0.142 Sum_probs=116.3
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCce-eEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL-EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
+...+||-|.++|+.-. ...++++.+-.+. .+.... .+..|.| ..+-|-...+.|+..+++
T Consensus 103 vk~~af~~ds~~lltgg-----~ekllrvfdln~p~App~E~-~ghtg~I------r~v~wc~eD~~iLSSadd------ 164 (334)
T KOG0278|consen 103 VKAVAFSQDSNYLLTGG-----QEKLLRVFDLNRPKAPPKEI-SGHTGGI------RTVLWCHEDKCILSSADD------ 164 (334)
T ss_pred eeeEEecccchhhhccc-----hHHHhhhhhccCCCCCchhh-cCCCCcc------eeEEEeccCceEEeeccC------
Confidence 67788888888887632 2234555422211 111111 1223333 667777777777765443
Q ss_pred CccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003363 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (826)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lv 314 (826)
..+.+||..+|+..+- ..-...+.++..|+||+. |
T Consensus 165 --------------------------------------~tVRLWD~rTgt~v~s--L~~~s~VtSlEvs~dG~i----l- 199 (334)
T KOG0278|consen 165 --------------------------------------KTVRLWDHRTGTEVQS--LEFNSPVTSLEVSQDGRI----L- 199 (334)
T ss_pred --------------------------------------CceEEEEeccCcEEEE--EecCCCCcceeeccCCCE----E-
Confidence 4578899999876654 344557788999999995 4
Q ss_pred EEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCC
Q 003363 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 394 (826)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~ 394 (826)
..+.. +.|-.+|+ .+-...+-..-...+.+...+|+-..++ ...
T Consensus 200 Tia~g---------------ssV~Fwda-----------------ksf~~lKs~k~P~nV~SASL~P~k~~fV--aGg-- 243 (334)
T KOG0278|consen 200 TIAYG---------------SSVKFWDA-----------------KSFGLLKSYKMPCNVESASLHPKKEFFV--AGG-- 243 (334)
T ss_pred EEecC---------------ceeEEecc-----------------ccccceeeccCccccccccccCCCceEE--ecC--
Confidence 44311 14555554 2222222222234567778889875433 311
Q ss_pred CCCCCCcccceEEEEeCCCCCCCCcc-cceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003363 395 VDSGAHSATDSLHRIDWPTNGNFSSL-EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (826)
Q Consensus 395 ~~~g~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~v 473 (826)
....+|.+|..||+.+... .+. | ..+--+.|+|||. +|.+.+.+|..+||..
T Consensus 244 -------ed~~~~kfDy~TgeEi~~~nkgh--------------~-----gpVhcVrFSPdGE-~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 244 -------EDFKVYKFDYNTGEEIGSYNKGH--------------F-----GPVHCVRFSPDGE-LYASGSEDGTIRLWQT 296 (334)
T ss_pred -------cceEEEEEeccCCceeeecccCC--------------C-----CceEEEEECCCCc-eeeccCCCceEEEEEe
Confidence 2256899999998764331 111 1 1234567999997 8888888899999988
Q ss_pred ECC
Q 003363 474 NVS 476 (826)
Q Consensus 474 dl~ 476 (826)
...
T Consensus 297 ~~~ 299 (334)
T KOG0278|consen 297 TPG 299 (334)
T ss_pred cCC
Confidence 753
|
|
| >COG3150 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00037 Score=63.28 Aligned_cols=143 Identities=17% Similarity=0.227 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccch-hhhccCCCCCCchhhhhccCcC
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-ALMVGTTDIPDWCYVESYGSKG 730 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~ 730 (826)
...+++-++.++++. .| ...+|+|-|.|||.+.+++.++. ++++ +.+|.+.. ..|.+..+.+.
T Consensus 42 p~~a~~ele~~i~~~-~~-~~p~ivGssLGGY~At~l~~~~G--irav-~~NPav~P~e~l~gylg~~e----------- 105 (191)
T COG3150 42 PQQALKELEKAVQEL-GD-ESPLIVGSSLGGYYATWLGFLCG--IRAV-VFNPAVRPYELLTGYLGRPE----------- 105 (191)
T ss_pred HHHHHHHHHHHHHHc-CC-CCceEEeecchHHHHHHHHHHhC--Chhh-hcCCCcCchhhhhhhcCCCC-----------
Confidence 455555555555553 22 34899999999999999998863 4444 44554432 22222221111
Q ss_pred CccCCCCCChhhHHHHhhcCcccccCCCCCc-EEEE-EeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCC
Q 003363 731 KDSFTESPSVEDLTRFHSKSPISHISKVKTP-TIFL-LGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 808 (826)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P-vLii-~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~ 808 (826)
..+.+....-+....... -...+..++.| .|.+ .-+.|++....++.+.+... ...+..|++|.|....
T Consensus 106 -n~ytg~~y~le~~hI~~l-~~~~~~~l~~p~~~~lL~qtgDEvLDyr~a~a~y~~~-------~~~V~dgg~H~F~~f~ 176 (191)
T COG3150 106 -NPYTGQEYVLESRHIATL-CVLQFRELNRPRCLVLLSQTGDEVLDYRQAVAYYHPC-------YEIVWDGGDHKFKGFS 176 (191)
T ss_pred -CCCCcceEEeehhhHHHH-HHhhccccCCCcEEEeecccccHHHHHHHHHHHhhhh-------hheeecCCCccccchH
Confidence 011111110000111111 11233445544 4444 44459998877777766654 3557788999986443
Q ss_pred CHHHHHHHHHHHHH
Q 003363 809 SDFESFLNIGLWFK 822 (826)
Q Consensus 809 ~~~~~~~~i~~w~~ 822 (826)
..+++|..|..
T Consensus 177 ---~~l~~i~aF~g 187 (191)
T COG3150 177 ---RHLQRIKAFKG 187 (191)
T ss_pred ---HhHHHHHHHhc
Confidence 45677777753
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00087 Score=74.23 Aligned_cols=236 Identities=15% Similarity=0.089 Sum_probs=129.6
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
.+....|-|-+++++..... |.-++|.+.... ....+ ....|. +..++.+||++..+..+.+.+.+-+
T Consensus 414 y~l~~~Fvpgd~~Iv~G~k~--Gel~vfdlaS~~-l~Eti---~AHdga------IWsi~~~pD~~g~vT~saDktVkfW 481 (888)
T KOG0306|consen 414 YILASKFVPGDRYIVLGTKN--GELQVFDLASAS-LVETI---RAHDGA------IWSISLSPDNKGFVTGSADKTVKFW 481 (888)
T ss_pred cEEEEEecCCCceEEEeccC--CceEEEEeehhh-hhhhh---hccccc------eeeeeecCCCCceEEecCCcEEEEE
Confidence 46677788888777664432 444555554322 11111 122233 3899999999999998877754422
Q ss_pred CccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003363 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (826)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lv 314 (826)
.|... .+.. | .+-.++.+...+.-.+ ...+-.+.+||||+. |+
T Consensus 482 df~l~-------------------~~~~-g--------t~~k~lsl~~~rtLel-----~ddvL~v~~Spdgk~----La 524 (888)
T KOG0306|consen 482 DFKLV-------------------VSVP-G--------TQKKVLSLKHTRTLEL-----EDDVLCVSVSPDGKL----LA 524 (888)
T ss_pred eEEEE-------------------eccC-c--------ccceeeeeccceEEec-----cccEEEEEEcCCCcE----EE
Confidence 22100 0000 0 0001122222222222 224557899999997 77
Q ss_pred EEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCC
Q 003363 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 394 (826)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~ 394 (826)
..- .+....+|.+|. -.-...|.++.-.+.+...|||++.|+..+.+.+
T Consensus 525 VsL-------------LdnTVkVyflDt------------------lKFflsLYGHkLPV~smDIS~DSklivTgSADKn 573 (888)
T KOG0306|consen 525 VSL-------------LDNTVKVYFLDT------------------LKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN 573 (888)
T ss_pred EEe-------------ccCeEEEEEecc------------------eeeeeeecccccceeEEeccCCcCeEEeccCCCc
Confidence 654 234457888873 2334567777777888999999999988877653
Q ss_pred CCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003363 395 VDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (826)
Q Consensus 395 ~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vd 474 (826)
+.+|-++=|.-..-... ++.++..+.|.|+. +++|++..++ .+-.+|
T Consensus 574 -----------VKiWGLdFGDCHKS~fA-------------------HdDSvm~V~F~P~~-~~FFt~gKD~--kvKqWD 620 (888)
T KOG0306|consen 574 -----------VKIWGLDFGDCHKSFFA-------------------HDDSVMSVQFLPKT-HLFFTCGKDG--KVKQWD 620 (888)
T ss_pred -----------eEEeccccchhhhhhhc-------------------ccCceeEEEEcccc-eeEEEecCcc--eEEeec
Confidence 44454444332211111 22455677888965 5778765444 444555
Q ss_pred CCCC-cEEEecCCCCCeeeEEEeecCCEEE
Q 003363 475 VSSG-ELLRITPAESNFSWSLLTLDGDNII 503 (826)
Q Consensus 475 l~tg-~~~~lt~~~~~~~~~~~s~dg~~l~ 503 (826)
-+.= .++.|......+.-...+++|+.++
T Consensus 621 g~kFe~iq~L~~H~~ev~cLav~~~G~~vv 650 (888)
T KOG0306|consen 621 GEKFEEIQKLDGHHSEVWCLAVSPNGSFVV 650 (888)
T ss_pred hhhhhhheeeccchheeeeeEEcCCCCeEE
Confidence 3332 2333333333444456677777444
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00058 Score=71.98 Aligned_cols=209 Identities=12% Similarity=0.116 Sum_probs=124.4
Q ss_pred eeEEEEEEeecCCCCc--cceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCC----ceeEEEecCCC
Q 003363 126 KKFMLSTVISKENENS--VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS----QLEKEFHVPQT 199 (826)
Q Consensus 126 ~~~l~~~~i~~~~~~~--~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~ 199 (826)
+..+.+|+|...+... .+|. -+.. -+.+..-..+|||+.|+.- |....+.||+-. +....+.....
T Consensus 439 kgcVKVWdis~pg~k~PvsqLd--cl~r-dnyiRSckL~pdgrtLivG-----GeastlsiWDLAapTprikaeltssap 510 (705)
T KOG0639|consen 439 KGCVKVWDISQPGNKSPVSQLD--CLNR-DNYIRSCKLLPDGRTLIVG-----GEASTLSIWDLAAPTPRIKAELTSSAP 510 (705)
T ss_pred CCeEEEeeccCCCCCCcccccc--ccCc-ccceeeeEecCCCceEEec-----cccceeeeeeccCCCcchhhhcCCcch
Confidence 4456677775554321 1221 0000 1347788899999999874 323355667322 11112211111
Q ss_pred ccccccCCCcccceeecCCCCeEEEEe-ecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEE
Q 003363 200 VHGSVYADGWFEGISWNSDETLIAYVA-EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVI 278 (826)
Q Consensus 200 ~~g~v~~~~~~~~~~wSPDg~~ia~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~ 278 (826)
....++.|||.+ ++|.+ .++... .|+.........+..+..-..-.+.+.|+-..+++.-++.+.-|
T Consensus 511 ---------aCyALa~spDak-vcFsccsdGnI~--vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcW 578 (705)
T KOG0639|consen 511 ---------ACYALAISPDAK-VCFSCCSDGNIA--VWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCW 578 (705)
T ss_pred ---------hhhhhhcCCccc-eeeeeccCCcEE--EEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeeh
Confidence 115778999997 66665 444333 33332222233334444333344566666667777788899999
Q ss_pred EccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCC
Q 003363 279 NINSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESS 358 (826)
Q Consensus 279 d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 358 (826)
|+..+. ++....-...+.+...+|.|.+ |+..- .++++++...
T Consensus 579 Dlregr--qlqqhdF~SQIfSLg~cP~~dW----lavGM---------------ens~vevlh~---------------- 621 (705)
T KOG0639|consen 579 DLREGR--QLQQHDFSSQIFSLGYCPTGDW----LAVGM---------------ENSNVEVLHT---------------- 621 (705)
T ss_pred hhhhhh--hhhhhhhhhhheecccCCCccc----eeeec---------------ccCcEEEEec----------------
Confidence 997764 2311222335667789999999 87754 3346778776
Q ss_pred CCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 359 SEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 359 ~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
...+..+|..+...+.+..|++-||+++-+..+
T Consensus 622 -skp~kyqlhlheScVLSlKFa~cGkwfvStGkD 654 (705)
T KOG0639|consen 622 -SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKD 654 (705)
T ss_pred -CCccceeecccccEEEEEEecccCceeeecCch
Confidence 555677888888889999999999987655544
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00064 Score=75.14 Aligned_cols=155 Identities=14% Similarity=0.189 Sum_probs=101.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
........+||++.|++..+. ++..+| ..+...+..-. ...+.+ ...+++|-|..+|....+...
T Consensus 63 d~ita~~l~~d~~~L~~a~rs-----~llrv~~L~tgk~irswKa--~He~Pv------i~ma~~~~g~LlAtggaD~~v 129 (775)
T KOG0319|consen 63 DEITALALTPDEEVLVTASRS-----QLLRVWSLPTGKLIRSWKA--IHEAPV------ITMAFDPTGTLLATGGADGRV 129 (775)
T ss_pred hhhheeeecCCccEEEEeecc-----ceEEEEEcccchHhHhHhh--ccCCCe------EEEEEcCCCceEEeccccceE
Confidence 346788999999999887554 477888 34433332211 112222 677899999888777666544
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCc--cCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCC
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGE--TYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 309 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~--~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~ 309 (826)
+ .|+.........++++........|.|+|-. .+++..+..+++||+.++..-..+-......+.+..+++|+..
T Consensus 130 ~--VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~- 206 (775)
T KOG0319|consen 130 K--VWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLE- 206 (775)
T ss_pred E--EEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCce-
Confidence 4 4554444444556666666667778888743 3566678899999998765411111233446789999999998
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCCceEEEEc
Q 003363 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 342 (826)
Q Consensus 310 ~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~ 342 (826)
+++++ |+.-++++|+
T Consensus 207 ---~ls~~---------------RDkvi~vwd~ 221 (775)
T KOG0319|consen 207 ---LLSVG---------------RDKVIIVWDL 221 (775)
T ss_pred ---EEEec---------------cCcEEEEeeh
Confidence 98887 4446888887
|
|
| >PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00015 Score=77.03 Aligned_cols=151 Identities=15% Similarity=0.160 Sum_probs=104.3
Q ss_pred cCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecC-CccchhhhccC--CCCC-Cchh-hhhccCcCCccCCCCCC
Q 003363 665 MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN-PLCNLALMVGT--TDIP-DWCY-VESYGSKGKDSFTESPS 739 (826)
Q Consensus 665 ~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~-p~~~~~~~~~~--~~~~-~~~~-~~~~~~~~~~~~~~~~~ 739 (826)
...++.++..|.|.|-=|..+..+++ ..++++|++.+. ++.++...... .... .|.+ ...|..++.......
T Consensus 166 ~~~~~i~~FvV~GaSKRGWTtWltaa-~D~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~~dY~~~gi~~~l~t-- 242 (367)
T PF10142_consen 166 KFGVNIEKFVVTGASKRGWTTWLTAA-VDPRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAFQDYYNEGITQQLDT-- 242 (367)
T ss_pred hcCCCccEEEEeCCchHhHHHHHhhc-cCcceeEEeeEEEccCCcHHHHHHHHHHhCCCCccchhhhhHhCchhhcCC--
Confidence 34577899999999999999988888 457888877442 33343211100 0001 1211 111222222222222
Q ss_pred hhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 003363 740 VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 819 (826)
Q Consensus 740 ~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~ 819 (826)
.+..+...-.+|+.+.++++.|-||+.|..|++..++.+.-++..|+. +..+.++|+++|.+.. .++.+.+..
T Consensus 243 p~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~pD~~~~y~d~L~G---~K~lr~vPN~~H~~~~----~~~~~~l~~ 315 (367)
T PF10142_consen 243 PEFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFVPDSSNFYYDKLPG---EKYLRYVPNAGHSLIG----SDVVQSLRA 315 (367)
T ss_pred HHHHHHHHhcCHHHHHHhcCccEEEEecCCCceeccCchHHHHhhCCC---CeeEEeCCCCCcccch----HHHHHHHHH
Confidence 233445566899999999999999999999999999999999999986 5788999999999875 467788888
Q ss_pred HHHHHc
Q 003363 820 WFKKYC 825 (826)
Q Consensus 820 w~~~~l 825 (826)
|+...+
T Consensus 316 f~~~~~ 321 (367)
T PF10142_consen 316 FYNRIQ 321 (367)
T ss_pred HHHHHH
Confidence 987653
|
Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily. |
| >KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0015 Score=65.31 Aligned_cols=231 Identities=14% Similarity=0.169 Sum_probs=134.1
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC--c--cchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcc
Q 003363 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL--S--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (826)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~--~--~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~ 650 (826)
.++..++-- +++++|+||-.|.-+..... . .....++.+.++ |.++-+|.+|...-. ..++..+.-.
T Consensus 33 ~v~V~V~Gd----~~~~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~~-fcv~HV~~PGqe~gA----p~~p~~y~yP 103 (326)
T KOG2931|consen 33 VVHVTVYGD----PKGNKPAIITYHDLGLNHKSCFQGFFNFPDMAEILEH-FCVYHVDAPGQEDGA----PSFPEGYPYP 103 (326)
T ss_pred cEEEEEecC----CCCCCceEEEecccccchHhHhHHhhcCHhHHHHHhh-eEEEecCCCccccCC----ccCCCCCCCC
Confidence 366666642 23467889999984432211 1 112356667777 999999999854322 2334444444
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh---------------ccCC
Q 003363 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM---------------VGTT 715 (826)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~---------------~~~~ 715 (826)
.++++.+.+-.+++.. .-+.|.-+|--.|+++-+.+|..||+++-+.|++++....... .+.+
T Consensus 104 smd~LAd~l~~VL~~f--~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~a~gwiew~~~K~~s~~l~~~Gmt 181 (326)
T KOG2931|consen 104 SMDDLADMLPEVLDHF--GLKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDPCAKGWIEWAYNKVSSNLLYYYGMT 181 (326)
T ss_pred CHHHHHHHHHHHHHhc--CcceEEEecccccHHHHHHHHhcChhheeEEEEEecCCCCchHHHHHHHHHHHHHHHhhchh
Confidence 5788888887777763 3467999999999999999999999999999999875432110 0111
Q ss_pred -CCCCchhhhhccCcCCc-----------cCCCCCChhhHHHH----hhcCccc-ccC----CCCCcEEEEEeCCCCCCC
Q 003363 716 -DIPDWCYVESYGSKGKD-----------SFTESPSVEDLTRF----HSKSPIS-HIS----KVKTPTIFLLGAQDLRVP 774 (826)
Q Consensus 716 -~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~----~~~sp~~-~~~----~i~~PvLii~G~~D~~vp 774 (826)
...+......++.+... .+...+...+...+ .....+. ... .++||+|++.|++-+.+
T Consensus 182 ~~~~d~ll~H~Fg~e~~~~~~diVq~Yr~~l~~~~N~~Nl~~fl~ayn~R~DL~~~r~~~~~tlkc~vllvvGd~Sp~~- 260 (326)
T KOG2931|consen 182 QGVKDYLLAHHFGKEELGNNSDIVQEYRQHLGERLNPKNLALFLNAYNGRRDLSIERPKLGTTLKCPVLLVVGDNSPHV- 260 (326)
T ss_pred hhHHHHHHHHHhccccccccHHHHHHHHHHHHhcCChhHHHHHHHHhcCCCCccccCCCcCccccccEEEEecCCCchh-
Confidence 11111111222221111 11122222222222 1111211 111 45699999999998776
Q ss_pred cHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 003363 775 VSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 775 ~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~ 821 (826)
+.+.++..+|.. ....++.+.++|-.....+.. ...+.+.-|+
T Consensus 261 -~~vv~~n~~Ldp--~~ttllk~~d~g~l~~e~qP~-kl~ea~~~Fl 303 (326)
T KOG2931|consen 261 -SAVVECNSKLDP--TYTTLLKMADCGGLVQEEQPG-KLAEAFKYFL 303 (326)
T ss_pred -hhhhhhhcccCc--ccceEEEEcccCCcccccCch-HHHHHHHHHH
Confidence 666677666654 356777888887765543443 3444444444
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0041 Score=60.84 Aligned_cols=148 Identities=15% Similarity=0.173 Sum_probs=91.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
+.+.....+-+.++++.-+. .+-..+|+ .|+..........+ ..+.||++|..+++..++.-
T Consensus 53 GavW~~Did~~s~~liTGSA-----D~t~kLWDv~tGk~la~~k~~~~V----------k~~~F~~~gn~~l~~tD~~m- 116 (327)
T KOG0643|consen 53 GAVWCCDIDWDSKHLITGSA-----DQTAKLWDVETGKQLATWKTNSPV----------KRVDFSFGGNLILASTDKQM- 116 (327)
T ss_pred ceEEEEEecCCcceeeeccc-----cceeEEEEcCCCcEEEEeecCCee----------EEEeeccCCcEEEEEehhhc-
Confidence 34566666667777765332 24566773 44444444444444 68899999999998876541
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEcc-------CCc-eEeccCCCCCCccceEEEe
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-------SGE-VQAVKGIPKSLSVGQVVWA 303 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-------~g~-~~~l~~~~~~~~~~~~~wS 303 (826)
| ....|.++|+. +.+ ...+ ...+..+..+.|+
T Consensus 117 --------------------------------g------~~~~v~~fdi~~~~~~~~s~ep~~kI--~t~~skit~a~Wg 156 (327)
T KOG0643|consen 117 --------------------------------G------YTCFVSVFDIRDDSSDIDSEEPYLKI--PTPDSKITSALWG 156 (327)
T ss_pred --------------------------------C------cceEEEEEEccCChhhhcccCceEEe--cCCccceeeeeec
Confidence 1 12456666665 333 3333 2223466788999
Q ss_pred eCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceec-CCCCccccCceecC
Q 003363 304 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNL-TESISSAFFPRFSP 381 (826)
Q Consensus 304 PDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~L-t~~~~~~~~p~~Sp 381 (826)
|-|+. |+... ....|-.+|+ .+|+ ...- ..+...+...++||
T Consensus 157 ~l~~~----ii~Gh---------------e~G~is~~da-----------------~~g~~~v~s~~~h~~~Ind~q~s~ 200 (327)
T KOG0643|consen 157 PLGET----IIAGH---------------EDGSISIYDA-----------------RTGKELVDSDEEHSSKINDLQFSR 200 (327)
T ss_pred ccCCE----EEEec---------------CCCcEEEEEc-----------------ccCceeeechhhhccccccccccC
Confidence 99998 87765 3347888887 4442 2221 33455788999999
Q ss_pred CCCEEEEEeccC
Q 003363 382 DGKFLVFLSAKS 393 (826)
Q Consensus 382 DG~~l~f~s~~~ 393 (826)
|..+++-.+.+.
T Consensus 201 d~T~FiT~s~Dt 212 (327)
T KOG0643|consen 201 DRTYFITGSKDT 212 (327)
T ss_pred CcceEEecccCc
Confidence 999887666553
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00073 Score=68.60 Aligned_cols=190 Identities=14% Similarity=0.118 Sum_probs=108.0
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
..+.++|-....+..|+ ....-.+..++|-|-+..+ |+... + .|+ =||..|... +.....
T Consensus 120 dvVriy~ksst~pt~Lk-s~sQrnvtclawRPlsase---lavgC-r-----~gI--------ciW~~s~tl--n~~r~~ 179 (445)
T KOG2139|consen 120 DVVRIYDKSSTCPTKLK-SVSQRNVTCLAWRPLSASE---LAVGC-R-----AGI--------CIWSDSRTL--NANRNI 179 (445)
T ss_pred cEEEEeccCCCCCceec-chhhcceeEEEeccCCcce---eeeee-c-----cee--------EEEEcCccc--cccccc
Confidence 34556666566666664 3334467789999988762 54443 1 111 133333210 000000
Q ss_pred hhhcCCCCCCcceecCCC--CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcc-cceeeeeee
Q 003363 353 ELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL-EKIVDVIPV 429 (826)
Q Consensus 353 ~~~~~~~~~~~~~~Lt~~--~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~ 429 (826)
. ..+...-++..+ ...+.+.+|.+||..|+-.+-. ..+|.+||.+++....+. .+.
T Consensus 180 ~-----~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~g----------sssi~iWdpdtg~~~pL~~~gl------ 238 (445)
T KOG2139|consen 180 R-----MMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFG----------SSSIMIWDPDTGQKIPLIPKGL------ 238 (445)
T ss_pred c-----cccccchhheeCCCCceeeEEEEcCCCCEEeecccC----------cceEEEEcCCCCCcccccccCC------
Confidence 0 001112222222 2347889999999998866644 367999999998775543 111
Q ss_pred eeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCC
Q 003363 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSP 509 (826)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~ 509 (826)
.+...+.|||||..| |.+..++...||..+-.--+.+. ....+.+....|+|+|..|+|+.+..
T Consensus 239 --------------gg~slLkwSPdgd~l-faAt~davfrlw~e~q~wt~erw-~lgsgrvqtacWspcGsfLLf~~sgs 302 (445)
T KOG2139|consen 239 --------------GGFSLLKWSPDGDVL-FAATCDAVFRLWQENQSWTKERW-ILGSGRVQTACWSPCGSFLLFACSGS 302 (445)
T ss_pred --------------CceeeEEEcCCCCEE-EEecccceeeeehhcccceecce-eccCCceeeeeecCCCCEEEEEEcCC
Confidence 134467899999866 55566677777744322112222 22333456678999999999998764
Q ss_pred CCCCeEEEEeecc
Q 003363 510 VDVPQVKYGYFVD 522 (826)
Q Consensus 510 ~~p~~l~~~~~~~ 522 (826)
.. ||......
T Consensus 303 p~---lysl~f~~ 312 (445)
T KOG2139|consen 303 PR---LYSLTFDG 312 (445)
T ss_pred ce---EEEEeecC
Confidence 43 77665543
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00057 Score=67.81 Aligned_cols=279 Identities=13% Similarity=0.084 Sum_probs=143.7
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe---cCCceeEEEecCC-Ccccc---ccC-CCcccceeecCCCCeEEEEe
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFHVPQ-TVHGS---VYA-DGWFEGISWNSDETLIAYVA 226 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~---~~~~~~~~~~~~~-~~~g~---v~~-~~~~~~~~wSPDg~~ia~~~ 226 (826)
.....+|||||..+|..+... +-.++.+. .....+....... ..|-- .|. -+.+..+.|.|-+..|+..+
T Consensus 114 ~cR~aafs~DG~lvATGsaD~--SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~s 191 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATGSADA--SIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGS 191 (430)
T ss_pred ceeeeeeCCCCcEEEccCCcc--eEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEecc
Confidence 367889999999988754321 11222222 0111111111000 00000 111 12347899999999888888
Q ss_pred ecCCCCCCCccCCCCCC-CCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCC---CCccceEEE
Q 003363 227 EEPSPSKPTFSLGSTKG-GSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVW 302 (826)
Q Consensus 227 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~---~~~~~~~~w 302 (826)
.+.+.+.-.|.....+. -+...+. .-.....|.|.+.-.+++...+.+.++|+++-+.-.-. .|. ...+.++.+
T Consensus 192 rD~tvKlFDfsK~saKrA~K~~qd~-~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa-nPd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 192 RDNTVKLFDFSKTSAKRAFKVFQDT-EPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA-NPDDQHTGAITQVRY 269 (430)
T ss_pred CCCeEEEEecccHHHHHHHHHhhcc-ceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec-CcccccccceeEEEe
Confidence 87765432222111010 0111111 11223446666444566777889999999886644321 232 235778999
Q ss_pred eeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCccee-cC--CCCccccCcee
Q 003363 303 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN-LT--ESISSAFFPRF 379 (826)
Q Consensus 303 SPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-Lt--~~~~~~~~p~~ 379 (826)
|+.|+ |+.++. .++.|.++|= .++.+.+ +. .+...+.+..|
T Consensus 270 s~t~~-----lYvTaS--------------kDG~IklwDG-----------------VS~rCv~t~~~AH~gsevcSa~F 313 (430)
T KOG0640|consen 270 SSTGS-----LYVTAS--------------KDGAIKLWDG-----------------VSNRCVRTIGNAHGGSEVCSAVF 313 (430)
T ss_pred cCCcc-----EEEEec--------------cCCcEEeecc-----------------ccHHHHHHHHhhcCCceeeeEEE
Confidence 99999 666652 3346777873 3343322 21 12335788999
Q ss_pred cCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEE
Q 003363 380 SPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 459 (826)
Q Consensus 380 SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~ 459 (826)
+.+||+|+-...+ ..+++|.+.++.......+... . +...+ .....|.....+++
T Consensus 314 tkn~kyiLsSG~D-----------S~vkLWEi~t~R~l~~YtGAg~-t------grq~~-------rtqAvFNhtEdyVl 368 (430)
T KOG0640|consen 314 TKNGKYILSSGKD-----------STVKLWEISTGRMLKEYTGAGT-T------GRQKH-------RTQAVFNHTEDYVL 368 (430)
T ss_pred ccCCeEEeecCCc-----------ceeeeeeecCCceEEEEecCCc-c------cchhh-------hhhhhhcCccceEE
Confidence 9999998644433 3466777777655322211100 0 00000 11334444444554
Q ss_pred EEEEeCCeEEEEEEECCCCcEEEecCCCC--CeeeEEEeecCC
Q 003363 460 LSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGD 500 (826)
Q Consensus 460 ~~~~~~~~~~l~~vdl~tg~~~~lt~~~~--~~~~~~~s~dg~ 500 (826)
|- .+....+..||..++....+..... ...+..-||.+-
T Consensus 369 ~p--DEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p 409 (430)
T KOG0640|consen 369 FP--DEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP 409 (430)
T ss_pred cc--ccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC
Confidence 43 2345567888887777666544322 334444455443
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0029 Score=64.89 Aligned_cols=108 Identities=13% Similarity=0.036 Sum_probs=60.8
Q ss_pred eEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCC
Q 003363 98 AWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENE 177 (826)
Q Consensus 98 ~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~ 177 (826)
....+..|+||+.++|.... .....|+.... ++....+. .. .....|+|+|+|...++.. .. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~------~~~~~L~~~~~---~~~~~~~~-~g-----~~l~~PS~d~~g~~W~v~~-~~-~ 87 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEG------DGGRSLYVGPA---GGPVRPVL-TG-----GSLTRPSWDPDGWVWTVDD-GS-G 87 (253)
T ss_pred cccceEECCCCCeEEEEEEc------CCCCEEEEEcC---CCcceeec-cC-----CccccccccCCCCEEEEEc-CC-C
Confidence 35577789999999998611 23556776542 22222222 11 3578899999976554443 22 2
Q ss_pred CCeEEEEecCCcee-EEEecCCCccccccCCCcccceeecCCCCeEEEEeecC
Q 003363 178 SPIQFELWSQSQLE-KEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (826)
Q Consensus 178 ~~~~~~i~~~~~~~-~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~ 229 (826)
...++.-...+... ...+... ..+.| ..+++||||++||++.+..
T Consensus 88 ~~~~~~~~~~g~~~~~~v~~~~-~~~~I------~~l~vSpDG~RvA~v~~~~ 133 (253)
T PF10647_consen 88 GVRVVRDSASGTGEPVEVDWPG-LRGRI------TALRVSPDGTRVAVVVEDG 133 (253)
T ss_pred ceEEEEecCCCcceeEEecccc-cCCce------EEEEECCCCcEEEEEEecC
Confidence 11122111223222 2222221 11123 7999999999999998765
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00041 Score=71.51 Aligned_cols=269 Identities=12% Similarity=0.106 Sum_probs=143.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
+.+..+.|-++...|+.. +...++.+| ..++...+...-.+.-|.| ..+.+-+|++++.-.+.+....
T Consensus 176 gev~~v~~l~~sdtlatg-----g~Dr~Ik~W~v~~~k~~~~~tLaGs~g~i------t~~d~d~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 176 GEVHDVEFLRNSDTLATG-----GSDRIIKLWNVLGEKSELISTLAGSLGNI------TSIDFDSDNKHVIAASNDKNLR 244 (459)
T ss_pred cccceeEEccCcchhhhc-----chhhhhhhhhcccchhhhhhhhhccCCCc------ceeeecCCCceEEeecCCCcee
Confidence 346677888777777652 445577888 2222211111112222333 7889999999988877776544
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (826)
. |+............|..-.....|...--....+..+..|..||+..+....-. .+. ..+.+++-+ ..
T Consensus 245 ~--Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~-l~~-S~cnDI~~~---~~---- 313 (459)
T KOG0288|consen 245 L--WNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV-LPG-SQCNDIVCS---IS---- 313 (459)
T ss_pred e--eeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccc-ccc-ccccceEec---ce----
Confidence 3 332222222222222222211111111011223345567788888665432210 121 133344443 12
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
.++.+ ..+..|..+|. .++..+.--+..+.+.+...|+||..|.-.+.+
T Consensus 314 ~~~Sg--------------H~DkkvRfwD~-----------------Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRD 362 (459)
T KOG0288|consen 314 DVISG--------------HFDKKVRFWDI-----------------RSADKTRSVPLGGRVTSLDLSMDGLELLSSSRD 362 (459)
T ss_pred eeeec--------------ccccceEEEec-----------------cCCceeeEeecCcceeeEeeccCCeEEeeecCC
Confidence 33333 12235788886 455554444455678899999999998755433
Q ss_pred CCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCccccc-CCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003363 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS-SSILSNPWLSDGCTMLLSSIWGSSQVII 471 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~-~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (826)
..|-++|+.+.+.+...... .| .+ .......|||||.+++.. +.+..+|
T Consensus 363 -----------dtl~viDlRt~eI~~~~sA~-------------g~---k~asDwtrvvfSpd~~YvaAG---S~dgsv~ 412 (459)
T KOG0288|consen 363 -----------DTLKVIDLRTKEIRQTFSAE-------------GF---KCASDWTRVVFSPDGSYVAAG---SADGSVY 412 (459)
T ss_pred -----------CceeeeecccccEEEEeecc-------------cc---ccccccceeEECCCCceeeec---cCCCcEE
Confidence 34778888775543211110 01 11 124578899999976544 3455678
Q ss_pred EEECCCCcEEEecCCCC---CeeeEEEeecCCEEEEE
Q 003363 472 SVNVSSGELLRITPAES---NFSWSLLTLDGDNIIAV 505 (826)
Q Consensus 472 ~vdl~tg~~~~lt~~~~---~~~~~~~s~dg~~l~~~ 505 (826)
.+++.+|+++.+....+ .+....|++.|..++..
T Consensus 413 iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 413 IWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSA 449 (459)
T ss_pred EEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence 88888999887755444 23445666666655433
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0037 Score=66.56 Aligned_cols=170 Identities=13% Similarity=0.206 Sum_probs=99.8
Q ss_pred cccEEEEeCCCC--CeEEEEecCCCCCCeEEEEe-cC-CceeEEEec--CCCccccccCCCcccceeecCCCCeEEEEee
Q 003363 154 TGASAVVPSPSG--SKLLVVRNPENESPIQFELW-SQ-SQLEKEFHV--PQTVHGSVYADGWFEGISWNSDETLIAYVAE 227 (826)
Q Consensus 154 ~~~~~~~~SPdG--~~la~~~~~~~~~~~~~~i~-~~-~~~~~~~~~--~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~ 227 (826)
.++...+|||-| ..|||..-..++.+....++ .. +.....-.+ ..+ -.+.|.+.|+.|.+...
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~-----------~qLkW~~~g~~ll~l~~ 242 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSG-----------VQLKWQVLGKYLLVLVM 242 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecc-----------cEEEEecCCceEEEEEE
Confidence 468889999974 45677654444555455555 21 221111111 122 27889999999999877
Q ss_pred cCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCC
Q 003363 228 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 307 (826)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~ 307 (826)
...... +++. +..+||++++....++.. ......+.+++|.|+++
T Consensus 243 t~~ksn-----------------Ksyf----------------gesnLyl~~~~e~~i~V~--~~~~~pVhdf~W~p~S~ 287 (561)
T COG5354 243 THTKSN-----------------KSYF----------------GESNLYLLRITERSIPVE--KDLKDPVHDFTWEPLSS 287 (561)
T ss_pred Eeeecc-----------------ccee----------------ccceEEEEeeccccccee--ccccccceeeeecccCC
Confidence 653110 0000 237899999986555544 22234677999999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEE
Q 003363 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 387 (826)
Q Consensus 308 ~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~ 387 (826)
+ .+..+-- .+..+-..|+ .+.....+.+ ..-..+.|||.+++++
T Consensus 288 ~----F~vi~g~-------------~pa~~s~~~l-----------------r~Nl~~~~Pe--~~rNT~~fsp~~r~il 331 (561)
T COG5354 288 R----FAVISGY-------------MPASVSVFDL-----------------RGNLRFYFPE--QKRNTIFFSPHERYIL 331 (561)
T ss_pred c----eeEEecc-------------cccceeeccc-----------------ccceEEecCC--cccccccccCcccEEE
Confidence 9 6655411 2224555555 3332222222 2234578999999999
Q ss_pred EEeccCCCCCCCCcccceEEEEeCCC
Q 003363 388 FLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 388 f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
+..-.. -+.++-++|..+
T Consensus 332 ~agF~n--------l~gni~i~~~~~ 349 (561)
T COG5354 332 FAGFDN--------LQGNIEIFDPAG 349 (561)
T ss_pred EecCCc--------cccceEEeccCC
Confidence 876543 235677787554
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.011 Score=64.65 Aligned_cols=186 Identities=12% Similarity=0.077 Sum_probs=115.1
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
..+.++|.++.++..- ..-......++++||++. ++... .. ++...+..+|.
T Consensus 96 ~~v~vid~~~~~~~~~--~~vG~~P~~~~~~~~~~~----vYV~n-~~-----------~~~~~vsvid~---------- 147 (381)
T COG3391 96 NTVSVIDTATNTVLGS--IPVGLGPVGLAVDPDGKY----VYVAN-AG-----------NGNNTVSVIDA---------- 147 (381)
T ss_pred CeEEEEcCcccceeeE--eeeccCCceEEECCCCCE----EEEEe-cc-----------cCCceEEEEeC----------
Confidence 6788999766655443 233336778999999997 65554 11 13457888886
Q ss_pred hhhcCCCCCCcce-ecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeee
Q 003363 353 ELKESSSEDLPVV-NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 431 (826)
Q Consensus 353 ~~~~~~~~~~~~~-~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 431 (826)
.++... .+..+. .....+++|||++++-.... .+.|..+|..+....+ . .....+.+
T Consensus 148 -------~t~~~~~~~~vG~-~P~~~a~~p~g~~vyv~~~~----------~~~v~vi~~~~~~v~~-~-~~~~~~~~-- 205 (381)
T COG3391 148 -------ATNKVTATIPVGN-TPTGVAVDPDGNKVYVTNSD----------DNTVSVIDTSGNSVVR-G-SVGSLVGV-- 205 (381)
T ss_pred -------CCCeEEEEEecCC-CcceEEECCCCCeEEEEecC----------CCeEEEEeCCCcceec-c-cccccccc--
Confidence 444432 222222 23678999999987655522 3678899865543322 1 10001110
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC--CeeeEEEeecCCEEEEEEeCC
Q 003363 432 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGDNIIAVSSSP 509 (826)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~--~~~~~~~s~dg~~l~~~~s~~ 509 (826)
+ .......+++||+.+|+.........+..+|..++.+........ ......++|+|+.++.....
T Consensus 206 ------~-----~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~- 273 (381)
T COG3391 206 ------G-----TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ- 273 (381)
T ss_pred ------C-----CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC-
Confidence 0 123466789999988887655555789999999988887622222 12335788899887777655
Q ss_pred CCCCeEEEEeecc
Q 003363 510 VDVPQVKYGYFVD 522 (826)
Q Consensus 510 ~~p~~l~~~~~~~ 522 (826)
...+++++...
T Consensus 274 --~~~V~vid~~~ 284 (381)
T COG3391 274 --GGTVSVIDGAT 284 (381)
T ss_pred --CCeEEEEeCCC
Confidence 55577777654
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0033 Score=64.45 Aligned_cols=266 Identities=15% Similarity=0.119 Sum_probs=140.3
Q ss_pred hcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEe-CCCCCeEEEEecCCCCCCeEEEEe---cCCceeEEEec
Q 003363 121 LANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVP-SPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFHV 196 (826)
Q Consensus 121 ~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~-SPdG~~la~~~~~~~~~~~~~~i~---~~~~~~~~~~~ 196 (826)
..+.+.+.+.+++. .|....++.... +.+...+| .++-..-.|++... .|.+.+| .+......+..
T Consensus 119 ltgsYDg~~riWd~--~Gk~~~~~~Ght-----~~ik~v~~v~~n~~~~~fvsas~---Dqtl~Lw~~~~~~~~~~~~~~ 188 (423)
T KOG0313|consen 119 LTGSYDGTSRIWDL--KGKSIKTIVGHT-----GPIKSVAWVIKNSSSCLFVSASM---DQTLRLWKWNVGENKVKALKV 188 (423)
T ss_pred EEeecCCeeEEEec--CCceEEEEecCC-----cceeeeEEEecCCccceEEEecC---CceEEEEEecCchhhhhHHhH
Confidence 34456667777664 444445555443 33554555 44443334444332 3455666 23222333333
Q ss_pred CCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEE
Q 003363 197 PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLF 276 (826)
Q Consensus 197 ~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~ 276 (826)
..+....| ..++-.+||.+++..+-+.....+..... .....+ ....+++ ..-
T Consensus 189 ~~GHk~~V------~sVsv~~sgtr~~SgS~D~~lkiWs~~~~--~~~~~E------------------~~s~~rr-k~~ 241 (423)
T KOG0313|consen 189 CRGHKRSV------DSVSVDSSGTRFCSGSWDTMLKIWSVETD--EEDELE------------------SSSNRRR-KKQ 241 (423)
T ss_pred hcccccce------eEEEecCCCCeEEeecccceeeecccCCC--cccccc------------------ccchhhh-hhh
Confidence 34555555 89999999999988876664432221110 000000 0000000 000
Q ss_pred EEEccCCceEeccCC-CCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhh
Q 003363 277 VININSGEVQAVKGI-PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELK 355 (826)
Q Consensus 277 v~d~~~g~~~~l~~~-~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 355 (826)
..+-.++.-.++... .....+.++.|++ ... ++-++|+. .|..+|+.
T Consensus 242 ~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v----~yS~SwDH---------------TIk~WDle------------ 289 (423)
T KOG0313|consen 242 KREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATV----IYSVSWDH---------------TIKVWDLE------------ 289 (423)
T ss_pred hhhhcccccCceEEecccccceeeEEEcC-CCc----eEeecccc---------------eEEEEEee------------
Confidence 011112221111101 2234677899998 332 55555432 68889982
Q ss_pred cCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCC
Q 003363 356 ESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEG 435 (826)
Q Consensus 356 ~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (826)
.++....++.. ........+|+.+.|+-.+.+ .+|.++|..++........
T Consensus 290 ----tg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssd-----------r~irl~DPR~~~gs~v~~s------------- 340 (423)
T KOG0313|consen 290 ----TGGLKSTLTTN-KSLNCISYSPLSKLLASGSSD-----------RHIRLWDPRTGDGSVVSQS------------- 340 (423)
T ss_pred ----cccceeeeecC-cceeEeecccccceeeecCCC-----------CceeecCCCCCCCceeEEe-------------
Confidence 33344455543 346678889988888766654 4688999877644211111
Q ss_pred CCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC
Q 003363 436 DCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE 487 (826)
Q Consensus 436 ~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~ 487 (826)
|-| +...+..+.|+|-..+++++.+.++...+|-+.-..+-+.-|....
T Consensus 341 --~~g-H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~ 389 (423)
T KOG0313|consen 341 --LIG-HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHN 389 (423)
T ss_pred --eec-chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCC
Confidence 111 1224567889999999988888888888886655444555555443
|
|
| >PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0014 Score=69.01 Aligned_cols=207 Identities=13% Similarity=0.126 Sum_probs=120.8
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cchHHHHHHHHCCcEEEEECCCCCCCC-chhh-----------
Q 003363 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVGYSLLIVNYRGSLGF-GEEA----------- 639 (826)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~~~~~~~la~~G~~Vl~~d~rG~~g~-G~~~----------- 639 (826)
+.++- .+|.|.. .++...+||++||-+...... ........|.++|+.++.+..+.-... -...
T Consensus 71 ~~~fl-aL~~~~~--~~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~~~~~~~~~a~ 147 (310)
T PF12048_consen 71 EERFL-ALWRPAN--SAKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRATEAEEVPSAG 147 (310)
T ss_pred CEEEE-EEEeccc--CCCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccCCCCCCCCCCC
Confidence 34444 4666653 567788999999966554433 344567788999999999887651100 0000
Q ss_pred hhcCCC-----------------CCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC-ceeEEEe
Q 003363 640 LQSLPG-----------------KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAA 701 (826)
Q Consensus 640 ~~~~~~-----------------~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~-~~~a~v~ 701 (826)
...... ........-+.+++.++.+++ ..+|+|+||..|+++++.++...+. .+.+.|+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~---~~~ivlIg~G~gA~~~~~~la~~~~~~~daLV~ 224 (310)
T PF12048_consen 148 DQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQG---GKNIVLIGHGTGAGWAARYLAEKPPPMPDALVL 224 (310)
T ss_pred CCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcC---CceEEEEEeChhHHHHHHHHhcCCCcccCeEEE
Confidence 000000 000111234556666666665 2459999999999999999987764 4788888
Q ss_pred cCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHH
Q 003363 702 RNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQY 781 (826)
Q Consensus 702 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~ 781 (826)
+++..... .. .......+.+++.|+|=|++.. .......+.+=
T Consensus 225 I~a~~p~~-------------------------------~~-----n~~l~~~la~l~iPvLDi~~~~-~~~~~~~a~~R 267 (310)
T PF12048_consen 225 INAYWPQP-------------------------------DR-----NPALAEQLAQLKIPVLDIYSAD-NPASQQTAKQR 267 (310)
T ss_pred EeCCCCcc-------------------------------hh-----hhhHHHHhhccCCCEEEEecCC-ChHHHHHHHHH
Confidence 87743110 00 0011234567889999999887 33222222222
Q ss_pred HHHHHhC-CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 782 ARALREK-GVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 782 ~~~l~~~-g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
....++. ....+-+.+++..|.....+ ....++|..|++++
T Consensus 268 ~~~a~r~~~~~YrQ~~L~~~~~~~~~~~--~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 268 KQAAKRNKKPDYRQIQLPGLPDNPSGWQ--EQLLRRIRGWLKRH 309 (310)
T ss_pred HHHHHhccCCCceeEecCCCCCChhhHH--HHHHHHHHHHHHhh
Confidence 2222222 23566666777666443222 23788999999876
|
This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes. |
| >PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00028 Score=70.83 Aligned_cols=102 Identities=18% Similarity=0.305 Sum_probs=60.0
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHH--------HHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHH
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFL--------SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 664 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~l--------a~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 664 (826)
..|||+||..++ ...+......+ ....+.++.+||..... . ..+..-....+-+..+++.+.+
T Consensus 5 ~pVlFIhG~~Gs--~~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s---~----~~g~~l~~q~~~~~~~i~~i~~ 75 (225)
T PF07819_consen 5 IPVLFIHGNAGS--YKQVRSLASELQRKALLNDNSSHFDFFTVDFNEELS---A----FHGRTLQRQAEFLAEAIKYILE 75 (225)
T ss_pred CEEEEECcCCCC--HhHHHHHHHHHhhhhhhccCccceeEEEeccCcccc---c----cccccHHHHHHHHHHHHHHHHH
Confidence 569999995443 22333333222 12357899999876321 0 0111111123445556666655
Q ss_pred cC---CCCCCcEEEEEecchHHHHHHHHHhCC---CceeEEEecC
Q 003363 665 MG---LANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARN 703 (826)
Q Consensus 665 ~~---~~d~~rv~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~ 703 (826)
.. ...+++|.|+||||||.++-.++...+ +.++.+|..+
T Consensus 76 ~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~ 120 (225)
T PF07819_consen 76 LYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLG 120 (225)
T ss_pred hhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEc
Confidence 42 356789999999999999888776543 3577766554
|
This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane |
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0029 Score=73.16 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=60.1
Q ss_pred CeEEEEecCCCCCCeEEEEe-cCCceeEE-EecCCCccccccCCCcccceeecCCCCeEEE-EeecCCCCCCCccCCCCC
Q 003363 166 SKLLVVRNPENESPIQFELW-SQSQLEKE-FHVPQTVHGSVYADGWFEGISWNSDETLIAY-VAEEPSPSKPTFSLGSTK 242 (826)
Q Consensus 166 ~~la~~~~~~~~~~~~~~i~-~~~~~~~~-~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~-~~~~~~~~~~~~~~~~~~ 242 (826)
.+|||+.+.. + .+..++ ++...+.+ +.....+ ..|.|||||++||| ++-+...
T Consensus 319 tkiAfv~~~~-~--~L~~~D~dG~n~~~ve~~~~~~i----------~sP~~SPDG~~vAY~ts~e~~~----------- 374 (912)
T TIGR02171 319 AKLAFRNDVT-G--NLAYIDYTKGASRAVEIEDTISV----------YHPDISPDGKKVAFCTGIEGLP----------- 374 (912)
T ss_pred eeEEEEEcCC-C--eEEEEecCCCCceEEEecCCCce----------ecCcCCCCCCEEEEEEeecCCC-----------
Confidence 4788987632 2 577777 55555555 5544444 78999999999999 6544311
Q ss_pred CCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc--eEeccCCCCCCccceEEEeeCCCCCccEEEEEeec
Q 003363 243 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 319 (826)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~--~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~ 319 (826)
+.+.||+-|+.+.. +..|. .. ...+-.....++|... |||++.-
T Consensus 375 ----------------------------g~s~vYv~~L~t~~~~~vkl~-ve-~aaiprwrv~e~gdt~---ivyv~~a 420 (912)
T TIGR02171 375 ----------------------------GKSSVYVRNLNASGSGLVKLP-VE-NAAIPRWRVLENGDTV---IVYVSDA 420 (912)
T ss_pred ----------------------------CCceEEEEehhccCCCceEee-cc-cccccceEecCCCCeE---EEEEcCC
Confidence 34779999987543 23331 11 2223334456777775 8888753
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0028 Score=65.13 Aligned_cols=137 Identities=17% Similarity=0.212 Sum_probs=77.5
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEe-eCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWA-PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wS-PDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
...|+.++.++++.+.+. .+. ...+++. +||+ |++... ..+.++|.
T Consensus 21 ~~~i~~~~~~~~~~~~~~-~~~---~~G~~~~~~~g~-----l~v~~~----------------~~~~~~d~-------- 67 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEVID-LPG---PNGMAFDRPDGR-----LYVADS----------------GGIAVVDP-------- 67 (246)
T ss_dssp TTEEEEEETTTTEEEEEE-SSS---EEEEEEECTTSE-----EEEEET----------------TCEEEEET--------
T ss_pred CCEEEEEECCCCeEEEEe-cCC---CceEEEEccCCE-----EEEEEc----------------CceEEEec--------
Confidence 368999999999887652 222 4455666 6644 555431 14555576
Q ss_pred hhhhhcCCCCCCcceecCCC------CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCccccee
Q 003363 351 ELELKESSSEDLPVVNLTES------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 424 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~------~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 424 (826)
.+++.+.+... ........+.|||+ |+|.......... .....||+++.. ++...+...
T Consensus 68 ---------~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~--~~~g~v~~~~~~-~~~~~~~~~-- 132 (246)
T PF08450_consen 68 ---------DTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASG--IDPGSVYRIDPD-GKVTVVADG-- 132 (246)
T ss_dssp ---------TTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTC--GGSEEEEEEETT-SEEEEEEEE--
T ss_pred ---------CCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCcccc--ccccceEEECCC-CeEEEEecC--
Confidence 66665544332 23356788999999 6666654321110 111579999876 332111110
Q ss_pred eeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECC
Q 003363 425 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 476 (826)
Q Consensus 425 ~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~ 476 (826)
+ . ....++|+|||+.||++....+ .|++++++
T Consensus 133 -----~------~-------~pNGi~~s~dg~~lyv~ds~~~--~i~~~~~~ 164 (246)
T PF08450_consen 133 -----L------G-------FPNGIAFSPDGKTLYVADSFNG--RIWRFDLD 164 (246)
T ss_dssp -----E------S-------SEEEEEEETTSSEEEEEETTTT--EEEEEEEE
T ss_pred -----c------c-------cccceEECCcchheeecccccc--eeEEEecc
Confidence 0 0 1246789999999988654344 46666654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0051 Score=67.66 Aligned_cols=157 Identities=15% Similarity=0.156 Sum_probs=100.7
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec---CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS---QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~ 230 (826)
+.+...++|-+.+.||..+..+ .+++|. +--...+++. +..+.| +++.|++.| +|..+.
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g-----~IEiwN~~~~w~~~~vi~g--~~drsI------E~L~W~e~~-RLFS~g---- 87 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDG-----NIEIWNLSNNWFLEPVIHG--PEDRSI------ESLAWAEGG-RLFSSG---- 87 (691)
T ss_pred cceEEEEEeccCCceeeeccCC-----cEEEEccCCCceeeEEEec--CCCCce------eeEEEccCC-eEEeec----
Confidence 5688999999999999887665 678883 2233444443 343344 899999444 465431
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003363 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
....|.-||+.+++.+... -.....+.+++-+|.++.
T Consensus 88 ----------------------------------------~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p~~~~-- 124 (691)
T KOG2048|consen 88 ----------------------------------------LSGSITEWDLHTLKQKYNI-DSNGGAIWSIAINPENTI-- 124 (691)
T ss_pred ----------------------------------------CCceEEEEecccCceeEEe-cCCCcceeEEEeCCccce--
Confidence 3367888999888766441 223345667788888876
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc---eecCCCCccccCceecCCCCEEE
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLTESISSAFFPRFSPDGKFLV 387 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~Lt~~~~~~~~p~~SpDG~~l~ 387 (826)
+...+ .+. .|+.++. ..+.+ +.|--..+.+.+..|+|+|.+|+
T Consensus 125 --l~Igc-------------ddG--vl~~~s~-----------------~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~ 170 (691)
T KOG2048|consen 125 --LAIGC-------------DDG--VLYDFSI-----------------GPDKITYKRSLMRQKSRVLSLSWNPTGTKIA 170 (691)
T ss_pred --EEeec-------------CCc--eEEEEec-----------------CCceEEEEeecccccceEEEEEecCCccEEE
Confidence 65554 222 5666655 33332 22222346688999999999998
Q ss_pred EEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 388 f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
-.+.+ ..|.+||..++..
T Consensus 171 ~Gs~D-----------g~Iriwd~~~~~t 188 (691)
T KOG2048|consen 171 GGSID-----------GVIRIWDVKSGQT 188 (691)
T ss_pred ecccC-----------ceEEEEEcCCCce
Confidence 65544 3577888776554
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.016 Score=61.66 Aligned_cols=93 Identities=25% Similarity=0.292 Sum_probs=52.9
Q ss_pred CCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCc
Q 003363 360 EDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFP 439 (826)
Q Consensus 360 ~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 439 (826)
++....++...+....-.+|||||.+||..+.+ +.||++..+.++.+ ...+-.+..
T Consensus 436 e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d-----------~~iyiy~Vs~~g~~--------y~r~~k~~g----- 491 (626)
T KOG2106|consen 436 ETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHD-----------NHIYIYRVSANGRK--------YSRVGKCSG----- 491 (626)
T ss_pred ccceeEEEEecCCceEEEEEcCCCCEEEEecCC-----------CeEEEEEECCCCcE--------EEEeeeecC-----
Confidence 454444444445567778999999999988865 34555554443332 111111100
Q ss_pred ccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecC
Q 003363 440 GLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 485 (826)
Q Consensus 440 g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~ 485 (826)
.-+..+.||+|++.|. ...++.+|..+. -++...++.
T Consensus 492 ----s~ithLDwS~Ds~~~~---~~S~d~eiLyW~--~~~~~~~ts 528 (626)
T KOG2106|consen 492 ----SPITHLDWSSDSQFLV---SNSGDYEILYWK--PSECKQITS 528 (626)
T ss_pred ----ceeEEeeecCCCceEE---eccCceEEEEEc--cccCcccce
Confidence 1234678999998553 345677777663 344444444
|
|
| >PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3 | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00054 Score=69.41 Aligned_cols=231 Identities=14% Similarity=0.199 Sum_probs=117.5
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch-----HHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCc
Q 003363 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-----KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (826)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~-----~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~ 649 (826)
.++..++-. ..+++|+||-.|--+-.. ...|. ..++.+ .+.|.++-+|.+|...-... ++..+..
T Consensus 10 ~v~V~v~G~----~~~~kp~ilT~HDvGlNh-~scF~~ff~~~~m~~i-~~~f~i~Hi~aPGqe~ga~~----~p~~y~y 79 (283)
T PF03096_consen 10 SVHVTVQGD----PKGNKPAILTYHDVGLNH-KSCFQGFFNFEDMQEI-LQNFCIYHIDAPGQEEGAAT----LPEGYQY 79 (283)
T ss_dssp EEEEEEESS------TTS-EEEEE--TT--H-HHHCHHHHCSHHHHHH-HTTSEEEEEE-TTTSTT---------TT---
T ss_pred EEEEEEEec----CCCCCceEEEeccccccc-hHHHHHHhcchhHHHH-hhceEEEEEeCCCCCCCccc----ccccccc
Confidence 455555532 234789999999743221 11122 233444 45699999999997653222 3444334
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhc---------------cC
Q 003363 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV---------------GT 714 (826)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~---------------~~ 714 (826)
..++++.+.+..++++-.+ +.|.-+|--+|+++-+.+|..+|+++.++|+++|........ +.
T Consensus 80 Psmd~LAe~l~~Vl~~f~l--k~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw~Ew~~~K~~~~~L~~~gm 157 (283)
T PF03096_consen 80 PSMDQLAEMLPEVLDHFGL--KSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGWMEWFYQKLSSWLLYSYGM 157 (283)
T ss_dssp --HHHHHCTHHHHHHHHT-----EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHHHHH-------CT
T ss_pred cCHHHHHHHHHHHHHhCCc--cEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccHHHHHHHHHhccccccccc
Confidence 4577777777777776433 679999999999999999999999999999999865421110 00
Q ss_pred CC-CCCchhhhhccCcC-----------CccCCCCCChhhHHHHh----hc-CcccccCCCCCcEEEEEeCCCCCCCcHH
Q 003363 715 TD-IPDWCYVESYGSKG-----------KDSFTESPSVEDLTRFH----SK-SPISHISKVKTPTIFLLGAQDLRVPVSN 777 (826)
Q Consensus 715 ~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~----~~-sp~~~~~~i~~PvLii~G~~D~~vp~~~ 777 (826)
+. ..+......++... ...+.......+...|. .. +.........||+|++.|+.-+.+ +.
T Consensus 158 t~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c~vLlvvG~~Sp~~--~~ 235 (283)
T PF03096_consen 158 TSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGCPVLLVVGDNSPHV--DD 235 (283)
T ss_dssp TS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS-EEEEEETTSTTH--HH
T ss_pred ccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCCCeEEEEecCCcch--hh
Confidence 00 00000001111100 00111111112222211 11 112234556799999999998876 88
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 778 GLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 778 ~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
+.++..+|.. ....++.++++|=....++ .....+.+.-|+.
T Consensus 236 vv~~ns~Ldp--~~ttllkv~dcGglV~eEq-P~klaea~~lFlQ 277 (283)
T PF03096_consen 236 VVEMNSKLDP--TKTTLLKVADCGGLVLEEQ-PGKLAEAFKLFLQ 277 (283)
T ss_dssp HHHHHHHS-C--CCEEEEEETT-TT-HHHH--HHHHHHHHHHHHH
T ss_pred HHHHHhhcCc--ccceEEEecccCCcccccC-cHHHHHHHHHHHc
Confidence 8889888865 4688999998865443222 2244455544543
|
Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A. |
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.024 Score=53.92 Aligned_cols=130 Identities=15% Similarity=0.188 Sum_probs=68.3
Q ss_pred CCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccC-ceecCCCCEEEEEeccCCCCCCCCcccceEEEEe
Q 003363 333 RPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFF-PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 410 (826)
Q Consensus 333 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~-p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d 410 (826)
.+|.||.-|. ..|+ ...+..+.+.+.. -.| .|-.++-.+ +...|..||
T Consensus 161 gdc~iy~tdc-----------------~~g~~~~a~sghtghilalysw--n~~m~~sgs-----------qdktirfwd 210 (350)
T KOG0641|consen 161 GDCKIYITDC-----------------GRGQGFHALSGHTGHILALYSW--NGAMFASGS-----------QDKTIRFWD 210 (350)
T ss_pred CcceEEEeec-----------------CCCCcceeecCCcccEEEEEEe--cCcEEEccC-----------CCceEEEEe
Confidence 5679999998 4443 5666666665432 234 344333222 224577788
Q ss_pred CCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE-EecCCCCC
Q 003363 411 WPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RITPAESN 489 (826)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~-~lt~~~~~ 489 (826)
+.-....+ ++. .+..-.|+-.+.+..++..|.|+ |+.+...++ ....+|+.+|+.. +.-+...+
T Consensus 211 lrv~~~v~----------~l~--~~~~~~glessavaav~vdpsgr-ll~sg~~ds--sc~lydirg~r~iq~f~phsad 275 (350)
T KOG0641|consen 211 LRVNSCVN----------TLD--NDFHDGGLESSAVAAVAVDPSGR-LLASGHADS--SCMLYDIRGGRMIQRFHPHSAD 275 (350)
T ss_pred eeccceee----------ecc--CcccCCCcccceeEEEEECCCcc-eeeeccCCC--ceEEEEeeCCceeeeeCCCccc
Confidence 75432211 110 01111122223345667788997 444443333 3444566677654 44455556
Q ss_pred eeeEEEeecCCEEEEEEe
Q 003363 490 FSWSLLTLDGDNIIAVSS 507 (826)
Q Consensus 490 ~~~~~~s~dg~~l~~~~s 507 (826)
+....|+|...+++..+.
T Consensus 276 ir~vrfsp~a~yllt~sy 293 (350)
T KOG0641|consen 276 IRCVRFSPGAHYLLTCSY 293 (350)
T ss_pred eeEEEeCCCceEEEEecc
Confidence 666788887666554443
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.017 Score=64.34 Aligned_cols=214 Identities=15% Similarity=0.158 Sum_probs=122.8
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (826)
..++.|||++.|||+-+.. +..+..|.+.|+.+|+...-.
T Consensus 132 g~~~~s~D~~~la~s~D~~---------------------------------------G~e~y~lr~kdL~tg~~~~d~- 171 (682)
T COG1770 132 GAASISPDHNLLAYSVDVL---------------------------------------GDEQYTLRFKDLATGEELPDE- 171 (682)
T ss_pred eeeeeCCCCceEEEEEecc---------------------------------------cccEEEEEEEecccccccchh-
Confidence 6889999999999975543 224578999999999764331
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC
Q 003363 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 370 (826)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 370 (826)
+ ....+.++|.+|++. ++|+..... .|+..||+..+.. ....-+.+.+.
T Consensus 172 i--~~~~~~~~Wa~d~~~----lfYt~~d~~----------~rp~kv~~h~~gt---------------~~~~d~lvyeE 220 (682)
T COG1770 172 I--TNTSGSFAWAADGKT----LFYTRLDEN----------HRPDKVWRHRLGT---------------PGSSDELVYEE 220 (682)
T ss_pred h--cccccceEEecCCCe----EEEEEEcCC----------CCcceEEEEecCC---------------CCCcceEEEEc
Confidence 1 113668999999999 999874332 2667899888721 11333444433
Q ss_pred Cc--cccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCC
Q 003363 371 IS--SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 448 (826)
Q Consensus 371 ~~--~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~ 448 (826)
.. ...+..=|...++|+...+. ..+.++++++.+..+.. ..-+.+ +.... .
T Consensus 221 ~d~~f~~~v~~s~s~~yi~i~~~~--------~~tsE~~ll~a~~p~~~-----p~vv~p-----r~~g~---------e 273 (682)
T COG1770 221 KDDRFFLSVGRSRSEAYIVISLGS--------HITSEVRLLDADDPEAE-----PKVVLP-----RENGV---------E 273 (682)
T ss_pred CCCcEEEEeeeccCCceEEEEcCC--------CcceeEEEEecCCCCCc-----eEEEEE-----cCCCc---------E
Confidence 22 22333345666777655533 24578899887653321 111111 11000 0
Q ss_pred CccccCCCEEEEEEEeCC-eEEEEEEEC--CCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 449 NPWLSDGCTMLLSSIWGS-SQVIISVNV--SSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 449 ~~ws~Dg~~l~~~~~~~~-~~~l~~vdl--~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
..-..-|..+++.++..+ +..|+...+ .....+.+.+...+.....++.-.+.|+.......- |++++.+..++
T Consensus 274 Y~~eh~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~gl-p~v~v~~~~~~ 350 (682)
T COG1770 274 YSVEHGGDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGL-PRVVVRDRKTG 350 (682)
T ss_pred EeeeecCcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCC-ceEEEEecCCC
Confidence 011123556777776666 556666544 222344444444444555666667777777666554 44776665433
|
|
| >PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics [] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00027 Score=71.72 Aligned_cols=98 Identities=13% Similarity=0.136 Sum_probs=64.6
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHH-HHHHHHcCCCCCC
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLANPS 671 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~d~~ 671 (826)
+.|+++|++.++ ...|..+++.|...++.|+.++++|... + ......++++.+. ++.+.+.. ...
T Consensus 1 ~~lf~~p~~gG~--~~~y~~la~~l~~~~~~v~~i~~~~~~~-~---------~~~~~si~~la~~y~~~I~~~~--~~g 66 (229)
T PF00975_consen 1 RPLFCFPPAGGS--ASSYRPLARALPDDVIGVYGIEYPGRGD-D---------EPPPDSIEELASRYAEAIRARQ--PEG 66 (229)
T ss_dssp -EEEEESSTTCS--GGGGHHHHHHHTTTEEEEEEECSTTSCT-T---------SHEESSHHHHHHHHHHHHHHHT--SSS
T ss_pred CeEEEEcCCccC--HHHHHHHHHhCCCCeEEEEEEecCCCCC-C---------CCCCCCHHHHHHHHHHHhhhhC--CCC
Confidence 358889987764 6688888888866568999999998431 0 1112235554433 34444432 224
Q ss_pred cEEEEEecchHHHHHHHHHhC---CCceeEEEecCC
Q 003363 672 KVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNP 704 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~---p~~~~a~v~~~p 704 (826)
++.|+|||+||.+|..+|.+. ...+..++++.+
T Consensus 67 p~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~ 102 (229)
T PF00975_consen 67 PYVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDS 102 (229)
T ss_dssp SEEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESC
T ss_pred CeeehccCccHHHHHHHHHHHHHhhhccCceEEecC
Confidence 899999999999999988643 334667776663
|
Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A .... |
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00049 Score=69.87 Aligned_cols=211 Identities=14% Similarity=0.068 Sum_probs=132.7
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc-eeE---EEecCCCccccccCCCcccceeecCCCCeEEEEeecC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ-LEK---EFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~-~~~---~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~ 229 (826)
..+...+++-.|++||..+..- . ..+|+-.+ .+. +......+ ..+.|-|-|.+|+..+.+.
T Consensus 151 ~sv~di~~~a~Gk~l~tcSsDl--~---~~LWd~~~~~~c~ks~~gh~h~v----------S~V~f~P~gd~ilS~srD~ 215 (406)
T KOG0295|consen 151 DSVFDISFDASGKYLATCSSDL--S---AKLWDFDTFFRCIKSLIGHEHGV----------SSVFFLPLGDHILSCSRDN 215 (406)
T ss_pred cceeEEEEecCccEEEecCCcc--c---hhheeHHHHHHHHHHhcCcccce----------eeEEEEecCCeeeeccccc
Confidence 4588899999999998775532 1 45663222 111 11111222 7899999999999988887
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCC
Q 003363 230 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 309 (826)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~ 309 (826)
+... |+...+-..+....+..|..-+.-..|+--..+......|.+|-+++++.+.+. ...+..+.-++|.|.....
T Consensus 216 tik~--We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~l-R~hEh~vEci~wap~~~~~ 292 (406)
T KOG0295|consen 216 TIKA--WECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAEL-REHEHPVECIAWAPESSYP 292 (406)
T ss_pred ceeE--EecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhh-hccccceEEEEecccccCc
Confidence 7654 443344455566677778876666667322334445678999999988655542 3344556677888865431
Q ss_pred ccEEEEEeecCcceeeeeee--eccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEE
Q 003363 310 HQYLVFVGWSSETRKLGIKY--CYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFL 386 (826)
Q Consensus 310 ~~~lvf~~~~~~~~~~g~~~--~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l 386 (826)
.|-+.+... .|..+ ...++..|..+|+ .++. .-.|..+...+...+|||-||+|
T Consensus 293 --~i~~at~~~----~~~~~l~s~SrDktIk~wdv-----------------~tg~cL~tL~ghdnwVr~~af~p~Gkyi 349 (406)
T KOG0295|consen 293 --SISEATGST----NGGQVLGSGSRDKTIKIWDV-----------------STGMCLFTLVGHDNWVRGVAFSPGGKYI 349 (406)
T ss_pred --chhhccCCC----CCccEEEeecccceEEEEec-----------------cCCeEEEEEecccceeeeeEEcCCCeEE
Confidence 011111100 01111 1235567888888 5554 45677777889999999999999
Q ss_pred EEEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 387 ~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
+-...+ ..|.+||+.++.-
T Consensus 350 ~ScaDD-----------ktlrvwdl~~~~c 368 (406)
T KOG0295|consen 350 LSCADD-----------KTLRVWDLKNLQC 368 (406)
T ss_pred EEEecC-----------CcEEEEEecccee
Confidence 766654 4589999887554
|
|
| >PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00022 Score=79.90 Aligned_cols=112 Identities=21% Similarity=0.204 Sum_probs=68.6
Q ss_pred CcEEEEEcCCCCCCCCc--cchHHHHHHHHCCcEEEEECCCCCCCCchhhh------hcCCCCCCcchHHHHHHHHHHHH
Q 003363 592 DPLIVVLHGGPHSVSLS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL------QSLPGKVGSQDVNDVLTAIDHVI 663 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~--~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~------~~~~~~~~~~~~~D~~~~i~~l~ 663 (826)
.|++|++-| -+..... ..........+.|-.++++..|- ||.+.. +.+..-...+.++|+...++++.
T Consensus 29 gpifl~~gg-E~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRy---YG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~ 104 (434)
T PF05577_consen 29 GPIFLYIGG-EGPIEPFWINNGFMWELAKEFGALVVALEHRY---YGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVK 104 (434)
T ss_dssp SEEEEEE---SS-HHHHHHH-HHHHHHHHHHTEEEEEE--TT---STTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCccchhhhcCChHHHHHHHcCCcEEEeehhh---hcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHH
Confidence 788888844 2221110 01122333456799999999998 665532 11222223456889999999988
Q ss_pred HcC-CCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccc
Q 003363 664 DMG-LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (826)
Q Consensus 664 ~~~-~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~ 707 (826)
++. ..+..++.++|.||||.+++++-.++|++|.++++.++++.
T Consensus 105 ~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 105 KKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp HHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CC
T ss_pred HhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceee
Confidence 653 34556999999999999999999999999999998877543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C. |
| >KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0024 Score=60.73 Aligned_cols=108 Identities=21% Similarity=0.289 Sum_probs=77.6
Q ss_pred CcEEEEEcCCCCCCCCc-cchHHHHHHHHCCcEEEEECCCCCC-CCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCC
Q 003363 592 DPLIVVLHGGPHSVSLS-SYSKSLAFLSSVGYSLLIVNYRGSL-GFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~-~~~~~~~~la~~G~~Vl~~d~rG~~-g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (826)
.-.|||+-|-+...-.. .......+|.+.+|..+.+..|.+. |||... -..+.+|+..+++++...++
T Consensus 36 ~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~s--------lk~D~edl~~l~~Hi~~~~f-- 105 (299)
T KOG4840|consen 36 SVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTFS--------LKDDVEDLKCLLEHIQLCGF-- 105 (299)
T ss_pred EEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeecccccccccccc--------ccccHHHHHHHHHHhhccCc--
Confidence 35677776533222222 2345667888999999999988753 355432 13468899999998876643
Q ss_pred CCcEEEEEecchHHHHHHHHHh--CCCceeEEEecCCccchh
Q 003363 670 PSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCNLA 709 (826)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~~~~~ 709 (826)
...|+|+|||-|..-.++++++ .+..++++|+.+|+.|..
T Consensus 106 St~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 106 STDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred ccceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhh
Confidence 3489999999999999888853 356789999999999876
|
|
| >PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00092 Score=68.33 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=57.7
Q ss_pred CCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 003363 757 KVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 757 ~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~ 821 (826)
...+|-|++.++.|..++.++.+++.+..++.|.+++...+++..|.-.......+++..+.+|+
T Consensus 176 ~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 176 PSRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 44589999999999999999999999999999999999999999998777777778888887763
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.011 Score=62.91 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=55.3
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhh
Q 003363 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (826)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (826)
....+|+|.++.....+. .......-+.|||||.. |+..+ .++.||++.++.
T Consensus 427 ~G~w~V~d~e~~~lv~~~--~d~~~ls~v~ysp~G~~----lAvgs---------------~d~~iyiy~Vs~------- 478 (626)
T KOG2106|consen 427 TGRWFVLDTETQDLVTIH--TDNEQLSVVRYSPDGAF----LAVGS---------------HDNHIYIYRVSA------- 478 (626)
T ss_pred cceEEEEecccceeEEEE--ecCCceEEEEEcCCCCE----EEEec---------------CCCeEEEEEECC-------
Confidence 467899999997777663 33556778899999998 88877 223555555421
Q ss_pred hhhhcCCCCCCcceecCCCC-ccccCceecCCCCEEEEEe
Q 003363 352 LELKESSSEDLPVVNLTESI-SSAFFPRFSPDGKFLVFLS 390 (826)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt~~~-~~~~~p~~SpDG~~l~f~s 390 (826)
.+....++-... ..+....||+|+++|.-.+
T Consensus 479 --------~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 479 --------NGRKYSRVGKCSGSPITHLDWSSDSQFLVSNS 510 (626)
T ss_pred --------CCcEEEEeeeecCceeEEeeecCCCceEEecc
Confidence 333343332222 4577889999999886544
|
|
| >COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0041 Score=60.78 Aligned_cols=210 Identities=18% Similarity=0.160 Sum_probs=113.1
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCC-----cEEEEECCCCCCCCchh----hhhc-------CCCCCCcchHHH
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG-----YSLLIVNYRGSLGFGEE----ALQS-------LPGKVGSQDVND 654 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G-----~~Vl~~d~rG~~g~G~~----~~~~-------~~~~~~~~~~~D 654 (826)
..| .||+||..+. ...+..++..|...+ -.++.+|--|+-..-.. .... .....+.....=
T Consensus 45 ~iP-TIfIhGsgG~--asS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~w 121 (288)
T COG4814 45 AIP-TIFIHGSGGT--ASSLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKW 121 (288)
T ss_pred ccc-eEEEecCCCC--hhHHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHH
Confidence 455 6789996655 345556666665544 45677776664221111 1000 000111111334
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC-----ceeEEEecCCccchhhhccCCCCCCchhhhhccCc
Q 003363 655 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 729 (826)
Q Consensus 655 ~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (826)
+..++.+|.++.. -.++-++||||||.....++..+.+ .++..|.+++.++.....+.....+. ...
T Consensus 122 lk~~msyL~~~Y~--i~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN~~~l~~de~v~~v------~~~ 193 (288)
T COG4814 122 LKKAMSYLQKHYN--IPKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFNVGNLVPDETVTDV------LKD 193 (288)
T ss_pred HHHHHHHHHHhcC--CceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEecccccccccCCCcchhee------ecc
Confidence 5667778888854 4689999999999999888876532 35555655555442111111111000 000
Q ss_pred CCccCCCCCChhhHHHHhhcCcccccCCC--CCcEEEEEeCCCC------CCCcHHHHHHHHHHHhCCCCEEEEEeCCC-
Q 003363 730 GKDSFTESPSVEDLTRFHSKSPISHISKV--KTPTIFLLGAQDL------RVPVSNGLQYARALREKGVETKVIVFPND- 800 (826)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i--~~PvLii~G~~D~------~vp~~~~~~~~~~l~~~g~~~~~~~~p~~- 800 (826)
... ....+. ..|+.. ....+ ++-+|+|.|+.|. .||...+...+..+...+..+.-.+|+|.
T Consensus 194 ~~~-~~~t~y----~~y~~~----n~k~v~~~~evl~IaGDl~dg~~tDG~Vp~assls~~~lf~~~~ksy~e~~~~Gk~ 264 (288)
T COG4814 194 GPG-LIKTPY----YDYIAK----NYKKVSPNTEVLLIAGDLDDGKQTDGAVPWASSLSIYHLFKKNGKSYIESLYKGKD 264 (288)
T ss_pred Ccc-ccCcHH----HHHHHh----cceeCCCCcEEEEEecccccCCcCCCceechHhHHHHHHhccCcceeEEEeeeCCc
Confidence 000 001111 111111 11112 3669999998764 58888888898888888777776677764
Q ss_pred -CCCCCCCCCHHHHHHHHHHHHH
Q 003363 801 -VHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 801 -~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
.|.-..+ +. .+...+..||-
T Consensus 265 a~Hs~lhe-n~-~v~~yv~~FLw 285 (288)
T COG4814 265 ARHSKLHE-NP-TVAKYVKNFLW 285 (288)
T ss_pred chhhccCC-Ch-hHHHHHHHHhh
Confidence 5765433 32 45566666664
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0095 Score=66.24 Aligned_cols=322 Identities=11% Similarity=0.044 Sum_probs=161.3
Q ss_pred ccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCc
Q 003363 123 NKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTV 200 (826)
Q Consensus 123 ~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~ 200 (826)
+.....+..|++.........++.. .+.+....+++||..++++.++. +..+|+ ..+..++..+-+..
T Consensus 167 g~~D~~v~vwnl~~~~tcl~~~~~H-----~S~vtsL~~~~d~~~~ls~~RDk-----vi~vwd~~~~~~l~~lp~ye~~ 236 (775)
T KOG0319|consen 167 GATDGTVRVWNLNDKRTCLHTMILH-----KSAVTSLAFSEDSLELLSVGRDK-----VIIVWDLVQYKKLKTLPLYESL 236 (775)
T ss_pred cCCCceEEEEEcccCchHHHHHHhh-----hhheeeeeeccCCceEEEeccCc-----EEEEeehhhhhhhheechhhhe
Confidence 3445566666654332211111112 25688999999999999886554 888884 33444444444455
Q ss_pred cccccCCCcccceeecCC-----CCeEEEEeecCCCCCCCccCCCCCCCCC--CccCCCCCCcceeecCCCccCCCccCc
Q 003363 201 HGSVYADGWFEGISWNSD-----ETLIAYVAEEPSPSKPTFSLGSTKGGSS--DKDCNSWKGQGDWEEDWGETYAGKRQP 273 (826)
Q Consensus 201 ~g~v~~~~~~~~~~wSPD-----g~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~g~~~~~~~~~ 273 (826)
. +...-++ |.++..+.+..... .|+....+.... ..+... ......-+.-+..+.-....
T Consensus 237 E----------~vv~l~~~~~~~~~~~~TaG~~g~~~--~~d~es~~~~~~~~~~~~~e-~~~~~~~~~~~~~l~vtaeQ 303 (775)
T KOG0319|consen 237 E----------SVVRLREELGGKGEYIITAGGSGVVQ--YWDSESGKCVYKQRQSDSEE-IDHLLAIESMSQLLLVTAEQ 303 (775)
T ss_pred e----------eEEEechhcCCcceEEEEecCCceEE--EEecccchhhhhhccCCchh-hhcceeccccCceEEEEccc
Confidence 3 3333333 34444444443322 222111111100 000000 11111111112222233457
Q ss_pred eEEEEEccCCceE-eccCCCCCCccceEE-EeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhh
Q 003363 274 SLFVININSGEVQ-AVKGIPKSLSVGQVV-WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (826)
Q Consensus 274 ~l~v~d~~~g~~~-~l~~~~~~~~~~~~~-wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (826)
+|+++|.++.++. ++ ...+..+.++. |-|+.+. ++..++.. .|.++++
T Consensus 304 nl~l~d~~~l~i~k~i--vG~ndEI~Dm~~lG~e~~~----laVATNs~---------------~lr~y~~--------- 353 (775)
T KOG0319|consen 304 NLFLYDEDELTIVKQI--VGYNDEILDMKFLGPEESH----LAVATNSP---------------ELRLYTL--------- 353 (775)
T ss_pred eEEEEEccccEEehhh--cCCchhheeeeecCCccce----EEEEeCCC---------------ceEEEec---------
Confidence 8999998888754 34 22233455665 6677776 77766432 4555566
Q ss_pred hhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEe---------------------
Q 003363 352 LELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID--------------------- 410 (826)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d--------------------- 410 (826)
.+....-+..+...+.+.....+|-.|+-.+.+. ...||++|
T Consensus 354 --------~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~---------svilWr~~~~~~~~~~~a~~~gH~~svga 416 (775)
T KOG0319|consen 354 --------PTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDK---------SVILWRLNNNCSKSLCVAQANGHTNSVGA 416 (775)
T ss_pred --------CCCceEEEeCchhheeeeeecccCcEEEEecCCc---------eEEEEEecCCcchhhhhhhhcccccccce
Confidence 5555666666665555555445554444333221 23344441
Q ss_pred --CCCCCC-CCcccceeeeeeeeeccCC--CCCcc---------cccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECC
Q 003363 411 --WPTNGN-FSSLEKIVDVIPVVQCAEG--DCFPG---------LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 476 (826)
Q Consensus 411 --~~~~~~-~~~~~~~~~~~~~~~~~~~--~~f~g---------~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~ 476 (826)
...++. ..++.+.+..+++|..+.+ ..++- .++-.++.++.+|+.+ |+.+.+.+....||.++
T Consensus 417 va~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le-- 493 (775)
T KOG0319|consen 417 VAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLE-- 493 (775)
T ss_pred eeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeeccc--
Confidence 111111 1222333446777776652 23332 2334567888999987 77777777788888776
Q ss_pred CCcEEEecCCC-CCeeeEEEeecCCEEEEEEeCCCCCCeEEEEe
Q 003363 477 SGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 519 (826)
Q Consensus 477 tg~~~~lt~~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~ 519 (826)
.+.+.-...++ ..+....|++... +++++++..+ -.||-++
T Consensus 494 ~~~l~~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~T-vKIW~is 535 (775)
T KOG0319|consen 494 QLRLLGVLSGHTRGVWCVSFSKNDQ-LLATCSGDKT-VKIWSIS 535 (775)
T ss_pred CceEEEEeeCCccceEEEEeccccc-eeEeccCCce-EEEEEec
Confidence 44444333333 3444456776544 5555554433 4466544
|
|
| >PTZ00472 serine carboxypeptidase (CBP1); Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00081 Score=75.17 Aligned_cols=131 Identities=16% Similarity=0.166 Sum_probs=79.5
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch----------------HHHHHHHHCCcEEEEECC-CCCCCC
Q 003363 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS----------------KSLAFLSSVGYSLLIVNY-RGSLGF 635 (826)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~----------------~~~~~la~~G~~Vl~~d~-rG~~g~ 635 (826)
+..+..|++...+ .....|+||+++|||+........ .....+.+. ..++.+|. +|. |+
T Consensus 60 ~~~lFyw~~~s~~--~~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~-~~~l~iDqP~G~-G~ 135 (462)
T PTZ00472 60 DKHYFYWAFGPRN--GNPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNE-AYVIYVDQPAGV-GF 135 (462)
T ss_pred CceEEEEEEEcCC--CCCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccc-cCeEEEeCCCCc-Cc
Confidence 4568888887663 456789999999999875321000 000012222 46777785 563 34
Q ss_pred chhhhhcCCCCCCcchHHHHHHHHHHHHHc-CCCCCCcEEEEEecchHHHHHHHHHhC----------CCceeEEEecCC
Q 003363 636 GEEALQSLPGKVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQA----------PDKFVAAAARNP 704 (826)
Q Consensus 636 G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~a~~~----------p~~~~a~v~~~p 704 (826)
+........ ..-....+|+..+++.+.++ +.....++.|+|+||||..+..++.+- .-.++++++.+|
T Consensus 136 S~~~~~~~~-~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg 214 (462)
T PTZ00472 136 SYADKADYD-HNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNG 214 (462)
T ss_pred ccCCCCCCC-CChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEecc
Confidence 332111111 11122367777777766553 444568899999999999887776542 114789999999
Q ss_pred ccch
Q 003363 705 LCNL 708 (826)
Q Consensus 705 ~~~~ 708 (826)
+++.
T Consensus 215 ~~dp 218 (462)
T PTZ00472 215 LTDP 218 (462)
T ss_pred ccCh
Confidence 8765
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.005 Score=63.42 Aligned_cols=225 Identities=14% Similarity=0.148 Sum_probs=127.5
Q ss_pred CCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCC-eEEEEeecCCCCCCCccCC
Q 003363 163 PSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVAEEPSPSKPTFSLG 239 (826)
Q Consensus 163 PdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~-~ia~~~~~~~~~~~~~~~~ 239 (826)
-+.++||++-+..+|.. +.+|. ..|+.-.-..+-.+..+.| ..+.|.|-.. .||..+++
T Consensus 42 vNPkfiAvi~easgGga-f~ViPl~k~Gr~d~~~P~v~GHt~~v------LDi~w~PfnD~vIASgSeD----------- 103 (472)
T KOG0303|consen 42 VNPKFVAVIIEASGGGA-FLVIPLVKTGRMDASYPLVCGHTAPV------LDIDWCPFNDCVIASGSED----------- 103 (472)
T ss_pred cCCceEEEEEecCCCcc-eeecccccccccCCCCCCccCccccc------cccccCccCCceeecCCCC-----------
Confidence 36688888876653322 33343 3343333222233444555 7889999654 44444333
Q ss_pred CCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEcc-CCce-------EeccCCCCCCccceEEEeeCCCCCcc
Q 003363 240 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGEV-------QAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-~g~~-------~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
..|.+|.+- .|.. ..| ....-.++.+.|.|-...
T Consensus 104 ---------------------------------~~v~vW~IPe~~l~~~ltepvv~L--~gH~rrVg~V~wHPtA~N--- 145 (472)
T KOG0303|consen 104 ---------------------------------TKVMVWQIPENGLTRDLTEPVVEL--YGHQRRVGLVQWHPTAPN--- 145 (472)
T ss_pred ---------------------------------ceEEEEECCCcccccCcccceEEE--eecceeEEEEeecccchh---
Confidence 455666543 2322 223 223346788999998887
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEe
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLS 390 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s 390 (826)
+.+++- .++.+..+++ .+|+ ...|. +..-+.+..|+-||.+|+-..
T Consensus 146 -VLlsag--------------~Dn~v~iWnv-----------------~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttc 192 (472)
T KOG0303|consen 146 -VLLSAG--------------SDNTVSIWNV-----------------GTGEALITLD-HPDMVYSMSFNRDGSLLCTTC 192 (472)
T ss_pred -hHhhcc--------------CCceEEEEec-----------------cCCceeeecC-CCCeEEEEEeccCCceeeeec
Confidence 777651 2347889998 6665 34555 777789999999999998666
Q ss_pred ccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEE--eCCeE
Q 003363 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI--WGSSQ 468 (826)
Q Consensus 391 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~--~~~~~ 468 (826)
.+ ..|.+||..+++....-. ...+ ....+..|..||+ | +++. ..+..
T Consensus 193 kD-----------KkvRv~dpr~~~~v~e~~-----------~heG-------~k~~Raifl~~g~-i-~tTGfsr~seR 241 (472)
T KOG0303|consen 193 KD-----------KKVRVIDPRRGTVVSEGV-----------AHEG-------AKPARAIFLASGK-I-FTTGFSRMSER 241 (472)
T ss_pred cc-----------ceeEEEcCCCCcEeeecc-----------cccC-------CCcceeEEeccCc-e-eeecccccccc
Confidence 54 358999987765421110 0011 1223667899997 4 4443 23455
Q ss_pred EEEEEECCC----CcEEEecCCCCCeeeEEEeecCCEEEEEEeC
Q 003363 469 VIISVNVSS----GELLRITPAESNFSWSLLTLDGDNIIAVSSS 508 (826)
Q Consensus 469 ~l~~vdl~t----g~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~ 508 (826)
++-++|... +-.+.|-.+.+ +-.+.+++|.+.+|.+.-+
T Consensus 242 q~aLwdp~nl~eP~~~~elDtSnG-vl~PFyD~dt~ivYl~GKG 284 (472)
T KOG0303|consen 242 QIALWDPNNLEEPIALQELDTSNG-VLLPFYDPDTSIVYLCGKG 284 (472)
T ss_pred ceeccCcccccCcceeEEeccCCc-eEEeeecCCCCEEEEEecC
Confidence 566666432 12223322322 3445566666655555443
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0011 Score=68.70 Aligned_cols=170 Identities=18% Similarity=0.070 Sum_probs=92.5
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
..|.+|+...-... +.....+..+.+..|||||+. |++.+.+ ...+++..
T Consensus 166 g~lRv~~~Ps~~t~-l~e~~~~~eV~DL~FS~dgk~----lasig~d----------------~~~VW~~~--------- 215 (398)
T KOG0771|consen 166 GTLRVWEWPSMLTI-LEEIAHHAEVKDLDFSPDGKF----LASIGAD----------------SARVWSVN--------- 215 (398)
T ss_pred ceEEEEecCcchhh-hhhHhhcCccccceeCCCCcE----EEEecCC----------------ceEEEEec---------
Confidence 45666773322211 111445557889999999999 9998821 34445541
Q ss_pred hhhcCCCCCCcceecCCC--CccccCceecCCC---CEEEEEeccCCCCCCCCcccceEEEEeCCCC-CCCCcccceeee
Q 003363 353 ELKESSSEDLPVVNLTES--ISSAFFPRFSPDG---KFLVFLSAKSSVDSGAHSATDSLHRIDWPTN-GNFSSLEKIVDV 426 (826)
Q Consensus 353 ~~~~~~~~~~~~~~Lt~~--~~~~~~p~~SpDG---~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~-~~~~~~~~~~~~ 426 (826)
++....++++. .......+|+-|+ ..+++....+ +..-...++..|++..- ..++...
T Consensus 216 -------~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~----~~~v~~~~~~~w~~~~~l~~~~~~~----- 279 (398)
T KOG0771|consen 216 -------TGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFP----GGGVRLCDISLWSGSNFLRLRKKIK----- 279 (398)
T ss_pred -------cCchhhhcCCcccchhhhhceecccCCCceEEEEEecCC----CCceeEEEeeeeccccccchhhhhh-----
Confidence 33345556633 3346788999888 4445555443 21112233444443210 0011110
Q ss_pred eeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC--CeeeEEEeecCCEEEE
Q 003363 427 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGDNIIA 504 (826)
Q Consensus 427 ~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~--~~~~~~~s~dg~~l~~ 504 (826)
.+ .++..+..|+||+.+.+.+. +|...| ++..+-+..++.+... .+....|+||.+.+.-
T Consensus 280 ----------~~-----~siSsl~VS~dGkf~AlGT~-dGsVai--~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 280 ----------RF-----KSISSLAVSDDGKFLALGTM-DGSVAI--YDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLAS 341 (398)
T ss_pred ----------cc-----CcceeEEEcCCCcEEEEecc-CCcEEE--EEeceeeeeEeehhhheeeeeeEEEcCCcCcccc
Confidence 11 14567788999997776654 444444 4555555555555443 4455678998887665
Q ss_pred EE
Q 003363 505 VS 506 (826)
Q Consensus 505 ~~ 506 (826)
++
T Consensus 342 vS 343 (398)
T KOG0771|consen 342 VS 343 (398)
T ss_pred cc
Confidence 33
|
|
| >PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00082 Score=68.92 Aligned_cols=111 Identities=15% Similarity=0.192 Sum_probs=74.7
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-c----chHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCC
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-S----YSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~----~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~ 646 (826)
|+..+.+..+.=+ ..++..-||+.-|.+...... . .........+.|..|+++||||-+.+-. +..
T Consensus 120 D~~~IDt~~I~~~---~a~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg~S~G------~~s 190 (365)
T PF05677_consen 120 DGVKIDTMAIHQP---EAKPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVGSSTG------PPS 190 (365)
T ss_pred CCEEEEEEEeeCC---CCCCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCccccCCC------CCC
Confidence 6778888776522 235567788887744332111 1 1234445567899999999999543211 111
Q ss_pred CCcchHHHHHHHHHHHHHcC-CCCCCcEEEEEecchHHHHHHHHHhC
Q 003363 647 VGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQA 692 (826)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~-~~d~~rv~l~G~S~GG~~a~~~a~~~ 692 (826)
...-+.|..+.++||.++. .+.+++|.+.|||.||.+++.++.++
T Consensus 191 -~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 191 -RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred -HHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 1234788999999999853 47889999999999999998876654
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0021 Score=72.35 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=60.2
Q ss_pred eeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCce
Q 003363 258 DWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCAL 337 (826)
Q Consensus 258 ~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l 337 (826)
.|+.+ +-+++...+..+.+|++...+.-.+ ....-.++.++|.|-... |++-.+ -++.+
T Consensus 376 SWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~--F~HndfVTcVaFnPvDDr---yFiSGS---------------LD~Kv 434 (712)
T KOG0283|consen 376 SWSKN-NFLLSSSMDKTVRLWHPGRKECLKV--FSHNDFVTCVAFNPVDDR---YFISGS---------------LDGKV 434 (712)
T ss_pred ccccC-CeeEeccccccEEeecCCCcceeeE--EecCCeeEEEEecccCCC---cEeecc---------------cccce
Confidence 35544 4445555677888888887766555 455567899999995554 033333 22355
Q ss_pred EEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 338 YAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 338 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
.++++ ...++.--++-..-++...|+|||+..+..+..
T Consensus 435 RiWsI-----------------~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~ 472 (712)
T KOG0283|consen 435 RLWSI-----------------SDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFN 472 (712)
T ss_pred EEeec-----------------CcCeeEeehhhhhhheeEEeccCCceEEEEEec
Confidence 55665 233333333334557889999999987766654
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0042 Score=62.13 Aligned_cols=187 Identities=12% Similarity=0.117 Sum_probs=105.9
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (826)
....||+-|..||.... ++.+.+||..|-.+-++.
T Consensus 27 ~~~~Fs~~G~~lAvGc~--------------------------------------------nG~vvI~D~~T~~iar~l- 61 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCA--------------------------------------------NGRVVIYDFDTFRIARML- 61 (405)
T ss_pred ceEEeccCcceeeeecc--------------------------------------------CCcEEEEEccccchhhhh-
Confidence 58899999999998644 356888998887655441
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC
Q 003363 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 370 (826)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 370 (826)
...-..+.+++||+||+. |+-.+ ++..+-.+|+- .+....++.-
T Consensus 62 saH~~pi~sl~WS~dgr~----LltsS---------------~D~si~lwDl~----------------~gs~l~rirf- 105 (405)
T KOG1273|consen 62 SAHVRPITSLCWSRDGRK----LLTSS---------------RDWSIKLWDLL----------------KGSPLKRIRF- 105 (405)
T ss_pred hccccceeEEEecCCCCE----eeeec---------------CCceeEEEecc----------------CCCceeEEEc-
Confidence 333447789999999998 87766 44567788872 2223333321
Q ss_pred CccccCceecCCCCEEEEEe-ccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCC
Q 003363 371 ISSAFFPRFSPDGKFLVFLS-AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 449 (826)
Q Consensus 371 ~~~~~~p~~SpDG~~l~f~s-~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 449 (826)
...+....|.|-.+..+... .+. +-+++++.....+.+..+.+ ++.. ......
T Consensus 106 ~spv~~~q~hp~k~n~~va~~~~~-----------sp~vi~~s~~~h~~Lp~d~d-----------~dln----~sas~~ 159 (405)
T KOG1273|consen 106 DSPVWGAQWHPRKRNKCVATIMEE-----------SPVVIDFSDPKHSVLPKDDD-----------GDLN----SSASHG 159 (405)
T ss_pred cCccceeeeccccCCeEEEEEecC-----------CcEEEEecCCceeeccCCCc-----------cccc----cccccc
Confidence 22355566776544333332 221 12344444322222222221 1110 011223
Q ss_pred ccccCCCEEEEEEEeCCeEEEEEEECCCCcEE---EecCCCCCeeeEEEeecCCEEEEEEeC
Q 003363 450 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELL---RITPAESNFSWSLLTLDGDNIIAVSSS 508 (826)
Q Consensus 450 ~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~---~lt~~~~~~~~~~~s~dg~~l~~~~s~ 508 (826)
.|.+-|++|+..+ +...|..+|..|-+.. +++.. ..+-...++..|..+++..++
T Consensus 160 ~fdr~g~yIitGt---sKGkllv~~a~t~e~vas~rits~-~~IK~I~~s~~g~~liiNtsD 217 (405)
T KOG1273|consen 160 VFDRRGKYIITGT---SKGKLLVYDAETLECVASFRITSV-QAIKQIIVSRKGRFLIINTSD 217 (405)
T ss_pred cccCCCCEEEEec---CcceEEEEecchheeeeeeeechh-eeeeEEEEeccCcEEEEecCC
Confidence 5788899887543 3445666676665433 33331 224455788888877776654
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0028 Score=71.17 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=67.0
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
....|.++|..+.++.+.. ......+.+++||||||+ |+..+ .++.|..+|+
T Consensus 554 ddf~I~vvD~~t~kvvR~f-~gh~nritd~~FS~DgrW----lisas---------------mD~tIr~wDl-------- 605 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREF-WGHGNRITDMTFSPDGRW----LISAS---------------MDSTIRTWDL-------- 605 (910)
T ss_pred CceeEEEEEchhhhhhHHh-hccccceeeeEeCCCCcE----EEEee---------------cCCcEEEEec--------
Confidence 4578999999887765542 223446789999999999 98887 4458999999
Q ss_pred hhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEe
Q 003363 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 410 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d 410 (826)
.++....-..-...+.+.+|||.|.+||....+. ..||+|.
T Consensus 606 ---------pt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~----------~gIylWs 646 (910)
T KOG1539|consen 606 ---------PTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQ----------NGIYLWS 646 (910)
T ss_pred ---------cCcceeeeEecCCcceeeEECCCCCEEEEEEecC----------ceEEEEE
Confidence 4444332222334578899999999999777653 4588883
|
|
| >PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3 | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0001 Score=78.21 Aligned_cols=114 Identities=15% Similarity=0.194 Sum_probs=63.2
Q ss_pred CCCCcEEEEEcCCCCCCCCccc-hHHHHHH-HH--CCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHH
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSY-SKSLAFL-SS--VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 664 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~-~~~~~~l-a~--~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 664 (826)
+...|++|++||.........| ......+ .. ..+.|+++|+...... ....+. ..-......+...+..|.+
T Consensus 68 n~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~--~Y~~a~--~n~~~vg~~la~~l~~L~~ 143 (331)
T PF00151_consen 68 NPSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASN--NYPQAV--ANTRLVGRQLAKFLSFLIN 143 (331)
T ss_dssp -TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS---HHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhccc--cccchh--hhHHHHHHHHHHHHHHHHh
Confidence 4578999999996655422233 3344444 34 5899999998631100 000000 0000112345556777775
Q ss_pred cCCCCCCcEEEEEecchHHHHHHHHHhCCC--ceeEEEecCCcc
Q 003363 665 MGLANPSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNPLC 706 (826)
Q Consensus 665 ~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~p~~ 706 (826)
...++.++|.|+|||+||+++..+...... ++..+....|.-
T Consensus 144 ~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAg 187 (331)
T PF00151_consen 144 NFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAG 187 (331)
T ss_dssp HH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-
T ss_pred hcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCccc
Confidence 555889999999999999999988877666 777787777653
|
1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A .... |
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.027 Score=56.28 Aligned_cols=110 Identities=23% Similarity=0.317 Sum_probs=72.2
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
.++..+|||.-..++. ...-++..++|++.+.|.... .......|.| ..+.||-||.+++..+-+
T Consensus 29 sIS~l~FSP~~~~~~~-A~SWD~tVR~wevq~~g~~~~--ka~~~~~~Pv------L~v~WsddgskVf~g~~D------ 93 (347)
T KOG0647|consen 29 SISALAFSPQADNLLA-AGSWDGTVRIWEVQNSGQLVP--KAQQSHDGPV------LDVCWSDDGSKVFSGGCD------ 93 (347)
T ss_pred chheeEeccccCceEE-ecccCCceEEEEEecCCcccc--hhhhccCCCe------EEEEEccCCceEEeeccC------
Confidence 4889999995444443 333346666777765443332 1111222333 799999999877665333
Q ss_pred CccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003363 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (826)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lv 314 (826)
.++-+||+.++++.++ -..+..+....|-+-..+ ++|+
T Consensus 94 --------------------------------------k~~k~wDL~S~Q~~~v--~~Hd~pvkt~~wv~~~~~--~cl~ 131 (347)
T KOG0647|consen 94 --------------------------------------KQAKLWDLASGQVSQV--AAHDAPVKTCHWVPGMNY--QCLV 131 (347)
T ss_pred --------------------------------------CceEEEEccCCCeeee--eecccceeEEEEecCCCc--ceeE
Confidence 4688899999999998 566677888889887663 4467
Q ss_pred EEeecCc
Q 003363 315 FVGWSSE 321 (826)
Q Consensus 315 f~~~~~~ 321 (826)
-.+|+..
T Consensus 132 TGSWDKT 138 (347)
T KOG0647|consen 132 TGSWDKT 138 (347)
T ss_pred ecccccc
Confidence 7777654
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.037 Score=58.00 Aligned_cols=208 Identities=14% Similarity=0.160 Sum_probs=125.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
..+..+.++|+-..++..+.+. .+.+|. +....+..- ....+.| ..++-.|.|++++..+.++.
T Consensus 262 kki~~v~~~~~~~~v~~aSad~-----~i~vws~~~~s~~~~~--~~h~~~V------~~ls~h~tgeYllsAs~d~~-- 326 (506)
T KOG0289|consen 262 KKITSVKFHKDLDTVITASADE-----IIRVWSVPLSSEPTSS--RPHEEPV------TGLSLHPTGEYLLSASNDGT-- 326 (506)
T ss_pred eEEEEEEeccchhheeecCCcc-----eEEeeccccccCcccc--ccccccc------eeeeeccCCcEEEEecCCce--
Confidence 3477889999988877654443 678882 222221111 1112222 78889999999988776541
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc-eEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
...-|+.+|. ...+.....+......+|.|||-
T Consensus 327 ------------------------------------------w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL---- 360 (506)
T KOG0289|consen 327 ------------------------------------------WAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL---- 360 (506)
T ss_pred ------------------------------------------EEEEEccCCcEEEEEeeccccceeEEeeEcCCce----
Confidence 1122334433 22221011234566889999987
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEec
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~ 391 (826)
| |.... .++.|-++|+. ......+...+.+.+....||.+|=+|+....
T Consensus 361 -i-fgtgt-------------~d~~vkiwdlk----------------s~~~~a~Fpght~~vk~i~FsENGY~Lat~ad 409 (506)
T KOG0289|consen 361 -I-FGTGT-------------PDGVVKIWDLK----------------SQTNVAKFPGHTGPVKAISFSENGYWLATAAD 409 (506)
T ss_pred -E-EeccC-------------CCceEEEEEcC----------------CccccccCCCCCCceeEEEeccCceEEEEEec
Confidence 3 43311 23467788883 22345666677888999999999999987775
Q ss_pred cCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003363 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (826)
Q Consensus 392 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (826)
+. .+.+||+....... .+..+. + ..+..+.|...|++|... +....+|
T Consensus 410 d~-----------~V~lwDLRKl~n~k----------t~~l~~---~-----~~v~s~~fD~SGt~L~~~---g~~l~Vy 457 (506)
T KOG0289|consen 410 DG-----------SVKLWDLRKLKNFK----------TIQLDE---K-----KEVNSLSFDQSGTYLGIA---GSDLQVY 457 (506)
T ss_pred CC-----------eEEEEEehhhcccc----------eeeccc---c-----ccceeEEEcCCCCeEEee---cceeEEE
Confidence 52 38899987643211 000000 0 024467788889877665 6677899
Q ss_pred EEECCCCcEEEecC
Q 003363 472 SVNVSSGELLRITP 485 (826)
Q Consensus 472 ~vdl~tg~~~~lt~ 485 (826)
.++-.+++.+.+..
T Consensus 458 ~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 458 ICKKKTKSWTEIKE 471 (506)
T ss_pred EEecccccceeeeh
Confidence 99877877776643
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.011 Score=62.03 Aligned_cols=152 Identities=15% Similarity=0.114 Sum_probs=97.4
Q ss_pred ceEEEEEccCC--ceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 273 PSLFVININSG--EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 273 ~~l~v~d~~~g--~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
..|.+||+.++ ++... .......+..+.|+|-+.. |+-++. -+..|.++|+..
T Consensus 250 ~~L~iwD~R~~~~~~~~~-~~ah~~~vn~~~fnp~~~~----ilAT~S--------------~D~tV~LwDlRn------ 304 (422)
T KOG0264|consen 250 GKLMIWDTRSNTSKPSHS-VKAHSAEVNCVAFNPFNEF----ILATGS--------------ADKTVALWDLRN------ 304 (422)
T ss_pred CeEEEEEcCCCCCCCccc-ccccCCceeEEEeCCCCCc----eEEecc--------------CCCcEEEeechh------
Confidence 67999998853 33222 1233456778999998887 776652 234788888832
Q ss_pred hhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccce-eeeeee
Q 003363 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI-VDVIPV 429 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~ 429 (826)
-......+..+...+....|||+-..++-.+..+ ..|.+||+..=+..+..... +....+
T Consensus 305 ---------L~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D----------~rl~vWDls~ig~eq~~eda~dgppEl 365 (422)
T KOG0264|consen 305 ---------LNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD----------RRLNVWDLSRIGEEQSPEDAEDGPPEL 365 (422)
T ss_pred ---------cccCceeccCCCcceEEEEeCCCCCceeEecccC----------CcEEEEeccccccccChhhhccCCcce
Confidence 2234566677778899999999998877666433 56889998753332221111 111110
Q ss_pred eeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003363 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (826)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vd 474 (826)
.- ..|.+...+..+.|.|+.-+++.+...++..+||.+.
T Consensus 366 lF------~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 366 LF------IHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred eE------EecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 00 0112334577899999999999988888888888764
|
|
| >PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids [] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00034 Score=69.10 Aligned_cols=89 Identities=25% Similarity=0.459 Sum_probs=54.0
Q ss_pred EEEEcCCCCCCCCccchHHHHHHHHCCcE---EEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 595 IVVLHGGPHSVSLSSYSKSLAFLSSVGYS---LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 595 vv~~HGg~~~~~~~~~~~~~~~la~~G~~---Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
||++||.... ....|......|.++||. |++++|-.... ........ .....+.++.+.|+.+++. ...
T Consensus 4 VVlVHG~~~~-~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~--~~~~~~~~--~~~~~~~~l~~fI~~Vl~~--TGa- 75 (219)
T PF01674_consen 4 VVLVHGTGGN-AYSNWSTLAPYLKAAGYCDSEVYALTYGSGNG--SPSVQNAH--MSCESAKQLRAFIDAVLAY--TGA- 75 (219)
T ss_dssp EEEE--TTTT-TCGGCCHHHHHHHHTT--CCCEEEE--S-CCH--HTHHHHHH--B-HHHHHHHHHHHHHHHHH--HT--
T ss_pred EEEECCCCcc-hhhCHHHHHHHHHHcCCCcceeEeccCCCCCC--CCcccccc--cchhhHHHHHHHHHHHHHh--hCC-
Confidence 8889996542 256788899999999999 89999854221 11111000 1112356788888888775 335
Q ss_pred cEEEEEecchHHHHHHHHHh
Q 003363 672 KVTVVGGSHGGFLTTHLIGQ 691 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~ 691 (826)
+|-|+|||+||.++.+++..
T Consensus 76 kVDIVgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 76 KVDIVGHSMGGTIARYYIKG 95 (219)
T ss_dssp -EEEEEETCHHHHHHHHHHH
T ss_pred EEEEEEcCCcCHHHHHHHHH
Confidence 99999999999999888754
|
This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A .... |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0052 Score=65.80 Aligned_cols=74 Identities=24% Similarity=0.314 Sum_probs=49.8
Q ss_pred CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCC
Q 003363 370 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 449 (826)
Q Consensus 370 ~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 449 (826)
..+.+....|||||++||.++.+. -|.++|.++.+...+... |-.++.-+
T Consensus 289 ~~g~in~f~FS~DG~~LA~VSqDG-----------fLRvF~fdt~eLlg~mkS-------------------YFGGLLCv 338 (636)
T KOG2394|consen 289 GEGSINEFAFSPDGKYLATVSQDG-----------FLRIFDFDTQELLGVMKS-------------------YFGGLLCV 338 (636)
T ss_pred ccccccceeEcCCCceEEEEecCc-----------eEEEeeccHHHHHHHHHh-------------------hccceEEE
Confidence 344677889999999999999773 377888877544322111 44456677
Q ss_pred ccccCCCEEEEEEEeCCeEEEEEEE
Q 003363 450 PWLSDGCTMLLSSIWGSSQVIISVN 474 (826)
Q Consensus 450 ~ws~Dg~~l~~~~~~~~~~~l~~vd 474 (826)
+||||||+|+ +..++.-..+|.+.
T Consensus 339 cWSPDGKyIv-tGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 339 CWSPDGKYIV-TGGEDDLVTVWSFE 362 (636)
T ss_pred EEcCCccEEE-ecCCcceEEEEEec
Confidence 9999999765 43444455666654
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0063 Score=64.42 Aligned_cols=230 Identities=11% Similarity=0.045 Sum_probs=131.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc--eeEEEe-cCCCccccccCCCcccceeecCCCCeEEEEeecCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ--LEKEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~--~~~~~~-~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~ 230 (826)
..++...|-.||+.+|-.. ......+.+... ..+..+ ....+ ....|+|++..++..+.+.
T Consensus 69 ~~v~s~~fR~DG~LlaaGD-----~sG~V~vfD~k~r~iLR~~~ah~apv----------~~~~f~~~d~t~l~s~sDd- 132 (487)
T KOG0310|consen 69 DVVYSVDFRSDGRLLAAGD-----ESGHVKVFDMKSRVILRQLYAHQAPV----------HVTKFSPQDNTMLVSGSDD- 132 (487)
T ss_pred cceeEEEeecCCeEEEccC-----CcCcEEEeccccHHHHHHHhhccCce----------eEEEecccCCeEEEecCCC-
Confidence 3588899999999888632 222444443111 111111 12222 5788999998887765543
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003363 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
..+-.||+.++.+ +++-....-.+...+|+|-...
T Consensus 133 ------------------------------------------~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~h-- 167 (487)
T KOG0310|consen 133 ------------------------------------------KVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDH-- 167 (487)
T ss_pred ------------------------------------------ceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCe--
Confidence 3466788888876 4321344457778899999888
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEe
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 390 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s 390 (826)
|++++. .+..|..+|+.. .+.....| ++...+.+..+-|.|..|+-.+
T Consensus 168 --ivvtGs--------------YDg~vrl~DtR~---------------~~~~v~el-nhg~pVe~vl~lpsgs~iasAg 215 (487)
T KOG0310|consen 168 --IVVTGS--------------YDGKVRLWDTRS---------------LTSRVVEL-NHGCPVESVLALPSGSLIASAG 215 (487)
T ss_pred --EEEecC--------------CCceEEEEEecc---------------CCceeEEe-cCCCceeeEEEcCCCCEEEEcC
Confidence 988872 223566777621 22222222 3344577888999999887433
Q ss_pred ccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEE
Q 003363 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470 (826)
Q Consensus 391 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l 470 (826)
.+++.+||+-+|+........ +.-.+..+.+..|++.|+ ++.-++...+
T Consensus 216 ------------Gn~vkVWDl~~G~qll~~~~~------------------H~KtVTcL~l~s~~~rLl-S~sLD~~VKV 264 (487)
T KOG0310|consen 216 ------------GNSVKVWDLTTGGQLLTSMFN------------------HNKTVTCLRLASDSTRLL-SGSLDRHVKV 264 (487)
T ss_pred ------------CCeEEEEEecCCceehhhhhc------------------ccceEEEEEeecCCceEe-ecccccceEE
Confidence 367999999876653221110 001223455666887664 4455566666
Q ss_pred EEEECCCCcEE-EecCCCCCeeeEEEeecCCEEEEEEeCCC
Q 003363 471 ISVNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVSSSPV 510 (826)
Q Consensus 471 ~~vdl~tg~~~-~lt~~~~~~~~~~~s~dg~~l~~~~s~~~ 510 (826)
|.+ .+-++. .+.-.. .+-...+++++..+++-.++..
T Consensus 265 fd~--t~~Kvv~s~~~~~-pvLsiavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 265 FDT--TNYKVVHSWKYPG-PVLSIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred EEc--cceEEEEeeeccc-ceeeEEecCCCceEEEecccce
Confidence 652 222222 222222 2333467777777766655543
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.012 Score=64.87 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=96.6
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003363 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (826)
Q Consensus 103 ~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (826)
..||||+.|+|..-. ...++.++-.. .....+....+...-.....+++-|+.++++++.. ..++.
T Consensus 389 aiSPdg~~Ia~st~~----------~~~iy~L~~~~-~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~---~~~le 454 (691)
T KOG2048|consen 389 AISPDGNLIAISTVS----------RTKIYRLQPDP-NVKVINVDDVPLALLDASAISFTIDKNKLFLVSKN---IFSLE 454 (691)
T ss_pred ccCCCCCEEEEeecc----------ceEEEEeccCc-ceeEEEeccchhhhccceeeEEEecCceEEEEecc---cceeE
Confidence 348999999997532 22333343322 22222223334444568889999999999998832 22345
Q ss_pred EEec-CCceeEEEec-CCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceee
Q 003363 183 ELWS-QSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (826)
Q Consensus 183 ~i~~-~~~~~~~~~~-~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (826)
++.. +.....+... ++..-+.| ..+.-||||++||-++.
T Consensus 455 ~~el~~ps~kel~~~~~~~~~~~I------~~l~~SsdG~yiaa~~t--------------------------------- 495 (691)
T KOG2048|consen 455 EFELETPSFKELKSIQSQAKCPSI------SRLVVSSDGNYIAAIST--------------------------------- 495 (691)
T ss_pred EEEecCcchhhhhccccccCCCcc------eeEEEcCCCCEEEEEec---------------------------------
Confidence 5552 2222222222 12222223 78899999999998752
Q ss_pred cCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEE
Q 003363 261 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 340 (826)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~ 340 (826)
...|+++++++++.+.+.. .-+..+..++++|..+.. |+... .++++|.+
T Consensus 496 -----------~g~I~v~nl~~~~~~~l~~-rln~~vTa~~~~~~~~~~---lvvat---------------s~nQv~ef 545 (691)
T KOG2048|consen 496 -----------RGQIFVYNLETLESHLLKV-RLNIDVTAAAFSPFVRNR---LVVAT---------------SNNQVFEF 545 (691)
T ss_pred -----------cceEEEEEcccceeecchh-ccCcceeeeeccccccCc---EEEEe---------------cCCeEEEE
Confidence 3689999999999887731 223677888999766552 55543 23489999
Q ss_pred Ec
Q 003363 341 RV 342 (826)
Q Consensus 341 d~ 342 (826)
|+
T Consensus 546 di 547 (691)
T KOG2048|consen 546 DI 547 (691)
T ss_pred ec
Confidence 88
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0005 Score=69.74 Aligned_cols=138 Identities=14% Similarity=0.203 Sum_probs=84.2
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
.+..|+++|...+.+..- .--...-..++|+| .. ..|++ .+.+..||.+|..
T Consensus 208 sDrsIvLyD~R~~~Pl~K--Vi~~mRTN~IswnP--ea----fnF~~-------------a~ED~nlY~~DmR------- 259 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKK--VILTMRTNTICWNP--EA----FNFVA-------------ANEDHNLYTYDMR------- 259 (433)
T ss_pred cCCceEEEecccCCccce--eeeeccccceecCc--cc----cceee-------------ccccccceehhhh-------
Confidence 357899999887764321 11123445789999 44 55765 2355689999973
Q ss_pred hhhhhcCCCCCCcceecC-CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeee
Q 003363 351 ELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 429 (826)
.-.....+. ++...+.+..|||-|+.++-.|-+. .|.++....+..+.+--.. .+
T Consensus 260 ---------~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk-----------sIRIf~~~~~~SRdiYhtk-RM--- 315 (433)
T KOG0268|consen 260 ---------NLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK-----------SIRIFPVNHGHSRDIYHTK-RM--- 315 (433)
T ss_pred ---------hhcccchhhcccceeEEEeccCCCcchhccccccc-----------eEEEeecCCCcchhhhhHh-hh---
Confidence 111222222 3344578899999999988766553 4666665554433221111 00
Q ss_pred eeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003363 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (826)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl 475 (826)
..+..+.||.|+++| ++.+.+++.+||.-+.
T Consensus 316 --------------q~V~~Vk~S~Dskyi-~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 316 --------------QHVFCVKYSMDSKYI-ISGSDDGNVRLWKAKA 346 (433)
T ss_pred --------------heeeEEEEeccccEE-EecCCCcceeeeecch
Confidence 133466799999855 6667778888998664
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.06 Score=56.07 Aligned_cols=133 Identities=15% Similarity=0.133 Sum_probs=70.3
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcce-----ec-CC
Q 003363 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-----NL-TE 369 (826)
Q Consensus 296 ~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~L-t~ 369 (826)
-...++++.++.+ ++|.+ ....||.+|+. +...+ .+ +.
T Consensus 185 ~f~~~~~~~~~~~----~~F~S---------------y~G~v~~~dls-----------------g~~~~~~~~~~~~t~ 228 (342)
T PF06433_consen 185 LFEHPAYSRDGGR----LYFVS---------------YEGNVYSADLS-----------------GDSAKFGKPWSLLTD 228 (342)
T ss_dssp B-S--EEETTTTE----EEEEB---------------TTSEEEEEEET-----------------TSSEEEEEEEESS-H
T ss_pred cccccceECCCCe----EEEEe---------------cCCEEEEEecc-----------------CCcccccCcccccCc
Confidence 3446778877777 88987 33479999883 22221 11 11
Q ss_pred -----C--CccccCceecCCCCEEEEEeccCCCCCCCCccc-ceEEEEeCCCCCCCC-cccceeeeeeeeeccCCCCCcc
Q 003363 370 -----S--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSAT-DSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPG 440 (826)
Q Consensus 370 -----~--~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~-~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~g 440 (826)
+ .+...-.++.+..++|+.+-.+.. .|.|... ..||++|+.+++... +....
T Consensus 229 ~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~--~gsHKdpgteVWv~D~~t~krv~Ri~l~~----------------- 289 (342)
T PF06433_consen 229 AEKADGWRPGGWQLIAYHAASGRLYVLMHQGG--EGSHKDPGTEVWVYDLKTHKRVARIPLEH----------------- 289 (342)
T ss_dssp HHHHTTEEE-SSS-EEEETTTTEEEEEEEE----TT-TTS-EEEEEEEETTTTEEEEEEEEEE-----------------
T ss_pred cccccCcCCcceeeeeeccccCeEEEEecCCC--CCCccCCceEEEEEECCCCeEEEEEeCCC-----------------
Confidence 1 112334567777776665544332 2444433 489999999876532 21111
Q ss_pred cccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC
Q 003363 441 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 488 (826)
Q Consensus 441 ~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~ 488 (826)
...++..+.|.+-+++..+ .+...|+.+|..+|+..+-...-+
T Consensus 290 ----~~~Si~Vsqd~~P~L~~~~-~~~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 290 ----PIDSIAVSQDDKPLLYALS-AGDGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp ----EESEEEEESSSS-EEEEEE-TTTTEEEEEETTT--EEEEE---S
T ss_pred ----ccceEEEccCCCcEEEEEc-CCCCeEEEEeCcCCcEEeehhccC
Confidence 0124456778886766544 345678889999998877655444
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00022 Score=49.33 Aligned_cols=38 Identities=29% Similarity=0.426 Sum_probs=28.1
Q ss_pred eecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEE
Q 003363 365 VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR 408 (826)
Q Consensus 365 ~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~ 408 (826)
++++...+....|.|||||++|+|.+.+.. .+..+||+
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~------~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRND------RGSFDIYV 39 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT--------SSEEEEE
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCCC------CCCcCEEC
Confidence 567777788899999999999999998862 24466764
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.017 Score=60.92 Aligned_cols=97 Identities=14% Similarity=0.103 Sum_probs=51.6
Q ss_pred ccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003363 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (826)
Q Consensus 402 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~ 481 (826)
....|++|++..............+.+.. +...+ ...+..++-.|.. -|+.+.+++|..+||.+.-.-..+.
T Consensus 346 dnG~IaLWs~~KKkplf~~~~AHgv~~~~-----~~~~~--~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~r~i~ 417 (479)
T KOG0299|consen 346 DNGSIALWSLLKKKPLFTSRLAHGVIPEL-----DPVNG--NFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGLRAIN 417 (479)
T ss_pred CCceEEEeeecccCceeEeeccccccCCc-----ccccc--ccceeeeEecccC-ceEEecCCCCceEEEEecCCccccc
Confidence 44678999887765543322222222210 00000 0122334445544 4778888899999999874433444
Q ss_pred EecCC--CCCeeeEEEeecCCEEEEEE
Q 003363 482 RITPA--ESNFSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 482 ~lt~~--~~~~~~~~~s~dg~~l~~~~ 506 (826)
.|..- .+-+....|+.+|+.+++..
T Consensus 418 ~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 418 LLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred eeeecccccEEEEEEEccCCCEEEEec
Confidence 44332 22344456788888666553
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0062 Score=61.18 Aligned_cols=207 Identities=15% Similarity=0.173 Sum_probs=107.4
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcee--EEEecCC-----Cc-cccccCCCcccce-eecCCCCeEEEEee
Q 003363 158 AVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLE--KEFHVPQ-----TV-HGSVYADGWFEGI-SWNSDETLIAYVAE 227 (826)
Q Consensus 158 ~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~--~~~~~~~-----~~-~g~v~~~~~~~~~-~wSPDg~~ia~~~~ 227 (826)
.-.|||||.-|+..+..+ .-.+|.+. +..... ....... .+ .+-||.--|+... +--|+....|..+.
T Consensus 54 gckWSPDGSciL~~sedn--~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDN--CLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred cceeCCCCceEEeecccC--eeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 358999999998776543 33445554 211110 0000000 00 1122222233211 12355555544443
Q ss_pred cCCCCCCCccCCCCCCCCCCcc--CCC-C--CCcceeecCCCccCCCccCceEEEEEc-cCCceEec-c-CCC---C-CC
Q 003363 228 EPSPSKPTFSLGSTKGGSSDKD--CNS-W--KGQGDWEEDWGETYAGKRQPSLFVINI-NSGEVQAV-K-GIP---K-SL 295 (826)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~--~~~-~--~~~~~~~~d~g~~~~~~~~~~l~v~d~-~~g~~~~l-~-~~~---~-~~ 295 (826)
+. +...|+.-.++...+... +.. + .-...|++| |+++...-+..|.++|+ ..|.--.+ + -.. + ..
T Consensus 132 ~~--PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~D-GeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 132 DQ--PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPD-GEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cC--ceeeeeccccccccchhhhhhHHhhhhheeEEecCC-CCeEeecccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 33 333455433433333221 111 1 124568999 56555545677899998 34432221 1 011 1 12
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCcccc
Q 003363 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 375 (826)
Q Consensus 296 ~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~ 375 (826)
.+..++|||-.... ++..+ +.+...||..| ..+....|..+.+.++
T Consensus 209 iisc~a~sP~~~~~---~a~gs-------------Y~q~~giy~~~------------------~~~pl~llggh~gGvT 254 (406)
T KOG2919|consen 209 IISCFAFSPMDSKT---LAVGS-------------YGQRVGIYNDD------------------GRRPLQLLGGHGGGVT 254 (406)
T ss_pred eeeeeeccCCCCcc---eeeec-------------ccceeeeEecC------------------CCCceeeecccCCCee
Confidence 34578999965540 55544 22333566665 4556677777788899
Q ss_pred CceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 376 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 376 ~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
..+|-+||.+|+ ...+. ...|..||+.-
T Consensus 255 hL~~~edGn~lf-sGaRk---------~dkIl~WDiR~ 282 (406)
T KOG2919|consen 255 HLQWCEDGNKLF-SGARK---------DDKILCWDIRY 282 (406)
T ss_pred eEEeccCcCeec-ccccC---------CCeEEEEeehh
Confidence 999999999875 44332 25688998764
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0023 Score=71.03 Aligned_cols=193 Identities=15% Similarity=0.106 Sum_probs=117.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-------CCceeEEEecCCCccccccC-CCcccceeecCCCCeEEEE
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-------QSQLEKEFHVPQTVHGSVYA-DGWFEGISWNSDETLIAYV 225 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-------~~~~~~~~~~~~~~~g~v~~-~~~~~~~~wSPDg~~ia~~ 225 (826)
+.+...+.+|||+..+..+.+. ...+|+ +|..+++..+.. ..+.. ++...+++.||||+.||..
T Consensus 455 gaIWsi~~~pD~~g~vT~saDk-----tVkfWdf~l~~~~~gt~~k~lsl~~---~rtLel~ddvL~v~~Spdgk~LaVs 526 (888)
T KOG0306|consen 455 GAIWSISLSPDNKGFVTGSADK-----TVKFWDFKLVVSVPGTQKKVLSLKH---TRTLELEDDVLCVSVSPDGKLLAVS 526 (888)
T ss_pred cceeeeeecCCCCceEEecCCc-----EEEEEeEEEEeccCcccceeeeecc---ceEEeccccEEEEEEcCCCcEEEEE
Confidence 4578899999999998875543 344441 233333222111 01111 1223899999999999986
Q ss_pred eecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeC
Q 003363 226 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 305 (826)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPD 305 (826)
--+.+... |.....+.-...-+|+-.+-....++|-....++..+.++.+|-++=|....-. ...+-++..+.|-|+
T Consensus 527 LLdnTVkV--yflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~-fAHdDSvm~V~F~P~ 603 (888)
T KOG0306|consen 527 LLDNTVKV--YFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF-FAHDDSVMSVQFLPK 603 (888)
T ss_pred eccCeEEE--EEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh-hcccCceeEEEEccc
Confidence 65554332 111111111122233333344456666666677777888999988877654321 455567889999995
Q ss_pred CCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCE
Q 003363 306 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF 385 (826)
Q Consensus 306 g~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~ 385 (826)
.. +.|++- ++..+-.+|.. .-...+.|..+...+...+.+|+|.+
T Consensus 604 ~~-----~FFt~g--------------KD~kvKqWDg~----------------kFe~iq~L~~H~~ev~cLav~~~G~~ 648 (888)
T KOG0306|consen 604 TH-----LFFTCG--------------KDGKVKQWDGE----------------KFEEIQKLDGHHSEVWCLAVSPNGSF 648 (888)
T ss_pred ce-----eEEEec--------------CcceEEeechh----------------hhhhheeeccchheeeeeEEcCCCCe
Confidence 44 667762 33367778752 33456788888888889999999998
Q ss_pred EEEEecc
Q 003363 386 LVFLSAK 392 (826)
Q Consensus 386 l~f~s~~ 392 (826)
++-.+.+
T Consensus 649 vvs~shD 655 (888)
T KOG0306|consen 649 VVSSSHD 655 (888)
T ss_pred EEeccCC
Confidence 8766554
|
|
| >COG4947 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00027 Score=64.10 Aligned_cols=181 Identities=18% Similarity=0.217 Sum_probs=107.7
Q ss_pred CCCCCcEEEEEcCCC-CCCCCc-cchHHHHHHHHCCc-EEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHH
Q 003363 588 DCSCDPLIVVLHGGP-HSVSLS-SYSKSLAFLSSVGY-SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 664 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~-~~~~~~-~~~~~~~~la~~G~-~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 664 (826)
+....|+|||.-.++ +..... .....+..+.+.|. ..++++--- .++|... ..+ ....++--.+.-+|+++
T Consensus 23 GHaG~pVvvFpts~Grf~eyed~G~v~ala~fie~G~vQlft~~gld----sESf~a~-h~~-~adr~~rH~AyerYv~e 96 (227)
T COG4947 23 GHAGIPVVVFPTSGGRFNEYEDFGMVDALASFIEEGLVQLFTLSGLD----SESFLAT-HKN-AADRAERHRAYERYVIE 96 (227)
T ss_pred cCCCCcEEEEecCCCcchhhhhcccHHHHHHHHhcCcEEEEEecccc----hHhHhhh-cCC-HHHHHHHHHHHHHHHHH
Confidence 345678888886533 221111 11223334445664 445554322 1222111 111 01113334455678887
Q ss_pred cCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHH
Q 003363 665 MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLT 744 (826)
Q Consensus 665 ~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (826)
+.. +.+..+-|.||||+.++.+..++|++|..+|+.+++++...+++..--.+
T Consensus 97 Eal--pgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg~yyddD------------------------- 149 (227)
T COG4947 97 EAL--PGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFGGYYDDD------------------------- 149 (227)
T ss_pred hhc--CCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhccccccCc-------------------------
Confidence 742 35678899999999999999999999999999999999875543211111
Q ss_pred HHhhcCcccccCCCC----------CcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCC
Q 003363 745 RFHSKSPISHISKVK----------TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804 (826)
Q Consensus 745 ~~~~~sp~~~~~~i~----------~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 804 (826)
. ...+|..++..+. ..+.+..|..|+.. .+.+++.+.|.++.++..+.+..+..|..
T Consensus 150 v-~ynsP~dylpg~~dp~~l~rlr~~~~vfc~G~e~~~L--~~~~~L~~~l~dKqipaw~~~WggvaHdw 216 (227)
T COG4947 150 V-YYNSPSDYLPGLADPFRLERLRRIDMVFCIGDEDPFL--DNNQHLSRLLSDKQIPAWMHVWGGVAHDW 216 (227)
T ss_pred e-eecChhhhccCCcChHHHHHHhhccEEEEecCccccc--cchHHHHHHhccccccHHHHHhccccccc
Confidence 0 1134444433332 45778889988887 45567888888887777777776666643
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.13 Score=62.49 Aligned_cols=64 Identities=19% Similarity=0.254 Sum_probs=43.7
Q ss_pred ccEEEEeCCCCCeEEEEecCCC-CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEee
Q 003363 155 GASAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 227 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~-~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~ 227 (826)
+....+|-.||+++|..+-... +..+.+.+| ..|......+ .+.|- -..++|.|.|..||-+..
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE---~v~gL------e~~l~WrPsG~lIA~~q~ 276 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSE---PVDGL------EGALSWRPSGNLIASSQR 276 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccc---cCCCc------cCCccCCCCCCEEEEEEE
Confidence 4556889999999998775332 346788999 4554433322 22111 168899999999998865
|
|
| >PLN02733 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00047 Score=75.80 Aligned_cols=90 Identities=19% Similarity=0.230 Sum_probs=65.0
Q ss_pred CccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHH
Q 003363 607 LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT 686 (826)
Q Consensus 607 ~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~ 686 (826)
...|...++.|.+.||.+ ..|++| +|.+|+.. ......++++.+.++.+.+.. ...+|.|+||||||.++.
T Consensus 107 ~~~~~~li~~L~~~GY~~-~~dL~g---~gYDwR~~---~~~~~~~~~Lk~lIe~~~~~~--g~~kV~LVGHSMGGlva~ 177 (440)
T PLN02733 107 VYYFHDMIEQLIKWGYKE-GKTLFG---FGYDFRQS---NRLPETMDGLKKKLETVYKAS--GGKKVNIISHSMGGLLVK 177 (440)
T ss_pred HHHHHHHHHHHHHcCCcc-CCCccc---CCCCcccc---ccHHHHHHHHHHHHHHHHHHc--CCCCEEEEEECHhHHHHH
Confidence 346778899999999866 789998 66666532 111223567777777776652 346899999999999999
Q ss_pred HHHHhCCCc----eeEEEecCCc
Q 003363 687 HLIGQAPDK----FVAAAARNPL 705 (826)
Q Consensus 687 ~~a~~~p~~----~~a~v~~~p~ 705 (826)
.++..+|+. ++..|++++.
T Consensus 178 ~fl~~~p~~~~k~I~~~I~la~P 200 (440)
T PLN02733 178 CFMSLHSDVFEKYVNSWIAIAAP 200 (440)
T ss_pred HHHHHCCHhHHhHhccEEEECCC
Confidence 999888863 5667766653
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0038 Score=63.69 Aligned_cols=251 Identities=14% Similarity=0.120 Sum_probs=137.7
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCC--ceEec
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG--EVQAV 288 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g--~~~~l 288 (826)
..+.+.|+.-.++..+++.+.+ .|+...+........+..-.....|...+.-..+-..+-.+.+||.++- ..+.+
T Consensus 112 t~v~~hp~~~~v~~as~d~tik--v~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~ 189 (406)
T KOG0295|consen 112 TRVIFHPSEALVVSASEDATIK--VFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSL 189 (406)
T ss_pred eeeeeccCceEEEEecCCceEE--EEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHh
Confidence 4566778776555555665543 3443334444444555554555556554222222333344788887653 22333
Q ss_pred cCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceec
Q 003363 289 KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNL 367 (826)
Q Consensus 289 ~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~L 367 (826)
...+..+..+.|-|-|.. |+..+ |+..|..+++ ++|. ..++
T Consensus 190 --~gh~h~vS~V~f~P~gd~----ilS~s---------------rD~tik~We~-----------------~tg~cv~t~ 231 (406)
T KOG0295|consen 190 --IGHEHGVSSVFFLPLGDH----ILSCS---------------RDNTIKAWEC-----------------DTGYCVKTF 231 (406)
T ss_pred --cCcccceeeEEEEecCCe----eeecc---------------cccceeEEec-----------------ccceeEEec
Confidence 445567889999999987 87766 4457888888 5665 4567
Q ss_pred CCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCC
Q 003363 368 TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 447 (826)
Q Consensus 368 t~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~ 447 (826)
+.+...+...+.+-||..++--+++ .+|.+|-+.+++-+.+..+..-+++.+.-..+..++ ++.
T Consensus 232 ~~h~ewvr~v~v~~DGti~As~s~d-----------qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~-----~i~ 295 (406)
T KOG0295|consen 232 PGHSEWVRMVRVNQDGTIIASCSND-----------QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYP-----SIS 295 (406)
T ss_pred cCchHhEEEEEecCCeeEEEecCCC-----------ceEEEEEeccchhhhhhhccccceEEEEecccccCc-----chh
Confidence 7777778899999999877644433 456667666764333322322222222111111111 111
Q ss_pred CCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEE-ecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 448 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR-ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 448 ~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~-lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
...=+.||-.+++..+++....+| |+.+|...- |...+.-+....|+|.|++|+-.+ +..+ |.+.|+...
T Consensus 296 ~at~~~~~~~~l~s~SrDktIk~w--dv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca-DDkt---lrvwdl~~~ 366 (406)
T KOG0295|consen 296 EATGSTNGGQVLGSGSRDKTIKIW--DVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCA-DDKT---LRVWDLKNL 366 (406)
T ss_pred hccCCCCCccEEEeecccceEEEE--eccCCeEEEEEecccceeeeeEEcCCCeEEEEEe-cCCc---EEEEEeccc
Confidence 111123444566666555555555 666775432 222222355567888777655444 3333 555565544
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0042 Score=60.34 Aligned_cols=245 Identities=12% Similarity=0.054 Sum_probs=136.4
Q ss_pred cEEEEeCCCC-CeEEEEecC-C--CCCCeEEEEe-cCCceeEEE---ecCCCccccccCCCcccceeecCCCCeEEEEee
Q 003363 156 ASAVVPSPSG-SKLLVVRNP-E--NESPIQFELW-SQSQLEKEF---HVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 227 (826)
Q Consensus 156 ~~~~~~SPdG-~~la~~~~~-~--~~~~~~~~i~-~~~~~~~~~---~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~ 227 (826)
...+.|||== .+||..... - .|...++.+. +++...++. +...+. .+++||+.-..+++++.
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~L----------fdV~Wse~~e~~~~~a~ 80 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGL----------FDVAWSENHENQVIAAS 80 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccce----------eEeeecCCCcceEEEEe
Confidence 4556777721 244443321 1 2555677777 333333332 222233 68999999888888764
Q ss_pred cCCCCCCCccCCC-CCCCCCCccCCCCCCcceeecCCCccCC-CccCceEEEEEccCCceEeccCCCCCCccceEEEeeC
Q 003363 228 EPSPSKPTFSLGS-TKGGSSDKDCNSWKGQGDWEEDWGETYA-GKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 305 (826)
Q Consensus 228 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~g~~~~-~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPD 305 (826)
.... ...|+... ......+++++.-+....|.+.|++.+. ..=+..|.+|+..-++-..-. ......+-++.|||-
T Consensus 81 GDGS-Lrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~sp~ 158 (311)
T KOG0277|consen 81 GDGS-LRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFSPH 158 (311)
T ss_pred cCce-EEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee-cCCccEEEEEecCCC
Confidence 3321 12333111 1122334455555545555555544432 223467777776554432221 233446778999997
Q ss_pred CCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCE
Q 003363 306 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF 385 (826)
Q Consensus 306 g~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~ 385 (826)
-.. ++-.+. .++.+..+|+. ..|+...+..+...+....||.=...
T Consensus 159 ~~n----lfas~S--------------gd~~l~lwdvr----------------~~gk~~~i~ah~~Eil~cdw~ky~~~ 204 (311)
T KOG0277|consen 159 IPN----LFASAS--------------GDGTLRLWDVR----------------SPGKFMSIEAHNSEILCCDWSKYNHN 204 (311)
T ss_pred CCC----eEEEcc--------------CCceEEEEEec----------------CCCceeEEEeccceeEeecccccCCc
Confidence 665 544331 33355555653 34555556666667888999987777
Q ss_pred EEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC
Q 003363 386 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 465 (826)
Q Consensus 386 l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~ 465 (826)
++.+...+ +.|+.||+..=..- +..+ .| +...+..+.|||-...|+.+++.+
T Consensus 205 vl~Tg~vd----------~~vr~wDir~~r~p--------l~eL---------~g-h~~AVRkvk~Sph~~~lLaSasYD 256 (311)
T KOG0277|consen 205 VLATGGVD----------NLVRGWDIRNLRTP--------LFEL---------NG-HGLAVRKVKFSPHHASLLASASYD 256 (311)
T ss_pred EEEecCCC----------ceEEEEehhhcccc--------ceee---------cC-CceEEEEEecCcchhhHhhhcccc
Confidence 87777554 56888887652210 0000 00 122355778999888888888777
Q ss_pred CeEEEEEEE
Q 003363 466 SSQVIISVN 474 (826)
Q Consensus 466 ~~~~l~~vd 474 (826)
...+||...
T Consensus 257 mT~riw~~~ 265 (311)
T KOG0277|consen 257 MTVRIWDPE 265 (311)
T ss_pred ceEEecccc
Confidence 888888654
|
|
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.01 Score=66.52 Aligned_cols=127 Identities=16% Similarity=0.121 Sum_probs=78.3
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH---HHHHHHHCCcEEEEECCCCCCCCc----hhhh--hcCCC
Q 003363 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFG----EEAL--QSLPG 645 (826)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vl~~d~rG~~g~G----~~~~--~~~~~ 645 (826)
.+.-.+.+|.+.+ .. ++.+=||+... ...+.. .+..-..+||+++.-|- |+.+.. ..+. .....
T Consensus 16 ~i~fev~LP~~WN----gR-~~~~GgGG~~G-~i~~~~~~~~~~~~~~~G~A~~~TD~-Gh~~~~~~~~~~~~~n~~~~~ 88 (474)
T PF07519_consen 16 NIRFEVWLPDNWN----GR-FLQVGGGGFAG-GINYADGKASMATALARGYATASTDS-GHQGSAGSDDASFGNNPEALL 88 (474)
T ss_pred eEEEEEECChhhc----cC-eEEECCCeeeC-cccccccccccchhhhcCeEEEEecC-CCCCCcccccccccCCHHHHH
Confidence 5666677887432 12 34443443332 111111 13445688999999993 221111 1111 00112
Q ss_pred CCCcchHHHHHHHHHHHHHcC-CCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccch
Q 003363 646 KVGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708 (826)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~-~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~ 708 (826)
+++...+.+...+-+.|++.. .-.+++-...|.|-||-.++.+|.++|+.|.++++.+|..++
T Consensus 89 dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~~ 152 (474)
T PF07519_consen 89 DFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAINW 152 (474)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHHH
Confidence 233444556666667777653 356788999999999999999999999999999999996654
|
It also includes several bacterial homologues of unknown function. |
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0045 Score=62.12 Aligned_cols=199 Identities=16% Similarity=0.202 Sum_probs=100.6
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccC-CCCC--CC-CCCccCCCCC---C----cceee-------cCCCccCCCccC
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSL-GSTK--GG-SSDKDCNSWK---G----QGDWE-------EDWGETYAGKRQ 272 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~-~~~~--~~-~~~~~~~~~~---~----~~~~~-------~d~g~~~~~~~~ 272 (826)
.+..|||||.-|+..+++.......... .+.+ .. ...+.+..+. + ...|. |+----.+..+.
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 5788999999999988877543211111 0111 11 1111111111 1 12221 110111233345
Q ss_pred ceEEEEEccCCceEecc-CCCC--C-CccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccch
Q 003363 273 PSLFVININSGEVQAVK-GIPK--S-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 348 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~-~~~~--~-~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 348 (826)
.-|.+||.-+|+.+.-- .... + ....+++|||||.+ | |.+. ++ -|.+.|+..
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeq----l-faGy-------------kr--cirvFdt~R---- 188 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQ----L-FAGY-------------KR--CIRVFDTSR---- 188 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCe----E-eecc-------------cc--eEEEeeccC----
Confidence 66999999999887541 0111 1 13447899999997 6 4441 12 355555421
Q ss_pred hhhhhhhcCCCCCCc---ceecCC----CCccccCceecCCC-CEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcc
Q 003363 349 ASELELKESSSEDLP---VVNLTE----SISSAFFPRFSPDG-KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL 420 (826)
Q Consensus 349 ~~~~~~~~~~~~~~~---~~~Lt~----~~~~~~~p~~SpDG-~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~ 420 (826)
.+.. ...++. ..+-+...+|||-. +.+++.+.- .++-++.+...+...+.
T Consensus 189 -----------pGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~-----------q~~giy~~~~~~pl~ll 246 (406)
T KOG2919|consen 189 -----------PGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYG-----------QRVGIYNDDGRRPLQLL 246 (406)
T ss_pred -----------CCCCCcchhhhhcccccccceeeeeeccCCCCcceeeeccc-----------ceeeeEecCCCCceeee
Confidence 1111 112222 13345667888844 466655532 23344444565554443
Q ss_pred cceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECC
Q 003363 421 EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 476 (826)
Q Consensus 421 ~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~ 476 (826)
.+. ..++..+.|.+||..|+..+... ..|..+|+.
T Consensus 247 ggh-------------------~gGvThL~~~edGn~lfsGaRk~--dkIl~WDiR 281 (406)
T KOG2919|consen 247 GGH-------------------GGGVTHLQWCEDGNKLFSGARKD--DKILCWDIR 281 (406)
T ss_pred ccc-------------------CCCeeeEEeccCcCeecccccCC--CeEEEEeeh
Confidence 322 23667889999999887654333 345555654
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0088 Score=59.67 Aligned_cols=208 Identities=14% Similarity=0.157 Sum_probs=121.6
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCC-c-cceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENEN-S-VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~-~-~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (826)
+-.+-..+.|.....-|.+++++..+.+.++.+...+ + ..++.. ..+...+|.|.|.+|+...+-. +
T Consensus 171 H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~------~~vrsiSfHPsGefllvgTdHp-----~ 239 (430)
T KOG0640|consen 171 HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDT------EPVRSISFHPSGEFLLVGTDHP-----T 239 (430)
T ss_pred ccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhcc------ceeeeEeecCCCceEEEecCCC-----c
Confidence 3455667778877777777888888888887544321 1 122222 3488999999999998754432 2
Q ss_pred EEEecCCceeEEEe--cCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCccee
Q 003363 182 FELWSQSQLEKEFH--VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (826)
Q Consensus 182 ~~i~~~~~~~~~~~--~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (826)
..+++-...+-... -.....+.| ..+..|+.|+.-+..+
T Consensus 240 ~rlYdv~T~QcfvsanPd~qht~ai------~~V~Ys~t~~lYvTaS--------------------------------- 280 (430)
T KOG0640|consen 240 LRLYDVNTYQCFVSANPDDQHTGAI------TQVRYSSTGSLYVTAS--------------------------------- 280 (430)
T ss_pred eeEEeccceeEeeecCcccccccce------eEEEecCCccEEEEec---------------------------------
Confidence 33332211111111 122334444 7889999997433322
Q ss_pred ecCCCccCCCccCceEEEEEccCCc-eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceE
Q 003363 260 EEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (826)
Q Consensus 260 ~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~ 338 (826)
.++.|.+||--+++ ++.+....+...+.+..|+-|||+ |...+ .++.++
T Consensus 281 -----------kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ky----iLsSG---------------~DS~vk 330 (430)
T KOG0640|consen 281 -----------KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKY----ILSSG---------------KDSTVK 330 (430)
T ss_pred -----------cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeE----EeecC---------------Ccceee
Confidence 23678888865554 333322233446778999999998 87766 223455
Q ss_pred EEEcccccchhhhhhhhcCCCCCCccee-cCCC-----CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCC
Q 003363 339 AVRVSLYKSEASELELKESSSEDLPVVN-LTES-----ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 412 (826)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-Lt~~-----~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~ 412 (826)
++.+ .++...+ -|.. ........|.....+++|-.... ..|..||..
T Consensus 331 LWEi-----------------~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas----------~slcsWdaR 383 (430)
T KOG0640|consen 331 LWEI-----------------STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEAS----------NSLCSWDAR 383 (430)
T ss_pred eeee-----------------cCCceEEEEecCCcccchhhhhhhhhcCccceEEcccccc----------Cceeecccc
Confidence 5555 3333222 2211 11234566777777777766543 578899987
Q ss_pred CCCCCC
Q 003363 413 TNGNFS 418 (826)
Q Consensus 413 ~~~~~~ 418 (826)
++..+.
T Consensus 384 tadr~~ 389 (430)
T KOG0640|consen 384 TADRVA 389 (430)
T ss_pred chhhhh
Confidence 766543
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.028 Score=63.16 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=23.6
Q ss_pred ccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 372 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 372 ~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
.+.....+||||++++-.... ..++-++|+.+-.
T Consensus 321 KsPHGV~vSPDGkylyVankl----------S~tVSVIDv~k~k 354 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKL----------SPTVTVIDVRKLD 354 (635)
T ss_pred CCccceEECCCCCEEEEeCCC----------CCcEEEEEChhhh
Confidence 356778999999997644433 2568888887633
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.074 Score=64.61 Aligned_cols=112 Identities=12% Similarity=0.065 Sum_probs=62.4
Q ss_pred cccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccc
Q 003363 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 452 (826)
Q Consensus 373 ~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws 452 (826)
......|-.||+++|..+-.... +....|.+|+-++ .....+.. .+| --..++|-
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~-----~~~R~iRVy~ReG-~L~stSE~---------------v~g----Le~~l~Wr 265 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPET-----GSRRVIRVYSREG-ELQSTSEP---------------VDG----LEGALSWR 265 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCC-----CceeEEEEECCCc-eEEecccc---------------CCC----ccCCccCC
Confidence 34567799999999877764310 1135677777542 22111111 111 12478999
Q ss_pred cCCCEEEEEEEeCCeEEEEEEECCCCcEEEec----CCCCCeeeEEEeecCCEEEEEEeCC
Q 003363 453 SDGCTMLLSSIWGSSQVIISVNVSSGELLRIT----PAESNFSWSLLTLDGDNIIAVSSSP 509 (826)
Q Consensus 453 ~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt----~~~~~~~~~~~s~dg~~l~~~~s~~ 509 (826)
|.|..|..+....+...|..+..++-+-...+ .....+....|+.|+..|++...+.
T Consensus 266 PsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~ 326 (928)
T PF04762_consen 266 PSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR 326 (928)
T ss_pred CCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC
Confidence 99985554443345556666665543322222 2223455667888888777766433
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0019 Score=75.17 Aligned_cols=248 Identities=13% Similarity=0.186 Sum_probs=138.4
Q ss_pred cEEEEeCCCCCe---EEEEecCCCCCCeEEEEecC-----CceeEEEecCCCccccccCCCcccceeecCCCC-eEEEEe
Q 003363 156 ASAVVPSPSGSK---LLVVRNPENESPIQFELWSQ-----SQLEKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVA 226 (826)
Q Consensus 156 ~~~~~~SPdG~~---la~~~~~~~~~~~~~~i~~~-----~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~-~ia~~~ 226 (826)
-...+|++.|.. |+.. ..++| -+.+|+. +....++..-...+|.| .++.|+|... .||-.+
T Consensus 67 F~kL~W~~~g~~~~GlIaG-G~edG---~I~ly~p~~~~~~~~~~~la~~~~h~G~V------~gLDfN~~q~nlLASGa 136 (1049)
T KOG0307|consen 67 FNKLAWGSYGSHSHGLIAG-GLEDG---NIVLYDPASIIANASEEVLATKSKHTGPV------LGLDFNPFQGNLLASGA 136 (1049)
T ss_pred ceeeeecccCCCccceeec-cccCC---ceEEecchhhccCcchHHHhhhcccCCce------eeeeccccCCceeeccC
Confidence 345788888887 2222 11223 3445522 22222332234566777 8899999987 777766
Q ss_pred ecCCCCCCCccCCCCCCCCCCcc--CCCCCCcceeecCCCccC-CCccCceEEEEEccCCc-eEeccCCCCCCccceEEE
Q 003363 227 EEPSPSKPTFSLGSTKGGSSDKD--CNSWKGQGDWEEDWGETY-AGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVW 302 (826)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~g~~~-~~~~~~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~w 302 (826)
.++..- .|+..-......... ..+-+.-..|...--..+ ++.......+||+...+ +..+..+.+...+..++|
T Consensus 137 ~~geI~--iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~W 214 (1049)
T KOG0307|consen 137 DDGEIL--IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAW 214 (1049)
T ss_pred CCCcEE--EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeee
Confidence 665433 333211111100100 011111222332211112 22234578889997664 233322333345668999
Q ss_pred eeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCC
Q 003363 303 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPD 382 (826)
Q Consensus 303 SPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpD 382 (826)
.||.-. -+.++.+++ +..-|-.+|+.. .+...+.++.+...+.+..|++.
T Consensus 215 hP~~aT----ql~~As~dd-----------~~PviqlWDlR~---------------assP~k~~~~H~~GilslsWc~~ 264 (1049)
T KOG0307|consen 215 HPDHAT----QLLVASGDD-----------SAPVIQLWDLRF---------------ASSPLKILEGHQRGILSLSWCPQ 264 (1049)
T ss_pred CCCCce----eeeeecCCC-----------CCceeEeecccc---------------cCCchhhhcccccceeeeccCCC
Confidence 999987 555543322 333566777643 55667778888888999999999
Q ss_pred CCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEE
Q 003363 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 462 (826)
Q Consensus 383 G~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~ 462 (826)
+..++..+.++ +++..||..+++... -+....+ | ...+.|.|..-.++..+
T Consensus 265 D~~lllSsgkD----------~~ii~wN~~tgEvl~----------~~p~~~n------W---~fdv~w~pr~P~~~A~a 315 (1049)
T KOG0307|consen 265 DPRLLLSSGKD----------NRIICWNPNTGEVLG----------ELPAQGN------W---CFDVQWCPRNPSVMAAA 315 (1049)
T ss_pred CchhhhcccCC----------CCeeEecCCCceEee----------ecCCCCc------c---eeeeeecCCCcchhhhh
Confidence 98888888665 679999988866521 1111111 2 22556777655566666
Q ss_pred EeCCeEEEEEEE
Q 003363 463 IWGSSQVIISVN 474 (826)
Q Consensus 463 ~~~~~~~l~~vd 474 (826)
.-+|...||.+-
T Consensus 316 sfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 316 SFDGKISIYSLQ 327 (1049)
T ss_pred eeccceeeeeee
Confidence 667777777764
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0025 Score=65.09 Aligned_cols=144 Identities=18% Similarity=0.200 Sum_probs=91.5
Q ss_pred ceEEEEEccCCceE-eccCC-CCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 273 PSLFVININSGEVQ-AVKGI-PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 273 ~~l~v~d~~~g~~~-~l~~~-~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
.+||++|+.+-++- .+..+ +.....-.++.++++.+ |+|-+.. ...+++++|+.
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~y----lAyp~s~-------------t~GdV~l~d~~------- 161 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCY----LAYPGST-------------TSGDVVLFDTI------- 161 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCce----EEecCCC-------------CCceEEEEEcc-------
Confidence 46999999765532 22222 22223334444445556 8887522 24588999872
Q ss_pred hhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeee
Q 003363 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 430 (826)
.-.....+..+.+.....+|||||+.||-.|.+. .-|.++..+.|++.. +
T Consensus 162 ---------nl~~v~~I~aH~~~lAalafs~~G~llATASeKG----------TVIRVf~v~~G~kl~---------e-- 211 (391)
T KOG2110|consen 162 ---------NLQPVNTINAHKGPLAALAFSPDGTLLATASEKG----------TVIRVFSVPEGQKLY---------E-- 211 (391)
T ss_pred ---------cceeeeEEEecCCceeEEEECCCCCEEEEeccCc----------eEEEEEEcCCccEee---------e--
Confidence 2233455667788888999999999999888774 336667776655421 0
Q ss_pred eccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCC
Q 003363 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS 477 (826)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~t 477 (826)
--.|.++.++.+++|+||++.| ..++.....++|.++...
T Consensus 212 ------FRRG~~~~~IySL~Fs~ds~~L-~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 212 ------FRRGTYPVSIYSLSFSPDSQFL-AASSNTETVHIFKLEKVS 251 (391)
T ss_pred ------eeCCceeeEEEEEEECCCCCeE-EEecCCCeEEEEEecccc
Confidence 0112344567789999999855 444556788999987543
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.012 Score=68.23 Aligned_cols=92 Identities=21% Similarity=0.249 Sum_probs=62.2
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEE-EeecCcceeeeeeeeccCCCceEEEEcccccchhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF-VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf-~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (826)
..|.++|.++...+.+. +.....+-+|.|||||+. |+| ++.+.- .+...||+.++..
T Consensus 329 ~~L~~~D~dG~n~~~ve-~~~~~~i~sP~~SPDG~~----vAY~ts~e~~----------~g~s~vYv~~L~t------- 386 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVE-IEDTISVYHPDISPDGKK----VAFCTGIEGL----------PGKSSVYVRNLNA------- 386 (912)
T ss_pred CeEEEEecCCCCceEEE-ecCCCceecCcCCCCCCE----EEEEEeecCC----------CCCceEEEEehhc-------
Confidence 38999999998888762 345667788999999999 999 664331 1345799999942
Q ss_pred hhhhcCCCCCCcceecCCCCccccCceecCCCCE-EEEEeccCC
Q 003363 352 LELKESSSEDLPVVNLTESISSAFFPRFSPDGKF-LVFLSAKSS 394 (826)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~-l~f~s~~~~ 394 (826)
.+....+|.-....+-..+....|.. |+|++...+
T Consensus 387 --------~~~~~vkl~ve~aaiprwrv~e~gdt~ivyv~~a~n 422 (912)
T TIGR02171 387 --------SGSGLVKLPVENAAIPRWRVLENGDTVIVYVSDASN 422 (912)
T ss_pred --------cCCCceEeecccccccceEecCCCCeEEEEEcCCCC
Confidence 33445566555444444444677754 677776543
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.044 Score=64.25 Aligned_cols=164 Identities=13% Similarity=0.173 Sum_probs=88.1
Q ss_pred EEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCC---
Q 003363 99 WTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE--- 175 (826)
Q Consensus 99 ~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~--- 175 (826)
...+.+||||+.++|...... ....+|+..+. + .++... ..+....|||+|+.+++.....
T Consensus 62 ~~~~~~spdg~~~~~~~~~~~-----~~~~l~l~~~~--g----~~~~~~-----~~v~~~~~~~~g~~~~~~~~~~~~~ 125 (620)
T COG1506 62 VSELRWSPDGSVLAFVSTDGG-----RVAQLYLVDVG--G----LITKTA-----FGVSDARWSPDGDRIAFLTAEGASK 125 (620)
T ss_pred ccccccCCCCCEEEEEeccCC-----CcceEEEEecC--C----ceeeee-----cccccceeCCCCCeEEEEecccccc
Confidence 345556999999999873222 35567776643 1 222232 3578899999999999943211
Q ss_pred -CCC----CeEEEEe---cCCceeEEEecCCC-c-cccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCC
Q 003363 176 -NES----PIQFELW---SQSQLEKEFHVPQT-V-HGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGS 245 (826)
Q Consensus 176 -~~~----~~~~~i~---~~~~~~~~~~~~~~-~-~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~ 245 (826)
++. ..-+.+| .++....+..+... . .-.......+..++|.+|++.++.........
T Consensus 126 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 192 (620)
T COG1506 126 RDGGDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDAD------------- 192 (620)
T ss_pred cCCceeeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccC-------------
Confidence 111 0011222 12122222222111 0 00111112334556666667666654433100
Q ss_pred CCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCc
Q 003363 246 SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 321 (826)
Q Consensus 246 ~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~ 321 (826)
. .....+++...++++..+ +++......+.|.+||+. +++.+....
T Consensus 193 ----------------~--------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~gk~----~~~~~~~~~ 238 (620)
T COG1506 193 ----------------P--------WVTNLYVLIEGNGELESL--TPGEGSISKLAFDADGKS----IALLGTESD 238 (620)
T ss_pred ----------------C--------ceEeeEEEecCCCceEEE--cCCCceeeeeeeCCCCCe----eEEeccCCc
Confidence 0 112333333367788877 677777889999999998 888775443
|
|
| >KOG3975 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.027 Score=55.01 Aligned_cols=62 Identities=15% Similarity=0.028 Sum_probs=42.2
Q ss_pred CCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 003363 756 SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 756 ~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~ 821 (826)
++-.+-+-+..|..|..||.+....+.+.+++. ++++-. .+..|.|-...++ .+...+.+.|
T Consensus 239 een~d~l~Fyygt~DgW~p~~~~d~~kdd~~ee--d~~Lde-dki~HAFV~~~~q-~ma~~v~d~~ 300 (301)
T KOG3975|consen 239 EENLDSLWFYYGTNDGWVPSHYYDYYKDDVPEE--DLKLDE-DKIPHAFVVKHAQ-YMANAVFDMI 300 (301)
T ss_pred HhcCcEEEEEccCCCCCcchHHHHHHhhhcchh--ceeecc-ccCCcceeecccH-HHHHHHHHhh
Confidence 333467888999999999988877777777653 455555 6788988755544 4444454443
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.059 Score=52.39 Aligned_cols=230 Identities=13% Similarity=0.120 Sum_probs=119.6
Q ss_pred CCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecC--CCCeEEEEeecCCCCCCCccCCCC
Q 003363 164 SGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNS--DETLIAYVAEEPSPSKPTFSLGST 241 (826)
Q Consensus 164 dG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSP--Dg~~ia~~~~~~~~~~~~~~~~~~ 241 (826)
-|++||..+.+ +.-.+|.+...++...+..+ .+..|.| ..+.|.. -|..||..+-+
T Consensus 22 ygkrlATcsSD--~tVkIf~v~~n~~s~ll~~L-~Gh~GPV------wqv~wahPk~G~iLAScsYD------------- 79 (299)
T KOG1332|consen 22 YGKRLATCSSD--GTVKIFEVRNNGQSKLLAEL-TGHSGPV------WKVAWAHPKFGTILASCSYD------------- 79 (299)
T ss_pred hcceeeeecCC--ccEEEEEEcCCCCceeeeEe-cCCCCCe------eEEeecccccCcEeeEeecC-------------
Confidence 47888876553 33345555544443444444 3444544 5666766 57777765433
Q ss_pred CCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEecc-CCCCCCccceEEEeeCCCCCccEEEEEeecC
Q 003363 242 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSS 320 (826)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~ 320 (826)
..+.+|.-++|.-.++. -...+.++.+++|.|.+-. +...+-.
T Consensus 80 -------------------------------gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheyg----l~Lacas- 123 (299)
T KOG1332|consen 80 -------------------------------GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYG----LLLACAS- 123 (299)
T ss_pred -------------------------------ceEEEEecCCCchhhhhhhhhhcccceeecccccccc----eEEEEee-
Confidence 45777887777554441 1233557889999998887 6554321
Q ss_pred cceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCC--cceecCCCCccccCceecCC---CC-----------
Q 003363 321 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PVVNLTESISSAFFPRFSPD---GK----------- 384 (826)
Q Consensus 321 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~Lt~~~~~~~~p~~SpD---G~----------- 384 (826)
.+..|-+++.+. +++ ..+....+...+.+..|.|- |.
T Consensus 124 ------------SDG~vsvl~~~~---------------~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~k 176 (299)
T KOG1332|consen 124 ------------SDGKVSVLTYDS---------------SGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVK 176 (299)
T ss_pred ------------CCCcEEEEEEcC---------------CCCccchhhhhccccccceeeecCcCCCccccccCcccccc
Confidence 222444444421 211 12233345556778888876 52
Q ss_pred EEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCC---CEEEEE
Q 003363 385 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG---CTMLLS 461 (826)
Q Consensus 385 ~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg---~~l~~~ 461 (826)
+|+-.. ..+.+.+|+.+.+.-.. +..+.+ +..-+..++|.|.- +.-+.+
T Consensus 177 rlvSgG-----------cDn~VkiW~~~~~~w~~----------------e~~l~~-H~dwVRDVAwaP~~gl~~s~iAS 228 (299)
T KOG1332|consen 177 RLVSGG-----------CDNLVKIWKFDSDSWKL----------------ERTLEG-HKDWVRDVAWAPSVGLPKSTIAS 228 (299)
T ss_pred eeeccC-----------CccceeeeecCCcchhh----------------hhhhhh-cchhhhhhhhccccCCCceeeEE
Confidence 222111 11223334333321100 001111 22345678888853 344455
Q ss_pred EEeCCeEEEEEEECCCCcEE--EecCCCCCeeeEEEeecCCEEEEEE
Q 003363 462 SIWGSSQVIISVNVSSGELL--RITPAESNFSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 462 ~~~~~~~~l~~vdl~tg~~~--~lt~~~~~~~~~~~s~dg~~l~~~~ 506 (826)
.+.+++..||..+.+.++.+ .|..-........||+.|+.|.+..
T Consensus 229 ~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 229 CSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSG 275 (299)
T ss_pred ecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEec
Confidence 56678888999885544433 2222222344457888887554443
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.007 Score=64.68 Aligned_cols=95 Identities=13% Similarity=0.222 Sum_probs=66.9
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (826)
.+-+|||||.-|+.+.++ +.|.+|.. +|-.+..-
T Consensus 108 ~~gRW~~dGtgLlt~GED--------------------------------------------G~iKiWSr-sGMLRStl- 141 (737)
T KOG1524|consen 108 SSGRWSPDGAGLLTAGED--------------------------------------------GVIKIWSR-SGMLRSTV- 141 (737)
T ss_pred hhcccCCCCceeeeecCC--------------------------------------------ceEEEEec-cchHHHHH-
Confidence 677899999999887655 45666764 55544321
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC
Q 003363 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 370 (826)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 370 (826)
......+..++|.|++.. ++|..- .++++-.+. ....+.+-..+
T Consensus 142 ~Q~~~~v~c~~W~p~S~~----vl~c~g----------------~h~~IKpL~----------------~n~k~i~WkAH 185 (737)
T KOG1524|consen 142 VQNEESIRCARWAPNSNS----IVFCQG----------------GHISIKPLA----------------ANSKIIRWRAH 185 (737)
T ss_pred hhcCceeEEEEECCCCCc----eEEecC----------------CeEEEeecc----------------cccceeEEecc
Confidence 233446778999999999 999761 166666662 33445555667
Q ss_pred CccccCceecCCCCEEE
Q 003363 371 ISSAFFPRFSPDGKFLV 387 (826)
Q Consensus 371 ~~~~~~p~~SpDG~~l~ 387 (826)
.+-+....||+....|+
T Consensus 186 DGiiL~~~W~~~s~lI~ 202 (737)
T KOG1524|consen 186 DGLVLSLSWSTQSNIIA 202 (737)
T ss_pred CcEEEEeecCcccccee
Confidence 78888999999988776
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.014 Score=60.92 Aligned_cols=186 Identities=12% Similarity=0.117 Sum_probs=111.1
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec---CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS---QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
.+......|.|+|++..++++ .|-..+ +....++.+-...+ .+....|.|||-.+...+.+.
T Consensus 305 ~V~~ls~h~tgeYllsAs~d~-----~w~Fsd~~~g~~lt~vs~~~s~v--------~~ts~~fHpDgLifgtgt~d~-- 369 (506)
T KOG0289|consen 305 PVTGLSLHPTGEYLLSASNDG-----TWAFSDISSGSQLTVVSDETSDV--------EYTSAAFHPDGLIFGTGTPDG-- 369 (506)
T ss_pred cceeeeeccCCcEEEEecCCc-----eEEEEEccCCcEEEEEeeccccc--------eeEEeeEcCCceEEeccCCCc--
Confidence 367888899999999887654 454442 33333333321112 236889999994443333333
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc-eEeccCCCCCCccceEEEeeCCCCCc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
....|+.........++.+..-+....|++++=...+...+..+++||+..-+ .+.+. .+....+..+.|-+.|+.
T Consensus 370 ~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~-l~~~~~v~s~~fD~SGt~-- 446 (506)
T KOG0289|consen 370 VVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ-LDEKKEVNSLSFDQSGTY-- 446 (506)
T ss_pred eEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee-ccccccceeEEEcCCCCe--
Confidence 33455544444455666677777778888884333334445569999985432 22221 233346778999999998
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCC---cceecCCCCccccCceecCCCCEEE
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL---PVVNLTESISSAFFPRFSPDGKFLV 387 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~Lt~~~~~~~~p~~SpDG~~l~ 387 (826)
|+..+ ..-.||.++- .+. +...+..+.+.....+|-.+-++|+
T Consensus 447 --L~~~g---------------~~l~Vy~~~k-----------------~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~ 492 (506)
T KOG0289|consen 447 --LGIAG---------------SDLQVYICKK-----------------KTKSWTEIKELADHSGLSTGVRFGEHAQYLA 492 (506)
T ss_pred --EEeec---------------ceeEEEEEec-----------------ccccceeeehhhhcccccceeeecccceEEe
Confidence 87765 1125666653 222 3344455555667788888888777
Q ss_pred EEecc
Q 003363 388 FLSAK 392 (826)
Q Consensus 388 f~s~~ 392 (826)
-.+++
T Consensus 493 s~smd 497 (506)
T KOG0289|consen 493 STSMD 497 (506)
T ss_pred eccch
Confidence 66655
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.076 Score=65.77 Aligned_cols=85 Identities=11% Similarity=0.149 Sum_probs=44.8
Q ss_pred cCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCC-CCcccccCCCCCCcccc
Q 003363 375 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD-CFPGLYSSSILSNPWLS 453 (826)
Q Consensus 375 ~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~f~g~~~~~~~~~~ws~ 453 (826)
....+++||+ +|++... ...|.++|..++....+..... . .. .++ ...+.+ .....+++++
T Consensus 807 ~Gvavd~dG~--LYVADs~---------N~rIrviD~~tg~v~tiaG~G~--~---G~-~dG~~~~a~l-~~P~GIavd~ 868 (1057)
T PLN02919 807 LGVLCAKDGQ--IYVADSY---------NHKIKKLDPATKRVTTLAGTGK--A---GF-KDGKALKAQL-SEPAGLALGE 868 (1057)
T ss_pred ceeeEeCCCc--EEEEECC---------CCEEEEEECCCCeEEEEeccCC--c---CC-CCCccccccc-CCceEEEEeC
Confidence 4567899997 3454432 3679999987754322111000 0 00 000 000000 1234668889
Q ss_pred CCCEEEEEEEeCCeEEEEEEECCCCcE
Q 003363 454 DGCTMLLSSIWGSSQVIISVNVSSGEL 480 (826)
Q Consensus 454 Dg~~l~~~~~~~~~~~l~~vdl~tg~~ 480 (826)
||+ ||++. .++..|..+|+.+++.
T Consensus 869 dG~-lyVaD--t~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 869 NGR-LFVAD--TNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCC-EEEEE--CCCCEEEEEECCCCcc
Confidence 997 65543 3445677788888765
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.022 Score=63.07 Aligned_cols=112 Identities=21% Similarity=0.280 Sum_probs=73.2
Q ss_pred cccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCC-ceEe
Q 003363 209 WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG-EVQA 287 (826)
Q Consensus 209 ~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g-~~~~ 287 (826)
.+..+..||+|+.||....... +....|++|+..+= ++..
T Consensus 527 Ev~~l~~s~~gnliASaCKS~~---------------------------------------~ehAvI~lw~t~~W~~~~~ 567 (764)
T KOG1063|consen 527 EVYALAISPTGNLIASACKSSL---------------------------------------KEHAVIRLWNTANWLQVQE 567 (764)
T ss_pred eEEEEEecCCCCEEeehhhhCC---------------------------------------ccceEEEEEeccchhhhhe
Confidence 4567889999998887654331 13467999997663 3444
Q ss_pred ccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceec
Q 003363 288 VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL 367 (826)
Q Consensus 288 l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L 367 (826)
| ...++.+.++.|||||+. |+-++. +|.-.||..--+. . ..-....+
T Consensus 568 L--~~HsLTVT~l~FSpdg~~----LLsvsR-------------DRt~sl~~~~~~~---~-----------~e~~fa~~ 614 (764)
T KOG1063|consen 568 L--EGHSLTVTRLAFSPDGRY----LLSVSR-------------DRTVSLYEVQEDI---K-----------DEFRFACL 614 (764)
T ss_pred e--cccceEEEEEEECCCCcE----EEEeec-------------CceEEeeeeeccc---c-----------hhhhhccc
Confidence 6 567789999999999999 988873 2323455442100 0 01112235
Q ss_pred CCCCccccCceecCCCCEEEEEecc
Q 003363 368 TESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 368 t~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
..+..-+....|+||+++++..|.+
T Consensus 615 k~HtRIIWdcsW~pde~~FaTaSRD 639 (764)
T KOG1063|consen 615 KAHTRIIWDCSWSPDEKYFATASRD 639 (764)
T ss_pred cccceEEEEcccCcccceeEEecCC
Confidence 5566667889999999996655544
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.061 Score=51.94 Aligned_cols=198 Identities=15% Similarity=0.105 Sum_probs=121.7
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
+.+..+.+.-||++.+.. ++...+.+|+ .|...+..... +. ++....-|.|..+++--..++.
T Consensus 18 gaV~avryN~dGnY~ltc-----GsdrtvrLWNp~rg~liktYsgh-G~--------EVlD~~~s~Dnskf~s~GgDk~- 82 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTC-----GSDRTVRLWNPLRGALIKTYSGH-GH--------EVLDAALSSDNSKFASCGGDKA- 82 (307)
T ss_pred cceEEEEEccCCCEEEEc-----CCCceEEeecccccceeeeecCC-Cc--------eeeeccccccccccccCCCCce-
Confidence 358899999999999876 3445788994 34443332211 11 1257778888888876544432
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCC-CccceEEEeeCCCCCc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLH 310 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg~~~~ 310 (826)
...|+...++....+..+..-++...|.++-.-.+++.-+..+-+||-.+..++++.-.... -.+.++.. .+..
T Consensus 83 -v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~he-- 157 (307)
T KOG0316|consen 83 -VQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHE-- 157 (307)
T ss_pred -EEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccE--
Confidence 23566666777777777777777788887755556666778899999876655444201111 12222222 2333
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC--CccccCceecCCCCEEEE
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVF 388 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~--~~~~~~p~~SpDG~~l~f 388 (826)
|+-.+ -+..+..+|+ ..| +++.. ...+.+..||+||+.++-
T Consensus 158 --IvaGS---------------~DGtvRtydi-----------------R~G---~l~sDy~g~pit~vs~s~d~nc~La 200 (307)
T KOG0316|consen 158 --IVAGS---------------VDGTVRTYDI-----------------RKG---TLSSDYFGHPITSVSFSKDGNCSLA 200 (307)
T ss_pred --EEeec---------------cCCcEEEEEe-----------------ecc---eeehhhcCCcceeEEecCCCCEEEE
Confidence 44443 2235667776 222 23222 234778999999998776
Q ss_pred EeccCCCCCCCCcccceEEEEeCCCCCCCCc
Q 003363 389 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 419 (826)
Q Consensus 389 ~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~ 419 (826)
.+.+ ..|+++|-.+|+....
T Consensus 201 ~~l~-----------stlrLlDk~tGklL~s 220 (307)
T KOG0316|consen 201 SSLD-----------STLRLLDKETGKLLKS 220 (307)
T ss_pred eecc-----------ceeeecccchhHHHHH
Confidence 6654 4589999888776443
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.012 Score=61.74 Aligned_cols=77 Identities=17% Similarity=0.097 Sum_probs=43.8
Q ss_pred cCceecCCCCEEEEEecc---CCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCcc
Q 003363 375 FFPRFSPDGKFLVFLSAK---SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 451 (826)
Q Consensus 375 ~~p~~SpDG~~l~f~s~~---~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~w 451 (826)
...+..|||. ++|..+. ... ........||++|..++..+.+.... ...+.++|
T Consensus 114 ND~~v~pdG~-~wfgt~~~~~~~~--~~~~~~G~lyr~~p~g~~~~l~~~~~--------------------~~~NGla~ 170 (307)
T COG3386 114 NDGVVDPDGR-IWFGDMGYFDLGK--SEERPTGSLYRVDPDGGVVRLLDDDL--------------------TIPNGLAF 170 (307)
T ss_pred CceeEcCCCC-EEEeCCCccccCc--cccCCcceEEEEcCCCCEEEeecCcE--------------------EecCceEE
Confidence 4567789987 5677665 111 11122347999986433322221111 02358899
Q ss_pred ccCCCEEEEEEEeCCeEEEEEEECC
Q 003363 452 LSDGCTMLLSSIWGSSQVIISVNVS 476 (826)
Q Consensus 452 s~Dg~~l~~~~~~~~~~~l~~vdl~ 476 (826)
||||+++|++-+. ...|++++++
T Consensus 171 SpDg~tly~aDT~--~~~i~r~~~d 193 (307)
T COG3386 171 SPDGKTLYVADTP--ANRIHRYDLD 193 (307)
T ss_pred CCCCCEEEEEeCC--CCeEEEEecC
Confidence 9999999887433 3456666554
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00079 Score=46.56 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=18.8
Q ss_pred cccEEEEeCCCCCeEEEEecCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPE 175 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~ 175 (826)
.....|+|||||++|+|+++..
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT
T ss_pred ccccCEEEecCCCEEEEEecCC
Confidence 4688999999999999999876
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.029 Score=58.01 Aligned_cols=217 Identities=10% Similarity=0.057 Sum_probs=115.8
Q ss_pred cCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEE
Q 003363 91 NISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLV 170 (826)
Q Consensus 91 ~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~ 170 (826)
.|+-....|=...-.-+.+.|++.+.... .+-..+.++...|.-..+. ..+....+.+....|+|-...++-
T Consensus 27 dIrVs~~tWDS~fcavNPkfiAvi~easg------Ggaf~ViPl~k~Gr~d~~~--P~v~GHt~~vLDi~w~PfnD~vIA 98 (472)
T KOG0303|consen 27 DIRVSRVTWDSSFCAVNPKFVAVIIEASG------GGAFLVIPLVKTGRMDASY--PLVCGHTAPVLDIDWCPFNDCVIA 98 (472)
T ss_pred ceeeeeeeccccccccCCceEEEEEecCC------CcceeecccccccccCCCC--CCccCccccccccccCccCCceee
Confidence 33333333333333446677777765432 2233344443333111110 111112245888999998876643
Q ss_pred EecCCCCCCeEEEEecCCceeEEE----ecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCC
Q 003363 171 VRNPENESPIQFELWSQSQLEKEF----HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSS 246 (826)
Q Consensus 171 ~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~ 246 (826)
+..++....+|.|..++-.+.++ .+ .+..-.| +-+.|.|--..+++.+.
T Consensus 99 -SgSeD~~v~vW~IPe~~l~~~ltepvv~L-~gH~rrV------g~V~wHPtA~NVLlsag------------------- 151 (472)
T KOG0303|consen 99 -SGSEDTKVMVWQIPENGLTRDLTEPVVEL-YGHQRRV------GLVQWHPTAPNVLLSAG------------------- 151 (472)
T ss_pred -cCCCCceEEEEECCCcccccCcccceEEE-eecceeE------EEEeecccchhhHhhcc-------------------
Confidence 22222333455555554333322 12 1222222 67889987665555432
Q ss_pred CccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeee
Q 003363 247 DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLG 326 (826)
Q Consensus 247 ~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g 326 (826)
..+.+.+||+.+|+.-.- ......+.+++|+-||.. |+-++
T Consensus 152 ------------------------~Dn~v~iWnv~tgeali~--l~hpd~i~S~sfn~dGs~----l~Ttc--------- 192 (472)
T KOG0303|consen 152 ------------------------SDNTVSIWNVGTGEALIT--LDHPDMVYSMSFNRDGSL----LCTTC--------- 192 (472)
T ss_pred ------------------------CCceEEEEeccCCceeee--cCCCCeEEEEEeccCCce----eeeec---------
Confidence 458899999999985432 335556789999999998 77766
Q ss_pred eeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceec-CCCCc-cccCceecCCCCEEEEEeccCCCCCCCCcccc
Q 003363 327 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESIS-SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 404 (826)
Q Consensus 327 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-t~~~~-~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~ 404 (826)
++..|.++|. ..+++..- -.+.+ ......|-.+|+ |+.+.-.. .+..
T Consensus 193 ------kDKkvRv~dp-----------------r~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr-------~seR 241 (472)
T KOG0303|consen 193 ------KDKKVRVIDP-----------------RRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSR-------MSER 241 (472)
T ss_pred ------ccceeEEEcC-----------------CCCcEeeecccccCCCcceeEEeccCc-eeeecccc-------cccc
Confidence 3346888886 44443322 22333 355677889998 43332221 2334
Q ss_pred eEEEEeCC
Q 003363 405 SLHRIDWP 412 (826)
Q Consensus 405 ~l~~~d~~ 412 (826)
++-+||..
T Consensus 242 q~aLwdp~ 249 (472)
T KOG0303|consen 242 QIALWDPN 249 (472)
T ss_pred ceeccCcc
Confidence 56667643
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.025 Score=60.06 Aligned_cols=210 Identities=12% Similarity=0.079 Sum_probs=126.7
Q ss_pred ceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccc
Q 003363 125 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSV 204 (826)
Q Consensus 125 ~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v 204 (826)
...-+.++++ +...-.+++..+. ..+....|+|++.+++....++ .+..+|+-.+..-.+++. +..+-|
T Consensus 88 ~sG~V~vfD~-k~r~iLR~~~ah~-----apv~~~~f~~~d~t~l~s~sDd----~v~k~~d~s~a~v~~~l~-~htDYV 156 (487)
T KOG0310|consen 88 ESGHVKVFDM-KSRVILRQLYAHQ-----APVHVTKFSPQDNTMLVSGSDD----KVVKYWDLSTAYVQAELS-GHTDYV 156 (487)
T ss_pred CcCcEEEecc-ccHHHHHHHhhcc-----CceeEEEecccCCeEEEecCCC----ceEEEEEcCCcEEEEEec-CCccee
Confidence 3444555553 1211234444444 3377789999999887654433 355566322222133332 222222
Q ss_pred cCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc
Q 003363 205 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE 284 (826)
Q Consensus 205 ~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~ 284 (826)
.+.+|+|-..+|++... -+..|.+||+.+..
T Consensus 157 ------R~g~~~~~~~hivvtGs-------------------------------------------YDg~vrl~DtR~~~ 187 (487)
T KOG0310|consen 157 ------RCGDISPANDHIVVTGS-------------------------------------------YDGKVRLWDTRSLT 187 (487)
T ss_pred ------EeeccccCCCeEEEecC-------------------------------------------CCceEEEEEeccCC
Confidence 78899999988888622 23568889987654
Q ss_pred eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc
Q 003363 285 VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV 364 (826)
Q Consensus 285 ~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 364 (826)
.+.+. .+.+..+..+.+-|.|.. |+..+ .+.+.+||+- .+++.
T Consensus 188 ~~v~e-lnhg~pVe~vl~lpsgs~----iasAg----------------Gn~vkVWDl~----------------~G~ql 230 (487)
T KOG0310|consen 188 SRVVE-LNHGCPVESVLALPSGSL----IASAG----------------GNSVKVWDLT----------------TGGQL 230 (487)
T ss_pred ceeEE-ecCCCceeeEEEcCCCCE----EEEcC----------------CCeEEEEEec----------------CCcee
Confidence 33332 566778889999999997 76655 1268889982 24443
Q ss_pred -eecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCccccc
Q 003363 365 -VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 443 (826)
Q Consensus 365 -~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~ 443 (826)
....++.-.+++.++..||+.|+-.+-+ .++.++|... ..++.-|. |.
T Consensus 231 l~~~~~H~KtVTcL~l~s~~~rLlS~sLD-----------~~VKVfd~t~----------~Kvv~s~~----------~~ 279 (487)
T KOG0310|consen 231 LTSMFNHNKTVTCLRLASDSTRLLSGSLD-----------RHVKVFDTTN----------YKVVHSWK----------YP 279 (487)
T ss_pred hhhhhcccceEEEEEeecCCceEeecccc-----------cceEEEEccc----------eEEEEeee----------cc
Confidence 2333466778899999999998866655 2466666322 11333222 22
Q ss_pred CCCCCCccccCCCEEEEEE
Q 003363 444 SSILSNPWLSDGCTMLLSS 462 (826)
Q Consensus 444 ~~~~~~~ws~Dg~~l~~~~ 462 (826)
..+.+++.+||++++++..
T Consensus 280 ~pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 280 GPVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred cceeeEEecCCCceEEEec
Confidence 2566778899999887754
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.028 Score=54.12 Aligned_cols=202 Identities=13% Similarity=0.077 Sum_probs=111.1
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (826)
..+++.-||++.+....+.+.+ .|+...+...+....+..-+-..+-+-|-....+..++..+++||+++|++.+-.
T Consensus 21 ~avryN~dGnY~ltcGsdrtvr--LWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~- 97 (307)
T KOG0316|consen 21 RAVRYNVDGNYCLTCGSDRTVR--LWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF- 97 (307)
T ss_pred EEEEEccCCCEEEEcCCCceEE--eecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec-
Confidence 7888999999887766666544 3443333333333322221212222222223334456789999999999875431
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceec-CC
Q 003363 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TE 369 (826)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-t~ 369 (826)
-.....+..+.|..+.. +++.+. .++.+..+|... ..-++.++ .+
T Consensus 98 rgH~aqVNtV~fNeesS-----Vv~Sgs--------------fD~s~r~wDCRS---------------~s~ePiQilde 143 (307)
T KOG0316|consen 98 RGHLAQVNTVRFNEESS-----VVASGS--------------FDSSVRLWDCRS---------------RSFEPIQILDE 143 (307)
T ss_pred ccccceeeEEEecCcce-----EEEecc--------------ccceeEEEEccc---------------CCCCccchhhh
Confidence 23344677889988777 666551 334677777632 22333333 33
Q ss_pred CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCC
Q 003363 370 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 449 (826)
Q Consensus 370 ~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 449 (826)
....+.+...+ +..|+-.|.+ ..+..+|+.-|.... +. ....+...
T Consensus 144 a~D~V~Si~v~--~heIvaGS~D-----------GtvRtydiR~G~l~s---Dy------------------~g~pit~v 189 (307)
T KOG0316|consen 144 AKDGVSSIDVA--EHEIVAGSVD-----------GTVRTYDIRKGTLSS---DY------------------FGHPITSV 189 (307)
T ss_pred hcCceeEEEec--ccEEEeeccC-----------CcEEEEEeecceeeh---hh------------------cCCcceeE
Confidence 33345555543 2345444433 346777766554311 00 11234577
Q ss_pred ccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC
Q 003363 450 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA 486 (826)
Q Consensus 450 ~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~ 486 (826)
+||+||+-.+..+- +..|.++|-.||++...-.+
T Consensus 190 s~s~d~nc~La~~l---~stlrLlDk~tGklL~sYkG 223 (307)
T KOG0316|consen 190 SFSKDGNCSLASSL---DSTLRLLDKETGKLLKSYKG 223 (307)
T ss_pred EecCCCCEEEEeec---cceeeecccchhHHHHHhcc
Confidence 89999996655432 34567778888886554333
|
|
| >KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00091 Score=71.08 Aligned_cols=126 Identities=23% Similarity=0.218 Sum_probs=80.4
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH-HHHHHHH-CCcEEEEECCCCCCCCchhh---hhcCCCCCCcc
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLSS-VGYSLLIVNYRGSLGFGEEA---LQSLPGKVGSQ 650 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~-~~~~la~-~G~~Vl~~d~rG~~g~G~~~---~~~~~~~~~~~ 650 (826)
+...++.|. . ...+.-++|+++||++-.+...... ....|+. ...+|+.+|||-. .+|-=. ....|+++|
T Consensus 121 LYlNVW~P~-~-~p~n~tVlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRvG-~FGFL~l~~~~eaPGNmG-- 195 (601)
T KOG4389|consen 121 LYLNVWAPA-A-DPYNLTVLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRVG-AFGFLYLPGHPEAPGNMG-- 195 (601)
T ss_pred eEEEEeccC-C-CCCCceEEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeeec-cceEEecCCCCCCCCccc--
Confidence 444566663 1 1223349999999887655544332 2345544 4578899999953 244322 223455544
Q ss_pred hHHHHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHh--CCCceeEEEecCCccc
Q 003363 651 DVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCN 707 (826)
Q Consensus 651 ~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~~~ 707 (826)
+-|..-|++|+.++ ..-|+++|.|+|.|+|+.-+..-+.. ...+|+.+|+.+|..+
T Consensus 196 -l~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 196 -LLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred -hHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCC
Confidence 77889999999886 33689999999999999766433322 1147888888887554
|
|
| >PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0038 Score=63.06 Aligned_cols=112 Identities=9% Similarity=0.164 Sum_probs=65.7
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCc--EEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY--SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~--~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (826)
....++||+||..... .......++.....|| .++.+.++..+.. ..+. ...........++...++.|.+.
T Consensus 16 ~~~~vlvfVHGyn~~f-~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~-~~Y~--~d~~~a~~s~~~l~~~L~~L~~~-- 89 (233)
T PF05990_consen 16 PDKEVLVFVHGYNNSF-EDALRRAAQLAHDLGFPGVVILFSWPSDGSL-LGYF--YDRESARFSGPALARFLRDLARA-- 89 (233)
T ss_pred CCCeEEEEEeCCCCCH-HHHHHHHHHHHHHhCCCceEEEEEcCCCCCh-hhhh--hhhhhHHHHHHHHHHHHHHHHhc--
Confidence 4568999999954331 2233334444445555 7888888864321 1110 01111112344556666666555
Q ss_pred CCCCcEEEEEecchHHHHHHHHHhC----C-----CceeEEEecCCccc
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQA----P-----DKFVAAAARNPLCN 707 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~~----p-----~~~~a~v~~~p~~~ 707 (826)
....+|.|++||||+.+.+.++... . .+|..+++.+|-++
T Consensus 90 ~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid 138 (233)
T PF05990_consen 90 PGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDID 138 (233)
T ss_pred cCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCC
Confidence 2458999999999999998876532 1 24666777777554
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.049 Score=54.10 Aligned_cols=239 Identities=13% Similarity=0.184 Sum_probs=136.2
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEe-cCCCC-----C
Q 003363 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVR-NPENE-----S 178 (826)
Q Consensus 105 s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~-~~~~~-----~ 178 (826)
..|...+.|-+...++... .++-+..++.+++... ...|-...+.+...+-||-.++|+-.- ++.++ .
T Consensus 21 tad~d~icFlvgTnslK~d---NqVhll~~d~e~s~l~---skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~ 94 (370)
T KOG1007|consen 21 TADRDHICFLVGTNSLKED---NQVHLLRLDSEGSELL---SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTG 94 (370)
T ss_pred ccCccceEEEEeccccCCc---ceeEEEEecCccchhh---hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceee
Confidence 3456667787766665443 4455555544444321 111211124577777788777765433 32222 2
Q ss_pred CeEEEEe-cCCc-----eeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCC-CC-----C
Q 003363 179 PIQFELW-SQSQ-----LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKG-GS-----S 246 (826)
Q Consensus 179 ~~~~~i~-~~~~-----~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~-~~-----~ 246 (826)
..+|.|. .-+. .+.+..++...+|+| ..+.|-|++.+|+...+.. .-.|.....+. .. .
T Consensus 95 aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i------~cvew~Pns~klasm~dn~---i~l~~l~ess~~vaev~ss~ 165 (370)
T KOG1007|consen 95 AAIWQIPEPLGQSNSSTLECVASLDTEAVGKI------NCVEWEPNSDKLASMDDNN---IVLWSLDESSKIVAEVLSSE 165 (370)
T ss_pred EEEEecccccCccccchhhHhhcCCHHHhCce------eeEEEcCCCCeeEEeccCc---eEEEEcccCcchheeecccc
Confidence 2355555 2222 233334454556666 8999999999999876433 11232222221 10 0
Q ss_pred CccCCCCCCcceeec-CCCccCCCccCceEEEEEccCCceE-eccCCCCCCccceEEEeeCCCCCccEEEEEeecCccee
Q 003363 247 DKDCNSWKGQGDWEE-DWGETYAGKRQPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK 324 (826)
Q Consensus 247 ~~~~~~~~~~~~~~~-d~g~~~~~~~~~~l~v~d~~~g~~~-~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~ 324 (826)
..+...-...+.|+| .-|.++.......|.-||+.+-+.. .+. -.....+.++.|.|+-+. ++.++.
T Consensus 166 s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~-dAHgq~vrdlDfNpnkq~----~lvt~g------ 234 (370)
T KOG1007|consen 166 SAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIE-DAHGQRVRDLDFNPNKQH----ILVTCG------ 234 (370)
T ss_pred cccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchh-hhhcceeeeccCCCCceE----EEEEcC------
Confidence 111222233667887 4477777777889999998764322 121 112234678889998776 666552
Q ss_pred eeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 325 LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 325 ~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
.++.|.++|... ....+..|.++...+...+|.|--.+|+.....
T Consensus 235 --------DdgyvriWD~R~---------------tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S 279 (370)
T KOG1007|consen 235 --------DDGYVRIWDTRK---------------TKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS 279 (370)
T ss_pred --------CCccEEEEeccC---------------CCccccccCCCceEEEEEEecCccceEEEecCC
Confidence 233577777632 344567788888889999999988888766644
|
|
| >KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0035 Score=64.44 Aligned_cols=117 Identities=19% Similarity=0.344 Sum_probs=79.8
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHC---C------cEEEEECCCCCCCCchhhhhc
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV---G------YSLLIVNYRGSLGFGEEALQS 642 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~---G------~~Vl~~d~rG~~g~G~~~~~~ 642 (826)
.|..+|-+...|+..+..++.-.++++||.|++ ...|-..+..|..- | |.|++|..+| ||.+..
T Consensus 132 eGL~iHFlhvk~p~~k~~k~v~PlLl~HGwPGs--v~EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPG---ygwSd~-- 204 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQKKKKKKVKPLLLLHGWPGS--VREFYKFIPLLTDPKRHGNESDYAFEVIAPSLPG---YGWSDA-- 204 (469)
T ss_pred cceeEEEEEecCCccccCCcccceEEecCCCch--HHHHHhhhhhhcCccccCCccceeEEEeccCCCC---cccCcC--
Confidence 578888888887754344444457889999987 44555566666433 3 7899999999 665532
Q ss_pred CCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEE
Q 003363 643 LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA 699 (826)
Q Consensus 643 ~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~ 699 (826)
+...|-. ...++..++-|.=+ +.-++..|-|.-+|..++..++..+|+.+.+.
T Consensus 205 -~sk~GFn-~~a~ArvmrkLMlR--Lg~nkffiqGgDwGSiI~snlasLyPenV~Gl 257 (469)
T KOG2565|consen 205 -PSKTGFN-AAATARVMRKLMLR--LGYNKFFIQGGDWGSIIGSNLASLYPENVLGL 257 (469)
T ss_pred -CccCCcc-HHHHHHHHHHHHHH--hCcceeEeecCchHHHHHHHHHhhcchhhhHh
Confidence 3333333 34445555544433 34588999999999999999999999987654
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.03 Score=60.92 Aligned_cols=266 Identities=16% Similarity=0.142 Sum_probs=136.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
+.+...+..|.|.+||-.++. | ...|| .+|...+.+.+...+ .+++|+|.+..=+.+......
T Consensus 401 g~Vr~iSvdp~G~wlasGsdD--G---tvriWEi~TgRcvr~~~~d~~I----------~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 401 GLVRSISVDPSGEWLASGSDD--G---TVRIWEIATGRCVRTVQFDSEI----------RSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred CeEEEEEecCCcceeeecCCC--C---cEEEEEeecceEEEEEeeccee----------EEEEecCCCCceeEEEEecCc
Confidence 347788999999999875543 3 45555 455556666655544 899999998854443322211
Q ss_pred ---CCCCccC--CCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccC---Cc--eEeccCCCCCCccceEE
Q 003363 232 ---SKPTFSL--GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS---GE--VQAVKGIPKSLSVGQVV 301 (826)
Q Consensus 232 ---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~---g~--~~~l~~~~~~~~~~~~~ 301 (826)
..+.+.. ..+.....+.... . ......++..|.... ++ +... +...-.+.++.
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~-----~----------~~~p~~~~~~W~~~~~~e~~~~v~~~--I~~~k~i~~vt 528 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAP-----N----------ESEPDAAVVTWSRASLDELEKGVCIV--IKHPKSIRQVT 528 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCC-----C----------ccCCcccceeechhhhhhhccceEEE--EecCCccceee
Confidence 1111110 0000000000000 0 000122344443321 11 2222 34444677999
Q ss_pred EeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecC
Q 003363 302 WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSP 381 (826)
Q Consensus 302 wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~Sp 381 (826)
|.-+|.+ |+.+.-... ...+++.++... .+. ..+....+.+....|.|
T Consensus 529 WHrkGDY----latV~~~~~------------~~~VliHQLSK~--------------~sQ--~PF~kskG~vq~v~FHP 576 (733)
T KOG0650|consen 529 WHRKGDY----LATVMPDSG------------NKSVLIHQLSKR--------------KSQ--SPFRKSKGLVQRVKFHP 576 (733)
T ss_pred eecCCce----EEEeccCCC------------cceEEEEecccc--------------ccc--CchhhcCCceeEEEecC
Confidence 9999999 988874332 236777777211 111 12223345567778888
Q ss_pred CCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEE
Q 003363 382 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 461 (826)
Q Consensus 382 DG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~ 461 (826)
---+|+..+. ..|.++|+..+........ .+..+..++.+|.|..|++.
T Consensus 577 s~p~lfVaTq------------~~vRiYdL~kqelvKkL~t-------------------g~kwiS~msihp~GDnli~g 625 (733)
T KOG0650|consen 577 SKPYLFVATQ------------RSVRIYDLSKQELVKKLLT-------------------GSKWISSMSIHPNGDNLILG 625 (733)
T ss_pred CCceEEEEec------------cceEEEehhHHHHHHHHhc-------------------CCeeeeeeeecCCCCeEEEe
Confidence 7766654443 3488899877543211100 01134567788988888776
Q ss_pred EEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEE
Q 003363 462 SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKY 517 (826)
Q Consensus 462 ~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~ 517 (826)
+ .....-.|-+|+.++-.+.+......+ ...+..++.=+|...+.+..-.++.
T Consensus 626 s-~d~k~~WfDldlsskPyk~lr~H~~av--r~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 626 S-YDKKMCWFDLDLSSKPYKTLRLHEKAV--RSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred c-CCCeeEEEEcccCcchhHHhhhhhhhh--hhhhhccccceeeeecCCCcEEEEe
Confidence 3 334444555666655555554332211 2233344444455444444444443
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.14 Score=51.65 Aligned_cols=142 Identities=18% Similarity=0.228 Sum_probs=86.0
Q ss_pred cceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCC--eEEEEecCCCCCCeEEEEe
Q 003363 108 GTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGS--KLLVVRNPENESPIQFELW 185 (826)
Q Consensus 108 g~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~--~la~~~~~~~~~~~~~~i~ 185 (826)
|..-+..++.+-+++++.+-.|.++++.+... .-.|.... +.+....|+|+-. .|+-.++++ .+.+|
T Consensus 44 ~sitavAVs~~~~aSGssDetI~IYDm~k~~q-lg~ll~Ha-----gsitaL~F~~~~S~shLlS~sdDG-----~i~iw 112 (362)
T KOG0294|consen 44 GSITALAVSGPYVASGSSDETIHIYDMRKRKQ-LGILLSHA-----GSITALKFYPPLSKSHLLSGSDDG-----HIIIW 112 (362)
T ss_pred cceeEEEecceeEeccCCCCcEEEEeccchhh-hcceeccc-----cceEEEEecCCcchhheeeecCCC-----cEEEE
Confidence 33344555666667777788888888744322 11121222 4577778877765 666555443 56788
Q ss_pred cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCc
Q 003363 186 SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGE 265 (826)
Q Consensus 186 ~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~ 265 (826)
+.+...-+-.+ ....|.| ..++..|.|| ||....
T Consensus 113 ~~~~W~~~~sl-K~H~~~V------t~lsiHPS~K-LALsVg-------------------------------------- 146 (362)
T KOG0294|consen 113 RVGSWELLKSL-KAHKGQV------TDLSIHPSGK-LALSVG-------------------------------------- 146 (362)
T ss_pred EcCCeEEeeee-ccccccc------ceeEecCCCc-eEEEEc--------------------------------------
Confidence 66655333222 2333445 8999999997 555422
Q ss_pred cCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEe
Q 003363 266 TYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 317 (826)
Q Consensus 266 ~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~ 317 (826)
++..|-.||+-.|+.-.+ .+-......+.|+|.|.+ .+...
T Consensus 147 -----~D~~lr~WNLV~Gr~a~v--~~L~~~at~v~w~~~Gd~----F~v~~ 187 (362)
T KOG0294|consen 147 -----GDQVLRTWNLVRGRVAFV--LNLKNKATLVSWSPQGDH----FVVSG 187 (362)
T ss_pred -----CCceeeeehhhcCcccee--eccCCcceeeEEcCCCCE----EEEEe
Confidence 235678888877765544 222333445899999998 76665
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.037 Score=55.79 Aligned_cols=222 Identities=15% Similarity=0.056 Sum_probs=105.9
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
.+..-+|++|+..+|...+.. ...+|.. .+.+.-...+......+. ..++.|+|.+.+|+..+.+.....+
T Consensus 12 pitchAwn~drt~iAv~~~~~--evhiy~~-~~~~~w~~~htls~Hd~~------vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNH--EVHIYSM-LGADLWEPAHTLSEHDKI------VTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred ceeeeeecCCCceEEeccCCc--eEEEEEe-cCCCCceeceehhhhCcc------eeEEeecCCCCceeEccCCCCcccc
Confidence 377789999999999987653 1223332 233322333322222222 3789999999999988776644332
Q ss_pred Ccc-CCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEec---cCCCCCCccceEEEeeCCCCCc
Q 003363 235 TFS-LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV---KGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 235 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l---~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
... ...-+..........-..-+.|+|+-....++.+...|-|+=.+..+-=.+ ...+-...+....|.|++=.
T Consensus 83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL-- 160 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL-- 160 (361)
T ss_pred ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce--
Confidence 221 000000000000000011223555522233333444444444433221111 01343446778899998775
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEE
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFL 389 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~ 389 (826)
|+..+.+..-| --..|+-+++..+ ....+..+..-|+ ........+.+....|||+|..|+|.
T Consensus 161 --laaGs~D~k~r----------VfSayIK~Vdekp----ap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv 224 (361)
T KOG1523|consen 161 --LAAGSTDGKCR----------VFSAYIKGVDEKP----APTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWV 224 (361)
T ss_pred --ecccccCccee----------EEEEeeeccccCC----CCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEe
Confidence 55544221110 0122333332110 0000000001111 12222345668899999999999999
Q ss_pred eccCCCCCCCCcccceEEEEeCCCC
Q 003363 390 SAKSSVDSGAHSATDSLHRIDWPTN 414 (826)
Q Consensus 390 s~~~~~~~g~~~~~~~l~~~d~~~~ 414 (826)
+.+. .+...|....
T Consensus 225 ~Hds-----------~v~~~da~~p 238 (361)
T KOG1523|consen 225 GHDS-----------TVSFVDAAGP 238 (361)
T ss_pred cCCC-----------ceEEeecCCC
Confidence 9875 3666665443
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.15 Score=58.30 Aligned_cols=67 Identities=18% Similarity=0.309 Sum_probs=47.2
Q ss_pred ccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEE-ecCCCccccccCCCcccceeecC
Q 003363 141 SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEF-HVPQTVHGSVYADGWFEGISWNS 217 (826)
Q Consensus 141 ~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~-~~~~~~~g~v~~~~~~~~~~wSP 217 (826)
.+.|.|.. ..+...+||+||.+|+- +|...++.+|. .++ ++.. .+...+ ..+.|||
T Consensus 244 ~t~lHWH~-----~~V~~L~fS~~G~~LlS-----GG~E~VLv~Wq~~T~~-kqfLPRLgs~I----------~~i~vS~ 302 (792)
T KOG1963|consen 244 CTLLHWHH-----DEVNSLSFSSDGAYLLS-----GGREGVLVLWQLETGK-KQFLPRLGSPI----------LHIVVSP 302 (792)
T ss_pred ceEEEecc-----cccceeEEecCCceEee-----cccceEEEEEeecCCC-cccccccCCee----------EEEEEcC
Confidence 45666775 45888999999999976 46677999993 333 3333 222233 7899999
Q ss_pred CCCeEEEEeec
Q 003363 218 DETLIAYVAEE 228 (826)
Q Consensus 218 Dg~~ia~~~~~ 228 (826)
|+..-+.+.++
T Consensus 303 ds~~~sl~~~D 313 (792)
T KOG1963|consen 303 DSDLYSLVLED 313 (792)
T ss_pred CCCeEEEEecC
Confidence 99988777554
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00047 Score=73.39 Aligned_cols=92 Identities=16% Similarity=0.293 Sum_probs=58.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
..+....|||||++||.++.++ .+.|. +..++ ..+-....|.. .++.||||||+|+...|+.-.
T Consensus 291 g~in~f~FS~DG~~LA~VSqDG-----fLRvF~fdt~eL---lg~mkSYFGGL------LCvcWSPDGKyIvtGGEDDLV 356 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDG-----FLRIFDFDTQEL---LGVMKSYFGGL------LCVCWSPDGKYIVTGGEDDLV 356 (636)
T ss_pred ccccceeEcCCCceEEEEecCc-----eEEEeeccHHHH---HHHHHhhccce------EEEEEcCCccEEEecCCcceE
Confidence 3577889999999999998875 44444 22222 12222222222 689999999999998887754
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeec
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 261 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (826)
.. |..........-..+++|+..++|++
T Consensus 357 tV--wSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 357 TV--WSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EE--EEeccceEEEeccccccceeeEeecc
Confidence 32 32222333334456889998888874
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.24 Score=54.26 Aligned_cols=209 Identities=14% Similarity=0.143 Sum_probs=122.5
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
......+|+|.+++..... ...+..++ ..........+.... .++.++||++.++..-...
T Consensus 76 p~~i~v~~~~~~vyv~~~~---~~~v~vid~~~~~~~~~~~vG~~P----------~~~~~~~~~~~vYV~n~~~----- 137 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGD---SNTVSVIDTATNTVLGSIPVGLGP----------VGLAVDPDGKYVYVANAGN----- 137 (381)
T ss_pred ccceeeCCCCCeEEEecCC---CCeEEEEcCcccceeeEeeeccCC----------ceEEECCCCCEEEEEeccc-----
Confidence 4567889999887554322 22455555 222333333333333 5899999999887653211
Q ss_pred CccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003363 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (826)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lv 314 (826)
....+.++|..++++... .+.......++++|||+. ++
T Consensus 138 ------------------------------------~~~~vsvid~~t~~~~~~--~~vG~~P~~~a~~p~g~~----vy 175 (381)
T COG3391 138 ------------------------------------GNNTVSVIDAATNKVTAT--IPVGNTPTGVAVDPDGNK----VY 175 (381)
T ss_pred ------------------------------------CCceEEEEeCCCCeEEEE--EecCCCcceEEECCCCCe----EE
Confidence 236789999988877655 333334478999999996 54
Q ss_pred EEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCccee-----cCCCCccccCceecCCCCEEEEE
Q 003363 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN-----LTESISSAFFPRFSPDGKFLVFL 389 (826)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----Lt~~~~~~~~p~~SpDG~~l~f~ 389 (826)
. .+. ..+.|..+|. .+....+ .-..........++|||++++ .
T Consensus 176 v-~~~-------------~~~~v~vi~~-----------------~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~y-V 223 (381)
T COG3391 176 V-TNS-------------DDNTVSVIDT-----------------SGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVY-V 223 (381)
T ss_pred E-Eec-------------CCCeEEEEeC-----------------CCcceeccccccccccCCCCceEEECCCCCEEE-E
Confidence 4 432 2236888886 3333332 111222346678999999764 4
Q ss_pred eccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEE
Q 003363 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (826)
Q Consensus 390 s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (826)
.... .....+..+|..++......... . .. ........|+|+.+|+.... ...
T Consensus 224 ~~~~-------~~~~~v~~id~~~~~v~~~~~~~----~-----~~---------~~~~v~~~p~g~~~yv~~~~--~~~ 276 (381)
T COG3391 224 ANDG-------SGSNNVLKIDTATGNVTATDLPV----G-----SG---------APRGVAVDPAGKAAYVANSQ--GGT 276 (381)
T ss_pred Eecc-------CCCceEEEEeCCCceEEEecccc----c-----cC---------CCCceeECCCCCEEEEEecC--CCe
Confidence 4432 11357888887775442110000 0 00 12245678999988776433 456
Q ss_pred EEEEECCCCcEEEe
Q 003363 470 IISVNVSSGELLRI 483 (826)
Q Consensus 470 l~~vdl~tg~~~~l 483 (826)
+..+|..+..+...
T Consensus 277 V~vid~~~~~v~~~ 290 (381)
T COG3391 277 VSVIDGATDRVVKT 290 (381)
T ss_pred EEEEeCCCCceeee
Confidence 78888777665554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.075 Score=58.55 Aligned_cols=92 Identities=13% Similarity=0.148 Sum_probs=55.7
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003363 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (826)
Q Consensus 105 s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (826)
.|||..+.... ...+++++.+ +|+....|.... ..+..++||.||++.|.. +......+
T Consensus 21 kPDGsqL~lAA----------g~rlliyD~n-dG~llqtLKgHK-----DtVycVAys~dGkrFASG-----~aDK~VI~ 79 (1081)
T KOG1538|consen 21 KPDGTQLILAA----------GSRLLVYDTS-DGTLLQPLKGHK-----DTVYCVAYAKDGKRFASG-----SADKSVII 79 (1081)
T ss_pred CCCCceEEEec----------CCEEEEEeCC-Cccccccccccc-----ceEEEEEEccCCceeccC-----CCceeEEE
Confidence 69999887753 2245666653 333333444443 458899999999999863 33347778
Q ss_pred ecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEe
Q 003363 185 WSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 226 (826)
Q Consensus 185 ~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~ 226 (826)
|...... +.. ..|+.+ +...+|.|-...|+.-+
T Consensus 80 W~~klEG-~Lk---YSH~D~-----IQCMsFNP~~h~LasCs 112 (1081)
T KOG1538|consen 80 WTSKLEG-ILK---YSHNDA-----IQCMSFNPITHQLASCS 112 (1081)
T ss_pred ecccccc-eee---eccCCe-----eeEeecCchHHHhhhcc
Confidence 8532211 111 112111 37889999988887653
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.17 Score=50.56 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=26.6
Q ss_pred cCceEEEEEccCCceEeccCCC-CCCccceEEEeeCCCCCccEEEEEe
Q 003363 271 RQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQYLVFVG 317 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~-~~~~~~~~~wSPDg~~~~~~lvf~~ 317 (826)
.+..|-++|...+ ...+-+.+ ..+..-++.|.+||+. |+...
T Consensus 138 ~rGViGvYd~r~~-fqrvgE~~t~GiGpHev~lm~DGrt----lvvan 180 (366)
T COG3490 138 NRGVIGVYDAREG-FQRVGEFSTHGIGPHEVTLMADGRT----LVVAN 180 (366)
T ss_pred CCceEEEEecccc-cceecccccCCcCcceeEEecCCcE----EEEeC
Confidence 3467888887633 33332122 2346668999999998 77653
|
|
| >PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0077 Score=67.25 Aligned_cols=134 Identities=19% Similarity=0.163 Sum_probs=76.0
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCcc---------ch--------HHHHHHHHCCcEEEEECCCCCCC
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS---------YS--------KSLAFLSSVGYSLLIVNYRGSLG 634 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~---------~~--------~~~~~la~~G~~Vl~~d~rG~~g 634 (826)
.+..+..|++...+ .....|+||++.|||+++.... .. .....+. +-..++.+|.+-..|
T Consensus 22 ~~~~lfyw~~~s~~--~~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~-~~an~l~iD~PvGtG 98 (415)
T PF00450_consen 22 ENAHLFYWFFESRN--DPEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWN-KFANLLFIDQPVGTG 98 (415)
T ss_dssp TTEEEEEEEEE-SS--GGCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GG-GTSEEEEE--STTST
T ss_pred CCcEEEEEEEEeCC--CCCCccEEEEecCCceeccccccccccCceEEeecccccccccccccc-cccceEEEeecCceE
Confidence 45678888887654 4567899999999998753110 00 0000111 126788999665455
Q ss_pred CchhhhhcCCCCCCcchHHHHHHHHHHHHH-cCCCCCCcEEEEEecchHHHHHHHHHh----C------CCceeEEEecC
Q 003363 635 FGEEALQSLPGKVGSQDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVAAAARN 703 (826)
Q Consensus 635 ~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~-~~~~d~~rv~l~G~S~GG~~a~~~a~~----~------p~~~~a~v~~~ 703 (826)
|.................+|+..+++...+ .+.....++.|+|.||||..+-.++.. . +-.++++++.+
T Consensus 99 fS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLkGi~IGn 178 (415)
T PF00450_consen 99 FSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLKGIAIGN 178 (415)
T ss_dssp T-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEEEEEEES
T ss_pred EeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccccccceecC
Confidence 654432211111112335666666654444 455666799999999999987665532 2 23589999999
Q ss_pred Cccch
Q 003363 704 PLCNL 708 (826)
Q Consensus 704 p~~~~ 708 (826)
|+++.
T Consensus 179 g~~dp 183 (415)
T PF00450_consen 179 GWIDP 183 (415)
T ss_dssp E-SBH
T ss_pred ccccc
Confidence 98775
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A .... |
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.037 Score=61.34 Aligned_cols=109 Identities=16% Similarity=0.186 Sum_probs=63.2
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCe
Q 003363 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 180 (826)
Q Consensus 101 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 180 (826)
--..||+|..+|-.. . .+.+....|+++....- .+...|....+ .+...+|||||++|+-++++.
T Consensus 530 ~l~~s~~gnliASaC-K---S~~~ehAvI~lw~t~~W-~~~~~L~~HsL-----TVT~l~FSpdg~~LLsvsRDR----- 594 (764)
T KOG1063|consen 530 ALAISPTGNLIASAC-K---SSLKEHAVIRLWNTANW-LQVQELEGHSL-----TVTRLAFSPDGRYLLSVSRDR----- 594 (764)
T ss_pred EEEecCCCCEEeehh-h---hCCccceEEEEEeccch-hhhheecccce-----EEEEEEECCCCcEEEEeecCc-----
Confidence 334588888776542 2 23345678888764211 11223544442 478899999999999987653
Q ss_pred EEEEecCC-ceeEEEecC-CCccccccCCCcccceeecCCCCeEEEEeecC
Q 003363 181 QFELWSQS-QLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (826)
Q Consensus 181 ~~~i~~~~-~~~~~~~~~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~ 229 (826)
.+-+|..+ ...-..+.. ...|-.| +...+|+||++.+|..+.++
T Consensus 595 t~sl~~~~~~~~~e~~fa~~k~HtRI-----IWdcsW~pde~~FaTaSRDK 640 (764)
T KOG1063|consen 595 TVSLYEVQEDIKDEFRFACLKAHTRI-----IWDCSWSPDEKYFATASRDK 640 (764)
T ss_pred eEEeeeeecccchhhhhccccccceE-----EEEcccCcccceeEEecCCc
Confidence 56666221 111111111 2233222 36778999999977766554
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.047 Score=53.34 Aligned_cols=175 Identities=13% Similarity=0.192 Sum_probs=106.9
Q ss_pred cCceEEEEEcc-CCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchh
Q 003363 271 RQPSLFVININ-SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 349 (826)
Q Consensus 271 ~~~~l~v~d~~-~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 349 (826)
+...||+++++ .+.++.+....-.-...+++||+.-.. +++++. .+..|.++|+..
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~----~~~~a~--------------GDGSLrl~d~~~----- 92 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHEN----QVIAAS--------------GDGSLRLFDLTM----- 92 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcc----eEEEEe--------------cCceEEEeccCC-----
Confidence 56889999996 444444421222335678999999888 888873 334677777632
Q ss_pred hhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeee
Q 003363 350 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (826)
Q Consensus 350 ~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 429 (826)
..+.+..+.++...+.+..|++--++.+.+++-+ ..|.+|+..-....+.
T Consensus 93 ----------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD----------~TiKLW~~~r~~Sv~T---------- 142 (311)
T KOG0277|consen 93 ----------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWD----------GTIKLWDPNRPNSVQT---------- 142 (311)
T ss_pred ----------CCcchhHHHhhhhheEEeccccccceeEEeeccC----------CceEeecCCCCcceEe----------
Confidence 4455667777788889999998777776666432 3456665433222111
Q ss_pred eeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeC
Q 003363 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 508 (826)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~ 508 (826)
|.| ...-+....|+|--..++.+++.++..+||-++.. |+...|......+---.|+.-...++++...
T Consensus 143 --------f~g-h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~-gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v 211 (311)
T KOG0277|consen 143 --------FNG-HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP-GKFMSIEAHNSEILCCDWSKYNHNVLATGGV 211 (311)
T ss_pred --------ecC-CccEEEEEecCCCCCCeEEEccCCceEEEEEecCC-CceeEEEeccceeEeecccccCCcEEEecCC
Confidence 222 11223467888876668888777788889988876 5555455544322222444444455555433
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.012 Score=64.61 Aligned_cols=157 Identities=13% Similarity=0.115 Sum_probs=94.7
Q ss_pred cccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCccee-ecCCCccC-CCccCceEEEEEccCCceE
Q 003363 209 WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW-EEDWGETY-AGKRQPSLFVININSGEVQ 286 (826)
Q Consensus 209 ~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~g~~~-~~~~~~~l~v~d~~~g~~~ 286 (826)
|...+..--+|+.+...+.+.+.+.+.......-..+...+|..|+.-.++ ..+ .+.+ ++.-...||+||+.+|..+
T Consensus 75 WVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~-~~lvaSgGLD~~IflWDin~~~~~ 153 (735)
T KOG0308|consen 75 WVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKN-NELVASGGLDRKIFLWDINTGTAT 153 (735)
T ss_pred HHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccC-ceeEEecCCCccEEEEEccCcchh
Confidence 447777778888888777776655322221111233445567777766665 333 3333 3334678999999988543
Q ss_pred eccCCCC-----------CCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhh
Q 003363 287 AVKGIPK-----------SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELK 355 (826)
Q Consensus 287 ~l~~~~~-----------~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 355 (826)
.+. ... ..++.+++-.+.|. ++..+ .....|..+|..
T Consensus 154 l~~-s~n~~t~~sl~sG~k~siYSLA~N~t~t-----~ivsG--------------gtek~lr~wDpr------------ 201 (735)
T KOG0308|consen 154 LVA-SFNNVTVNSLGSGPKDSIYSLAMNQTGT-----IIVSG--------------GTEKDLRLWDPR------------ 201 (735)
T ss_pred hhh-hccccccccCCCCCccceeeeecCCcce-----EEEec--------------CcccceEEeccc------------
Confidence 221 111 11333455555553 33322 122367788862
Q ss_pred cCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 356 ESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 356 ~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
...+..+|..+..++.....++||++++-.+++ ..|.+||+.-
T Consensus 202 ----t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSD-----------gtIrlWdLgq 244 (735)
T KOG0308|consen 202 ----TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSD-----------GTIRLWDLGQ 244 (735)
T ss_pred ----cccceeeeeccccceEEEEEcCCCCeEeecCCC-----------ceEEeeeccc
Confidence 345577888888889999999999999877765 3588888744
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.098 Score=55.77 Aligned_cols=241 Identities=12% Similarity=0.021 Sum_probs=124.9
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCce--eEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQL--EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~--~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
++....|+-... |+..+..+ ..+..+| ..|+. .+++....+.. ..-+...++| ++-++-....
T Consensus 36 g~~s~~w~~~n~-lvvas~~g---dk~~~~~~K~g~~~~Vp~~~k~~gd~-----~~Cv~~~s~S-----~y~~sgG~~~ 101 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAG---DKVMRIKEKDGKTPEVPRVRKLTGDN-----AFCVACASQS-----LYEISGGQSG 101 (673)
T ss_pred cceeeeccccce-EEEeecCC---ceeEEEecccCCCCccceeeccccch-----HHHHhhhhcc-----eeeeccCcCc
Confidence 478888876554 55544433 2367777 33331 22222221110 0001233344 3333322222
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
-...|+...+-.-+..+++.+-+.-+.|.-.--.........+|.+..+.++.-..-.+.+....+..+.+||..+.
T Consensus 102 ~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~--- 178 (673)
T KOG4378|consen 102 CVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRF--- 178 (673)
T ss_pred eeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccce---
Confidence 23344433333334455555433322332111111122234678888887765332212444456667889998887
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc--ceecCCCCccccCceecCCCCEEEEE
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP--VVNLTESISSAFFPRFSPDGKFLVFL 389 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~Lt~~~~~~~~p~~SpDG~~l~f~ 389 (826)
++..+. ....+.+||. .+.. ...+..+...+....|||-...|+..
T Consensus 179 -lL~~as--------------d~G~VtlwDv-----------------~g~sp~~~~~~~HsAP~~gicfspsne~l~vs 226 (673)
T KOG4378|consen 179 -LLSIAS--------------DKGAVTLWDV-----------------QGMSPIFHASEAHSAPCRGICFSPSNEALLVS 226 (673)
T ss_pred -eeEeec--------------cCCeEEEEec-----------------cCCCcccchhhhccCCcCcceecCCccceEEE
Confidence 666552 2236777886 3322 23444566678889999987655433
Q ss_pred eccCCCCCCCCcccceEEEEeCCCCCCC-CcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeE
Q 003363 390 SAKSSVDSGAHSATDSLHRIDWPTNGNF-SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 468 (826)
Q Consensus 390 s~~~~~~~g~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~ 468 (826)
-. -...|+++|..+.... +++ |..-+..++|+++|.+|... ..+.
T Consensus 227 VG----------~Dkki~~yD~~s~~s~~~l~---------------------y~~Plstvaf~~~G~~L~aG---~s~G 272 (673)
T KOG4378|consen 227 VG----------YDKKINIYDIRSQASTDRLT---------------------YSHPLSTVAFSECGTYLCAG---NSKG 272 (673)
T ss_pred ec----------ccceEEEeecccccccceee---------------------ecCCcceeeecCCceEEEee---cCCc
Confidence 31 2367999997653321 111 33345688999999766543 3456
Q ss_pred EEEEEECCCC
Q 003363 469 VIISVNVSSG 478 (826)
Q Consensus 469 ~l~~vdl~tg 478 (826)
.|+.+|+.+.
T Consensus 273 ~~i~YD~R~~ 282 (673)
T KOG4378|consen 273 ELIAYDMRST 282 (673)
T ss_pred eEEEEecccC
Confidence 7888888653
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.026 Score=58.63 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=47.9
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccc
Q 003363 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSA 374 (826)
Q Consensus 296 ~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~ 374 (826)
.+-+.+|+||+.. +++.+ -.+.++.+|+ ..|. ...+.++....
T Consensus 125 diydL~Ws~d~~~----l~s~s---------------~dns~~l~Dv-----------------~~G~l~~~~~dh~~yv 168 (434)
T KOG1009|consen 125 DIYDLAWSPDSNF----LVSGS---------------VDNSVRLWDV-----------------HAGQLLAILDDHEHYV 168 (434)
T ss_pred chhhhhccCCCce----eeeee---------------ccceEEEEEe-----------------ccceeEeecccccccc
Confidence 4557899999998 88877 2346888888 4444 45666777889
Q ss_pred cCceecCCCCEEEEEeccC
Q 003363 375 FFPRFSPDGKFLVFLSAKS 393 (826)
Q Consensus 375 ~~p~~SpDG~~l~f~s~~~ 393 (826)
...+|-|-+++++-.+.++
T Consensus 169 qgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 169 QGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred ceeecchhhhhhhhhccCc
Confidence 9999999999998877664
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.34 Score=48.66 Aligned_cols=56 Identities=23% Similarity=0.466 Sum_probs=37.1
Q ss_pred EEeCCCCCeEEEEecCCCCCCeEEEEe-c-C--CceeEEEecCCCccccccCCCcccceeecCCCCeEEEEe
Q 003363 159 VVPSPSGSKLLVVRNPENESPIQFELW-S-Q--SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 226 (826)
Q Consensus 159 ~~~SPdG~~la~~~~~~~~~~~~~~i~-~-~--~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~ 226 (826)
.+.++||+.||.+.+. .++|. . + +....-.+++...+ -+...++||||+..|||+.
T Consensus 3 ~~~~~~Gk~lAi~qd~------~iEiRsa~Ddf~si~~kcqVpkD~~------PQWRkl~WSpD~tlLa~a~ 62 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQ------CIEIRSAKDDFSSIIGKCQVPKDPN------PQWRKLAWSPDCTLLAYAE 62 (282)
T ss_pred eeecCCCcEEEEEecc------EEEEEeccCCchheeEEEecCCCCC------chheEEEECCCCcEEEEEc
Confidence 4678999999998764 57776 2 2 12233344544431 1236889999999999973
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.19 Score=51.58 Aligned_cols=199 Identities=14% Similarity=0.140 Sum_probs=125.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
+.+..+++-|-.++++..+.+ ..+.|| ..|++.-. +++-+ +...++++|+---+++...+++..
T Consensus 152 gWVr~vavdP~n~wf~tgs~D-----rtikIwDlatg~Lklt--ltGhi-------~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFATGSAD-----RTIKIWDLATGQLKLT--LTGHI-------ETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred ceEEEEeeCCCceeEEecCCC-----ceeEEEEcccCeEEEe--ecchh-------heeeeeeecccCceEEEecCCCee
Confidence 457888889988888765433 356777 34443322 22111 112789999988888877777654
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceE-eccCCCCCCccceEEEeeCCCCCc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~-~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
+ -|+..+.+....+..+.+-+.-....|.-...+++.++..+.|||+.+.... .+ ......+.++.+.|-.-+
T Consensus 218 K--CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l--~GH~~~V~~V~~~~~dpq-- 291 (460)
T KOG0285|consen 218 K--CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL--SGHTNPVASVMCQPTDPQ-- 291 (460)
T ss_pred E--EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe--cCCCCcceeEEeecCCCc--
Confidence 3 3444344433334444443333333443345566778899999999887644 44 334567888888886666
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEe
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 390 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s 390 (826)
|+-.+ -+..|..+|+. .+.....||.+...+......|+-.. |.|
T Consensus 292 --vit~S---------------~D~tvrlWDl~----------------agkt~~tlt~hkksvral~lhP~e~~--fAS 336 (460)
T KOG0285|consen 292 --VITGS---------------HDSTVRLWDLR----------------AGKTMITLTHHKKSVRALCLHPKENL--FAS 336 (460)
T ss_pred --eEEec---------------CCceEEEeeec----------------cCceeEeeecccceeeEEecCCchhh--hhc
Confidence 77665 34478888983 55667889998888888888887654 444
Q ss_pred ccCCCCCCCCcccceEEEEeCCCCCCC
Q 003363 391 AKSSVDSGAHSATDSLHRIDWPTNGNF 417 (826)
Q Consensus 391 ~~~~~~~g~~~~~~~l~~~d~~~~~~~ 417 (826)
.. ...+..|+++-|...
T Consensus 337 as----------~dnik~w~~p~g~f~ 353 (460)
T KOG0285|consen 337 AS----------PDNIKQWKLPEGEFL 353 (460)
T ss_pred cC----------CccceeccCCccchh
Confidence 32 234777777776543
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.058 Score=59.02 Aligned_cols=75 Identities=20% Similarity=0.310 Sum_probs=54.0
Q ss_pred CCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCcc
Q 003363 294 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISS 373 (826)
Q Consensus 294 ~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~ 373 (826)
+..+.-+.|.|.... |.+++ ....+|+.|+. ...+...|..+..-
T Consensus 128 ~~~vE~l~fHpTaDg----il~s~---------------a~g~v~i~D~s----------------tqk~~~el~~h~d~ 172 (1012)
T KOG1445|consen 128 NVIVECLRFHPTADG----ILASG---------------AHGSVYITDIS----------------TQKTAVELSGHTDK 172 (1012)
T ss_pred ceEEEEeecccCcCc----eEEec---------------cCceEEEEEcc----------------cCceeecccCCchh
Confidence 345556789998888 88876 22368999982 33445677777777
Q ss_pred ccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCC
Q 003363 374 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (826)
Q Consensus 374 ~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~ 414 (826)
+.+..||.||+.|+.. -++ .+|.++|..+.
T Consensus 173 vQSa~WseDG~llats-cKd----------kqirifDPRa~ 202 (1012)
T KOG1445|consen 173 VQSADWSEDGKLLATS-CKD----------KQIRIFDPRAS 202 (1012)
T ss_pred hhccccccCCceEeee-cCC----------cceEEeCCccC
Confidence 8999999999977654 332 56899997653
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.15 Score=49.61 Aligned_cols=223 Identities=17% Similarity=0.196 Sum_probs=111.4
Q ss_pred cEEEEeCC--CCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeE--EEEeecC
Q 003363 156 ASAVVPSP--SGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLI--AYVAEEP 229 (826)
Q Consensus 156 ~~~~~~SP--dG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~i--a~~~~~~ 229 (826)
+..++|-- -|..||-.+..+ ...|| .+++-.+.... ....++| ..++|.|.+--+ |..+.+
T Consensus 59 Vwqv~wahPk~G~iLAScsYDg-----kVIiWke~~g~w~k~~e~-~~h~~SV------NsV~wapheygl~LacasSD- 125 (299)
T KOG1332|consen 59 VWKVAWAHPKFGTILASCSYDG-----KVIIWKEENGRWTKAYEH-AAHSASV------NSVAWAPHEYGLLLACASSD- 125 (299)
T ss_pred eeEEeecccccCcEeeEeecCc-----eEEEEecCCCchhhhhhh-hhhcccc------eeecccccccceEEEEeeCC-
Confidence 55556644 677787776554 45677 23333332221 1222333 788999986544 443333
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc-eEeccCCCCCCccceEEEeeC---
Q 003363 230 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPL--- 305 (826)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSPD--- 305 (826)
+.-.|+.++-+++- ...+. ......+.+++|+|-
T Consensus 126 -----------------------------------------G~vsvl~~~~~g~w~t~ki~-~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 126 -----------------------------------------GKVSVLTYDSSGGWTTSKIV-FAHEIGVNSVSWAPASAP 163 (299)
T ss_pred -----------------------------------------CcEEEEEEcCCCCccchhhh-hccccccceeeecCcCCC
Confidence 23455666655332 22221 455678899999996
Q ss_pred CCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCC--
Q 003363 306 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDG-- 383 (826)
Q Consensus 306 g~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG-- 383 (826)
|. ++-..-....+|+-..-|.| .-.||..+-+ .-...+.|..+...++..+|.|.-
T Consensus 164 g~-----~~~~~~~~~~krlvSgGcDn-~VkiW~~~~~----------------~w~~e~~l~~H~dwVRDVAwaP~~gl 221 (299)
T KOG1332|consen 164 GS-----LVDQGPAAKVKRLVSGGCDN-LVKIWKFDSD----------------SWKLERTLEGHKDWVRDVAWAPSVGL 221 (299)
T ss_pred cc-----ccccCcccccceeeccCCcc-ceeeeecCCc----------------chhhhhhhhhcchhhhhhhhccccCC
Confidence 53 11111111122222222332 1234444320 112234577788888888888864
Q ss_pred --CEEEEEeccCCCCCCCCcccceEEEEeCCCCCCC-CcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEE
Q 003363 384 --KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF-SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 460 (826)
Q Consensus 384 --~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~ 460 (826)
.+|+-.+.+. +.-||..+-+.+..+ .+.. .|+ .-+.+++||.-|..| .
T Consensus 222 ~~s~iAS~SqDg---------~viIwt~~~e~e~wk~tll~---------------~f~----~~~w~vSWS~sGn~L-a 272 (299)
T KOG1332|consen 222 PKSTIASCSQDG---------TVIIWTKDEEYEPWKKTLLE---------------EFP----DVVWRVSWSLSGNIL-A 272 (299)
T ss_pred CceeeEEecCCC---------cEEEEEecCccCcccccccc---------------cCC----cceEEEEEeccccEE-E
Confidence 2344444332 223444432221111 1111 122 133477899999855 4
Q ss_pred EEEeCCeEEEEEEECCCCcEEEecC
Q 003363 461 SSIWGSSQVIISVNVSSGELLRITP 485 (826)
Q Consensus 461 ~~~~~~~~~l~~vdl~tg~~~~lt~ 485 (826)
.+..+....||.=++ .|+.+++..
T Consensus 273 Vs~GdNkvtlwke~~-~Gkw~~v~~ 296 (299)
T KOG1332|consen 273 VSGGDNKVTLWKENV-DGKWEEVGE 296 (299)
T ss_pred EecCCcEEEEEEeCC-CCcEEEccc
Confidence 444456667787776 467777653
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.012 Score=68.87 Aligned_cols=243 Identities=16% Similarity=0.158 Sum_probs=127.5
Q ss_pred CCcccceeecCCCCe----EEEEeecCCCCCCCccCCC---CC---CCCCCccCCCCCCcceeecCCC-ccCCCccCceE
Q 003363 207 DGWFEGISWNSDETL----IAYVAEEPSPSKPTFSLGS---TK---GGSSDKDCNSWKGQGDWEEDWG-ETYAGKRQPSL 275 (826)
Q Consensus 207 ~~~~~~~~wSPDg~~----ia~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~d~g-~~~~~~~~~~l 275 (826)
+..|..+.|++-|.. ||=..+++... .|+... .. .......+..-+...+|.+.-+ ...++..+..|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~--ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI 141 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIV--LYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEI 141 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceE--EecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcE
Confidence 345689999999988 66555555332 122110 00 0112223333344466777766 34566678999
Q ss_pred EEEEccCCceEeccCCCC----CCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhh
Q 003363 276 FVININSGEVQAVKGIPK----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (826)
Q Consensus 276 ~v~d~~~g~~~~l~~~~~----~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (826)
++||+..-+ +.. +++ ...+..++|.-.-.. |.-.+. ..+...++|+.
T Consensus 142 ~iWDlnn~~-tP~--~~~~~~~~~eI~~lsWNrkvqh----ILAS~s--------------~sg~~~iWDlr-------- 192 (1049)
T KOG0307|consen 142 LIWDLNKPE-TPF--TPGSQAPPSEIKCLSWNRKVSH----ILASGS--------------PSGRAVIWDLR-------- 192 (1049)
T ss_pred EEeccCCcC-CCC--CCCCCCCcccceEeccchhhhH----HhhccC--------------CCCCceecccc--------
Confidence 999997632 222 121 113344555544443 333221 11255667763
Q ss_pred hhhhcCCCCCCcceecCCCCc--cccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCC-CCcccceeeeee
Q 003363 352 LELKESSSEDLPVVNLTESIS--SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLEKIVDVIP 428 (826)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt~~~~--~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~ 428 (826)
....+..++...+ .+....|.||+..-+.+..+++ ..-.|-+||+.--.. .++..
T Consensus 193 --------~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd-------~~PviqlWDlR~assP~k~~~------- 250 (1049)
T KOG0307|consen 193 --------KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDD-------SAPVIQLWDLRFASSPLKILE------- 250 (1049)
T ss_pred --------CCCcccccccCCCccceeeeeeCCCCceeeeeecCCC-------CCceeEeecccccCCchhhhc-------
Confidence 3344556655533 4678999999865555555442 224567777643111 11100
Q ss_pred eeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC-CeeeEEEeecCCEEEEEEe
Q 003363 429 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVSS 507 (826)
Q Consensus 429 ~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~-~~~~~~~s~dg~~l~~~~s 507 (826)
.+..++..+.|.+.+..+++++..+ .+++.+|..||++.-=.+..+ -+....|++..-. ++.++
T Consensus 251 ------------~H~~GilslsWc~~D~~lllSsgkD--~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~-~~A~a 315 (1049)
T KOG0307|consen 251 ------------GHQRGILSLSWCPQDPRLLLSSGKD--NRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPS-VMAAA 315 (1049)
T ss_pred ------------ccccceeeeccCCCCchhhhcccCC--CCeeEecCCCceEeeecCCCCcceeeeeecCCCcc-hhhhh
Confidence 1445677889999886777776444 456666888888653333222 1233455654332 23333
Q ss_pred CCCCCCeEEE
Q 003363 508 SPVDVPQVKY 517 (826)
Q Consensus 508 ~~~~p~~l~~ 517 (826)
+.+..-+||-
T Consensus 316 sfdgkI~I~s 325 (1049)
T KOG0307|consen 316 SFDGKISIYS 325 (1049)
T ss_pred eeccceeeee
Confidence 4444444443
|
|
| >KOG3967 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.026 Score=53.49 Aligned_cols=101 Identities=24% Similarity=0.294 Sum_probs=62.3
Q ss_pred CCCCcEEEEEcCCCCCCCCccc---------------hHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHH
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSY---------------SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~---------------~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~ 653 (826)
..+..++|+|||.+.... .+| .+.+....+.||.|++.|.--...+-.... .+..+-...++
T Consensus 98 t~~~kLlVLIHGSGvVrA-GQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~~~kfye~k~--np~kyirt~ve 174 (297)
T KOG3967|consen 98 TNPQKLLVLIHGSGVVRA-GQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNRERKFYEKKR--NPQKYIRTPVE 174 (297)
T ss_pred cCccceEEEEecCceEec-chHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCchhhhhhhccc--CcchhccchHH
Confidence 445678999999553210 111 134455668899999998642221111111 12222233455
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC
Q 003363 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 694 (826)
Q Consensus 654 D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~ 694 (826)
.+.-...+++.- ..+..|+++.||+||++++.+..+.|+
T Consensus 175 h~~yvw~~~v~p--a~~~sv~vvahsyGG~~t~~l~~~f~~ 213 (297)
T KOG3967|consen 175 HAKYVWKNIVLP--AKAESVFVVAHSYGGSLTLDLVERFPD 213 (297)
T ss_pred HHHHHHHHHhcc--cCcceEEEEEeccCChhHHHHHHhcCC
Confidence 555555555543 456789999999999999999999885
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.029 Score=57.58 Aligned_cols=107 Identities=17% Similarity=0.260 Sum_probs=69.3
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
.+..+.++++++.+|||=.....| + +.+++....+.+.... .+.|.+ ..++|||||+.||..++++
T Consensus 130 ~gl~AlS~n~~n~ylAyp~s~t~G--d-V~l~d~~nl~~v~~I~-aH~~~l------Aalafs~~G~llATASeKG---- 195 (391)
T KOG2110|consen 130 KGLCALSPNNANCYLAYPGSTTSG--D-VVLFDTINLQPVNTIN-AHKGPL------AALAFSPDGTLLATASEKG---- 195 (391)
T ss_pred cceEeeccCCCCceEEecCCCCCc--e-EEEEEcccceeeeEEE-ecCCce------eEEEECCCCCEEEEeccCc----
Confidence 457777888888899996443322 2 3445444444444332 222333 7999999999999998765
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc-eEecc-CCCCCCccceEEEeeCCCCCcc
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVK-GIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~-~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
.-|.|+.+.+|+ +.+.. |+. ...+-+.+|+||++.
T Consensus 196 ---------------------------------------TVIRVf~v~~G~kl~eFRRG~~-~~~IySL~Fs~ds~~--- 232 (391)
T KOG2110|consen 196 ---------------------------------------TVIRVFSVPEGQKLYEFRRGTY-PVSIYSLSFSPDSQF--- 232 (391)
T ss_pred ---------------------------------------eEEEEEEcCCccEeeeeeCCce-eeEEEEEEECCCCCe---
Confidence 457777776664 33331 222 335668999999998
Q ss_pred EEEEEee
Q 003363 312 YLVFVGW 318 (826)
Q Consensus 312 ~lvf~~~ 318 (826)
|..+++
T Consensus 233 -L~~sS~ 238 (391)
T KOG2110|consen 233 -LAASSN 238 (391)
T ss_pred -EEEecC
Confidence 888773
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.087 Score=52.54 Aligned_cols=185 Identities=15% Similarity=0.118 Sum_probs=104.3
Q ss_pred EEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCC---CccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 157 SAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQ---TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 157 ~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~---~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
..-+|||||++|+-..++-+....++-+++ .....++-..+. +. ..+.|++||+.|+..- .....
T Consensus 117 GHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGp----------Hev~lm~DGrtlvvan-GGIet 185 (366)
T COG3490 117 GHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGP----------HEVTLMADGRTLVVAN-GGIET 185 (366)
T ss_pred cccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCc----------ceeEEecCCcEEEEeC-Cceec
Confidence 346899999988666555455666777773 334444443321 33 4788999999888652 22111
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCC---CCCccceEEEeeCCCCC
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP---KSLSVGQVVWAPLNEGL 309 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~---~~~~~~~~~wSPDg~~~ 309 (826)
.|.|.. -+.......+.|.++|..+|++..--..+ ..+++.++..-+||+
T Consensus 186 hpdfgR-------------------------~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgt-- 238 (366)
T COG3490 186 HPDFGR-------------------------TELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGT-- 238 (366)
T ss_pred ccccCc-------------------------cccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCc--
Confidence 111110 12223345689999998788753211123 345788899999998
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecC--C-----CCccccCceecCC
Q 003363 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT--E-----SISSAFFPRFSPD 382 (826)
Q Consensus 310 ~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt--~-----~~~~~~~p~~SpD 382 (826)
|+|.+.-..++ +....|.-.-. .++..+.|. + -..++.+.+...+
T Consensus 239 ---vwfgcQy~G~~--------~d~ppLvg~~~-----------------~g~~l~~~~~pee~~~~~anYigsiA~n~~ 290 (366)
T COG3490 239 ---VWFGCQYRGPR--------NDLPPLVGHFR-----------------KGEPLEFLDLPEEQTAAFANYIGSIAANRR 290 (366)
T ss_pred ---EEEEEEeeCCC--------ccCCcceeecc-----------------CCCcCcccCCCHHHHHHHHhhhhheeeccc
Confidence 88876433321 11112332222 222222221 1 1224556676666
Q ss_pred CCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCC
Q 003363 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (826)
Q Consensus 383 G~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~ 417 (826)
-..++.+|.+. +...+||.++|...
T Consensus 291 ~glV~lTSP~G----------N~~vi~da~tG~vv 315 (366)
T COG3490 291 DGLVALTSPRG----------NRAVIWDAATGAVV 315 (366)
T ss_pred CCeEEEecCCC----------CeEEEEEcCCCcEE
Confidence 66666666542 56888999997764
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.59 Score=44.83 Aligned_cols=141 Identities=15% Similarity=0.157 Sum_probs=78.4
Q ss_pred CceEEEEEccCCc-eEeccCCC-----CCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccc
Q 003363 272 QPSLFVININSGE-VQAVKGIP-----KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLY 345 (826)
Q Consensus 272 ~~~l~v~d~~~g~-~~~l~~~~-----~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 345 (826)
...|..||+.-.. +..+...- ....+..++..|.|+- |+... .+..|.| +|+.
T Consensus 203 dktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl----l~sg~-------------~dssc~l--ydir-- 261 (350)
T KOG0641|consen 203 DKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL----LASGH-------------ADSSCML--YDIR-- 261 (350)
T ss_pred CceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce----eeecc-------------CCCceEE--EEee--
Confidence 3456667765433 33332111 1224667889999995 54332 1122344 4551
Q ss_pred cchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceee
Q 003363 346 KSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 425 (826)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 425 (826)
.+..+++...+...+...+|||-.-+++.-+.+ ..|.+-|++++-...+..-
T Consensus 262 --------------g~r~iq~f~phsadir~vrfsp~a~yllt~syd-----------~~ikltdlqgdla~el~~~--- 313 (350)
T KOG0641|consen 262 --------------GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYD-----------MKIKLTDLQGDLAHELPIM--- 313 (350)
T ss_pred --------------CCceeeeeCCCccceeEEEeCCCceEEEEeccc-----------ceEEEeecccchhhcCceE---
Confidence 344466777778889999999998888766644 4588888887554433321
Q ss_pred eeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003363 426 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (826)
Q Consensus 426 ~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vd 474 (826)
++...++. .....|.|..- -+++++.+....||.++
T Consensus 314 ---vv~ehkdk---------~i~~rwh~~d~-sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 314 ---VVAEHKDK---------AIQCRWHPQDF-SFISSSADKTATLWALN 349 (350)
T ss_pred ---EEEeccCc---------eEEEEecCccc-eeeeccCcceEEEeccC
Confidence 11111222 22456877653 23344445556677654
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.057 Score=55.62 Aligned_cols=152 Identities=12% Similarity=0.087 Sum_probs=86.9
Q ss_pred ccCCCccCceEEEEEccCCceEecc--CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEc
Q 003363 265 ETYAGKRQPSLFVININSGEVQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 342 (826)
Q Consensus 265 ~~~~~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~ 342 (826)
..+++.-...|++|...+|..+.=. -+...-++.+.+|||.-+. +++++. -+..|.++|+
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~----vfaScS--------------~DgsIrIWDi 287 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG----VFASCS--------------CDGSIRIWDI 287 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc----eEEeee--------------cCceEEEEEe
Confidence 3444445678999988887643211 0224457889999999998 777652 1225777777
Q ss_pred ccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccc
Q 003363 343 SLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK 422 (826)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 422 (826)
... ..........+.+.+.-..|+.+-..||+...+ ..+.+||+..-+..
T Consensus 288 Rs~--------------~~~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd-----------Gt~~iwDLR~~~~~----- 337 (440)
T KOG0302|consen 288 RSG--------------PKKAAVSTKAHNSDVNVISWNRREPLLASGGDD-----------GTLSIWDLRQFKSG----- 337 (440)
T ss_pred cCC--------------CccceeEeeccCCceeeEEccCCcceeeecCCC-----------ceEEEEEhhhccCC-----
Confidence 321 011222224456677888999887766654433 35778887652221
Q ss_pred eeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003363 423 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (826)
Q Consensus 423 ~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl 475 (826)
..+..+.. +..-+..+.|+|....++..+..+....||-+.+
T Consensus 338 --~pVA~fk~---------Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 338 --QPVATFKY---------HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred --CcceeEEe---------ccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 01111111 1123557889997777776665555555554443
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.03 Score=63.29 Aligned_cols=81 Identities=20% Similarity=0.194 Sum_probs=56.1
Q ss_pred CceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 335 CALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 335 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
..|..+|. .+.. ++.+..+...+....|||||++|+-.+.+ ..|..||+++
T Consensus 556 f~I~vvD~-----------------~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD-----------~tIr~wDlpt 607 (910)
T KOG1539|consen 556 FSIRVVDV-----------------VTRKVVREFWGHGNRITDMTFSPDGRWLISASMD-----------STIRTWDLPT 607 (910)
T ss_pred eeEEEEEc-----------------hhhhhhHHhhccccceeeeEeCCCCcEEEEeecC-----------CcEEEEeccC
Confidence 36888887 5544 45555677778999999999999988876 3599999999
Q ss_pred CCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEE
Q 003363 414 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 463 (826)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~ 463 (826)
+... +.+..+ .-...+.+||+|..|..+..
T Consensus 608 ~~lI----------D~~~vd----------~~~~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 608 GTLI----------DGLLVD----------SPCTSLSFSPNGDFLATVHV 637 (910)
T ss_pred ccee----------eeEecC----------CcceeeEECCCCCEEEEEEe
Confidence 7642 111111 11236789999996654433
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.12 Score=52.45 Aligned_cols=171 Identities=19% Similarity=0.278 Sum_probs=87.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
..++..+|.||.++|+.+.+. ...++++...|+..+.+.+.+ .+. .+++++.-+|+ ++.+.+
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~---~~~i~els~~G~vlr~i~l~g--~~D------~EgI~y~g~~~-~vl~~E------ 83 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDE---PGEIYELSLDGKVLRRIPLDG--FGD------YEGITYLGNGR-YVLSEE------ 83 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETT---TTEEEEEETT--EEEEEE-SS---SS------EEEEEE-STTE-EEEEET------
T ss_pred CCccccEEcCCCCeEEEEECC---CCEEEEEcCCCCEEEEEeCCC--CCC------ceeEEEECCCE-EEEEEc------
Confidence 348899999999999888664 457888887677777776643 111 27888887775 333433
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEcc--CCc-----eEecc-CCC--CCCccceEEEe
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ--SGE-----VQAVK-GIP--KSLSVGQVVWA 303 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~--~g~-----~~~l~-~~~--~~~~~~~~~wS 303 (826)
+...|+++++. +.. ++.++ +.+ ++.....++|.
T Consensus 84 -------------------------------------r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D 126 (248)
T PF06977_consen 84 -------------------------------------RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYD 126 (248)
T ss_dssp -------------------------------------TTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEE
T ss_pred -------------------------------------CCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEc
Confidence 23577777763 222 12221 233 34457789999
Q ss_pred eCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCC
Q 003363 304 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDG 383 (826)
Q Consensus 304 PDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG 383 (826)
|.++. ++.+. +..| ..||.++..... ...... ...................+.|..
T Consensus 127 ~~~~~----L~v~k-E~~P------------~~l~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~d~S~l~~~p~t 182 (248)
T PF06977_consen 127 PKTNR----LFVAK-ERKP------------KRLYEVNGFPGG---FDLFVS----DDQDLDDDKLFVRDLSGLSYDPRT 182 (248)
T ss_dssp TTTTE----EEEEE-ESSS------------EEEEEEESTT-S---S--EEE----E-HHHH-HT--SS---EEEEETTT
T ss_pred CCCCE----EEEEe-CCCC------------hhhEEEccccCc---cceeec----cccccccccceeccccceEEcCCC
Confidence 99887 77654 3333 246666531000 000000 000000000011224556788888
Q ss_pred CEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 384 ~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
..|+.+|... ..|..+|..+
T Consensus 183 ~~lliLS~es----------~~l~~~d~~G 202 (248)
T PF06977_consen 183 GHLLILSDES----------RLLLELDRQG 202 (248)
T ss_dssp TEEEEEETTT----------TEEEEE-TT-
T ss_pred CeEEEEECCC----------CeEEEECCCC
Confidence 8888888764 4577787443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.02 Score=64.16 Aligned_cols=146 Identities=14% Similarity=0.181 Sum_probs=84.6
Q ss_pred hcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCc
Q 003363 121 LANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTV 200 (826)
Q Consensus 121 ~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 200 (826)
.+++++..+-.+++........ ..+ .-..+..++|||.-... |.+..++| ++++|+-.+..+-..--...
T Consensus 150 iSGSQDg~vK~~DlR~~~S~~t--~~~----nSESiRDV~fsp~~~~~-F~s~~dsG---~lqlWDlRqp~r~~~k~~AH 219 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKKSKST--FRS----NSESIRDVKFSPGYGNK-FASIHDSG---YLQLWDLRQPDRCEKKLTAH 219 (839)
T ss_pred EecCCCceEEEEeeeccccccc--ccc----cchhhhceeeccCCCce-EEEecCCc---eEEEeeccCchhHHHHhhcc
Confidence 3456677787888754433222 112 11358899999965443 33333334 55555432222211111123
Q ss_pred cccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEc
Q 003363 201 HGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI 280 (826)
Q Consensus 201 ~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~ 280 (826)
.|.| ..+.|+|++.+||... ++..+.+||.
T Consensus 220 ~GpV------~c~nwhPnr~~lATGG--------------------------------------------RDK~vkiWd~ 249 (839)
T KOG0269|consen 220 NGPV------LCLNWHPNREWLATGG--------------------------------------------RDKMVKIWDM 249 (839)
T ss_pred cCce------EEEeecCCCceeeecC--------------------------------------------CCccEEEEec
Confidence 3444 7899999999999854 3356888888
Q ss_pred cCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEc
Q 003363 281 NSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 342 (826)
Q Consensus 281 ~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~ 342 (826)
.+++...+-.+..-..++.+.|-|+-... |+..+- -.+..|+++|+
T Consensus 250 t~~~~~~~~tInTiapv~rVkWRP~~~~h---LAtcsm-------------v~dtsV~VWDv 295 (839)
T KOG0269|consen 250 TDSRAKPKHTINTIAPVGRVKWRPARSYH---LATCSM-------------VVDTSVHVWDV 295 (839)
T ss_pred cCCCccceeEEeecceeeeeeeccCccch---hhhhhc-------------cccceEEEEee
Confidence 77665443213444578899999998873 444331 13347888887
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.038 Score=62.01 Aligned_cols=144 Identities=11% Similarity=0.053 Sum_probs=94.8
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
++..|..||+...+-+... .....++.++.|||--.. ..+...+ .+.|-.+|+..
T Consensus 154 QDg~vK~~DlR~~~S~~t~-~~nSESiRDV~fsp~~~~----~F~s~~d--------------sG~lqlWDlRq------ 208 (839)
T KOG0269|consen 154 QDGTVKCWDLRSKKSKSTF-RSNSESIRDVKFSPGYGN----KFASIHD--------------SGYLQLWDLRQ------ 208 (839)
T ss_pred CCceEEEEeeecccccccc-cccchhhhceeeccCCCc----eEEEecC--------------CceEEEeeccC------
Confidence 4567888998877665552 223457889999995543 4333322 22566777731
Q ss_pred hhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeee
Q 003363 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 430 (826)
-..-..+++.+.+.+....|+|++.+||... ++ ..+.+||+.++....+. ....+.
T Consensus 209 ---------p~r~~~k~~AH~GpV~c~nwhPnr~~lATGG-RD----------K~vkiWd~t~~~~~~~~-tInTia--- 264 (839)
T KOG0269|consen 209 ---------PDRCEKKLTAHNGPVLCLNWHPNREWLATGG-RD----------KMVKIWDMTDSRAKPKH-TINTIA--- 264 (839)
T ss_pred ---------chhHHHHhhcccCceEEEeecCCCceeeecC-CC----------ccEEEEeccCCCcccee-EEeecc---
Confidence 2233578899999999999999999998655 32 45788888765543221 111111
Q ss_pred eccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCC
Q 003363 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS 477 (826)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~t 477 (826)
.+..+.|-|+-.+.+.+.+-..+..++++|+..
T Consensus 265 --------------pv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 265 --------------PVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred --------------eeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence 245778999988777776666778888888754
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.33 Score=51.52 Aligned_cols=205 Identities=13% Similarity=0.126 Sum_probs=103.1
Q ss_pred cccEEEEeCCCCC-eEEEEecCCCCCCeEEEEecCC-ceeEEEecCCCccccccCCCcccceeecCCCC-eEEEEeecCC
Q 003363 154 TGASAVVPSPSGS-KLLVVRNPENESPIQFELWSQS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVAEEPS 230 (826)
Q Consensus 154 ~~~~~~~~SPdG~-~la~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~-~ia~~~~~~~ 230 (826)
..++..+|.|.-. +++.+ ....|...+|.+...+ ....+. +-....+.| .++.|||-.. +|+..+.+++
T Consensus 187 ~Rit~l~fHPt~~~~lva~-GdK~G~VG~Wn~~~~~~d~d~v~-~f~~hs~~V------s~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAV-GDKGGQVGLWNFGTQEKDKDGVY-LFTPHSGPV------SGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceEEEEecccCcceEEEE-ccCCCcEEEEecCCCCCccCceE-EeccCCccc------cceEecCCChhheeeeccCce
Confidence 4588899999987 55444 3333554555553111 111111 111122233 8999999765 5555666666
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc--eEeccCCCCCCccceEEEeeCCCC
Q 003363 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLNEG 308 (826)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~--~~~l~~~~~~~~~~~~~wSPDg~~ 308 (826)
.+...+......+.....+...|.....+.-+-+..+.+..-..+-+||+.++. ...+ .-..-.+.++++.|--.+
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~--~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL--RLHKKKITSVALNPVCPW 336 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh--hhhhcccceeecCCCCch
Confidence 554333321111111111222222222222221222222222345566665443 3333 222337889999998887
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc--ceecCCCCccccCceecCCCCEE
Q 003363 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP--VVNLTESISSAFFPRFSPDGKFL 386 (826)
Q Consensus 309 ~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~Lt~~~~~~~~p~~SpDG~~l 386 (826)
+..++. .+....++|+..- .... ..-...+...+.+..|||+|-.|
T Consensus 337 ----~laT~s--------------~D~T~kIWD~R~l--------------~~K~sp~lst~~HrrsV~sAyFSPs~gtl 384 (498)
T KOG4328|consen 337 ----FLATAS--------------LDQTAKIWDLRQL--------------RGKASPFLSTLPHRRSVNSAYFSPSGGTL 384 (498)
T ss_pred ----heeecc--------------cCcceeeeehhhh--------------cCCCCcceecccccceeeeeEEcCCCCce
Confidence 544441 1224556666311 1111 23334566778999999999888
Q ss_pred EEEeccCCCCCCCCcccceEEEEeC
Q 003363 387 VFLSAKSSVDSGAHSATDSLHRIDW 411 (826)
Q Consensus 387 ~f~s~~~~~~~g~~~~~~~l~~~d~ 411 (826)
+....+ +.|.++|-
T Consensus 385 ~TT~~D-----------~~IRv~ds 398 (498)
T KOG4328|consen 385 LTTCQD-----------NEIRVFDS 398 (498)
T ss_pred EeeccC-----------CceEEeec
Confidence 876655 45888875
|
|
| >PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.085 Score=52.35 Aligned_cols=192 Identities=16% Similarity=0.162 Sum_probs=102.9
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCCc--cchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHH
Q 003363 578 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDV 655 (826)
Q Consensus 578 ~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~--~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~ 655 (826)
.|+..|+ ++.. ||.+-||.+..... .|....+.|+++||.|++.-|.-+-.+.. ........+
T Consensus 8 ~wvl~P~-----~P~g-vihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~tfDH~~---------~A~~~~~~f 72 (250)
T PF07082_consen 8 SWVLIPP-----RPKG-VIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVTFDHQA---------IAREVWERF 72 (250)
T ss_pred cEEEeCC-----CCCE-EEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCCCcHHH---------HHHHHHHHH
Confidence 3566665 2334 55555665443333 67888999999999999999865322211 111224455
Q ss_pred HHHHHHHHHcCCCCCC--cEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCcc
Q 003363 656 LTAIDHVIDMGLANPS--KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDS 733 (826)
Q Consensus 656 ~~~i~~l~~~~~~d~~--rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (826)
..+++.+.+...++.. ++.=+|||+|+-+-+.+...++..-++-++++ +-|.. ....++. .+.+.......
T Consensus 73 ~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliS-FNN~~---a~~aIP~---~~~l~~~l~~E 145 (250)
T PF07082_consen 73 ERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLFDVERAGNILIS-FNNFP---ADEAIPL---LEQLAPALRLE 145 (250)
T ss_pred HHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhccCcccceEEEe-cCChH---HHhhCch---HhhhccccccC
Confidence 6666666665444433 67889999999998877765543333333332 11110 0001111 11111111111
Q ss_pred CCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCC-CEEEEEeCCCCCC
Q 003363 734 FTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV-ETKVIVFPNDVHG 803 (826)
Q Consensus 734 ~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~-~~~~~~~p~~~H~ 803 (826)
| .|.+++...+.+.+- .....|+|-=.+|.+ +++..+.+.|+.+.. -++....+| .|-
T Consensus 146 F--~PsP~ET~~li~~~Y------~~~rnLLIkF~~D~i---Dqt~~L~~~L~~r~~~~~~~~~L~G-~HL 204 (250)
T PF07082_consen 146 F--TPSPEETRRLIRESY------QVRRNLLIKFNDDDI---DQTDELEQILQQRFPDMVSIQTLPG-NHL 204 (250)
T ss_pred c--cCCHHHHHHHHHHhc------CCccceEEEecCCCc---cchHHHHHHHhhhccccceEEeCCC-CCC
Confidence 2 233343333322211 123467777777765 688888898887633 356666764 674
|
Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis. |
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.16 Score=53.69 Aligned_cols=149 Identities=15% Similarity=0.158 Sum_probs=86.5
Q ss_pred cCCCccCceEEEEEccCCce--Eecc----CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEE
Q 003363 266 TYAGKRQPSLFVININSGEV--QAVK----GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 339 (826)
Q Consensus 266 ~~~~~~~~~l~v~d~~~g~~--~~l~----~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~ 339 (826)
++++.....|.+||+..... +.+. -......+.+++|.|--+. +.-.. ..++.|.+
T Consensus 193 Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~----lF~sv--------------~dd~~L~i 254 (422)
T KOG0264|consen 193 LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED----LFGSV--------------GDDGKLMI 254 (422)
T ss_pred EeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh----hheee--------------cCCCeEEE
Confidence 33344557788999864322 1110 0122346778999997776 53322 13347888
Q ss_pred EEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCC
Q 003363 340 VRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 418 (826)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 418 (826)
+|+.. .+.+ ......+.+.+...+|+|-+..|+-+... ..+|.+||+..=....
T Consensus 255 wD~R~---------------~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~----------D~tV~LwDlRnL~~~l 309 (422)
T KOG0264|consen 255 WDTRS---------------NTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA----------DKTVALWDLRNLNKPL 309 (422)
T ss_pred EEcCC---------------CCCCCcccccccCCceeEEEeCCCCCceEEeccC----------CCcEEEeechhcccCc
Confidence 99831 0122 22333456678889999977766544432 2568999986522211
Q ss_pred cccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003363 419 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (826)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl 475 (826)
-+ |.+ +...+..+.|||+...++.++..+++..+|-++-
T Consensus 310 h~-----------------~e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 310 HT-----------------FEG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred ee-----------------ccC-CCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 00 000 1224557889999999988887667777775553
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.29 Score=50.76 Aligned_cols=99 Identities=12% Similarity=0.146 Sum_probs=64.0
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
-+..|.+||+.+|....- ....-....+..+|+.+. |+..+ ....|.++|...
T Consensus 279 wDHTIk~WDletg~~~~~--~~~~ksl~~i~~~~~~~L----l~~gs---------------sdr~irl~DPR~------ 331 (423)
T KOG0313|consen 279 WDHTIKVWDLETGGLKST--LTTNKSLNCISYSPLSKL----LASGS---------------SDRHIRLWDPRT------ 331 (423)
T ss_pred ccceEEEEEeecccceee--eecCcceeEeecccccce----eeecC---------------CCCceeecCCCC------
Confidence 347899999998765432 233445667889998886 65544 122677888632
Q ss_pred hhhhhcCCCCCCc--ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 351 ELELKESSSEDLP--VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 351 ~~~~~~~~~~~~~--~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
.++. ..++..+...+....|||...+++....-+ +.+.+||..+..
T Consensus 332 ---------~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D----------~t~klWDvRS~k 379 (423)
T KOG0313|consen 332 ---------GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD----------NTVKLWDVRSTK 379 (423)
T ss_pred ---------CCCceeEEeeecchhhhhheecCCCCceEEEEEecC----------CeEEEEEeccCC
Confidence 2222 356778888899999999887654333222 457778876633
|
|
| >KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.02 Score=61.83 Aligned_cols=127 Identities=20% Similarity=0.262 Sum_probs=84.4
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcC-CCCCCCCccc--hHHHHHHHHCCcEEEEECCCCCCCCchhhhh------cCCCC
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHG-GPHSVSLSSY--SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ------SLPGK 646 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HG-g~~~~~~~~~--~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~------~~~~~ 646 (826)
..=++|.+..+. ....|+.|+|-| |+....+... ....+...+.|-.|+..++|- ||.+..- .+..-
T Consensus 71 ~Qq~~y~n~~~~-~~~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRF---YG~S~P~~~~st~nlk~L 146 (514)
T KOG2182|consen 71 FQQRFYNNNQWA-KPGGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRF---YGQSSPIGDLSTSNLKYL 146 (514)
T ss_pred hhhheeeccccc-cCCCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeec---cccCCCCCCCcccchhhh
Confidence 344455555432 345688888877 4433211111 134556678899999999998 5644210 11111
Q ss_pred CCcchHHHHHHHHHHHHHcC-CCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCcc
Q 003363 647 VGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (826)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~-~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 706 (826)
...+.+.|+...|+.+..+. .-+..++..+|.||-|.+++|+=.++|+++.++|+.++.+
T Consensus 147 Ss~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv 207 (514)
T KOG2182|consen 147 SSLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPV 207 (514)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccce
Confidence 12345788888888877764 4455699999999999999999999999999888877643
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.03 Score=72.50 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=65.0
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.|.++++||.++. ...|......|. .++.|+.++.+|.+. . ......++++.+.+...+... ....
T Consensus 1068 ~~~l~~lh~~~g~--~~~~~~l~~~l~-~~~~v~~~~~~g~~~---~-------~~~~~~l~~la~~~~~~i~~~-~~~~ 1133 (1296)
T PRK10252 1068 GPTLFCFHPASGF--AWQFSVLSRYLD-PQWSIYGIQSPRPDG---P-------MQTATSLDEVCEAHLATLLEQ-QPHG 1133 (1296)
T ss_pred CCCeEEecCCCCc--hHHHHHHHHhcC-CCCcEEEEECCCCCC---C-------CCCCCCHHHHHHHHHHHHHhh-CCCC
Confidence 3668999997655 346766776664 469999999998432 1 011123555544433333321 1235
Q ss_pred cEEEEEecchHHHHHHHHHh---CCCceeEEEecCC
Q 003363 672 KVTVVGGSHGGFLTTHLIGQ---APDKFVAAAARNP 704 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~---~p~~~~a~v~~~p 704 (826)
++.++|||+||.++..++.+ .++.+..+++..+
T Consensus 1134 p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252 1134 PYHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred CEEEEEechhhHHHHHHHHHHHHcCCceeEEEEecC
Confidence 79999999999999999875 4677877777664
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.27 Score=56.42 Aligned_cols=143 Identities=12% Similarity=0.153 Sum_probs=90.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
+.+-..+|.|.--+|+..-..+ ++++|+ .+.....+ ....|.| .++.|.|++-..+...++...
T Consensus 10 sRvKglsFHP~rPwILtslHsG-----~IQlWDYRM~tli~rF---deHdGpV------Rgv~FH~~qplFVSGGDDykI 75 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSG-----VIQLWDYRMGTLIDRF---DEHDGPV------RGVDFHPTQPLFVSGGDDYKI 75 (1202)
T ss_pred ccccceecCCCCCEEEEeecCc-----eeeeehhhhhhHHhhh---hccCCcc------ceeeecCCCCeEEecCCccEE
Confidence 4577789999988887654433 778884 33332222 2333444 899999998754444444333
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
..|+.......-....|..++....|....-..++...+..|.+|+-.+++...+. +.....+-...|.|....
T Consensus 76 --kVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl-tGHnHYVMcAqFhptEDl--- 149 (1202)
T KOG0292|consen 76 --KVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL-TGHNHYVMCAQFHPTEDL--- 149 (1202)
T ss_pred --EEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE-ecCceEEEeeccCCccce---
Confidence 34443333344455566677765555554444555667789999999998866552 444456777889998886
Q ss_pred EEEEEe
Q 003363 312 YLVFVG 317 (826)
Q Consensus 312 ~lvf~~ 317 (826)
||..+
T Consensus 150 -IVSaS 154 (1202)
T KOG0292|consen 150 -IVSAS 154 (1202)
T ss_pred -EEEec
Confidence 76665
|
|
| >KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.021 Score=59.86 Aligned_cols=89 Identities=22% Similarity=0.242 Sum_probs=61.7
Q ss_pred HHCCcEEEEECCCCCC---CCchhhhhc---CCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHh
Q 003363 618 SSVGYSLLIVNYRGSL---GFGEEALQS---LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 691 (826)
Q Consensus 618 a~~G~~Vl~~d~rG~~---g~G~~~~~~---~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~ 691 (826)
.+.+..++-++.|-.| -+|...... +..-...+.+.|....+.+|++.......+|.++|.|+||.+++|+=.+
T Consensus 108 p~~~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlK 187 (492)
T KOG2183|consen 108 PELKALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLK 187 (492)
T ss_pred HhhCceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhc
Confidence 4567788888888622 123221110 1111224557899999999988765667899999999999999999999
Q ss_pred CCCceeEEEe-cCCcc
Q 003363 692 APDKFVAAAA-RNPLC 706 (826)
Q Consensus 692 ~p~~~~a~v~-~~p~~ 706 (826)
+|..+.++.+ .+|+.
T Consensus 188 YPHiv~GAlAaSAPvl 203 (492)
T KOG2183|consen 188 YPHIVLGALAASAPVL 203 (492)
T ss_pred ChhhhhhhhhccCceE
Confidence 9998776654 45544
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.55 Score=47.63 Aligned_cols=176 Identities=13% Similarity=0.196 Sum_probs=86.4
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (826)
++++|.||.++|+.+.+.+ ..|+.++.++.-++.+.
T Consensus 25 SGLTy~pd~~tLfaV~d~~-------------------------------------------~~i~els~~G~vlr~i~- 60 (248)
T PF06977_consen 25 SGLTYNPDTGTLFAVQDEP-------------------------------------------GEIYELSLDGKVLRRIP- 60 (248)
T ss_dssp EEEEEETTTTEEEEEETTT-------------------------------------------TEEEEEETT--EEEEEE-
T ss_pred cccEEcCCCCeEEEEECCC-------------------------------------------CEEEEEcCCCCEEEEEe-
Confidence 8999999999998886643 67899998655455553
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecC--
Q 003363 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-- 368 (826)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt-- 368 (826)
..+......+++.-+|+ ++.+. .|...|+.++++... ........+.++
T Consensus 61 l~g~~D~EgI~y~g~~~-----~vl~~--------------Er~~~L~~~~~~~~~----------~~~~~~~~~~~~l~ 111 (248)
T PF06977_consen 61 LDGFGDYEGITYLGNGR-----YVLSE--------------ERDQRLYIFTIDDDT----------TSLDRADVQKISLG 111 (248)
T ss_dssp -SS-SSEEEEEE-STTE-----EEEEE--------------TTTTEEEEEEE--------------TT--EEEEEEEE--
T ss_pred CCCCCCceeEEEECCCE-----EEEEE--------------cCCCcEEEEEEeccc----------cccchhhceEEecc
Confidence 23333455777876665 44443 244478888773210 000011112222
Q ss_pred ---CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCC
Q 003363 369 ---ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 445 (826)
Q Consensus 369 ---~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~ 445 (826)
.++......+|.|.++.|+....+. ...|+.++...+... +. +.......... .....
T Consensus 112 ~~~~~N~G~EGla~D~~~~~L~v~kE~~---------P~~l~~~~~~~~~~~-~~-----~~~~~~~~~~~----~~~~d 172 (248)
T PF06977_consen 112 FPNKGNKGFEGLAYDPKTNRLFVAKERK---------PKRLYEVNGFPGGFD-LF-----VSDDQDLDDDK----LFVRD 172 (248)
T ss_dssp -S---SS--EEEEEETTTTEEEEEEESS---------SEEEEEEESTT-SS---E-----EEE-HHHH-HT------SS-
T ss_pred cccCCCcceEEEEEcCCCCEEEEEeCCC---------ChhhEEEccccCccc-ee-----ecccccccccc----ceecc
Confidence 1233367899999999988776553 245777765221110 00 00000000000 01123
Q ss_pred CCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003363 446 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (826)
Q Consensus 446 ~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~ 481 (826)
+..+.+.|....|++.+. ....|..+|. +|++.
T Consensus 173 ~S~l~~~p~t~~lliLS~--es~~l~~~d~-~G~~~ 205 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSD--ESRLLLELDR-QGRVV 205 (248)
T ss_dssp --EEEEETTTTEEEEEET--TTTEEEEE-T-T--EE
T ss_pred ccceEEcCCCCeEEEEEC--CCCeEEEECC-CCCEE
Confidence 456667777777777753 3345677785 45543
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.077 Score=56.52 Aligned_cols=178 Identities=14% Similarity=0.153 Sum_probs=99.8
Q ss_pred EEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCce
Q 003363 111 AMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL 190 (826)
Q Consensus 111 v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~ 190 (826)
+.|.+...-+++..-...|.+..+. .+.....|+... ...+....+||.-+.|+.+...+ | ...+|+....
T Consensus 127 v~YN~~DeyiAsvs~gGdiiih~~~-t~~~tt~f~~~s----gqsvRll~ys~skr~lL~~asd~-G---~VtlwDv~g~ 197 (673)
T KOG4378|consen 127 VDYNNTDEYIASVSDGGDIIIHGTK-TKQKTTTFTIDS----GQSVRLLRYSPSKRFLLSIASDK-G---AVTLWDVQGM 197 (673)
T ss_pred EEecCCcceeEEeccCCcEEEEecc-cCccccceecCC----CCeEEEeecccccceeeEeeccC-C---eEEEEeccCC
Confidence 3444444444544445555554432 222333443331 02356889999999998776544 3 5677743323
Q ss_pred eEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCc
Q 003363 191 EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGK 270 (826)
Q Consensus 191 ~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~ 270 (826)
....+....... .-.++.|||-...|+....
T Consensus 198 sp~~~~~~~HsA------P~~gicfspsne~l~vsVG------------------------------------------- 228 (673)
T KOG4378|consen 198 SPIFHASEAHSA------PCRGICFSPSNEALLVSVG------------------------------------------- 228 (673)
T ss_pred CcccchhhhccC------CcCcceecCCccceEEEec-------------------------------------------
Confidence 333332211111 1268999998776654311
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
-+..|+++|+...+...- ...+.....++|+|+|-. |+... ....|+.||+..
T Consensus 229 ~Dkki~~yD~~s~~s~~~--l~y~~Plstvaf~~~G~~----L~aG~---------------s~G~~i~YD~R~------ 281 (673)
T KOG4378|consen 229 YDKKINIYDIRSQASTDR--LTYSHPLSTVAFSECGTY----LCAGN---------------SKGELIAYDMRS------ 281 (673)
T ss_pred ccceEEEeecccccccce--eeecCCcceeeecCCceE----EEeec---------------CCceEEEEeccc------
Confidence 124688899876543322 233445678999999997 76544 334799999842
Q ss_pred hhhhhcCCCCCCcceecCCCCccccCceecCC
Q 003363 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPD 382 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpD 382 (826)
....+..+..+...+...+|-|-
T Consensus 282 ---------~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 282 ---------TKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred ---------CCCCceEeeecccceeEEEeeec
Confidence 22334555666666766666443
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.21 E-value=1.3 Score=45.00 Aligned_cols=100 Identities=11% Similarity=0.052 Sum_probs=65.1
Q ss_pred CceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCC
Q 003363 335 CALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (826)
Q Consensus 335 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~ 414 (826)
++|-++|+... ..+.+..+..+...+...+.+-+|..||-.|.+. .=|.++|..+|
T Consensus 159 GqvQi~dL~~~--------------~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG----------TLIRIFdt~~g 214 (346)
T KOG2111|consen 159 GQVQIVDLAST--------------KPNAPSIINAHDSDIACVALNLQGTLVATASTKG----------TLIRIFDTEDG 214 (346)
T ss_pred ceEEEEEhhhc--------------CcCCceEEEcccCceeEEEEcCCccEEEEeccCc----------EEEEEEEcCCC
Confidence 47888888210 1223456667777888899999999999888763 34677887776
Q ss_pred CCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECC
Q 003363 415 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 476 (826)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~ 476 (826)
+..+.... ..+ ...+..++||||+.+|.+ ++..++.++|.+...
T Consensus 215 ~~l~E~RR----------G~d-------~A~iy~iaFSp~~s~Lav-sSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 215 TLLQELRR----------GVD-------RADIYCIAFSPNSSWLAV-SSDKGTLHIFSLRDT 258 (346)
T ss_pred cEeeeeec----------CCc-------hheEEEEEeCCCccEEEE-EcCCCeEEEEEeecC
Confidence 65321100 000 012346789999987655 456789999988653
|
|
| >COG4782 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.017 Score=60.04 Aligned_cols=113 Identities=11% Similarity=0.120 Sum_probs=70.1
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCc--EEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY--SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~--~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (826)
...-++||+||..... ...-...++.....|+ ..+.+-.+-.+ .-+......+-..+...++...+++|.+...
T Consensus 114 ~~k~vlvFvHGfNntf-~dav~R~aqI~~d~g~~~~pVvFSWPS~g---~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~ 189 (377)
T COG4782 114 SAKTVLVFVHGFNNTF-EDAVYRTAQIVHDSGNDGVPVVFSWPSRG---SLLGYNYDRESTNYSRPALERLLRYLATDKP 189 (377)
T ss_pred CCCeEEEEEcccCCch-hHHHHHHHHHHhhcCCCcceEEEEcCCCC---eeeecccchhhhhhhHHHHHHHHHHHHhCCC
Confidence 4567999999955432 2233345565555554 44555554311 1111111112223346788889999988753
Q ss_pred CCCCcEEEEEecchHHHHHHHHHh--------CCCceeEEEecCCccch
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQ--------APDKFVAAAARNPLCNL 708 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~--------~p~~~~a~v~~~p~~~~ 708 (826)
..+|.|++||||.++++.++-+ .+.+|+-+|+.+|-.|.
T Consensus 190 --~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~ 236 (377)
T COG4782 190 --VKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDV 236 (377)
T ss_pred --CceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCCh
Confidence 4789999999999999887643 13467788888886654
|
|
| >PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.011 Score=51.05 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=49.0
Q ss_pred CCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 759 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 759 ~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
..|+|++.++.|+..|++.++.+.+.|.+ .+++.+++.||+... ....-..+.+.+||.
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~----s~lvt~~g~gHg~~~-~~s~C~~~~v~~yl~ 92 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPG----SRLVTVDGAGHGVYA-GGSPCVDKAVDDYLL 92 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCC----ceEEEEeccCcceec-CCChHHHHHHHHHHH
Confidence 58999999999999999999999999976 589999999999774 222355667777775
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity |
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.18 Score=53.44 Aligned_cols=61 Identities=13% Similarity=0.241 Sum_probs=36.8
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~ 229 (826)
.+...+.||||++||+. +..+.+.|| ++.+..+.+ .+..|.| .++.|=-.-..++..+.+.
T Consensus 204 eil~~avS~Dgkylatg-----g~d~~v~Iw~~~t~ehv~~~---~ghr~~V------~~L~fr~gt~~lys~s~Dr 266 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATG-----GRDRHVQIWDCDTLEHVKVF---KGHRGAV------SSLAFRKGTSELYSASADR 266 (479)
T ss_pred eeEEEEEcCCCcEEEec-----CCCceEEEecCcccchhhcc---cccccce------eeeeeecCccceeeeecCC
Confidence 47789999999999984 555688899 344544442 2333444 5555544333444444443
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.41 Score=54.22 Aligned_cols=105 Identities=10% Similarity=0.091 Sum_probs=56.3
Q ss_pred ceEEEEEccC-----CceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccc
Q 003363 273 PSLFVININS-----GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (826)
Q Consensus 273 ~~l~v~d~~~-----g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (826)
+.+-|+|..+ .++... ++-.-.+..+..||||++ ++..+. ....+-++|+.....
T Consensus 296 n~V~VID~~t~~~~~~~v~~y--IPVGKsPHGV~vSPDGky----lyVank--------------lS~tVSVIDv~k~k~ 355 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRY--VPVPKNPHGVNTSPDGKY----FIANGK--------------LSPTVTVIDVRKLDD 355 (635)
T ss_pred CEEEEEECCccccCCcceEEE--EECCCCccceEECCCCCE----EEEeCC--------------CCCcEEEEEChhhhh
Confidence 5688899877 244443 455556778999999997 766552 223677888721100
Q ss_pred hhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 348 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
...+..+.......++.-+. ....-.|.+||+ +|++--- .+++..||+.+
T Consensus 356 ----~~~~~~~~~~~vvaevevGl-GPLHTaFDg~G~--aytslf~---------dsqv~kwn~~~ 405 (635)
T PRK02888 356 ----LFDGKIKPRDAVVAEPELGL-GPLHTAFDGRGN--AYTTLFL---------DSQIVKWNIEA 405 (635)
T ss_pred ----hhhccCCccceEEEeeccCC-CcceEEECCCCC--EEEeEee---------cceeEEEehHH
Confidence 00000000011111222122 234457888886 5665431 25788898765
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.07 E-value=3.1 Score=49.98 Aligned_cols=88 Identities=8% Similarity=0.072 Sum_probs=49.6
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
..|.|||.+ |..... +.+.......++|-|.|.. |+.... .....+|..+..++
T Consensus 222 RkirV~drE-g~Lns~-se~~~~l~~~LsWkPsgs~----iA~iq~------------~~sd~~IvffErNG-------- 275 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNST-SEPVEGLQHSLSWKPSGSL----IAAIQC------------KTSDSDIVFFERNG-------- 275 (1265)
T ss_pred eeEEEeccc-chhhcc-cCcccccccceeecCCCCe----Eeeeee------------cCCCCcEEEEecCC--------
Confidence 568888876 544433 1333445568999999998 776552 22223455554310
Q ss_pred hhhcCCCCCCcce-ecCCCCccccCceecCCCCEEEEEecc
Q 003363 353 ELKESSSEDLPVV-NLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 353 ~~~~~~~~~~~~~-~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
..-|+.+ +.......+....|+.++..|+.....
T Consensus 276 ------L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~ 310 (1265)
T KOG1920|consen 276 ------LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSN 310 (1265)
T ss_pred ------ccccccccCCcccccchheeeecCCCCceeeeecc
Confidence 0112111 112222237889999999988875544
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.054 Score=57.35 Aligned_cols=219 Identities=14% Similarity=0.083 Sum_probs=116.5
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
+-+...+-+|+|.+|+-.... +.-.+|++ ..|....+.. .....| ..+.||-||..|+..+.+.....
T Consensus 82 g~v~al~s~n~G~~l~ag~i~--g~lYlWel-ssG~LL~v~~---aHYQ~I------TcL~fs~dgs~iiTgskDg~V~v 149 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTIS--GNLYLWEL-SSGILLNVLS---AHYQSI------TCLKFSDDGSHIITGSKDGAVLV 149 (476)
T ss_pred cceeeeecCCCceEEEeeccc--CcEEEEEe-ccccHHHHHH---hhccce------eEEEEeCCCcEEEecCCCccEEE
Confidence 447888889999988643111 22222322 3454433331 221222 68889999998888777765443
Q ss_pred CCccC-------CCCCCCCCCccCCCCCCcce--eecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEee
Q 003363 234 PTFSL-------GSTKGGSSDKDCNSWKGQGD--WEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP 304 (826)
Q Consensus 234 ~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSP 304 (826)
|.... ...+....+.+|...+.+.. +.+--+..++...+..+.+||+.+|.+-.- ..-+.....++..|
T Consensus 150 W~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt--i~fp~si~av~lDp 227 (476)
T KOG0646|consen 150 WLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT--ITFPSSIKAVALDP 227 (476)
T ss_pred EEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE--EecCCcceeEEEcc
Confidence 22210 01111223333333222111 111113445555678899999999865322 33445667889999
Q ss_pred CCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCc--cccCceecCC
Q 003363 305 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS--SAFFPRFSPD 382 (826)
Q Consensus 305 Dg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~--~~~~p~~SpD 382 (826)
-++ .+|.+.+ .+.||..++-.-+.+........-.....+...+.++.+ .+...+.|-|
T Consensus 228 ae~-----~~yiGt~--------------~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D 288 (476)
T KOG0646|consen 228 AER-----VVYIGTE--------------EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD 288 (476)
T ss_pred ccc-----EEEecCC--------------cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC
Confidence 777 5666632 335666655211111110000000012233455566655 6788999999
Q ss_pred CCEEEEEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 383 G~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
|+.|+-.+.+ ..+.+||..+.+.
T Consensus 289 gtlLlSGd~d-----------g~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 289 GTLLLSGDED-----------GKVCVWDIYSKQC 311 (476)
T ss_pred ccEEEeeCCC-----------CCEEEEecchHHH
Confidence 9987754443 4588888777554
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.48 Score=54.45 Aligned_cols=204 Identities=11% Similarity=0.070 Sum_probs=117.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
+.+..+.|.|++-.+ ++. |....+.+|.-.+.+-++.+. +.-+ .+....|.+.=-+|+..+++.+.+.
T Consensus 52 GpVRgv~FH~~qplF--VSG---GDDykIkVWnYk~rrclftL~-GHlD------YVRt~~FHheyPWIlSASDDQTIrI 119 (1202)
T KOG0292|consen 52 GPVRGVDFHPTQPLF--VSG---GDDYKIKVWNYKTRRCLFTLL-GHLD------YVRTVFFHHEYPWILSASDDQTIRI 119 (1202)
T ss_pred CccceeeecCCCCeE--Eec---CCccEEEEEecccceehhhhc-cccc------eeEEeeccCCCceEEEccCCCeEEE
Confidence 448899999987654 443 344578888654444444432 2211 1267788888889999998888775
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCC----------------------
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI---------------------- 291 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~---------------------- 291 (826)
|.|. ..+.......|..|+--..|.|.=.-..+..-+..+.|||+.+=+.+...+.
T Consensus 120 WNwq--sr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaV 197 (1202)
T KOG0292|consen 120 WNWQ--SRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAV 197 (1202)
T ss_pred Eecc--CCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCee
Confidence 5544 3444444555555554333333211223344567899999865433332100
Q ss_pred ------CCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcce
Q 003363 292 ------PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV 365 (826)
Q Consensus 292 ------~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (826)
..+-++...+|.|.-.- ||..+ .+|.-.||+++-. ..=++.
T Consensus 198 VK~VLEGHDRGVNwaAfhpTlpl----iVSG~-------------DDRqVKlWrmnet----------------KaWEvD 244 (1202)
T KOG0292|consen 198 VKHVLEGHDRGVNWAAFHPTLPL----IVSGA-------------DDRQVKLWRMNET----------------KAWEVD 244 (1202)
T ss_pred eeeeecccccccceEEecCCcce----EEecC-------------CcceeeEEEeccc----------------cceeeh
Confidence 01123345566665554 44333 2344578888731 112344
Q ss_pred ecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 366 NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 366 ~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
....+...+.+..|.|.-..|+-.+.+ ..|.+||+....
T Consensus 245 tcrgH~nnVssvlfhp~q~lIlSnsED-----------ksirVwDm~kRt 283 (1202)
T KOG0292|consen 245 TCRGHYNNVSSVLFHPHQDLILSNSED-----------KSIRVWDMTKRT 283 (1202)
T ss_pred hhhcccCCcceEEecCccceeEecCCC-----------ccEEEEeccccc
Confidence 556677788899999977766544443 357888876533
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.04 E-value=1.2 Score=45.24 Aligned_cols=173 Identities=12% Similarity=0.126 Sum_probs=94.1
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (826)
+++.|+||.+.|+-+.+.+ ++|.-++.++.-++.+.
T Consensus 89 S~LTynp~~rtLFav~n~p-------------------------------------------~~iVElt~~GdlirtiP- 124 (316)
T COG3204 89 SSLTYNPDTRTLFAVTNKP-------------------------------------------AAIVELTKEGDLIRTIP- 124 (316)
T ss_pred cceeeCCCcceEEEecCCC-------------------------------------------ceEEEEecCCceEEEec-
Confidence 8999999999988775543 67777887666555552
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc------c
Q 003363 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP------V 364 (826)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~------~ 364 (826)
..+-.....+.|.-+|+. +.+. + |..+||.+.++. ++.. .
T Consensus 125 L~g~~DpE~Ieyig~n~f-----vi~d-E-------------R~~~l~~~~vd~---------------~t~~~~~~~~~ 170 (316)
T COG3204 125 LTGFSDPETIEYIGGNQF-----VIVD-E-------------RDRALYLFTVDA---------------DTTVISAKVQK 170 (316)
T ss_pred ccccCChhHeEEecCCEE-----EEEe-h-------------hcceEEEEEEcC---------------CccEEeccceE
Confidence 222224456677777663 2222 1 333566555421 1111 1
Q ss_pred eecCC--C-CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCC-CCcccceeeeeeeeeccCCCCCcc
Q 003363 365 VNLTE--S-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLEKIVDVIPVVQCAEGDCFPG 440 (826)
Q Consensus 365 ~~Lt~--~-~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~g 440 (826)
..|-. . +......+|+|+.+.|.|...+.. ..||.++...... ...+...... ..
T Consensus 171 i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P---------~~I~~~~~~~~~l~~~~~~~~~~~------------~~ 229 (316)
T COG3204 171 IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP---------IGIFEVTQSPSSLSVHASLDPTAD------------RD 229 (316)
T ss_pred EeccccCCCCcCceeeecCCCCceEEEEEccCC---------cEEEEEecCCcccccccccCcccc------------cc
Confidence 12211 1 233567899999999998888753 4588876322111 1111111111 11
Q ss_pred cccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003363 441 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (826)
Q Consensus 441 ~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt 484 (826)
++-..+..+.+.+....+++.+.. ...|..+|+.+.-+..+.
T Consensus 230 ~f~~DvSgl~~~~~~~~LLVLS~E--Sr~l~Evd~~G~~~~~ls 271 (316)
T COG3204 230 LFVLDVSGLEFNAITNSLLVLSDE--SRRLLEVDLSGEVIELLS 271 (316)
T ss_pred eEeeccccceecCCCCcEEEEecC--CceEEEEecCCCeeeeEE
Confidence 233345666776655556665543 335667787554344443
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.56 Score=46.92 Aligned_cols=147 Identities=15% Similarity=0.091 Sum_probs=86.0
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecC-C----
Q 003363 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLT-E---- 369 (826)
Q Consensus 296 ~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt-~---- 369 (826)
.+..+.|-|++++ |+.... .+|..++++ ++.+ ...|. .
T Consensus 125 ~i~cvew~Pns~k----lasm~d----------------n~i~l~~l~----------------ess~~vaev~ss~s~e 168 (370)
T KOG1007|consen 125 KINCVEWEPNSDK----LASMDD----------------NNIVLWSLD----------------ESSKIVAEVLSSESAE 168 (370)
T ss_pred ceeeEEEcCCCCe----eEEecc----------------CceEEEEcc----------------cCcchheeeccccccc
Confidence 4457899999999 887761 267777773 2222 11111 1
Q ss_pred CCccccCceecC--CCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCC
Q 003363 370 SISSAFFPRFSP--DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 447 (826)
Q Consensus 370 ~~~~~~~p~~Sp--DG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~ 447 (826)
+....++-+||| ||.+++.++. ..|+.||+.|.....-.... +...+.
T Consensus 169 ~~~~ftsg~WspHHdgnqv~tt~d------------~tl~~~D~RT~~~~~sI~dA------------------Hgq~vr 218 (370)
T KOG1007|consen 169 MRHSFTSGAWSPHHDGNQVATTSD------------STLQFWDLRTMKKNNSIEDA------------------HGQRVR 218 (370)
T ss_pred ccceecccccCCCCccceEEEeCC------------CcEEEEEccchhhhcchhhh------------------hcceee
Confidence 123457789998 8998876553 34889998875442111110 112344
Q ss_pred CCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeC
Q 003363 448 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 508 (826)
Q Consensus 448 ~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~ 508 (826)
.+.|.|+-+.++++...++..+||-....+--++.+.....-+....|.+..+.++...++
T Consensus 219 dlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S 279 (370)
T KOG1007|consen 219 DLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS 279 (370)
T ss_pred eccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC
Confidence 6778899888888877777777775443333344444333222233566666666665544
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.93 E-value=2.2 Score=43.14 Aligned_cols=164 Identities=11% Similarity=0.051 Sum_probs=81.6
Q ss_pred cccceeEEEEEEeecCCCC-ccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCc
Q 003363 122 ANKRKKFMLSTVISKENEN-SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTV 200 (826)
Q Consensus 122 ~~~~~~~l~~~~i~~~~~~-~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 200 (826)
+++-+..+..|.+...+.. .+-....+ +-+....||-||.+++...- + +..++|.+ ..++..++-.....+
T Consensus 45 A~SWD~tVR~wevq~~g~~~~ka~~~~~-----~PvL~v~WsddgskVf~g~~-D-k~~k~wDL-~S~Q~~~v~~Hd~pv 116 (347)
T KOG0647|consen 45 AGSWDGTVRIWEVQNSGQLVPKAQQSHD-----GPVLDVCWSDDGSKVFSGGC-D-KQAKLWDL-ASGQVSQVAAHDAPV 116 (347)
T ss_pred ecccCCceEEEEEecCCcccchhhhccC-----CCeEEEEEccCCceEEeecc-C-CceEEEEc-cCCCeeeeeecccce
Confidence 3445566777777654321 11111111 34889999999977754332 2 22223333 345666655443333
Q ss_pred cccccCCCcccceeecCCCC--eEEEEeecCCCCCCCccCCCCCCC--CCCccCCCCCCcceeecCCC--ccCCCccCce
Q 003363 201 HGSVYADGWFEGISWNSDET--LIAYVAEEPSPSKPTFSLGSTKGG--SSDKDCNSWKGQGDWEEDWG--ETYAGKRQPS 274 (826)
Q Consensus 201 ~g~v~~~~~~~~~~wSPDg~--~ia~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~g--~~~~~~~~~~ 274 (826)
..+.|=+-.. -|+..+-+++.+ +|+....... ...++. .|.-|-- -..+.....+
T Consensus 117 ----------kt~~wv~~~~~~cl~TGSWDKTlK--fWD~R~~~pv~t~~LPeR-------vYa~Dv~~pm~vVata~r~ 177 (347)
T KOG0647|consen 117 ----------KTCHWVPGMNYQCLVTGSWDKTLK--FWDTRSSNPVATLQLPER-------VYAADVLYPMAVVATAERH 177 (347)
T ss_pred ----------eEEEEecCCCcceeEeccccccee--ecccCCCCeeeeeeccce-------eeehhccCceeEEEecCCc
Confidence 5666666554 556666665544 3331111100 001110 0111100 0112224578
Q ss_pred EEEEEccCCceE--eccCCCCCCccceEEEeeCCCCCccEEEEEe
Q 003363 275 LFVININSGEVQ--AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 317 (826)
Q Consensus 275 l~v~d~~~g~~~--~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~ 317 (826)
|.+++++++..+ ++. .+-......++--+|.+. .+..+
T Consensus 178 i~vynL~n~~te~k~~~-SpLk~Q~R~va~f~d~~~----~alGs 217 (347)
T KOG0647|consen 178 IAVYNLENPPTEFKRIE-SPLKWQTRCVACFQDKDG----FALGS 217 (347)
T ss_pred EEEEEcCCCcchhhhhc-CcccceeeEEEEEecCCc----eEeee
Confidence 899999766432 232 445567778888899887 65554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.4 Score=57.08 Aligned_cols=61 Identities=18% Similarity=0.186 Sum_probs=39.3
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~ 230 (826)
+....+--|+..|.++...+ .++.++ .....+-+..+..++ ...+||||++.++++....+
T Consensus 71 i~s~~fl~d~~~i~v~~~~G----~iilvd~et~~~eivg~vd~GI----------~aaswS~Dee~l~liT~~~t 132 (1265)
T KOG1920|consen 71 IVSVQFLADTNSICVITALG----DIILVDPETLELEIVGNVDNGI----------SAASWSPDEELLALITGRQT 132 (1265)
T ss_pred eEEEEEecccceEEEEecCC----cEEEEcccccceeeeeeccCce----------EEEeecCCCcEEEEEeCCcE
Confidence 55666677777777765443 355554 233333344444455 79999999999999877553
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.17 Score=53.57 Aligned_cols=172 Identities=13% Similarity=0.081 Sum_probs=100.4
Q ss_pred CceEEEEEccCCc---eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccch
Q 003363 272 QPSLFVININSGE---VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 348 (826)
Q Consensus 272 ~~~l~v~d~~~g~---~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 348 (826)
.++|-+||+.+.+ .....+++....++.+.|+|.... -++.+. .++.|...|+
T Consensus 209 ~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s----~i~ssS--------------yDGtiR~~D~------ 264 (498)
T KOG4328|consen 209 GGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS----QIYSSS--------------YDGTIRLQDF------ 264 (498)
T ss_pred CCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh----heeeec--------------cCceeeeeee------
Confidence 3678889985332 222224677778999999997776 445441 3347888888
Q ss_pred hhhhhhhcCCCCCCcceec-CC--CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceee
Q 003363 349 ASELELKESSSEDLPVVNL-TE--SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 425 (826)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~L-t~--~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 425 (826)
+++..+.+ +. ......+..|+.+...++|..+-+ .+.++|+.+++........
T Consensus 265 -----------~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-----------~f~~iD~R~~~s~~~~~~l-- 320 (498)
T KOG4328|consen 265 -----------EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-----------NFNVIDLRTDGSEYENLRL-- 320 (498)
T ss_pred -----------cchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-----------ceEEEEeecCCccchhhhh--
Confidence 44433322 22 333456677888888777776542 4667787776552100000
Q ss_pred eeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE-Ee--cCCCCCeeeEEEeecCCEE
Q 003363 426 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RI--TPAESNFSWSLLTLDGDNI 502 (826)
Q Consensus 426 ~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~-~l--t~~~~~~~~~~~s~dg~~l 502 (826)
+..-+..+.+.|--.+++.++..+....||-+.--.++.. -| ......+....|||+++.|
T Consensus 321 ----------------h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl 384 (498)
T KOG4328|consen 321 ----------------HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTL 384 (498)
T ss_pred ----------------hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCce
Confidence 0112345566676667777777777777775532233332 12 2222356667899999986
Q ss_pred EEEEe
Q 003363 503 IAVSS 507 (826)
Q Consensus 503 ~~~~s 507 (826)
+..+.
T Consensus 385 ~TT~~ 389 (498)
T KOG4328|consen 385 LTTCQ 389 (498)
T ss_pred Eeecc
Confidence 65543
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.85 E-value=1.3 Score=44.50 Aligned_cols=110 Identities=16% Similarity=0.183 Sum_probs=65.1
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCc-ceeeeeeeeccCC-CceEEEEcccccch
Q 003363 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE-TRKLGIKYCYNRP-CALYAVRVSLYKSE 348 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~-~~~~g~~~~~~~~-~~l~~~d~~~~~~~ 348 (826)
+..++-+.|+++|...... ......+-.+.|||...+ +.+++.-+. -|.+.+. |- +-+..+|..
T Consensus 166 r~~~VrLCDi~SGs~sH~L-sGHr~~vlaV~Wsp~~e~----vLatgsaDg~irlWDiR----rasgcf~~lD~h----- 231 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHTL-SGHRDGVLAVEWSPSSEW----VLATGSADGAIRLWDIR----RASGCFRVLDQH----- 231 (397)
T ss_pred CCCcEEEEeccCCcceeee-ccccCceEEEEeccCcee----EEEecCCCceEEEEEee----cccceeEEeecc-----
Confidence 4578999999999876551 223346778999999998 888763222 1112111 11 112233321
Q ss_pred hhhhhhhcCCCCCCcc---eecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 349 ASELELKESSSEDLPV---VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 349 ~~~~~~~~~~~~~~~~---~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
++... +.-+.+.+.+...+|+.||.+++....+ .++.+|+...|..
T Consensus 232 -----------n~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd-----------~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 232 -----------NTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD-----------DRIRVWNMESGRN 280 (397)
T ss_pred -----------cCccCccccccccccceeeeeeecccchhhhhccCc-----------cceEEeecccCcc
Confidence 11111 1123456668889999999998755543 4577777766654
|
|
| >PLN03016 sinapoylglucose-malate O-sinapoyltransferase | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.083 Score=58.46 Aligned_cols=132 Identities=19% Similarity=0.264 Sum_probs=76.5
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHH---------------------HHHHHHCCcEEEEECCC
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKS---------------------LAFLSSVGYSLLIVNYR 630 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~---------------------~~~la~~G~~Vl~~d~r 630 (826)
.+..+..|++...+ .....|+|+++-|||+.......... ...+. +-..++-+|.+
T Consensus 48 ~~~~lfy~f~es~~--~~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~-~~anllfiDqP 124 (433)
T PLN03016 48 ENVQFFYYFIKSEN--NPKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWT-KMANIIFLDQP 124 (433)
T ss_pred CCeEEEEEEEecCC--CcccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchh-hcCcEEEecCC
Confidence 34568888887553 45678999999999986431100000 00111 12578888866
Q ss_pred CCCCCchhhhhcCCCCCCc-chHHHHHHHHHHHH-HcCCCCCCcEEEEEecchHHHHHHHHHh----C------CCceeE
Q 003363 631 GSLGFGEEALQSLPGKVGS-QDVNDVLTAIDHVI-DMGLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVA 698 (826)
Q Consensus 631 G~~g~G~~~~~~~~~~~~~-~~~~D~~~~i~~l~-~~~~~d~~rv~l~G~S~GG~~a~~~a~~----~------p~~~~a 698 (826)
-..||...... ...... ..++|+..+++... +.+..-..++.|+|.|+||..+-.+|.. . +-.+++
T Consensus 125 vGtGfSy~~~~--~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~inLkG 202 (433)
T PLN03016 125 VGSGFSYSKTP--IDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQG 202 (433)
T ss_pred CCCCccCCCCC--CCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCccccee
Confidence 54555432111 111111 12356666555443 3444456789999999999876665542 1 125789
Q ss_pred EEecCCccch
Q 003363 699 AAARNPLCNL 708 (826)
Q Consensus 699 ~v~~~p~~~~ 708 (826)
+++.+|+.+.
T Consensus 203 i~iGNg~t~~ 212 (433)
T PLN03016 203 YMLGNPVTYM 212 (433)
T ss_pred eEecCCCcCc
Confidence 9999997654
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.26 Score=50.54 Aligned_cols=224 Identities=10% Similarity=0.123 Sum_probs=138.1
Q ss_pred hhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEec-
Q 003363 120 LLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHV- 196 (826)
Q Consensus 120 ~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~- 196 (826)
+..++.+..+-++++.++. ..+|..+ ....+..+++|+---+|....+++ .+..|+ ..+..+..+.
T Consensus 166 f~tgs~DrtikIwDlatg~---LkltltG---hi~~vr~vavS~rHpYlFs~gedk-----~VKCwDLe~nkvIR~YhGH 234 (460)
T KOG0285|consen 166 FATGSADRTIKIWDLATGQ---LKLTLTG---HIETVRGVAVSKRHPYLFSAGEDK-----QVKCWDLEYNKVIRHYHGH 234 (460)
T ss_pred EEecCCCceeEEEEcccCe---EEEeecc---hhheeeeeeecccCceEEEecCCC-----eeEEEechhhhhHHHhccc
Confidence 3445566777787774432 2333332 124588899998888886554433 455663 2222222211
Q ss_pred CCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEE
Q 003363 197 PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLF 276 (826)
Q Consensus 197 ~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~ 276 (826)
-.++ .++...|--..|+..+.+.+.+ .|+...+........+..-+.++.+.+--+..+++..+..|.
T Consensus 235 lS~V----------~~L~lhPTldvl~t~grDst~R--vWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 235 LSGV----------YCLDLHPTLDVLVTGGRDSTIR--VWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred ccee----------EEEeccccceeEEecCCcceEE--EeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence 1122 6788888888887777666544 444444444444555655566666666556777788889999
Q ss_pred EEEccCCceE-eccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhh
Q 003363 277 VININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELK 355 (826)
Q Consensus 277 v~d~~~g~~~-~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 355 (826)
+||+..|+.. .+ +.....+...+..|+-.. ++..+ ..+|-.++++
T Consensus 303 lWDl~agkt~~tl--t~hkksvral~lhP~e~~----fASas----------------~dnik~w~~p------------ 348 (460)
T KOG0285|consen 303 LWDLRAGKTMITL--THHKKSVRALCLHPKENL----FASAS----------------PDNIKQWKLP------------ 348 (460)
T ss_pred EeeeccCceeEee--ecccceeeEEecCCchhh----hhccC----------------CccceeccCC------------
Confidence 9999877644 44 566667888889997665 33222 1257777774
Q ss_pred cCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 356 ESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 356 ~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
.+.-...|..+...+.......||-.+ ... ....|+.|||.++-.
T Consensus 349 ----~g~f~~nlsgh~~iintl~~nsD~v~~--~G~----------dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 349 ----EGEFLQNLSGHNAIINTLSVNSDGVLV--SGG----------DNGSIMFWDWKSGHN 393 (460)
T ss_pred ----ccchhhccccccceeeeeeeccCceEE--EcC----------CceEEEEEecCcCcc
Confidence 444566677777667777777787432 222 235799999998755
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.12 Score=56.99 Aligned_cols=60 Identities=13% Similarity=0.205 Sum_probs=39.1
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeec
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 228 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~ 228 (826)
.+...+|-|||.+|+....+. ++..+ .+|..-+.. .+..+-| ..++||.||++.|..+.+
T Consensus 14 ci~d~afkPDGsqL~lAAg~r-----lliyD~ndG~llqtL---KgHKDtV------ycVAys~dGkrFASG~aD 74 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSR-----LLVYDTSDGTLLQPL---KGHKDTV------YCVAYAKDGKRFASGSAD 74 (1081)
T ss_pred chheeEECCCCceEEEecCCE-----EEEEeCCCccccccc---ccccceE------EEEEEccCCceeccCCCc
Confidence 477889999999998875543 55555 333332222 2333333 799999999998875443
|
|
| >COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.042 Score=55.75 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=63.9
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHH-HHHHHcCCCCCC
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI-DHVIDMGLANPS 671 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i-~~l~~~~~~d~~ 671 (826)
|.++++|++.+. ...|.....+|... ..|+.++.+|.+... .....++|..+.. +.+.+. -...
T Consensus 1 ~pLF~fhp~~G~--~~~~~~L~~~l~~~-~~v~~l~a~g~~~~~----------~~~~~l~~~a~~yv~~Ir~~--QP~G 65 (257)
T COG3319 1 PPLFCFHPAGGS--VLAYAPLAAALGPL-LPVYGLQAPGYGAGE----------QPFASLDDMAAAYVAAIRRV--QPEG 65 (257)
T ss_pred CCEEEEcCCCCc--HHHHHHHHHHhccC-ceeeccccCcccccc----------cccCCHHHHHHHHHHHHHHh--CCCC
Confidence 568899996554 44666677777666 889999999843211 1122355544433 333332 1245
Q ss_pred cEEEEEecchHHHHHHHHHhC---CCceeEEEecCCccc
Q 003363 672 KVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCN 707 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~---p~~~~a~v~~~p~~~ 707 (826)
++.|.|||+||.++..+|.+. .+.+..++++.++..
T Consensus 66 Py~L~G~S~GG~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 66 PYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred CEEEEeeccccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 899999999999999888753 335666666665544
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.71 E-value=2.7 Score=42.46 Aligned_cols=182 Identities=19% Similarity=0.150 Sum_probs=90.3
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhh
Q 003363 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (826)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (826)
...|+.+|..+|++..-...+...... + ..++.. |++.. ....|+.+|+
T Consensus 45 ~~~l~~~d~~tG~~~W~~~~~~~~~~~-~--~~~~~~----v~v~~---------------~~~~l~~~d~--------- 93 (238)
T PF13360_consen 45 DGNLYALDAKTGKVLWRFDLPGPISGA-P--VVDGGR----VYVGT---------------SDGSLYALDA--------- 93 (238)
T ss_dssp TSEEEEEETTTSEEEEEEECSSCGGSG-E--EEETTE----EEEEE---------------TTSEEEEEET---------
T ss_pred CCEEEEEECCCCCEEEEeeccccccce-e--eecccc----ccccc---------------ceeeeEeccc---------
Confidence 378999999999876542122222211 2 344554 65554 1227999997
Q ss_pred hhhhcCCCCCCcceec-CCC----CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcc--ccee
Q 003363 352 LELKESSSEDLPVVNL-TES----ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL--EKIV 424 (826)
Q Consensus 352 ~~~~~~~~~~~~~~~L-t~~----~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~--~~~~ 424 (826)
.+|+...- ... ......+....+|+.+++.... ..|+.+|+.+|...-.. ....
T Consensus 94 --------~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 94 --------KTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS-----------GKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp --------TTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC-----------SEEEEEETTTTEEEEEEESSTT-
T ss_pred --------CCcceeeeeccccccccccccccCceEecCEEEEEecc-----------CcEEEEecCCCcEEEEeecCCCC
Confidence 56654322 111 1122334444457777665542 46899998887652100 0000
Q ss_pred eeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEE
Q 003363 425 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIA 504 (826)
Q Consensus 425 ~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~ 504 (826)
...++. . .......+.+ .++ .+++... .+. ++.+|+.+|+..- ...... .......+++.+++
T Consensus 155 ~~~~~~------~----~~~~~~~~~~-~~~-~v~~~~~-~g~--~~~~d~~tg~~~w-~~~~~~-~~~~~~~~~~~l~~ 217 (238)
T PF13360_consen 155 GSSPIS------S----FSDINGSPVI-SDG-RVYVSSG-DGR--VVAVDLATGEKLW-SKPISG-IYSLPSVDGGTLYV 217 (238)
T ss_dssp SS--EE------E----ETTEEEEEEC-CTT-EEEEECC-TSS--EEEEETTTTEEEE-EECSS--ECECEECCCTEEEE
T ss_pred CCccee------e----ecccccceEE-ECC-EEEEEcC-CCe--EEEEECCCCCEEE-EecCCC-ccCCceeeCCEEEE
Confidence 000000 0 0000012222 245 5655432 332 6777999998553 322221 22235667777776
Q ss_pred EEeCCCCCCeEEEEeecccC
Q 003363 505 VSSSPVDVPQVKYGYFVDKA 524 (826)
Q Consensus 505 ~~s~~~~p~~l~~~~~~~~~ 524 (826)
.. . -..++.+|+.+++
T Consensus 218 ~~-~---~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 218 TS-S---DGRLYALDLKTGK 233 (238)
T ss_dssp EE-T---TTEEEEEETTTTE
T ss_pred Ee-C---CCEEEEEECCCCC
Confidence 66 3 2568888877653
|
... |
| >PLN02209 serine carboxypeptidase | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.11 Score=57.57 Aligned_cols=133 Identities=19% Similarity=0.249 Sum_probs=77.0
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH-------H--------------HHHHHHCCcEEEEECCC
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-------S--------------LAFLSSVGYSLLIVNYR 630 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~-------~--------------~~~la~~G~~Vl~~d~r 630 (826)
.+..+..|++.... .....|+|+++-|||+......... . ...+. +-..++-+|.+
T Consensus 50 ~~~~lf~~f~es~~--~~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~-~~anllfiDqP 126 (437)
T PLN02209 50 ENVQFFYYFIKSDK--NPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWT-KTANIIFLDQP 126 (437)
T ss_pred CCeEEEEEEEecCC--CCCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchh-hcCcEEEecCC
Confidence 35567777776553 4456899999999998753211000 0 00111 12467888866
Q ss_pred CCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHH-cCCCCCCcEEEEEecchHHHHHHHHHh----C------CCceeEE
Q 003363 631 GSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVAA 699 (826)
Q Consensus 631 G~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~-~~~~d~~rv~l~G~S~GG~~a~~~a~~----~------p~~~~a~ 699 (826)
-..||......... ..-..+++|+..+++...+ .+.....++.|+|.|+||..+-.++.. . +-.++++
T Consensus 127 vGtGfSy~~~~~~~-~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~~~inl~Gi 205 (437)
T PLN02209 127 VGSGFSYSKTPIER-TSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNPPINLQGY 205 (437)
T ss_pred CCCCccCCCCCCCc-cCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccCCceeeeeE
Confidence 55555432111110 1111235666666654444 344555689999999999876655532 1 1247899
Q ss_pred EecCCccch
Q 003363 700 AARNPLCNL 708 (826)
Q Consensus 700 v~~~p~~~~ 708 (826)
++.+|+++.
T Consensus 206 ~igng~td~ 214 (437)
T PLN02209 206 VLGNPITHI 214 (437)
T ss_pred EecCcccCh
Confidence 999998764
|
|
| >TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2 | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.51 Score=51.32 Aligned_cols=124 Identities=19% Similarity=0.226 Sum_probs=78.5
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcE-EEEECCCCCCCCchhhhhcCCCCCCc
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYS-LLIVNYRGSLGFGEEALQSLPGKVGS 649 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~-Vl~~d~rG~~g~G~~~~~~~~~~~~~ 649 (826)
..+.++- +++.| ++-+.|+.|+.-|.-.. .+|.. .-.+...|.- .+.-|.|-.+| +| -.|.
T Consensus 273 ~~reEi~-yYFnP----GD~KPPL~VYFSGyR~a---EGFEg-y~MMk~Lg~PfLL~~DpRleGG---aF------YlGs 334 (511)
T TIGR03712 273 SKRQEFI-YYFNP----GDFKPPLNVYFSGYRPA---EGFEG-YFMMKRLGAPFLLIGDPRLEGG---AF------YLGS 334 (511)
T ss_pred CCCCeeE-EecCC----cCCCCCeEEeeccCccc---Ccchh-HHHHHhcCCCeEEeeccccccc---ee------eeCc
Confidence 3345553 34445 45677999999884322 23321 1233455654 45668887443 32 1222
Q ss_pred chH-HHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC
Q 003363 650 QDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 714 (826)
Q Consensus 650 ~~~-~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~ 714 (826)
.+. +.+...|+..++.-..+.+.+.|.|-|||.+-|+.++++. ...|+|+.-|++++-.+...
T Consensus 335 ~eyE~~I~~~I~~~L~~LgF~~~qLILSGlSMGTfgAlYYga~l--~P~AIiVgKPL~NLGtiA~n 398 (511)
T TIGR03712 335 DEYEQGIINVIQEKLDYLGFDHDQLILSGLSMGTFGALYYGAKL--SPHAIIVGKPLVNLGTIASR 398 (511)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHeeeccccccchhhhhhcccC--CCceEEEcCcccchhhhhcc
Confidence 223 2355666655555457889999999999999999998864 35788999999988666543
|
This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.61 E-value=1 Score=49.30 Aligned_cols=113 Identities=10% Similarity=-0.031 Sum_probs=63.6
Q ss_pred CccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCc--
Q 003363 295 LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS-- 372 (826)
Q Consensus 295 ~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~-- 372 (826)
..+..+.|+-||-. ++... ..+.+|++|+ .+.++-.+-.+.+
T Consensus 229 ~svTal~F~d~gL~----~aVGt---------------s~G~v~iyDL-----------------Ra~~pl~~kdh~~e~ 272 (703)
T KOG2321|consen 229 PSVTALKFRDDGLH----VAVGT---------------STGSVLIYDL-----------------RASKPLLVKDHGYEL 272 (703)
T ss_pred CcceEEEecCCcee----EEeec---------------cCCcEEEEEc-----------------ccCCceeecccCCcc
Confidence 35778899999877 76654 4458999998 4444444443322
Q ss_pred cccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccc
Q 003363 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 452 (826)
Q Consensus 373 ~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws 452 (826)
.+....|-+.++.=..++.+. .-|.+||-.+|....... +...+..+|+-
T Consensus 273 pi~~l~~~~~~~q~~v~S~Dk----------~~~kiWd~~~Gk~~asiE--------------------pt~~lND~C~~ 322 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQNKVVSMDK----------RILKIWDECTGKPMASIE--------------------PTSDLNDFCFV 322 (703)
T ss_pred ceeeecccccCCCceEEecch----------HHhhhcccccCCceeecc--------------------ccCCcCceeee
Confidence 244455544322222233332 235667766665421110 11235577888
Q ss_pred cCCCEEEEEEEeCCeEEEEEEE
Q 003363 453 SDGCTMLLSSIWGSSQVIISVN 474 (826)
Q Consensus 453 ~Dg~~l~~~~~~~~~~~l~~vd 474 (826)
|++- ++|.+...+....|.+.
T Consensus 323 p~sG-m~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 323 PGSG-MFFTANESSKMHTYYIP 343 (703)
T ss_pred cCCc-eEEEecCCCcceeEEcc
Confidence 8876 66776666666666654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.74 Score=51.11 Aligned_cols=47 Identities=17% Similarity=0.376 Sum_probs=27.0
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDET 220 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~ 220 (826)
....+++|+|+.++...+++ |.+......+.... ..+ ..+.|+++++
T Consensus 35 p~~ls~npngr~v~V~g~ge------Y~iyt~~~~r~k~~-G~g-----------~~~vw~~~n~ 81 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCGDGE------YEIYTALAWRNKAF-GSG-----------LSFVWSSRNR 81 (443)
T ss_dssp -SEEEE-TTSSEEEEEETTE------EEEEETTTTEEEEE-EE------------SEEEE-TSSE
T ss_pred CeeEEECCCCCEEEEEcCCE------EEEEEccCCccccc-Cce-----------eEEEEecCcc
Confidence 56789999999999865543 66664322222222 122 4788999776
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.12 Score=56.76 Aligned_cols=135 Identities=19% Similarity=0.207 Sum_probs=80.3
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHH---------HH------HCCcEEEEECCCCCCCC
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAF---------LS------SVGYSLLIVNYRGSLGF 635 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~---------la------~~G~~Vl~~d~rG~~g~ 635 (826)
..+..+..|++.... .....|+||++-|||+.+...+.....-- |. .+-..++-+|-+-..||
T Consensus 54 ~~~~~LFYwf~eS~~--~P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiLfLd~PvGvGF 131 (454)
T KOG1282|consen 54 SEGRQLFYWFFESEN--NPETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEANILFLDQPVGVGF 131 (454)
T ss_pred CCCceEEEEEEEccC--CCCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccccccEEEEecCCcCCc
Confidence 356789989887652 45668999999999987533221110000 00 01135667776644445
Q ss_pred chhhhhcCCCCCCc-chHHHHHHH-HHHHHHcCCCCCCcEEEEEecchHHHHHHHHH----hC-----C-CceeEEEecC
Q 003363 636 GEEALQSLPGKVGS-QDVNDVLTA-IDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG----QA-----P-DKFVAAAARN 703 (826)
Q Consensus 636 G~~~~~~~~~~~~~-~~~~D~~~~-i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~----~~-----p-~~~~a~v~~~ 703 (826)
.-+-...... .++ ...+|...+ .+|+.+.+..-.+.+.|.|.|++|..+-.+|. .. | --+++.++.+
T Consensus 132 SYs~~~~~~~-~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLkG~~IGN 210 (454)
T KOG1282|consen 132 SYSNTSSDYK-TGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLKGYAIGN 210 (454)
T ss_pred cccCCCCcCc-CCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccceEEEecC
Confidence 3322111111 121 235665554 45777667677788999999999976655543 21 1 2589999999
Q ss_pred Cccch
Q 003363 704 PLCNL 708 (826)
Q Consensus 704 p~~~~ 708 (826)
|+.+.
T Consensus 211 g~td~ 215 (454)
T KOG1282|consen 211 GLTDP 215 (454)
T ss_pred cccCc
Confidence 98764
|
|
| >COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.043 Score=58.83 Aligned_cols=99 Identities=17% Similarity=0.236 Sum_probs=66.2
Q ss_pred EEEEEcCCCCCCCCccchHHHHHHHHCCcE---EEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYS---LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~---Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
.++++||.... ...+......++..|+. +..+++.+.... .......+.+.+-++.+.... ..
T Consensus 61 pivlVhG~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----------~~~~~~~~ql~~~V~~~l~~~--ga 126 (336)
T COG1075 61 PIVLVHGLGGG--YGNFLPLDYRLAILGWLTNGVYAFELSGGDGT----------YSLAVRGEQLFAYVDEVLAKT--GA 126 (336)
T ss_pred eEEEEccCcCC--cchhhhhhhhhcchHHHhcccccccccccCCC----------ccccccHHHHHHHHHHHHhhc--CC
Confidence 58889996332 34555555567777777 777777753111 111122455556566555542 34
Q ss_pred CcEEEEEecchHHHHHHHHHhCC--CceeEEEecCCcc
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAP--DKFVAAAARNPLC 706 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p--~~~~a~v~~~p~~ 706 (826)
.+|.++|||+||..+.+++...+ .+++.++..++.-
T Consensus 127 ~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp~ 164 (336)
T COG1075 127 KKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTPH 164 (336)
T ss_pred CceEEEeecccchhhHHHHhhcCccceEEEEEEeccCC
Confidence 78999999999999999988887 7888888777643
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.36 Score=50.02 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=75.6
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEe-cc
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA-VK 289 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~-l~ 289 (826)
.++.|||.++.+++.+.- ...|.+||+..+.-+. +.
T Consensus 261 EDLqWSptE~~vfaScS~-------------------------------------------DgsIrIWDiRs~~~~~~~~ 297 (440)
T KOG0302|consen 261 EDLQWSPTEDGVFASCSC-------------------------------------------DGSIRIWDIRSGPKKAAVS 297 (440)
T ss_pred hhhccCCccCceEEeeec-------------------------------------------CceEEEEEecCCCccceeE
Confidence 899999999988887543 3678899988773221 11
Q ss_pred CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCC-cceecC
Q 003363 290 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLT 368 (826)
Q Consensus 290 ~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~Lt 368 (826)
-......+.-++|+-+-.. |++.+ .+..+-++|+.. ...+ .+....
T Consensus 298 ~kAh~sDVNVISWnr~~~l----LasG~---------------DdGt~~iwDLR~--------------~~~~~pVA~fk 344 (440)
T KOG0302|consen 298 TKAHNSDVNVISWNRREPL----LASGG---------------DDGTLSIWDLRQ--------------FKSGQPVATFK 344 (440)
T ss_pred eeccCCceeeEEccCCcce----eeecC---------------CCceEEEEEhhh--------------ccCCCcceeEE
Confidence 0223335666789887776 77665 223677777731 1223 334555
Q ss_pred CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 369 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 369 ~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
.+...+.+..|+|....++-.+..+ ++|.+||+..
T Consensus 345 ~Hk~pItsieW~p~e~s~iaasg~D----------~QitiWDlsv 379 (440)
T KOG0302|consen 345 YHKAPITSIEWHPHEDSVIAASGED----------NQITIWDLSV 379 (440)
T ss_pred eccCCeeEEEeccccCceEEeccCC----------CcEEEEEeec
Confidence 6777899999999776665555433 5677787754
|
|
| >KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.035 Score=60.37 Aligned_cols=91 Identities=22% Similarity=0.266 Sum_probs=65.2
Q ss_pred CCCCcEEEEEcCCCCCCCCc-cchHHH-HHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcC
Q 003363 589 CSCDPLIVVLHGGPHSVSLS-SYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 666 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~-~~~~~~-~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 666 (826)
....-+|+.+|||++..... .-..+. ++..+.|.-|+.+||...++ ...+...+++.-|.-|++++.
T Consensus 393 p~S~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLAPE-----------aPFPRaleEv~fAYcW~inn~ 461 (880)
T KOG4388|consen 393 PRSRSLIVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLAPE-----------APFPRALEEVFFAYCWAINNC 461 (880)
T ss_pred CCCceEEEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccCCC-----------CCCCcHHHHHHHHHHHHhcCH
Confidence 34556899999988754322 222233 34457799999999987543 344556899999999999863
Q ss_pred C---CCCCcEEEEEecchHHHHHHHHH
Q 003363 667 L---ANPSKVTVVGGSHGGFLTTHLIG 690 (826)
Q Consensus 667 ~---~d~~rv~l~G~S~GG~~a~~~a~ 690 (826)
. .-.+||++.|.|.||.+.+-++.
T Consensus 462 allG~TgEriv~aGDSAGgNL~~~VaL 488 (880)
T KOG4388|consen 462 ALLGSTGERIVLAGDSAGGNLCFTVAL 488 (880)
T ss_pred HHhCcccceEEEeccCCCcceeehhHH
Confidence 2 34689999999999998765554
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.53 E-value=2.3 Score=43.17 Aligned_cols=59 Identities=17% Similarity=0.280 Sum_probs=42.8
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEE
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIA 223 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia 223 (826)
..++...|+||-+.|..+-+ ...++.++...|+..+.+.+.. .++. +++.|.-+|+.++
T Consensus 86 ~nvS~LTynp~~rtLFav~n---~p~~iVElt~~GdlirtiPL~g-~~Dp-------E~Ieyig~n~fvi 144 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTN---KPAAIVELTKEGDLIRTIPLTG-FSDP-------ETIEYIGGNQFVI 144 (316)
T ss_pred ccccceeeCCCcceEEEecC---CCceEEEEecCCceEEEecccc-cCCh-------hHeEEecCCEEEE
Confidence 45899999999999976644 4567889998888888877653 2211 5778887776443
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.48 E-value=3.4 Score=42.04 Aligned_cols=104 Identities=16% Similarity=0.197 Sum_probs=64.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
.+++...|||.+..|+..+= ++.-.+|.+... ..+..+...... ....|.++. .+++..
T Consensus 14 d~IS~v~f~~~~~~LLvssW--DgslrlYdv~~~-~l~~~~~~~~pl----------L~c~F~d~~-~~~~G~------- 72 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSW--DGSLRLYDVPAN-SLKLKFKHGAPL----------LDCAFADES-TIVTGG------- 72 (323)
T ss_pred hceeeEEEcCcCCcEEEEec--cCcEEEEeccch-hhhhheecCCce----------eeeeccCCc-eEEEec-------
Confidence 46899999999999987662 344444444422 233333222222 566676643 455432
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (826)
-+..|.++|+.+++...+ -.+...+..+..++-... +
T Consensus 73 -------------------------------------~dg~vr~~Dln~~~~~~i--gth~~~i~ci~~~~~~~~----v 109 (323)
T KOG1036|consen 73 -------------------------------------LDGQVRRYDLNTGNEDQI--GTHDEGIRCIEYSYEVGC----V 109 (323)
T ss_pred -------------------------------------cCceEEEEEecCCcceee--ccCCCceEEEEeeccCCe----E
Confidence 346788999999988887 455556667777775555 7
Q ss_pred EEEeecCc
Q 003363 314 VFVGWSSE 321 (826)
Q Consensus 314 vf~~~~~~ 321 (826)
+-.+|+..
T Consensus 110 IsgsWD~~ 117 (323)
T KOG1036|consen 110 ISGSWDKT 117 (323)
T ss_pred EEcccCcc
Confidence 77777654
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.12 Score=57.62 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=33.8
Q ss_pred cCceEEEEEccCCc-eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCc
Q 003363 271 RQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 321 (826)
Q Consensus 271 ~~~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~ 321 (826)
..+.+.||+++.-. +..+ ......+..++|||.+++ |+.++...+
T Consensus 100 ~~pa~kVw~la~h~vVAEf--vdHKY~vtcvaFsp~~ky----vvSVGsQHD 145 (1080)
T KOG1408|consen 100 RTPASKVWSLAFHGVVAEF--VDHKYNVTCVAFSPGNKY----VVSVGSQHD 145 (1080)
T ss_pred CCccceeeeeccccchhhh--hhccccceeeeecCCCcE----EEeeccccc
Confidence 35788999998644 3344 566678899999999999 998885444
|
|
| >KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.068 Score=60.62 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHcC----CCC---CCcEEEEEecchHHHHHHHHHhCCCcee
Q 003363 651 DVNDVLTAIDHVIDMG----LAN---PSKVTVVGGSHGGFLTTHLIGQAPDKFV 697 (826)
Q Consensus 651 ~~~D~~~~i~~l~~~~----~~d---~~rv~l~G~S~GG~~a~~~a~~~p~~~~ 697 (826)
..+-+.+||+++.+.. ..+ |..|.|+||||||.+|..++.. |...+
T Consensus 155 QtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tl-kn~~~ 207 (973)
T KOG3724|consen 155 QTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTL-KNEVQ 207 (973)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhh-hhhcc
Confidence 3555677777777642 223 6679999999999998877663 44333
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.076 Score=59.24 Aligned_cols=179 Identities=13% Similarity=0.085 Sum_probs=99.8
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCC
Q 003363 109 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS 188 (826)
Q Consensus 109 ~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~ 188 (826)
+.|.|...+.-++++.....|.+|++. .....+.|+..- .....+.|+|-|.+.|--+.. .=+.+|+..
T Consensus 74 eSl~f~~~E~LlaagsasgtiK~wDle-eAk~vrtLtgh~-----~~~~sv~f~P~~~~~a~gStd-----td~~iwD~R 142 (825)
T KOG0267|consen 74 ESLTFDTSERLLAAGSASGTIKVWDLE-EAKIVRTLTGHL-----LNITSVDFHPYGEFFASGSTD-----TDLKIWDIR 142 (825)
T ss_pred eeeecCcchhhhcccccCCceeeeehh-hhhhhhhhhccc-----cCcceeeeccceEEecccccc-----ccceehhhh
Confidence 345566667777788888889999985 333445555443 345667799999988543322 235666432
Q ss_pred ceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCC
Q 003363 189 QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYA 268 (826)
Q Consensus 189 ~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~ 268 (826)
...-.... .+..+.+ ..++|+|||++++-..++...+ .|+...++..+.++.+..-....++.+.---+..
T Consensus 143 k~Gc~~~~-~s~~~vv------~~l~lsP~Gr~v~~g~ed~tvk--i~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~ 213 (825)
T KOG0267|consen 143 KKGCSHTY-KSHTRVV------DVLRLSPDGRWVASGGEDNTVK--IWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAP 213 (825)
T ss_pred ccCceeee-cCCccee------EEEeecCCCceeeccCCcceee--eecccccccccccccccccccccccCchhhhhcc
Confidence 11111111 1121222 6789999999999887755443 4443333333333333222222223332111223
Q ss_pred CccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCC
Q 003363 269 GKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308 (826)
Q Consensus 269 ~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~ 308 (826)
+..+..+-+||+++=++..- +-+....+....|.|||+.
T Consensus 214 Gs~d~tv~f~dletfe~I~s-~~~~~~~v~~~~fn~~~~~ 252 (825)
T KOG0267|consen 214 GSSDRTVRFWDLETFEVISS-GKPETDGVRSLAFNPDGKI 252 (825)
T ss_pred CCCCceeeeeccceeEEeec-cCCccCCceeeeecCCcee
Confidence 44567788899876544322 1233456778899999994
|
|
| >PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.045 Score=54.73 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=18.1
Q ss_pred CCcEEEEEecchHHHHHHHHH
Q 003363 670 PSKVTVVGGSHGGFLTTHLIG 690 (826)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~a~ 690 (826)
..+|.++|||+||.++-.++.
T Consensus 77 ~~~IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALG 97 (217)
T ss_pred cccceEEEecccHHHHHHHHH
Confidence 358999999999999987765
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.94 E-value=4.4 Score=44.06 Aligned_cols=143 Identities=17% Similarity=0.239 Sum_probs=74.6
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
..+.+|++.+++..... ......+..+.|+|+++. ++.... ....|..+|.
T Consensus 178 ~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~----~~~~~~--------------~d~~i~~wd~---------- 228 (466)
T COG2319 178 GTIKLWDLRTGKPLSTL-AGHTDPVSSLAFSPDGGL----LIASGS--------------SDGTIRLWDL---------- 228 (466)
T ss_pred CceEEEEcCCCceEEee-ccCCCceEEEEEcCCcce----EEEEec--------------CCCcEEEEEC----------
Confidence 56888888765544431 223456778899999984 444421 1123444465
Q ss_pred hhhcCCCCCCccee--cCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeee
Q 003363 353 ELKESSSEDLPVVN--LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (826)
Q Consensus 353 ~~~~~~~~~~~~~~--Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 430 (826)
..+.... +..+.... ...|+|++..++..+. ...+.+++....... +...
T Consensus 229 -------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------d~~~~~~~~~~~~~~--------~~~~- 280 (466)
T COG2319 229 -------STGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS-----------DGTIRLWDLRSSSSL--------LRTL- 280 (466)
T ss_pred -------CCCcEEeeecCCCCcce-eEeECCCCCEEEEecC-----------CCcEEEeeecCCCcE--------EEEE-
Confidence 3233322 33333332 2389999966652222 245777776654430 0000
Q ss_pred eccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003363 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (826)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt 484 (826)
... ...+....|.|++..++. ...++...+| |..++......
T Consensus 281 -~~~--------~~~v~~~~~~~~~~~~~~-~~~d~~~~~~--~~~~~~~~~~~ 322 (466)
T COG2319 281 -SGH--------SSSVLSVAFSPDGKLLAS-GSSDGTVRLW--DLETGKLLSSL 322 (466)
T ss_pred -ecC--------CccEEEEEECCCCCEEEE-eeCCCcEEEE--EcCCCceEEEe
Confidence 000 112334578888876666 4444444555 77666544443
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=2.6 Score=48.21 Aligned_cols=89 Identities=16% Similarity=0.190 Sum_probs=52.2
Q ss_pred cccCceecCCCCEEEEEeccCCCCCCCCcccceEEE--EeCCCCCC-CCcccceeeeeeeeeccCCCCCcccccCCCCCC
Q 003363 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR--IDWPTNGN-FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 449 (826)
Q Consensus 373 ~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~--~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 449 (826)
.+...+.|+||.+++.+...+ +..+|++ +--..++. +.++.. ..+. .......+
T Consensus 435 ~I~~lrvSrDG~R~Avi~~~~--------g~~~V~va~V~R~~~G~P~~L~~~----~~~~-----------~~~~~~sl 491 (573)
T PRK13614 435 TVKELRVSREGVRALVISEQN--------GKSRVQVAGIVRNEDGTPRELTAP----ITLA-----------ADSDADTG 491 (573)
T ss_pred eeEEEEECCCccEEEEEEEeC--------CccEEEEEEEEeCCCCCeEEccCc----eecc-----------cCCCccee
Confidence 378899999999999998654 2334555 32222222 333211 1110 01134578
Q ss_pred ccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003363 450 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (826)
Q Consensus 450 ~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt 484 (826)
.|..|+..++.+....++...+.+.+..|..+.+.
T Consensus 492 ~W~~~~sl~V~~~~~~~~~~~~~v~v~~g~~~~l~ 526 (573)
T PRK13614 492 AWVGDSTVVVTKASATSNVVPELLSVDAGQPQQLA 526 (573)
T ss_pred EEcCCCEEEEEeccCCCcceEEEEEeCCCCcccCC
Confidence 89988875555444456667788888666655444
|
|
| >PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.042 Score=54.86 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCC----CceeEEEecCC
Q 003363 656 LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP----DKFVAAAARNP 704 (826)
Q Consensus 656 ~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p----~~~~a~v~~~p 704 (826)
..|++++.+...-.+++|.+.|||.||.+|..+++..+ +++..+....+
T Consensus 69 ~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDg 121 (224)
T PF11187_consen 69 KSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDG 121 (224)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeC
Confidence 44555554431112346999999999999999988743 46666665544
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.89 Score=46.27 Aligned_cols=67 Identities=21% Similarity=0.228 Sum_probs=44.1
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCC---cceec
Q 003363 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL---PVVNL 367 (826)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~L 367 (826)
...+..+..+.|+|.+.+ |+-.+- +|+ -|++..+ .++ ..-.|
T Consensus 52 s~Hd~~vtgvdWap~snr----Ivtcs~-------------drn--ayVw~~~----------------~~~~WkptlvL 96 (361)
T KOG1523|consen 52 SEHDKIVTGVDWAPKSNR----IVTCSH-------------DRN--AYVWTQP----------------SGGTWKPTLVL 96 (361)
T ss_pred hhhCcceeEEeecCCCCc----eeEccC-------------CCC--ccccccC----------------CCCeeccceeE
Confidence 344557778999999998 988762 232 3333331 222 22344
Q ss_pred CCCCccccCceecCCCCEEEEEecc
Q 003363 368 TESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 368 t~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
-..++.+....|||.++++|..+..
T Consensus 97 lRiNrAAt~V~WsP~enkFAVgSga 121 (361)
T KOG1523|consen 97 LRINRAATCVKWSPKENKFAVGSGA 121 (361)
T ss_pred EEeccceeeEeecCcCceEEeccCc
Confidence 4557788999999999999876643
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.76 E-value=3.6 Score=43.82 Aligned_cols=145 Identities=12% Similarity=0.093 Sum_probs=83.7
Q ss_pred cCceEEEEEccCCceEeccCCC-CCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchh
Q 003363 271 RQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 349 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~-~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 349 (826)
....+.+||+++|++... +. ..-.+..+.|.|..-. +...+. ....+.+.|....
T Consensus 264 aD~TV~lWD~~~g~p~~s--~~~~~k~Vq~l~wh~~~p~----~LLsGs--------------~D~~V~l~D~R~~---- 319 (463)
T KOG0270|consen 264 ADKTVKLWDVDTGKPKSS--ITHHGKKVQTLEWHPYEPS----VLLSGS--------------YDGTVALKDCRDP---- 319 (463)
T ss_pred CCceEEEEEcCCCCccee--hhhcCCceeEEEecCCCce----EEEecc--------------ccceEEeeeccCc----
Confidence 457899999999999887 44 3446788999998776 555551 2235556665210
Q ss_pred hhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeee
Q 003363 350 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (826)
Q Consensus 350 ~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 429 (826)
...+..-+. .+.+....|.|-....+|.+.++ ..|+-+|....+.- +
T Consensus 320 ---------~~s~~~wk~---~g~VEkv~w~~~se~~f~~~tdd----------G~v~~~D~R~~~~~-----------v 366 (463)
T KOG0270|consen 320 ---------SNSGKEWKF---DGEVEKVAWDPHSENSFFVSTDD----------GTVYYFDIRNPGKP-----------V 366 (463)
T ss_pred ---------cccCceEEe---ccceEEEEecCCCceeEEEecCC----------ceEEeeecCCCCCc-----------e
Confidence 012222222 23455667777766666666554 45888887654321 1
Q ss_pred eeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc
Q 003363 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 479 (826)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~ 479 (826)
|... .+...+..++.++.-..++.+........||.++....+
T Consensus 367 wt~~-------AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 367 WTLK-------AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred eEEE-------eccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 1100 022244455555555556666555566677877765543
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.41 E-value=2 Score=47.28 Aligned_cols=100 Identities=20% Similarity=0.204 Sum_probs=63.6
Q ss_pred CccCceEEEEEccCCceEeccCCCC-CCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccc
Q 003363 269 GKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (826)
Q Consensus 269 ~~~~~~l~v~d~~~g~~~~l~~~~~-~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (826)
+.....++++++.+|+++.-..+.. ...+....|+.+-.. |+.++ .++.+..++.
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~c----iyS~~---------------ad~~v~~~~~----- 131 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGC----IYSVG---------------ADLKVVYILE----- 131 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCc----eEecC---------------CceeEEEEec-----
Confidence 3356789999999998875421122 235556677776665 55444 3335666665
Q ss_pred hhhhhhhhcCCCCCCcceecCC-CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCC
Q 003363 348 EASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (826)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~ 417 (826)
..+...+... ......+...||||+.|+..+ .+|.++|..+++..
T Consensus 132 ------------~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-------------~~ik~~~~~~kevv 177 (541)
T KOG4547|consen 132 ------------KEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-------------RQIKVLDIETKEVV 177 (541)
T ss_pred ------------ccceeeeeeccCCCccceEEEcCCCCEEEecc-------------ceEEEEEccCceEE
Confidence 4444444433 234567889999999887444 45899998886653
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.41 E-value=3.5 Score=45.65 Aligned_cols=96 Identities=15% Similarity=0.102 Sum_probs=59.2
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhh
Q 003363 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (826)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (826)
...+++.++.-...+.-. ......+..+.|.|.--+ ++..+ . ..+.++|+.
T Consensus 545 ~~~VliHQLSK~~sQ~PF-~kskG~vq~v~FHPs~p~----lfVaT-----q-----------~~vRiYdL~-------- 595 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPF-RKSKGLVQRVKFHPSKPY----LFVAT-----Q-----------RSVRIYDLS-------- 595 (733)
T ss_pred cceEEEEecccccccCch-hhcCCceeEEEecCCCce----EEEEe-----c-----------cceEEEehh--------
Confidence 356777777554433110 112335567889997776 54443 1 157788872
Q ss_pred hhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 352 LELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
....++.|-.+...+.+.+.+|.|..|+..+.+ ..+..+|++-+.
T Consensus 596 --------kqelvKkL~tg~kwiS~msihp~GDnli~gs~d-----------~k~~WfDldlss 640 (733)
T KOG0650|consen 596 --------KQELVKKLLTGSKWISSMSIHPNGDNLILGSYD-----------KKMCWFDLDLSS 640 (733)
T ss_pred --------HHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC-----------CeeEEEEcccCc
Confidence 212245565566667888999999999877765 357788877543
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.38 E-value=2.5 Score=46.54 Aligned_cols=116 Identities=11% Similarity=0.091 Sum_probs=59.0
Q ss_pred cccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccc
Q 003363 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 452 (826)
Q Consensus 373 ~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws 452 (826)
.++...|+-||=.++..... .+++++|+.+.....+- .. . |..-+..+.|.
T Consensus 230 svTal~F~d~gL~~aVGts~-----------G~v~iyDLRa~~pl~~k-dh-----------~------~e~pi~~l~~~ 280 (703)
T KOG2321|consen 230 SVTALKFRDDGLHVAVGTST-----------GSVLIYDLRASKPLLVK-DH-----------G------YELPIKKLDWQ 280 (703)
T ss_pred cceEEEecCCceeEEeeccC-----------CcEEEEEcccCCceeec-cc-----------C------Cccceeeeccc
Confidence 36778898888877755543 46999999886653221 11 1 22223456675
Q ss_pred cC-CCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 003363 453 SD-GCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 453 ~D-g~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 521 (826)
+. ++.-+++.+ . ..+-.||..+|+.-.......++...-+-++++ ++|++....--...|+-++.
T Consensus 281 ~~~~q~~v~S~D-k--~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sG-m~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 281 DTDQQNKVVSMD-K--RILKIWDECTGKPMASIEPTSDLNDFCFVPGSG-MFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred ccCCCceEEecc-h--HHhhhcccccCCceeeccccCCcCceeeecCCc-eEEEecCCCcceeEEccccC
Confidence 43 222333322 2 233445666777554433333333334455555 44444333333335554544
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.35 E-value=7 Score=39.98 Aligned_cols=83 Identities=14% Similarity=0.130 Sum_probs=49.9
Q ss_pred CceEEEEEccCCc-eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 272 QPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 272 ~~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
+.+|.+|+...=+ +..+ .+....+.+++..|.|| |+..-. ++..|..+|+
T Consensus 106 DG~i~iw~~~~W~~~~sl--K~H~~~Vt~lsiHPS~K-----LALsVg--------------~D~~lr~WNL-------- 156 (362)
T KOG0294|consen 106 DGHIIIWRVGSWELLKSL--KAHKGQVTDLSIHPSGK-----LALSVG--------------GDQVLRTWNL-------- 156 (362)
T ss_pred CCcEEEEEcCCeEEeeee--cccccccceeEecCCCc-----eEEEEc--------------CCceeeeehh--------
Confidence 3678888865432 2233 23333588999999999 555431 3336777777
Q ss_pred hhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
..|..-.+..-........|+|.|.+++....+
T Consensus 157 ---------V~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 157 ---------VRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred ---------hcCccceeeccCCcceeeEEcCCCCEEEEEecc
Confidence 444333222222334559999999988766544
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.14 E-value=2.2 Score=48.64 Aligned_cols=149 Identities=13% Similarity=0.046 Sum_probs=78.7
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (826)
.++.+..-+.+|+-.+.+.+.+. |+...+........+..-..- ....-.....+..+..|.||++++++...+.+
T Consensus 253 ~~l~~~~~~~~lvsgS~D~t~rv--Wd~~sg~C~~~l~gh~stv~~--~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~ 328 (537)
T KOG0274|consen 253 WGLAFPSGGDKLVSGSTDKTERV--WDCSTGECTHSLQGHTSSVRC--LTIDPFLLVSGSRDNTVKVWDVTNGACLNLLR 328 (537)
T ss_pred eeEEEecCCCEEEEEecCCcEEe--EecCCCcEEEEecCCCceEEE--EEccCceEeeccCCceEEEEeccCcceEEEec
Confidence 67777665556666666766553 333223322222222221110 01110112234577899999999998777731
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCC
Q 003363 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTE 369 (826)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~ 369 (826)
.....+..+... +.. ++..+ ++ ..|-++|+ .+++ ...|+.
T Consensus 329 -~h~~~V~~v~~~--~~~----lvsgs-------------~d--~~v~VW~~-----------------~~~~cl~sl~g 369 (537)
T KOG0274|consen 329 -GHTGPVNCVQLD--EPL----LVSGS-------------YD--GTVKVWDP-----------------RTGKCLKSLSG 369 (537)
T ss_pred -cccccEEEEEec--CCE----EEEEe-------------cC--ceEEEEEh-----------------hhceeeeeecC
Confidence 134455555555 554 44444 11 25667776 4444 456677
Q ss_pred CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCC
Q 003363 370 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (826)
Q Consensus 370 ~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~ 414 (826)
+.+.+....+... ..++-.+.+ ..|.+||+.+.
T Consensus 370 H~~~V~sl~~~~~-~~~~Sgs~D-----------~~IkvWdl~~~ 402 (537)
T KOG0274|consen 370 HTGRVYSLIVDSE-NRLLSGSLD-----------TTIKVWDLRTK 402 (537)
T ss_pred CcceEEEEEecCc-ceEEeeeec-----------cceEeecCCch
Confidence 7766666655433 555444433 34777777776
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.13 E-value=1 Score=51.86 Aligned_cols=94 Identities=19% Similarity=0.291 Sum_probs=60.9
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCC-ceeEE--EecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQS-QLEKE--FHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~-~~~~~--~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
....++||.|+++|.....+ .+.+| +-+ ..... +.+ .=.|..| .+++||+||..|+...
T Consensus 208 ~t~~~~spn~~~~Aa~d~dG-----rI~vw~d~~~~~~~~t~t~l-HWH~~~V------~~L~fS~~G~~LlSGG----- 270 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDG-----RILVWRDFGSSDDSETCTLL-HWHHDEV------NSLSFSSDGAYLLSGG----- 270 (792)
T ss_pred ceeEEeccccceEEEeccCC-----cEEEEeccccccccccceEE-Eeccccc------ceeEEecCCceEeecc-----
Confidence 45689999999998754332 35677 322 11111 111 1122333 7999999999887642
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCC-CCccceEEEeeCCCC
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEG 308 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~-~~~~~~~~wSPDg~~ 308 (826)
....|.+|.+++++.+-| |. ...+.+++||||+..
T Consensus 271 ---------------------------------------~E~VLv~Wq~~T~~kqfL---PRLgs~I~~i~vS~ds~~ 306 (792)
T KOG1963|consen 271 ---------------------------------------REGVLVLWQLETGKKQFL---PRLGSPILHIVVSPDSDL 306 (792)
T ss_pred ---------------------------------------cceEEEEEeecCCCcccc---cccCCeeEEEEEcCCCCe
Confidence 336799999999994444 43 346778999999996
|
|
| >PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2 | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.18 Score=55.29 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=55.2
Q ss_pred cchHHHHHHHHCCcEE-----EE-ECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchH
Q 003363 609 SYSKSLAFLSSVGYSL-----LI-VNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG 682 (826)
Q Consensus 609 ~~~~~~~~la~~G~~V-----l~-~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG 682 (826)
.|...++.|.+.||.. .+ .|.|-+.. ....-...+...|+.+.+.. ..+|.|+||||||
T Consensus 66 ~~~~li~~L~~~GY~~~~~l~~~pYDWR~~~~------------~~~~~~~~lk~~ie~~~~~~---~~kv~li~HSmGg 130 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRGKDLFAAPYDWRLSPA------------ERDEYFTKLKQLIEEAYKKN---GKKVVLIAHSMGG 130 (389)
T ss_pred hHHHHHHHHHhcCcccCCEEEEEeechhhchh------------hHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCCCc
Confidence 5778899999988853 22 56665321 00112455556666655542 5799999999999
Q ss_pred HHHHHHHHhCCC------ceeEEEecCCc
Q 003363 683 FLTTHLIGQAPD------KFVAAAARNPL 705 (826)
Q Consensus 683 ~~a~~~a~~~p~------~~~a~v~~~p~ 705 (826)
.++..++...+. .+++.|.+++.
T Consensus 131 l~~~~fl~~~~~~~W~~~~i~~~i~i~~p 159 (389)
T PF02450_consen 131 LVARYFLQWMPQEEWKDKYIKRFISIGTP 159 (389)
T ss_pred hHHHHHHHhccchhhHHhhhhEEEEeCCC
Confidence 999998887643 47788877763
|
3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process |
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=94.05 E-value=1.9 Score=48.03 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=25.8
Q ss_pred CceEEEEEccCCceEecc-CCCCCCccceEEEeeCCCC
Q 003363 272 QPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEG 308 (826)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~-~~~~~~~~~~~~wSPDg~~ 308 (826)
+..+..||+++++.+-.. -......+-+++|.|+...
T Consensus 121 DsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~ 158 (720)
T KOG0321|consen 121 DSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPA 158 (720)
T ss_pred CceeeeeeeccceeecceeecccccccchhhhccCCCc
Confidence 467889999888765431 0233446778999999985
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.22 Score=55.84 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=61.1
Q ss_pred ceEEEEEccCCc-eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhh
Q 003363 273 PSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (826)
Q Consensus 273 ~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (826)
..|.+||++.++ ++.| +.....+..+.|+|=|.+ . .+|. .++++..+|..
T Consensus 92 gtiK~wDleeAk~vrtL--tgh~~~~~sv~f~P~~~~----~--a~gS-------------tdtd~~iwD~R-------- 142 (825)
T KOG0267|consen 92 GTIKVWDLEEAKIVRTL--TGHLLNITSVDFHPYGEF----F--ASGS-------------TDTDLKIWDIR-------- 142 (825)
T ss_pred Cceeeeehhhhhhhhhh--hccccCcceeeeccceEE----e--cccc-------------ccccceehhhh--------
Confidence 579999998776 5556 444556678889998776 3 3332 23466677762
Q ss_pred hhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 352 LELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
.-|-...--.+.+.....+|+|||++++-... ...+.+||+..|+.
T Consensus 143 --------k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-----------d~tvki~d~~agk~ 188 (825)
T KOG0267|consen 143 --------KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-----------DNTVKIWDLTAGKL 188 (825)
T ss_pred --------ccCceeeecCCcceeEEEeecCCCceeeccCC-----------cceeeeeccccccc
Confidence 12323333335566778899999998863332 25677888766554
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.92 E-value=2.2 Score=48.06 Aligned_cols=96 Identities=18% Similarity=0.172 Sum_probs=67.3
Q ss_pred cCceEEEEEccCCceEec-cCCCCC-CccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccch
Q 003363 271 RQPSLFVININSGEVQAV-KGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 348 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l-~~~~~~-~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 348 (826)
.+.+|-++|+++|+.+.. +|.-++ ...--+..-|.|-+ |+-.. .++ .|..+|.
T Consensus 616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY----~atSc-------------sdk--tl~~~Df------ 670 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIY----LATSC-------------SDK--TLCFVDF------ 670 (1080)
T ss_pred cccceEEEeccccceeeeecccccCCCceEEEEECCCccE----EEEee-------------cCC--ceEEEEe------
Confidence 446788899999887666 222221 23334567777766 65543 333 7888998
Q ss_pred hhhhhhhcCCCCCCcc-eecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 349 ASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 349 ~~~~~~~~~~~~~~~~-~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
.+|+. .+.+.+...+....|++|-|+|+-.+.+ .-|++|.++.
T Consensus 671 -----------~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgD-----------gCIFvW~lp~ 714 (1080)
T KOG1408|consen 671 -----------VSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGD-----------GCIFVWKLPL 714 (1080)
T ss_pred -----------ccchhhhhhcCcchheeeeeecccchhheeecCC-----------ceEEEEECch
Confidence 67774 5788888889999999999999877754 3488888765
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.77 E-value=2.8 Score=47.43 Aligned_cols=89 Identities=7% Similarity=-0.022 Sum_probs=47.8
Q ss_pred cceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecC--CceeEEEecCCCcc
Q 003363 124 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ--SQLEKEFHVPQTVH 201 (826)
Q Consensus 124 ~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~ 201 (826)
...+.++++. ..++..+.++... ..+....-..|++...+|+...++ ...++.+... .....++.......
T Consensus 52 sS~G~lyl~~--R~~~~~~~~~~~~---~~~~~~~~~vs~~e~lvAagt~~g--~V~v~ql~~~~p~~~~~~t~~d~~~~ 124 (726)
T KOG3621|consen 52 SSAGSVYLYN--RHTGEMRKLKNEG---ATGITCVRSVSSVEYLVAAGTASG--RVSVFQLNKELPRDLDYVTPCDKSHK 124 (726)
T ss_pred cccceEEEEe--cCchhhhcccccC---ccceEEEEEecchhHhhhhhcCCc--eEEeehhhccCCCcceeeccccccCC
Confidence 3445555544 4444444444332 113355667899888888765432 2223333321 12233344333223
Q ss_pred ccccCCCcccceeecCCCCeEEEE
Q 003363 202 GSVYADGWFEGISWNSDETLIAYV 225 (826)
Q Consensus 202 g~v~~~~~~~~~~wSPDg~~ia~~ 225 (826)
..| ..+.||+||+++++.
T Consensus 125 ~rV------Tal~Ws~~~~k~ysG 142 (726)
T KOG3621|consen 125 CRV------TALEWSKNGMKLYSG 142 (726)
T ss_pred ceE------EEEEecccccEEeec
Confidence 333 899999999999874
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.65 E-value=12 Score=40.40 Aligned_cols=77 Identities=17% Similarity=0.182 Sum_probs=49.4
Q ss_pred ceEEEEEccC--CceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 273 PSLFVININS--GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 273 ~~l~v~d~~~--g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
..+.+||..+ .....+ ......+..+.|+|+++. ++..+. ....+..+++
T Consensus 134 ~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~----~~~~~~--------------~~~~~~~~~~-------- 185 (466)
T COG2319 134 GTVKLWDLSTPGKLIRTL--EGHSESVTSLAFSPDGKL----LASGSS--------------LDGTIKLWDL-------- 185 (466)
T ss_pred ccEEEEEecCCCeEEEEE--ecCcccEEEEEECCCCCE----EEecCC--------------CCCceEEEEc--------
Confidence 5788888876 334444 333345558999999996 655541 1336777776
Q ss_pred hhhhhcCCCCC-CcceecCCCCccccCceecCCCCEE
Q 003363 351 ELELKESSSED-LPVVNLTESISSAFFPRFSPDGKFL 386 (826)
Q Consensus 351 ~~~~~~~~~~~-~~~~~Lt~~~~~~~~p~~SpDG~~l 386 (826)
.. .....+..+...+....|+|+|+.+
T Consensus 186 ---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 213 (466)
T COG2319 186 ---------RTGKPLSTLAGHTDPVSSLAFSPDGGLL 213 (466)
T ss_pred ---------CCCceEEeeccCCCceEEEEEcCCcceE
Confidence 33 3334444456678889999999833
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.59 E-value=1.3 Score=44.54 Aligned_cols=156 Identities=13% Similarity=0.167 Sum_probs=97.9
Q ss_pred CCccCceEEEEEccCCceE---ec--c---------CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccC
Q 003363 268 AGKRQPSLFVININSGEVQ---AV--K---------GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNR 333 (826)
Q Consensus 268 ~~~~~~~l~v~d~~~g~~~---~l--~---------~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~ 333 (826)
++..+..|.|+|++...-. -+ + .......+..+.|-|=... +...+ . .
T Consensus 61 SGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG----mFtss-S-------------F 122 (397)
T KOG4283|consen 61 SGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG----MFTSS-S-------------F 122 (397)
T ss_pred ecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc----eeecc-c-------------c
Confidence 3446788999998754310 01 0 1112345678889997776 54333 2 2
Q ss_pred CCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCC--EEEEEeccCCCCCCCCcccceEEEEeC
Q 003363 334 PCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK--FLVFLSAKSSVDSGAHSATDSLHRIDW 411 (826)
Q Consensus 334 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~--~l~f~s~~~~~~~g~~~~~~~l~~~d~ 411 (826)
+-.|.++|. .+-+......-.+.+.+-+|||=.. -|+-...++ .++.+-|+
T Consensus 123 DhtlKVWDt-----------------nTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~----------~~VrLCDi 175 (397)
T KOG4283|consen 123 DHTLKVWDT-----------------NTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRD----------VQVRLCDI 175 (397)
T ss_pred cceEEEeec-----------------ccceeeEEeecCceeehhhcChhhhcceEEEEecCC----------CcEEEEec
Confidence 236778887 5555544444556677778887554 333333332 56888888
Q ss_pred CCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC
Q 003363 412 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE 487 (826)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~ 487 (826)
.+|.-.....+.. .++..+.|+|...+++++...++..++|-|...+|-.+.|-...
T Consensus 176 ~SGs~sH~LsGHr-------------------~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn 232 (397)
T KOG4283|consen 176 ASGSFSHTLSGHR-------------------DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN 232 (397)
T ss_pred cCCcceeeecccc-------------------CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc
Confidence 8876543332222 24557789999999999988889999998888777777665443
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=93.51 E-value=10 Score=42.40 Aligned_cols=95 Identities=18% Similarity=0.180 Sum_probs=60.6
Q ss_pred ceEEEEEccCCceEecc--CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 273 PSLFVININSGEVQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~--~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
-+-.+++...++++++. .++-...+...+++|+.++ ++... .++.|..+|.
T Consensus 236 ~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~k----LvlGC---------------~DgSiiLyD~-------- 288 (545)
T PF11768_consen 236 ADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDK----LVLGC---------------EDGSIILYDT-------- 288 (545)
T ss_pred eEEEEEEeecCceeEEEEEEEecCCcceEEecCcccce----EEEEe---------------cCCeEEEEEc--------
Confidence 34455566566665542 2344446778899999998 88876 3347888885
Q ss_pred hhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
..+ ...++...-.....+|.|||..++..+.+ ++|..+|..-+.
T Consensus 289 ---------~~~-~t~~~ka~~~P~~iaWHp~gai~~V~s~q-----------GelQ~FD~ALsp 332 (545)
T PF11768_consen 289 ---------TRG-VTLLAKAEFIPTLIAWHPDGAIFVVGSEQ-----------GELQCFDMALSP 332 (545)
T ss_pred ---------CCC-eeeeeeecccceEEEEcCCCcEEEEEcCC-----------ceEEEEEeecCc
Confidence 222 33344444446778999999977655544 457777765543
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.64 Score=47.98 Aligned_cols=144 Identities=17% Similarity=0.143 Sum_probs=85.6
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
.+....++|--..|+-....+ . .+++.+ ...-+.+++. .... ..++|+| +-.. |++....--
T Consensus 189 ti~svkfNpvETsILas~~sD-r--sIvLyD~R~~~Pl~KVi~-~mRT----------N~IswnP-eafn-F~~a~ED~n 252 (433)
T KOG0268|consen 189 SISSVKFNPVETSILASCASD-R--SIVLYDLRQASPLKKVIL-TMRT----------NTICWNP-EAFN-FVAANEDHN 252 (433)
T ss_pred ceeEEecCCCcchheeeeccC-C--ceEEEecccCCccceeee-eccc----------cceecCc-cccc-eeecccccc
Confidence 467888898887776543222 2 244444 3333444443 3333 5899999 4444 443332222
Q ss_pred CCCccCCCC-CCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 233 KPTFSLGST-KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 233 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
.-+++.-+. .......++.+-.-.++|+|.+.|..++.-+..|-++....+.-+.+--+..-..+..+.||-|+++
T Consensus 253 lY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsky--- 329 (433)
T KOG0268|consen 253 LYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKY--- 329 (433)
T ss_pred ceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccE---
Confidence 222332111 1223344555556678899997787777778889999988887766521222346789999999997
Q ss_pred EEEEEee
Q 003363 312 YLVFVGW 318 (826)
Q Consensus 312 ~lvf~~~ 318 (826)
|+..++
T Consensus 330 -i~SGSd 335 (433)
T KOG0268|consen 330 -IISGSD 335 (433)
T ss_pred -EEecCC
Confidence 766653
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.45 E-value=3 Score=45.54 Aligned_cols=68 Identities=13% Similarity=0.165 Sum_probs=41.8
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCcceee---ee--eeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC
Q 003363 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKL---GI--KYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 370 (826)
Q Consensus 296 ~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~---g~--~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 370 (826)
....+.|.|||+ |++.......... +. .........|++++. ++++.+.+..+
T Consensus 125 ~~~~l~~gpDG~-----LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p-----------------dg~~~e~~a~G 182 (367)
T TIGR02604 125 SLNSLAWGPDGW-----LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP-----------------DGGKLRVVAHG 182 (367)
T ss_pred cccCceECCCCC-----EEEecccCCCceeccCCCccCcccccCceEEEEec-----------------CCCeEEEEecC
Confidence 355789999997 7775422110000 00 000012247999997 67777777766
Q ss_pred CccccCceecCCCCE
Q 003363 371 ISSAFFPRFSPDGKF 385 (826)
Q Consensus 371 ~~~~~~p~~SpDG~~ 385 (826)
........|+|+|+.
T Consensus 183 ~rnp~Gl~~d~~G~l 197 (367)
T TIGR02604 183 FQNPYGHSVDSWGDV 197 (367)
T ss_pred cCCCccceECCCCCE
Confidence 666778999999985
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG1551 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.35 Score=47.75 Aligned_cols=57 Identities=11% Similarity=-0.081 Sum_probs=35.5
Q ss_pred EEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 762 TIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 762 vLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+.++.+++|..+|-.....+.+.... +++.+.+ .||.-..--....+-++|.+-|++
T Consensus 309 ~ivv~A~~D~Yipr~gv~~lQ~~WPg----~eVr~~e-gGHVsayl~k~dlfRR~I~d~L~R 365 (371)
T KOG1551|consen 309 IIVVQAKEDAYIPRTGVRSLQEIWPG----CEVRYLE-GGHVSAYLFKQDLFRRAIVDGLDR 365 (371)
T ss_pred EEEEEecCCccccccCcHHHHHhCCC----CEEEEee-cCceeeeehhchHHHHHHHHHHHh
Confidence 56678999999988666555555543 4555555 688643322223566677777765
|
|
| >COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.37 Score=52.72 Aligned_cols=112 Identities=19% Similarity=0.179 Sum_probs=61.1
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH-----------------HHHHHHHCCcEEEEECCCCCCCCchh
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-----------------SLAFLSSVGYSLLIVNYRGSLGFGEE 638 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~-----------------~~~~la~~G~~Vl~~d~rG~~g~G~~ 638 (826)
+..|.+.+++ ...++|+|+++-|||++........ .-..+... -.++-+|.+-.+||..+
T Consensus 87 ~ffy~fe~~n--dp~~rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~-adLvFiDqPvGTGfS~a 163 (498)
T COG2939 87 FFFYTFESPN--DPANRPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDF-ADLVFIDQPVGTGFSRA 163 (498)
T ss_pred EEEEEecCCC--CCCCCceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccC-CceEEEecCcccCcccc
Confidence 5556666542 5678999999999998753221110 00011111 24667775544556554
Q ss_pred hhhcCCCCCCcchHHHHHHHHHHHHHc-CCC--CCCcEEEEEecchHHHHHHHHHh
Q 003363 639 ALQSLPGKVGSQDVNDVLTAIDHVIDM-GLA--NPSKVTVVGGSHGGFLTTHLIGQ 691 (826)
Q Consensus 639 ~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~--d~~rv~l~G~S~GG~~a~~~a~~ 691 (826)
.......+. ...-+|+..+.+.+.+. +.. ...+..|+|.||||+-+..+|..
T Consensus 164 ~~~e~~~d~-~~~~~D~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~~ 218 (498)
T COG2939 164 LGDEKKKDF-EGAGKDVYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAHE 218 (498)
T ss_pred cccccccch-hccchhHHHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHHH
Confidence 221112111 11235555555544442 111 12478999999999998877753
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=93.12 E-value=6.1 Score=45.72 Aligned_cols=105 Identities=12% Similarity=0.088 Sum_probs=58.4
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCC----ccceeecCCcceecccEEEEeCCCCCeEEEEecCCC
Q 003363 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENEN----SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN 176 (826)
Q Consensus 101 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~----~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~ 176 (826)
.+..|+||+.+++... ....+++-.+... .. .+.+... .....|+|.++| .+..+ +++.
T Consensus 367 s~avS~~g~~~A~v~~--------~~~~l~vg~~~~~-~~~~~~~~~~~~~------~~Lt~PS~d~~g-~vWtv-d~~~ 429 (599)
T PRK13613 367 RVAVSRDESRAAGISA--------DGDSVYVGSLTPG-ASIGVHSWGVTAD------GRLTSPSWDGRG-DLWVV-DRDP 429 (599)
T ss_pred ceEEcCCCceEEEEcC--------CCcEEEEeccCCC-Cccccccceeecc------CcccCCcCcCCC-CEEEe-cCCC
Confidence 4556788888887632 1235555443222 22 1122111 246789999999 66655 3322
Q ss_pred CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecC
Q 003363 177 ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (826)
Q Consensus 177 ~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~ 229 (826)
+..+++.+. ..++... .+.. ...| ..+..++.|+||.++|.+.+..
T Consensus 430 ~~~~vl~v~~~~G~~~~-V~~~-~l~g-----~~I~~lrvSrDG~RvAvv~~~~ 476 (599)
T PRK13613 430 ADPRLLWLLQGDGEPVE-VRTP-ELDG-----HRVVAVRVARDGVRVALIVEKD 476 (599)
T ss_pred CCceEEEEEcCCCcEEE-eecc-ccCC-----CEeEEEEECCCccEEEEEEecC
Confidence 334445444 4454433 2222 1212 1348999999999999997754
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=93.00 E-value=8 Score=39.10 Aligned_cols=120 Identities=11% Similarity=0.112 Sum_probs=69.9
Q ss_pred ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCccccc
Q 003363 364 VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 443 (826)
Q Consensus 364 ~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~ 443 (826)
.++|-.+...+...+|+.+|..+ |.+-. +...+.++|+..-+...+.-+. ... .
T Consensus 189 kTQLIAHDKEV~DIaf~~~s~~~-FASvg---------aDGSvRmFDLR~leHSTIIYE~-----------p~~-----~ 242 (364)
T KOG0290|consen 189 KTQLIAHDKEVYDIAFLKGSRDV-FASVG---------ADGSVRMFDLRSLEHSTIIYED-----------PSP-----S 242 (364)
T ss_pred eeEEEecCcceeEEEeccCccce-EEEec---------CCCcEEEEEecccccceEEecC-----------CCC-----C
Confidence 56888888889999999987764 55532 2356888998764432111100 000 0
Q ss_pred CCCCCCccccCCCEEEEEEEeCCeEEEEEEEC--CCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCC
Q 003363 444 SSILSNPWLSDGCTMLLSSIWGSSQVIISVNV--SSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPV 510 (826)
Q Consensus 444 ~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl--~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~ 510 (826)
..+.+++|.+..-.+..+.. .+...+..+|+ ...-+-+|....+.+....|.|....-++++.+..
T Consensus 243 ~pLlRLswnkqDpnymATf~-~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~ 310 (364)
T KOG0290|consen 243 TPLLRLSWNKQDPNYMATFA-MDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDC 310 (364)
T ss_pred CcceeeccCcCCchHHhhhh-cCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcc
Confidence 12346778765543322222 22334444444 44556667666677777789998877777665543
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.83 Score=46.63 Aligned_cols=147 Identities=16% Similarity=0.145 Sum_probs=85.1
Q ss_pred cCceEEEEEccCCceEecc---CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccc
Q 003363 271 RQPSLFVININSGEVQAVK---GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~---~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (826)
.+..||-...+++ .+.+. ....+......+|+=|...+.-.++..+ +.+.|+++|+
T Consensus 64 ~rvtiy~c~~d~~-ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G---------------~~GvIrVid~----- 122 (385)
T KOG1034|consen 64 NRVTIYECPGDGG-IRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG---------------YLGVIRVIDV----- 122 (385)
T ss_pred cEEEEEEECCccc-eeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec---------------ceeEEEEEec-----
Confidence 4556666665552 33332 1112334456788888764322344333 2346889998
Q ss_pred hhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeee
Q 003363 348 EASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 426 (826)
Q Consensus 348 ~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 426 (826)
..++ ...+-.+.+.+...++-|+--+|+...+++ ..|.+||.+++.-..+-.+...
T Consensus 123 ------------~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD----------~svRlwnI~~~~Cv~VfGG~eg- 179 (385)
T KOG1034|consen 123 ------------VSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKD----------HSVRLWNIQTDVCVAVFGGVEG- 179 (385)
T ss_pred ------------chhhhccceeccCccchhhhcCCCCCcEEEEecCC----------ceEEEEeccCCeEEEEeccccc-
Confidence 4444 456777888899999999987777666554 4688899888554333222211
Q ss_pred eeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc
Q 003363 427 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 479 (826)
Q Consensus 427 ~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~ 479 (826)
+...+.++.|+.||.+|+ +. +.+-.|-.+++...+
T Consensus 180 ---------------HrdeVLSvD~~~~gd~i~-Sc--GmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 180 ---------------HRDEVLSVDFSLDGDRIA-SC--GMDHSLKLWRLNVKE 214 (385)
T ss_pred ---------------ccCcEEEEEEcCCCCeee-cc--CCcceEEEEecChhH
Confidence 222455778999998553 32 333344444444433
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.58 Score=51.96 Aligned_cols=186 Identities=8% Similarity=0.064 Sum_probs=99.5
Q ss_pred hhcccceeEEEEEEeecCCC----CccceeecCCc-ceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEE
Q 003363 120 LLANKRKKFMLSTVISKENE----NSVTFQWAPFP-VEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEF 194 (826)
Q Consensus 120 ~~~~~~~~~l~~~~i~~~~~----~~~~lt~~~~~-~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 194 (826)
.+++.-.+.|++|+++.... ..-+++....+ .....+.+.+-.|.|.-|+- ++....+++|+-....++.
T Consensus 133 vaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs-----Ggtek~lr~wDprt~~kim 207 (735)
T KOG0308|consen 133 VASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS-----GGTEKDLRLWDPRTCKKIM 207 (735)
T ss_pred EEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe-----cCcccceEEecccccccee
Confidence 34455567788888864422 01122222222 11234666666777743332 2444578888654444555
Q ss_pred ecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCce
Q 003363 195 HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPS 274 (826)
Q Consensus 195 ~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~ 274 (826)
.+. +....| ..+..++||++++..+.+.+.+.|... ..........+........-+++....|.+.++..
T Consensus 208 kLr-GHTdNV------r~ll~~dDGt~~ls~sSDgtIrlWdLg--qQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~ 278 (735)
T KOG0308|consen 208 KLR-GHTDNV------RVLLVNDDGTRLLSASSDGTIRLWDLG--QQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGN 278 (735)
T ss_pred eee-ccccce------EEEEEcCCCCeEeecCCCceEEeeecc--ccceeeeEEeccCceEEEeeCCCcceEEecCCCCc
Confidence 543 333333 788999999999999999887644333 22222222222222222222455566677888999
Q ss_pred EEEEEccC-CceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceee
Q 003363 275 LFVININS-GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL 325 (826)
Q Consensus 275 l~v~d~~~-g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~ 325 (826)
|++-|+.+ .+.+.+ ...+..+......-+... +..+++....+|+
T Consensus 279 i~~Tdl~n~~~~tli--ck~daPv~~l~~~~~~~~----~WvtTtds~I~rW 324 (735)
T KOG0308|consen 279 IYRTDLRNPAKSTLI--CKEDAPVLKLHLHEHDNS----VWVTTTDSSIKRW 324 (735)
T ss_pred EEecccCCchhheEe--ecCCCchhhhhhccccCC----ceeeeccccceec
Confidence 99999987 344444 333334444444444444 4344444433333
|
|
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=92.71 E-value=7 Score=44.60 Aligned_cols=64 Identities=16% Similarity=0.169 Sum_probs=39.6
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~ 229 (826)
....|+|.++| .+..+.+.. ...+... ..|.... +..+....+. +..+..|+||.++|.+.+..
T Consensus 374 ~Lt~PS~d~~g-~vWtv~~g~---~~~l~~~~~~G~~~~-v~v~~~~~~~------I~~lrvSrDG~R~Avi~~~~ 438 (557)
T PRK13615 374 GLVAPSLDAQG-YVWSTPASD---PRGLVAWGPDGVGHP-VAVSWTATGR------VVSLEVARDGARVLVQLETG 438 (557)
T ss_pred ccccCcCcCCC-CEEEEeCCC---ceEEEEecCCCceEE-eeccccCCCe------eEEEEeCCCccEEEEEEecC
Confidence 46789999999 776554432 2233333 3344433 2343333233 48999999999999997654
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=92.70 E-value=4.9 Score=46.44 Aligned_cols=87 Identities=18% Similarity=0.146 Sum_probs=50.6
Q ss_pred cccCceecCCCCEEEEEeccCCCCCCCCcccceEEE--EeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCc
Q 003363 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR--IDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 450 (826)
Q Consensus 373 ~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 450 (826)
.+...+.|+||.+++++.... +..+|++ +--+.++...++. ...+... - ..+..+.
T Consensus 456 ~I~~lrvSrDG~RvAvv~~~~--------g~~~v~va~V~R~~~G~~~l~~----~~~l~~~--l--------~~v~~~~ 513 (599)
T PRK13613 456 RVVAVRVARDGVRVALIVEKD--------GRRSLQIGRIVRDAKAVVSVEE----FRSLAPE--L--------EDVTDMS 513 (599)
T ss_pred EeEEEEECCCccEEEEEEecC--------CCcEEEEEEEEeCCCCcEEeec----cEEeccC--C--------CccceeE
Confidence 578899999999999998753 2234544 3323333222211 1111000 0 1245788
Q ss_pred cccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003363 451 WLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (826)
Q Consensus 451 ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~ 481 (826)
|..++..+++.....+...+|.+++++....
T Consensus 514 W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~ 544 (599)
T PRK13613 514 WAGDSQLVVLGREEGGVQQARYVQVDGSTPP 544 (599)
T ss_pred EcCCCEEEEEeccCCCCcceEEEecCCcCcc
Confidence 9988874444544455778999999865543
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=92.67 E-value=8.8 Score=41.04 Aligned_cols=98 Identities=20% Similarity=0.186 Sum_probs=50.2
Q ss_pred CccccCceecCCCCEEEEEeccCCCCCCCC-----cccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCC
Q 003363 371 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAH-----SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 445 (826)
Q Consensus 371 ~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~-----~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~ 445 (826)
+......+++|||+.|+......-...|.. ....+|+.+|..+.+.. .... ..++-..+... ....
T Consensus 146 N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~--~~~~--~y~ld~~~~~~-----~~~~ 216 (326)
T PF13449_consen 146 NRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEP--VAEY--AYPLDPPPTAP-----GDNG 216 (326)
T ss_pred CCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCcc--ceEE--EEeCCcccccc-----CCCC
Confidence 344677899999997765554431111111 11256777887663321 0000 11110000000 1124
Q ss_pred CCCCccccCCCEEEEEEEe----CCeEEEEEEECCC
Q 003363 446 ILSNPWLSDGCTMLLSSIW----GSSQVIISVNVSS 477 (826)
Q Consensus 446 ~~~~~ws~Dg~~l~~~~~~----~~~~~l~~vdl~t 477 (826)
+..+.+.+|++.|++.... ....+||.+++..
T Consensus 217 isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 217 ISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred ceeEEEECCCcEEEEEccCCCCccceEEEEEEEccc
Confidence 5678889999866665542 3456788888753
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=92.64 E-value=3.6 Score=42.19 Aligned_cols=96 Identities=16% Similarity=0.122 Sum_probs=67.5
Q ss_pred cCceEEEEEccCCceE-eccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchh
Q 003363 271 RQPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 349 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~-~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 349 (826)
..+.|+++|+.+++.. .+ ......+....+.|+..+ |+..+.. +..|..+++
T Consensus 113 ~~GvIrVid~~~~~~~~~~--~ghG~sINeik~~p~~~q----lvls~Sk--------------D~svRlwnI------- 165 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNY--RGHGGSINEIKFHPDRPQ----LVLSASK--------------DHSVRLWNI------- 165 (385)
T ss_pred ceeEEEEEecchhhhccce--eccCccchhhhcCCCCCc----EEEEecC--------------CceEEEEec-------
Confidence 3578999999887754 33 344456778889999988 8777632 236777777
Q ss_pred hhhhhhcCCCCCCcceecCCC----CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCC
Q 003363 350 SELELKESSSEDLPVVNLTES----ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (826)
Q Consensus 350 ~~~~~~~~~~~~~~~~~Lt~~----~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~ 414 (826)
.+.....+..+ ...+.+..||+||.+|+--..+ .+|.+|+++..
T Consensus 166 ----------~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmD-----------hslk~W~l~~~ 213 (385)
T KOG1034|consen 166 ----------QTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMD-----------HSLKLWRLNVK 213 (385)
T ss_pred ----------cCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCc-----------ceEEEEecChh
Confidence 66666666543 4468899999999988744433 46777777753
|
|
| >KOG2521 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.49 E-value=4 Score=43.34 Aligned_cols=225 Identities=13% Similarity=0.060 Sum_probs=120.7
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCC
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (826)
+...|+|+.+-..+ .. ............+.||.++.+-.+-..- .+ ...............+..+.+....
T Consensus 36 ~s~k~Iv~~~gWag-~~-~r~l~ky~~~Yq~~g~~~~~~tap~~~~---~~----~~s~~~~sl~~~~~~l~~L~~~~~~ 106 (350)
T KOG2521|consen 36 ESEKPIVVLLGWAG-AI-DRNLMKYSKIYQDKGYIVVRITAPCPSV---FL----SASRRILSLSLASTRLSELLSDYNS 106 (350)
T ss_pred CccccEEEEeeecc-cc-chhHHHHHHHHhcCCceEEEecCccccc---cc----ccccccchhhHHHHHHHHHhhhccC
Confidence 34448777774433 22 2244456677788999998887654221 11 1122222344555566666665558
Q ss_pred CCCcEEEEEecchHHHHHHHH---H-hC-C---CceeEEE-ecCCcc-----chhhhccCCCCCCchhhhhccCcC---C
Q 003363 669 NPSKVTVVGGSHGGFLTTHLI---G-QA-P---DKFVAAA-ARNPLC-----NLALMVGTTDIPDWCYVESYGSKG---K 731 (826)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~a---~-~~-p---~~~~a~v-~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~~~---~ 731 (826)
|+.++.+.-+|+||.+.+... . ++ | +++...+ ..+|.. +...+......... ...+.... .
T Consensus 107 ~~~pi~fh~FS~ng~~~~~si~~~~~~~~~~~~~~~~~~~fdS~p~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~i~ 184 (350)
T KOG2521|consen 107 DPCPIIFHVFSGNGVRLMYSISLQLIKHEPKAAQLSGGIIFDSAPARSSPVQLGWAVSFSSPPDDY--VARWARLNYHIT 184 (350)
T ss_pred CcCceEEEEecCCceeehHHHHHHHhhcCchhHhhcCCceEeccccccchhhhcceeccccCchhh--HHHHHhcCeEEE
Confidence 899999999999998765544 1 12 2 1222222 112211 11111111100000 00000000 0
Q ss_pred ccCCCCCCh--hhHHHHhhcCcc-------c----ccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeC
Q 003363 732 DSFTESPSV--EDLTRFHSKSPI-------S----HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 798 (826)
Q Consensus 732 ~~~~~~~~~--~~~~~~~~~sp~-------~----~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p 798 (826)
...+....+ ..........+. . .......+.|.+.+..|.++|..+.+++.+..+.+|+.++-+-+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~~v~s~~~~ 264 (350)
T KOG2521|consen 185 LLTMAGNEGGAYLLGPLAEKISMSRKYHFLDRYEEQRNELPWNQLYLYSDNDDVLPADEIEKFIALRREKGVNVKSVKFK 264 (350)
T ss_pred EEEeeecccchhhhhhhhhccccccchHHHHHHHhhhhcccccceeecCCccccccHHHHHHHHHHHHhcCceEEEeecc
Confidence 000000000 000000000000 0 011113567888899999999999999999999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 799 NDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 799 ~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
+.-|............+...+|++..
T Consensus 265 ds~H~~h~r~~p~~y~~~~~~Fl~~~ 290 (350)
T KOG2521|consen 265 DSEHVAHFRSFPKTYLKKCSEFLRSV 290 (350)
T ss_pred CccceeeeccCcHHHHHHHHHHHHhc
Confidence 99998765555667888999999865
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=92.45 E-value=3.3 Score=43.63 Aligned_cols=94 Identities=11% Similarity=0.105 Sum_probs=51.1
Q ss_pred EEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhh
Q 003363 275 LFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELEL 354 (826)
Q Consensus 275 l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 354 (826)
+.++....+..+.+ ...-..+.+++||||++. |+ +++ |+..|++...+
T Consensus 134 ~di~s~~~~~~~~~--lGhvSml~dVavS~D~~~----Ii-taD--------------RDEkIRvs~yp----------- 181 (390)
T KOG3914|consen 134 FDILSADSGRCEPI--LGHVSMLLDVAVSPDDQF----II-TAD--------------RDEKIRVSRYP----------- 181 (390)
T ss_pred eeeecccccCcchh--hhhhhhhheeeecCCCCE----EE-Eec--------------CCceEEEEecC-----------
Confidence 44444444555554 222235679999999985 55 443 33456666653
Q ss_pred hcCCCCCCccee-cCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCC
Q 003363 355 KESSSEDLPVVN-LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (826)
Q Consensus 355 ~~~~~~~~~~~~-Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~ 417 (826)
+.-.+.. ..++...+..+..-++ ..|+ .+ ++..+|++||+.+|...
T Consensus 182 -----a~f~IesfclGH~eFVS~isl~~~-~~Ll-S~----------sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 182 -----ATFVIESFCLGHKEFVSTISLTDN-YLLL-SG----------SGDKTLRLWDITSGKLL 228 (390)
T ss_pred -----cccchhhhccccHhheeeeeeccC-ceee-ec----------CCCCcEEEEecccCCcc
Confidence 2222222 2234445666665443 3333 22 23467999999887753
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.43 E-value=11 Score=42.07 Aligned_cols=203 Identities=10% Similarity=0.105 Sum_probs=111.5
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
.+-.+.+.|---+++-.--+ | -..|| ......+.+++.... +....|=+--.+|+..+++...+
T Consensus 15 RVKsVd~HPtePw~la~Lyn--G---~V~IWnyetqtmVksfeV~~~P---------vRa~kfiaRknWiv~GsDD~~Ir 80 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYN--G---DVQIWNYETQTMVKSFEVSEVP---------VRAAKFIARKNWIVTGSDDMQIR 80 (794)
T ss_pred ceeeeecCCCCceEEEeeec--C---eeEEEecccceeeeeeeecccc---------hhhheeeeccceEEEecCCceEE
Confidence 46666777776666543332 2 25566 333444555543221 24555666666676666554332
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc-eEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
.|+.......+.+..|..++...+-.|.--..++...+..|.+||-+.+= ..+.. ......+-+++|.|.....
T Consensus 81 --Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf-eGH~HyVMqv~fnPkD~nt-- 155 (794)
T KOG0276|consen 81 --VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF-EGHEHYVMQVAFNPKDPNT-- 155 (794)
T ss_pred --EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE-cCcceEEEEEEecCCCccc--
Confidence 23333333444455566666544444433333444456778888876542 22331 2334467899999965541
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEec
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~ 391 (826)
.+..+ .++ .+-++.+. ..-...+|..+...+....|-+-|.+=+.++.
T Consensus 156 -FaS~s-------------LDr--TVKVWslg----------------s~~~nfTl~gHekGVN~Vdyy~~gdkpylIsg 203 (794)
T KOG0276|consen 156 -FASAS-------------LDR--TVKVWSLG----------------SPHPNFTLEGHEKGVNCVDYYTGGDKPYLISG 203 (794)
T ss_pred -eeeee-------------ccc--cEEEEEcC----------------CCCCceeeeccccCcceEEeccCCCcceEEec
Confidence 33332 223 56666662 23334567777777888888877765555554
Q ss_pred cCCCCCCCCcccceEEEEeCCCCCCC
Q 003363 392 KSSVDSGAHSATDSLHRIDWPTNGNF 417 (826)
Q Consensus 392 ~~~~~~g~~~~~~~l~~~d~~~~~~~ 417 (826)
.+ ...+.+||.++..-.
T Consensus 204 aD---------D~tiKvWDyQtk~CV 220 (794)
T KOG0276|consen 204 AD---------DLTIKVWDYQTKSCV 220 (794)
T ss_pred CC---------CceEEEeecchHHHH
Confidence 32 256888998885543
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.33 E-value=3.6 Score=44.13 Aligned_cols=39 Identities=13% Similarity=0.218 Sum_probs=29.5
Q ss_pred ceEEEEEccCCceEeccCCCCC-CccceEEEeeCCCCCccEEEEEe
Q 003363 273 PSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVG 317 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg~~~~~~lvf~~ 317 (826)
.+||+|.+.+|+.-.+ ...+ ..+.-..||-||+. |+-.+
T Consensus 103 g~lYlWelssG~LL~v--~~aHYQ~ITcL~fs~dgs~----iiTgs 142 (476)
T KOG0646|consen 103 GNLYLWELSSGILLNV--LSAHYQSITCLKFSDDGSH----IITGS 142 (476)
T ss_pred CcEEEEEeccccHHHH--HHhhccceeEEEEeCCCcE----EEecC
Confidence 6799999999987665 3333 36778899999996 65555
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=92.30 E-value=19 Score=40.43 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=35.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEE
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 225 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~ 225 (826)
..+...+|-| |+.+++...++ +....|+ ++..... .+-.+..|.| ....|+|+..-++..
T Consensus 101 nAifDl~wap-ge~~lVsasGD----sT~r~Wdvk~s~l~G~-~~~~GH~~Sv------kS~cf~~~n~~vF~t 162 (720)
T KOG0321|consen 101 NAIFDLKWAP-GESLLVSASGD----STIRPWDVKTSRLVGG-RLNLGHTGSV------KSECFMPTNPAVFCT 162 (720)
T ss_pred ceeEeeccCC-CceeEEEccCC----ceeeeeeeccceeecc-eeeccccccc------chhhhccCCCcceee
Confidence 4588899999 77665544433 3455552 2222211 1223455555 788999999865554
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.29 E-value=10 Score=41.26 Aligned_cols=58 Identities=17% Similarity=0.128 Sum_probs=38.1
Q ss_pred CCCCccccCCCEEEEEEEeC-----------------CeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEE
Q 003363 446 ILSNPWLSDGCTMLLSSIWG-----------------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAV 505 (826)
Q Consensus 446 ~~~~~ws~Dg~~l~~~~~~~-----------------~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~ 505 (826)
...+.|.|||+ ||++.... ....++++|.++++.+.+..+.....-..|+++|+ ++++
T Consensus 126 ~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~t 200 (367)
T TIGR02604 126 LNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFC 200 (367)
T ss_pred ccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEE
Confidence 45788999996 77754421 01369999999988888765544333456777665 4443
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.27 E-value=6.5 Score=39.56 Aligned_cols=174 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred CCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEccccc
Q 003363 267 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 346 (826)
Q Consensus 267 ~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 346 (826)
|.......|-.+|..+|+++.+. .........+..-|||. ..++- ....|-++|.
T Consensus 77 ft~qg~gaiGhLdP~tGev~~yp-Lg~Ga~Phgiv~gpdg~-----~Witd---------------~~~aI~R~dp---- 131 (353)
T COG4257 77 FTAQGTGAIGHLDPATGEVETYP-LGSGASPHGIVVGPDGS-----AWITD---------------TGLAIGRLDP---- 131 (353)
T ss_pred EecCccccceecCCCCCceEEEe-cCCCCCCceEEECCCCC-----eeEec---------------CcceeEEecC----
Q ss_pred chhhhhhhhcCCCCCCcceecCCC----CccccCceecCCCCEEEEEeccCCCCCCCCc----ccceEEEEeCCCCCCCC
Q 003363 347 SEASELELKESSSEDLPVVNLTES----ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS----ATDSLHRIDWPTNGNFS 418 (826)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~Lt~~----~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~----~~~~l~~~d~~~~~~~~ 418 (826)
++.+.++.+-. ..+...+.|-++|. |.|+... |.++ ....|.+++.+-|.
T Consensus 132 -------------kt~evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~-----G~yGrLdPa~~~i~vfpaPqG~--- 189 (353)
T COG4257 132 -------------KTLEVTRFPLPLEHADANLETAVFDPWGN-LWFTGQI-----GAYGRLDPARNVISVFPAPQGG--- 189 (353)
T ss_pred -------------cccceEEeecccccCCCcccceeeCCCcc-EEEeecc-----ccceecCcccCceeeeccCCCC---
Q ss_pred cccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC--CeeeEEEe
Q 003363 419 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLT 496 (826)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~--~~~~~~~s 496 (826)
....++-.|||. ++|++ -....|-++|..++..+.+..... ..+...++
T Consensus 190 --------------------------gpyGi~atpdGs-vwyas--lagnaiaridp~~~~aev~p~P~~~~~gsRriws 240 (353)
T COG4257 190 --------------------------GPYGICATPDGS-VWYAS--LAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWS 240 (353)
T ss_pred --------------------------CCcceEECCCCc-EEEEe--ccccceEEcccccCCcceecCCCccccccccccc
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEe
Q 003363 497 LDGDNIIAVSSSPVDVPQVKYGY 519 (826)
Q Consensus 497 ~dg~~l~~~~s~~~~p~~l~~~~ 519 (826)
..-+.+..+...... ++.++
T Consensus 241 dpig~~wittwg~g~---l~rfd 260 (353)
T COG4257 241 DPIGRAWITTWGTGS---LHRFD 260 (353)
T ss_pred CccCcEEEeccCCce---eeEeC
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.16 E-value=12 Score=37.49 Aligned_cols=38 Identities=26% Similarity=0.217 Sum_probs=27.2
Q ss_pred CCCccccCceecCCCC-EEEEEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 369 ESISSAFFPRFSPDGK-FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 369 ~~~~~~~~p~~SpDG~-~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
.+.+..+..+|||-|- -|+|.+.. ...+++.|+.+...
T Consensus 248 ~hnGa~R~c~Fsl~g~lDLLf~sEh----------fs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 248 HHNGAFRVCRFSLYGLLDLLFISEH----------FSRVHVVDTRNYVN 286 (344)
T ss_pred CCCCceEEEEecCCCcceEEEEecC----------cceEEEEEcccCce
Confidence 3678889999998663 36677653 35688999877554
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=92.10 E-value=1.6 Score=44.18 Aligned_cols=140 Identities=16% Similarity=0.092 Sum_probs=73.8
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEE--EeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVV--WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~--wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
..|..+|..+|+...-..... ...... -.++++. ++... ....|+.+|+
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~----v~~~~---------------~~~~l~~~d~-------- 53 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGP--GIGGPVATAVPDGGR----VYVAS---------------GDGNLYALDA-------- 53 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSS--SCSSEEETEEEETTE----EEEEE---------------TTSEEEEEET--------
T ss_pred CEEEEEECCCCCEEEEEECCC--CCCCccceEEEeCCE----EEEEc---------------CCCEEEEEEC--------
Confidence 678999998887654421211 122333 4446664 55443 3348999998
Q ss_pred hhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCc-ccceeeeeee
Q 003363 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS-LEKIVDVIPV 429 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~-~~~~~~~~~~ 429 (826)
.+|+...-.........+. ..++..|++...+ ..|+.+|..+|+..-. ....
T Consensus 54 ---------~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~~~-----------~~l~~~d~~tG~~~W~~~~~~------ 106 (238)
T PF13360_consen 54 ---------KTGKVLWRFDLPGPISGAP-VVDGGRVYVGTSD-----------GSLYALDAKTGKVLWSIYLTS------ 106 (238)
T ss_dssp ---------TTSEEEEEEECSSCGGSGE-EEETTEEEEEETT-----------SEEEEEETTTSCEEEEEEE-S------
T ss_pred ---------CCCCEEEEeecccccccee-eecccccccccce-----------eeeEecccCCcceeeeecccc------
Confidence 6776543332222222222 3445556555522 3799999888765211 0000
Q ss_pred eeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003363 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (826)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~ 481 (826)
. .... .........++..+++... ...|+.+|+.+|++.
T Consensus 107 ----~-~~~~-----~~~~~~~~~~~~~~~~~~~---~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 107 ----S-PPAG-----VRSSSSPAVDGDRLYVGTS---SGKLVALDPKTGKLL 145 (238)
T ss_dssp ----S-CTCS-----TB--SEEEEETTEEEEEET---CSEEEEEETTTTEEE
T ss_pred ----c-cccc-----cccccCceEecCEEEEEec---cCcEEEEecCCCcEE
Confidence 0 0000 0012223334666766532 567999999999874
|
... |
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.93 E-value=17 Score=37.44 Aligned_cols=85 Identities=13% Similarity=0.170 Sum_probs=57.0
Q ss_pred cCceEEEEEccCCce---EeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccc
Q 003363 271 RQPSLFVININSGEV---QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~---~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (826)
..++|-+.|+...+. ..+ ...+..+..++.+-+|.. |+-.+. ...-|.++|.
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I--~AH~s~Iacv~Ln~~Gt~----vATaSt--------------kGTLIRIFdt----- 211 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSII--NAHDSDIACVALNLQGTL----VATAST--------------KGTLIRIFDT----- 211 (346)
T ss_pred ccceEEEEEhhhcCcCCceEE--EcccCceeEEEEcCCccE----EEEecc--------------CcEEEEEEEc-----
Confidence 347788888876555 455 455567778999999997 666552 1124666776
Q ss_pred hhhhhhhhcCCCCCCc-ceecCCC--CccccCceecCCCCEEEEEecc
Q 003363 348 EASELELKESSSEDLP-VVNLTES--ISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 348 ~~~~~~~~~~~~~~~~-~~~Lt~~--~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
.+|+ ...+..+ ...+...+||||+++|+..|.+
T Consensus 212 ------------~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdK 247 (346)
T KOG2111|consen 212 ------------EDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDK 247 (346)
T ss_pred ------------CCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCC
Confidence 4443 3444333 2347789999999999988866
|
|
| >PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides [] | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.36 Score=44.32 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhC-------CCceeEEEecCCcc
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-------PDKFVAAAARNPLC 706 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~-------p~~~~a~v~~~p~~ 706 (826)
.+.+...++.+.++.. ..+|.+.|||+||.+|..++... +..+++....+|.+
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~l~~~~~~~~~~~~~~~fg~P~~ 106 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAADLASHGPSSSSNVKCYTFGAPRV 106 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHHHHHCTTTSTTTEEEEEES-S--
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHhhhhcccccccceeeeecCCccc
Confidence 4456666666666643 47899999999999998877642 13466666666644
|
Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A .... |
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.71 E-value=32 Score=41.36 Aligned_cols=66 Identities=20% Similarity=0.261 Sum_probs=39.4
Q ss_pred EEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCC--CccccccCCCcccceeecCCCCeEEEEeecC
Q 003363 159 VVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQ--TVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (826)
Q Consensus 159 ~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~ 229 (826)
...|||.+++++.++... .|+-.. .....+-.+.. ..++..+.++.+..+.|||.|+.|+|+-+..
T Consensus 102 ~~~s~d~~~~~~~~~~~~----~~rhs~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp~~~~l~yv~~~n 169 (755)
T KOG2100|consen 102 DLISPDRKYILLGRNYKK----RFRHSY-TAKYHLYDLNTGEKLHPPEYEGSKIQYASWSPLGNDLAYVLHNN 169 (755)
T ss_pred cccChhhhhheeccCccc----ccceee-EEEEEEEEcCCCCcccCcccCCCeeEEEEEcCCCCEEEEEEecc
Confidence 478999999998766431 111110 00111111111 2355555666668899999999999997754
|
|
| >cd00741 Lipase Lipase | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.4 Score=44.94 Aligned_cols=40 Identities=25% Similarity=0.179 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC
Q 003363 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 694 (826)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~ 694 (826)
..+...++..... ....+|.++|||+||.+|..++.....
T Consensus 12 ~~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a~~~~~ 51 (153)
T cd00741 12 NLVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAGLDLRG 51 (153)
T ss_pred HHHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHHHHHHh
Confidence 3344444444333 245789999999999999988876543
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >smart00824 PKS_TE Thioesterase | Back alignment and domain information |
|---|
Probab=91.47 E-value=1.1 Score=43.95 Aligned_cols=84 Identities=15% Similarity=0.153 Sum_probs=49.5
Q ss_pred ccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHH-HHHHHHHcCCCCCCcEEEEEecchHHHHH
Q 003363 608 SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT-AIDHVIDMGLANPSKVTVVGGSHGGFLTT 686 (826)
Q Consensus 608 ~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~-~i~~l~~~~~~d~~rv~l~G~S~GG~~a~ 686 (826)
..|......+.. .+.|+.++.+|.+. .. .....++++.. .++.+.+. ....++.++|||+||.++.
T Consensus 13 ~~~~~~~~~l~~-~~~v~~~~~~g~~~---~~-------~~~~~~~~~~~~~~~~l~~~--~~~~~~~l~g~s~Gg~~a~ 79 (212)
T smart00824 13 HEYARLAAALRG-RRDVSALPLPGFGP---GE-------PLPASADALVEAQAEAVLRA--AGGRPFVLVGHSSGGLLAH 79 (212)
T ss_pred HHHHHHHHhcCC-CccEEEecCCCCCC---CC-------CCCCCHHHHHHHHHHHHHHh--cCCCCeEEEEECHHHHHHH
Confidence 345566666643 58999999988431 10 11112333333 22333332 2346799999999999998
Q ss_pred HHHHh---CCCceeEEEecCC
Q 003363 687 HLIGQ---APDKFVAAAARNP 704 (826)
Q Consensus 687 ~~a~~---~p~~~~a~v~~~p 704 (826)
.++.+ .++.+..+++..+
T Consensus 80 ~~a~~l~~~~~~~~~l~~~~~ 100 (212)
T smart00824 80 AVAARLEARGIPPAAVVLLDT 100 (212)
T ss_pred HHHHHHHhCCCCCcEEEEEcc
Confidence 87775 3445666665543
|
Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=90.95 E-value=21 Score=39.70 Aligned_cols=18 Identities=11% Similarity=-0.162 Sum_probs=13.4
Q ss_pred CCCccccCCCEEEEEEEeC
Q 003363 447 LSNPWLSDGCTMLLSSIWG 465 (826)
Q Consensus 447 ~~~~ws~Dg~~l~~~~~~~ 465 (826)
..+.|.|||+ ||++....
T Consensus 149 grI~FgPDG~-LYVs~GD~ 166 (454)
T TIGR03606 149 GRLVFGPDGK-IYYTIGEQ 166 (454)
T ss_pred ceEEECCCCc-EEEEECCC
Confidence 4778999996 77766544
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PLN02606 palmitoyl-protein thioesterase | Back alignment and domain information |
|---|
Probab=90.95 E-value=2.5 Score=43.74 Aligned_cols=103 Identities=19% Similarity=0.202 Sum_probs=57.7
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHH-CCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~-~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (826)
.+.| ||+.||-+.......+....+.+.+ .|+-+..+- .|. +. ...+.....+.+..+.+.+.+.+.+
T Consensus 25 ~~~P-vViwHGlgD~~~~~~~~~~~~~i~~~~~~pg~~v~-ig~---~~------~~s~~~~~~~Qv~~vce~l~~~~~L 93 (306)
T PLN02606 25 LSVP-FVLFHGFGGECSNGKVSNLTQFLINHSGYPGTCVE-IGN---GV------QDSLFMPLRQQASIACEKIKQMKEL 93 (306)
T ss_pred CCCC-EEEECCCCcccCCchHHHHHHHHHhCCCCCeEEEE-ECC---Cc------ccccccCHHHHHHHHHHHHhcchhh
Confidence 3556 5567996543334466666666642 366544443 221 11 0111111223344444444443333
Q ss_pred CCCcEEEEEecchHHHHHHHHHhCCC--ceeEEEecCC
Q 003363 669 NPSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNP 704 (826)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~p 704 (826)
. +-+.++|+|.||.+.-.++.++|+ .++-.|..++
T Consensus 94 ~-~G~naIGfSQGglflRa~ierc~~~p~V~nlISlgg 130 (306)
T PLN02606 94 S-EGYNIVAESQGNLVARGLIEFCDNAPPVINYVSLGG 130 (306)
T ss_pred c-CceEEEEEcchhHHHHHHHHHCCCCCCcceEEEecC
Confidence 2 458999999999999999998876 3666665543
|
|
| >PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.39 Score=46.83 Aligned_cols=70 Identities=17% Similarity=0.139 Sum_probs=46.3
Q ss_pred cEEEEECCCCCCCCchh-hhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhC
Q 003363 622 YSLLIVNYRGSLGFGEE-ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA 692 (826)
Q Consensus 622 ~~Vl~~d~rG~~g~G~~-~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~ 692 (826)
..|++|=||=..-.... ...............|+.+|.++.+++. -+..++.|+|||.|+.+...++.+.
T Consensus 46 ~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~-n~GRPfILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 46 CNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANY-NNGRPFILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred CccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhc-CCCCCEEEEEeChHHHHHHHHHHHH
Confidence 57889988854322111 0000011122334789999999888874 2346899999999999999998764
|
|
| >PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children | Back alignment and domain information |
|---|
Probab=90.22 E-value=1 Score=46.13 Aligned_cols=107 Identities=18% Similarity=0.188 Sum_probs=46.2
Q ss_pred CCCCcEEEEEcCCCCCCC-CccchHHHHHHH--HCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHH-HHHHH
Q 003363 589 CSCDPLIVVLHGGPHSVS-LSSYSKSLAFLS--SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI-DHVID 664 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~-~~~~~~~~~~la--~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i-~~l~~ 664 (826)
..+.| ||+.||-+.... ...+......+. --|..|..++.-. + ...+...... ..+.+..+.+ +.+.+
T Consensus 3 ~~~~P-vViwHGmGD~~~~~~~m~~i~~~i~~~~PG~yV~si~ig~-~-~~~D~~~s~f-----~~v~~Qv~~vc~~l~~ 74 (279)
T PF02089_consen 3 PSPLP-VVIWHGMGDSCCNPSSMGSIKELIEEQHPGTYVHSIEIGN-D-PSEDVENSFF-----GNVNDQVEQVCEQLAN 74 (279)
T ss_dssp TSS---EEEE--TT--S--TTTHHHHHHHHHHHSTT--EEE--SSS-S-HHHHHHHHHH-----SHHHHHHHHHHHHHHH
T ss_pred CCCCc-EEEEEcCccccCChhHHHHHHHHHHHhCCCceEEEEEECC-C-cchhhhhhHH-----HHHHHHHHHHHHHHhh
Confidence 34556 556799554322 223333333332 2366677776421 1 0001111100 1234443333 33333
Q ss_pred cCCCCCCcEEEEEecchHHHHHHHHHhCCC-ceeEEEecCC
Q 003363 665 MGLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNP 704 (826)
Q Consensus 665 ~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~p 704 (826)
.+.+. +-+.++|+|.||.+.-.++.++++ .++-.|..++
T Consensus 75 ~p~L~-~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlISlgg 114 (279)
T PF02089_consen 75 DPELA-NGFNAIGFSQGGLFLRAYVQRCNDPPVHNLISLGG 114 (279)
T ss_dssp -GGGT-T-EEEEEETCHHHHHHHHHHH-TSS-EEEEEEES-
T ss_pred Chhhh-cceeeeeeccccHHHHHHHHHCCCCCceeEEEecC
Confidence 33332 469999999999999999988865 4676666554
|
Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=90.10 E-value=5.7 Score=42.61 Aligned_cols=72 Identities=11% Similarity=0.003 Sum_probs=38.3
Q ss_pred CCCccccCCCEEEEEEEeCC-----------eEEEEEEECCCC-------------cEEEecCCCCCeeeEEEeecCCEE
Q 003363 447 LSNPWLSDGCTMLLSSIWGS-----------SQVIISVNVSSG-------------ELLRITPAESNFSWSLLTLDGDNI 502 (826)
Q Consensus 447 ~~~~ws~Dg~~l~~~~~~~~-----------~~~l~~vdl~tg-------------~~~~lt~~~~~~~~~~~s~dg~~l 502 (826)
..+.|.||| .||++....+ ...|++++.++. ..+.+..+-.+.....|.+..+.|
T Consensus 117 ~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l 195 (331)
T PF07995_consen 117 GGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRL 195 (331)
T ss_dssp EEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEE
T ss_pred ccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcE
Confidence 368899999 6888775432 236888886542 011111111112223556665677
Q ss_pred EEEEeCCCCCCeEEEEe
Q 003363 503 IAVSSSPVDVPQVKYGY 519 (826)
Q Consensus 503 ~~~~s~~~~p~~l~~~~ 519 (826)
++.-.+....-+|.++.
T Consensus 196 ~~~d~G~~~~dein~i~ 212 (331)
T PF07995_consen 196 WAADNGPDGWDEINRIE 212 (331)
T ss_dssp EEEEE-SSSSEEEEEE-
T ss_pred EEEccCCCCCcEEEEec
Confidence 77777777666676654
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=90.08 E-value=6.3 Score=43.93 Aligned_cols=152 Identities=11% Similarity=0.055 Sum_probs=82.4
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecC-cc-eeeeeeeeccCCCceEEEEcccccch
Q 003363 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSS-ET-RKLGIKYCYNRPCALYAVRVSLYKSE 348 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~-~~-~~~g~~~~~~~~~~l~~~d~~~~~~~ 348 (826)
.+.+|.++...+++.+.+.-.-.+..+-.+.||-...+ .+++-... .. ..... +-.++++
T Consensus 182 draNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~----qi~tVE~s~s~~g~~~~--------d~ciYE~------ 243 (545)
T PF11768_consen 182 DRANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPY----QIHTVEQSISVKGEPSA--------DSCIYEC------ 243 (545)
T ss_pred hhccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCc----EEEEEEEecCCCCCcee--------EEEEEEe------
Confidence 45789999998888887731222334456778875555 55543211 10 00111 1223332
Q ss_pred hhhhhhhcCCCCCCcceecC----CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCccccee
Q 003363 349 ASELELKESSSEDLPVVNLT----ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 424 (826)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~Lt----~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 424 (826)
...+.+++. .-...+...++||+.++|+..-.+ ..|.++|...+-.+. +..
T Consensus 244 -----------~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~D-----------gSiiLyD~~~~~t~~-~ka-- 298 (545)
T PF11768_consen 244 -----------SRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCED-----------GSIILYDTTRGVTLL-AKA-- 298 (545)
T ss_pred -----------ecCceeEEEEEEEecCCcceEEecCcccceEEEEecC-----------CeEEEEEcCCCeeee-eee--
Confidence 112222221 123456778999999999988766 358899876543221 100
Q ss_pred eeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003363 425 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (826)
Q Consensus 425 ~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt 484 (826)
.+ .+..++|.|||. +++..+..|..++|-+-+..=+.+-+.
T Consensus 299 ~~------------------~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALspi~~qLls 339 (545)
T PF11768_consen 299 EF------------------IPTLIAWHPDGA-IFVVGSEQGELQCFDMALSPIKMQLLS 339 (545)
T ss_pred cc------------------cceEEEEcCCCc-EEEEEcCCceEEEEEeecCccceeecc
Confidence 11 123678999997 555555566666665555443443333
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=90.00 E-value=15 Score=42.21 Aligned_cols=56 Identities=9% Similarity=0.116 Sum_probs=36.6
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEE
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 225 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~ 225 (826)
....++.|+||+.+|++.. +...++..+.++..+.+..- ... ..++|.++| .|..+
T Consensus 344 ~~~s~avS~~g~~~A~~~~---~~~~l~~~~~g~~~~~~~~g-~~L----------t~PS~d~~g-~vWtv 399 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNG---SRTTLYTVSPGQPARALTSG-STL----------TRPSFSPQD-WVWTA 399 (573)
T ss_pred cccceeecCCCceEEEecC---CCcEEEEecCCCcceeeecC-CCc----------cCCcccCCC-CEEEe
Confidence 4678899999999999833 22356656655544444432 223 689999998 55433
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=89.91 E-value=23 Score=35.94 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=25.9
Q ss_pred ceEEEEEccCCc----eEeccCCCCCCccceEEEeeCCCC
Q 003363 273 PSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEG 308 (826)
Q Consensus 273 ~~l~v~d~~~g~----~~~l~~~~~~~~~~~~~wSPDg~~ 308 (826)
..--+||+++|. -++| +..+-.+.+++|+-+|..
T Consensus 173 TTCTiWdie~~~~~~vkTQL--IAHDKEV~DIaf~~~s~~ 210 (364)
T KOG0290|consen 173 TTCTIWDIETGVSGTVKTQL--IAHDKEVYDIAFLKGSRD 210 (364)
T ss_pred CeEEEEEEeeccccceeeEE--EecCcceeEEEeccCccc
Confidence 456678888873 2466 778888999999997776
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=89.88 E-value=1.2 Score=37.05 Aligned_cols=84 Identities=12% Similarity=-0.023 Sum_probs=51.2
Q ss_pred eEEEeeCCCCCccEEEEEeecCcceeeeee---eeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCcccc
Q 003363 299 QVVWAPLNEGLHQYLVFVGWSSETRKLGIK---YCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 375 (826)
Q Consensus 299 ~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~---~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~ 375 (826)
++..++|+.. |+|+-.+..-....+. ......+.|+++|. .+++.+.|-.+.....
T Consensus 2 dldv~~~~g~----vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp-----------------~t~~~~vl~~~L~fpN 60 (89)
T PF03088_consen 2 DLDVDQDTGT----VYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDP-----------------STKETTVLLDGLYFPN 60 (89)
T ss_dssp EEEE-TTT------EEEEES-SS--TTGHHHHHHHT---EEEEEEET-----------------TTTEEEEEEEEESSEE
T ss_pred ceeEecCCCE----EEEEeCccccCccceeeeeecCCCCcCEEEEEC-----------------CCCeEEEehhCCCccC
Confidence 4567788555 8887533220000000 01134457999998 8888888888777788
Q ss_pred CceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 376 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 376 ~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
..+.|||++.|++...- ..+|+++.+.+
T Consensus 61 GVals~d~~~vlv~Et~----------~~Ri~rywl~G 88 (89)
T PF03088_consen 61 GVALSPDESFVLVAETG----------RYRILRYWLKG 88 (89)
T ss_dssp EEEE-TTSSEEEEEEGG----------GTEEEEEESSS
T ss_pred eEEEcCCCCEEEEEecc----------CceEEEEEEeC
Confidence 89999999998877654 36788886643
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.82 E-value=39 Score=38.07 Aligned_cols=160 Identities=11% Similarity=0.087 Sum_probs=87.6
Q ss_pred cceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCC-ceeEEEecCCCc
Q 003363 124 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQS-QLEKEFHVPQTV 200 (826)
Q Consensus 124 ~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~-~~~~~~~~~~~~ 200 (826)
+.+.+|.++..+ ...+..++..++ ..+...+..|.--+++..+++- ++.+| ..+ ...+.+. +.
T Consensus 74 sDD~~IrVfnyn-t~ekV~~FeAH~-----DyIR~iavHPt~P~vLtsSDDm-----~iKlW~we~~wa~~qtfe---GH 139 (794)
T KOG0276|consen 74 SDDMQIRVFNYN-TGEKVKTFEAHS-----DYIRSIAVHPTLPYVLTSSDDM-----TIKLWDWENEWACEQTFE---GH 139 (794)
T ss_pred cCCceEEEEecc-cceeeEEeeccc-----cceeeeeecCCCCeEEecCCcc-----EEEEeeccCceeeeeEEc---Cc
Confidence 344555555553 233445555554 5688888999888777655442 66777 222 2223332 21
Q ss_pred cccccCCCcccceeecCC-CCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCC--ccCCCccCceEEE
Q 003363 201 HGSVYADGWFEGISWNSD-ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWG--ETYAGKRQPSLFV 277 (826)
Q Consensus 201 ~g~v~~~~~~~~~~wSPD-g~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g--~~~~~~~~~~l~v 277 (826)
.-- ...+.|.|. -...|..+-+.+.+.+.+. ..........+..-++-+.|.+... ...++..+..|.+
T Consensus 140 ~Hy------VMqv~fnPkD~ntFaS~sLDrTVKVWslg--s~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKv 211 (794)
T KOG0276|consen 140 EHY------VMQVAFNPKDPNTFASASLDRTVKVWSLG--SPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKV 211 (794)
T ss_pred ceE------EEEEEecCCCccceeeeeccccEEEEEcC--CCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEE
Confidence 111 278899996 4566666667665543332 2222223334444444444443321 2345556788999
Q ss_pred EEccCCceEeccCCCC-CCccceEEEeeCCC
Q 003363 278 ININSGEVQAVKGIPK-SLSVGQVVWAPLNE 307 (826)
Q Consensus 278 ~d~~~g~~~~l~~~~~-~~~~~~~~wSPDg~ 307 (826)
||-++....+. ..+ ...+..+.|.|.=.
T Consensus 212 WDyQtk~CV~T--LeGHt~Nvs~v~fhp~lp 240 (794)
T KOG0276|consen 212 WDYQTKSCVQT--LEGHTNNVSFVFFHPELP 240 (794)
T ss_pred eecchHHHHHH--hhcccccceEEEecCCCc
Confidence 99998775443 232 23566777888555
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.64 E-value=10 Score=45.04 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=34.7
Q ss_pred CcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 362 LPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 362 ~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
....+|+.+.+.++++.||-||++|+-.|.++ .+.+|++++.+.
T Consensus 166 n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDR-----------siRlW~i~s~~~ 209 (967)
T KOG0974|consen 166 NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDR-----------SIRLWPIDSREV 209 (967)
T ss_pred CCcceecccCCceEEEEEccCCcEEEEEecCc-----------ceeeeecccccc
Confidence 33448899999999999999999999988775 366666666554
|
|
| >PF03283 PAE: Pectinacetylesterase | Back alignment and domain information |
|---|
Probab=89.64 E-value=0.22 Score=53.66 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHH
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG 690 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~ 690 (826)
..-+.+++++|.+++.-++++|.|.|.|+||+.++..+-
T Consensus 137 ~~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~d 175 (361)
T PF03283_consen 137 YRILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHAD 175 (361)
T ss_pred HHHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHHH
Confidence 456778999999987778899999999999999876543
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=89.63 E-value=3.3 Score=43.56 Aligned_cols=73 Identities=11% Similarity=0.110 Sum_probs=40.6
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCce
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV 285 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~ 285 (826)
..+.||||+++|.+.-.+...+...+. .......-..+|+.++......++ -..+++.++.+|++||+.+|+.
T Consensus 155 ~dVavS~D~~~IitaDRDEkIRvs~yp-a~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 155 LDVAVSPDDQFIITADRDEKIRVSRYP-ATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred heeeecCCCCEEEEecCCceEEEEecC-cccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCc
Confidence 689999999999887554433221111 111111112234444433333333 1235566889999999998853
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.01 E-value=25 Score=40.26 Aligned_cols=87 Identities=16% Similarity=0.031 Sum_probs=51.1
Q ss_pred ccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEccc
Q 003363 265 ETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 344 (826)
Q Consensus 265 ~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 344 (826)
..+.+..+..+.+||..+|+...+ ..+..... -..+-+... ++-. .+++.|.++++
T Consensus 263 ~lvsgS~D~t~rvWd~~sg~C~~~--l~gh~stv-~~~~~~~~~----~~sg---------------s~D~tVkVW~v-- 318 (537)
T KOG0274|consen 263 KLVSGSTDKTERVWDCSTGECTHS--LQGHTSSV-RCLTIDPFL----LVSG---------------SRDNTVKVWDV-- 318 (537)
T ss_pred EEEEEecCCcEEeEecCCCcEEEE--ecCCCceE-EEEEccCce----Eeec---------------cCCceEEEEec--
Confidence 445666789999999999987766 33332211 122222222 2221 26678999998
Q ss_pred ccchhhhhhhhcCCCCCCcceecCC-CCccccCceecCCCCEEEEEecc
Q 003363 345 YKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
.++...++.. +.+.+...... +..|+..+.+
T Consensus 319 ---------------~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d 350 (537)
T KOG0274|consen 319 ---------------TNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYD 350 (537)
T ss_pred ---------------cCcceEEEeccccccEEEEEec--CCEEEEEecC
Confidence 6666655554 55556655554 5666555544
|
|
| >PLN02517 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=88.57 E-value=0.86 Score=51.17 Aligned_cols=75 Identities=21% Similarity=0.253 Sum_probs=46.0
Q ss_pred cchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCC-CCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHH
Q 003363 609 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP-GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH 687 (826)
Q Consensus 609 ~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~-~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~ 687 (826)
.|...++.|+..||. -.|.+|. .-+|+.+.. .+....-+..+...|+.+.+.. ..++|.|+||||||.+++.
T Consensus 157 vw~kLIe~L~~iGY~--~~nL~gA---PYDWRls~~~le~rd~YF~rLK~lIE~ay~~n--ggkKVVLV~HSMGglv~ly 229 (642)
T PLN02517 157 VWAVLIANLARIGYE--EKNMYMA---AYDWRLSFQNTEVRDQTLSRLKSNIELMVATN--GGKKVVVVPHSMGVLYFLH 229 (642)
T ss_pred eHHHHHHHHHHcCCC--CCceeec---ccccccCccchhhhhHHHHHHHHHHHHHHHHc--CCCeEEEEEeCCchHHHHH
Confidence 457789999999997 4566652 223332211 0000111344555565554431 2478999999999999998
Q ss_pred HHH
Q 003363 688 LIG 690 (826)
Q Consensus 688 ~a~ 690 (826)
++.
T Consensus 230 FL~ 232 (642)
T PLN02517 230 FMK 232 (642)
T ss_pred HHH
Confidence 776
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=88.55 E-value=41 Score=36.67 Aligned_cols=59 Identities=17% Similarity=0.118 Sum_probs=33.9
Q ss_pred CCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 455 GCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 455 g~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
+..+|+.+. ...++.+|+.+|+..--... . .......+++.+++... -..++.++..++
T Consensus 241 ~~~vy~~~~---~g~l~a~d~~tG~~~W~~~~-~--~~~~p~~~~~~vyv~~~----~G~l~~~d~~tG 299 (377)
T TIGR03300 241 GGQVYAVSY---QGRVAALDLRSGRVLWKRDA-S--SYQGPAVDDNRLYVTDA----DGVVVALDRRSG 299 (377)
T ss_pred CCEEEEEEc---CCEEEEEECCCCcEEEeecc-C--CccCceEeCCEEEEECC----CCeEEEEECCCC
Confidence 345666532 33689999999986543332 1 11233456777766542 235888886544
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.35 E-value=15 Score=36.19 Aligned_cols=172 Identities=13% Similarity=0.180 Sum_probs=0.0
Q ss_pred EEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceec-CCCCccccCcee
Q 003363 301 VWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESISSAFFPRF 379 (826)
Q Consensus 301 ~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-t~~~~~~~~p~~ 379 (826)
+|||-++ +.|++ |...+|....+ +++....+...+.....- ..+.+.+...+|
T Consensus 17 a~sp~~~-----~l~ag--------------n~~G~iav~sl-------~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f 70 (325)
T KOG0649|consen 17 AISPSKQ-----YLFAG--------------NLFGDIAVLSL-------KSLDSGSAEPPGKLKIVPEQAHDGPIYYLAF 70 (325)
T ss_pred hhCCcce-----EEEEe--------------cCCCeEEEEEe-------hhhhccccCCCCCcceeeccccCCCeeeeee
Q ss_pred cCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEE
Q 003363 380 SPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 459 (826)
Q Consensus 380 SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~ 459 (826)
. |.-.|. .+...++-|.|.--....-+....++.+-...+ .-..| .++.+...|....|+
T Consensus 71 ~-d~~Lls-------------~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~-~~evP-----eINam~ldP~enSi~ 130 (325)
T KOG0649|consen 71 H-DDFLLS-------------GGDGLVYGWEWNEEEESLATKRLWEVKIPMQVD-AVEVP-----EINAMWLDPSENSIL 130 (325)
T ss_pred e-hhheee-------------ccCceEEEeeehhhhhhccchhhhhhcCccccC-cccCC-----ccceeEeccCCCcEE
Q ss_pred EEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 003363 460 LSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 524 (826)
Q Consensus 460 ~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~ 524 (826)
+. +|+..+|.+|+.+|++++...+..++-........+--+++.+...+ +.+-|+.+++
T Consensus 131 ~A---gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGt---vRvWd~kt~k 189 (325)
T KOG0649|consen 131 FA---GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGT---VRVWDTKTQK 189 (325)
T ss_pred Ee---cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCcc---EEEEeccccc
|
|
| >COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.30 E-value=0.94 Score=47.08 Aligned_cols=144 Identities=21% Similarity=0.206 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHc-CCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEec-CCccchh-------hhccCCCCCCchh
Q 003363 652 VNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR-NPLCNLA-------LMVGTTDIPDWCY 722 (826)
Q Consensus 652 ~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~-~p~~~~~-------~~~~~~~~~~~~~ 722 (826)
+..+..|++-..++ ..+..+...+.|.|--|+.+...|...|..+ ++|.. .-+.+.. ..++. .|..
T Consensus 214 v~a~srAMdlAq~eL~q~~Ik~F~VTGaSKRgWttwLTAIaDprv~-aIvp~v~D~Lni~a~L~hiyrsYGg----nwpi 288 (507)
T COG4287 214 VYAVSRAMDLAQDELEQVEIKGFMVTGASKRGWTTWLTAIADPRVF-AIVPFVYDNLNIEAQLLHIYRSYGG----NWPI 288 (507)
T ss_pred HHHHHHHHHHHHhhhhheeeeeEEEeccccchHHHHHHHhcCcchh-hhhhhHHhhcccHHHHHHHHHhhCC----CCCc
Confidence 44455555544442 2256688999999999999988888777543 33321 1122211 11111 1110
Q ss_pred h-hhccCcCCccCCCCCChhhHHHHhhcCccccc-----CCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEE
Q 003363 723 V-ESYGSKGKDSFTESPSVEDLTRFHSKSPISHI-----SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 796 (826)
Q Consensus 723 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~-----~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 796 (826)
. ..|..++.......| .......-.+|+.+. .++..|-+|+.+..|+..+++.+.-++..|... .-+.+
T Consensus 289 ~l~pyyaegi~erl~tp--~fkqL~~IiDPlay~~try~~RLalpKyivnaSgDdff~pDsa~lYyd~LPG~---kaLrm 363 (507)
T COG4287 289 KLAPYYAEGIDERLETP--LFKQLLEIIDPLAYRNTRYQLRLALPKYIVNASGDDFFVPDSANLYYDDLPGE---KALRM 363 (507)
T ss_pred ccchhHhhhHHHhhcCH--HHHHHHHhhcHHHHhhhhhhhhccccceeecccCCcccCCCccceeeccCCCc---eeeee
Confidence 0 000000110011111 122223335666655 567899999999999999999999999999863 66889
Q ss_pred eCCCCCCCC
Q 003363 797 FPNDVHGIE 805 (826)
Q Consensus 797 ~p~~~H~~~ 805 (826)
+|+..|...
T Consensus 364 vPN~~H~~~ 372 (507)
T COG4287 364 VPNDPHNLI 372 (507)
T ss_pred CCCCcchhh
Confidence 999999875
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.91 E-value=15 Score=37.51 Aligned_cols=143 Identities=12% Similarity=0.092 Sum_probs=76.1
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
..--+||+++|++..+. +..+......+-.|.-+ ||.++. ++....++|..
T Consensus 294 RTAnlwDVEtge~v~~L-tGHd~ELtHcstHptQr-----LVvTsS--------------rDtTFRLWDFR--------- 344 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNIL-TGHDSELTHCSTHPTQR-----LVVTSS--------------RDTTFRLWDFR--------- 344 (481)
T ss_pred ccceeeeeccCceeccc-cCcchhccccccCCcce-----EEEEec--------------cCceeEeccch---------
Confidence 44567899999987652 33333455666667655 777663 33344555652
Q ss_pred hhhcCCCCCCccee-cCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeee
Q 003363 353 ELKESSSEDLPVVN-LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 431 (826)
Q Consensus 353 ~~~~~~~~~~~~~~-Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 431 (826)
+.-.... ...+...+.+..|.-|.+ ++-.+.+ ..+.+||+..-..- +..|-
T Consensus 345 -------eaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDD-----------rTvKvWdLrNMRsp--------lATIR- 396 (481)
T KOG0300|consen 345 -------EAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDD-----------RTVKVWDLRNMRSP--------LATIR- 396 (481)
T ss_pred -------hhcceeeeecccccceeEEEEecCCc-eeecCCC-----------ceEEEeeeccccCc--------ceeee-
Confidence 2222223 334456678888887765 4433322 45788887652221 00100
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecC
Q 003363 432 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 485 (826)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~ 485 (826)
-++....+..+..+..|.+ ...+.++..+|+.+..+-++..
T Consensus 397 ----------tdS~~NRvavs~g~~iIAi---PhDNRqvRlfDlnG~RlaRlPr 437 (481)
T KOG0300|consen 397 ----------TDSPANRVAVSKGHPIIAI---PHDNRQVRLFDLNGNRLARLPR 437 (481)
T ss_pred ----------cCCccceeEeecCCceEEe---ccCCceEEEEecCCCccccCCc
Confidence 0112334555544443322 2455566667887777766653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 826 | ||||
| 2qzp_A | 562 | Crystal Structure Of Mutation Of An Acylptide Hydro | 2e-12 | ||
| 1ve6_A | 582 | Crystal Structure Of An Acylpeptide HydrolaseESTERA | 2e-12 | ||
| 2hu8_A | 582 | Binding Of Inhibitors By Acylaminoacyl Peptidase Le | 3e-12 | ||
| 3o4j_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 6e-12 | ||
| 3o4h_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 2e-11 | ||
| 3azo_A | 662 | Crystal Structure Of Puromycin Hydrolase Length = 6 | 2e-11 | ||
| 2qr5_A | 582 | Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mut | 2e-11 | ||
| 2ecf_A | 741 | Crystal Structure Of Dipeptidyl Aminopeptidase Iv F | 1e-10 | ||
| 2z3w_A | 706 | Prolyl Tripeptidyl Aminopeptidase Mutant E636a Leng | 2e-09 | ||
| 2d5l_A | 706 | Crystal Structure Of Prolyl Tripeptidyl Aminopeptid | 2e-09 | ||
| 2dcm_A | 706 | The Crystal Structure Of S603a Mutated Prolyl Tripe | 4e-09 | ||
| 2gbc_A | 730 | Native Dpp-Iv (Cd26) From Rat Length = 730 | 5e-09 | ||
| 1z68_A | 719 | Crystal Structure Of Human Fibroblast Activation Pr | 6e-09 | ||
| 1orv_A | 728 | Crystal Structure Of Porcine Dipeptidyl Peptidase I | 4e-08 | ||
| 4a5s_A | 740 | Crystal Structure Of Human Dpp4 In Complex With A N | 5e-08 | ||
| 3q8w_A | 732 | A B-Aminoacyl Containing Thiazolidine Derivative An | 6e-08 | ||
| 3nox_A | 753 | Crystal Structure Of Human Dpp-Iv In Complex With S | 6e-08 | ||
| 2g5p_A | 726 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 6e-08 | ||
| 1j2e_A | 740 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 6e-08 | ||
| 2jid_A | 736 | Human Dipeptidyl Peptidase Iv In Complex With 1-(3, | 6e-08 | ||
| 1x70_A | 728 | Human Dipeptidyl Peptidase Iv In Complex With A Bet | 6e-08 | ||
| 1n1m_A | 728 | Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A | 6e-08 | ||
| 2rgu_A | 734 | Crystal Structure Of Complex Of Human Dpp4 And Inhi | 6e-08 | ||
| 2bgr_A | 738 | Crystal Structure Of Hiv-1 Tat Derived Nonapeptides | 6e-08 | ||
| 1u8e_A | 728 | Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F Leng | 6e-08 | ||
| 3ccb_A | 740 | Crystal Structure Of Human Dpp4 In Complex With A B | 6e-08 | ||
| 2rip_A | 729 | Structure Of Dppiv In Complex With An Inhibitor Len | 6e-08 | ||
| 1pfq_A | 731 | Crystal Structure Of Human Apo Dipeptidyl Peptidase | 6e-08 | ||
| 3qbj_A | 748 | Crystal Structure Of Dipeptidyl Peptidase Iv In Com | 6e-08 | ||
| 1r9n_A | 739 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 6e-08 | ||
| 2qjr_A | 748 | Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf | 6e-08 | ||
| 2onc_A | 731 | Crystal Structure Of Human Dpp-4 Length = 731 | 7e-08 | ||
| 2qt9_A | 766 | Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A | 7e-08 | ||
| 1r9m_A | 733 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 7e-08 | ||
| 3azp_A | 662 | Crystal Structure Of Puromycin Hydrolase S511a Muta | 2e-07 | ||
| 2bkl_A | 695 | Structural And Mechanistic Analysis Of Two Prolyl E | 7e-06 | ||
| 4hvt_A | 711 | Structure Of A Post-Proline Cleaving Enzyme From Ri | 1e-04 |
| >pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide HydrolaseESTERASE FROM AEROPYRUM PERNIX K1 Length = 562 | Back alignment and structure |
|
| >pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM Aeropyrum Pernix K1 Length = 582 | Back alignment and structure |
|
| >pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase Length = 662 | Back alignment and structure |
|
| >pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant Length = 582 | Back alignment and structure |
|
| >pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From Stenotrophomonas Maltophilia Length = 741 | Back alignment and structure |
|
| >pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Length = 706 | Back alignment and structure |
|
| >pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase From Porphyromonas Gingivalis Length = 706 | Back alignment and structure |
|
| >pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl Aminopeptidase Complexed With Substrate Length = 706 | Back alignment and structure |
|
| >pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat Length = 730 | Back alignment and structure |
|
| >pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein Alpha Length = 719 | Back alignment and structure |
|
| >pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv (Cd26) Length = 728 | Back alignment and structure |
|
| >pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval Heterocyclic Dpp4 Inhibitor Length = 740 | Back alignment and structure |
|
| >pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv Complex Length = 732 | Back alignment and structure |
|
| >pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With Sa-(+)-(6- (Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1, 2-A]pyrimidin- 2-Yl)(Morpholino)methanone Length = 753 | Back alignment and structure |
|
| >pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv) Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor 21ac Length = 726 | Back alignment and structure |
|
| >pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv Length = 740 | Back alignment and structure |
|
| >pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4- Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine Length = 736 | Back alignment and structure |
|
| >pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino Acid Inhibitor Length = 728 | Back alignment and structure |
|
| >pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN INHIBITOR Length = 728 | Back alignment and structure |
|
| >pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor Length = 734 | Back alignment and structure |
|
| >pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides Tat(1-9) Bound To The Active Site Of Dipeptidyl Peptidase Iv (Cd26) Length = 738 | Back alignment and structure |
|
| >pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F Length = 728 | Back alignment and structure |
|
| >pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Benzimidazole Derivative Length = 740 | Back alignment and structure |
|
| >pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor Length = 729 | Back alignment and structure |
|
| >pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv / Cd26 Length = 731 | Back alignment and structure |
|
| >pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex With Inhibitor Length = 748 | Back alignment and structure |
|
| >pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution Length = 739 | Back alignment and structure |
|
| >pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf Length = 748 | Back alignment and structure |
|
| >pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4 Length = 731 | Back alignment and structure |
|
| >pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl Cyclohexylalanine Inhibitor Length = 766 | Back alignment and structure |
|
| >pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1 Ang. Resolution. Length = 733 | Back alignment and structure |
|
| >pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant Length = 662 | Back alignment and structure |
|
| >pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl Endopeptidases: Role Of Inter-Domain Dynamics In Catalysis And Specificity Length = 695 | Back alignment and structure |
|
| >pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From Rickettsia Typhi Length = 711 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 826 | |||
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 3e-66 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 9e-63 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 3e-35 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 1e-32 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 1e-28 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 8e-26 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 5e-21 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 3e-19 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 1e-18 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 1e-18 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 2e-18 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 2e-18 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 1e-17 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 3e-17 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 1e-16 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 1e-16 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 3e-16 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 4e-16 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 5e-16 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 5e-16 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 8e-16 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 2e-14 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 8e-14 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 2e-13 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 2e-12 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 3e-12 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 4e-12 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 9e-11 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 1e-10 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 9e-10 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 8e-09 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 1e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-06 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 7e-08 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 2e-07 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 6e-07 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 4e-06 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 6e-06 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 7e-06 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 8e-06 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 1e-05 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 1e-05 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 2e-05 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 3e-05 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 7e-05 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 2e-04 | |
| 2wue_A | 291 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas | 2e-04 | |
| 1xkl_A | 273 | SABP2, salicylic acid-binding protein 2; alpha-bet | 2e-04 | |
| 2puj_A | 286 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; | 2e-04 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 2e-04 | |
| 2qjw_A | 176 | Uncharacterized protein XCC1541; putative hydrolas | 3e-04 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 3e-04 | |
| 2wfl_A | 264 | Polyneuridine-aldehyde esterase; alkaloid metaboli | 3e-04 | |
| 1iup_A | 282 | META-cleavage product hydrolase; aromatic compound | 4e-04 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 6e-04 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 6e-04 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 7e-04 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 7e-04 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 8e-04 |
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Length = 582 | Back alignment and structure |
|---|
Score = 230 bits (588), Expect = 3e-66
Identities = 105/681 (15%), Positives = 205/681 (30%), Gaps = 138/681 (20%)
Query: 158 AVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNS 217
++ G KLLVV E L+ + K P
Sbjct: 26 SLQGVVDGDKLLVVGFSEGSVNAY--LYDGGETVKLNREPINSVL----------DPHYG 73
Query: 218 DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ--GDWEED-WGETYAGKRQPS 274
+I + +T ++ + K + + G +
Sbjct: 74 VGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDR 133
Query: 275 LFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 334
+ + ++ G ++ ++ P FV G+ +
Sbjct: 134 VALYALDGGGLR------------ELARLP-------GFGFVSDIRGDLIAGLGFFGGGR 174
Query: 335 CALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 394
+L+ + + L + S SP K L
Sbjct: 175 VSLFTSNL-----SSGGLRV------------FDSGEGSFSSASISPGMKVTAGLE---- 213
Query: 395 VDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 454
+ L +D + ++ D F ++I +L D
Sbjct: 214 -----TAREARLVTVDPRDGS-----------VEDLELPSKD-FSSYRPTAITWLGYLPD 256
Query: 455 GCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQ 514
G +++ G S V I GE + + + L ++ +S P+
Sbjct: 257 GRLAVVARREGRSAVFID-----GERVEAPQG----NHGRVVLWRGKLVTSHTSLSTPPR 307
Query: 515 VKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMK-IPVKG-----VSANL 568
+ + L P R + + + V+ V +
Sbjct: 308 I---VSLPSGEP----LLEGGLP----------EDLRRSIAGSRLVWVESFDGSRVPTYV 350
Query: 569 TK--GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLI 626
+ A P P +V++HGGP + S+ A L++ G+ +++
Sbjct: 351 LESGRAPTPG----------------PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVM 394
Query: 627 VNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT 686
NYRGS G+GEE + G ++ DV A + GLA+ ++ ++G S+GG++T
Sbjct: 395 PNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTL 452
Query: 687 HLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES-YGSKGKDSFTESPSVEDLTR 745
+ P F A A + + M +D ++E G
Sbjct: 453 CALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTG-------------GSREI 499
Query: 746 FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 805
S+SPI+H+ ++K P + R P+ L+ L +G + + P+ H I
Sbjct: 500 MRSRSPINHVDRIKEPLALIHPQNASRTPLKPLLRLMGELLARGKTFEAHIIPDAGHAIN 559
Query: 806 RPQSDFESFLNIGLWFKKYCK 826
+ + L + +
Sbjct: 560 TMEDAVKILLPAVFFLATQRE 580
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Length = 662 | Back alignment and structure |
|---|
Score = 222 bits (568), Expect = 9e-63
Identities = 110/690 (15%), Positives = 223/690 (32%), Gaps = 111/690 (16%)
Query: 161 PSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVH---GSVYADGWFEGI---- 213
P+ +G LV R + +S L ++V V G +A
Sbjct: 43 PAEAGRATLVRRRADGAE--------ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL 94
Query: 214 --SWNSDETLIAYVAEEPSPSKPT--FSLGSTKGGSSDKDCNSWKGQGDW----EEDWGE 265
+ D+ L A+ + P + P + + GG D + E++
Sbjct: 95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADP-VLLPERGEVWCMAEEFTG 153
Query: 266 TYAGKRQPSLFVININSGEVQAVKGIPKSLS-----VGQVVWAPLNEGLHQYLVFVGWSS 320
+ L + ++ + + V +P +G + V++ W
Sbjct: 154 EGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP--DG--RQAVWLAWDH 209
Query: 321 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFS 380
P ++ + + + + + ++
Sbjct: 210 P----------RMPWEGTELKTARVTEDGRFADTRTLLGGPE---------EAIAQAEWA 250
Query: 381 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 440
PDG L+ + D + +LHR+D T + + E P
Sbjct: 251 PDGS-LIVAT-----D---RTGWWNLHRVDPATG----------AATQLCRREEEFAGPL 291
Query: 441 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGD 500
P ++ + V+ ++ SGEL+ + ++ +L T+ G
Sbjct: 292 WTPGMRWFAP---LANGLIAVVHGKGAAVLGILDPESGELVDAAGPWTEWAATL-TVSGT 347
Query: 501 NIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMK-I 559
+ V++SP +V +D + + + + +
Sbjct: 348 RAVGVAASPRTAYEV---VELDTVTGRARTIGARHTD----------PVDPAYYPEPQIR 394
Query: 560 PVKG-----VSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSL 614
+ A++ P F + + P +V+ HGGP S + +
Sbjct: 395 TFTAPDGREIHAHIYP----PHSPDFTGPADELP----PYVVMAHGGPTSRVPAVLDLDV 446
Query: 615 AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVT 674
A+ +S G + VNY GS G+G + L G+ G DV D + + G A+ +++
Sbjct: 447 AYFTSRGIGVADVNYGGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLA 506
Query: 675 VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSF 734
V GGS GG+ + D + P+ +L D+ S+ D
Sbjct: 507 VRGGSAGGWTAASSLVS-TDVYACGTVLYPVLDLLGWADGGT-HDF------ESRYLDFL 558
Query: 735 TESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 794
S E R+ ++P++ +V+ P + L G +D P ++ A+ GV
Sbjct: 559 IGSFE-EFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCPPEQCDRFLEAVAGCGVPHAY 617
Query: 795 IVFPNDVHGIERPQSDFESFLNIGLWFKKY 824
+ F + HG R ++ + + +
Sbjct: 618 LSFEGEGHGFRRKETMVRALEAELSLYAQV 647
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* Length = 318 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 3e-35
Identities = 43/248 (17%), Positives = 80/248 (32%), Gaps = 27/248 (10%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG---- 648
P IV HG S + + GY+ + RG + ++ +G
Sbjct: 83 PAIVKYHGYNASYD--GEIHEMVNWALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTK 140
Query: 649 ----------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 698
D + A++ + + +++ V GGS GG LT + A
Sbjct: 141 GILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAA 200
Query: 699 AAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV 758
A L N + + + S+ + TE +++ L+ F ++ +V
Sbjct: 201 VADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYF---DIMNLADRV 257
Query: 759 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIG 818
K P + +G D P S L + ++ V+ H
Sbjct: 258 KVPVLMSIGLIDKVTPPSTVFAAYNHLE---TKKELKVYRYFGHEYIPAFQT-----EKL 309
Query: 819 LWFKKYCK 826
+FK+ K
Sbjct: 310 AFFKQILK 317
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} Length = 290 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 1e-32
Identities = 37/232 (15%), Positives = 70/232 (30%), Gaps = 20/232 (8%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
P ++ +HG S S +G + + RG G+ +Q++
Sbjct: 29 PGVLFVHGWGGSQHHSLVR--AREAVGLGCICMTFDLRGHEGYASMRQSV----TRAQNL 82
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
+D+ A D + + + + VVG S+GG+L+ P+ LAL
Sbjct: 83 DDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSA-----------LLTRERPVEWLALRS 131
Query: 713 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 772
+ + S D ++ ++ K + + D+
Sbjct: 132 PALYKDAH-WDQPKVSLNADPDLMDYR-RRALAPGDNLALAACAQYKGDVLLVEAENDVI 189
Query: 773 VPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824
VP YA A V H + + E + W +
Sbjct: 190 VPHPVMRNYADAFT-NARSLTSRVIAGADHALSVKEHQQEYTRALIDWLTEM 240
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} Length = 346 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 1e-28
Identities = 35/234 (14%), Positives = 74/234 (31%), Gaps = 23/234 (9%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG---- 648
P ++ HG + + + + G++++ ++ RG G ++ +
Sbjct: 109 PALIRFHGYSSNSGDWNDKLNYV---AAGFTVVAMDVRGQGGQSQDVGGVTGNTLNGHII 165
Query: 649 ------------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKF 696
D V++M + +V V+G S GG L+ P
Sbjct: 166 RGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPRVR 225
Query: 697 VAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS 756
+ L + + + + + D E + E T+ +
Sbjct: 226 KVVSEYPFLSDYKRVWDLDLAKNAYQEITDYFRLFDPRHEREN-EVFTKLGYIDVKNLAK 284
Query: 757 KVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD 810
++K + +G D P S +A A + + V+P+ H R D
Sbjct: 285 RIKGDVLMCVGLMDQVCPPS--TVFA-AYNNIQSKKDIKVYPDYGHEPMRGFGD 335
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* Length = 337 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 8e-26
Identities = 35/241 (14%), Positives = 71/241 (29%), Gaps = 32/241 (13%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS-------------------- 632
P +V G + F S+GY +++ RG
Sbjct: 96 PCVVQYIGYNGG---RGFPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQ 152
Query: 633 -LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 691
GF + + D + A++ + ++ + GGS GG + +
Sbjct: 153 YPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSAL 212
Query: 692 APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP 751
+ LC+ V D + + ++ +D
Sbjct: 213 SKKAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRD-----KEEIVFRTLSYFDG 267
Query: 752 ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 811
++ ++ K P +F +G D P S +A A ++ ++P + H
Sbjct: 268 VNFAARAKIPALFSVGLMDNICPPS--TVFA-AYNYYAGPKEIRIYPYNNHEGGGSFQAV 324
Query: 812 E 812
E
Sbjct: 325 E 325
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} Length = 446 | Back alignment and structure |
|---|
Score = 96.0 bits (238), Expect = 5e-21
Identities = 34/223 (15%), Positives = 70/223 (31%), Gaps = 17/223 (7%)
Query: 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649
P IV + G + + L+ G++++ + Y LP + +
Sbjct: 172 GPFPGIVDMFGTGGGLL----EYRASLLAGKGFAVMALAYYNYED--------LPKTMET 219
Query: 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709
+ A+++++ V ++G S GG L + A + N+
Sbjct: 220 LHLEYFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKGITAAVVINGSVANVG 279
Query: 710 LMV---GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLL 766
+ G T P + + + + ++ +FL+
Sbjct: 280 GTLRYKGETLPPVGVNRNRIKVTKDGYADIVDVLNSPLEGPDQKSFIPVERAESTFLFLV 339
Query: 767 GAQDLRVPVSNGLQYA-RALREKGVE-TKVIVFPNDVHGIERP 807
G D A + L+ G ++I +P H IE P
Sbjct: 340 GQDDHNWKSEFYANEACKRLQAHGRRKPQIICYPETGHYIEPP 382
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} Length = 422 | Back alignment and structure |
|---|
Score = 90.3 bits (223), Expect = 3e-19
Identities = 32/222 (14%), Positives = 70/222 (31%), Gaps = 17/222 (7%)
Query: 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650
P I+ + G + + L+ G++ L + Y LP + +
Sbjct: 157 PFPGIIDIFGIGGGLL----EYRASLLAGHGFATLALAYYNFED--------LPNNMDNI 204
Query: 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-- 708
+ A+ +++ + ++G S G + + + + +
Sbjct: 205 SLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKNVSATVSINGSGISGNT 264
Query: 709 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSV-EDLTRFHSKSPISHISKVKTPTIFLLG 767
A+ + IP Y + + L + + I K + P + ++G
Sbjct: 265 AINYKHSSIPPLGYDLRRIKVAFSGLVDIVDIRNALVGGYKNPSMIPIEKAQGPILLIVG 324
Query: 768 AQDLRVPVS-NGLQYARALREKGVET-KVIVFPNDVHGIERP 807
D + L+ G E ++I +P H IE P
Sbjct: 325 QDDHNWRSELYAQTVSERLQAHGKEKPQIICYPGTGHYIEPP 366
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Length = 706 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 1e-18
Identities = 71/351 (20%), Positives = 130/351 (37%), Gaps = 58/351 (16%)
Query: 472 SVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSW 531
+++ G+ +TP L DG II + SP VP+ V KG+ +
Sbjct: 386 CIDIKGGKTKDLTPESGMHRTQLSP-DGSAIIDIFQSP-TVPRKVT---VTNIGKGSHTL 440
Query: 532 LNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQ-KPFEAIFVSSSHKKDCS 590
L +P + + + + P F + KK
Sbjct: 441 LEAKNPDTGYA------MPEIRTGTIMAADGQTPLY---YKLTMPLH--FDPA--KKY-- 485
Query: 591 CDPLIVVLHGGPHSVS-LSSYSKSL----AFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 645
P+IV ++GGPH+ ++ S+ +++ GY++ V+ RGS G Q +
Sbjct: 486 --PVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHR 543
Query: 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705
++G ++ D + +D + + ++ V G S+GGF+TT+L+ D F A P
Sbjct: 544 RLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGP- 602
Query: 706 CNLALMVGTTDIPDWCYVESYGSKGKDS-FTE----SPSVEDLTRFHSKSPISHISKVKT 760
+ DW Y + E +P E+ + + + + +K
Sbjct: 603 -----------VIDWNR---Y-----AIMYGERYFDAPQ-ENPEGYDAANLLKRAGDLKG 642
Query: 761 PTIFLL--GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQS 809
+L GA D V + L + A + V+P+ H + P
Sbjct: 643 R--LMLIHGAIDPVVVWQHSLLFLDACVKARTYPDYYVYPSHEHNVMGPDR 691
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Length = 740 | Back alignment and structure |
|---|
Score = 89.9 bits (223), Expect = 1e-18
Identities = 47/242 (19%), Positives = 101/242 (41%), Gaps = 30/242 (12%)
Query: 593 PLIVVLHGGPHSVS-LSSYSKSLA--FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649
PL++ ++ GP S + + + A S+ + + RGS G++ + ++ ++G+
Sbjct: 503 PLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGT 562
Query: 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709
+V D + A MG + ++ + G S+GG++T+ ++G F A P
Sbjct: 563 FEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP----- 617
Query: 710 LMVGTTDIPDW-----CYVESY-GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTI 763
+ W Y E Y G + ++L + + + +S K
Sbjct: 618 -------VSRWEYYDSVYTERYMGLPTPE--------DNLDHYRNSTVMSRAENFKQVEY 662
Query: 764 FLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822
L+ G D V Q ++AL + GV+ + + + ++ HGI + + ++ + K
Sbjct: 663 LLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIK 722
Query: 823 KY 824
+
Sbjct: 723 QC 724
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Length = 719 | Back alignment and structure |
|---|
Score = 89.5 bits (222), Expect = 2e-18
Identities = 106/687 (15%), Positives = 215/687 (31%), Gaps = 136/687 (19%)
Query: 155 GASAVVPSPSGSKL-------LVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYAD 207
+ SP GSKL + ++ + P Q + +E + + VY +
Sbjct: 111 PIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQI-----TFNGRENKIFNGIPDWVYEE 165
Query: 208 GWF---EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWG 264
+ W+ + +AY + P + S G +
Sbjct: 166 EMLATKYALWWSPNGKFLAYAEFNDTD-IPVIAY-SYYGDEQYPRTINIP---------- 213
Query: 265 ETY--AGKRQP--SLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSS 320
Y AG + P +F+I+ + +V + Y ++ W +
Sbjct: 214 --YPKAGAKNPVVRIFIIDTTYP---------AYVGPQEVPVPAMIASSDYYFSWLTWVT 262
Query: 321 ETRKLGIKYCYNRP---CALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFF 376
+ ++ +++ R L + +E E +
Sbjct: 263 DE-RVCLQWL-KRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVST---- 316
Query: 377 PRFSPDG-KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEG 435
P FS D + S K + T+G + +++ V Q +
Sbjct: 317 PVFSYDAISYYKIFSDKDGYKHIHYIKDTV-ENAIQITSGKWE----AINIFRVTQDSLF 371
Query: 436 DCFPG---------LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA 486
+Y SI S P T L
Sbjct: 372 YSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRK-----------------------E 408
Query: 487 ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVK 546
+ + + V P +P D L + + + ++
Sbjct: 409 RCQYYTASFSDYAKYYALVCYGP-GIPISTL---HDGRTDQEIKILEENKELENALKNIQ 464
Query: 547 SLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS 606
+ I K+ V ++ + + + PL++ ++GGP S S
Sbjct: 465 L----PKEEIKKLEVDEITLWY---------KMILPPQFDRSKKY-PLLIQVYGGPCSQS 510
Query: 607 -LSSYSKSLA--FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVI 663
S ++ + S G + +V+ RG+ G++ L ++ K+G +V D +TA+ I
Sbjct: 511 VRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFI 570
Query: 664 DMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYV 723
+MG + ++ + G S+GG++++ + F A P + W Y
Sbjct: 571 EMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAP------------VSSWEYY 618
Query: 724 ESYGSKGKDSFTE----SPSVED-LTRFHSKSPISHISKVKTPTIFLL-GAQDLRVPVSN 777
S +TE P+ +D L + + + ++ + L+ G D V N
Sbjct: 619 ASV-------YTERFMGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTADDNVHFQN 671
Query: 778 GLQYARALREKGVETKVIVFPNDVHGI 804
Q A+AL V+ + + + + HG+
Sbjct: 672 SAQIAKALVNAQVDFQAMWYSDQNHGL 698
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} Length = 405 | Back alignment and structure |
|---|
Score = 87.8 bits (217), Expect = 2e-18
Identities = 38/247 (15%), Positives = 82/247 (33%), Gaps = 34/247 (13%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
++V+ GG S + Y++L+V+ G G+ Q L +V ++
Sbjct: 160 DTLIVVGGGDTSRE-DLFYMLGYSGWEHDYNVLMVDLPG---QGKNPNQGLHFEVDARAA 215
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL---- 708
I ++D A K+ + G S GG+ T + + A A P+ ++
Sbjct: 216 ------ISAILDWYQAPTEKIAIAGFSGGGYFTAQAVEKDKR-IKAWIASTPIYDVAEVF 268
Query: 709 -ALMVGTTDIPDWCYVESYGSKGKDS-------------FTESPSVEDLTRFHSKSPISH 754
P + F + + + ++ I
Sbjct: 269 RISFSTALKAPKTILKWGSKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVD 328
Query: 755 ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESF 814
+K+ P++FL+GA + + +++G++ + F ++ Q +
Sbjct: 329 YNKIDVPSLFLVGAGEDSELMRQSQVLYDNFKQRGIDVTLRKFSSESGADAHCQVN---- 384
Query: 815 LNIGLWF 821
N L
Sbjct: 385 -NFRLMH 390
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* Length = 277 | Back alignment and structure |
|---|
Score = 82.6 bits (204), Expect = 1e-17
Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 27/219 (12%)
Query: 593 PLIVVLHGGPHS-VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
P++++ GG + S + + + G +++NY+ L V
Sbjct: 36 PIMIICPGGGFTYHSGREEAPIATRMMAAGMHTVVLNYQ---------LIVGDQSVYPWA 86
Query: 652 VNDVLTAI----DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707
+ + I + + ++ + G S GG + G A +
Sbjct: 87 LQQLGATIDWITTQASAHHV-DCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLD--- 142
Query: 708 LALMVGTTDIPDWCYVESYG-SKGKDSFTESPSVEDLTRFHSK--SPISHISKVKTPTIF 764
+ Y F + + + ++ + ++ P
Sbjct: 143 -----HYQGQHAAI-ILGYPVIDLTAGFPTTSAARNQITTDARLWAAQRLVTPASKPAFV 196
Query: 765 LLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803
A D VP N L+Y +A+ + V T +F + +HG
Sbjct: 197 WQTATDESVPPINSLKYVQAMLQHQVATAYHLFGSGIHG 235
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} Length = 276 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 3e-17
Identities = 39/216 (18%), Positives = 72/216 (33%), Gaps = 32/216 (14%)
Query: 593 PLIVVLHGGPHS-VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
P I++ GG + +S + GY +L++NY + L Q+
Sbjct: 44 PAIIICPGGGYQHISQRESDPLALAFLAQGYQVLLLNYT--VMNKGTNYNFLS-----QN 96
Query: 652 VNDVLTAI----DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707
+ +V + + + NP +V ++G S GG L
Sbjct: 97 LEEVQAVFSLIHQNHKEWQI-NPEQVFLLGCSAGGHLAAWYGNSEQIHRPKG-------- 147
Query: 708 LALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLG 767
+ L T D + +E+++ + + ++ PT
Sbjct: 148 VILCYPVTSFTFGWP--------SDLSHFNFEIENISEY---NISEKVTSSTPPTFIWHT 196
Query: 768 AQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803
A D VP+ N L+Y L + V + F + HG
Sbjct: 197 ADDEGVPIYNSLKYCDRLSKHQVPFEAHFFESGPHG 232
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 1e-16
Identities = 74/375 (19%), Positives = 142/375 (37%), Gaps = 64/375 (17%)
Query: 472 SVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSW 531
+V + G+ R++ A S S + + S+ P + +AN +
Sbjct: 410 AVPLQGGQPQRLSKAPGMHSASFAR-NASVYVDSWSNN-STPPQIE---LFRANGEKIAT 464
Query: 532 LNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGA-------QKPFEAIFVSSS 584
L + + ++ + PV+ + G KP F +
Sbjct: 465 LVEN-------DLADPKHPYARYREAQRPVEFGTLTAADGKTPLNYSVIKPAG--FDPA- 514
Query: 585 HKKDCSCDPLIVVLHGGPHS--V----SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEE 638
K+ P+ V ++GGP S V +L+ GY + ++ RG+ G +
Sbjct: 515 -KRY----PVAVYVYGGPASQTVTDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRD 569
Query: 639 ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 698
+L GK G+ +V D L + + +P+++ V G S+GG++T L+ +A D +
Sbjct: 570 FGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYAC 629
Query: 699 AAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDS-FTE----SPSVEDLTRFHSKSPIS 753
A P + DW Y DS +TE P+ + + ++
Sbjct: 630 GVAGAP------------VTDWGL---Y-----DSHYTERYMDLPA-RNDAGYREARVLT 668
Query: 754 HISKVKTPTIFLL--GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 811
HI +++P LL G D V +N AL+++G +++ +P HG+ +
Sbjct: 669 HIEGLRSP--LLLIHGMADDNVLFTNSTSLMSALQKRGQPFELMTYPGAKHGLSGADALH 726
Query: 812 ESFLNIGLWFKKYCK 826
+ + + K
Sbjct: 727 R-YRVAEAFLGRCLK 740
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A Length = 380 | Back alignment and structure |
|---|
Score = 82.1 bits (202), Expect = 1e-16
Identities = 32/222 (14%), Positives = 58/222 (26%), Gaps = 53/222 (23%)
Query: 593 PLIVVLHGGPHSVS----------LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQS 642
PL+V LHG + + + +L + +
Sbjct: 175 PLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCPPNSSWSTLFTDR 234
Query: 643 LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR 702
+ + V+ I ++D + +++ + G S GG+ T I + P+ F AA
Sbjct: 235 ENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIP- 293
Query: 703 NPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPT 762
+ G D+ I P
Sbjct: 294 --------ICGGGDVSKV-----------------------------ERIKD-----IPI 311
Query: 763 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
D VPV N + L E G + + +
Sbjct: 312 WVFHAEDDPVVPVENSRVLVKKLAEIGGKVRYTEYEKGFMEK 353
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Length = 723 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 3e-16
Identities = 42/244 (17%), Positives = 93/244 (38%), Gaps = 32/244 (13%)
Query: 593 PLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649
PL++V+ G P S S++ S +SS G ++ + RGS G + L + ++G
Sbjct: 497 PLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGL 556
Query: 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPL 705
+ D + A+ ++ + ++V V G +GG+L+T+++ + F +A +P
Sbjct: 557 LEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSP- 615
Query: 706 CNLALMVGTTDIPDWCYVESYGSKGKDSFTE----SPSVEDLTRFHSKSPISHISKVKTP 761
I D+ S F+E D + +S ++
Sbjct: 616 -----------ITDFKLYASA-------FSERYLGLHG-LDNRAYEMTKVAHRVSALEEQ 656
Query: 762 TIFLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 820
++ D ++ + + L + ++P++ H + +I +
Sbjct: 657 QFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQHLYRSIINF 716
Query: 821 FKKY 824
F +
Sbjct: 717 FVEC 720
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 Length = 386 | Back alignment and structure |
|---|
Score = 80.4 bits (198), Expect = 4e-16
Identities = 33/214 (15%), Positives = 64/214 (29%), Gaps = 23/214 (10%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
P +++L G + + + G + + G GE K + D
Sbjct: 153 PAVIMLGGLESTKE--ESFQMENLVLDRGMATATFDGPGQ---GE----MFEYKRIAGDY 203
Query: 653 NDVLTAI-DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711
+A+ D + + + V+G S GG P A + +L
Sbjct: 204 EKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEPR-LAACISWGGFSDLDYW 262
Query: 712 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK-SPISHISKVKTPTIFLLGAQD 770
T + + + E H+ +S++ PT L G D
Sbjct: 263 DLETPLTKESWKYVSKVDTLE--------EARLHVHAALETRDVLSQIACPTYILHGVHD 314
Query: 771 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
VP+S + + + ++V + H
Sbjct: 315 -EVPLSFVDTVLELVPAEHLN--LVVEKDGDHCC 345
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 Length = 238 | Back alignment and structure |
|---|
Score = 77.5 bits (190), Expect = 5e-16
Identities = 32/222 (14%), Positives = 61/222 (27%), Gaps = 31/222 (13%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRG---SLGFGEEALQSLPGKVGS 649
L++ LHG S L + G+ LL + G + +
Sbjct: 25 ALLLALHGLQGS--KEHILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVY 82
Query: 650 QDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708
+ V + + + GGS G F+ L+ + A
Sbjct: 83 RVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVLA-------- 134
Query: 709 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLG 767
+G+ + + + P + P + L G
Sbjct: 135 --FIGSGFPMKL------------PQGQVVEDPGVLALYQAPPATRGEAYGGVPLLHLHG 180
Query: 768 AQDLRVPVSNGLQYARALREKGVETKV--IVFPNDVHGIERP 807
++D VP++ + ALR E ++ V H +
Sbjct: 181 SRDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGHTLTPL 222
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} Length = 283 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 5e-16
Identities = 43/243 (17%), Positives = 82/243 (33%), Gaps = 33/243 (13%)
Query: 593 PLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
P I+++ GG + ++ + GY + Y L + +G
Sbjct: 51 PAIIIVPGGSYTHIPVAQAESLAMAFAGHGYQAFYLEYT---------LLTDQQPLGLAP 101
Query: 652 VNDVLTAI----DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC- 706
V D+ A+ H + + +P ++T G S GG + + P
Sbjct: 102 VLDLGRAVNLLRQHAAEWHI-DPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAML 160
Query: 707 --NLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIF 764
N ++ P + + T +P+ +L + H++ PT
Sbjct: 161 KPNNVVLG----YPVISPLLGFPKDDATLATWTPTPNEL------AADQHVNSDNQPTFI 210
Query: 765 LLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI-----ERPQSDFESFLNIGL 819
A D VP +N L YA AL + ++ VF + HG+ + + ++
Sbjct: 211 WTTADDPIVPATNTLAYATALATAKIPYELHVFKHGPHGLALANAQTAWKPDANQPHVAH 270
Query: 820 WFK 822
W
Sbjct: 271 WLT 273
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* Length = 251 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 8e-16
Identities = 31/245 (12%), Positives = 69/245 (28%), Gaps = 37/245 (15%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS---------LGFGEEALQSL 643
PL +++HG L+ +G + L + G +
Sbjct: 28 PLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFEDHTLFKW----- 82
Query: 644 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 703
+ ++L +D+ + + + G S GG D A +
Sbjct: 83 --------LTNILAVVDYAKKLDFVTD--IYMAGHSQGGLSVMLAAAMERDIIKALIPLS 132
Query: 704 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESP----SVEDLTRFHSKSPISHISKVK 759
P + + T ++ + D++ V + K
Sbjct: 133 PAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVAQTI---RVEDFVDKYT 189
Query: 760 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 819
P + + G QD VP + +++ + K++ P D H + +
Sbjct: 190 KPVLIVHGDQDEAVPYEASVAFSKQYKNC----KLVTIPGDTHCYDHHLELVTE--AVKE 243
Query: 820 WFKKY 824
+ +
Sbjct: 244 FMLEQ 248
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A Length = 415 | Back alignment and structure |
|---|
Score = 75.1 bits (184), Expect = 2e-14
Identities = 31/234 (13%), Positives = 68/234 (29%), Gaps = 22/234 (9%)
Query: 595 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 654
+V++ G S+ + L+ ++L V+ G + L ++D +
Sbjct: 195 VVIVSAGLDSLQTDMWRLFRDHLAKHDIAMLTVDMPSV---GYSSKYPL-----TEDYSR 246
Query: 655 VLTA-IDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 713
+ A ++ + + + +V ++G GG L +K A +
Sbjct: 247 LHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASP 306
Query: 714 TT--DIPDWCYVESYGSK-GKDSFTESPSVEDLTRF-HSKSPISHISKVKTPTIFLLGAQ 769
+P Y++ S+ GK + + K K P + +
Sbjct: 307 QKLQQMPKM-YLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEG 365
Query: 770 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823
D P S+ A + + +S W +
Sbjct: 366 DPVSPYSDNQMVAFFSTYG---KAKKISSKTITQGYE-----QSLDLAIKWLED 411
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 Length = 273 | Back alignment and structure |
|---|
Score = 71.6 bits (175), Expect = 8e-14
Identities = 25/233 (10%), Positives = 67/233 (28%), Gaps = 38/233 (16%)
Query: 592 DPLIVVLHGG------PHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLP 644
++ +HGG + + ++ + + YR S P
Sbjct: 41 REAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLS-----------P 89
Query: 645 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK--------F 696
+++ D ++ I ++ + + +VG S G ++ D
Sbjct: 90 EITNPRNLYDAVSNITRLVKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQL 147
Query: 697 VAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISH-- 754
+ + L+ G + + + Y D FT + + + +
Sbjct: 148 QMLGLLQIVKRVFLLDGIYSLKEL--LIEYPEY--DCFTRLAFPDGIQMYEEEPSRVMPY 203
Query: 755 ----ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803
+S+ + D + + L++ + K+ + +H
Sbjct: 204 VKKALSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHN 256
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 Length = 262 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 2e-13
Identities = 28/200 (14%), Positives = 58/200 (29%), Gaps = 28/200 (14%)
Query: 593 PLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
L V +HGG + SS+S S G+++ + +Y P S+
Sbjct: 64 GLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELC-----------PEVRISEI 112
Query: 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711
+ A+ + + G S GG L ++ A + N+ +
Sbjct: 113 TQQISQAVTAAAKE---IDGPIVLAGHSAGGHLVARMLDPEVLP---EAVGARIRNVVPI 166
Query: 712 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 771
+D+ + D ++SP+ ++ +G +
Sbjct: 167 SPLSDLRPL----------LRTSMNEKFKMDADAAIAESPVEMQNRYDAKVTVWVGGAER 216
Query: 772 RVPVSNGLQYARALREKGVE 791
+ + A V
Sbjct: 217 PAFLDQAIWLVEAWDADHVI 236
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 Length = 305 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 2e-12
Identities = 29/233 (12%), Positives = 60/233 (25%), Gaps = 24/233 (10%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG---- 648
I++ G + + ++ +LS+ G+ + + +G S G +
Sbjct: 36 NTILIASG--FARRMDHFAGLAEYLSTNGFHVFRYDSLHHVG------LS-SGSIDEFTM 86
Query: 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKF-VAAAARNPLCN 707
+ N + T + + ++ S + +I F + A L +
Sbjct: 87 TTGKNSLCTVYHWLQT---KGTQNIGLIAASLSARVAYEVISDLELSFLITAVGVVNLRD 143
Query: 708 LALMVGTTDIPDWCYVESYGSKGKDSFTESPSV--EDLTRFHS---KSPISHISKVKTPT 762
D E + V D H S + ++ P
Sbjct: 144 TLEKALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPL 203
Query: 763 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFL 815
I D V +R K+ H + +F
Sbjct: 204 IAFTANNDDWVKQEEVYDMLAHIRTG--HCKLYSLLGSSHDLGENLVVLRNFY 254
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A Length = 303 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 3e-12
Identities = 44/235 (18%), Positives = 71/235 (30%), Gaps = 32/235 (13%)
Query: 593 PLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
PL V +HGG + +S + L GY + +++Y P Q
Sbjct: 83 PLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDYNLC-----------PQVTLEQL 131
Query: 652 VNDVLTAIDHVIDMGLA-NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710
+ ++ + D S +T G G L ++ + A + L
Sbjct: 132 MTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQIL--MRPNVITAQRSKMVWALIF 189
Query: 711 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKT-----PTIFL 765
+ G D+ + +ES K E S SP+ T +
Sbjct: 190 LCGVYDLRELSNLESVNPKNILGLNER-------NIESVSPMLWEYTDVTVWNSTKIYVV 242
Query: 766 LGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH-----GIERPQSDFESFL 815
D + YA LR+KG + +F H SD FL
Sbjct: 243 AAEHDSTTFIEQSRHYADVLRKKGYKASFTLFKGYDHFDIIEETAIDDSDVSRFL 297
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} Length = 223 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 4e-12
Identities = 40/235 (17%), Positives = 70/235 (29%), Gaps = 48/235 (20%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
+++ HG S S ++ +A L G + L+++ +
Sbjct: 36 GIVLFAHGSGSS-RYSPRNRYVAEVLQQAGLATLLIDLLTQEEEEIDLRTRHLRFDIGLL 94
Query: 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711
+ ++ A D + KV G S GG + P+ A +R +LA
Sbjct: 95 ASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGGRPDLA-- 152
Query: 712 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 771
S + VK PT+ ++G DL
Sbjct: 153 ----------------------------------------PSALPHVKAPTLLIVGGYDL 172
Query: 772 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826
V N AL + ++++ P H E P + WF Y +
Sbjct: 173 PVIAMN----EDALEQLQTSKRLVIIPRASHLFEEPGALTAVAQLASEWFMHYLR 223
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} Length = 275 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 9e-11
Identities = 34/257 (13%), Positives = 66/257 (25%), Gaps = 46/257 (17%)
Query: 593 PLIVVLHGGPHSV-SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
+IV +HGG + S + + Y L+ ++YR P
Sbjct: 30 GVIVYIHGGGLMFGKANDLSPQYIDILTEHYDLIQLSYRLL-----------PEVSLDCI 78
Query: 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA------AARNPL 705
+ DV + D + + + G S G +L+ + V P
Sbjct: 79 IEDVYASFDAIQS--QYSNCPIFTFGRSSGAYLSLLIARDRDIDGVIDFYGYSRINTEPF 136
Query: 706 CNLALMVG--------------------TTDIPDWCYVESYGSKGKDSFTESPSVEDLTR 745
D ++ ++G + ++ D T
Sbjct: 137 KTTNSYYAKIAQSINETMIAQLTSPTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTD 196
Query: 746 FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG-I 804
+ K P D VPV + + + + + H
Sbjct: 197 -SKYNIAPDELKTLPPVFIAHCNGDYDVPV----EESEHIMNHVPHSTFERVNKNEHDFD 251
Query: 805 ERPQSDFESFLNIGLWF 821
RP + + + F
Sbjct: 252 RRPNDEAITIYRKVVDF 268
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A Length = 254 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-10
Identities = 42/238 (17%), Positives = 79/238 (33%), Gaps = 38/238 (15%)
Query: 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFG--EEALQSLPGKVGS 649
D +++L G S + + L L+ ++++ + RG +G + P
Sbjct: 23 DHAVLLLPGMLGS-GETDFGPQLKNLNKKLFTVVAWDPRG---YGHSRPPDRDFPADFFE 78
Query: 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK-----FVAAAARNP 704
+D D + + + KV+++G S GG + P A A
Sbjct: 79 RDAKDAVDLMKA---LKFK---KVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVT 132
Query: 705 LCNLALMVGTTDIPDWC------YVESYGSKGKDSFTESPS-VEDLTRFHSKSPISHI-- 755
+ + G D+ W Y G D F + D R P +I
Sbjct: 133 DEDSMIYEGIRDVSKWSERTRKPLEALY---GYDYFARTCEKWVDGIRQFKHLPDGNICR 189
Query: 756 ---SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG--IERPQ 808
+V+ P + + G +D VP + + + KG + + P H +
Sbjct: 190 HLLPRVQCPALIVHGEKDPLVPRFHADFIHKHV--KGSR--LHLMPEGKHNLHLRFAD 243
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* Length = 270 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 9e-10
Identities = 28/238 (11%), Positives = 66/238 (27%), Gaps = 25/238 (10%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRG---SLG-FGEEALQSLPGKVG 648
+ ++ HG + + S + L + + ++ G S G F +
Sbjct: 47 DMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFENMTV-------- 98
Query: 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708
++ D +++V + + +VG + GG + + L G PD P L
Sbjct: 99 LNEIEDANAILNYVKTDP--HVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATL 156
Query: 709 ALMVGTTDIPDWCYVESY--GSKGKDSFTESPS-VEDLTRFHSKSPISHISKVKTPTIFL 765
+ Y + T + + ++ P +
Sbjct: 157 KGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLP---IYEVSAQFTKPVCLI 213
Query: 766 LGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823
G D V + +Y + + + + H + + +
Sbjct: 214 HGTDDTVVSPNASKKYDQIYQNS----TLHLIEGADHCFSDSYQK-NAVNLTTDFLQN 266
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} Length = 274 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 8e-09
Identities = 33/241 (13%), Positives = 65/241 (26%), Gaps = 48/241 (19%)
Query: 593 PLIVVLHGGPHSV-SLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650
+V LHGG + S + L L S GY++L ++Y L +
Sbjct: 28 NYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLALDYL--LAP--NT--KID-----H 76
Query: 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710
+ + + + + + G S GG+L L Q + L
Sbjct: 77 ILRTLTETFQLLNEEII-QNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQF------LVN 129
Query: 711 MVGTTDI-----PDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFL 765
G TD+ P ++ +K + ++ V D + + F
Sbjct: 130 FYGYTDLEFIKEPRKLLKQAISAKEIAAIDQTKPVWDDPFLSRYLLYHYSIQQALLPHFY 189
Query: 766 LGAQDLRVPVSN-----------------------GLQYARALREKGVETKVIVFPNDVH 802
++ +Y++ + E+ H
Sbjct: 190 GLPENGDWSAYALSDETLKTFPPCFSTASSSDEEVPFRYSKKIGRTIPESTFKAVYYLEH 249
Query: 803 G 803
Sbjct: 250 D 250
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} Length = 270 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 1e-08
Identities = 44/240 (18%), Positives = 85/240 (35%), Gaps = 34/240 (14%)
Query: 595 IVVLHG-GPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD- 651
++++HG S+ + LA + GY++ + +G G E + + D
Sbjct: 43 VLLVHGFTGTPHSM----RPLAEAYAKAGYTVCLPRLKGH-GTHYEDM----ERTTFHDW 93
Query: 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711
V V + + V G S GG LT +L PD + A+
Sbjct: 94 VASVEEGYGWLKQRC----QTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIPAIA 149
Query: 712 VGTTDIPDWC-YVESYGSKGKDSFTE--------SPSVEDLTRFHSKSPISHISKVKTPT 762
G T + Y++S GS K+ + + S+ L R +++ + + ++ P
Sbjct: 150 AGMTGGGELPRYLDSIGSDLKNPDVKELAYEKTPTASLLQLARLMAQTK-AKLDRIVCPA 208
Query: 763 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI----ERPQ--SDFESFLN 816
+ + +D VP N + + E ++ N H ++P F
Sbjct: 209 LIFVSDEDHVVPPGNADIIFQGISSTEKE--IVRLRNSYHVATLDYDQPMIIERSLEFFA 266
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 5e-08
Identities = 96/549 (17%), Positives = 165/549 (30%), Gaps = 139/549 (25%)
Query: 32 HRHTRFTVAKPAYFSYKR-LSVFLAMDASKAAPAKQVSSVLDA--TAEEEYASLSKLLQD 88
H H F + Y YK LSVF K V + + + EE + ++
Sbjct: 4 HHHMDFETGEHQY-QYKDILSVFED-AFVDNFDCKDVQDMPKSILSKEE----IDHIIMS 57
Query: 89 FTNISSIDKA-WTFNSGNGNGTQAMF-SISQPNLLANKRKKFMLSTVISKENENSVTFQW 146
+S + WT S Q + + N KF++S I E
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY------KFLMSP-IKTEQR------- 103
Query: 147 APFPVEMTGASAVVP----SPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHG 202
P + + +K V R + ++ L +L +V + G
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSR-LQPYLKLRQAL---LELRPAKNV--LIDG 157
Query: 203 -----------SVYADGWFE-----GISW------NSDETLIAYVAEEPSPSKPTFSLGS 240
V + I W NS ET++ + + P ++
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR- 216
Query: 241 TKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQP-SLFVI-NINSGEVQAVKGIPKSLSVG 298
SD N + + K L V+ N+ + +
Sbjct: 217 -----SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK-------------- 257
Query: 299 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELK--E 356
W N + L+ + T L + L ++L E L LK +
Sbjct: 258 --AWNAFNLSC-KILLTTRFKQVTDFLSAATTTHIS--LDHHSMTLTPDEVKSLLLKYLD 312
Query: 357 SSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID-WPTNG 415
+DLP E +++ +P + + A+ S D L D W
Sbjct: 313 CRPQDLPR----EVLTT------NP---RRLSIIAE--------SIRDGLATWDNWKHV- 350
Query: 416 NFSSLEKIVDVIPVVQCAEGDCFPGLYSS-SIL-SNPWLSDGCTMLLSSIWGSS-----Q 468
N L I++ + E + ++ S+ + + T+LLS IW
Sbjct: 351 NCDKLTTIIESS--LNVLEPAEYRKMFDRLSVFPPSAHIP---TILLSLIWFDVIKSDVM 405
Query: 469 VIISVNVSSGELLRITPAESNFSWSLLTLD----GDNIIAVSSSPVD------------- 511
V+++ L+ P ES S + L+ +N A+ S VD
Sbjct: 406 VVVNKLHKYS-LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 512 VPQVKYGYF 520
+P YF
Sbjct: 465 IPPYLDQYF 473
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 3e-06
Identities = 74/493 (15%), Positives = 147/493 (29%), Gaps = 174/493 (35%)
Query: 407 HRIDWPTNGNFSSLEKIVDVIPVVQCA---EGDC-----FP-GLYSSS----ILSNPWLS 453
H +D+ T + + D++ V + A DC P + S I+ +
Sbjct: 5 HHMDFETGEHQYQYK---DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 454 DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVP 513
G L ++ + ++ V E+LRI N+ + L++ + + P
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFV--EEVLRI-----NYKF-LMS-------PIKTEQRQ-P 105
Query: 514 QVKYGYFVDKANKGTWSWLNVSSP--ISRCPEKVKSLLSSRQFSIMKI-PVKGVSANLTK 570
+ ++++ ++ ++ V + +SR + L RQ +++++ P K V +
Sbjct: 106 SMMTRMYIEQRDR-LYNDNQVFAKYNVSR-LQPYLKL---RQ-ALLELRPAKNVLIDGVL 159
Query: 571 GAQKPFEAIFVSSSHK--------------KDCSCDPLIV------VLHGGPHSVSLSSY 610
G+ K + A+ V S+K K+C+ ++ + P+ S S +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 611 SKSLA------------FLSSVGY--SLLIVNYRGSLGFGEEALQSLPGKVGSQDVND-- 654
S ++ L S Y LL++ +V +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLL----------------------NVQNAK 257
Query: 655 ------------VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHL-------IGQAPDK 695
+ T V D A + + + + P
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 696 F-VAAAARNPLCNLAL-MVGTT--DIPD-WCYVESYGSKGKDSFTESPSVEDLTRFHSKS 750
NP L ++ + D W + + ES S+ L
Sbjct: 318 LPREVLTTNPR---RLSIIAESIRDGLATWDNWKHVNCDKLTTIIES-SLNVLE------ 367
Query: 751 PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD 810
P + R + L VFP H I P
Sbjct: 368 ----------PA-------EYR-------KMFDRL---------SVFPPSAH-I--P--- 388
Query: 811 FESFLNIGLWFKK 823
L++ +WF
Sbjct: 389 -TILLSL-IWFDV 399
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A Length = 251 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 7e-08
Identities = 39/236 (16%), Positives = 70/236 (29%), Gaps = 28/236 (11%)
Query: 595 IVVLHG-GPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRG-SLGFGEEALQSLPGKVGSQD 651
+V+LH + +A L GY + + + G + L K
Sbjct: 25 VVLLHAYTGSPNDM----NFMARALQRSGYGVYVPLFSGHGTVEPLDIL----TKGNPDI 76
Query: 652 -VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710
+ A+ H+ +KV V G S GG + P +P+
Sbjct: 77 WWAESSAAVAHMTAKY----AKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKH 132
Query: 711 MVGTTDIPDWCYVESYGSKGKDSFTE----SPSVEDLTRFHSKSPISHISKVKTPTIFLL 766
+ + Y+ K +S + + +F + + + ++ VK PT
Sbjct: 133 HLVPGFLKYAEYMNRLAGKSDESTQILAYLPGQLAAIDQF-ATTVAADLNLVKQPTFIGQ 191
Query: 767 GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI----ERPQ--SDFESFLN 816
QD V Q AL + + H I D +F+
Sbjct: 192 AGQDELVDGRLAYQLRDALI-NAARVDFHWYDDAKHVITVNSAHHALEEDVIAFMQ 246
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} Length = 241 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 39/222 (17%), Positives = 69/222 (31%), Gaps = 52/222 (23%)
Query: 593 PLIVVLH---GGPHSVSLSSYSKSLA-FLSSVGYSLLIVN--YRG----SLGFGEEALQS 642
P+++V+ G + + + L L+ GY + +R +
Sbjct: 33 PIVIVVQEIFG------VHEHIRDLCRRLAQEGYLAIAPELYFRQGDPNEYHDIPTLFKE 86
Query: 643 LPGKVGSQDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA 701
L KV V D+ G + ++ + G GG +T P + AA
Sbjct: 87 LVSKVPDAQVLADLDHVASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQ--LKAAV 143
Query: 702 RNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTP 761
+ YG + SP K P+ + P
Sbjct: 144 -------------------AW---YGKLVGEKSLNSP----------KHPVDIAVDLNAP 171
Query: 762 TIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803
+ L GA+D +P +ALR +++V+P H
Sbjct: 172 VLGLYGAKDASIPQDTVETMRQALRAANATAEIVVYPEADHA 213
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} Length = 245 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 6e-07
Identities = 32/251 (12%), Positives = 86/251 (34%), Gaps = 48/251 (19%)
Query: 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGE---EALQSLPGKVG 648
++ +HG +L + + +L Y+ ++++ +G GE + ++
Sbjct: 16 PNTLLFVHGSG--CNLKIFGELEKYLE--DYNCILLDLKG---HGESKGQCPSTV----- 63
Query: 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK-----FVAAAAR- 702
+++V I + + +T++G S GG + + + ++ AR
Sbjct: 64 YGYIDNVANFITNSEVT--KHQKNITLIGYSMGGAIVLGVALKKLPNVRKVVSLSGGARF 121
Query: 703 -------------NPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK 749
N L N L+ I + + + + KD + DL
Sbjct: 122 DKLDKDFMEKIYHNQLDNNYLLECIGGIDNPLSEKYFETLEKDPDI---MINDLIACKLI 178
Query: 750 SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG--IERP 807
+ ++ + P ++ +L V + + +++ +F H +
Sbjct: 179 DLVDNLKNIDIPVKAIVAKDELLTLVEYSEIIKKEVE----NSELKIFETGKHFLLVVNA 234
Query: 808 Q---SDFESFL 815
+ + ++F+
Sbjct: 235 KGVAEEIKNFI 245
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A Length = 259 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 4e-06
Identities = 35/249 (14%), Positives = 65/249 (26%), Gaps = 61/249 (24%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVN-----YRGSLGFGEEALQSL---- 643
L+++ HGG + + L G S + ++ R S+ G E +
Sbjct: 57 RLVLLGHGGTTHKKVEYIEQVAKLLVGRGISAMAIDGPGHGERASVQAGREPTDVVGLDA 116
Query: 644 ------PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFV 697
G + + D A+D + P G S G + + +
Sbjct: 117 FPRMWHEGGGTAAVIADWAAALDFI--EAEEGPRPTGWWGLSMGTMMGLPVTASDKR--I 172
Query: 698 AAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK 757
A G G + V +
Sbjct: 173 KVAL------------------------LGLMGVEGVNGEDLVRLAPQ------------ 196
Query: 758 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNI 817
V P +LL D V + +GL+ L + + V P + + +
Sbjct: 197 VTCPVRYLLQWDDELVSLQSGLELFGKL--GTKQKTLHVNPGKHSAVPTWEMFAGTV--- 251
Query: 818 GLWFKKYCK 826
+ + K
Sbjct: 252 -DYLDQRLK 259
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} Length = 289 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 45/264 (17%), Positives = 101/264 (38%), Gaps = 70/264 (26%)
Query: 592 DPLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGE-EALQSLPGKVGS 649
D +V+LHG GP + +++S+++ L GY +++++ G +G+ +++ + +
Sbjct: 36 DETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPG---WGKSDSVVNSGSRSDL 92
Query: 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709
+ + +D + + +K+ ++G S GG + + P++ V L
Sbjct: 93 N-ARILKSVVDQ---LDI---AKIHLLGNSMGGHSSVAFTLKWPER-VGK--------LV 136
Query: 710 LM-VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR-----FHSKSPIS---------- 753
LM GT + + + + G K + P++E+L S ++
Sbjct: 137 LMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDLTDALFEARLNN 196
Query: 754 ---------------------------HISKVKTPTIFLLGAQDLRVPVSNGLQYARALR 786
++++K T+ + G D VP+ GL+ +
Sbjct: 197 MLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDRFVPMDAGLRLLSGI- 255
Query: 787 EKGVETKVIVFPNDVHG--IERPQ 808
G E + +F + H E
Sbjct: 256 -AGSE--LHIFRDCGHWAQWEHAD 276
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} Length = 270 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 7e-06
Identities = 43/265 (16%), Positives = 82/265 (30%), Gaps = 50/265 (18%)
Query: 585 HKKDCSCDPLIVVLHG------GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRG---SLG- 634
P + L G G ++ + +S+G + +Y G S G
Sbjct: 30 RAPAQDERPTCIWLGGYRSDMTGTKALEMD------DLAASLGVGAIRFDYSGHGASGGA 83
Query: 635 FGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 694
F + + S+ + + L +DH P K +VG S GG++ LI +
Sbjct: 84 FRDGTI--------SRWLEEALAVLDHF------KPEKAILVGSSMGGWIALRLIQELKA 129
Query: 695 KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH------- 747
+ + L+ D G + + E+ E+++ +
Sbjct: 130 ---RHDNPTQVSGMVLIAPAPDFTSDLIEPLLGDRERAELAENGYFEEVSEYSPEPNIFT 186
Query: 748 --------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 799
+ ++ + P L G D VP + L+ L V + + +
Sbjct: 187 RALMEDGRANRVMAGMIDTGCPVHILQGMADPDVPYQHALKLVEHLPADDV--VLTLVRD 244
Query: 800 DVHGIERPQSDFESFLNIGLWFKKY 824
H + RPQ I +
Sbjct: 245 GDHRLSRPQDIDRMRNAIRAMIEPR 269
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} Length = 391 | Back alignment and structure |
|---|
Score = 48.0 bits (113), Expect = 8e-06
Identities = 32/282 (11%), Positives = 76/282 (26%), Gaps = 38/282 (13%)
Query: 564 VSANLT--KGAQKPFEAIFV---SSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS 618
+ + + + + S K+ +P I ++ S + ++
Sbjct: 100 STFLVLKPEHLKGAVPGVLCIPGSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMV--- 156
Query: 619 SVGYSLLIVNYRG------------SLGFGEEALQSLPGKVG----SQDVNDVLTAIDHV 662
GY + V+ + + + ++G + ++ +
Sbjct: 157 KEGYVAVAVDNAAAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWM 216
Query: 663 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 722
++ + G S G ++G A + LC PD
Sbjct: 217 KAQSYIRKDRIVISGFSLGTE-PMMVLGVLDKDIYAFVYNDFLCQTQERAVVMTKPDKEN 275
Query: 723 VESYGSKGKDSFTESPSVEDLTRFHSK-SPISHISKVKTPTIFLLGAQDLRVPVSNGLQY 781
+ + + + + +P P IF G D + +Q
Sbjct: 276 RRPFPNSIRHLIPGYWRYFNFPDVVASLAP--------RPIIFTEGGLDRDFRL---VQS 324
Query: 782 ARALREKGVETKVIVFPNDVHGIERPQSDF-ESFLNIGLWFK 822
A A K + +P R + + L+ +F+
Sbjct: 325 AYAASGKPENAEFHHYPKFADKAVRKDVEHLDEGLDSKTYFE 366
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A Length = 247 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 47/250 (18%), Positives = 79/250 (31%), Gaps = 53/250 (21%)
Query: 595 IVVLHG-GPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD- 651
+++LHG +S + + L FL S GY+ Y+G G E L G D
Sbjct: 19 VLLLHGFTGNSADV----RMLGRFLESKGYTCHAPIYKGH-GVPPEELV----HTGPDDW 69
Query: 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711
DV+ + + + G K+ V G S GG + L P+ + M
Sbjct: 70 WQDVMNGYEFLKNKG---YEKIAVAGLSLGGVFSLKL-----------GYTVPIEGIVTM 115
Query: 712 VGTTDIPDW--------CYVESYGSK-GKDSFTESPSVEDLTRFHSKSPIS--------- 753
I Y Y + GK +E + K+ +
Sbjct: 116 CAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTLKALQELIADVR 175
Query: 754 -HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI----ERPQ 808
H+ + PT + D + + + + + + H I E+ Q
Sbjct: 176 DHLDLIYAPTFVVQARHDEMINPDSANIIYNEIESPVKQ--IKWYEQSGHVITLDQEKDQ 233
Query: 809 --SDFESFLN 816
D +FL
Sbjct: 234 LHEDIYAFLE 243
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} Length = 367 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 14/124 (11%)
Query: 593 PLIVVLHG--GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650
P IV+ S Y++++A G+ L + GE P V S
Sbjct: 97 PAIVIGGPFGAVKEQSSGLYAQTMA---ERGFVTLAFDPSY---TGE--SGGQPRNVASP 148
Query: 651 D--VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708
D D A+D + + N ++ V+G G + + + A DK V A + + ++
Sbjct: 149 DINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAV--AVDKRVKAVVTSTMYDM 206
Query: 709 ALMV 712
++
Sbjct: 207 TRVM 210
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A Length = 322 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 41/237 (17%), Positives = 85/237 (35%), Gaps = 59/237 (24%)
Query: 592 DPLIVVLHGGPHSV-SLSSYSKSLAFLSS-VGYSLLIVNYRGSLG----FGEEALQSLPG 645
I+ LHGG + + S++++ + +S + L+++YR L F A+
Sbjct: 80 GKAILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYR--LAPEHPFPA-AV----- 131
Query: 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAA 701
D + A ++D G P +++ G S GG L ++ A D+ +A
Sbjct: 132 -------EDGVAAYRWLLDQGFK-PQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIP 183
Query: 702 RNPLCNLAL-------------MVGTTDIPDWCYVESY-GSKGKDSFTESPSVEDLTRFH 747
+P ++ MV I + Y SP+ +L
Sbjct: 184 ISPWADMTCTNDSFKTRAEADPMVAPGGI-NK-MAARYLNGADAKHPYASPNFANLKGL- 240
Query: 748 SKSPISHISKVKTPTIFLLGAQD-LRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803
P P + +G + L + ++ + GV++ + ++ + +H
Sbjct: 241 ---P---------PLLIHVGRDEVLL---DDSIKLDAKAKADGVKSTLEIWDDMIHV 282
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} Length = 306 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 3e-05
Identities = 19/115 (16%), Positives = 42/115 (36%), Gaps = 15/115 (13%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
I + G ++ + SS + ++S G+ ++ ++ +L + ++ +
Sbjct: 97 GAIAISPG--YTGTQSSIAWLGERIASHGFVVIAIDTNTTLDQPDSR---------ARQL 145
Query: 653 N---DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 704
N D + + S++ V+G S GG T + AA P
Sbjct: 146 NAALDYMLTDASSAVRNRIDASRLAVMGHSMGGG-GTLRLASQRPDLKAAIPLTP 199
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A Length = 322 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 7e-05
Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 61/238 (25%)
Query: 592 DPLIVVLHGGPHSV-SLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSL------ 643
I+ HGG + S S++ L+ +L ++YR L
Sbjct: 80 AAHILYFHGGGYISGSPSTHLVLTTQLAKQSSATLWSLDYR------------LAPENPF 127
Query: 644 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAA 699
P V +D + A ++ + ++ + G S GG LTT + +A +
Sbjct: 128 PAAV-----DDCVAAYRALLKTAGS-ADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGL 181
Query: 700 AARNPLCNLAL------------MVGTTDIPDWCYVESY-GSKGKDSFTESPSVEDLTRF 746
+P +L L + D E Y G + + + SP DL+
Sbjct: 182 VMLSPFVDLTLSRWSNSNLADRDFLAEPDTLGEM-SELYVGGEDRKNPLISPVYADLSGL 240
Query: 747 HSKSPISHISKVKTPTIFLLGAQD-LRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803
P + +G+++ L S+ A GV ++ ++P+ H
Sbjct: 241 ----P---------EMLIHVGSEEALL---SDSTTLAERAGAAGVSVELKIWPDMPHV 282
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 36/284 (12%), Positives = 78/284 (27%), Gaps = 73/284 (25%)
Query: 107 NGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGS 166
G + +++ NL NK + +T++ + +N+ + A+ SP G
Sbjct: 23 KGELVAYVLTKANLKDNKYE----NTIVIENLKNNARRF-------IENATMPRISPDGK 71
Query: 167 KLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 226
K+ +R E + + +W ++ + WN D + V
Sbjct: 72 KIAFMRANEEKKVSE--IWVADLETLS-SKKILEAKNI------RSLEWNEDSRKLLIVG 122
Query: 227 EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ 286
+ D+D W + + + ++ + S EV
Sbjct: 123 FKRRE---------------DEDFIFEDDVPAW--FDDLGFFDGEKTTFWIFDTESEEVI 165
Query: 287 AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 346
+ +W K+ + + Y +Y
Sbjct: 166 E---EFEKPRFSSGIWHR------------------DKIVVNVPHREIIPQYFKFWDIYI 204
Query: 347 SEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 390
E + E + E +S F DG+ ++
Sbjct: 205 WEDGKEE------------KMFEKVS---FYAVDSDGERILLYG 233
|
| >2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A Length = 291 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 46/256 (17%), Positives = 88/256 (34%), Gaps = 73/256 (28%)
Query: 592 DPLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650
D +V+LHG GP + S +++S+++A L+ + +L V+ G+G S Q
Sbjct: 36 DQTVVLLHGGGPGAASWTNFSRNIAVLAR-HFHVLAVDQ---PGYG----HSDKRAEHGQ 87
Query: 651 DVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709
A+ + D +GL +V +VG + GG P + L
Sbjct: 88 FNRYAAMALKGLFDQLGL---GRVPLVGNALGGGTAVRFALDYPAR-AGR--------LV 135
Query: 710 LM--VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR-----FHSKSPIS--------- 753
LM G + + G K F+ +P+ E+L + K+ I+
Sbjct: 136 LMGPGGLSINLFA-PDPTEGVKRLSKFSVAPTRENLEAFLRVMVYDKNLITPELVDQRFA 194
Query: 754 ------------------------------HISKVKTPTIFLLGAQDLRVPVSNGLQYAR 783
+ +++ P + + G +D P+ L +
Sbjct: 195 LASTPESLTATRAMGKSFAGADFEAGMMWREVYRLRQPVLLIWGREDRVNPLDGALVALK 254
Query: 784 ALREKGVETKVIVFPN 799
+ + + VF
Sbjct: 255 TI--PRAQ--LHVFGQ 266
|
| >1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A* Length = 273 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 10/114 (8%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
V++HG H S+ K L + G+ + ++ S G + + +
Sbjct: 5 KHFVLVHGACHGGW--SWYKLKPLLEAAGHKVTALDLAAS---GTDLRKIEELRTLYDYT 59
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706
++ ++ L+ KV +VG S GG + + P K AA
Sbjct: 60 LPLMELMES-----LSADEKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFM 108
|
| >2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A Length = 286 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 45/273 (16%), Positives = 83/273 (30%), Gaps = 73/273 (26%)
Query: 593 PLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
+++LHG GP + S+Y +++ GY +++ + G F + + + G +
Sbjct: 34 ETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPG---FNKSDAVVMDEQRGLVN 90
Query: 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711
V +D + + + +VG + GG + + PD+ + L LM
Sbjct: 91 ARAVKGLMDA---LDI---DRAHLVGNAMGGATALNFALEYPDR-IGK--------LILM 135
Query: 712 --VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR-----FHSKSPIS----------- 753
G G K PS E L + + +S I+
Sbjct: 136 GPGGLGPSMFAPMPME-GIKLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWEAI 194
Query: 754 --------------------------HISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE 787
+ ++K T G D VP+ +GL+ +
Sbjct: 195 QRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNI-- 252
Query: 788 KGVETKVIVFPNDVHG--IERPQ---SDFESFL 815
+ VF E FL
Sbjct: 253 DDAR--LHVFSKCGAWAQWEHADEFNRLVIDFL 283
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} Length = 377 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-04
Identities = 24/147 (16%), Positives = 45/147 (30%), Gaps = 13/147 (8%)
Query: 593 PLIVVLHG-------GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 645
+I HG P + +Y A+ +S GY ++ +Y G +
Sbjct: 75 GIISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYMTVMPDYLGLGDNELTLHPYVQA 134
Query: 646 KVGSQDVNDVLTAIDHVI-DMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAA 699
+ + D+L A + + K+ + G S GGF T + A
Sbjct: 135 ETLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKEYPDLPVSAV 194
Query: 700 AARNPLCNLALMVGTTDIPDWCYVESY 726
A + + + +Y
Sbjct: 195 APGSAPYGWEETMHFVMLEPGPRATAY 221
|
| >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} Length = 176 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 3e-04
Identities = 23/195 (11%), Positives = 52/195 (26%), Gaps = 54/195 (27%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
++ HG S + +LA +G++ ++ G
Sbjct: 5 GHCILAHGF-ESGPDALKVTALAEVAERLGWTHERPDFT---DLDARRDLGQLGD-VRGR 59
Query: 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711
+ +L + V + G S G ++ + + + P L LM
Sbjct: 60 LQRLLEIARAATE-----KGPVVLAGSSLGSYIAAQV-----------SLQVPTRALFLM 103
Query: 712 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 771
V T + +++ P + D
Sbjct: 104 VPPTKMGPLPALDAAA--------------------------------VPISIVHAWHDE 131
Query: 772 RVPVSNGLQYARALR 786
+P ++ + +A+A
Sbjct: 132 LIPAADVIAWAQARS 146
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} Length = 751 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 22/144 (15%)
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP-------L 705
+D + A + +++ L PS++ G S GG L ++ PD F A A P +
Sbjct: 571 SDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALAGVPFVDVMTTM 630
Query: 706 CNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFL 765
C+ ++ + T + +W G+ + S SP+ ++ + P I +
Sbjct: 631 CDPSIPLTTGEWEEW------GN--------PNEYKYYDYMLSYSPMDNVRAQEYPNIMV 676
Query: 766 LGA-QDLRVPVSNGLQYARALREK 788
D RV ++ LRE
Sbjct: 677 QCGLHDPRVAYWEPAKWVSKLREC 700
|
| >2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A* Length = 264 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 15/114 (13%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
V++HGG + K L S G+ + V+ + G +
Sbjct: 11 KHFVLVHGGCLG--AWIWYKLKPLLESAGHKVTAVDLSAA---GINPRRLDEIHTFRDYS 65
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK-----FVAAAA 701
++ + + KV ++G S GG + P+K F++A
Sbjct: 66 EPLMEVMASIPPDE-----KVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMM 114
|
| >1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A Length = 282 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 44/261 (16%), Positives = 87/261 (33%), Gaps = 52/261 (19%)
Query: 593 PLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGE-EALQSLPGKVGSQ 650
++++HG GP + +++ ++ LS Y ++ + G FG + ++ S
Sbjct: 26 QPVILIHGSGPGVSAYANWRLTIPALSK-FYRVIAPDMVG---FGFTDRPENYNYSKDSW 81
Query: 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKF-----VAAAARNPL 705
V+ ++ +D + + K +VG + GG L + ++ + AA
Sbjct: 82 -VDHIIGIMDA---LEI---EKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFD 134
Query: 706 CNLALMVGTTDIPDW-----------------------CYVESYGSKG-KDSFTE-SPSV 740
L P E+ G ++SF+ P
Sbjct: 135 VTEGLNAVWGYTPSIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEP 194
Query: 741 EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 800
S I + T+ + G +D VP+S+ L+ + + + VF
Sbjct: 195 RQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSSLRLGELI--DRAQ--LHVFGRC 250
Query: 801 VHG--IERPQ---SDFESFLN 816
H IE+ F N
Sbjct: 251 GHWTQIEQTDRFNRLVVEFFN 271
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Length = 1045 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 6e-04
Identities = 37/364 (10%), Positives = 92/364 (25%), Gaps = 64/364 (17%)
Query: 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGI 213
+ + G + V + + + Q V + +
Sbjct: 297 SKFAEDFSPLDGDLIAFV--------SRGQAFIQDVSGTY--VLKVPEPLRIRY-----V 341
Query: 214 SWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQP 273
D + + + K +++ + + +
Sbjct: 342 RRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEEN-LGNVFAMGVDRNGKFAVVANDRF 400
Query: 274 SLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNR 333
+ +++ +G+ + + + + + +++ + G
Sbjct: 401 EIMTVDLETGKPTVI-ERSREAMITDFTISDNS----RFIAYGFPLKHGETDGYVM---- 451
Query: 334 PCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393
+ +Y E + + T S + P F D K L +LS +S
Sbjct: 452 ------QAIHVYDMEGRK------------IFAATTENSHDYAPAFDADSKNLYYLSYRS 493
Query: 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 453
+ +++ S E + + L S+ S
Sbjct: 494 ------LDPSPDRVVLNF-------SFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY 540
Query: 454 DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVP 513
D + +NV G+ I P ES+ + + G+ +P
Sbjct: 541 DL--------NDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGV 592
Query: 514 QVKY 517
+KY
Sbjct: 593 LLKY 596
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Length = 710 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 6e-04
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 18/135 (13%)
Query: 581 VSSSHKKDCSCD---PLIVVLHG-GPHSVSLS-SYSKS-LAFLSSVGYSLLIVNYRGSLG 634
+ HKK D P L+G G ++S++ +YS S L F+ +G L + N RG
Sbjct: 452 MFIVHKKGIKLDGSHPAF--LYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGE 509
Query: 635 FGE---EALQSLPGKVGS-QDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
+GE + G + + Q+ +D A +++I G +P ++T+ GGS+GG L
Sbjct: 510 YGETWHKG-----GILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCA 564
Query: 690 GQAPDKFVAAAARNP 704
Q PD F A+
Sbjct: 565 NQRPDLFGCVIAQVG 579
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} Length = 262 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 28/241 (11%), Positives = 62/241 (25%), Gaps = 62/241 (25%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD- 651
P +V++ G + + + L+ ++++ + RG G S + +
Sbjct: 24 PPVVLVGGAL--STRAGGAPLAERLAP-HFTVICYDRRG---RG----DSGDTPPYAVER 73
Query: 652 -VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710
+ D+ ID G V G S G L+ + A +
Sbjct: 74 EIEDLAAIIDAA---GG----AAFVFGMSSGAGLSLLAAASGLP--ITRLA---VFEPPY 121
Query: 711 MVGTTDIP----------------------DWCYVESYGS--------------KGKDSF 734
V + P + E G G ++
Sbjct: 122 AVDDSRPPVPPDYQTRLDALLAEGRRGDAVTYFMTEGVGVPPDLVAQMQQAPMWPGMEAV 181
Query: 735 TESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 794
+ + + P + + + PT+ + G + A +
Sbjct: 182 AHTLPYDHAVMGDNTIPTARFASISIPTLVMDGGASPAWIRHTAQELADTI--PNARYVT 239
Query: 795 I 795
+
Sbjct: 240 L 240
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 Length = 210 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 7e-04
Identities = 21/139 (15%), Positives = 42/139 (30%), Gaps = 10/139 (7%)
Query: 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
+++LHG S +L L+ GY + ++ G G +E
Sbjct: 32 RFSVLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGL-GHSKE-----AAAPAPIG 85
Query: 652 VNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710
+ + V+D + L V+ S G + + + P+C +
Sbjct: 86 ELAPGSFLAAVVDALEL---GPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDKI 142
Query: 711 MVGTTDIPDWCYVESYGSK 729
+ YG +
Sbjct: 143 NAANYASVKTPALIVYGDQ 161
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} Length = 398 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 8e-04
Identities = 34/282 (12%), Positives = 80/282 (28%), Gaps = 36/282 (12%)
Query: 564 VSANLT--KGAQKPFEAIFV---SSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS 618
+ + KP AI S +K+ + +P I + + + +
Sbjct: 105 STFLVLIPDNINKPVPAILCIPGSGGNKEGLAGEPGIAPKLNDRYKDPKLTQALNFV--- 161
Query: 619 SVGYSLLIVNYRG------------SLGFGEEALQSLPGKVG----SQDVNDVLTAIDHV 662
GY + V+ + + + ++G + ++ +
Sbjct: 162 KEGYIAVAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWM 221
Query: 663 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 722
++ V G S G ++G A + LC +PD
Sbjct: 222 KTQKHIRKDRIVVSGFSLGTEPMM-VLGTLDTSIYAFVYNDFLCQTQERAEVMTMPDKNG 280
Query: 723 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 782
+ + + + D + + I + P I G D + + ++ A
Sbjct: 281 RRPFPN------SIRHLIPDFWKNFNFPDIVAALAPR-PIILTEGGLDRDLDL---VRKA 330
Query: 783 RALREKGVETKVIVFPNDVHGIERPQSDF-ESFLNIGLWFKK 823
A+ K+ + R ++ L+ +F+
Sbjct: 331 YAIVGTPDNVKIYHYKKFSDPDTRKNVEYLPEGLDRNEYFRM 372
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 826 | |||
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 100.0 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 100.0 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 100.0 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 100.0 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 100.0 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 100.0 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 100.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 100.0 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 100.0 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 100.0 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 100.0 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 100.0 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 99.92 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.91 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 99.91 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.91 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 99.9 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 99.9 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 99.9 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 99.89 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 99.89 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 99.89 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 99.89 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 99.88 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 99.88 | |
| 3ebl_A | 365 | Gibberellin receptor GID1; alpha/beta hydrolase, l | 99.88 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 99.88 | |
| 2i3d_A | 249 | AGR_C_3351P, hypothetical protein ATU1826; structu | 99.88 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 99.88 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 99.88 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.88 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.88 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.87 | |
| 3ga7_A | 326 | Acetyl esterase; phosphoserine, IDP00896, hydrolas | 99.87 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 99.87 | |
| 4fbl_A | 281 | LIPS lipolytic enzyme; thermostable, structural ge | 99.87 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 99.87 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 99.87 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 99.87 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.86 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 99.86 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 99.86 | |
| 2zsh_A | 351 | Probable gibberellin receptor GID1L1; plant hormon | 99.86 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 99.86 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.85 | |
| 3hju_A | 342 | Monoglyceride lipase; alpha/beta hydrolase, hydrol | 99.85 | |
| 3pe6_A | 303 | Monoglyceride lipase; alpha-beta hydrolase fold, 2 | 99.85 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 99.85 | |
| 2b9v_A | 652 | Alpha-amino acid ester hydrolase; catalytic triad, | 99.85 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 99.85 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 99.85 | |
| 3i6y_A | 280 | Esterase APC40077; lipase, structural genomics, PS | 99.85 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 99.85 | |
| 2hm7_A | 310 | Carboxylesterase; alpha/beta hydrolase fold, hydro | 99.85 | |
| 2fuk_A | 220 | XC6422 protein; A/B hydrolase, structural genomics | 99.85 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 99.84 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.84 | |
| 1lzl_A | 323 | Heroin esterase; alpha/beta hydrolase; 1.30A {Rhod | 99.84 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 99.84 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 99.84 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 99.84 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.84 | |
| 2wir_A | 313 | Pesta, alpha/beta hydrolase fold-3 domain protein; | 99.84 | |
| 3ain_A | 323 | 303AA long hypothetical esterase; carboxylesterase | 99.84 | |
| 3ls2_A | 280 | S-formylglutathione hydrolase; psychrophilic organ | 99.84 | |
| 2o7r_A | 338 | CXE carboxylesterase; alpha/beta hydrolase; 1.40A | 99.84 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 99.84 | |
| 3qh4_A | 317 | Esterase LIPW; structural genomics, ssgcid, seattl | 99.84 | |
| 3e4d_A | 278 | Esterase D; S-formylglutathione hydrolase, hydrola | 99.83 | |
| 4h0c_A | 210 | Phospholipase/carboxylesterase; PSI-biology, midwe | 99.83 | |
| 2c7b_A | 311 | Carboxylesterase, ESTE1; carboxyesterase, thermoph | 99.83 | |
| 1jkm_A | 361 | Brefeldin A esterase; serine hydrolase, degradatio | 99.83 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 99.83 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 99.83 | |
| 1fj2_A | 232 | Protein (acyl protein thioesterase 1); alpha/beta | 99.83 | |
| 1lns_A | 763 | X-prolyl dipeptidyl aminopetidase; alpha beta hydr | 99.82 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 99.82 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.82 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 99.82 | |
| 3bdi_A | 207 | Uncharacterized protein TA0194; NP_393672.1, predi | 99.82 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.81 | |
| 1auo_A | 218 | Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl | 99.81 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 99.81 | |
| 3cn9_A | 226 | Carboxylesterase; alpha/beta hydrolase fold super- | 99.81 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 99.81 | |
| 3d7r_A | 326 | Esterase; alpha/beta fold, hydrolase; 2.01A {Staph | 99.81 | |
| 2uz0_A | 263 | Esterase, tributyrin esterase; alpha/beta hydrolas | 99.8 | |
| 4b6g_A | 283 | Putative esterase; hydrolase, formaldehyde detoxif | 99.8 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.8 | |
| 4fhz_A | 285 | Phospholipase/carboxylesterase; alpha/beta hydrola | 99.8 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 99.8 | |
| 3b5e_A | 223 | MLL8374 protein; NP_108484.1, carboxylesterase, st | 99.8 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 99.79 | |
| 3u0v_A | 239 | Lysophospholipase-like protein 1; alpha, beta hydr | 99.79 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 99.79 | |
| 1k8q_A | 377 | Triacylglycerol lipase, gastric; APHA beta hydrola | 99.79 | |
| 1jji_A | 311 | Carboxylesterase; alpha-beta hydrolase fold, hydro | 99.79 | |
| 3d0k_A | 304 | Putative poly(3-hydroxybutyrate) depolymerase LPQ; | 99.79 | |
| 2r8b_A | 251 | AGR_C_4453P, uncharacterized protein ATU2452; APC6 | 99.79 | |
| 2qjw_A | 176 | Uncharacterized protein XCC1541; putative hydrolas | 99.79 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.78 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 99.78 | |
| 2y6u_A | 398 | Peroxisomal membrane protein LPX1; hydrolase, puta | 99.78 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 99.78 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 99.77 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 99.77 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 99.77 | |
| 3ia2_A | 271 | Arylesterase; alpha-beta hydrolase fold, transitio | 99.77 | |
| 1qlw_A | 328 | Esterase; anisotropic refinement, atomic resolutio | 99.77 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.76 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 99.76 | |
| 2pl5_A | 366 | Homoserine O-acetyltransferase; alpha/beta hydrola | 99.76 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.75 | |
| 3kxp_A | 314 | Alpha-(N-acetylaminomethylene)succinic acid hydrol | 99.75 | |
| 3v48_A | 268 | Aminohydrolase, putative aminoacrylate hydrolase R | 99.75 | |
| 3fob_A | 281 | Bromoperoxidase; structural genomics, IDP00046, ba | 99.75 | |
| 1brt_A | 277 | Bromoperoxidase A2; haloperoxidase, oxidoreductase | 99.75 | |
| 1a88_A | 275 | Chloroperoxidase L; haloperoxidase, oxidoreductase | 99.75 | |
| 3sty_A | 267 | Methylketone synthase 1; alpha/beta hydrolase, dec | 99.75 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 99.75 | |
| 1a8s_A | 273 | Chloroperoxidase F; haloperoxidase, oxidoreductase | 99.75 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.75 | |
| 4fle_A | 202 | Esterase; structural genomics, PSI-biology, northe | 99.75 | |
| 1zoi_A | 276 | Esterase; alpha/beta hydrolase fold; 1.60A {Pseudo | 99.75 | |
| 1a8q_A | 274 | Bromoperoxidase A1; haloperoxidase, oxidoreductase | 99.75 | |
| 1sfr_A | 304 | Antigen 85-A; alpha/beta hydrolase, structural gen | 99.75 | |
| 3dqz_A | 258 | Alpha-hydroxynitrIle lyase-like protein; A/B-hydrl | 99.74 | |
| 1q0r_A | 298 | RDMC, aclacinomycin methylesterase; anthracycline, | 99.74 | |
| 3iii_A | 560 | COCE/NOND family hydrolase; structural genomics, c | 99.74 | |
| 2yys_A | 286 | Proline iminopeptidase-related protein; TTHA1809, | 99.74 | |
| 3vdx_A | 456 | Designed 16NM tetrahedral protein CAGE containing | 99.74 | |
| 3i2k_A | 587 | Cocaine esterase; alpha/beta hydrolase, hydrolase; | 99.74 | |
| 3u1t_A | 309 | DMMA haloalkane dehalogenase; alpha/beta-hydrolase | 99.74 | |
| 3om8_A | 266 | Probable hydrolase; structural genomics, PSI-2, pr | 99.74 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.74 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 99.73 | |
| 4f21_A | 246 | Carboxylesterase/phospholipase family protein; str | 99.73 | |
| 3nwo_A | 330 | PIP, proline iminopeptidase; structural genomics, | 99.73 | |
| 2puj_A | 286 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; | 99.73 | |
| 3qvm_A | 282 | OLEI00960; structural genomics, PSI-biology, midwe | 99.73 | |
| 4dnp_A | 269 | DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petu | 99.73 | |
| 3qit_A | 286 | CURM TE, polyketide synthase; thioesterase, alpha/ | 99.73 | |
| 2r11_A | 306 | Carboxylesterase NP; 2632844, putative hydrolase, | 99.73 | |
| 2xua_A | 266 | PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, cate | 99.73 | |
| 1mtz_A | 293 | Proline iminopeptidase; alpha-beta hydrolase, CAP | 99.73 | |
| 1r88_A | 280 | MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBP | 99.73 | |
| 1iup_A | 282 | META-cleavage product hydrolase; aromatic compound | 99.73 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.73 | |
| 3fsg_A | 272 | Alpha/beta superfamily hydrolase; PF00561, MCSG, P | 99.72 | |
| 1c4x_A | 285 | BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-di | 99.72 | |
| 3oos_A | 278 | Alpha/beta hydrolase family protein; APC67239.0, p | 99.72 | |
| 3i1i_A | 377 | Homoserine O-acetyltransferase; structural genomic | 99.72 | |
| 3d59_A | 383 | Platelet-activating factor acetylhydrolase; secret | 99.72 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 99.72 | |
| 2wue_A | 291 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas | 99.71 | |
| 1hkh_A | 279 | Gamma lactamase; hydrolase, alpha/beta hydrolase, | 99.71 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 99.71 | |
| 2qs9_A | 194 | Retinoblastoma-binding protein 9; B5T overexpresse | 99.71 | |
| 3hss_A | 293 | Putative bromoperoxidase; alpha beta hydrolase, ox | 99.71 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 99.71 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 99.71 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 99.7 | |
| 3bf7_A | 255 | Esterase YBFF; thioesterase, helical CAP, hydrolas | 99.7 | |
| 3r40_A | 306 | Fluoroacetate dehalogenase; FACD, defluorinase, al | 99.7 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 99.7 | |
| 1j1i_A | 296 | META cleavage compound hydrolase; carbazole degrad | 99.7 | |
| 2b61_A | 377 | Homoserine O-acetyltransferase; acyl-enzyme, aspar | 99.69 | |
| 2wfl_A | 264 | Polyneuridine-aldehyde esterase; alkaloid metaboli | 99.69 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 99.69 | |
| 2xt0_A | 297 | Haloalkane dehalogenase; hydrolase, alpha-beta hyd | 99.69 | |
| 3p2m_A | 330 | Possible hydrolase; alpha/beta hydrolase superfami | 99.69 | |
| 1b6g_A | 310 | Haloalkane dehalogenase; hydrolase, alpha/beta-hyd | 99.69 | |
| 3g9x_A | 299 | Haloalkane dehalogenase; alpha/beta hydrolase, hel | 99.69 | |
| 4g9e_A | 279 | AHL-lactonase, alpha/beta hydrolase fold protein; | 99.68 | |
| 1uxo_A | 192 | YDEN protein; hydrolase, A/B hydrolase, esterase, | 99.68 | |
| 3i28_A | 555 | Epoxide hydrolase 2; aromatic hydrocarbons catabol | 99.68 | |
| 3afi_E | 316 | Haloalkane dehalogenase; A/B-hydrolase, hydrolase; | 99.68 | |
| 2e3j_A | 356 | Epoxide hydrolase EPHB; epoxide hydrolase B, struc | 99.68 | |
| 3bwx_A | 285 | Alpha/beta hydrolase; YP_496220.1, joint center fo | 99.68 | |
| 2xmz_A | 269 | Hydrolase, alpha/beta hydrolase fold family; menaq | 99.68 | |
| 1xkl_A | 273 | SABP2, salicylic acid-binding protein 2; alpha-bet | 99.68 | |
| 1dqz_A | 280 | 85C, protein (antigen 85-C); fibronectin, structur | 99.67 | |
| 2vat_A | 444 | Acetyl-COA--deacetylcephalosporin C acetyltransfer | 99.67 | |
| 3guu_A | 462 | Lipase A; protein structure, hydrolase; HET: 1PE; | 99.67 | |
| 2cjp_A | 328 | Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tu | 99.67 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.66 | |
| 1wm1_A | 317 | Proline iminopeptidase; complex with inhibitor, hy | 99.66 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.66 | |
| 3c6x_A | 257 | Hydroxynitrilase; atomic resolution, hydroxynitril | 99.66 | |
| 2rau_A | 354 | Putative esterase; NP_343859.1, putative lipase, s | 99.66 | |
| 1wom_A | 271 | RSBQ, sigma factor SIGB regulation protein RSBQ; a | 99.66 | |
| 3kda_A | 301 | CFTR inhibitory factor (CIF); alpha/beta hydrolase | 99.66 | |
| 1ehy_A | 294 | Protein (soluble epoxide hydrolase); alpha/beta hy | 99.65 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.65 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.65 | |
| 2qvb_A | 297 | Haloalkane dehalogenase 3; RV2579, alpha-beta hydr | 99.65 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.65 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.65 | |
| 3fla_A | 267 | RIFR; alpha-beta hydrolase thioesterase, hydrolase | 99.65 | |
| 3bdv_A | 191 | Uncharacterized protein DUF1234; DUF1234 family pr | 99.64 | |
| 1isp_A | 181 | Lipase; alpha/beta hydrolase fold, hydrolase; 1.30 | 99.64 | |
| 1mj5_A | 302 | 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; | 99.63 | |
| 1azw_A | 313 | Proline iminopeptidase; aminopeptidase, serine pro | 99.63 | |
| 3ibt_A | 264 | 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, | 99.63 | |
| 2qmq_A | 286 | Protein NDRG2, protein NDR2; alpha/beta-hydrolases | 99.62 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.62 | |
| 1ycd_A | 243 | Hypothetical 27.3 kDa protein in AAP1-SMF2 interge | 99.62 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 99.62 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.61 | |
| 1m33_A | 258 | BIOH protein; alpha-betta-alpha sandwich, structur | 99.61 | |
| 2q0x_A | 335 | Protein DUF1749, uncharacterized protein; alpha/be | 99.61 | |
| 1r3d_A | 264 | Conserved hypothetical protein VC1974; structural | 99.61 | |
| 1pja_A | 302 | Palmitoyl-protein thioesterase 2 precursor; hydrol | 99.61 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 99.6 | |
| 2psd_A | 318 | Renilla-luciferin 2-monooxygenase; alpha/beta-hydr | 99.6 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.6 | |
| 3l80_A | 292 | Putative uncharacterized protein SMU.1393C; alpha/ | 99.6 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.59 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.58 | |
| 3b12_A | 304 | Fluoroacetate dehalogenase; dehalogease, hydrolase | 99.35 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.57 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.56 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.55 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.55 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.53 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.53 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.53 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.53 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 99.52 | |
| 2wj6_A | 276 | 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid | 99.52 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.52 | |
| 1qe3_A | 489 | PNB esterase, para-nitrobenzyl esterase; alpha-bet | 99.52 | |
| 3qmv_A | 280 | Thioesterase, REDJ; alpha/beta hydrolase fold, hyd | 99.52 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.51 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.51 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.5 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.5 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.5 | |
| 4i19_A | 388 | Epoxide hydrolase; structural genomics, PSI-biolog | 99.5 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.49 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.49 | |
| 3qyj_A | 291 | ALR0039 protein; alpha/beta fold, hydrolase; 1.78A | 99.49 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.49 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.48 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.48 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.48 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.48 | |
| 3c5v_A | 316 | PME-1, protein phosphatase methylesterase 1; demet | 99.46 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.46 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.46 | |
| 3gff_A | 331 | IROE-like serine hydrolase; NP_718593.1, structura | 99.46 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.46 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.46 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.45 | |
| 3pic_A | 375 | CIP2; alpha/beta hydrolase fold, glucuronoyl ester | 99.44 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.44 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.42 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.41 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.4 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.4 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.4 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.4 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.4 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.4 | |
| 3fle_A | 249 | SE_1780 protein; structural genomics, APC61035.1, | 99.39 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.38 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.38 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.38 | |
| 4g4g_A | 433 | 4-O-methyl-glucuronoyl methylesterase; alpha/beta | 99.38 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.38 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.37 | |
| 3lcr_A | 319 | Tautomycetin biosynthetic PKS; alpha-beta hydrolas | 99.36 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 99.36 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.35 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.35 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.35 | |
| 4fol_A | 299 | FGH, S-formylglutathione hydrolase; D-type esteras | 99.35 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.35 | |
| 3ds8_A | 254 | LIN2722 protein; unkonwn function, structural geno | 99.34 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.34 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.34 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.33 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.33 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.33 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.33 | |
| 3g02_A | 408 | Epoxide hydrolase; alpha/beta hydrolase fold, enan | 99.32 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.32 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.32 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.31 | |
| 1kez_A | 300 | Erythronolide synthase; polyketide synthase, modul | 99.31 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.31 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.31 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.31 | |
| 3lp5_A | 250 | Putative cell surface hydrolase; structural genom | 99.31 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.3 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.3 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.29 | |
| 1ukc_A | 522 | ESTA, esterase; fungi, A/B hydrolase fold, acetylc | 99.29 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.29 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.29 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.29 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.29 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.28 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.28 | |
| 2k2q_B | 242 | Surfactin synthetase thioesterase subunit; A/B-hyd | 99.27 | |
| 3ils_A | 265 | PKS, aflatoxin biosynthesis polyketide synthase; A | 99.26 | |
| 1tca_A | 317 | Lipase; hydrolase(carboxylic esterase); HET: NAG; | 99.26 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.26 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.26 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.26 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.25 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.25 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.24 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.24 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.24 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.23 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.23 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.23 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.23 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.2 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.2 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.2 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.19 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.19 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.19 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.18 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.18 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.17 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.15 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.15 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.14 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.14 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.11 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.11 | |
| 2h7c_A | 542 | Liver carboxylesterase 1; enzyme, cholesteryl este | 99.11 | |
| 1thg_A | 544 | Lipase; hydrolase(carboxylic esterase); HET: NAG N | 99.11 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.11 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.11 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.11 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.11 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.11 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.1 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.1 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.09 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.08 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.08 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.07 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.07 | |
| 1ei9_A | 279 | Palmitoyl protein thioesterase 1; alpha/beta hydro | 99.07 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.06 | |
| 1llf_A | 534 | Lipase 3; candida cylindracea cholesterol esterase | 99.06 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.06 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.04 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.03 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.03 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.03 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.03 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.03 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.02 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.02 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.02 | |
| 2ogt_A | 498 | Thermostable carboxylesterase EST50; alpha/beta hy | 99.02 | |
| 2ha2_A | 543 | ACHE, acetylcholinesterase; hydrolase fold, serine | 99.02 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.01 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.01 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.0 | |
| 1gpl_A | 432 | RP2 lipase; serine esterase, hydrolase, lipid degr | 98.99 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 98.98 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 98.98 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 98.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 98.97 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.96 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.95 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.94 | |
| 1p0i_A | 529 | Cholinesterase; serine hydrolase, butyrate, hydrol | 98.94 | |
| 2fj0_A | 551 | JuvenIle hormone esterase; manduca sexta, alpha-be | 98.93 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 98.93 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.93 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.93 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.92 | |
| 1jmk_C | 230 | SRFTE, surfactin synthetase; thioesterase, non-rib | 98.91 | |
| 1ea5_A | 537 | ACHE, acetylcholinesterase; hydrolase, serine hydr | 98.91 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.91 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 98.91 | |
| 3icv_A | 316 | Lipase B, CALB; circular permutation, cleavage on | 98.9 | |
| 2cb9_A | 244 | Fengycin synthetase; thioesterase, non-ribosomal p | 98.9 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.89 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 98.89 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 98.88 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 98.88 | |
| 1dx4_A | 585 | ACHE, acetylcholinesterase; hydrolase, serine este | 98.88 | |
| 1ex9_A | 285 | Lactonizing lipase; alpha-beta hydrolase fold, pho | 98.87 | |
| 2bce_A | 579 | Cholesterol esterase; hydrolase, serine esterase, | 98.85 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.85 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 98.84 | |
| 1ys1_X | 320 | Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor h | 98.83 | |
| 3bix_A | 574 | Neuroligin-1, neuroligin I; esterase domain, alpha | 98.82 | |
| 1bu8_A | 452 | Protein (pancreatic lipase related protein 2); hyd | 98.82 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.82 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.8 | |
| 2x5x_A | 342 | PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE | 98.8 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.79 | |
| 1w52_X | 452 | Pancreatic lipase related protein 2; detergent, cl | 98.79 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 98.78 | |
| 2hfk_A | 319 | Pikromycin, type I polyketide synthase pikaiv; alp | 98.76 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 98.76 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.75 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.75 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.74 | |
| 3n2z_B | 446 | Lysosomal Pro-X carboxypeptidase; alpha/beta hydro | 98.71 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.69 | |
| 2zyr_A | 484 | Lipase, putative; fatty acid, hydrolase; HET: 1PE; | 98.67 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.67 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.67 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.65 | |
| 1hpl_A | 449 | Lipase; hydrolase(carboxylic esterase); 2.30A {Equ | 98.63 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.62 | |
| 1rp1_A | 450 | Pancreatic lipase related protein 1; hydrolase, li | 98.6 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.6 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.59 | |
| 3tjm_A | 283 | Fatty acid synthase; thioesterase domain, fatty ac | 98.59 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.59 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.59 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.56 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.55 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.53 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.53 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.52 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 98.5 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.5 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.44 | |
| 2dst_A | 131 | Hypothetical protein TTHA1544; conserved hypotheti | 98.44 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 98.41 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.4 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.37 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.37 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.33 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.31 | |
| 2hih_A | 431 | Lipase 46 kDa form; A1 phospholipase, phospholipid | 98.29 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.23 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.22 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.21 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.19 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.19 | |
| 2dsn_A | 387 | Thermostable lipase; T1 lipase, hydrolase; 1.50A { | 98.19 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.14 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.14 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.13 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.12 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.07 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.06 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.05 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.03 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.03 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.02 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.02 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.01 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.01 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 97.93 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 97.87 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.86 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.86 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 97.85 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.84 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.8 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.79 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.78 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.76 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.75 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.74 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.69 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.69 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.69 | |
| 1whs_A | 255 | Serine carboxypeptidase II; HET: NAG FUC; 2.00A {T | 97.68 | |
| 4ebb_A | 472 | Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2 | 97.65 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 97.62 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.61 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.59 | |
| 1ivy_A | 452 | Human protective protein; carboxypeptidase, serine | 97.58 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.55 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.5 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.48 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 97.43 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 97.42 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.42 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 97.42 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.36 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.26 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.24 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.23 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.21 | |
| 2px6_A | 316 | Thioesterase domain; thioesaterse domain, orlistat | 97.13 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.01 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 96.98 | |
| 4az3_A | 300 | Lysosomal protective protein 32 kDa chain; hydrola | 96.93 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 96.89 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.84 |
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-57 Score=540.59 Aligned_cols=610 Identities=14% Similarity=0.182 Sum_probs=432.9
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003363 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (826)
Q Consensus 102 ~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (826)
..+||||++|+|.......-.......+|++++. +++.++|+..+ ..+..|+|||||++|||+++. .+
T Consensus 67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~--~~~~~~l~~~~-----~~~~~~~~SPdG~~la~~~~~-----~i 134 (740)
T 4a5s_A 67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN--KRQLITEERIP-----NNTQWVTWSPVGHKLAYVWNN-----DI 134 (740)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT--TTEECCSSCCC-----TTEEEEEECSSTTCEEEEETT-----EE
T ss_pred eEECCCCCEEEEEECCeeeEEEccceEEEEEECC--CCcEEEcccCC-----CcceeeEECCCCCEEEEEECC-----eE
Confidence 4569999999998765443333445788888864 34556666544 468999999999999999764 36
Q ss_pred EEEe-cCCceeEEEecCC------CccccccCCCc---ccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCC
Q 003363 182 FELW-SQSQLEKEFHVPQ------TVHGSVYADGW---FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCN 251 (826)
Q Consensus 182 ~~i~-~~~~~~~~~~~~~------~~~g~v~~~~~---~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (826)
+... .+++.++++.... +...+||.++. ...++|||||++|||.+.+..... .|......... ...
T Consensus 135 ~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~-~~~~~~~~~~~---~~~ 210 (740)
T 4a5s_A 135 YVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVP-LIEYSFYSDES---LQY 210 (740)
T ss_dssp EEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCC-EEEEEECCSTT---CSS
T ss_pred EEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCc-eEEEEeecCCC---CCC
Confidence 6665 5666666654211 12233333221 246899999999999987664321 22110000000 000
Q ss_pred CCCCcceeecCCCccCCCccCceEEEEEccC---C---ceEeccCCC-----CCCccceEEEeeCCCCCccEEEEEeecC
Q 003363 252 SWKGQGDWEEDWGETYAGKRQPSLFVININS---G---EVQAVKGIP-----KSLSVGQVVWAPLNEGLHQYLVFVGWSS 320 (826)
Q Consensus 252 ~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~---g---~~~~l~~~~-----~~~~~~~~~wSPDg~~~~~~lvf~~~~~ 320 (826)
.......|... |+. .....|+++|+++ + +.+.+. .+ ....+..++|||||+. +++..++.
T Consensus 211 ~~~~~~~yp~~-G~~---~~~~~l~v~d~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~wspdg~~----~~~~~~r~ 281 (740)
T 4a5s_A 211 PKTVRVPYPKA-GAV---NPTVKFFVVNTDSLSSVTNATSIQIT-APASMLIGDHYLCDVTWATQERI----SLQWLRRI 281 (740)
T ss_dssp CEEEEEECCBT-TSC---CCEEEEEEEETTSCCSSSCCCEEEEC-CCHHHHTSCEEEEEEEEEETTEE----EEEEEESS
T ss_pred CcceeecCCCC-cCc---CCeeEEEEEECCCCCCCCcceEEEec-CCccCCCCCeEEEEEEEeCCCeE----EEEEeCCC
Confidence 11112223322 211 1234799999999 8 666663 21 3445778999999998 88877543
Q ss_pred cceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-------ceec--CCCCcc-----ccCceecCCCCEE
Q 003363 321 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-------VVNL--TESISS-----AFFPRFSPDGKFL 386 (826)
Q Consensus 321 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-------~~~L--t~~~~~-----~~~p~~SpDG~~l 386 (826)
.. ...|+++|+ ++++ .+++ ..+... ...|.|||||+.|
T Consensus 282 ~~-----------~~~i~~~d~-----------------~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l 333 (740)
T 4a5s_A 282 QN-----------YSVMDICDY-----------------DESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSF 333 (740)
T ss_dssp TT-----------EEEEEEEEE-----------------ETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEE
T ss_pred CC-----------EEEEEEEEC-----------------CCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEE
Confidence 32 236999998 5554 3333 112222 3489999999999
Q ss_pred E-EEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEe-
Q 003363 387 V-FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW- 464 (826)
Q Consensus 387 ~-f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~- 464 (826)
+ |.+.++ +..+||++|++++..++++.+..++.. .+++||+.|+|.+..
T Consensus 334 ~~~~s~~~--------G~~~l~~~~~~~~~~~~lT~g~~~v~~---------------------~~~~d~~~i~f~~~~~ 384 (740)
T 4a5s_A 334 YKIISNEE--------GYRHICYFQIDKKDCTFITKGTWEVIG---------------------IEALTSDYLYYISNEY 384 (740)
T ss_dssp EEEEECTT--------SCEEEEEEETTCSSCEESCCSSSCEEE---------------------EEEECSSEEEEEESCG
T ss_pred EEEEEcCC--------CceEEEEEECCCCceEecccCCEEEEE---------------------EEEEeCCEEEEEEecC
Confidence 8 666553 457899999999888888766544333 123568899999876
Q ss_pred ---CCeEEEEEEECCCCcEE-EecCC----CCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCC
Q 003363 465 ---GSSQVIISVNVSSGELL-RITPA----ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSS 536 (826)
Q Consensus 465 ---~~~~~l~~vdl~tg~~~-~lt~~----~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~ 536 (826)
.+..+||++++++++.+ +|+.. ...+....||++++.+++.++++. |+.+++.+...++ ...
T Consensus 385 ~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~-~p~~~l~~~~~~~-~~~-------- 454 (740)
T 4a5s_A 385 KGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPG-LPLYTLHSSVNDK-GLR-------- 454 (740)
T ss_dssp GGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBS-SCEEEEEETTTTE-EEE--------
T ss_pred CCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCC-CCEEEEEECCCCc-EEE--------
Confidence 46789999999887765 77754 234566789999999999999987 8899998865432 111
Q ss_pred CCCCCchhhhhcccccceeeeeecccCceeeeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-ccch-HHH
Q 003363 537 PISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYS-KSL 614 (826)
Q Consensus 537 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~~-~~~ 614 (826)
+...|+.+...+....+...+. ..+ ..+|.+++++++.|+++++.+++|+||++|||++.... ..|. ...
T Consensus 455 -~l~~n~~~~~~~~~~~~~~~~~------~~~-~~dg~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~ 526 (740)
T 4a5s_A 455 -VLEDNSALDKMLQNVQMPSKKL------DFI-ILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWA 526 (740)
T ss_dssp -EEECCHHHHHHHTTEECCEEEE------EEE-EETTEEEEEEEEECTTCCTTSCEEEEEECCCCTTCCCCCCCCCCSHH
T ss_pred -EeccChhhhhhhhhccCCccEE------EEE-ccCCeEEEEEEEeCCCCCCCCCccEEEEECCCCcccccccccCcCHH
Confidence 1223444434343332221111 122 45789999999999988778899999999999877432 2222 233
Q ss_pred HHHH-HCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCC
Q 003363 615 AFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP 693 (826)
Q Consensus 615 ~~la-~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p 693 (826)
..|+ ++||+|+++|+||++++|..+.......++..+++|+.++++++.+++.+|++||+|+|||+||++++.++.++|
T Consensus 527 ~~l~~~~G~~Vv~~D~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~a~~~p 606 (740)
T 4a5s_A 527 TYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGS 606 (740)
T ss_dssp HHHHHTTCCEEEEECCTTCSSSCHHHHGGGTTCTTSHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHTTTC
T ss_pred HHHHhcCCeEEEEEcCCCCCcCChhHHHHHHhhhCcccHHHHHHHHHHHHhcCCcCCccEEEEEECHHHHHHHHHHHhCC
Confidence 4555 599999999999999999998888888888888999999999999888899999999999999999999999999
Q ss_pred CceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCC-ChhhHHHHhhcCcccccCCCCC-cEEEEEeCCCC
Q 003363 694 DKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESP-SVEDLTRFHSKSPISHISKVKT-PTIFLLGAQDL 771 (826)
Q Consensus 694 ~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~~~~~~i~~-PvLii~G~~D~ 771 (826)
++|+++|+.+|+.++..+.. .+.+. +.+.+ ..+..+.+...+|...+.++++ |+||+||+.|.
T Consensus 607 ~~~~~~v~~~p~~~~~~~~~-------~~~~~--------~~~~p~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~ 671 (740)
T 4a5s_A 607 GVFKCGIAVAPVSRWEYYDS-------VYTER--------YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADD 671 (740)
T ss_dssp SCCSEEEEESCCCCGGGSBH-------HHHHH--------HHCCSSTTTTHHHHHHSCSGGGGGGGGGSEEEEEEETTCS
T ss_pred CceeEEEEcCCccchHHhhh-------HHHHH--------HcCCCCccccHHHHHhCCHHHHHhcCCCCcEEEEEcCCCC
Confidence 99999999999988654311 11111 11222 1345667888899999999987 99999999999
Q ss_pred CCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 772 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 772 ~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
+||+.++.+++++|+++|+++++++||+++|.+...+...+++..+.+||+++|+
T Consensus 672 ~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 726 (740)
T 4a5s_A 672 NVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 726 (740)
T ss_dssp SSCTHHHHHHHHHHHHTTCCCEEEEETTCCTTCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHCCCCeEEEEECCCCCcCCCCccHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999997666677889999999999874
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-53 Score=495.71 Aligned_cols=561 Identities=16% Similarity=0.216 Sum_probs=412.1
Q ss_pred HHHHHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceeccc
Q 003363 77 EEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGA 156 (826)
Q Consensus 77 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~ 156 (826)
-+|.+..+.++++...+ .....+ ||||++|+|..... ....||. + .+++.+++|.... ..+
T Consensus 7 ~~~~~~~~~~~~~~~~~--~~~~~~---~~DG~~la~~s~~~------g~~~lw~--~--~~g~~~~lt~~~~----~~~ 67 (582)
T 3o4h_A 7 VEFSRIVRDVERLIAVE--KYSLQG---VVDGDKLLVVGFSE------GSVNAYL--Y--DGGETVKLNREPI----NSV 67 (582)
T ss_dssp CCHHHHHHHHHHHHHSC--EEEEEE---EETTTEEEEEEEET------TEEEEEE--E--ETTEEEECCSSCC----SEE
T ss_pred ccHHHHHHHHHHHhccc--hheeec---CCCCCeEEEEEccC------CceeEEE--E--cCCCcEeeecccc----ccc
Confidence 34666666777776665 223333 79999999986532 2456776 3 3456677765541 257
Q ss_pred EEEEeCCCCCeEEEEecCC--CCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 157 SAVVPSPSGSKLLVVRNPE--NESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 157 ~~~~~SPdG~~la~~~~~~--~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
..++|||| +++|.+..+ ++...+|.+.. .+...+++.. .+. ...+|||||+.++|++...
T Consensus 68 ~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~-~~~----------~~~~~s~dg~~~~~~s~~~--- 131 (582)
T 3o4h_A 68 LDPHYGVG--RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV-KPM----------RILSGVDTGEAVVFTGATE--- 131 (582)
T ss_dssp CEECTTCS--EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTS-CSB----------EEEEEEECSSCEEEEEECS---
T ss_pred ccccCCCC--eEEEEeccCCCCcceEEEEEeccCCCccccccCC-CCc----------eeeeeCCCCCeEEEEecCC---
Confidence 88999999 677877652 23335666654 5554433221 122 4668999999999986543
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (826)
..+.+||+++|+.+.+. .... .+++|||||+.
T Consensus 132 ----------------------------------------~~~~l~d~~~g~~~~l~--~~~~--~~~~~spDG~~---- 163 (582)
T 3o4h_A 132 ----------------------------------------DRVALYALDGGGLRELA--RLPG--FGFVSDIRGDL---- 163 (582)
T ss_dssp ----------------------------------------SCEEEEEEETTEEEEEE--EESS--CEEEEEEETTE----
T ss_pred ----------------------------------------CCceEEEccCCcEEEee--cCCC--ceEEECCCCCE----
Confidence 23447899999988884 2222 78999999999
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
|+|.+..... ...||++|+ ++++.++|+.+.+....|+|||||++|+ .+..
T Consensus 164 la~~~~~~~~-----------~~~i~~~d~-----------------~~g~~~~l~~~~~~~~~~~~SpDG~~l~-~~~~ 214 (582)
T 3o4h_A 164 IAGLGFFGGG-----------RVSLFTSNL-----------------SSGGLRVFDSGEGSFSSASISPGMKVTA-GLET 214 (582)
T ss_dssp EEEEEEEETT-----------EEEEEEEET-----------------TTCCCEEECCSSCEEEEEEECTTSCEEE-EEEC
T ss_pred EEEEEEcCCC-----------CeEEEEEcC-----------------CCCCceEeecCCCccccceECCCCCEEE-EccC
Confidence 9988743221 136999998 7888899998888889999999999998 4433
Q ss_pred CCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCc--------cccCCCEEEEEEEe
Q 003363 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP--------WLSDGCTMLLSSIW 464 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~--------ws~Dg~~l~~~~~~ 464 (826)
+ +..+|+++|+.+++.+ +...... .+..+. |+||| .+++++..
T Consensus 215 ~--------~~~~i~~~d~~~~~~~-~~~~~~~-------------------~~~~~~~~~~~~~~~spdg-~~~~~~~~ 265 (582)
T 3o4h_A 215 A--------REARLVTVDPRDGSVE-DLELPSK-------------------DFSSYRPTAITWLGYLPDG-RLAVVARR 265 (582)
T ss_dssp S--------SCEEEEEECTTTCCEE-ECCCSCS-------------------HHHHHCCSEEEEEEECTTS-CEEEEEEE
T ss_pred C--------CeeEEEEEcCCCCcEE-EccCCCc-------------------ChhhhhhccccceeEcCCC-cEEEEEEc
Confidence 2 2368999999887654 2221110 112334 99999 68888888
Q ss_pred CCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchh
Q 003363 465 GSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEK 544 (826)
Q Consensus 465 ~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (826)
++...||.+ |+..+. . .+.+....++ + +.+++..++..+|+++++.++.+ + ... | .+++.
T Consensus 266 ~g~~~l~~~----g~~~~~-~-~~~v~~~~~s-d-g~~l~~~s~~~~p~~l~~~d~~~-~-~~~---------l-~~~~~ 325 (582)
T 3o4h_A 266 EGRSAVFID----GERVEA-P-QGNHGRVVLW-R-GKLVTSHTSLSTPPRIVSLPSGE-P-LLE---------G-GLPED 325 (582)
T ss_dssp TTEEEEEET----TEEECC-C-SSEEEEEEEE-T-TEEEEEEEETTEEEEEEEETTCC-E-EEC---------C-CCCHH
T ss_pred CCcEEEEEE----CCeecc-C-CCceEEEEec-C-CEEEEEEcCCCCCCeEEEEcCCC-c-eEE---------E-ecCCc
Confidence 888888876 555542 2 2334445667 4 46678888899999999988643 2 111 1 11110
Q ss_pred hhhcccccce-eeeeecccCceeeeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcE
Q 003363 545 VKSLLSSRQF-SIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYS 623 (826)
Q Consensus 545 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~ 623 (826)
.. ..+ .... ..+...+|.+++++++.|++.. .++|+||++||+++......|...++.|+++||.
T Consensus 326 ~~-----~~~~~~~~-------~~~~~~~g~~i~~~~~~p~~~~--~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~ 391 (582)
T 3o4h_A 326 LR-----RSIAGSRL-------VWVESFDGSRVPTYVLESGRAP--TPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFH 391 (582)
T ss_dssp HH-----HTEEEEEE-------EEEECTTSCEEEEEEEEETTSC--SSEEEEEEECSSSSCCCCSSCCHHHHHHHHTTCE
T ss_pred cc-----cccCcceE-------EEEECCCCCEEEEEEEcCCCCC--CCCcEEEEECCCcccccccccCHHHHHHHhCCCE
Confidence 00 111 1111 2445557889999999998643 3889999999998876666788899999999999
Q ss_pred EEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecC
Q 003363 624 LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 703 (826)
Q Consensus 624 Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 703 (826)
|+++|+||++++|.++.......++...++|+.++++++++++.+| +|+|+|||+||++++.++.++|++++++|+.+
T Consensus 392 v~~~d~rG~~~~G~s~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d--~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~ 469 (582)
T 3o4h_A 392 VVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGA 469 (582)
T ss_dssp EEEECCTTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHHTTCEE--EEEEEEETHHHHHHHHHHHHSTTTSSCEEEES
T ss_pred EEEeccCCCCCCchhHHhhhhhhcccccHHHHHHHHHHHHhCCCcc--eEEEEEECHHHHHHHHHHhcCCCceEEEEEcC
Confidence 9999999999999999887788888888999999999999997776 99999999999999999999999999999999
Q ss_pred CccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHH
Q 003363 704 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYAR 783 (826)
Q Consensus 704 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~ 783 (826)
|+.++..+....+.....+.+. +.+ +..+.+...+|+..+.++++|+|++||++|.++|+.+++++++
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~--------~~~----~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~ 537 (582)
T 3o4h_A 470 SVVDWEEMYELSDAAFRNFIEQ--------LTG----GSREIMRSRSPINHVDRIKEPLALIHPQNASRTPLKPLLRLMG 537 (582)
T ss_dssp CCCCHHHHHHTCCHHHHHHHHH--------HTT----TCHHHHHHTCGGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHH
T ss_pred CccCHHHHhhcccchhHHHHHH--------HcC----cCHHHHHhcCHHHHHhcCCCCEEEEecCCCCCcCHHHHHHHHH
Confidence 9998876654332211001111 111 3456677889999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 784 ALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 784 ~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
+|+.+|++++++++|+++|.+..++...+++..+.+||+++|+
T Consensus 538 ~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~fl~~~l~ 580 (582)
T 3o4h_A 538 ELLARGKTFEAHIIPDAGHAINTMEDAVKILLPAVFFLATQRE 580 (582)
T ss_dssp HHHHTTCCEEEEEETTCCSSCCBHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCEEEEEECCCCCCCCChHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999988666677899999999999985
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-52 Score=497.10 Aligned_cols=593 Identities=18% Similarity=0.234 Sum_probs=422.8
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccee----cccEEEEe--CCCCCe-EEEEec
Q 003363 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEM----TGASAVVP--SPSGSK-LLVVRN 173 (826)
Q Consensus 101 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~----~~~~~~~~--SPdG~~-la~~~~ 173 (826)
.+..|+ +.++|...+.+ ...+..||.. ..++..++|+..+..... .+...+.| ||||++ |+|...
T Consensus 28 ~~~~s~--~~~~~~~~~~~---~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~ 99 (662)
T 3azo_A 28 CVGAVG--DEVWWVAPRPA---EAGRATLVRR---RADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF 99 (662)
T ss_dssp EEEEET--TEEEEEEEETT---TTTEEEEEEE---CTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred eeEEcC--CeEEEEecCcc---cCCcEEEEEE---CCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEEC
Confidence 334454 46778766433 1235677775 234556777766522100 00114555 499999 999865
Q ss_pred CCCCCCeEEEEecC----CceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcc
Q 003363 174 PENESPIQFELWSQ----SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKD 249 (826)
Q Consensus 174 ~~~~~~~~~~i~~~----~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (826)
. ..++|.+..+ +..++++......++ .....++|||||++|+|.+++....
T Consensus 100 ~---~~~l~~~~~~~~g~~~~~~l~~~~~~~~~-----~~~~~~~~spDg~~l~~~~~~~~~~----------------- 154 (662)
T 3azo_A 100 G---DQRLYAFEPDAPGGAVPRPLTPVSAVGGG-----LRWADPVLLPERGEVWCMAEEFTGE----------------- 154 (662)
T ss_dssp T---TCCEEEECTTSTTCCCCEECSCCCCSTTC-----EEEEEEEEETTTTEEEEEEEEECSS-----------------
T ss_pred C---CCeEEEEcCCCCCCCCCEeccCCccCCCC-----ccccCcEECCCCCEEEEEEecccCC-----------------
Confidence 4 3468877744 666666553211111 1236899999999999998753110
Q ss_pred CCCCCCcceeecCCCccCCCccCceEEEEEccC------CceEeccCC-CCCCccceEEEeeCCCCCccEEEEEeecCcc
Q 003363 250 CNSWKGQGDWEEDWGETYAGKRQPSLFVININS------GEVQAVKGI-PKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 322 (826)
Q Consensus 250 ~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~------g~~~~l~~~-~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~ 322 (826)
+. .....+|+++|+++ ++.+.+ + .+...+..++|||||+. |+|.++....
T Consensus 155 --------------~~---~~~~~~i~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~SpDG~~----la~~~~~~~~ 211 (662)
T 3azo_A 155 --------------GP---SDVRRFLAAVPLDGSAAADRSAVREL--SDDAHRFVTGPRLSPDGRQ----AVWLAWDHPR 211 (662)
T ss_dssp --------------ST---TCEEEEEEEEETTSTTTTCGGGSEES--SCSCSSEECCCEECTTSSE----EEEEEECTTC
T ss_pred --------------CC---CCceeEEEEEECCCCccccCCceeEE--EecCCCcccCceECCCCCE----EEEEECCCCC
Confidence 00 11447899999999 888888 5 44556678999999999 9999864421
Q ss_pred eeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCC-CC---cceecCCC-CccccCceecCCCCEEEEEeccCCCCC
Q 003363 323 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE-DL---PVVNLTES-ISSAFFPRFSPDGKFLVFLSAKSSVDS 397 (826)
Q Consensus 323 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~-~~---~~~~Lt~~-~~~~~~p~~SpDG~~l~f~s~~~~~~~ 397 (826)
.. + ....||++|+ + ++ +.++|+.. ......|.|||||+ |+|.+..+
T Consensus 212 ~~----~---~~~~i~~~d~-----------------~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~---- 262 (662)
T 3azo_A 212 MP----W---EGTELKTARV-----------------TEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRT---- 262 (662)
T ss_dssp CT----T---TCEEEEEEEE-----------------CTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTT----
T ss_pred CC----C---CCcEEEEEEE-----------------CCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCC----
Confidence 10 0 1247999998 5 45 66777764 56788999999999 88888664
Q ss_pred CCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCC
Q 003363 398 GAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS 477 (826)
Q Consensus 398 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~t 477 (826)
+..+||++|+.+++.+.++...... ..+ .|......+.|++|++ +++.... +...||.+|+++
T Consensus 263 ----~~~~l~~~~~~~~~~~~l~~~~~~~----------~~p-~w~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~d~~~ 325 (662)
T 3azo_A 263 ----GWWNLHRVDPATGAATQLCRREEEF----------AGP-LWTPGMRWFAPLANGL-IAVVHGK-GAAVLGILDPES 325 (662)
T ss_dssp ----SSCEEEEECTTTCCEEESSCCSSBS----------SCC-CCSTTCCSEEECTTSC-EEEEEBS-SSCEEEEEETTT
T ss_pred ----CCeEEEEEECCCCceeecccccccc----------cCc-cccccCceEeEeCCCE-EEEEEEc-CccEEEEEECCC
Confidence 3468999998776654443322110 000 1222234567788887 6666666 888999999999
Q ss_pred CcEEEecCCCCCeeeEEE-eecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhhhhcccccceee
Q 003363 478 GELLRITPAESNFSWSLL-TLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSI 556 (826)
Q Consensus 478 g~~~~lt~~~~~~~~~~~-s~dg~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 556 (826)
++.++|+.....+ ..+ +++++.++++.++.+.|.+||++++.+++ ...+ +..+. ..+....+..
T Consensus 326 ~~~~~l~~~~~~~--~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~-~~~l---------~~~~~---~~~~~~~~~~ 390 (662)
T 3azo_A 326 GELVDAAGPWTEW--AATLTVSGTRAVGVAASPRTAYEVVELDTVTGR-ARTI---------GARHT---DPVDPAYYPE 390 (662)
T ss_dssp TEEEECCSSCCEE--EEEEEEETTEEEEEEEETTEEEEEEEEETTTCC-EEEE---------ESCCC---CSSCGGGSCC
T ss_pred CcEEEecCCCCeE--EEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc-eEEe---------ecCCc---ccCCccccCc
Confidence 9999987765533 344 88999999999999999999999876543 1111 11110 0011111110
Q ss_pred eeecccCceeeeccCCCeeEEEEEEecCCCC----CCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCC
Q 003363 557 MKIPVKGVSANLTKGAQKPFEAIFVSSSHKK----DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS 632 (826)
Q Consensus 557 ~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~----~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~ 632 (826)
. ....+...+|..++++++.|++++ .++++|+||++||+++......|...++.|+++||.|+++|+||+
T Consensus 391 ----~--~~~~~~~~dg~~i~~~~~~P~~~~~~~~~~~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~ 464 (662)
T 3azo_A 391 ----P--QIRTFTAPDGREIHAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYGGS 464 (662)
T ss_dssp ----C--EEEEEECTTSCEEEEEEECCCCSSEECCTTCCCCEEEEECSSSSSCCCCSCCHHHHHHHTTTCEEEEEECTTC
T ss_pred ----c--eEEEEEcCCCCEEEEEEECCCCccccCCCCCCccEEEEECCCCCccCcccchHHHHHHHhCCCEEEEECCCCC
Confidence 0 112344557889999999998754 457899999999998776555788889999999999999999999
Q ss_pred CCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhc
Q 003363 633 LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712 (826)
Q Consensus 633 ~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~ 712 (826)
+++|.++.......++..+++|+.++++++++++.+|++||+|+|||+||+++++++.+ |++|+++|+.+|+.++..+.
T Consensus 465 ~~~G~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~~~~-~~~~~~~v~~~~~~~~~~~~ 543 (662)
T 3azo_A 465 TGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLVS-TDVYACGTVLYPVLDLLGWA 543 (662)
T ss_dssp SSSCHHHHHTTTTTTTTHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHH-CCCCSEEEEESCCCCHHHHH
T ss_pred CCccHHHHHhhccccccccHHHHHHHHHHHHHcCCcChhhEEEEEECHHHHHHHHHHhC-cCceEEEEecCCccCHHHHh
Confidence 99999998777777777889999999999999988999999999999999999998886 99999999999999887654
Q ss_pred c-CCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCC
Q 003363 713 G-TTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVE 791 (826)
Q Consensus 713 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~ 791 (826)
. ........+... +.+.. .+..+.+...+|+..+.++++|+|++||++|.+||+.++++++++|++.|++
T Consensus 544 ~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~sp~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~ 614 (662)
T 3azo_A 544 DGGTHDFESRYLDF--------LIGSF-EEFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCPPEQCDRFLEAVAGCGVP 614 (662)
T ss_dssp TTCSCGGGTTHHHH--------HTCCT-TTCHHHHHHTCGGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHHTTSCCC
T ss_pred cccccchhhHhHHH--------HhCCC-ccchhHHHhhChHhHhccCCCCEEEEeeCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 3 111100011111 11111 2455677788999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 792 TKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 792 ~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
++++++|+++|.+...+...+.+..+.+||.++|+
T Consensus 615 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 649 (662)
T 3azo_A 615 HAYLSFEGEGHGFRRKETMVRALEAELSLYAQVFG 649 (662)
T ss_dssp EEEEEETTCCSSCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCCCChHHHHHHHHHHHHHHHHHhC
Confidence 99999999999987666667889999999999874
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-53 Score=506.98 Aligned_cols=619 Identities=16% Similarity=0.169 Sum_probs=417.3
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCe
Q 003363 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 180 (826)
Q Consensus 101 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 180 (826)
.+.+||||++|+|...............++++++.+. +.++++...- ....+..++|||||++|||+++. +
T Consensus 65 ~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~l~~~~~--~~~~~~~~~~SPdG~~la~~~~~-----~ 135 (723)
T 1xfd_A 65 RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG--DPQSLDPPEV--SNAKLQYAGWGPKGQQLIFIFEN-----N 135 (723)
T ss_dssp EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC--CCEECCCTTC--CSCCCSBCCBCSSTTCEEEEETT-----E
T ss_pred eEEECCCCCEEEEEecCccceeecceeeEEEEECCCC--ceEeccCCcc--ccccccccEECCCCCEEEEEECC-----e
Confidence 3456999999999876544333334578888887433 3344543321 00236789999999999999873 4
Q ss_pred EEEEe-cCCceeEEEecCC------CccccccCCCc---ccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccC
Q 003363 181 QFELW-SQSQLEKEFHVPQ------TVHGSVYADGW---FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDC 250 (826)
Q Consensus 181 ~~~i~-~~~~~~~~~~~~~------~~~g~v~~~~~---~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (826)
++.++ .+++..+++.... +..+++|.++. ...++|||||++|||.+.+.... ..+...... .. .
T Consensus 136 i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~-~~~~~~~~~-~~----~ 209 (723)
T 1xfd_A 136 IYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRV-PIMELPTYT-GS----I 209 (723)
T ss_dssp EEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTS-CEEEECCCS-SS----S
T ss_pred EEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCcc-ceEEeeccC-Cc----C
Confidence 66666 5666777765321 11122333322 25799999999999998765321 112211000 00 0
Q ss_pred CCCCCcceeecCCCccCCCccCceEEEEEccCCce-EeccCCC----CCCccceEEEeeCCCCCccEEEEEeecCcceee
Q 003363 251 NSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIP----KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL 325 (826)
Q Consensus 251 ~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~-~~l~~~~----~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~ 325 (826)
........|.++ |.. .....|++||+++++. +.++... ....+..++|||||+. |++...+..
T Consensus 210 ~~~~~~~~~~~~-G~~---~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~----l~~~~~~~~---- 277 (723)
T 1xfd_A 210 YPTVKPYHYPKA-GSE---NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKV----AVTWLNRAQ---- 277 (723)
T ss_dssp SCCCEEEECCBT-TSC---CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEE----EEEEEETTS----
T ss_pred CCcceeccCCCC-CCC---CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeE----EEEEEcCCC----
Confidence 011123334443 321 1345899999999884 6663110 1345678999999997 877664322
Q ss_pred eeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC--Cccc----cCceecCCCCEEEEEeccCCCCCCC
Q 003363 326 GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES--ISSA----FFPRFSPDGKFLVFLSAKSSVDSGA 399 (826)
Q Consensus 326 g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~--~~~~----~~p~~SpDG~~l~f~s~~~~~~~g~ 399 (826)
....|+++|+ .+++...+... .+.. ..|.|||||++|+|.+.... |.
T Consensus 278 -------~~~~i~~~d~-----------------~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~---~~ 330 (723)
T 1xfd_A 278 -------NVSILTLCDA-----------------TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ---GG 330 (723)
T ss_dssp -------CEEEEEEEET-----------------TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC---SS
T ss_pred -------CeEEEEEEeC-----------------CCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEeccc---CC
Confidence 2237999998 67776655322 2222 48999999999999843321 22
Q ss_pred CcccceEEEEe-CCCCC---CCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC--CeEEEEEE
Q 003363 400 HSATDSLHRID-WPTNG---NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG--SSQVIISV 473 (826)
Q Consensus 400 ~~~~~~l~~~d-~~~~~---~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~--~~~~l~~v 473 (826)
+....+||++| ..++. .+.++.+..++. ..+.|+|||+.|++.+..+ +...||.+
T Consensus 331 ~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~-------------------~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 331 RGKFYHITVSSSQPNSSNDNIQSITSGDWDVT-------------------KILAYDEKGNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp SSCEEEEEEECSSCCSSSCCCCBSCCSSSCEE-------------------EEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred CcceeEEEEEeccCCCCccceeEeecCCeEEE-------------------eeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence 22356899999 45555 444443221111 1257999999999887765 67899999
Q ss_pred ECCCC-cEEEecCC---CCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhhhhcc
Q 003363 474 NVSSG-ELLRITPA---ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLL 549 (826)
Q Consensus 474 dl~tg-~~~~lt~~---~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 549 (826)
++.++ +.++|+.. ...+....|++||+.+++..++++.|..+++ +.... ..+.+- +.++.+...+
T Consensus 392 ~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~-~~~~~---~~~~~~-------~~~~~~~~~~ 460 (723)
T 1xfd_A 392 NTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVH-NTTDK---KKMFDL-------ETNEHVKKAI 460 (723)
T ss_dssp CSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEE-ETTTC---CEEEEE-------ECCHHHHHHH
T ss_pred eCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEE-ECCCC---CEEEEe-------ccChhhhhhh
Confidence 98765 56667642 3345567899999999999999999986654 43221 222111 1122222223
Q ss_pred cccceeeeeecccCceeeeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-Ccc--chHHHHHHHHCCcEEEE
Q 003363 550 SSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSS--YSKSLAFLSSVGYSLLI 626 (826)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~-~~~--~~~~~~~la~~G~~Vl~ 626 (826)
....+. ..+.+ .+...+| +++++++.|++++..+++|+||++||+++... ... +....+.|+++||+|++
T Consensus 461 ~~~~~~----~~~~~--~~~~~~g-~l~~~~~~P~~~~~~~~~p~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~vv~ 533 (723)
T 1xfd_A 461 NDRQMP----KVEYR--DIEIDDY-NLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVK 533 (723)
T ss_dssp HTSCCC----BCCBC--CEEETTE-EECCBEEBCSSCCSSSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEEC
T ss_pred hhccCC----CceEE--EEEcCCc-eEEEEEEeCCCCCCCCccCEEEEEcCCCCccccCccccccHHHHHhhcCCEEEEE
Confidence 332221 11111 3344566 89999999998767788999999999887642 222 33556678889999999
Q ss_pred ECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhC----CCceeEEEec
Q 003363 627 VNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA----PDKFVAAAAR 702 (826)
Q Consensus 627 ~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~----p~~~~a~v~~ 702 (826)
+|+||++++|..+.......++...++|+.++++++.+++.+|++||+|+|||+||++++.++.++ |++|+++|+.
T Consensus 534 ~d~rG~g~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~v~~ 613 (723)
T 1xfd_A 534 CDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSAL 613 (723)
T ss_dssp CCCTTCSSSHHHHHHTTTTCTTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEE
T ss_pred ECCCCCccccHHHHHHHHhccCcccHHHHHHHHHHHHhCCCcChhhEEEEEECHHHHHHHHHHHhccccCCCeEEEEEEc
Confidence 999999999888876666677777899999999999988778999999999999999999999999 9999999999
Q ss_pred CCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCC-CcEEEEEeCCCCCCCcHHHHHH
Q 003363 703 NPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQY 781 (826)
Q Consensus 703 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~PvLii~G~~D~~vp~~~~~~~ 781 (826)
+|+.++..+. ..+.+.+.. .+. ...+.+...++...+.+++ +|+||+||++|.++|+++++++
T Consensus 614 ~~~~~~~~~~-------~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~ 677 (723)
T 1xfd_A 614 SPITDFKLYA-------SAFSERYLG--------LHG-LDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAEL 677 (723)
T ss_dssp SCCCCTTSSB-------HHHHHHHHC--------CCS-SCCSSTTTTCTHHHHTSCCSCEEEEEEETTCSSSCHHHHHHH
T ss_pred cCCcchHHhh-------hhccHhhcC--------Ccc-CChhHHHhcChhhHHhhcCCCCEEEEEeCCCCCcCHhHHHHH
Confidence 9988764321 111111100 010 0111334456667788999 7999999999999999999999
Q ss_pred HHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 782 ARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 782 ~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
+++|++++++++++++|+++|.+...+...+++..+.+||+++|+
T Consensus 678 ~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 722 (723)
T 1xfd_A 678 ITQLIRGKANYSLQIYPDESHYFTSSSLKQHLYRSIINFFVECFR 722 (723)
T ss_dssp HHHHHHTTCCCEEEEETTCCSSCCCHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHCCCCeEEEEECCCCcccccCcchHHHHHHHHHHHHHHhc
Confidence 999999999999999999999986666667889999999999875
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-50 Score=483.69 Aligned_cols=594 Identities=13% Similarity=0.135 Sum_probs=416.8
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeec-CCccee-cccEEEEeCCCCCeEEEEecCCCC-CCeE
Q 003363 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWA-PFPVEM-TGASAVVPSPSGSKLLVVRNPENE-SPIQ 181 (826)
Q Consensus 105 s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~-~~~~~~-~~~~~~~~SPdG~~la~~~~~~~~-~~~~ 181 (826)
+|||++++|...... .....||..+.. +++.+.|... .+..+. ..+..++|||||++|||.....+. ..++
T Consensus 80 ~~dG~~~~~~~~~~~----~~~~~l~~~~~~--~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i 153 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGL----QNQRVLYVQDSL--EGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTI 153 (710)
T ss_dssp EEETTEEEEEEECSS----CSSCEEEEESST--TSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEE
T ss_pred EEECCEEEEEEEcCC----ceEEEEEEEcCC--CCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEE
Confidence 499999999876532 345577876642 3334433322 111110 136789999999999999876532 2367
Q ss_pred EEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceee
Q 003363 182 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (826)
Q Consensus 182 ~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (826)
++++ .+++..+.+...... ..++|||||+.|+|.+.+...... .
T Consensus 154 ~v~d~~tg~~~~~~~~~~~~----------~~~~wspDg~~l~~~~~~~~~~~~--------~----------------- 198 (710)
T 2xdw_A 154 KFMKVDGAKELPDVLERVKF----------SCMAWTHDGKGMFYNAYPQQDGKS--------D----------------- 198 (710)
T ss_dssp EEEETTTTEEEEEEEEEECS----------CCEEECTTSSEEEEEECCCCSSCC--------S-----------------
T ss_pred EEEECCCCCCCcccccCccc----------ceEEEEeCCCEEEEEEECCccccc--------c-----------------
Confidence 7666 566655543222122 689999999999999866531100 0
Q ss_pred cCCCccCCCccCceEEEEEccCCceE--ec-cCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCce
Q 003363 261 EDWGETYAGKRQPSLFVININSGEVQ--AV-KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCAL 337 (826)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~~--~l-~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l 337 (826)
+..........||++++.+++.+ .+ .+.........+.|||||+. |++.+.+... ....|
T Consensus 199 ---~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~----l~~~~~~~~~----------~~~~l 261 (710)
T 2xdw_A 199 ---GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY----VLLSIREGCD----------PVNRL 261 (710)
T ss_dssp ---SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE----EEEEEECSSS----------SCCEE
T ss_pred ---ccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE----EEEEEEccCC----------CccEE
Confidence 00000113468999999888632 23 11111223557899999999 9998743211 13589
Q ss_pred EEEEcccccchhhhhhhhcCCCCC------C--cceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEE
Q 003363 338 YAVRVSLYKSEASELELKESSSED------L--PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 409 (826)
Q Consensus 338 ~~~d~~~~~~~~~~~~~~~~~~~~------~--~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~ 409 (826)
|++|+ .+ + ..++|+...... ...|+|||++|+|.++.. ....+|+++
T Consensus 262 ~~~d~-----------------~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~-------~~~~~l~~~ 316 (710)
T 2xdw_A 262 WYCDL-----------------QQESNGITGILKWVKLIDNFEGE-YDYVTNEGTVFTFKTNRH-------SPNYRLINI 316 (710)
T ss_dssp EEEEG-----------------GGSSSSSCSSCCCEEEECSSSSC-EEEEEEETTEEEEEECTT-------CTTCEEEEE
T ss_pred EEEEC-----------------cccccccCCccceEEeeCCCCcE-EEEEeccCCEEEEEECCC-------CCCCEEEEE
Confidence 99998 33 3 467777654443 346999999999998764 235789999
Q ss_pred eCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc-EEEecCCCC
Q 003363 410 DWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE-LLRITPAES 488 (826)
Q Consensus 410 d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~-~~~lt~~~~ 488 (826)
|+.+++... ...+++ . .+. ..+..+.|+++ ..|+++...++...|+.+|+.+|+ .+.|....+
T Consensus 317 d~~~~~~~~----~~~l~~---~-~~~-------~~~~~~~~~~~-~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~ 380 (710)
T 2xdw_A 317 DFTDPEESK----WKVLVP---E-HEK-------DVLEWVACVRS-NFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVG 380 (710)
T ss_dssp ETTSCCGGG----CEEEEC---C-CSS-------CEEEEEEEETT-TEEEEEEEETTEEEEEEEETTTCCEEEEECCCSS
T ss_pred eCCCCCccc----ceeccC---C-CCC-------CeEEEEEEEcC-CEEEEEEEECCEEEEEEEECCCCCEEEecCCCCc
Confidence 988754210 011111 0 000 01234578754 468888888899999999996665 577776544
Q ss_pred CeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccCC-CceeeeeccCCCCCCCchhhhhcccccceeeeeecccCceee
Q 003363 489 NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKAN-KGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSAN 567 (826)
Q Consensus 489 ~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 567 (826)
.+....++++++.+++..+++.+|.++|++++.+++. ...+ ... ++..++ ...+....+ .
T Consensus 381 ~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~~~l--~~~--~~~~~~--------~~~~~~~~~-------~ 441 (710)
T 2xdw_A 381 SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVF--REV--TVKGID--------ASDYQTVQI-------F 441 (710)
T ss_dssp EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEE--EEC--CCTTCC--------GGGEEEEEE-------E
T ss_pred eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCccceEEe--eec--ccCCcC--------ccccEEEEE-------E
Confidence 4444567788999999999999999999999865431 1111 110 111111 111222222 4
Q ss_pred eccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHH-CCcEEEEECCCCCCCCchhhhhcCCCC
Q 003363 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGK 646 (826)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~-~G~~Vl~~d~rG~~g~G~~~~~~~~~~ 646 (826)
+...+|..++++++.|+++...++.|+||++|||++......|......|++ +||+|+++|+||++++|..+.......
T Consensus 442 ~~~~dg~~i~~~~~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~~G~~v~~~d~rG~g~~g~~~~~~~~~~ 521 (710)
T 2xdw_A 442 YPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILA 521 (710)
T ss_dssp EECTTSCEEEEEEEEETTCCCSSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSSTTHHHHHHTTSGG
T ss_pred EEcCCCCEEEEEEEecCCCCCCCCccEEEEEcCCCCCcCCCcccHHHHHHHHhCCcEEEEEccCCCCCCChHHHHhhhhh
Confidence 4556788999999999987667889999999999887665667766677777 999999999999999999988766666
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhc
Q 003363 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 726 (826)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 726 (826)
.+...++|+.+++++|++++.+|++||+|+|+|+||++++.++.++|++|+++|+.+|+.++..+........| ...+
T Consensus 522 ~~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~--~~~~ 599 (710)
T 2xdw_A 522 NKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAW--TTDY 599 (710)
T ss_dssp GTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGG--HHHH
T ss_pred cCCchHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHHhCccceeEEEEcCCcccHhhccccCCChhH--HHhC
Confidence 66677899999999999998899999999999999999999999999999999999999987655432211112 1222
Q ss_pred cCcCCccCCCCCChhhHHHHhhcCcccccC-----CCCC-cEEEEEeCCCCCCCcHHHHHHHHHHHhC-------CCCEE
Q 003363 727 GSKGKDSFTESPSVEDLTRFHSKSPISHIS-----KVKT-PTIFLLGAQDLRVPVSNGLQYARALREK-------GVETK 793 (826)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~-----~i~~-PvLii~G~~D~~vp~~~~~~~~~~l~~~-------g~~~~ 793 (826)
+. ....+..+.+...+|+.++. ++++ |+||+||++|.+||+.++.+++++|+.. |.+++
T Consensus 600 g~--------~~~~~~~~~~~~~sp~~~~~~~~~~~~~~pP~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~ 671 (710)
T 2xdw_A 600 GC--------SDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLL 671 (710)
T ss_dssp CC--------TTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTTSTTCCSCEE
T ss_pred CC--------CCCHHHHHHHHHhCcHhhhcccccccCCCCcEEEEEeCCCCccChhHHHHHHHHHHhhhccccCCCcCEE
Confidence 22 12345566777889999998 7886 9999999999999999999999999988 89999
Q ss_pred EEEeCCCCCCCCCCC-CHHHHHHHHHHHHHHHcC
Q 003363 794 VIVFPNDVHGIERPQ-SDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 794 ~~~~p~~~H~~~~~~-~~~~~~~~i~~w~~~~l~ 826 (826)
+++++++||++..+. ...+.+..+.+||.++|+
T Consensus 672 ~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 705 (710)
T 2xdw_A 672 IHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 705 (710)
T ss_dssp EEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCcCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 999999999987653 345788899999999874
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-51 Score=489.12 Aligned_cols=598 Identities=18% Similarity=0.229 Sum_probs=414.2
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCC-CCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCC
Q 003363 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKEN-ENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESP 179 (826)
Q Consensus 101 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~-~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~ 179 (826)
.+.+||||++|+|... ..++++++.+.. ...++++... ..+..++|||||++|||+++.
T Consensus 113 ~~~~SpDg~~l~~~~~----------~~i~~~d~~~~~~~~~~~l~~~~-----~~~~~~~~SPDG~~la~~~~~----- 172 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLG----------GELYLYDLKQEGKAAVRQLTHGE-----GFATDAKLSPKGGFVSFIRGR----- 172 (741)
T ss_dssp CCEECTTSSEEEEEET----------TEEEEEESSSCSTTSCCBCCCSS-----SCEEEEEECTTSSEEEEEETT-----
T ss_pred eeEECCCCCEEEEEeC----------CcEEEEECCCCCcceEEEcccCC-----cccccccCCCCCCEEEEEeCC-----
Confidence 4556999999999753 478888764321 0455565543 458899999999999999753
Q ss_pred eEEEEe-cCCceeEEEecCCC-----ccccccCCC--cccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCC
Q 003363 180 IQFELW-SQSQLEKEFHVPQT-----VHGSVYADG--WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCN 251 (826)
Q Consensus 180 ~~~~i~-~~~~~~~~~~~~~~-----~~g~v~~~~--~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (826)
+++.++ .+++..+++..... ...++|.++ ....++|||||++|+|.+.+..... .+.. ....++.
T Consensus 173 ~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~-~~~~-----~~~~p~~- 245 (741)
T 2ecf_A 173 NLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVP-VQKR-----YEVYADR- 245 (741)
T ss_dssp EEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSC-EEEE-----EEECSSC-
T ss_pred cEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCc-eEec-----CCCCCCc-
Confidence 466666 45555554432111 001111100 1267999999999999987653211 0000 0000000
Q ss_pred CCCCcceeecCCCccCCCccCceEEEEEccC-CceEeccCC-CCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeee
Q 003363 252 SWKGQGDWEEDWGETYAGKRQPSLFVININS-GEVQAVKGI-PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKY 329 (826)
Q Consensus 252 ~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~-g~~~~l~~~-~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~ 329 (826)
.-.....|... |+ ......|+++|+++ ++.+.+... .....+..++| |||+. |++.+....
T Consensus 246 ~~~~~~~~~~~-g~---~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~----l~~~~~~~~-------- 308 (741)
T 2ecf_A 246 TDVIEQRYPAA-GD---ANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQH----LSFQRQSRD-------- 308 (741)
T ss_dssp EEEEEEECCBT-TS---CCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTE----EEEEEEETT--------
T ss_pred ccceEeecCCC-CC---CCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCE----EEEEEeccc--------
Confidence 00001111111 11 11235899999999 988877311 23346678999 99999 998874222
Q ss_pred eccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCc-----cccCceecCCCCEEEEEeccCCCCCCCCcccc
Q 003363 330 CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS-----SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 404 (826)
Q Consensus 330 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~-----~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~ 404 (826)
.....|+++|+ .+++.+.+..... ....+.|||||+ +++.+.++ +..
T Consensus 309 --~~~~~i~~~d~-----------------~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~--------g~~ 360 (741)
T 2ecf_A 309 --QKKLDLVEVTL-----------------ASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERT--------GFQ 360 (741)
T ss_dssp --SSEEEEEEEET-----------------TTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTT--------SSC
T ss_pred --CCeEEEEEEEC-----------------CCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCC--------Ccc
Confidence 12347999998 6777666654322 346899999999 66776553 347
Q ss_pred eEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCC-ccccCCCEEEEEEEeCC--eEEEEEEECCCCcEE
Q 003363 405 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN-PWLSDGCTMLLSSIWGS--SQVIISVNVSSGELL 481 (826)
Q Consensus 405 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~-~ws~Dg~~l~~~~~~~~--~~~l~~vdl~tg~~~ 481 (826)
+||.+|..++ .+.++..... +..+ .|+|||+.|++.+..++ ...||.+++.++..+
T Consensus 361 ~l~~~~~~~~-~~~l~~~~~~--------------------v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~ 419 (741)
T 2ecf_A 361 HLYRIDSKGK-AAALTHGNWS--------------------VDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQ 419 (741)
T ss_dssp EEEEECSSSC-EEESCCSSSC--------------------EEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCE
T ss_pred EEEEEcCCCC-eeeeeecceE--------------------EEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCee
Confidence 8999987654 4333322211 1233 59999999988887665 778999998877788
Q ss_pred EecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhhhh-ccccc--ce-eee
Q 003363 482 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKS-LLSSR--QF-SIM 557 (826)
Q Consensus 482 ~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~--~~-~~~ 557 (826)
+|+... .+....|++||+.+++..+++..|+++++.+..++. .+. ++..+..+.. .+... .+ ...
T Consensus 420 ~l~~~~-~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~-~~~---------l~~~~~~~~~~~~~~~~~~~~~~~ 488 (741)
T 2ecf_A 420 RLSKAP-GMHSASFARNASVYVDSWSNNSTPPQIELFRANGEK-IAT---------LVENDLADPKHPYARYREAQRPVE 488 (741)
T ss_dssp ECCCSC-SEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSCE-EEC---------SSCCCSSSTTSTTHHHHTTCCCEE
T ss_pred ecccCC-CceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCCe-EEE---------eccCcccccccchhhhhccCCCcE
Confidence 888743 355678999999999999999999999999864332 111 1111100000 01111 11 111
Q ss_pred eecccCceeeeccCCC-eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-ccch-----HHHHHHHHCCcEEEEECCC
Q 003363 558 KIPVKGVSANLTKGAQ-KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYS-----KSLAFLSSVGYSLLIVNYR 630 (826)
Q Consensus 558 ~~~~~~~~~~~~~~~g-~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~~-----~~~~~la~~G~~Vl~~d~r 630 (826)
. ..+...+| ..++++++.|++++..+++|+||++||++..... ..|. ..++.|+++||.|+++|+|
T Consensus 489 ~-------~~~~~~~g~~~l~~~~~~P~~~~~~~~~p~vv~~hG~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~r 561 (741)
T 2ecf_A 489 F-------GTLTAADGKTPLNYSVIKPAGFDPAKRYPVAVYVYGGPASQTVTDSWPGRGDHLFNQYLAQQGYVVFSLDNR 561 (741)
T ss_dssp E-------EEEECTTSSCEEEEEEECCSSCCTTSCEEEEEECCCSTTCCSCSSCCCCSHHHHHHHHHHHTTCEEEEECCT
T ss_pred E-------EEEEcCCCCEEEEEEEEeCCCCCCCCCcCEEEEEcCCCCcccccccccccchhHHHHHHHhCCCEEEEEecC
Confidence 1 23445577 8999999999876566789999999998876421 2343 5788899999999999999
Q ss_pred CCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh
Q 003363 631 GSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710 (826)
Q Consensus 631 G~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~ 710 (826)
|+++++..+.......++...++|+.++++++.+++.+|.++|+|+|||+||++++.++.++|++|+++|+.+|+.++..
T Consensus 562 G~g~s~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~ 641 (741)
T 2ecf_A 562 GTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYACGVAGAPVTDWGL 641 (741)
T ss_dssp TCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCGGG
T ss_pred CCCCCChhhhHHHhhhcccccHHHHHHHHHHHHhcCCCChhhEEEEEEChHHHHHHHHHHhCCCceEEEEEcCCCcchhh
Confidence 99998888877777777777899999999999998878899999999999999999999999999999999999887643
Q ss_pred hccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCC
Q 003363 711 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV 790 (826)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~ 790 (826)
+.. .+...+ ...+ .+..+.+...+|...+.++++|+|++||++|.++|++++.+++++|+..++
T Consensus 642 ~~~-------~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~ 705 (741)
T 2ecf_A 642 YDS-------HYTERY--------MDLP-ARNDAGYREARVLTHIEGLRSPLLLIHGMADDNVLFTNSTSLMSALQKRGQ 705 (741)
T ss_dssp SBH-------HHHHHH--------HCCT-GGGHHHHHHHCSGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHHHHTTC
T ss_pred hcc-------ccchhh--------cCCc-ccChhhhhhcCHHHHHhhCCCCEEEEccCCCCCCCHHHHHHHHHHHHHCCC
Confidence 210 111111 1112 244566777899999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 791 ETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 791 ~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
+++++++|+++|.+..... .++++.+.+||+++|+
T Consensus 706 ~~~~~~~~~~~H~~~~~~~-~~~~~~i~~fl~~~l~ 740 (741)
T 2ecf_A 706 PFELMTYPGAKHGLSGADA-LHRYRVAEAFLGRCLK 740 (741)
T ss_dssp CCEEEEETTCCSSCCHHHH-HHHHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCCCCCch-hHHHHHHHHHHHHhcC
Confidence 9999999999999875443 6788999999999986
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-51 Score=489.74 Aligned_cols=606 Identities=14% Similarity=0.146 Sum_probs=407.7
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCc---cceeecCCcceecccEEEEeCCCCCeEEEEecCCCC
Q 003363 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENS---VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENE 177 (826)
Q Consensus 101 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~---~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~ 177 (826)
.+.+||||++|+|.......-.......++++++.+ ++. .+++ ..+..++|||||++|||+++.
T Consensus 64 ~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~--g~~~~~~~l~--------~~~~~~~~SPDG~~la~~~~~--- 130 (719)
T 1z68_A 64 NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN--GEFVRGNELP--------RPIQYLCWSPVGSKLAYVYQN--- 130 (719)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT--TEECCSSCCC--------SSBCCEEECSSTTCEEEEETT---
T ss_pred eEEECCCCCeEEEEecCceeEEeecceEEEEEECCC--CccccceecC--------cccccceECCCCCEEEEEECC---
Confidence 456699999999986543211112346788888643 333 3332 247789999999999999754
Q ss_pred CCeEEEEe-cCCceeEEEecCC------CccccccCCCc---ccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCC
Q 003363 178 SPIQFELW-SQSQLEKEFHVPQ------TVHGSVYADGW---FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSD 247 (826)
Q Consensus 178 ~~~~~~i~-~~~~~~~~~~~~~------~~~g~v~~~~~---~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~ 247 (826)
.++... .+++..+++.... +...+||.++. ...++|||||++|||.+.+..... .+....... .
T Consensus 131 --~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~-~~~~~~~~~-~-- 204 (719)
T 1z68_A 131 --NIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIP-VIAYSYYGD-E-- 204 (719)
T ss_dssp --EEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSC-EEEEEECCS-S--
T ss_pred --eEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCc-eEEeeccCC-C--
Confidence 355444 4555555442111 11122222221 148999999999999987643211 111000000 0
Q ss_pred ccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceE---eccC----CCCCCccceEEEeeCCCCCccEEEEEeecC
Q 003363 248 KDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ---AVKG----IPKSLSVGQVVWAPLNEGLHQYLVFVGWSS 320 (826)
Q Consensus 248 ~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~---~l~~----~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~ 320 (826)
...-.....|... |. ......|++||+++++.. .+.. ......+..++|||||+ ++|.....
T Consensus 205 --~~~~~~~~~yp~~-g~---~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-----~~~~~~~~ 273 (719)
T 1z68_A 205 --QYPRTINIPYPKA-GA---KNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-----VCLQWLKR 273 (719)
T ss_dssp --SSCEEEEEECCBT-TS---CCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-----EEEEEEES
T ss_pred --CCccceeecCCCC-CC---CCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe-----EEEEEecc
Confidence 0000011122211 22 113358999999998752 4410 01233567899999975 65553211
Q ss_pred cceeeeeeeeccCCCceEEEE----cccccchhhhhhhhcCCCCCCcceecC-----CCCcccc-----CceecCCCCEE
Q 003363 321 ETRKLGIKYCYNRPCALYAVR----VSLYKSEASELELKESSSEDLPVVNLT-----ESISSAF-----FPRFSPDGKFL 386 (826)
Q Consensus 321 ~~~~~g~~~~~~~~~~l~~~d----~~~~~~~~~~~~~~~~~~~~~~~~~Lt-----~~~~~~~-----~p~~SpDG~~l 386 (826)
. .....|+++| + .+++.+.++ .+.+.+. .|.|||||+.|
T Consensus 274 ~----------~~~~~l~~~d~~~~~-----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 326 (719)
T 1z68_A 274 V----------QNVSVLSICDFREDW-----------------QTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISY 326 (719)
T ss_dssp S----------TTEEEEEEEEECSSS-----------------SSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCE
T ss_pred c----------cCeEEEEEEcccCCC-----------------CCCceEEEEecccccCCceEccccCCccEECCCCCeE
Confidence 1 1123699999 6 666666666 2333344 89999999999
Q ss_pred EEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEe--
Q 003363 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-- 464 (826)
Q Consensus 387 ~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~-- 464 (826)
+|.+... .+..+|+++|+.++..+.++....++ ..+.++ ||+.|+|.+..
T Consensus 327 ~~~~~~~-------~g~~~l~~~~~~~~~~~~lt~~~~~v--------------------~~~~~~-d~~~i~~~~~~~~ 378 (719)
T 1z68_A 327 YKIFSDK-------DGYKHIHYIKDTVENAIQITSGKWEA--------------------INIFRV-TQDSLFYSSNEFE 378 (719)
T ss_dssp EEEEECT-------TSCEEEEEESSCSTTCEECSCSSSCE--------------------EEEEEE-CSSEEEEEESCGG
T ss_pred EEEEEcc-------CCceEEEEEECCCCceEecccCceEE--------------------EEEEEE-eCCEEEEEEecCC
Confidence 9876543 23578999999887655554332211 123445 89999998876
Q ss_pred --CCeEEEEEEECCCC--cEEEecCC----CCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCC
Q 003363 465 --GSSQVIISVNVSSG--ELLRITPA----ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSS 536 (826)
Q Consensus 465 --~~~~~l~~vdl~tg--~~~~lt~~----~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~ 536 (826)
.+..+||.+++++| +.++|+.. ...+....|+++++.+++.++++..| .+++.++.+++ ...
T Consensus 379 ~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p-~~~l~d~~~g~-~~~-------- 448 (719)
T 1z68_A 379 EYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIP-ISTLHDGRTDQ-EIK-------- 448 (719)
T ss_dssp GCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSC-EEEEECSSSCC-EEE--------
T ss_pred CCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCC-eEEEEECCCCC-EEE--------
Confidence 57789999999777 46777742 22345578999999999999888887 57887765432 111
Q ss_pred CCCCCchhhhhccccccee-eeeecccCceeeeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-Cccch-HH
Q 003363 537 PISRCPEKVKSLLSSRQFS-IMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYS-KS 613 (826)
Q Consensus 537 ~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~-~~~~~-~~ 613 (826)
++..|+.+...+....+. ...+ .+...+ .+++++++.|++++..+++|+||++||++.... ...|. ..
T Consensus 449 -~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~l~~~~~~P~~~~~~~~~p~vl~~hG~~~~~~~~~~~~~~~ 519 (719)
T 1z68_A 449 -ILEENKELENALKNIQLPKEEIK-------KLEVDE-ITLWYKMILPPQFDRSKKYPLLIQVYGGPCSQSVRSVFAVNW 519 (719)
T ss_dssp -EEECCHHHHHHTTSBCCCEEEEE-------EEEETT-EEEEEEEEECTTCCSSSCEEEEEEECCCTTBCCCCCCCCCCH
T ss_pred -EeecchhhhhhhccccCCceEEE-------EEecCC-eEEEEEEEeCCCCCCCCCccEEEEECCCCCcCcccccchhhH
Confidence 122344433333333321 1111 333344 889999999998766788999999999887643 22332 23
Q ss_pred HHHH-HHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhC
Q 003363 614 LAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA 692 (826)
Q Consensus 614 ~~~l-a~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~ 692 (826)
...| +++||.|+++|+||+++++..+.......++...++|+.++++++.+++.+|++||+|+|||+||++++.++.++
T Consensus 520 ~~~l~~~~G~~v~~~d~rG~g~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~ 599 (719)
T 1z68_A 520 ISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASG 599 (719)
T ss_dssp HHHHHHTTCCEEEEEECTTBSSSCHHHHGGGTTCTTHHHHHHHHHHHHHHHTTSCEEEEEEEEEEETHHHHHHHHHHTTS
T ss_pred HHHHHhcCCeEEEEEcCCCCCCCchhhHHHHhhccCcccHHHHHHHHHHHHhcCCCCCceEEEEEECHHHHHHHHHHHhC
Confidence 4444 579999999999999999988877777777777899999999999998878999999999999999999999999
Q ss_pred CCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCC-hhhHHHHhhcCcccccCCCCC-cEEEEEeCCC
Q 003363 693 PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS-VEDLTRFHSKSPISHISKVKT-PTIFLLGAQD 770 (826)
Q Consensus 693 p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~~~~~~i~~-PvLii~G~~D 770 (826)
|++|+++|+.+|+.++..+. ..+.+.+ .+.+. .+..+.+...+|...+.++++ |+|++||++|
T Consensus 600 p~~~~~~v~~~~~~~~~~~~-------~~~~~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D 664 (719)
T 1z68_A 600 TGLFKCGIAVAPVSSWEYYA-------SVYTERF--------MGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTAD 664 (719)
T ss_dssp SSCCSEEEEESCCCCTTTSB-------HHHHHHH--------HCCSSTTTTHHHHHHTCSGGGGGGGTTSEEEEEEETTC
T ss_pred CCceEEEEEcCCccChHHhc-------cccchhh--------cCCcccccchhhhhhCCHhHHHhcCCCCcEEEEEeCCC
Confidence 99999999999998764321 1111111 11111 234456777888888999988 8999999999
Q ss_pred CCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 771 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 771 ~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
.+||++++.+++++|++.+++++++++|+++|.+ ..+...+++..+.+||+++|+
T Consensus 665 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~gH~~-~~~~~~~~~~~i~~fl~~~l~ 719 (719)
T 1z68_A 665 DNVHFQNSAQIAKALVNAQVDFQAMWYSDQNHGL-SGLSTNHLYTHMTHFLKQCFS 719 (719)
T ss_dssp SSSCTHHHHHHHHHHHHTTCCCEEEEETTCCTTC-CTHHHHHHHHHHHHHHHHHHC
T ss_pred CCcCHHHHHHHHHHHHHCCCceEEEEECcCCCCC-CcccHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999998 444566889999999999985
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-50 Score=476.06 Aligned_cols=605 Identities=13% Similarity=0.140 Sum_probs=422.2
Q ss_pred HHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecC-Ccce-ecccEEEEe
Q 003363 84 KLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAP-FPVE-MTGASAVVP 161 (826)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~-~~~~-~~~~~~~~~ 161 (826)
+|++++..+-.. .-.+..+|||++++|...... .....||..+. .+++.++|+... +..+ ...+..++|
T Consensus 58 ~l~~~~~~~~~~---~~~~~p~~dG~~~~~~~~~~~----~~~~~l~~~~~--~~~~~~~l~d~~~~a~~~~~~~~~~~~ 128 (695)
T 2bkl_A 58 ALAARFKELFYT---DSVSTPSRRNGRFFYVRTHKD----KEKAILYWRQG--ESGQEKVLLDPNGWSKDGTVSLGTWAV 128 (695)
T ss_dssp HHHHHHHHHHSC---CEECCCEEETTEEEEEEECTT----CSSCEEEEEES--TTSCCEEEECGGGSSSSSCEEEEEEEE
T ss_pred HHHHHHHHhhcc---ccCCCCEEECCEEEEEEEcCC----CeEEEEEEEcC--CCCCcEEEEchHHhccCCCEEEEEEEE
Confidence 355555443332 233444689999999876543 23567888764 344556666432 1100 024778999
Q ss_pred CCCCCeEEEEecCCC-CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCC
Q 003363 162 SPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 239 (826)
Q Consensus 162 SPdG~~la~~~~~~~-~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~ 239 (826)
||||++|||.....+ +..++++++ .+++..+...+... .+..++|||||+.|+|.+.+.....
T Consensus 129 SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~---------~~~~~~wspDg~~l~~~~~d~~~~~------ 193 (695)
T 2bkl_A 129 SWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGG---------KYATPKWTPDSKGFYYEWLPTDPSI------ 193 (695)
T ss_dssp CTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCC---------TTCCCEECTTSSEEEEEECCCCTTS------
T ss_pred CCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcc---------cccceEEecCCCEEEEEEecCCCCC------
Confidence 999999999987653 345676666 45543211111111 1258999999999999987642110
Q ss_pred CCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCce--EeccCCC-CCCccceEEEeeCCCCCccEEEEE
Q 003363 240 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIP-KSLSVGQVVWAPLNEGLHQYLVFV 316 (826)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~--~~l~~~~-~~~~~~~~~wSPDg~~~~~~lvf~ 316 (826)
.........+||++++.+++. +.+...+ .......+.|||||+. |++.
T Consensus 194 -------------------------~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~----l~~~ 244 (695)
T 2bkl_A 194 -------------------------KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY----LFVY 244 (695)
T ss_dssp -------------------------CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC----EEEE
T ss_pred -------------------------ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE----EEEE
Confidence 000011347899999998873 2332122 2235668899999999 9998
Q ss_pred eecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCC
Q 003363 317 GWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVD 396 (826)
Q Consensus 317 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~ 396 (826)
+.... ....||+++. .+++.++|+........+.| +||+ |++.++.+
T Consensus 245 ~~~~~-----------~~~~l~~~~~-----------------~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~--- 291 (695)
T 2bkl_A 245 ILRGW-----------SENDVYWKRP-----------------GEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEG--- 291 (695)
T ss_dssp EEETT-----------TEEEEEEECT-----------------TCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTT---
T ss_pred EeCCC-----------CceEEEEEcC-----------------CCCceEEeecCCCceEEEEe-cCCc-EEEEECCC---
Confidence 75331 1237898886 56778888877666677777 7888 88877653
Q ss_pred CCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECC
Q 003363 397 SGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 476 (826)
Q Consensus 397 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~ 476 (826)
.....|+++|+.+++.... ..+++ ...+ ..+..+.|+ + ..|+++...++..+|+.+++.
T Consensus 292 ----~~~~~l~~~d~~~~~~~~~----~~l~~---~~~~--------~~l~~~~~~-~-~~lv~~~~~dg~~~l~~~~~~ 350 (695)
T 2bkl_A 292 ----APRQRVFEVDPAKPARASW----KEIVP---EDSS--------ASLLSVSIV-G-GHLSLEYLKDATSEVRVATLK 350 (695)
T ss_dssp ----CTTCEEEEEBTTBCSGGGC----EEEEC---CCSS--------CEEEEEEEE-T-TEEEEEEEETTEEEEEEEETT
T ss_pred ----CCCCEEEEEeCCCCCccCC----eEEec---CCCC--------CeEEEEEEE-C-CEEEEEEEECCEEEEEEEeCC
Confidence 2357899999877643110 01111 0000 012245666 4 468888888899999999987
Q ss_pred CCcEEEecCC-CCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhhhhccccccee
Q 003363 477 SGELLRITPA-ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFS 555 (826)
Q Consensus 477 tg~~~~lt~~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 555 (826)
++..+.+... .+.+....++++++.+++..+++.+|.++|+.++.+++ ...+ ... +. .++ ...+.
T Consensus 351 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~-~~~l--~~~--~~-~~~--------~~~~~ 416 (695)
T 2bkl_A 351 GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK-SELW--AKV--DV-PMN--------PEQYQ 416 (695)
T ss_dssp CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC-EEEE--EEC--CC-SSC--------GGGEE
T ss_pred CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc-EEEE--ecC--CC-CCC--------HHHCe
Confidence 6667777644 33334445678899999999999999999999986553 1111 110 00 011 11122
Q ss_pred eeeecccCceeeeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCC
Q 003363 556 IMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGF 635 (826)
Q Consensus 556 ~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~ 635 (826)
...+ .+...+|..++++++.|+++...++.|+||++|||++......|....+.|+++||+|+++|+||++++
T Consensus 417 ~~~~-------~~~~~dg~~i~~~~~~p~~~~~~~~~p~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~ 489 (695)
T 2bkl_A 417 VEQV-------FYASKDGTKVPMFVVHRKDLKRDGNAPTLLYGYGGFNVNMEANFRSSILPWLDAGGVYAVANLRGGGEY 489 (695)
T ss_dssp EEEE-------EEECTTSCEEEEEEEEETTCCCSSCCCEEEECCCCTTCCCCCCCCGGGHHHHHTTCEEEEECCTTSSTT
T ss_pred EEEE-------EEECCCCCEEEEEEEECCCCCCCCCccEEEEECCCCccccCCCcCHHHHHHHhCCCEEEEEecCCCCCc
Confidence 2222 445567889999999999766678899999999998876555676667778899999999999999999
Q ss_pred chhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCC
Q 003363 636 GEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT 715 (826)
Q Consensus 636 G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~ 715 (826)
|..+............++|+.+++++|++++.+|++||+|+|+|+||++++.++.++|++|+++|+.+|+.++..+....
T Consensus 490 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~ 569 (695)
T 2bkl_A 490 GKAWHDAGRLDKKQNVFDDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYHLFG 569 (695)
T ss_dssp CHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGST
T ss_pred CHHHHHhhHhhcCCCcHHHHHHHHHHHHHcCCCCcccEEEEEECHHHHHHHHHHHhCCcceEEEEEcCCccchhhccccC
Confidence 99988766656666778999999999999988999999999999999999999999999999999999999876543322
Q ss_pred CCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCC--CcEEEEEeCCCCCCCcHHHHHHHHHHHh---CCC
Q 003363 716 DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK--TPTIFLLGAQDLRVPVSNGLQYARALRE---KGV 790 (826)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~--~PvLii~G~~D~~vp~~~~~~~~~~l~~---~g~ 790 (826)
.. ......++. ....+..+.+...+|+.++.+++ +|+||+||++|.+||+.++.+++++|+. .|.
T Consensus 570 ~~--~~~~~~~g~--------~~~~~~~~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~ 639 (695)
T 2bkl_A 570 SG--RTWIPEYGT--------AEKPEDFKTLHAYSPYHHVRPDVRYPALLMMAADHDDRVDPMHARKFVAAVQNSPGNPA 639 (695)
T ss_dssp TG--GGGHHHHCC--------TTSHHHHHHHHHHCGGGCCCSSCCCCEEEEEEETTCSSSCTHHHHHHHHHHHTSTTCCS
T ss_pred CC--cchHHHhCC--------CCCHHHHHHHHhcChHhhhhhcCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhhccCCC
Confidence 11 111122222 11234566677889999998876 7999999999999999999999999998 678
Q ss_pred CEEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHHHcC
Q 003363 791 ETKVIVFPNDVHGIERP-QSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 791 ~~~~~~~p~~~H~~~~~-~~~~~~~~~i~~w~~~~l~ 826 (826)
++++++++++||++..+ ....+.+..+++||.++|+
T Consensus 640 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 676 (695)
T 2bkl_A 640 TALLRIEANAGHGGADQVAKAIESSVDLYSFLFQVLD 676 (695)
T ss_dssp CEEEEEETTCBTTBCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEeCCCCcCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999998643 3345778889999999874
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-49 Score=473.62 Aligned_cols=589 Identities=14% Similarity=0.135 Sum_probs=404.3
Q ss_pred EEecCCCCcceEEEEEeechhhcccceeEEEEEEeec-CCCCccceeecC-Cccee-cccEEEEeCCCCCeEEEEecCCC
Q 003363 100 TFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISK-ENENSVTFQWAP-FPVEM-TGASAVVPSPSGSKLLVVRNPEN 176 (826)
Q Consensus 100 ~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~-~~~~~~~lt~~~-~~~~~-~~~~~~~~SPdG~~la~~~~~~~ 176 (826)
..+..+|||++++|...... .....||..+... ++++..+|.+.. +..+. ..+..++|||||++|||.....+
T Consensus 110 ~~~~p~pdG~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G 185 (741)
T 1yr2_A 110 RFGLPQRRGASVFYSWNSGL----MNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGG 185 (741)
T ss_dssp EECCCEEETTEEEEEEECSS----CSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETT
T ss_pred ccCCCEEECCEEEEEEEcCC----CeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCC
Confidence 34445699999999876543 3356788876421 033444443322 11110 24678999999999999987643
Q ss_pred C-CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCC
Q 003363 177 E-SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWK 254 (826)
Q Consensus 177 ~-~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (826)
. ..++++++ .+++..+....... +..++|||| +.|+|.+.+.....
T Consensus 186 ~e~~~i~v~dl~tg~~~~~~~~~~~----------~~~~~wspD-~~l~~~~~~~~~~~--------------------- 233 (741)
T 1yr2_A 186 SDWRTVKFVGVADGKPLADELKWVK----------FSGLAWLGN-DALLYSRFAEPKEG--------------------- 233 (741)
T ss_dssp CSEEEEEEEETTTCCEEEEEEEEEE----------SCCCEESTT-SEEEEEECCCC------------------------
T ss_pred CceEEEEEEECCCCCCCCccCCCce----------eccEEEECC-CEEEEEEecCcccc---------------------
Confidence 2 24566666 55555443211111 158899999 99999976542100
Q ss_pred CcceeecCCCccCCCccCceEEEEEccCCce--EeccCCCC-CCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeec
Q 003363 255 GQGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCY 331 (826)
Q Consensus 255 ~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~--~~l~~~~~-~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~ 331 (826)
++.........||++++.++.. +.+...+. ......+.|||||+. |+|.+.+..
T Consensus 234 ---------~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~----l~~~~~~~~---------- 290 (741)
T 1yr2_A 234 ---------QAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW----VVITSSEGT---------- 290 (741)
T ss_dssp --------------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE----EEEEEECTT----------
T ss_pred ---------cccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE----EEEEEEccC----------
Confidence 0000011246799999988763 23321122 123568899999999 999885331
Q ss_pred cCCCceEEEEcccccchhhhhhhhcCCCCCC--c-ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEE
Q 003363 332 NRPCALYAVRVSLYKSEASELELKESSSEDL--P-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR 408 (826)
Q Consensus 332 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~ 408 (826)
+....||++|+ +++ + .++|+........+ ++|||++|+|.+++. ....+|++
T Consensus 291 ~~~~~l~~~d~-----------------~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~-------~~~~~l~~ 345 (741)
T 1yr2_A 291 DPVNTVHVARV-----------------TNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDG-------APLKKIVR 345 (741)
T ss_dssp CSCCEEEEEEE-----------------ETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTT-------CTTCEEEE
T ss_pred CCcceEEEEEC-----------------CCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCC-------CCCCEEEE
Confidence 12348999998 555 5 77787665555555 469999999998774 23578999
Q ss_pred EeCCCCC--CCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC
Q 003363 409 IDWPTNG--NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA 486 (826)
Q Consensus 409 ~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~ 486 (826)
+|+.++. .+.+...... .+..+.|+ +..|+++...++..+|+.++++++..+.|+..
T Consensus 346 ~d~~~~~~~~~~l~~~~~~-------------------~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~ 404 (741)
T 1yr2_A 346 VDLSGSTPRFDTVVPESKD-------------------NLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLP 404 (741)
T ss_dssp EECSSSSCEEEEEECCCSS-------------------EEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCS
T ss_pred EeCCCCccccEEEecCCCC-------------------eEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCC
Confidence 9987742 1111111100 11234555 45788888889999999999977777777653
Q ss_pred -CCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhhhhcccccceeeeeecccCce
Q 003363 487 -ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVS 565 (826)
Q Consensus 487 -~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 565 (826)
.+.+....++++++.+++..++..+|.++|++++.+++ ...+ +. +...++ ...+....+
T Consensus 405 ~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~-~~~l--~~---~~~~~~--------~~~~~~~~~------ 464 (741)
T 1yr2_A 405 GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK-TTPW--EP---VHLTFD--------PADFRVEQV------ 464 (741)
T ss_dssp SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE-EEEC--SC---CCCSSC--------GGGEEEEEE------
T ss_pred CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc-EEEE--ec---CCCCCC--------hhHCEEEEE------
Confidence 34445556788999999999999999999999986543 1111 10 000111 111222222
Q ss_pred eeeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCC
Q 003363 566 ANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 645 (826)
Q Consensus 566 ~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~ 645 (826)
.+...+|..++++++.|++. .++.|+||++|||++......|......|+++||+|+++|+||++++|..+......
T Consensus 465 -~~~~~dg~~i~~~~~~p~~~--~~~~p~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~ 541 (741)
T 1yr2_A 465 -FYPSKDGTKVPMFIVRRKDA--KGPLPTLLYGYGGFNVALTPWFSAGFMTWIDSGGAFALANLRGGGEYGDAWHDAGRR 541 (741)
T ss_dssp -EEECTTSCEEEEEEEEETTC--CSCCCEEEECCCCTTCCCCCCCCHHHHHHHTTTCEEEEECCTTSSTTHHHHHHTTSG
T ss_pred -EEEcCCCCEEEEEEEecCCC--CCCCcEEEEECCCCCccCCCCcCHHHHHHHHCCcEEEEEecCCCCCCCHHHHHhhhh
Confidence 44556788999999999864 568899999999988766567777778899999999999999999999998876655
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhh
Q 003363 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 725 (826)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~ 725 (826)
.++...++|+.+++++|++++.+|++||+|+|+|+||++++.++.++|++|+++|+.+|+.++..+........| ...
T Consensus 542 ~~~~~~~~D~~~~~~~l~~~~~~~~~ri~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~--~~~ 619 (741)
T 1yr2_A 542 DKKQNVFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMDMLRFDQFTAGRYW--VDD 619 (741)
T ss_dssp GGTHHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTSGGGSTTGGGG--HHH
T ss_pred hcCCCcHHHHHHHHHHHHHcCCCChHHEEEEEECHHHHHHHHHHHhCchhheEEEecCCccccccccCCCCCchh--HHH
Confidence 566667999999999999998899999999999999999999999999999999999999987654322211111 122
Q ss_pred ccCcCCccCCCCCChhhHHHHhhcCcccccCC-CCC-cEEEEEeCCCCCCCcHHHHHHHHHHHh---CCCCEEEEEeCCC
Q 003363 726 YGSKGKDSFTESPSVEDLTRFHSKSPISHISK-VKT-PTIFLLGAQDLRVPVSNGLQYARALRE---KGVETKVIVFPND 800 (826)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~-i~~-PvLii~G~~D~~vp~~~~~~~~~~l~~---~g~~~~~~~~p~~ 800 (826)
++. ....+..+.+...+|+.++.+ +++ |+||+||++|.+||+.++.+++++|+. .|.++++++++++
T Consensus 620 ~g~--------~~~~~~~~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~g~~~~l~~~~~~ 691 (741)
T 1yr2_A 620 YGY--------PEKEADWRVLRRYSPYHNVRSGVDYPAILVTTADTDDRVVPGHSFKYTAALQTAAIGPKPHLIRIETRA 691 (741)
T ss_dssp HCC--------TTSHHHHHHHHTTCGGGCCCTTSCCCEEEEEECSCCSSSCTHHHHHHHHHHHHSCCCSSCEEEEEC---
T ss_pred cCC--------CCCHHHHHHHHHcCchhhhhccCCCCCEEEEeeCCCCCCChhHHHHHHHHHhhhhcCCCCEEEEEeCCC
Confidence 221 112355667788999999987 884 999999999999999999999999999 8899999999999
Q ss_pred CCCCCCCC-CHHHHHHHHHHHHHHHcC
Q 003363 801 VHGIERPQ-SDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 801 ~H~~~~~~-~~~~~~~~i~~w~~~~l~ 826 (826)
||++..+. ...+.+..+.+||.++|+
T Consensus 692 gH~~~~~~~~~~~~~~~~~~fl~~~l~ 718 (741)
T 1yr2_A 692 GHGSGKPIDKQIEETADVQAFLAHFTG 718 (741)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHT
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 99986543 335778899999999874
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=475.84 Aligned_cols=592 Identities=17% Similarity=0.221 Sum_probs=406.6
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCe
Q 003363 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 180 (826)
Q Consensus 101 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 180 (826)
...+||| +.++|..+ ..++++++. +++.++++... ..+..++|||||++|||+.+. .
T Consensus 86 ~~~~spd-~~~~~~~~----------~~i~~~d~~--~~~~~~l~~~~-----~~~~~~~~SpdG~~la~~~~~-----~ 142 (706)
T 2z3z_A 86 RTLDAGR-GLVVLFTQ----------GGLVGFDML--ARKVTYLFDTN-----EETASLDFSPVGDRVAYVRNH-----N 142 (706)
T ss_dssp EEEETTT-TEEEEEET----------TEEEEEETT--TTEEEEEECCT-----TCCTTCEECTTSSEEEEEETT-----E
T ss_pred eEEECCC-CeEEEEEC----------CEEEEEECC--CCceEEccCCc-----ccccCCcCCCCCCEEEEEECC-----e
Confidence 3445899 88888742 467777763 33455555443 346778999999999997543 3
Q ss_pred EEEEe-cC-----CceeEEEecCCCc--ccc-ccCCC--cccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcc
Q 003363 181 QFELW-SQ-----SQLEKEFHVPQTV--HGS-VYADG--WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKD 249 (826)
Q Consensus 181 ~~~i~-~~-----~~~~~~~~~~~~~--~g~-v~~~~--~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (826)
++... .+ ++..+++...... .|. +|.++ ....++|||||++|||.+.+..... .+.............
T Consensus 143 i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~-~~~~~~~~~~~~~~~ 221 (706)
T 2z3z_A 143 LYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVK-PTPIVDYHPLEAESK 221 (706)
T ss_dssp EEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSC-CEEEEECCSSSCEEE
T ss_pred EEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCc-eEEeeccCCCCCceE
Confidence 55555 44 5555544322110 000 11111 1368999999999999985443211 111000000000000
Q ss_pred CCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC-CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeee
Q 003363 250 CNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK 328 (826)
Q Consensus 250 ~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~-~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~ 328 (826)
...|. ..|. ......|++||+++++.+.+.. ......+..++|||||+. |++.+.....
T Consensus 222 ------~~~y~-~~g~---~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~----l~~~~~~~~~------ 281 (706)
T 2z3z_A 222 ------PLYYP-MAGT---PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENI----LYVAEVNRAQ------ 281 (706)
T ss_dssp ------EECCC-BTTS---CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSE----EEEEEECTTS------
T ss_pred ------EeeCC-CCCC---CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCE----EEEEEeCCCC------
Confidence 00111 1111 1134789999999999887731 122345678999999998 9887632211
Q ss_pred eeccCCCceEEEEcccccchhhhhhhhcCCCCCC-cceecCCC--Cc---cccCceecC--CCCEEEEEeccCCCCCCCC
Q 003363 329 YCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTES--IS---SAFFPRFSP--DGKFLVFLSAKSSVDSGAH 400 (826)
Q Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~Lt~~--~~---~~~~p~~Sp--DG~~l~f~s~~~~~~~g~~ 400 (826)
....|+++|+ .++ ..+.+... .. ....+.||| ||+.| +.+.++
T Consensus 282 ----~~~~v~~~d~-----------------~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l-~~~~~~------- 332 (706)
T 2z3z_A 282 ----NECKVNAYDA-----------------ETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFI-WQSRRD------- 332 (706)
T ss_dssp ----CEEEEEEEET-----------------TTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEE-EEECTT-------
T ss_pred ----CeeEEEEEEC-----------------CCCceeeEEEEccCCCeECccCCceeecCCCCEEE-EEEccC-------
Confidence 2237999998 666 45544322 11 135689999 99854 555443
Q ss_pred cccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCC-CccccCCCEEEEEEEeCC--eEEEEEEECCC
Q 003363 401 SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS-NPWLSDGCTMLLSSIWGS--SQVIISVNVSS 477 (826)
Q Consensus 401 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~-~~ws~Dg~~l~~~~~~~~--~~~l~~vdl~t 477 (826)
+..+||.+|..++....++..... +.. +.|+|||+.|++.+...+ ...||.+|+.+
T Consensus 333 -g~~~l~~~~~~~~~~~~l~~~~~~--------------------v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 391 (706)
T 2z3z_A 333 -GWNHLYLYDTTGRLIRQVTKGEWE--------------------VTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG 391 (706)
T ss_dssp -SSCEEEEEETTSCEEEECCCSSSC--------------------EEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred -CccEEEEEECCCCEEEecCCCCeE--------------------EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence 347899998655433333322111 112 579999999998876654 57999999999
Q ss_pred CcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhhhhcccccceeee
Q 003363 478 GELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIM 557 (826)
Q Consensus 478 g~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 557 (826)
++.++++.... +....|++||+.+++..++...|+++++.++.+++ ..+ ++..+. +....+
T Consensus 392 ~~~~~l~~~~~-~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~--~~~--------~~~~~~-----~~~~~~--- 452 (706)
T 2z3z_A 392 GKTKDLTPESG-MHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS--HTL--------LEAKNP-----DTGYAM--- 452 (706)
T ss_dssp CCCEESCCSSS-EEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE--EEE--------EECC-----------CC---
T ss_pred CCceeccCCCc-eEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe--Eee--------ccccch-----hhhcCC---
Confidence 99888885443 55678999999999999999999999999976442 111 111110 111111
Q ss_pred eecccCceeeeccCCC-eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-ccchH----HHHHHHHCCcEEEEECCCC
Q 003363 558 KIPVKGVSANLTKGAQ-KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSK----SLAFLSSVGYSLLIVNYRG 631 (826)
Q Consensus 558 ~~~~~~~~~~~~~~~g-~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~~~----~~~~la~~G~~Vl~~d~rG 631 (826)
+.. ....+...+| ..++++++.|++++..+++|+||++|||++.... ..|.. .++.|+++||.|+++|+||
T Consensus 453 --~~~-~~~~~~~~~g~~~~~~~~~~P~~~~~~~~~p~iv~~HGg~~~~~~~~~~~~~~~~~~~~la~~G~~v~~~d~rG 529 (706)
T 2z3z_A 453 --PEI-RTGTIMAADGQTPLYYKLTMPLHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRG 529 (706)
T ss_dssp --CCE-EEEEEECTTSSSEEEEEEECCTTCCTTSCEEEEEECCCCTTCCCCCSCC----CCHHHHHHHTTCEEEEECCTT
T ss_pred --CCc-EEEEEEcCCCCEEEEEEEEeCCCCCCCCCccEEEEecCCCCceeeccccccCchHHHHHHHhCCcEEEEEecCC
Confidence 100 0123445567 7899999999987667789999999998876532 34544 5788999999999999999
Q ss_pred CCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh
Q 003363 632 SLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711 (826)
Q Consensus 632 ~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~ 711 (826)
+++++..+.......++...++|+.++++++.+++.+|.+|++|+|||+||++++.++.++|++|+++|+.+|+.++..+
T Consensus 530 ~g~s~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~ 609 (706)
T 2z3z_A 530 SANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRY 609 (706)
T ss_dssp CSSSCHHHHHTTTTCTTHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCCCCGGGS
T ss_pred CcccchhHHHHHhhccCCccHHHHHHHHHHHHhCCCCCchheEEEEEChHHHHHHHHHHhCCCcEEEEEEcCCccchHHH
Confidence 99998888777777777778999999999999888889999999999999999999999999999999999998876432
Q ss_pred ccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCC
Q 003363 712 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVE 791 (826)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~ 791 (826)
. ..+.+.+ ...+ .+..+.+...+|...+.++++|+|++||++|.+||++++++++++|++.+++
T Consensus 610 ~-------~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~ 673 (706)
T 2z3z_A 610 A-------IMYGERY--------FDAP-QENPEGYDAANLLKRAGDLKGRLMLIHGAIDPVVVWQHSLLFLDACVKARTY 673 (706)
T ss_dssp B-------HHHHHHH--------HCCT-TTCHHHHHHHCGGGGGGGCCSEEEEEEETTCSSSCTHHHHHHHHHHHHHTCC
T ss_pred H-------hhhhhhh--------cCCc-ccChhhhhhCCHhHhHHhCCCCEEEEeeCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 1 0111111 1112 2334566778898999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 792 TKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 792 ~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
++++++|+++|.+... ...++++.+.+||+++|
T Consensus 674 ~~~~~~~~~gH~~~~~-~~~~~~~~i~~fl~~~l 706 (706)
T 2z3z_A 674 PDYYVYPSHEHNVMGP-DRVHLYETITRYFTDHL 706 (706)
T ss_dssp CEEEEETTCCSSCCTT-HHHHHHHHHHHHHHHHC
T ss_pred eEEEEeCCCCCCCCcc-cHHHHHHHHHHHHHHhC
Confidence 9999999999998765 55688999999999986
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-49 Score=464.55 Aligned_cols=603 Identities=15% Similarity=0.131 Sum_probs=412.6
Q ss_pred HHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcce-ecccEEEEe
Q 003363 83 SKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVE-MTGASAVVP 161 (826)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~-~~~~~~~~~ 161 (826)
.+|+++++++-.. .-.+..+.+|.+..|...... .....+|.... .+++.+.|....+..+ ...+..++|
T Consensus 66 ~~l~~~~~~~~~~---~~~~~p~~~g~~~y~~~~~~~----~~~~~~~r~~~--~~~~~vllD~n~la~~~~~~l~~~~~ 136 (693)
T 3iuj_A 66 AAIKEKLAASWNY---AKEGAPFREGRYHYFFKNDGL----QNQNVLWRQQE--GKPAEVFLDPNTLSPDGTTALDQLSF 136 (693)
T ss_dssp HHHHHHHHHHSCC---CEECCCEEETTEEEEEEECSS----CSSCEEEEECT--TSCCEEEECGGGGSTTSCCEEEEEEE
T ss_pred HHHHHHHHHhhcc---ccCCCCEEECCEEEEEEEcCC----CceeEEEEeCC--CCCcEEEEehhhccCCCcEEEEEEEE
Confidence 3455666543322 223333567777777654332 22334444321 2222222211111110 023667899
Q ss_pred CCCCCeEEEEecCCCC-CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCC
Q 003363 162 SPSGSKLLVVRNPENE-SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 239 (826)
Q Consensus 162 SPdG~~la~~~~~~~~-~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~ 239 (826)
||||++|||..+..+. ...+++++ .+++..+.+ ..... +..++|| ||+.|+|.+.+....
T Consensus 137 SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k---------~~~~~Ws-Dg~~l~y~~~~~~~~------- 198 (693)
T 3iuj_A 137 SRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVK---------FSGISWL-GNEGFFYSSYDKPDG------- 198 (693)
T ss_dssp CTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEE---------SCCCEEE-TTTEEEEEESSCCC--------
T ss_pred CCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCce---------eccEEEe-CCCEEEEEEecCccc-------
Confidence 9999999998876532 34566666 556544432 11110 1688999 999999998764210
Q ss_pred CCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCce--EeccCCCC--CCccceEEEeeCCCCCccEEEE
Q 003363 240 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPK--SLSVGQVVWAPLNEGLHQYLVF 315 (826)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~--~~l~~~~~--~~~~~~~~wSPDg~~~~~~lvf 315 (826)
++.........||++++.++.. +.+...+. ......+.|||||+. |++
T Consensus 199 ------------------------~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~----l~~ 250 (693)
T 3iuj_A 199 ------------------------SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRF----LLI 250 (693)
T ss_dssp ------------------------------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCE----EEE
T ss_pred ------------------------ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCE----EEE
Confidence 0000011346899999987653 33421121 223457899999999 999
Q ss_pred EeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCC--cceecCCCCccccCceecCCCCEEEEEeccC
Q 003363 316 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (826)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~ 393 (826)
...... ..+.||++|+ +++ +.++|+........+ |++||++|+|.++++
T Consensus 251 ~~~~~~-----------~~~~i~~~d~-----------------~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~ 301 (693)
T 3iuj_A 251 SAANST-----------SGNRLYVKDL-----------------SQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRD 301 (693)
T ss_dssp EEESSS-----------SCCEEEEEET-----------------TSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTT
T ss_pred EEccCC-----------CCcEEEEEEC-----------------CCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCC
Confidence 874322 2248999998 433 677887765555555 899999999998875
Q ss_pred CCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003363 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (826)
Q Consensus 394 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~v 473 (826)
....+|+.+|+.+++.... ..+++ .. . .. . .|+++|+.|++....++...|+.+
T Consensus 302 -------~~~~~l~~~d~~~~~~~~~----~~l~~---~~--~--------~~-~-~~s~~g~~lv~~~~~~g~~~l~~~ 355 (693)
T 3iuj_A 302 -------APNRRLVTVDAANPGPAHW----RDLIP---ER--Q--------QV-L-TVHSGSGYLFAEYMVDATARVEQF 355 (693)
T ss_dssp -------CTTCEEEEEETTSCCGGGC----EEEEC---CC--S--------SC-E-EEEEETTEEEEEEEETTEEEEEEE
T ss_pred -------CCCCEEEEEeCCCCCcccc----EEEec---CC--C--------CE-E-EEEEECCEEEEEEEECCeeEEEEE
Confidence 2357899999987654111 11111 10 0 11 1 799999999999988999999999
Q ss_pred ECCCCcEEEecCCC-CCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhhhhccccc
Q 003363 474 NVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSR 552 (826)
Q Consensus 474 dl~tg~~~~lt~~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 552 (826)
|++++..+.|.... +.+....++++++.+++..+++.+|++++.+++.+++ ...+ .. .+.. +...
T Consensus 356 d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~-~~~l--~~-------~~~~----~~~~ 421 (693)
T 3iuj_A 356 DYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA-ISLY--RA-------SAAP----FKPE 421 (693)
T ss_dssp CTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC-EEEE--EC-------CCSS----CCGG
T ss_pred ECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe-EEEE--Ee-------CCCC----cChh
Confidence 99988888886543 3333345567899999999999999999999986543 1111 11 1100 1111
Q ss_pred ceeeeeecccCceeeeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCC
Q 003363 553 QFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS 632 (826)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~ 632 (826)
.+....+ .+...+|..++++++.|++....++.|+||++|||++......|...+..|+++||+|+++|+||+
T Consensus 422 ~~~~~~~-------~~~~~dg~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~ 494 (693)
T 3iuj_A 422 DYVSEQR-------FYQSKDGTRVPLIISYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGG 494 (693)
T ss_dssp GEEEEEE-------EEECTTSCEEEEEEEEESSCCCSSCCCEEEECCCCTTCCCCCCCCHHHHHHHHTTCEEEEECCTTS
T ss_pred hCeeEEE-------EEecCCCcEEEEEEEecCCCCCCCCccEEEEECCCCCcCCCCccCHHHHHHHHCCCEEEEEeCCCC
Confidence 2222222 445567889999999999876678899999999998876667788888899999999999999999
Q ss_pred CCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhc
Q 003363 633 LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712 (826)
Q Consensus 633 ~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~ 712 (826)
+++|..|........+...++|+.+++++|++++.+|++||+|+|+|+||++++.++.++|++|+++|+.+|+.++..+.
T Consensus 495 g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~~~~~p~~~~a~v~~~~~~d~~~~~ 574 (693)
T 3iuj_A 495 GEYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVLDMLRYH 574 (693)
T ss_dssp STTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCCTTTGG
T ss_pred CccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHhhCccceeEEEecCCcchhhhhc
Confidence 99999998877777777789999999999999998999999999999999999999999999999999999999876543
Q ss_pred cCCCCCCchhhhhccCcCCccCCCCCChhh-HHHHhhcCcccccCC-CCCc-EEEEEeCCCCCCCcHHHHHHHHHHHhC-
Q 003363 713 GTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHSKSPISHISK-VKTP-TIFLLGAQDLRVPVSNGLQYARALREK- 788 (826)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sp~~~~~~-i~~P-vLii~G~~D~~vp~~~~~~~~~~l~~~- 788 (826)
.......| ...++. ....+. .+.+...+|+.++.+ +++| +||+||++|.+||+.++.+++++|+..
T Consensus 575 ~~~~~~~~--~~~~g~--------p~~~~~~~~~~~~~sp~~~~~~~~~~Pp~Li~~G~~D~~v~~~~~~~~~~~l~~~~ 644 (693)
T 3iuj_A 575 TFTAGTGW--AYDYGT--------SADSEAMFDYLKGYSPLHNVRPGVSYPSTMVTTADHDDRVVPAHSFKFAATLQADN 644 (693)
T ss_dssp GSGGGGGC--HHHHCC--------TTSCHHHHHHHHHHCHHHHCCTTCCCCEEEEEEESSCSSSCTHHHHHHHHHHHHHC
T ss_pred cCCCchhH--HHHcCC--------ccCHHHHHHHHHhcCHHHhhcccCCCCceeEEecCCCCCCChhHHHHHHHHHHhhC
Confidence 22111112 112222 112233 556778899999999 8987 999999999999999999999999988
Q ss_pred --CCCEEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHHHcC
Q 003363 789 --GVETKVIVFPNDVHGIERP-QSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 789 --g~~~~~~~~p~~~H~~~~~-~~~~~~~~~i~~w~~~~l~ 826 (826)
|+++++++++++||++..+ ....+.+..+.+||.++|+
T Consensus 645 ~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 685 (693)
T 3iuj_A 645 AGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTLYEMG 685 (693)
T ss_dssp CSSSCEEEEEEC-------CHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHcC
Confidence 5899999999999998764 4556778899999999875
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-47 Score=453.42 Aligned_cols=598 Identities=14% Similarity=0.111 Sum_probs=405.7
Q ss_pred HHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeec-CCC---CccceeecCCcc--eeccc
Q 003363 83 SKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISK-ENE---NSVTFQWAPFPV--EMTGA 156 (826)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~-~~~---~~~~lt~~~~~~--~~~~~ 156 (826)
.+|+++++..-.... .....++|.++.|...... +....++...... .++ +.+.|....+.. +....
T Consensus 104 ~~l~~e~~~~~~~~~---~~~p~~~g~~~yy~~~~~g----~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~~ 176 (751)
T 2xe4_A 104 DDIYAEHISHINEDD---MSAPYVYGKYRYYTREVKG----KPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDV 176 (751)
T ss_dssp HHHHHHHHHTSCSSE---ECCCEEETTEEEEEEECTT----CCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCEE
T ss_pred HHHHHHHHHhccccc---CCCCeEECCEEEEEEECCC----CceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEEE
Confidence 446666665433332 2222368999989865332 2234455544210 222 223332221110 00136
Q ss_pred EEEEeC-CCCCeEEEEecCCC-CCCeEEEEe-cCC-ceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 157 SAVVPS-PSGSKLLVVRNPEN-ESPIQFELW-SQS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 157 ~~~~~S-PdG~~la~~~~~~~-~~~~~~~i~-~~~-~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
..++|| |||++|||+.+..+ +..++++++ .++ +. + .....+ .+.+++|||||+.|+|++.+...
T Consensus 177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l---~~~~~~------~~~~~~WspDg~~l~y~~~d~~~- 244 (751)
T 2xe4_A 177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT--I---ADKVSG------TNGEIVWGPDHTSLFYVTKDETL- 244 (751)
T ss_dssp EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC--C---CCCEEE------ECSCCEECSSTTEEEEEEECTTC-
T ss_pred eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe--C---CccccC------ceeeEEEecCCCEEEEEEECCCC-
Confidence 789999 99999999987653 234577777 444 31 1 111100 12689999999999999764310
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceE--eccCCCCCCccceEEEeeCCCCCc
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ--AVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~--~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
...+||++++.+++.+ .+...+.......+.|||||+.
T Consensus 245 --------------------------------------~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~-- 284 (751)
T 2xe4_A 245 --------------------------------------RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNT-- 284 (751)
T ss_dssp --------------------------------------CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSE--
T ss_pred --------------------------------------CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCE--
Confidence 2258999999887532 3311122223457899999999
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCC--cc--eecCCCCccccCceecCC---C
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PV--VNLTESISSAFFPRFSPD---G 383 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~--~~Lt~~~~~~~~p~~SpD---G 383 (826)
|+|.++.. ....||++|+ +++ +. +.|+... ..+.|++| |
T Consensus 285 --l~~~~~~~------------~~~~l~~~d~-----------------~~~~~~~~~~~l~~~~---~~~~~s~~~~~g 330 (751)
T 2xe4_A 285 --LCIGSQSP------------ETAEVHLLDL-----------------RKGNAHNTLEIVRPRE---KGVRYDVQMHGT 330 (751)
T ss_dssp --EEEEEECS------------SCEEEEEEES-----------------SSCTTCCCEEESSCCC---TTCCEEEEEETT
T ss_pred --EEEEecCC------------CCceEEEEEC-----------------CCCCCCceeEEeecCC---CCceEEEeeeeC
Confidence 99988532 2348999998 433 45 6676543 35667777 9
Q ss_pred CEEEEEeccCCCCCCCCcccceEEEEeCCCC-CCCC-cccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEE
Q 003363 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTN-GNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 461 (826)
Q Consensus 384 ~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~-~~~~-~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~ 461 (826)
++|+|.++++ + ....+|+++|+.+. ..+. +.....+ ..+. .|+.+++.|++.
T Consensus 331 ~~l~~~t~~~----~--a~~~~L~~~d~~~~~~~~~~li~~~~~------------------~~l~--~~~~~~~~lv~~ 384 (751)
T 2xe4_A 331 SHLVILTNEG----G--AVNHKLLIAPRGQPSDWSHVLVDHSED------------------VFME--SIAVRSNYLVVA 384 (751)
T ss_dssp TEEEEEECTT----T--CTTCEEEEEETTSTTCCCCEEECCCSS------------------EEEE--EEEECSSEEEEE
T ss_pred CEEEEEeCCC----C--CCCcEEEEEcCCCcccceeeEECCCCC------------------cEEE--EEEEECCEEEEE
Confidence 9999999874 1 23578999998752 2222 2111100 0011 244457789999
Q ss_pred EEeCCeEEEEEEEC-------CCCc-EEEecCCCCCeeeEEE------eecCCEEEEEEeCCCCCCeEEEEeecccCCCc
Q 003363 462 SIWGSSQVIISVNV-------SSGE-LLRITPAESNFSWSLL------TLDGDNIIAVSSSPVDVPQVKYGYFVDKANKG 527 (826)
Q Consensus 462 ~~~~~~~~l~~vdl-------~tg~-~~~lt~~~~~~~~~~~------s~dg~~l~~~~s~~~~p~~l~~~~~~~~~~~~ 527 (826)
...++...|+.+|+ ++++ .++|+....... ..+ +.+++.+++..+++.+|+++|.+++.+++ ..
T Consensus 385 ~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~-~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~-~~ 462 (751)
T 2xe4_A 385 GRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFT-VHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS-RT 462 (751)
T ss_dssp EEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCE-EEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC-EE
T ss_pred EEeCCEEEEEEEecccccccccCCccceEECCCCceeE-EEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc-EE
Confidence 99999999999996 6777 788864433222 234 45788999999999999999999976543 11
Q ss_pred eeeeeccCCCCCCCchhhhhcccccceeeeeecccCceeeeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC
Q 003363 528 TWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL 607 (826)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~ 607 (826)
.+ ... +.. ..+....+....+ .+...+|..++++++.|++.+..+++|+||++|||++....
T Consensus 463 ~l--~~~--~~~-------~~~~~~~~~~~~~-------~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~HGg~~~~~~ 524 (751)
T 2xe4_A 463 AV--KVR--EVG-------GGFDAANYKVERR-------FATAPDQTKIPLSVVYHKDLDMSQPQPCMLYGYGSYGLSMD 524 (751)
T ss_dssp EE--EEC--CCC-------TTCCGGGEEEEEE-------EEECTTCCEEEEEEEEETTSCTTSCCCEEEECCCCTTCCCC
T ss_pred EE--ecc--ccc-------cCCCccceEEEEE-------EEECCCCcEEEEEEEcCCCCCCCCCccEEEEECCCCCcCCC
Confidence 11 110 010 0011112222222 44556788999999999876566789999999999887655
Q ss_pred ccchHHHHHHHHCCcEEEEECCCCCCCCchhhhh-cCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHH
Q 003363 608 SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ-SLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT 686 (826)
Q Consensus 608 ~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~-~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~ 686 (826)
..|....+.|+++||+|+++|+||++++|..|.. .....++...++|+.+++++|++++.+|++||+|+|+|+||++++
T Consensus 525 ~~~~~~~~~l~~~G~~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~ 604 (751)
T 2xe4_A 525 PQFSIQHLPYCDRGMIFAIAHIRGGSELGRAWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMG 604 (751)
T ss_dssp CCCCGGGHHHHTTTCEEEEECCTTSCTTCTHHHHTTSSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHH
T ss_pred CcchHHHHHHHhCCcEEEEEeeCCCCCcCcchhhccccccccCccHHHHHHHHHHHHHCCCCCcccEEEEEECHHHHHHH
Confidence 5676677889999999999999999999999987 666666677899999999999999889999999999999999999
Q ss_pred HHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCc-EEEE
Q 003363 687 HLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTP-TIFL 765 (826)
Q Consensus 687 ~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P-vLii 765 (826)
.++.++|++|+++|+.+|+.++..+......+.+. ..+ ..+......+..+.+...+|+.++.++++| +||+
T Consensus 605 ~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~--~~~-----~~~g~p~~~~~~~~~~~~sp~~~~~~~~~Pp~Lii 677 (751)
T 2xe4_A 605 AVLNMRPDLFKVALAGVPFVDVMTTMCDPSIPLTT--GEW-----EEWGNPNEYKYYDYMLSYSPMDNVRAQEYPNIMVQ 677 (751)
T ss_dssp HHHHHCGGGCSEEEEESCCCCHHHHHTCTTSTTHH--HHT-----TTTCCTTSHHHHHHHHHHCTGGGCCSSCCCEEEEE
T ss_pred HHHHhCchheeEEEEeCCcchHHhhhcccCcccch--hhH-----HHcCCCCCHHHHHHHHhcChhhhhccCCCCceeEE
Confidence 99999999999999999999987654332222111 011 011111123444567788999999999997 9999
Q ss_pred EeCCCCCCCcHHHHHHHHHHHhCC---CCEEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHHHcC
Q 003363 766 LGAQDLRVPVSNGLQYARALREKG---VETKVIVFPNDVHGIERPQ-SDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 766 ~G~~D~~vp~~~~~~~~~~l~~~g---~~~~~~~~p~~~H~~~~~~-~~~~~~~~i~~w~~~~l~ 826 (826)
||++|.+||+.++.+++++|+..+ ..+.+.++++++|++.... ...+.+..+.+||.++|+
T Consensus 678 ~G~~D~~vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~Fl~~~l~ 742 (751)
T 2xe4_A 678 CGLHDPRVAYWEPAKWVSKLRECKTDNNEILLNIDMESGHFSAKDRYKFWKESAIQQAFVCKHLK 742 (751)
T ss_dssp EETTCSSSCTHHHHHHHHHHHHHCCSCCCEEEEEETTCCSSCCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred eeCCCCCCCHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCcCChhHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999885 4566777899999987543 344566789999999874
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-38 Score=366.97 Aligned_cols=480 Identities=14% Similarity=0.139 Sum_probs=328.7
Q ss_pred ceEEEEEccCCc--eEec-cCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchh
Q 003363 273 PSLFVININSGE--VQAV-KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 349 (826)
Q Consensus 273 ~~l~v~d~~~g~--~~~l-~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 349 (826)
..+|.+.+.+.. -+.+ .+...+.. -.+.-++|++.....+ +.+...+ ...+.+|.++++.
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~-~i~~~~~----------~~~~~~~~~~~~~----- 278 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIY-VSAGKLLSDTISSSLI-FISANKD----------FYNYDNYILDTKY----- 278 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCE-EEEEESSCTTTCSSEE-EEEEESS----------SSCEEEEEEECSS-----
T ss_pred CEEEEEECCCChHHCeEEeccCCCceE-EEEEEecCCCceEEEE-EEEEecc----------cCceeEEEEcCCC-----
Confidence 568888876643 2222 12222332 2345677877510012 3321111 1234789888621
Q ss_pred hhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeee
Q 003363 350 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (826)
Q Consensus 350 ~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 429 (826)
..++..+|..... ..+..+.+|+.++++..+... .|......+|..+|+++...-.. .......+
T Consensus 279 ----------~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~ 343 (711)
T 4hvt_A 279 ----------KNLKLQKINMPSD--ATLQGSFKEYVFWLLRSDWKF-KSHNIKAGSLVALHFTDLLKTES--DKTSLKIL 343 (711)
T ss_dssp ----------SSCEEEECCSCTT--CEEEEEETTEEEEECSSCEEE-TTEEECTTCEEEEEGGGGGSCGG--GCTTCEEE
T ss_pred ----------CCCcceEeecCCc--ceEeeeECCEEEEEECccccc-ccccCCCCeEEEEECCccccccc--ccccceEE
Confidence 2355566643332 234567777655544332110 01112346799999876321000 00001111
Q ss_pred eeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc--EEE-ecCC-CCCeeeEEEeecCCEEEEE
Q 003363 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE--LLR-ITPA-ESNFSWSLLTLDGDNIIAV 505 (826)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~--~~~-lt~~-~~~~~~~~~s~dg~~l~~~ 505 (826)
+... ....+..+.|..| .|++....++...|+.+|+.+|+ .+. +... .+.+.....+++++.+++.
T Consensus 344 ~~~~--------~~~~l~~~~~~~~--~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~ 413 (711)
T 4hvt_A 344 FTPT--------ANEVFNFISTTKD--RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALIT 413 (711)
T ss_dssp ECCC--------TTEEEEEEEECSS--CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEE
T ss_pred ECCC--------CCCeEEEEEEECC--EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEE
Confidence 1000 0112335667765 58888888999999999987774 445 4333 3444444556788899999
Q ss_pred EeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhhhhcccccceeeeeecccCceeeeccCCCeeEEEEEEecCC
Q 003363 506 SSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSH 585 (826)
Q Consensus 506 ~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~ 585 (826)
.+++.+|++++.+++. ++ ... +...+. .+....+....+ .+...+|.+++++++.|++
T Consensus 414 ~ss~~~P~~~~~~d~~-~~-~~~---------l~~~~~----~~~~~~~~~e~v-------~~~s~DG~~i~~~l~~P~~ 471 (711)
T 4hvt_A 414 IENSIVPPTIYLWVKT-HE-LKI---------IRKALY----SFDSENYVLEQK-------EATSFDGVKIPYFLVYKKG 471 (711)
T ss_dssp EECSSSCCEEEEECTT-SC-EEE---------EECCSS----CCCGGGEEEEEE-------EEECTTSCEEEEEEEEETT
T ss_pred EecCCCCCEEEEEeCC-Cc-EEE---------EecCCc----ccCcccCeeEEE-------EEECCCCeEEEEEEEecCC
Confidence 9999999999999875 32 111 111111 111222222222 4556688999999999998
Q ss_pred CCCCCCCcEEEEEcCCCCCCCCccchHHH-HHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHH
Q 003363 586 KKDCSCDPLIVVLHGGPHSVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 664 (826)
Q Consensus 586 ~~~~~~~P~vv~~HGg~~~~~~~~~~~~~-~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 664 (826)
.+..+++|+||++|||++......|.... +.|+++||+|+++|+||++++|..+.......++...++|+.+++++|++
T Consensus 472 ~~~~~~~P~vl~~HGG~~~~~~~~~~~~~~q~la~~Gy~Vv~~d~RGsg~~G~~~~~~~~~~~~~~~~~D~~aav~~L~~ 551 (711)
T 4hvt_A 472 IKFDGKNPTLLEAYGGFQVINAPYFSRIKNEVWVKNAGVSVLANIRGGGEFGPEWHKSAQGIKRQTAFNDFFAVSEELIK 551 (711)
T ss_dssp CCCSSCCCEEEECCCCTTCCCCCCCCHHHHHHTGGGTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccEEEEECCCCCCCCCCcccHHHHHHHHHCCCEEEEEeCCCCCCcchhHHHhhhhccCcCcHHHHHHHHHHHHH
Confidence 76678999999999998877666776655 58899999999999999999999999888888888889999999999999
Q ss_pred cCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHH
Q 003363 665 MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLT 744 (826)
Q Consensus 665 ~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (826)
++.+|++||+|+|+|+||+++++++.++|++|+++|+.+|++++..+........|. ..++. ....+..+
T Consensus 552 ~~~~d~~rI~i~G~S~GG~la~~~a~~~pd~f~a~V~~~pv~D~~~~~~~~~~~~~~--~~~G~--------p~~~~~~~ 621 (711)
T 4hvt_A 552 QNITSPEYLGIKGGSNGGLLVSVAMTQRPELFGAVACEVPILDMIRYKEFGAGHSWV--TEYGD--------PEIPNDLL 621 (711)
T ss_dssp TTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGH--HHHCC--------TTSHHHHH
T ss_pred cCCCCcccEEEEeECHHHHHHHHHHHhCcCceEEEEEeCCccchhhhhccccchHHH--HHhCC--------CcCHHHHH
Confidence 999999999999999999999999999999999999999999987654432222221 22222 12235567
Q ss_pred HHhhcCcccccCCCCC--cEEEEEeCCCCCCCcHHHHHHHHHH-HhCCCCEEEEEeCCCCCCCCCCC-CHHHHHHHHHHH
Q 003363 745 RFHSKSPISHISKVKT--PTIFLLGAQDLRVPVSNGLQYARAL-REKGVETKVIVFPNDVHGIERPQ-SDFESFLNIGLW 820 (826)
Q Consensus 745 ~~~~~sp~~~~~~i~~--PvLii~G~~D~~vp~~~~~~~~~~l-~~~g~~~~~~~~p~~~H~~~~~~-~~~~~~~~i~~w 820 (826)
.+...+|+.++.++++ |+||+||++|.+||+.++.+++++| +..|++++++++|+++|++.... ...+.+..+.+|
T Consensus 622 ~l~~~SP~~~v~~i~~~pPvLii~G~~D~~Vp~~~s~~~~~aL~~~~g~pv~l~~~p~~gHg~~~~~~~~~~~~~~i~~F 701 (711)
T 4hvt_A 622 HIKKYAPLENLSLTQKYPTVLITDSVLDQRVHPWHGRIFEYVLAQNPNTKTYFLESKDSGHGSGSDLKESANYFINLYTF 701 (711)
T ss_dssp HHHHHCGGGSCCTTSCCCEEEEEEETTCCSSCTHHHHHHHHHHTTCTTCCEEEEEESSCCSSSCSSHHHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHhhcCCCCCEEEEecCCCCcCChHHHHHHHHHHHHHcCCCEEEEEECCCCCcCcCCcchHHHHHHHHHHH
Confidence 7888999999999886 9999999999999999999999999 99999999999999999986543 344667788999
Q ss_pred HHHHcC
Q 003363 821 FKKYCK 826 (826)
Q Consensus 821 ~~~~l~ 826 (826)
|.++|+
T Consensus 702 L~~~Lg 707 (711)
T 4hvt_A 702 FANALK 707 (711)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 999875
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A | Back alignment and structure |
|---|
Probab=99.92 E-value=9.8e-24 Score=218.07 Aligned_cols=209 Identities=17% Similarity=0.176 Sum_probs=145.6
Q ss_pred ccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
.+.||.+|.|+++.|. ..++.|+||++||++.......+...++.|+++||+|+++|+||++.++............
T Consensus 36 ~~~dG~~i~g~l~~P~---~~~~~p~Vl~~HG~g~~~~~~~~~~~a~~la~~Gy~Vl~~D~rG~G~s~~~~~~~~~~~~~ 112 (259)
T 4ao6_A 36 LEVDGRTVPGVYWSPA---EGSSDRLVLLGHGGTTHKKVEYIEQVAKLLVGRGISAMAIDGPGHGERASVQAGREPTDVV 112 (259)
T ss_dssp EEETTEEEEEEEEEES---SSCCSEEEEEEC--------CHHHHHHHHHHHTTEEEEEECCCC-------------CCGG
T ss_pred EeeCCeEEEEEEEeCC---CCCCCCEEEEeCCCcccccchHHHHHHHHHHHCCCeEEeeccCCCCCCCCcccccccchhh
Confidence 4568999999999998 4567899999999887654556777889999999999999999976654332211111111
Q ss_pred ---------------cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhcc
Q 003363 649 ---------------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 713 (826)
Q Consensus 649 ---------------~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~ 713 (826)
...+.|..++++++... +|+++|+++|+|+||++++.+++..|+ ++++|+..+....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~d~~a~l~~l~~~--~d~~rv~~~G~S~GG~~a~~~a~~~pr-i~Aav~~~~~~~~----- 184 (259)
T 4ao6_A 113 GLDAFPRMWHEGGGTAAVIADWAAALDFIEAE--EGPRPTGWWGLSMGTMMGLPVTASDKR-IKVALLGLMGVEG----- 184 (259)
T ss_dssp GSTTHHHHHHHTTHHHHHHHHHHHHHHHHHHH--HCCCCEEEEECTHHHHHHHHHHHHCTT-EEEEEEESCCTTS-----
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHhhhc--cCCceEEEEeechhHHHHHHHHhcCCc-eEEEEEecccccc-----
Confidence 11245777788887665 688999999999999999999998774 6666654332110
Q ss_pred CCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEE
Q 003363 714 TTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 793 (826)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 793 (826)
... .++...+.+|++|+|++||++|.+||+++++++++++.. .+.+
T Consensus 185 ------------------------~~~--------~~~~~~a~~i~~P~Li~hG~~D~~vp~~~~~~l~~al~~--~~k~ 230 (259)
T 4ao6_A 185 ------------------------VNG--------EDLVRLAPQVTCPVRYLLQWDDELVSLQSGLELFGKLGT--KQKT 230 (259)
T ss_dssp ------------------------TTH--------HHHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHHHHCCC--SSEE
T ss_pred ------------------------ccc--------cchhhhhccCCCCEEEEecCCCCCCCHHHHHHHHHHhCC--CCeE
Confidence 000 123345678999999999999999999999999999854 4578
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 794 VIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 794 ~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
++++|+..|.+ ...+.+..+++||++|||
T Consensus 231 l~~~~G~H~~~----p~~e~~~~~~~fl~~hLk 259 (259)
T 4ao6_A 231 LHVNPGKHSAV----PTWEMFAGTVDYLDQRLK 259 (259)
T ss_dssp EEEESSCTTCC----CHHHHTHHHHHHHHHHCC
T ss_pred EEEeCCCCCCc----CHHHHHHHHHHHHHHhcC
Confidence 88998854433 345778999999999997
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-22 Score=223.15 Aligned_cols=268 Identities=16% Similarity=0.184 Sum_probs=199.2
Q ss_pred CCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe
Q 003363 106 GNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW 185 (826)
Q Consensus 106 ~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~ 185 (826)
+.+.+++|...... +.....|++++++ +...+.++... ..+..++|||||++|||++..+ +...++..+
T Consensus 141 ~~~~~l~~~s~~~~---~~~~~~i~i~d~~--g~~~~~l~~~~-----~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d 209 (415)
T 2hqs_A 141 AFRTRIAYVVQTNG---GQFPYELRVSDYD--GYNQFVVHRSP-----QPLMSPAWSPDGSKLAYVTFES-GRSALVIQT 209 (415)
T ss_dssp CTTCEEEEEEECSS---SSCCEEEEEEETT--SCSCEEEEEES-----SCEEEEEECTTSSEEEEEECTT-SSCEEEEEE
T ss_pred cCCCEEEEEEecCC---CCccceEEEEcCC--CCCCEEEeCCC-----CcceeeEEcCCCCEEEEEEecC-CCcEEEEEE
Confidence 44677888765421 2233788888864 44556666554 4688999999999999998653 344565555
Q ss_pred -cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCC
Q 003363 186 -SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWG 264 (826)
Q Consensus 186 -~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g 264 (826)
.+++.+++....... ..++|||||++|+|.+...
T Consensus 210 ~~tg~~~~l~~~~~~~----------~~~~~spdg~~la~~~~~~----------------------------------- 244 (415)
T 2hqs_A 210 LANGAVRQVASFPRHN----------GAPAFSPDGSKLAFALSKT----------------------------------- 244 (415)
T ss_dssp TTTCCEEEEECCSSCE----------EEEEECTTSSEEEEEECTT-----------------------------------
T ss_pred CCCCcEEEeecCCCcc----------cCEEEcCCCCEEEEEEecC-----------------------------------
Confidence 455555554433222 7899999999999986532
Q ss_pred ccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEccc
Q 003363 265 ETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 344 (826)
Q Consensus 265 ~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 344 (826)
+...||+||+.+++.+.+ ......+..++|||||+. |+|.+... ....||.+|+
T Consensus 245 ------g~~~i~~~d~~~~~~~~l--~~~~~~~~~~~~spdg~~----l~~~s~~~------------g~~~i~~~d~-- 298 (415)
T 2hqs_A 245 ------GSLNLYVMDLASGQIRQV--TDGRSNNTEPTWFPDSQN----LAFTSDQA------------GRPQVYKVNI-- 298 (415)
T ss_dssp ------SSCEEEEEETTTCCEEEC--CCCSSCEEEEEECTTSSE----EEEEECTT------------SSCEEEEEET--
T ss_pred ------CCceEEEEECCCCCEEeC--cCCCCcccceEECCCCCE----EEEEECCC------------CCcEEEEEEC--
Confidence 346899999999999888 444556778999999999 99988422 2237999998
Q ss_pred ccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCccccee
Q 003363 345 YKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 424 (826)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 424 (826)
.+++.++++.+...+..+.|||||++|++.+.+. +...|++||+.+++.+.++...
T Consensus 299 ---------------~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~--------g~~~i~~~d~~~~~~~~l~~~~- 354 (415)
T 2hqs_A 299 ---------------NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG--------GQQHIAKQDLATGGVQVLSSTF- 354 (415)
T ss_dssp ---------------TSSCCEECCCSSSEEEEEEECTTSSEEEEEEECS--------SCEEEEEEETTTCCEEECCCSS-
T ss_pred ---------------CCCCEEEEecCCCcccCeEECCCCCEEEEEECcC--------CceEEEEEECCCCCEEEecCCC-
Confidence 7777888887766778899999999999998763 2468999999886654333211
Q ss_pred eeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecC
Q 003363 425 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDG 499 (826)
Q Consensus 425 ~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg 499 (826)
....+.|+|||+.|++.+...+...||.+|++++..++|+...+.+....|+|..
T Consensus 355 --------------------~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 355 --------------------LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp --------------------SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCCC
T ss_pred --------------------CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCcccccc
Confidence 2336789999999999988888889999999999999998877777777888754
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=218.81 Aligned_cols=231 Identities=17% Similarity=0.197 Sum_probs=171.8
Q ss_pred eccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCC
Q 003363 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (826)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~-~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~ 646 (826)
+...+|..+.+++..|......++.|+||++|||++.. ....+...+..|+++||.|+++|+||.+.... ..
T Consensus 19 ~~~~~g~~l~~~~~~~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~-------~~ 91 (276)
T 3hxk_A 19 FSLNDTAWVDFYQLQNPRQNENYTFPAIIICPGGGYQHISQRESDPLALAFLAQGYQVLLLNYTVMNKGTN-------YN 91 (276)
T ss_dssp CCCBTTBEEEEECCCC------CCBCEEEEECCSTTTSCCGGGSHHHHHHHHHTTCEEEEEECCCTTSCCC-------SC
T ss_pred ccCCCCeEEEEEEeCCcccccCCCCCEEEEEcCCccccCCchhhHHHHHHHHHCCCEEEEecCccCCCcCC-------CC
Confidence 34456777877666654322347889999999977443 23456778889999999999999999654210 01
Q ss_pred CCcchHHHHHHHHHHHHHcC---CCCCCcEEEEEecchHHHHHHHHHh-CCCceeEEEecCCccchhhhccCCCCCCchh
Q 003363 647 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMVGTTDIPDWCY 722 (826)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~ 722 (826)
.......|+.++++++.+.. .+|+++|+|+|||+||.+++.++.+ .+++++++|+.+|+.++........ .
T Consensus 92 ~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~p~~~~~~~~~~~~--~--- 166 (276)
T 3hxk_A 92 FLSQNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTFGWPSDL--S--- 166 (276)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTTBCTTCCEEEEEHHHHHHHHHHSSSCSTTCCSEEEEEEECCBTTSSCSSSS--S---
T ss_pred cCchHHHHHHHHHHHHHHhHHHcCCCcceEEEEEeCHHHHHHHHHHhhccCCCccEEEEecCcccHHhhCCcch--h---
Confidence 11245789999999998864 3788999999999999999999987 7889999999999887543311110 0
Q ss_pred hhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCC
Q 003363 723 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH 802 (826)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H 802 (826)
...+. + +. . ...++...+.++.+|+|++||++|..+|++++..+++++++.+.+++++++++++|
T Consensus 167 --------~~~~~--~--~~--~-~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~~~~H 231 (276)
T 3hxk_A 167 --------HFNFE--I--EN--I-SEYNISEKVTSSTPPTFIWHTADDEGVPIYNSLKYCDRLSKHQVPFEAHFFESGPH 231 (276)
T ss_dssp --------SSCCC--C--SC--C-GGGBTTTTCCTTSCCEEEEEETTCSSSCTHHHHHHHHHHHTTTCCEEEEEESCCCT
T ss_pred --------hhhcC--c--hh--h-hhCChhhccccCCCCEEEEecCCCceeChHHHHHHHHHHHHcCCCeEEEEECCCCC
Confidence 01111 1 11 1 44567777888899999999999999999999999999999999999999999999
Q ss_pred CCCCCCC------------HHHHHHHHHHHHHHHc
Q 003363 803 GIERPQS------------DFESFLNIGLWFKKYC 825 (826)
Q Consensus 803 ~~~~~~~------------~~~~~~~i~~w~~~~l 825 (826)
.+..... ..++...+.+||+++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~ 266 (276)
T 3hxk_A 232 GVSLANRTTAPSDAYCLPSVHRWVSWASDWLERQI 266 (276)
T ss_dssp TCTTCSTTSCSSSTTCCHHHHTHHHHHHHHHHHHH
T ss_pred CccccCccccccccccCchHHHHHHHHHHHHHhCc
Confidence 8875333 3568888999999875
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=4e-23 Score=227.05 Aligned_cols=322 Identities=14% Similarity=0.142 Sum_probs=211.1
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003363 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (826)
Q Consensus 102 ~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (826)
|.+||||++|+|..... ....||++++ .+++.++++...- .....+.|||||++|+|.+... .+
T Consensus 41 ~~~SpDg~~l~~~~~~~------g~~~l~~~d~--~~g~~~~lt~~~~----~~~~~~~~spdg~~l~~~~~~~----~l 104 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFD------GPWNYYLLDL--NTQVATQLTEGRG----DNTFGGFLSPDDDALFYVKDGR----NL 104 (388)
T ss_dssp CCBCTTSCEEEEEECTT------SSCEEEEEET--TTCEEEECCCSSC----BCSSSCEECTTSSEEEEEETTT----EE
T ss_pred ccCCCCCCEEEEEEcCC------CCceEEEEeC--CCCceEEeeeCCC----CCccceEEcCCCCEEEEEeCCC----eE
Confidence 77899999999986521 2457888775 4456677765441 1233678999999999998642 56
Q ss_pred EEEe-cCCceeEEEecCCCccccccCCCcccce--eecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcce
Q 003363 182 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGI--SWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 258 (826)
Q Consensus 182 ~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~--~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (826)
+.++ .+++.+.++..+... .... .++|||+.|+..........+. ..|..
T Consensus 105 ~~~d~~~g~~~~~~~~~~~~---------~~~~~~~~~~dg~~l~~~~~~~~~~~~~---------------~~~~~--- 157 (388)
T 3pe7_A 105 MRVDLATLEENVVYQVPAEW---------VGYGTWVANSDCTKLVGIEIRREDWVPL---------------TDWKK--- 157 (388)
T ss_dssp EEEETTTCCEEEEEECCTTE---------EEEEEEEECTTSSEEEEEEEEGGGCCCC---------------CSHHH---
T ss_pred EEEECCCCcceeeeechhhc---------ccccceeECCCCCeeccccccCcccccc---------------cccch---
Confidence 7666 566666666554332 1223 3599999998765432110000 00000
Q ss_pred eecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEee-CCCCCccEEEEEeecCcceeeeeeeeccCCCce
Q 003363 259 WEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP-LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCAL 337 (826)
Q Consensus 259 ~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSP-Dg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l 337 (826)
|. +.+.......|+++|+++|+.+.+ +.....+..+.||| ||+. |+|...... ......|
T Consensus 158 ~~----~~~~~~~~~~l~~~d~~~g~~~~l--~~~~~~~~~~~~sp~dg~~----l~~~~~~~~---------~~~~~~l 218 (388)
T 3pe7_A 158 FH----EFYFTKPCCRLMRVDLKTGESTVI--LQENQWLGHPIYRPYDDST----VAFCHEGPH---------DLVDARM 218 (388)
T ss_dssp HH----HHGGGCCCEEEEEEETTTCCEEEE--EEESSCEEEEEEETTEEEE----EEEEECSCT---------TTSSCSE
T ss_pred hh----hhhccCCcceEEEEECCCCceEEe--ecCCccccccEECCCCCCE----EEEEEecCC---------CCCcceE
Confidence 00 011122347899999999999888 44444567899999 9999 999874211 0124589
Q ss_pred EEEEcccccchhhhhhhhcCCCCCCcceecCCCCc--cccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 338 YAVRVSLYKSEASELELKESSSEDLPVVNLTESIS--SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 338 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~--~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
|.+|+ +++..++|+.... .+..|.|||||++|+|.+.+.. .....|+++|+.+++
T Consensus 219 ~~~d~-----------------~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~------~~~~~l~~~d~~~g~ 275 (388)
T 3pe7_A 219 WLINE-----------------DGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKG------SPDRFIYSADPETLE 275 (388)
T ss_dssp EEEET-----------------TSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETT------CCCEEEEEECTTTCC
T ss_pred EEEeC-----------------CCCceEEeeeCCCCcccccceECCCCCEEEEEecCCC------CCcceEEEEecCCCc
Confidence 99998 7778888887652 4678999999999999987641 112359999999877
Q ss_pred CCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEe------CCeEEEEEEECCCCcEEEecCCCC-
Q 003363 416 NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW------GSSQVIISVNVSSGELLRITPAES- 488 (826)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~------~~~~~l~~vdl~tg~~~~lt~~~~- 488 (826)
.+.++.... ... +........|+|||+.|++.... .+...||++|+++++.++|+....
T Consensus 276 ~~~l~~~~~-~~~-------------~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~ 341 (388)
T 3pe7_A 276 NRQLTSMPA-CSH-------------LMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTS 341 (388)
T ss_dssp EEEEEEECC-EEE-------------EEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCC
T ss_pred eEEEEcCCC-cee-------------eeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCc
Confidence 544332111 000 00112345799999999887644 567789999999999999987654
Q ss_pred ----------CeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 489 ----------NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 489 ----------~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
......|++||+.|++.+.. ...++||++++...
T Consensus 342 ~~~~~~~~~~~~~~~~~spDg~~l~~~s~~-~g~~~l~~~~l~~~ 385 (388)
T 3pe7_A 342 WKVFEGDRQVTHPHPSFTPDDKQILFTSDV-HGKPALYLATLPES 385 (388)
T ss_dssp CCCBTTBSSTTCCCCEECTTSSEEEEEECT-TSSCEEEEEECCGG
T ss_pred ccccccccccCCCCccCCCCCCEEEEEecC-CCceeEEEEECChh
Confidence 34556899999998888755 45567999887643
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-23 Score=212.84 Aligned_cols=214 Identities=17% Similarity=0.216 Sum_probs=163.3
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhh-------cCC
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ-------SLP 644 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~-------~~~ 644 (826)
+|..+.++++.|++ ..++.|+||++||..+. ...+...++.|+++||.|+++|++|.++....... ...
T Consensus 14 ~~~~~~~~~~~p~~--~~~~~p~vv~~HG~~g~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~~~~~~~~~~~~~~~~ 89 (241)
T 3f67_A 14 QGENMPAYHARPKN--ADGPLPIVIVVQEIFGV--HEHIRDLCRRLAQEGYLAIAPELYFRQGDPNEYHDIPTLFKELVS 89 (241)
T ss_dssp TTEEEEEEEEEETT--CCSCEEEEEEECCTTCS--CHHHHHHHHHHHHTTCEEEEECTTTTTCCGGGCCSHHHHHHHTGG
T ss_pred CCcceEEEEecCCC--CCCCCCEEEEEcCcCcc--CHHHHHHHHHHHHCCcEEEEecccccCCCCCchhhHHHHHHHhhh
Confidence 67889999999984 34678999999996544 34677788899999999999999996554332210 000
Q ss_pred CCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhh
Q 003363 645 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 724 (826)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~ 724 (826)
........+|+.++++++.+++ +|.++|+|+|||+||.+++.++.++|+ ++++++..+..... .
T Consensus 90 ~~~~~~~~~d~~~~~~~l~~~~-~d~~~i~l~G~S~Gg~~a~~~a~~~~~-~~~~v~~~~~~~~~-------~------- 153 (241)
T 3f67_A 90 KVPDAQVLADLDHVASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQ-LKAAVAWYGKLVGE-------K------- 153 (241)
T ss_dssp GSCHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEETHHHHHHHHHHTTCTT-CCEEEEESCCCSCC-------C-------
T ss_pred cCCchhhHHHHHHHHHHHHhcc-CCCCeEEEEEEcccHHHHHHHHhhCcC-cceEEEEeccccCC-------C-------
Confidence 0111234789999999999887 788999999999999999999999887 66666655432100 0
Q ss_pred hccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCC
Q 003363 725 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804 (826)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 804 (826)
..+...+|...+.++++|+|+++|++|..+|++++..+++.+++.+.+++++++++++|.+
T Consensus 154 -------------------~~~~~~~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 214 (241)
T 3f67_A 154 -------------------SLNSPKHPVDIAVDLNAPVLGLYGAKDASIPQDTVETMRQALRAANATAEIVVYPEADHAF 214 (241)
T ss_dssp -------------------CSSSCCCHHHHGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHHHTTCSEEEEEETTCCTTT
T ss_pred -------------------ccCCccCHHHhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCcce
Confidence 0011234555667789999999999999999999999999999999999999999999998
Q ss_pred CCC-------CCHHHHHHHHHHHHHHH
Q 003363 805 ERP-------QSDFESFLNIGLWFKKY 824 (826)
Q Consensus 805 ~~~-------~~~~~~~~~i~~w~~~~ 824 (826)
... ....+.+..+++||++|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~fl~~~ 241 (241)
T 3f67_A 215 NADYRASYHEESAKDGWQRMLAWFAQY 241 (241)
T ss_dssp TCTTSTTCCHHHHHHHHHHHHHHHTTC
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhhC
Confidence 632 22356788999999875
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-23 Score=210.93 Aligned_cols=240 Identities=13% Similarity=0.156 Sum_probs=162.3
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC-cc
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG-SQ 650 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~-~~ 650 (826)
+|..++++++.|++ ..++.|+||++||.+.......|...+..|+++||.|+++|+||.+.+.... ..+. ..
T Consensus 9 ~g~~l~~~~~~p~~--~~~~~p~vvl~HG~~~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~-----~~~~~~~ 81 (251)
T 2wtm_A 9 DGIKLNAYLDMPKN--NPEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKF-----EDHTLFK 81 (251)
T ss_dssp TTEEEEEEEECCTT--CCSSEEEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTSSSCG-----GGCCHHH
T ss_pred CCcEEEEEEEccCC--CCCCCCEEEEEcCCCcccccccHHHHHHHHHHCCCEEEEecCCCCCCCCCcc-----ccCCHHH
Confidence 67889999998864 2356799999999765533456777888999999999999999955432211 0111 12
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcC
Q 003363 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 730 (826)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (826)
..+|+.++++++.+...+ +++.|+||||||.+++.++.++|++++++|+.+|.................+........
T Consensus 82 ~~~d~~~~~~~l~~~~~~--~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (251)
T 2wtm_A 82 WLTNILAVVDYAKKLDFV--TDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDPENIPDE 159 (251)
T ss_dssp HHHHHHHHHHHHTTCTTE--EEEEEEEETHHHHHHHHHHHHTTTTEEEEEEESCCTTHHHHHHHTEETTEECBTTBCCSE
T ss_pred HHHHHHHHHHHHHcCccc--ceEEEEEECcchHHHHHHHHhCcccceEEEEECcHHHhHHHHhhhhhccccCCchhcchH
Confidence 367888888888665333 589999999999999999999999999999999875432110000000000000000000
Q ss_pred CccCCCCC-ChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCC
Q 003363 731 KDSFTESP-SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQS 809 (826)
Q Consensus 731 ~~~~~~~~-~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~ 809 (826)
...+.... ...........++...+.++++|+|++||++|..+|++.+.++++.+. +++++++++++|.+ .+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~~~----~~~~~~~~~~gH~~--~~~ 233 (251)
T 2wtm_A 160 LDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYK----NCKLVTIPGDTHCY--DHH 233 (251)
T ss_dssp EEETTTEEEETHHHHHHTTCCHHHHHHHCCSCEEEEEETTCSSSCHHHHHHHHHHSS----SEEEEEETTCCTTC--TTT
T ss_pred HhhhhccccchHHHHHHHccCHHHHHHhcCCCEEEEEeCCCCCcChHHHHHHHHhCC----CcEEEEECCCCccc--chh
Confidence 00000000 011122222334445567789999999999999999999998887764 48999999999998 555
Q ss_pred HHHHHHHHHHHHHHHcC
Q 003363 810 DFESFLNIGLWFKKYCK 826 (826)
Q Consensus 810 ~~~~~~~i~~w~~~~l~ 826 (826)
..++.+.+.+||+++++
T Consensus 234 ~~~~~~~i~~fl~~~~~ 250 (251)
T 2wtm_A 234 LELVTEAVKEFMLEQIA 250 (251)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 66899999999998864
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-22 Score=209.94 Aligned_cols=225 Identities=19% Similarity=0.218 Sum_probs=163.3
Q ss_pred CCCeeEEEEEEecCC---CCCCCCCcEEEEEcCCCCCC-CCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCC
Q 003363 571 GAQKPFEAIFVSSSH---KKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~---~~~~~~~P~vv~~HGg~~~~-~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~ 646 (826)
.++..+.+.+|.|+. +...++.|+||++|||++.. ....+...+..|+++||.|+++||||.+..+ .
T Consensus 11 ~~~~~~~~~~~~p~~~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~--------~- 81 (277)
T 3bxp_A 11 TAAHPFQITAYWLDQISDFETAVDYPIMIICPGGGFTYHSGREEAPIATRMMAAGMHTVVLNYQLIVGDQ--------S- 81 (277)
T ss_dssp STTCCEEEEEEEECCCCSSSCCCCEEEEEEECCSTTTSCCCTTHHHHHHHHHHTTCEEEEEECCCSTTTC--------C-
T ss_pred cCCCcceEEEEeCCcccccccCCCccEEEEECCCccccCCCccchHHHHHHHHCCCEEEEEecccCCCCC--------c-
Confidence 355678888898873 23457889999999976433 2346677888999999999999999944211 1
Q ss_pred CCcchHHHHHHHHHHHHHcC---CCCCCcEEEEEecchHHHHHHHHHhC--------------CCceeEEEecCCccchh
Q 003363 647 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--------------PDKFVAAAARNPLCNLA 709 (826)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~a~~~--------------p~~~~a~v~~~p~~~~~ 709 (826)
.......|+.++++++.+.. .+|+++|+|+|||+||.+++.++.++ +.+++++|+.+|+.++.
T Consensus 82 ~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~~ 161 (277)
T 3bxp_A 82 VYPWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAIILGYPVIDLT 161 (277)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTSHHHHHHTTCTTCCCCCSEEEEESCCCBTT
T ss_pred cCchHHHHHHHHHHHHHhhhhhcCCChhheEEEEeCHHHHHHHHHHhhccCcccccccCcccccCCcCEEEEeCCcccCC
Confidence 12245789999999988762 36778999999999999999999885 67899999999987643
Q ss_pred hhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCC
Q 003363 710 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG 789 (826)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g 789 (826)
...... ..+...+ . ......+|...+.++.+|+|++||++|..+|++++.++++++++.+
T Consensus 162 ~~~~~~----~~~~~~~--------~--------~~~~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~ 221 (277)
T 3bxp_A 162 AGFPTT----SAARNQI--------T--------TDARLWAAQRLVTPASKPAFVWQTATDESVPPINSLKYVQAMLQHQ 221 (277)
T ss_dssp SSSSSS----HHHHHHH--------C--------SCGGGSBGGGGCCTTSCCEEEEECTTCCCSCTHHHHHHHHHHHHTT
T ss_pred CCCCCc----cccchhc--------c--------chhhhcCHhhccccCCCCEEEEeeCCCCccChHHHHHHHHHHHHCC
Confidence 210000 0000000 0 0123456777777888999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCCCCCCCCC--------------HHHHHHHHHHHHHHH
Q 003363 790 VETKVIVFPNDVHGIERPQS--------------DFESFLNIGLWFKKY 824 (826)
Q Consensus 790 ~~~~~~~~p~~~H~~~~~~~--------------~~~~~~~i~~w~~~~ 824 (826)
.+++++++++++|.+..... ..++++.+.+||+++
T Consensus 222 ~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~ 270 (277)
T 3bxp_A 222 VATAYHLFGSGIHGLALANHVTQKPGKDKYLNDQAAIWPQLALRWLQEQ 270 (277)
T ss_dssp CCEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEEeCCCCcccccccccccCccccccccchHHHHHHHHHHHHHhc
Confidence 99999999999997754332 357888999999876
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-22 Score=220.34 Aligned_cols=229 Identities=14% Similarity=0.097 Sum_probs=169.3
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcch
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~ 651 (826)
+|..+.++++.|++ .++.|+||++||++... ..+....+.|+++||.|+++|+||. |.+.. ........
T Consensus 135 dg~~i~~~l~~p~~---~~~~P~vl~~hG~~~~~--~~~~~~~~~l~~~G~~v~~~d~rG~---G~s~~---~~~~~~~~ 203 (386)
T 2jbw_A 135 DGIPMPVYVRIPEG---PGPHPAVIMLGGLESTK--EESFQMENLVLDRGMATATFDGPGQ---GEMFE---YKRIAGDY 203 (386)
T ss_dssp TTEEEEEEEECCSS---SCCEEEEEEECCSSCCT--TTTHHHHHHHHHTTCEEEEECCTTS---GGGTT---TCCSCSCH
T ss_pred CCEEEEEEEEcCCC---CCCCCEEEEeCCCCccH--HHHHHHHHHHHhCCCEEEEECCCCC---CCCCC---CCCCCccH
Confidence 68899999999984 36789999999876542 2333447888999999999999994 44311 11112223
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCC
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 731 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (826)
.+++.++++++.+++.+|.++|+|+|||+||++++.++.+ |++|+++|+. |+.++...... .+.. ..... .
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~la~~~a~~-~~~~~a~v~~-~~~~~~~~~~~--~~~~-~~~~~----~ 274 (386)
T 2jbw_A 204 EKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAAC-EPRLAACISW-GGFSDLDYWDL--ETPL-TKESW----K 274 (386)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHH-CTTCCEEEEE-SCCSCSTTGGG--SCHH-HHHHH----H
T ss_pred HHHHHHHHHHHHhCCCcCcccEEEEEEChHHHHHHHHHcC-CcceeEEEEe-ccCChHHHHHh--ccHH-HHHHH----H
Confidence 4568899999999887889999999999999999999998 8999999999 98876443221 0000 00000 0
Q ss_pred ccCCCCCChhhH-HHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHH-HhCCCCEEEEEeCCCCCCCCCCCC
Q 003363 732 DSFTESPSVEDL-TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARAL-REKGVETKVIVFPNDVHGIERPQS 809 (826)
Q Consensus 732 ~~~~~~~~~~~~-~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l-~~~g~~~~~~~~p~~~H~~~~~~~ 809 (826)
..+......+.. ..+...++...+.++++|+|+++|++|. +|+.++.++++++ +. +++++++++++|.+ ...
T Consensus 275 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~-v~~~~~~~l~~~l~~~---~~~~~~~~~~gH~~--~~~ 348 (386)
T 2jbw_A 275 YVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VPLSFVDTVLELVPAE---HLNLVVEKDGDHCC--HNL 348 (386)
T ss_dssp HHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSS-SCTHHHHHHHHHSCGG---GEEEEEETTCCGGG--GGG
T ss_pred HHhCCCCHHHHHHHHHHhCChhhhhcccCCCEEEEECCCCC-CCHHHHHHHHHHhcCC---CcEEEEeCCCCcCC--ccc
Confidence 001111112333 5566778888889999999999999999 9999999999998 64 58999999999976 334
Q ss_pred HHHHHHHHHHHHHHHcC
Q 003363 810 DFESFLNIGLWFKKYCK 826 (826)
Q Consensus 810 ~~~~~~~i~~w~~~~l~ 826 (826)
..+++..+.+||+++|+
T Consensus 349 ~~~~~~~i~~fl~~~l~ 365 (386)
T 2jbw_A 349 GIRPRLEMADWLYDVLV 365 (386)
T ss_dssp TTHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 45788999999999874
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=223.98 Aligned_cols=231 Identities=16% Similarity=0.172 Sum_probs=164.8
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHH
Q 003363 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 654 (826)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D 654 (826)
.+.+.++.|+ ..++.|+||++||++.. .+...+..|+++||.|+++|+||.++. +........+|
T Consensus 144 ~l~~~l~~P~---~~~~~P~Vv~~hG~~~~----~~~~~a~~La~~Gy~V~a~D~rG~g~~--------~~~~~~~~~~d 208 (422)
T 3k2i_A 144 RVRATLFLPP---GPGPFPGIIDIFGIGGG----LLEYRASLLAGHGFATLALAYYNFEDL--------PNNMDNISLEY 208 (422)
T ss_dssp TEEEEEEECS---SSCCBCEEEEECCTTCS----CCCHHHHHHHTTTCEEEEEECSSSTTS--------CSSCSCEETHH
T ss_pred cEEEEEEcCC---CCCCcCEEEEEcCCCcc----hhHHHHHHHHhCCCEEEEEccCCCCCC--------CCCcccCCHHH
Confidence 5889999997 35678999999997654 234457889999999999999995543 22333456899
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhc---cCCCCCCchhh-h--hccC
Q 003363 655 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV---GTTDIPDWCYV-E--SYGS 728 (826)
Q Consensus 655 ~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~---~~~~~~~~~~~-~--~~~~ 728 (826)
+.++++++.++..+|.++|+|+|||+||.+++.++.++|+ ++++|+.+|........ .....+..... . ....
T Consensus 209 ~~~~~~~l~~~~~v~~~~i~l~G~S~GG~lAl~~a~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (422)
T 3k2i_A 209 FEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKN-VSATVSINGSGISGNTAINYKHSSIPPLGYDLRRIKVAF 287 (422)
T ss_dssp HHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSS-EEEEEEESCCSBCCSSCEEETTEEECCCCBCGGGCEECT
T ss_pred HHHHHHHHHhCcCcCCCCEEEEEECHHHHHHHHHHhhCcC-ccEEEEEcCcccccCCchhhcCCcCCCcccchhhcccCc
Confidence 9999999999888889999999999999999999999998 99999988875321100 00000000000 0 0000
Q ss_pred cC---CccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHH-HHHHHHHHhCCCC-EEEEEeCCCCCC
Q 003363 729 KG---KDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNG-LQYARALREKGVE-TKVIVFPNDVHG 803 (826)
Q Consensus 729 ~~---~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~-~~~~~~l~~~g~~-~~~~~~p~~~H~ 803 (826)
.. .......+. .....+....+.++++|+|++||++|..+|..+. +.+.++|++.+++ +++++||+++|.
T Consensus 288 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~~l~~~g~~~~~l~~~~gagH~ 362 (422)
T 3k2i_A 288 SGLVDIVDIRNALV-----GGYKNPSMIPIEKAQGPILLIVGQDDHNWRSELYAQTVSERLQAHGKEKPQIICYPGTGHY 362 (422)
T ss_dssp TSCEECTTCBCCCT-----TGGGSTTBCCGGGCCSCEEEEEETTCSSSCHHHHHHHHHHHHHHTTCCCCEEEEETTCCSC
T ss_pred chhHHHHHHHhhhh-----hcccccccccHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEECCCCCE
Confidence 00 000001110 0112233345678899999999999999999866 6899999999988 999999999999
Q ss_pred CCCC---------------------------CCHHHHHHHHHHHHHHHcC
Q 003363 804 IERP---------------------------QSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 804 ~~~~---------------------------~~~~~~~~~i~~w~~~~l~ 826 (826)
+..+ +...+.++.+++||++||+
T Consensus 363 ~~~p~~p~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~i~~Fl~~~L~ 412 (422)
T 3k2i_A 363 IEPPYFPLCPASLHRLLNKHVIWGGEPRAHSKAQEDAWKQILAFFCKHLG 412 (422)
T ss_dssp CCSTTCCCCCEEEETTTTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ECCCCCCcchhhhccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8322 3456789999999999984
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-22 Score=219.44 Aligned_cols=216 Identities=16% Similarity=0.160 Sum_probs=170.3
Q ss_pred eeccC-CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH----------HHHHHHHCCcEEEEECCCCCCCC
Q 003363 567 NLTKG-AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK----------SLAFLSSVGYSLLIVNYRGSLGF 635 (826)
Q Consensus 567 ~~~~~-~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~----------~~~~la~~G~~Vl~~d~rG~~g~ 635 (826)
.+.+. +|..+.+++|.|+++++.+++|+||++||+++......... ...+....|+.|+++|++|.+++
T Consensus 148 ~~~~~~dg~~l~~~v~~P~~~~~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vv~pd~~g~~~~ 227 (380)
T 3doh_A 148 TFKDPETGVEIPYRLFVPKDVNPDRKYPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCPPNSSW 227 (380)
T ss_dssp EEECTTTCCEEEEEEECCSSCCTTSCEEEEEEECCGGGCSSSSSHHHHSSTTTTGGGSHHHHTTSCCEEEEECCCTTCCS
T ss_pred eeccCCCCcEEEEEEEcCCCCCCCCCccEEEEECCCCCCCCchhhhhhccccceeecCccccccCCEEEEEecCCCCCcc
Confidence 44555 78899999999998767888999999999875432211110 12234577899999999998888
Q ss_pred chhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCC
Q 003363 636 GEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT 715 (826)
Q Consensus 636 G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~ 715 (826)
+..+........+.....|+.+++++++++..+|++||+|+|||+||++++.++.++|++|+++++.+|..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~sg~~~~------- 300 (380)
T 3doh_A 228 STLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGDV------- 300 (380)
T ss_dssp BTTTTCSSCTTSBCHHHHHHHHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCG-------
T ss_pred cccccccccccCCcchHHHHHHHHHHHHHhcCCCcCcEEEEEECccHHHHHHHHHhCCccceEEEEecCCCCh-------
Confidence 8776544444445667899999999999987789999999999999999999999999999999999986411
Q ss_pred CCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCC-CCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEE
Q 003363 716 DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 794 (826)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 794 (826)
..+.++ .+|+|++||+.|..+|++++++++++|++.|.++++
T Consensus 301 -------------------------------------~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 343 (380)
T 3doh_A 301 -------------------------------------SKVERIKDIPIWVFHAEDDPVVPVENSRVLVKKLAEIGGKVRY 343 (380)
T ss_dssp -------------------------------------GGGGGGTTSCEEEEEETTCSSSCTHHHHHHHHHHHHTTCCEEE
T ss_pred -------------------------------------hhhhhccCCCEEEEecCCCCccCHHHHHHHHHHHHHCCCceEE
Confidence 111223 389999999999999999999999999999999999
Q ss_pred EEeCCC---CCCCCCCCCHHHHHH--HHHHHHHHHcC
Q 003363 795 IVFPND---VHGIERPQSDFESFL--NIGLWFKKYCK 826 (826)
Q Consensus 795 ~~~p~~---~H~~~~~~~~~~~~~--~i~~w~~~~l~ 826 (826)
++||++ +|++.........+. .+++||.++.+
T Consensus 344 ~~~~~~~h~~h~~~~H~~~~~~~~~~~i~~wL~~~~r 380 (380)
T 3doh_A 344 TEYEKGFMEKHGWDPHGSWIPTYENQEAIEWLFEQSR 380 (380)
T ss_dssp EEECTTHHHHTTCCTTCTHHHHHTCHHHHHHHHTCC-
T ss_pred EEecCCcccCCCCCCchhHHHhcCCHHHHHHHHhhcC
Confidence 999999 555444445556666 89999988653
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-22 Score=215.52 Aligned_cols=242 Identities=14% Similarity=0.181 Sum_probs=170.1
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhh-hhcCC-
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA-LQSLP- 644 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~-~~~~~- 644 (826)
.+...+|..+.++++.|++. .++.|+||++||++.... +......|+++||.|+++|+||.++++... ....+
T Consensus 72 ~~~~~dg~~i~~~~~~P~~~--~~~~p~vv~~HG~g~~~~---~~~~~~~l~~~G~~v~~~d~rG~g~s~~~~~~~~~p~ 146 (337)
T 1vlq_A 72 TFSGYRGQRIKGWLLVPKLE--EEKLPCVVQYIGYNGGRG---FPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPE 146 (337)
T ss_dssp EEECGGGCEEEEEEEEECCS--CSSEEEEEECCCTTCCCC---CGGGGCHHHHTTCEEEEECCTTCCCSSSCCCCCBCCS
T ss_pred EEEcCCCCEEEEEEEecCCC--CCCccEEEEEcCCCCCCC---CchhhcchhhCCCEEEEecCCCCCCcccCCCCccccc
Confidence 34445678999999999842 567899999999776532 223445778899999999999977543210 00000
Q ss_pred ----CCCC---------------cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCc
Q 003363 645 ----GKVG---------------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (826)
Q Consensus 645 ----~~~~---------------~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~ 705 (826)
..+. ...++|+.++++++.+++.+|+++|+|+|||+||.+++.++.++| .++++|+.+|.
T Consensus 147 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p-~v~~~vl~~p~ 225 (337)
T 1vlq_A 147 GPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK-KAKALLCDVPF 225 (337)
T ss_dssp SSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCS-SCCEEEEESCC
T ss_pred ccCCCCCCcccccCCCCHHHhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeCHHHHHHHHHHhcCC-CccEEEECCCc
Confidence 0000 135789999999999988788899999999999999999999988 58999988885
Q ss_pred cc-hhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHH
Q 003363 706 CN-LALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARA 784 (826)
Q Consensus 706 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~ 784 (826)
.. +..+........+.....+.. .. ..........+...+|...+.++++|+|+++|+.|.++|++++.+++++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~~p~~~~~~~~~~ 300 (337)
T 1vlq_A 226 LCHFRRAVQLVDTHPYAEITNFLK----TH-RDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNICPPSTVFAAYNY 300 (337)
T ss_dssp SCCHHHHHHHCCCTTHHHHHHHHH----HC-TTCHHHHHHHHHTTCHHHHHTTCCSCEEEEEETTCSSSCHHHHHHHHHH
T ss_pred ccCHHHHHhcCCCcchHHHHHHHH----hC-chhHHHHHHhhhhccHHHHHHHcCCCEEEEeeCCCCCCCchhHHHHHHh
Confidence 43 332221111111111111000 00 0001122333445677778889999999999999999999999999988
Q ss_pred HHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 785 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 785 l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
++. +++++++++++|.+. ..+....+.+||.++|+
T Consensus 301 l~~---~~~~~~~~~~gH~~~----~~~~~~~~~~fl~~~l~ 335 (337)
T 1vlq_A 301 YAG---PKEIRIYPYNNHEGG----GSFQAVEQVKFLKKLFE 335 (337)
T ss_dssp CCS---SEEEEEETTCCTTTT----HHHHHHHHHHHHHHHHC
T ss_pred cCC---CcEEEEcCCCCCCCc----chhhHHHHHHHHHHHHh
Confidence 864 589999999999863 33567899999999874
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-22 Score=212.40 Aligned_cols=225 Identities=18% Similarity=0.185 Sum_probs=163.5
Q ss_pred cCCCeeEEEEEEecCCC---CCCCCCcEEEEEcCCCCCCC-CccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCC
Q 003363 570 KGAQKPFEAIFVSSSHK---KDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 645 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~---~~~~~~P~vv~~HGg~~~~~-~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~ 645 (826)
..+|..+...+| |+.. ...++.|+||++|||++... ...|...+..|+++||.|+++|+||.+..+
T Consensus 26 ~~~g~~~~~~~y-p~~~~~~~~~~~~p~vv~lHGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~~~~~--------- 95 (283)
T 3bjr_A 26 KLTATCAQLTGY-LHQPDTNAHQTNLPAIIIVPGGSYTHIPVAQAESLAMAFAGHGYQAFYLEYTLLTDQQ--------- 95 (283)
T ss_dssp ECTTSSCEEEEE-EC--------CCEEEEEEECCSTTTCCCHHHHHHHHHHHHTTTCEEEEEECCCTTTCS---------
T ss_pred ecCCCceeEEEe-cCCccccccCCCCcEEEEECCCccccCCccccHHHHHHHHhCCcEEEEEeccCCCccc---------
Confidence 334445666677 6642 14568899999999775332 345677888999999999999999965432
Q ss_pred CCCcchHHHHHHHHHHHHHcC---CCCCCcEEEEEecchHHHHHHHHHhCCCc-------------eeEEEecCCccchh
Q 003363 646 KVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPDK-------------FVAAAARNPLCNLA 709 (826)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~a~~~p~~-------------~~a~v~~~p~~~~~ 709 (826)
........|+.++++++.+.. .+|+++|+|+|||+||.+++.++.++|+. ++++++.+|..++.
T Consensus 96 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~~ 175 (283)
T 3bjr_A 96 PLGLAPVLDLGRAVNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAMLKPNNVVLGYPVISPL 175 (283)
T ss_dssp SCBTHHHHHHHHHHHHHHHSHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTTHHHHHHTCCHHHHCCSSEEEESCCCCTT
T ss_pred cCchhHHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHHHHHHHHHHhhccccchhhcCCCcCCCCccEEEEcCCccccc
Confidence 112235788999999998753 36778999999999999999999999987 89999999987643
Q ss_pred hhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCC
Q 003363 710 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG 789 (826)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g 789 (826)
..+.... . ....+.. .+...++...+.++.+|+|+++|++|..+|++++..+++.+++.|
T Consensus 176 ~~~~~~~-------~-----~~~~~~~--------~~~~~~~~~~~~~~~~P~lii~G~~D~~~p~~~~~~~~~~l~~~g 235 (283)
T 3bjr_A 176 LGFPKDD-------A-----TLATWTP--------TPNELAADQHVNSDNQPTFIWTTADDPIVPATNTLAYATALATAK 235 (283)
T ss_dssp SBC--------------------CCCC--------CGGGGCGGGSCCTTCCCEEEEEESCCTTSCTHHHHHHHHHHHHTT
T ss_pred ccccccc-------c-----hHHHHHH--------HhHhcCHHHhccCCCCCEEEEEcCCCCCCChHHHHHHHHHHHHCC
Confidence 2110000 0 0000100 123456667778889999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCCCCCCCC------------CHHHHHHHHHHHHHHH
Q 003363 790 VETKVIVFPNDVHGIERPQ------------SDFESFLNIGLWFKKY 824 (826)
Q Consensus 790 ~~~~~~~~p~~~H~~~~~~------------~~~~~~~~i~~w~~~~ 824 (826)
.+++++++++++|.+.... ...++...+.+||+++
T Consensus 236 ~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fl~~~ 282 (283)
T 3bjr_A 236 IPYELHVFKHGPHGLALANAQTAWKPDANQPHVAHWLTLALEWLADN 282 (283)
T ss_dssp CCEEEEEECCCSHHHHHHHHHHSCC-------CCHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCcccccccccccccccccchhHHHHHHHHHHHHhhc
Confidence 9999999999999764322 1246788999999875
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-22 Score=223.32 Aligned_cols=234 Identities=14% Similarity=0.176 Sum_probs=162.5
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHH
Q 003363 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 654 (826)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D 654 (826)
.+.+++|.|+ ..++.|+||++||++... +...+..|+++||.|+++||||.++.+ .......++|
T Consensus 160 ~l~~~l~~P~---~~~~~P~Vv~lhG~~~~~----~~~~a~~La~~Gy~Vla~D~rG~~~~~--------~~~~~~~~~d 224 (446)
T 3hlk_A 160 RVRGTLFLPP---EPGPFPGIVDMFGTGGGL----LEYRASLLAGKGFAVMALAYYNYEDLP--------KTMETLHLEY 224 (446)
T ss_dssp TEEEEEEECS---SSCCBCEEEEECCSSCSC----CCHHHHHHHTTTCEEEEECCSSSTTSC--------SCCSEEEHHH
T ss_pred eEEEEEEeCC---CCCCCCEEEEECCCCcch----hhHHHHHHHhCCCEEEEeccCCCCCCC--------cchhhCCHHH
Confidence 5889999997 456789999999986542 234578899999999999999965432 2333356899
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhc---cCCCCCCchh-hhh--ccC
Q 003363 655 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV---GTTDIPDWCY-VES--YGS 728 (826)
Q Consensus 655 ~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~---~~~~~~~~~~-~~~--~~~ 728 (826)
+.++++++.++..+|.++|+|+|||+||.+++.++.++|+ ++++|+.+|........ .....+...+ ... ...
T Consensus 225 ~~~a~~~l~~~~~vd~~~i~l~G~S~GG~lAl~~A~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (446)
T 3hlk_A 225 FEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKG-ITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRIKVTK 303 (446)
T ss_dssp HHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSC-EEEEEEESCCSBCCSSEEEETTEEECCCCBCGGGCEECS
T ss_pred HHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHHhCCC-ceEEEEEcCcccccCCCccccCccCCccccchhcccccc
Confidence 9999999999988899999999999999999999999998 89999988865321100 0000000000 000 000
Q ss_pred cCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHH-HHHHHHHHhCCCC-EEEEEeCCCCCCCCC
Q 003363 729 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNG-LQYARALREKGVE-TKVIVFPNDVHGIER 806 (826)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~-~~~~~~l~~~g~~-~~~~~~p~~~H~~~~ 806 (826)
.....+... ...............+.++++|+|+++|++|..+|..+. ..+++.|++.|.+ +++++||+++|.+..
T Consensus 304 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~~l~~~g~~~~~l~~~pgagH~~~~ 381 (446)
T 3hlk_A 304 DGYADIVDV--LNSPLEGPDQKSFIPVERAESTFLFLVGQDDHNWKSEFYANEACKRLQAHGRRKPQIICYPETGHYIEP 381 (446)
T ss_dssp SSCEECTTC--BCCTTSGGGGGGBCCGGGCCSEEEEEEETTCCSSCHHHHHHHHHHHHHHTTCCCCEEEEETTBCSCCCS
T ss_pred chHHHHHHH--HhchhhccccccccCHHHCCCCEEEEEeCCCCCcChHHHHHHHHHHHHHcCCCCcEEEEECCCCCeECC
Confidence 000000000 000000011122234677889999999999999999554 7899999999988 899999999999831
Q ss_pred ---------------------------CCCHHHHHHHHHHHHHHHcC
Q 003363 807 ---------------------------PQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 807 ---------------------------~~~~~~~~~~i~~w~~~~l~ 826 (826)
.+...+.++.+++||++||+
T Consensus 382 p~~P~~~~~~~~~~~~~~~~gG~~~~~~~a~~~~~~~i~~Fl~~~L~ 428 (446)
T 3hlk_A 382 PYFPLCRASLHALVGSPIIWGGEPRAHAMAQVDAWKQLQTFFHKHLG 428 (446)
T ss_dssp TTCCCCCBC-------CBBCCBCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCChhhcccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhhC
Confidence 11256789999999999984
|
| >3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-22 Score=216.81 Aligned_cols=238 Identities=18% Similarity=0.219 Sum_probs=160.4
Q ss_pred eeccCCCeeEEEEEEe-cCCC--------------------CCCCCCcEEEEEcCCCCCCCCc---cchHHHHHHHHC-C
Q 003363 567 NLTKGAQKPFEAIFVS-SSHK--------------------KDCSCDPLIVVLHGGPHSVSLS---SYSKSLAFLSSV-G 621 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~-P~~~--------------------~~~~~~P~vv~~HGg~~~~~~~---~~~~~~~~la~~-G 621 (826)
.+...+| +...+|. |... ...++.|+||++|||++..... .|...++.|+++ |
T Consensus 68 ~~~~~~g--l~~~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Pvvv~~HGGg~~~g~~~~~~~~~~~~~la~~~g 145 (365)
T 3ebl_A 68 IIDQSVG--LEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSK 145 (365)
T ss_dssp EEETTTT--EEEEEEEEC----------------CGGGGSCCBSSCCEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHT
T ss_pred EecCCCC--ceEEEEeCCCccccccccccccccccccccCCCCCCcceEEEEEcCCccccCCCchhhHHHHHHHHHHHCC
Confidence 3444556 6667776 8642 2346789999999988654332 256677788775 9
Q ss_pred cEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcC----CCCCC-cEEEEEecchHHHHHHHHHhCCC--
Q 003363 622 YSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG----LANPS-KVTVVGGSHGGFLTTHLIGQAPD-- 694 (826)
Q Consensus 622 ~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~----~~d~~-rv~l~G~S~GG~~a~~~a~~~p~-- 694 (826)
|.|+.+|||++++.. ....++|+.++++|+.++. .+|++ ||+|+|+|+||++++.++.+.++
T Consensus 146 ~~Vv~~dyR~~p~~~-----------~~~~~~D~~~a~~~l~~~~~~~~~~d~~~ri~l~G~S~GG~la~~~a~~~~~~~ 214 (365)
T 3ebl_A 146 GVVVSVNYRRAPEHR-----------YPCAYDDGWTALKWVMSQPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAADEG 214 (365)
T ss_dssp SEEEEECCCCTTTSC-----------TTHHHHHHHHHHHHHHHCTTTEETTTTEEEEEEEEETHHHHHHHHHHHHHHHTT
T ss_pred CEEEEeeCCCCCCCC-----------CcHHHHHHHHHHHHHHhCchhhhCCCCCCcEEEEeeCccHHHHHHHHHHHHhcC
Confidence 999999999865432 2345899999999999764 58999 99999999999999999987665
Q ss_pred -ceeEEEecCCccchhhhccC------CCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCccc-ccCCCC----CcE
Q 003363 695 -KFVAAAARNPLCNLALMVGT------TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS-HISKVK----TPT 762 (826)
Q Consensus 695 -~~~a~v~~~p~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~~~i~----~Pv 762 (826)
.++++|+.+|+++....... ...........+.. .+...... ......+|+. ....++ +|+
T Consensus 215 ~~~~g~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~p~~~~~~~l~~~~~pP~ 287 (365)
T 3ebl_A 215 VKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWK----AYLPEDAD---RDHPACNPFGPNGRRLGGLPFAKS 287 (365)
T ss_dssp CCCCEEEEESCCCCCSSCCHHHHHHTTTSSCCHHHHHHHHH----HHSCTTCC---TTSTTTCTTSTTCCCCTTSCCCCE
T ss_pred CceeeEEEEccccCCCcCChhhhhcCCCcccCHHHHHHHHH----HhCCCCCC---CCCcccCCCCCcchhhccCCCCCE
Confidence 79999999998864321100 00000000000000 00000000 0001122322 223343 689
Q ss_pred EEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCC---CCCCHHHHHHHHHHHHHHHcC
Q 003363 763 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE---RPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 763 Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~---~~~~~~~~~~~i~~w~~~~l~ 826 (826)
||+||+.|..+ .++.+++++|++.|+++++++|||++|++. ..+...++++.+.+||+++++
T Consensus 288 Li~~G~~D~l~--~~~~~~~~~L~~~g~~v~l~~~~g~~H~f~~~~~~~~~~~~~~~i~~Fl~~~~~ 352 (365)
T 3ebl_A 288 LIIVSGLDLTC--DRQLAYADALREDGHHVKVVQCENATVGFYLLPNTVHYHEVMEEISDFLNANLY 352 (365)
T ss_dssp EEEEETTSTTH--HHHHHHHHHHHHTTCCEEEEEETTCCTTGGGSSCSHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCcccch--hHHHHHHHHHHHCCCCEEEEEECCCcEEEeccCCCHHHHHHHHHHHHHHHHhhh
Confidence 99999999765 667899999999999999999999999876 234456789999999999875
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-22 Score=206.29 Aligned_cols=241 Identities=10% Similarity=0.053 Sum_probs=165.5
Q ss_pred ccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
...+|..++++++.|. +.+.|+||++||++.......|...+..|+++||.|+++|+||.+....... ....
T Consensus 27 ~~~~g~~l~~~~~~p~----~~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~----~~~~ 98 (270)
T 3pfb_A 27 LERDGLQLVGTREEPF----GEIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFE----NMTV 98 (270)
T ss_dssp EEETTEEEEEEEEECS----SSSEEEEEEECCTTCCTTCHHHHHHHHHHHHTTCEEEEECCTTSTTSSSCGG----GCCH
T ss_pred eccCCEEEEEEEEcCC----CCCCCEEEEEcCCCCCccccHHHHHHHHHHhCCcEEEEEccccccCCCCCCC----ccCH
Confidence 3446889999999886 3458999999997766434457778889999999999999999554432211 0111
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccC
Q 003363 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 728 (826)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 728 (826)
...++|+.++++++.++. +.++++|+|||+||.+++.++.++|++++++|+.+|.................+......
T Consensus 99 ~~~~~d~~~~i~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (270)
T 3pfb_A 99 LNEIEDANAILNYVKTDP--HVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHIP 176 (270)
T ss_dssp HHHHHHHHHHHHHHHTCT--TEEEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCTHHHHHHHHTEETTEECCTTSCC
T ss_pred HHHHHhHHHHHHHHHhCc--CCCeEEEEEeCchhHHHHHHHHhCchhhcEEEEeccccccchhhhhhhhhccccCccccc
Confidence 223688889999988763 346999999999999999999999999999999999876532111000000000000000
Q ss_pred cCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCC
Q 003363 729 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 808 (826)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~ 808 (826)
.................+...+....+.++++|+|+++|++|..+|++.+..+.+.++ .++++++++++|.+. .+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~~ 251 (270)
T 3pfb_A 177 DRLPFKDLTLGGFYLRIAQQLPIYEVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIYQ----NSTLHLIEGADHCFS-DS 251 (270)
T ss_dssp SEEEETTEEEEHHHHHHHHHCCHHHHHTTCCSCEEEEEETTCSSSCTHHHHHHHHHCS----SEEEEEETTCCTTCC-TH
T ss_pred ccccccccccchhHhhcccccCHHHHHhhCCccEEEEEcCCCCCCCHHHHHHHHHhCC----CCeEEEcCCCCcccC-cc
Confidence 0000000000112233344455666788999999999999999999999988887764 489999999999876 44
Q ss_pred CHHHHHHHHHHHHHHH
Q 003363 809 SDFESFLNIGLWFKKY 824 (826)
Q Consensus 809 ~~~~~~~~i~~w~~~~ 824 (826)
...++.+.+.+||+++
T Consensus 252 ~~~~~~~~i~~fl~~~ 267 (270)
T 3pfb_A 252 YQKNAVNLTTDFLQNN 267 (270)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred chHHHHHHHHHHHhhc
Confidence 4557888999999875
|
| >2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.88 E-value=6.9e-21 Score=195.58 Aligned_cols=202 Identities=17% Similarity=0.215 Sum_probs=158.5
Q ss_pred ccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCC---CCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCC
Q 003363 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV---SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 645 (826)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~---~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~ 645 (826)
...+| .+.++++.|. +++.|+||++||.+... ....+...+..|+++||.|+++|+||.+..... .
T Consensus 29 ~~~~g-~l~~~~~~p~----~~~~p~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~G~s~~~------~ 97 (249)
T 2i3d_A 29 NGPAG-RLEGRYQPSK----EKSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQGE------F 97 (249)
T ss_dssp EETTE-EEEEEEECCS----STTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTCCSC------C
T ss_pred ECCCc-eEEEEEEcCC----CCCCCEEEEECCCcccCCCccchHHHHHHHHHHHCCCEEEEECCCCCCCCCCC------C
Confidence 33455 7999988875 35679999999964221 122446678889999999999999995433221 1
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhh
Q 003363 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 725 (826)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~ 725 (826)
.......+|+.++++++.++. .+.++|+|+|||+||.+++.++.++|+ ++++|+.+|..+...
T Consensus 98 ~~~~~~~~d~~~~i~~l~~~~-~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~--------------- 160 (249)
T 2i3d_A 98 DHGAGELSDAASALDWVQSLH-PDSKSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAPQPNTYD--------------- 160 (249)
T ss_dssp CSSHHHHHHHHHHHHHHHHHC-TTCCCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESCCTTTSC---------------
T ss_pred CCccchHHHHHHHHHHHHHhC-CCCCeEEEEEECHHHHHHHHHHhcCCC-ccEEEEEcCchhhhh---------------
Confidence 122345689999999998885 477899999999999999999999998 999999998654210
Q ss_pred ccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHh-CCCCEEEEEeCCCCCCC
Q 003363 726 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE-KGVETKVIVFPNDVHGI 804 (826)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~-~g~~~~~~~~p~~~H~~ 804 (826)
...+.++++|+|+++|++|..+|++++.++++.++. .+.+++++++++++|.+
T Consensus 161 --------------------------~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~H~~ 214 (249)
T 2i3d_A 161 --------------------------FSFLAPCPSSGLIINGDADKVAPEKDVNGLVEKLKTQKGILITHRTLPGANHFF 214 (249)
T ss_dssp --------------------------CTTCTTCCSCEEEEEETTCSSSCHHHHHHHHHHHTTSTTCCEEEEEETTCCTTC
T ss_pred --------------------------hhhhcccCCCEEEEEcCCCCCCCHHHHHHHHHHHhhccCCceeEEEECCCCccc
Confidence 123456789999999999999999999999999986 45679999999999988
Q ss_pred CCCCCHHHHHHHHHHHHHHHcC
Q 003363 805 ERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 805 ~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
. ....++.+.+.+||+++++
T Consensus 215 ~--~~~~~~~~~i~~fl~~~l~ 234 (249)
T 2i3d_A 215 N--GKVDELMGECEDYLDRRLN 234 (249)
T ss_dssp T--TCHHHHHHHHHHHHHHHHT
T ss_pred c--cCHHHHHHHHHHHHHHhcC
Confidence 6 3566889999999998863
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=196.19 Aligned_cols=201 Identities=20% Similarity=0.247 Sum_probs=156.4
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCC--C-CCC
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP--G-KVG 648 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~--~-~~~ 648 (826)
+|..+.++++.|.+ +.|+||++||++.......+...++.|+++||.|+++|+|| +|.+...... . ...
T Consensus 20 ~g~~l~~~~~~p~~-----~~p~vv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g---~g~s~~~~~~~~~~~~~ 91 (223)
T 2o2g_A 20 GEVKLKGNLVIPNG-----ATGIVLFAHGSGSSRYSPRNRYVAEVLQQAGLATLLIDLLT---QEEEEIDLRTRHLRFDI 91 (223)
T ss_dssp TTEEEEEEEECCTT-----CCEEEEEECCTTCCTTCHHHHHHHHHHHHHTCEEEEECSSC---HHHHHHHHHHCSSTTCH
T ss_pred CCeEEEEEEecCCC-----CceEEEEecCCCCCCCccchHHHHHHHHHCCCEEEEEcCCC---cCCCCccchhhcccCcH
Confidence 67889999998863 57999999997765433345567888999999999999998 4443322111 0 111
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccC
Q 003363 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 728 (826)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 728 (826)
....+|+.++++++..+..+|.++++++|||+||.+++.++.++|++++++|+.+|..+..
T Consensus 92 ~~~~~d~~~~i~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~------------------- 152 (223)
T 2o2g_A 92 GLLASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGGRPDLA------------------- 152 (223)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCGGGC-------------------
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCcEEEEEeCccHHHHHHHHHhCCCceEEEEEeCCCCCcC-------------------
Confidence 2236889999999998877899999999999999999999999999999999998864320
Q ss_pred cCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCC
Q 003363 729 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 808 (826)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~ 808 (826)
...+.++++|+|+++|++|..+|... .+.+.+.+.+++++++++++|.+..++
T Consensus 153 -----------------------~~~~~~~~~P~l~i~g~~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~H~~~~~~ 205 (223)
T 2o2g_A 153 -----------------------PSALPHVKAPTLLIVGGYDLPVIAMN----EDALEQLQTSKRLVIIPRASHLFEEPG 205 (223)
T ss_dssp -----------------------TTTGGGCCSCEEEEEETTCHHHHHHH----HHHHHHCCSSEEEEEETTCCTTCCSTT
T ss_pred -----------------------HHHHhcCCCCEEEEEccccCCCCHHH----HHHHHhhCCCeEEEEeCCCCcccCChH
Confidence 02345577999999999999886333 345555567899999999999987666
Q ss_pred CHHHHHHHHHHHHHHHcC
Q 003363 809 SDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 809 ~~~~~~~~i~~w~~~~l~ 826 (826)
...++...+.+||+++|+
T Consensus 206 ~~~~~~~~i~~fl~~~l~ 223 (223)
T 2o2g_A 206 ALTAVAQLASEWFMHYLR 223 (223)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 667889999999999986
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.2e-22 Score=199.92 Aligned_cols=208 Identities=18% Similarity=0.152 Sum_probs=159.0
Q ss_pred eccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhc-----
Q 003363 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQS----- 642 (826)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~----- 642 (826)
+...+|..+.++++.|. +++.|+||++||+... ...+...+..|+++||.|+++|+||.+..+......
T Consensus 8 ~~~~~g~~l~~~~~~p~----~~~~p~vv~~hG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~ 81 (236)
T 1zi8_A 8 IQSYDGHTFGALVGSPA----KAPAPVIVIAQDIFGV--NAFMRETVSWLVDQGYAAVCPDLYARQAPGTALDPQDERQR 81 (236)
T ss_dssp EECTTSCEECEEEECCS----SCSEEEEEEECCTTBS--CHHHHHHHHHHHHTTCEEEEECGGGGTSTTCBCCTTCHHHH
T ss_pred EecCCCCeEEEEEECCC----CCCCCEEEEEcCCCCC--CHHHHHHHHHHHhCCcEEEeccccccCCCcccccccchhhh
Confidence 34456788999999886 3578999999997654 346777888999999999999999865543211000
Q ss_pred ------CCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCC
Q 003363 643 ------LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD 716 (826)
Q Consensus 643 ------~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~ 716 (826)
..........+|+.++++++.++..++ ++|+|+|||+||.+++.++.++| ++++++.+|....
T Consensus 82 ~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~~i~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~-------- 150 (236)
T 1zi8_A 82 EQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSN-GKVGLVGYSLGGALAFLVASKGY--VDRAVGYYGVGLE-------- 150 (236)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHTSSTTEE-EEEEEEEETHHHHHHHHHHHHTC--SSEEEEESCSSGG--------
T ss_pred hhhhhhhhccCcchhhHHHHHHHHHHHhccCCC-CCEEEEEECcCHHHHHHHhccCC--ccEEEEecCcccc--------
Confidence 000011223678999999998775444 79999999999999999999988 8888877763210
Q ss_pred CCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEE
Q 003363 717 IPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 796 (826)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 796 (826)
++...+.++++|+|+++|++|..+|++.+..+++.+++.+ ++++++
T Consensus 151 ---------------------------------~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~-~~~~~~ 196 (236)
T 1zi8_A 151 ---------------------------------KQLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANP-LLQVHW 196 (236)
T ss_dssp ---------------------------------GCGGGGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHTTCT-TEEEEE
T ss_pred ---------------------------------cchhhhhhcCCCEEEEecCCCCCCCHHHHHHHHHHHHhCC-CceEEE
Confidence 1233456678999999999999999999999999997755 899999
Q ss_pred eCCCCCCCCCCCC-------HHHHHHHHHHHHHHHcC
Q 003363 797 FPNDVHGIERPQS-------DFESFLNIGLWFKKYCK 826 (826)
Q Consensus 797 ~p~~~H~~~~~~~-------~~~~~~~i~~w~~~~l~ 826 (826)
+++++|.+..... ..+.++.+.+||+++++
T Consensus 197 ~~~~~H~~~~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 233 (236)
T 1zi8_A 197 YEEAGHSFARTGSSGYVASAAALANERTLDFLVPLQS 233 (236)
T ss_dssp ETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHGGGCC
T ss_pred ECCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhcC
Confidence 9999998775432 34688999999999875
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.6e-21 Score=206.50 Aligned_cols=304 Identities=13% Similarity=0.125 Sum_probs=194.5
Q ss_pred CcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCC-CCCeEEEEe
Q 003363 107 NGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN-ESPIQFELW 185 (826)
Q Consensus 107 dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~-~~~~~~~i~ 185 (826)
||++|+|.....+...+.....||++++. +++.++| ..+..++|||||++|||++..++ +..+++.+.
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~l---------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~ 91 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLK--NNARRFI---------ENATMPRISPDGKKIAFMRANEEKKVSEIWVAD 91 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETT--TCCEEEE---------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEE
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCC--CCceEEc---------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEE
Confidence 99999999877766666678889998864 3344444 24788999999999999986542 445677777
Q ss_pred -cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCC
Q 003363 186 -SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWG 264 (826)
Q Consensus 186 -~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g 264 (826)
.+++.++++.... . ..+.|||||++|+|.+.+..... . ........|..+ |
T Consensus 92 ~~~g~~~~l~~~~~-~----------~~~~wspdg~~l~~~~~~~~~~~----------~------~~~~~~~~~~~~-g 143 (347)
T 2gop_A 92 LETLSSKKILEAKN-I----------RSLEWNEDSRKLLIVGFKRREDE----------D------FIFEDDVPAWFD-D 143 (347)
T ss_dssp TTTTEEEEEEEESE-E----------EEEEECTTSSEEEEEEECCCC-------------------------CCCC----
T ss_pred CCCCceEEEEcCCC-c----------cceeECCCCCEEEEEEccCCCcC----------C------cEEEcccceeec-C
Confidence 5677777776543 3 78999999999999986421000 0 000011112212 2
Q ss_pred ccCCCccCceEEEEEccCCce-EeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcc
Q 003363 265 ETYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVS 343 (826)
Q Consensus 265 ~~~~~~~~~~l~v~d~~~g~~-~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 343 (826)
..+......+||++|+++++. +.++ . . .+..+.||||| . ++......... +......||.+| .
T Consensus 144 ~~~~~~~~~~l~~~d~~~~~~~~~l~--~-~-~~~~~~~spdg-~----~~~~~~~~~~~------~~~~~~~l~~~d-~ 207 (347)
T 2gop_A 144 LGFFDGEKTTFWIFDTESEEVIEEFE--K-P-RFSSGIWHRDK-I----VVNVPHREIIP------QYFKFWDIYIWE-D 207 (347)
T ss_dssp ------CEEEEEEEETTTTEEEEEEE--E-E-TTCEEEEETTE-E----EEEEECCCSSC------CSSCCEEEEEEE-T
T ss_pred cccccCccceEEEEECCCCeEEeeec--C-C-CcccccCCCCe-E----EEEEecccccc------cccccccEEEeC-C
Confidence 222223457899999999998 7774 3 3 67889999998 6 65543211100 000133788887 2
Q ss_pred cccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccce
Q 003363 344 LYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 423 (826)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 423 (826)
++.++|+.+ .....+ ||||++|+|.+..... ......+||++| +++.+.++...
T Consensus 208 ------------------~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~---~~~~~~~l~~~d--~~~~~~l~~~~ 261 (347)
T 2gop_A 208 ------------------GKEEKMFEK-VSFYAV--DSDGERILLYGKPEKK---YMSEHNKLYIYD--GKEVMGILDEV 261 (347)
T ss_dssp ------------------TEEEEEEEE-ESEEEE--EECSSCEEEEECCSSS---CCCSSCEEEEEC--SSCEEESSTTC
T ss_pred ------------------CceEEeccC-cceeeE--CCCCCEEEEEEccccC---CccccceEEEEC--CCceEeccccC
Confidence 345566655 444434 9999999999876421 112346899998 44443333221
Q ss_pred eeeeeeeeccCCCCCcccccCCCCC-CccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEE
Q 003363 424 VDVIPVVQCAEGDCFPGLYSSSILS-NPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNI 502 (826)
Q Consensus 424 ~~~~~~~~~~~~~~f~g~~~~~~~~-~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l 502 (826)
.. .+.. +.|+ || +++.+..++...|| ++ +|+.++++...+.+....+++ .+
T Consensus 262 ~~-------------------~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~--~g~~~~~~~~~~~v~~~~~s~---~~ 313 (347)
T 2gop_A 262 DR-------------------GVGQAKIKD-GK--VYFTLFEEGSVNLY-IW--DGEIKPIAKGRHWIMGFDVDE---IV 313 (347)
T ss_dssp CS-------------------EEEEEEEET-TE--EEEEEEETTEEEEE-EE--SSSEEEEECSSSEEEEEEESS---SE
T ss_pred Cc-------------------ccCCccEEc-Cc--EEEEEecCCcEEEE-Ec--CCceEEEecCCCeEEeeeeeC---cE
Confidence 11 1223 6799 87 77888888899999 99 577788876655444444554 68
Q ss_pred EEEEeCCCCCCeEEEEe
Q 003363 503 IAVSSSPVDVPQVKYGY 519 (826)
Q Consensus 503 ~~~~s~~~~p~~l~~~~ 519 (826)
+++.++...|++||.++
T Consensus 314 ~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 314 VYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEECSSSCCEEEEES
T ss_pred EEEEcCCCChHHheEeC
Confidence 88888999999999987
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-21 Score=212.37 Aligned_cols=244 Identities=17% Similarity=0.146 Sum_probs=182.1
Q ss_pred CCCCeEEEEecCCCCC--CeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCC
Q 003363 163 PSGSKLLVVRNPENES--PIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 239 (826)
Q Consensus 163 PdG~~la~~~~~~~~~--~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~ 239 (826)
+.|++|+|++...++. ..++..+ +++..+.++.....+ ..++|||||++|||.+.+.
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v----------~~~~~Spdg~~la~~s~~~---------- 200 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPL----------MSPAWSPDGSKLAYVTFES---------- 200 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCE----------EEEEECTTSSEEEEEECTT----------
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcc----------eeeEEcCCCCEEEEEEecC----------
Confidence 4588999998764221 3455444 444555555433333 7999999999999987543
Q ss_pred CCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeec
Q 003363 240 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 319 (826)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~ 319 (826)
+...|++||+.+++.+.+ ......+..++|||||+. |+|++..
T Consensus 201 -------------------------------~~~~i~~~d~~tg~~~~l--~~~~~~~~~~~~spdg~~----la~~~~~ 243 (415)
T 2hqs_A 201 -------------------------------GRSALVIQTLANGAVRQV--ASFPRHNGAPAFSPDGSK----LAFALSK 243 (415)
T ss_dssp -------------------------------SSCEEEEEETTTCCEEEE--ECCSSCEEEEEECTTSSE----EEEEECT
T ss_pred -------------------------------CCcEEEEEECCCCcEEEe--ecCCCcccCEEEcCCCCE----EEEEEec
Confidence 236899999999998888 334446778999999999 9988732
Q ss_pred CcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCC
Q 003363 320 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 399 (826)
Q Consensus 320 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~ 399 (826)
+....||++|+ .+++.++++.+...+..+.|||||++|+|.+.++
T Consensus 244 ------------~g~~~i~~~d~-----------------~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~------ 288 (415)
T 2hqs_A 244 ------------TGSLNLYVMDL-----------------ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQA------ 288 (415)
T ss_dssp ------------TSSCEEEEEET-----------------TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTT------
T ss_pred ------------CCCceEEEEEC-----------------CCCCEEeCcCCCCcccceEECCCCCEEEEEECCC------
Confidence 23347999998 7788888988877888999999999999998653
Q ss_pred CcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc
Q 003363 400 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 479 (826)
Q Consensus 400 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~ 479 (826)
+..+||++|+.++....++.... ....+.|+|||+.|++.+...+...|+.+|+.+++
T Consensus 289 --g~~~i~~~d~~~~~~~~l~~~~~--------------------~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 289 --GRPQVYKVNINGGAPQRITWEGS--------------------QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp --SSCEEEEEETTSSCCEECCCSSS--------------------EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred --CCcEEEEEECCCCCEEEEecCCC--------------------cccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 34689999998866543332110 12356899999999988877777899999999999
Q ss_pred EEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003363 480 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (826)
Q Consensus 480 ~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 522 (826)
.+.++... ......|+++|+.|++...... ...|++.++.+
T Consensus 347 ~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~-~~~l~~~d~~g 387 (415)
T 2hqs_A 347 VQVLSSTF-LDETPSLAPNGTMVIYSSSQGM-GSVLNLVSTDG 387 (415)
T ss_dssp EEECCCSS-SCEEEEECTTSSEEEEEEEETT-EEEEEEEETTS
T ss_pred EEEecCCC-CcCCeEEcCCCCEEEEEEcCCC-ccEEEEEECCC
Confidence 98887664 4566789999998888775443 45688888653
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=6.5e-21 Score=227.94 Aligned_cols=312 Identities=12% Similarity=0.094 Sum_probs=194.6
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccce-eecCCcceecccEEEEeCCCCCeEEEEecCCC---
Q 003363 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTF-QWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN--- 176 (826)
Q Consensus 101 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~l-t~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~--- 176 (826)
...++|||+.++.. + ..|+++++.++ +..++ +...+.........++|||||++|+|..+...
T Consensus 21 ~~~w~~dg~~~~~~----~-------~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r 87 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ----E-------NNILVFNAEYG--NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWR 87 (740)
T ss_dssp CEEECSSSEEEEEE----T-------TEEEEEETTTC--CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSS
T ss_pred ccEECCCCcEEEEc----C-------CcEEEEECCCC--ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEE
Confidence 45678999766442 1 36777776433 32333 22221110011234899999999999886421
Q ss_pred --CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCC
Q 003363 177 --ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSW 253 (826)
Q Consensus 177 --~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (826)
....++..+ .+++.++++..... ...++|||||++|||++
T Consensus 88 ~~~~~~~~~~d~~~~~~~~l~~~~~~----------~~~~~~SPdG~~la~~~--------------------------- 130 (740)
T 4a5s_A 88 HSYTASYDIYDLNKRQLITEERIPNN----------TQWVTWSPVGHKLAYVW--------------------------- 130 (740)
T ss_dssp SCEEEEEEEEETTTTEECCSSCCCTT----------EEEEEECSSTTCEEEEE---------------------------
T ss_pred EccceEEEEEECCCCcEEEcccCCCc----------ceeeEECCCCCEEEEEE---------------------------
Confidence 112345444 45554443322222 27899999999999983
Q ss_pred CCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCC------------------ccceEEEeeCCCCCccEEEE
Q 003363 254 KGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL------------------SVGQVVWAPLNEGLHQYLVF 315 (826)
Q Consensus 254 ~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~------------------~~~~~~wSPDg~~~~~~lvf 315 (826)
+.+||++|+.+|+.++++ ..+.. ....+.|||||+. |+|
T Consensus 131 ------------------~~~i~~~~~~~~~~~~lt-~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~----la~ 187 (740)
T 4a5s_A 131 ------------------NNDIYVKIEPNLPSYRIT-WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTF----LAY 187 (740)
T ss_dssp ------------------TTEEEEESSTTSCCEECC-SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSE----EEE
T ss_pred ------------------CCeEEEEECCCCceEEEc-CCCCccceecCcccccccchhcCCCcceEECCCCCE----EEE
Confidence 257999999999998884 11211 1124899999999 999
Q ss_pred EeecCc-ceeee----------------eeeec----cCCCceEEEEcccccchhhhhhhhcCCCCC---C---cceecC
Q 003363 316 VGWSSE-TRKLG----------------IKYCY----NRPCALYAVRVSLYKSEASELELKESSSED---L---PVVNLT 368 (826)
Q Consensus 316 ~~~~~~-~~~~g----------------~~~~~----~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~---~---~~~~Lt 368 (826)
.+.+.. .+... +.|.. +....|+++|+ ++ + ..++|.
T Consensus 188 ~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~-----------------~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 188 AQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNT-----------------DSLSSVTNATSIQIT 250 (740)
T ss_dssp EEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEET-----------------TSCCSSSCCCEEEEC
T ss_pred EEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEEC-----------------CCCCCCCcceEEEec
Confidence 874433 11111 11111 12236888998 55 5 556665
Q ss_pred C------CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCC----CCcccceeeeeeeeeccCCCCC
Q 003363 369 E------SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN----FSSLEKIVDVIPVVQCAEGDCF 438 (826)
Q Consensus 369 ~------~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~f 438 (826)
. +......++|||||+.+++..++. .....|+++|+.+++. ..+.. + .....+.
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~-------~~~~~i~~~d~~tg~~~~~~~~~~~----l---~~~~~~~-- 314 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRI-------QNYSVMDICDYDESSGRWNCLVARQ----H---IEMSTTG-- 314 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESS-------TTEEEEEEEEEETTTTEEEECGGGC----E---EEECSSS--
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCC-------CCEEEEEEEECCCCccccceeEEEE----e---eeccCCc--
Confidence 4 455678899999999888887764 2346799999988761 11100 0 0000000
Q ss_pred cccccC--CCCCCccccCCCEEE-EEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeC---CCCC
Q 003363 439 PGLYSS--SILSNPWLSDGCTML-LSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS---PVDV 512 (826)
Q Consensus 439 ~g~~~~--~~~~~~ws~Dg~~l~-~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~---~~~p 512 (826)
|.. ....+.|||||+.|+ +.+..++..+||.+|+++++.++||.+...+.. .+++|++.|+|.+.. ...-
T Consensus 315 ---~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~-~~~~d~~~i~f~~~~~~~~~~~ 390 (740)
T 4a5s_A 315 ---WVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIG-IEALTSDYLYYISNEYKGMPGG 390 (740)
T ss_dssp ---CSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEE-EEEECSSEEEEEESCGGGCTTC
T ss_pred ---eEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEE-EEEEeCCEEEEEEecCCCCCce
Confidence 100 123678999999988 666677889999999999999999988765543 345778889888865 1223
Q ss_pred CeEEEEeecc
Q 003363 513 PQVKYGYFVD 522 (826)
Q Consensus 513 ~~l~~~~~~~ 522 (826)
..||.+++.+
T Consensus 391 ~~ly~v~~~g 400 (740)
T 4a5s_A 391 RNLYKIQLID 400 (740)
T ss_dssp BEEEEEETTE
T ss_pred eEEEEEECCC
Confidence 4677777654
|
| >3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=208.44 Aligned_cols=227 Identities=15% Similarity=0.206 Sum_probs=162.5
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CccchHHHHHHHH-CCcEEEEECCCCCCCCchhhhhcCC
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLP 644 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~-~~~~~~~~~~la~-~G~~Vl~~d~rG~~g~G~~~~~~~~ 644 (826)
++...+| .+.+.+|.|.+ ...|+||++|||++... ...+...+..|++ .||.|+++|||+++++.
T Consensus 67 ~~~~~~g-~i~~~~~~p~~----~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~V~~~dyr~~p~~~-------- 133 (326)
T 3ga7_A 67 AVPTPYG-DVTTRLYSPQP----TSQATLYYLHGGGFILGNLDTHDRIMRLLARYTGCTVIGIDYSLSPQAR-------- 133 (326)
T ss_dssp EECCTTS-CEEEEEEESSS----SCSCEEEEECCSTTTSCCTTTTHHHHHHHHHHHCSEEEEECCCCTTTSC--------
T ss_pred EeecCCC-CeEEEEEeCCC----CCCcEEEEECCCCcccCChhhhHHHHHHHHHHcCCEEEEeeCCCCCCCC--------
Confidence 3344455 79999999974 23399999999884432 3456677888877 89999999999865531
Q ss_pred CCCCcchHHHHHHHHHHHHHcC---CCCCCcEEEEEecchHHHHHHHHHhCCCc------eeEEEecCCccchhhhccCC
Q 003363 645 GKVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPDK------FVAAAARNPLCNLALMVGTT 715 (826)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~a~~~p~~------~~a~v~~~p~~~~~~~~~~~ 715 (826)
....++|+.++++|+.++. .+|++||+|+|+|+||.+++.++.++++. ++++++.+|+.+......
T Consensus 134 ---~~~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~la~~~a~~~~~~~~~~~~~~~~vl~~~~~~~~~~~~-- 208 (326)
T 3ga7_A 134 ---YPQAIEETVAVCSYFSQHADEYSLNVEKIGFAGDSAGAMLALASALWLRDKHIRCGNVIAILLWYGLYGLQDSVS-- 208 (326)
T ss_dssp ---TTHHHHHHHHHHHHHHHTTTTTTCCCSEEEEEEETHHHHHHHHHHHHHHHHTCCSSEEEEEEEESCCCSCSCCHH--
T ss_pred ---CCcHHHHHHHHHHHHHHhHHHhCCChhheEEEEeCHHHHHHHHHHHHHHhcCCCccCceEEEEeccccccCCChh--
Confidence 2335799999999999863 47899999999999999999999887764 899999999875421100
Q ss_pred CCCCchhhhhccCcCCccCCCCCChhhHHHH---------hhcCcc-----cccCCCCCcEEEEEeCCCCCCCcHHHHHH
Q 003363 716 DIPDWCYVESYGSKGKDSFTESPSVEDLTRF---------HSKSPI-----SHISKVKTPTIFLLGAQDLRVPVSNGLQY 781 (826)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~sp~-----~~~~~i~~PvLii~G~~D~~vp~~~~~~~ 781 (826)
...+... +. ....+....+ ...+|. ..+.+..+|+||+||+.|.++ .++.++
T Consensus 209 -------~~~~~~~----~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~~--~~~~~~ 274 (326)
T 3ga7_A 209 -------RRLFGGA----WD-GLTREDLDMYEKAYLRNDEDRESPWYCLFNNDLTRDVPPCFIASAEFDPLI--DDSRLL 274 (326)
T ss_dssp -------HHHCCCT----TT-TCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCSSCCCCEEEEEETTCTTH--HHHHHH
T ss_pred -------HhhhcCC----CC-CCCHHHHHHHHHHhCCCCCccCCcccCCCcchhhcCCCCEEEEecCcCcCH--HHHHHH
Confidence 0000000 00 0001111111 011221 233345679999999999998 688999
Q ss_pred HHHHHhCCCCEEEEEeCCCCCCCCCCC----CHHHHHHHHHHHHHHHc
Q 003363 782 ARALREKGVETKVIVFPNDVHGIERPQ----SDFESFLNIGLWFKKYC 825 (826)
Q Consensus 782 ~~~l~~~g~~~~~~~~p~~~H~~~~~~----~~~~~~~~i~~w~~~~l 825 (826)
+++|++.|+++++++|||++|++.... ...++++.+.+||+++|
T Consensus 275 ~~~l~~~g~~~~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~fl~~~l 322 (326)
T 3ga7_A 275 HQTLQAHQQPCEYKMYPGTLHAFLHYSRMMTIADDALQDGARFFMARM 322 (326)
T ss_dssp HHHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCcEEEEEeCCCccchhhhcCccHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999985322 34588899999999987
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=207.49 Aligned_cols=224 Identities=17% Similarity=0.268 Sum_probs=158.8
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-ccchHHHHHHHH-CCcEEEEECCCCCCCCchhhhhcCCCCCCcchH
Q 003363 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652 (826)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~~~~~~~la~-~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~ 652 (826)
.+.+++|.|+ ..++.|+||++|||++.... ..+...+..|+. .||.|+++|||+++++ .....+
T Consensus 66 ~i~~~~~~p~---~~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~-----------~~~~~~ 131 (322)
T 3fak_A 66 GCAAEWVRAP---GCQAGKAILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYRLAPEH-----------PFPAAV 131 (322)
T ss_dssp TEEEEEEECT---TCCTTCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTSEEEEECCCCTTTS-----------CTTHHH
T ss_pred CeEEEEEeCC---CCCCccEEEEEcCCccccCChHHHHHHHHHHHHhcCCEEEEEeCCCCCCC-----------CCCcHH
Confidence 3788899997 35678999999998865433 345556666665 6999999999986543 223458
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCc----eeEEEecCCccchhhhccCCCCCCchhhhhccC
Q 003363 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 728 (826)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~----~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 728 (826)
+|+.++++|+.++ .+|++||+|+|+|+||++++.++.+.++. ++++|+.+|+.++..... .+. .. ..
T Consensus 132 ~D~~~a~~~l~~~-~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~-----~~~--~~-~~ 202 (322)
T 3fak_A 132 EDGVAAYRWLLDQ-GFKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISPWADMTCTND-----SFK--TR-AE 202 (322)
T ss_dssp HHHHHHHHHHHHH-TCCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCT-----HHH--HT-TT
T ss_pred HHHHHHHHHHHHc-CCCCceEEEEEcCcCHHHHHHHHHHHHhcCCCCceEEEEECCEecCcCCCc-----CHH--Hh-Cc
Confidence 9999999999998 58999999999999999999999876654 999999999987532110 000 00 00
Q ss_pred cCCccCCCCCChh-hHHHH--------hhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 003363 729 KGKDSFTESPSVE-DLTRF--------HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 799 (826)
Q Consensus 729 ~~~~~~~~~~~~~-~~~~~--------~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~ 799 (826)
...+....... ....+ ...+|+...-+..+|+||+||+.|.++ .++..++++|++.|+++++++||+
T Consensus 203 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~g~~D~~~--~~~~~~~~~l~~~g~~~~~~~~~g 278 (322)
T 3fak_A 203 --ADPMVAPGGINKMAARYLNGADAKHPYASPNFANLKGLPPLLIHVGRDEVLL--DDSIKLDAKAKADGVKSTLEIWDD 278 (322)
T ss_dssp --TCCSCCSSHHHHHHHHHHTTSCTTCTTTCGGGSCCTTCCCEEEEEETTSTTH--HHHHHHHHHHHHTTCCEEEEEETT
T ss_pred --cCcccCHHHHHHHHHHhcCCCCCCCcccCCCcccccCCChHhEEEcCcCccH--HHHHHHHHHHHHcCCCEEEEEeCC
Confidence 00000000000 00111 123444222223369999999999875 788999999999999999999999
Q ss_pred CCCCCCC----CCCHHHHHHHHHHHHHHHc
Q 003363 800 DVHGIER----PQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 800 ~~H~~~~----~~~~~~~~~~i~~w~~~~l 825 (826)
++|++.. .+...+.++.+.+||+++|
T Consensus 279 ~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l 308 (322)
T 3fak_A 279 MIHVWHAFHPMLPEGKQAIVRVGEFMREQW 308 (322)
T ss_dssp CCTTGGGGTTTCHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 9998753 2334578899999999986
|
| >4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A | Back alignment and structure |
|---|
Probab=99.87 E-value=8e-22 Score=206.57 Aligned_cols=222 Identities=18% Similarity=0.187 Sum_probs=148.5
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (826)
+..+.||++||.+.+ ...|..+++.|+++||.|+++|+||.|.+.... .... ....++|+.++++++.+.
T Consensus 49 G~~~~VlllHG~~~s--~~~~~~la~~La~~Gy~Via~Dl~GhG~S~~~~---~~~~-~~~~~~d~~~~~~~l~~~---- 118 (281)
T 4fbl_A 49 GSRIGVLVSHGFTGS--PQSMRFLAEGFARAGYTVATPRLTGHGTTPAEM---AAST-ASDWTADIVAAMRWLEER---- 118 (281)
T ss_dssp CSSEEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEECCCTTSSSCHHHH---HTCC-HHHHHHHHHHHHHHHHHH----
T ss_pred CCCceEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEECCCCCCCCCccc---cCCC-HHHHHHHHHHHHHHHHhC----
Confidence 345669999996544 457888999999999999999999954432221 1111 112267888888888765
Q ss_pred CCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh-----ccCCCCCCch--hhhhccCcCCccC--CCCCCh
Q 003363 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-----VGTTDIPDWC--YVESYGSKGKDSF--TESPSV 740 (826)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~ 740 (826)
.++++|+||||||.+++.++.++|++++++|+.+|...+... ........+. ............+ ...+ .
T Consensus 119 ~~~v~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 197 (281)
T 4fbl_A 119 CDVLFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRMESPDLAALAFNPDAPAELPGIGSDIKAEGVKELAYPVTP-V 197 (281)
T ss_dssp CSEEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCSCCCCHHHHHHHTCTTCCSEEECCCCCCSSTTCCCCCCSEEE-G
T ss_pred CCeEEEEEECcchHHHHHHHHhCchhhhhhhcccchhcccchhhHHHHHhHhhHHhhhcchhhhhhHHHHHhhhccCc-h
Confidence 368999999999999999999999999999999987543210 0000000000 0000000000000 0000 0
Q ss_pred hhHHHHhh--cCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 003363 741 EDLTRFHS--KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIG 818 (826)
Q Consensus 741 ~~~~~~~~--~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~ 818 (826)
.....+.. ......+.++++|+|+++|++|..+|+++++.+++.+.. .+++++++|++||.+.......++.+.|.
T Consensus 198 ~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~l~~--~~~~l~~~~~~gH~~~~e~~~e~v~~~i~ 275 (281)
T 4fbl_A 198 PAIKHLITIGAVAEMLLPRVKCPALIIQSREDHVVPPHNGELIYNGIGS--TEKELLWLENSYHVATLDNDKELILERSL 275 (281)
T ss_dssp GGHHHHHHHHHHHHHHGGGCCSCEEEEEESSCSSSCTHHHHHHHHHCCC--SSEEEEEESSCCSCGGGSTTHHHHHHHHH
T ss_pred HHHHHHHHhhhhccccccccCCCEEEEEeCCCCCcCHHHHHHHHHhCCC--CCcEEEEECCCCCcCccccCHHHHHHHHH
Confidence 11111110 011234678999999999999999999999999988753 46899999999998766655668899999
Q ss_pred HHHHHH
Q 003363 819 LWFKKY 824 (826)
Q Consensus 819 ~w~~~~ 824 (826)
+||++|
T Consensus 276 ~FL~~H 281 (281)
T 4fbl_A 276 AFIRKH 281 (281)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 999987
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=206.48 Aligned_cols=241 Identities=17% Similarity=0.157 Sum_probs=165.4
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCC--
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP-- 644 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~-- 644 (826)
.+...+|..+.++++.|++ .++.|+||++||+++.. ...+. ....|+++||.|+++|+||.++++........
T Consensus 60 ~~~~~~g~~i~~~~~~P~~---~~~~p~vv~~HG~~~~~-~~~~~-~~~~l~~~g~~v~~~d~rg~g~s~~~~~~~~~~~ 134 (318)
T 1l7a_A 60 TYKSFGNARITGWYAVPDK---EGPHPAIVKYHGYNASY-DGEIH-EMVNWALHGYATFGMLVRGQQRSEDTSISPHGHA 134 (318)
T ss_dssp EEEEGGGEEEEEEEEEESS---CSCEEEEEEECCTTCCS-GGGHH-HHHHHHHTTCEEEEECCTTTSSSCCCCCCSSCCS
T ss_pred EEEccCCCEEEEEEEeeCC---CCCccEEEEEcCCCCCC-CCCcc-cccchhhCCcEEEEecCCCCCCCCCcccccCCcc
Confidence 3444467889999999974 56789999999987540 22333 33477889999999999997765433210000
Q ss_pred -----CCC-------CcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccc-hhhh
Q 003363 645 -----GKV-------GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN-LALM 711 (826)
Q Consensus 645 -----~~~-------~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~-~~~~ 711 (826)
... ....++|+.++++++.++..+|.++|+|+|||+||.+++.++..+|+ ++++|+.+|... +...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~-~~~~v~~~p~~~~~~~~ 213 (318)
T 1l7a_A 135 LGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAVADYPYLSNFERA 213 (318)
T ss_dssp SSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSC-CSEEEEESCCSCCHHHH
T ss_pred ccceeccCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccceeEEEecChHHHHHHHHhccCCC-ccEEEecCCcccCHHHH
Confidence 000 02347899999999999877888999999999999999999999886 677777888543 3222
Q ss_pred ccCCCCCCchhhhhccCcCCccCCCCC--ChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCC
Q 003363 712 VGTTDIPDWCYVESYGSKGKDSFTESP--SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG 789 (826)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g 789 (826)
........|.....+.. .. ..+ ...........++...+.++++|+|+++|+.|..+|++++.++++++..
T Consensus 214 ~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~g~~D~~~~~~~~~~~~~~l~~-- 286 (318)
T 1l7a_A 214 IDVALEQPYLEINSFFR----RN-GSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPSTVFAAYNHLET-- 286 (318)
T ss_dssp HHHCCSTTTTHHHHHHH----HS-CCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHHHHCCS--
T ss_pred HhcCCcCccHHHHHHHh----cc-CCcccHHHHHHhhccccHHHHHhhCCCCEEEEeccCCCCCCcccHHHHHhhcCC--
Confidence 11111111111100000 00 000 0111222334456677888899999999999999999999999888865
Q ss_pred CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 790 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 790 ~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
+++++++++++|.. ..+....+.+||+++|+
T Consensus 287 -~~~~~~~~~~~H~~-----~~~~~~~~~~fl~~~l~ 317 (318)
T 1l7a_A 287 -KKELKVYRYFGHEY-----IPAFQTEKLAFFKQILK 317 (318)
T ss_dssp -SEEEEEETTCCSSC-----CHHHHHHHHHHHHHHHC
T ss_pred -CeeEEEccCCCCCC-----cchhHHHHHHHHHHHhC
Confidence 48999999999983 24678999999999875
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=212.04 Aligned_cols=241 Identities=14% Similarity=0.148 Sum_probs=167.1
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCC--
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP-- 644 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~-- 644 (826)
.+...+|..++++++.|++ .++.|+||++||++... ..|.... .++++||.|+++|+||.++++........
T Consensus 86 ~~~~~~g~~l~~~~~~P~~---~~~~p~vv~~HG~g~~~--~~~~~~~-~~~~~G~~v~~~D~rG~g~s~~~~~~~~~~~ 159 (346)
T 3fcy_A 86 YFTGVRGARIHAKYIKPKT---EGKHPALIRFHGYSSNS--GDWNDKL-NYVAAGFTVVAMDVRGQGGQSQDVGGVTGNT 159 (346)
T ss_dssp EEECGGGCEEEEEEEEESC---SSCEEEEEEECCTTCCS--CCSGGGH-HHHTTTCEEEEECCTTSSSSCCCCCCCSSCC
T ss_pred EEEcCCCCEEEEEEEecCC---CCCcCEEEEECCCCCCC--CChhhhh-HHHhCCcEEEEEcCCCCCCCCCCCcccCCCC
Confidence 4555578899999999984 57789999999987663 3344333 56789999999999997665433211000
Q ss_pred --C--------C----CCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccc-hh
Q 003363 645 --G--------K----VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN-LA 709 (826)
Q Consensus 645 --~--------~----~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~-~~ 709 (826)
+ . .....++|+.++++++.....+|.++|+|+|||+||.+++.++.++|+ ++++|+.+|... +.
T Consensus 160 ~~~~~~~g~~~~~~~~~~~~~~~D~~~a~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p~-v~~~vl~~p~~~~~~ 238 (346)
T 3fcy_A 160 LNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPR-VRKVVSEYPFLSDYK 238 (346)
T ss_dssp SBCSSSTTTTSCGGGCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTT-CCEEEEESCSSCCHH
T ss_pred cCcceeccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcEEEEEcCHHHHHHHHHHHhCcc-ccEEEECCCcccCHH
Confidence 0 0 001125899999999998877889999999999999999999999998 999999998653 22
Q ss_pred hhccCC-CCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhC
Q 003363 710 LMVGTT-DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 788 (826)
Q Consensus 710 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~ 788 (826)
...... ....+.....+.... .............+...++...+.++++|+|+++|+.|..+|++.+.++++++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~~~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~- 315 (346)
T 3fcy_A 239 RVWDLDLAKNAYQEITDYFRLF--DPRHERENEVFTKLGYIDVKNLAKRIKGDVLMCVGLMDQVCPPSTVFAAYNNIQS- 315 (346)
T ss_dssp HHHHTTCCCGGGHHHHHHHHHH--CTTCTTHHHHHHHHGGGCHHHHGGGCCSEEEEEEETTCSSSCHHHHHHHHTTCCS-
T ss_pred HHhhccccccchHHHHHHHHhc--CCCcchHHHHHHHhCcccHHHHHHhcCCCEEEEeeCCCCcCCHHHHHHHHHhcCC-
Confidence 211111 111111000000000 0000111222334445566677889999999999999999999999888887754
Q ss_pred CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 789 GVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 789 g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
+++++++|+++|.+. .++...+.+||++.
T Consensus 316 --~~~~~~~~~~gH~~~-----~~~~~~i~~fl~~l 344 (346)
T 3fcy_A 316 --KKDIKVYPDYGHEPM-----RGFGDLAMQFMLEL 344 (346)
T ss_dssp --SEEEEEETTCCSSCC-----TTHHHHHHHHHHTT
T ss_pred --CcEEEEeCCCCCcCH-----HHHHHHHHHHHHHh
Confidence 689999999999986 35678899999864
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-22 Score=211.95 Aligned_cols=228 Identities=17% Similarity=0.205 Sum_probs=164.6
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcch
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~ 651 (826)
+|..+.++++.|. +.|+||++||++.. ...|...+..|+++||.|+++|+||.+. +..... .......
T Consensus 14 ~g~~l~~~~~~p~------~~p~vv~~HG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G~g~---s~~~~~-~~~~~~~ 81 (290)
T 3ksr_A 14 GQDELSGTLLTPT------GMPGVLFVHGWGGS--QHHSLVRAREAVGLGCICMTFDLRGHEG---YASMRQ-SVTRAQN 81 (290)
T ss_dssp TTEEEEEEEEEEE------SEEEEEEECCTTCC--TTTTHHHHHHHHTTTCEEECCCCTTSGG---GGGGTT-TCBHHHH
T ss_pred CCeEEEEEEecCC------CCcEEEEeCCCCCC--cCcHHHHHHHHHHCCCEEEEeecCCCCC---CCCCcc-cccHHHH
Confidence 5789999999985 67999999998765 4567788899999999999999999543 322111 1112234
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCC
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 731 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (826)
.+|+.++++++.+++.+|.++|+|+|||+||++++.++.++| ++++++.+|........ ..+...... ....
T Consensus 82 ~~d~~~~i~~l~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~~--~~~~~l~~p~~~~~~~~---~~~~~~~~~---~~~~ 153 (290)
T 3ksr_A 82 LDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERP--VEWLALRSPALYKDAHW---DQPKVSLNA---DPDL 153 (290)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHTTTSC--CSEEEEESCCCCCSSCT---TSBHHHHHH---STTH
T ss_pred HHHHHHHHHHHHhcCCCCccceEEEEEchHHHHHHHHHHhCC--CCEEEEeCcchhhhhhh---hcccccccC---Chhh
Confidence 689999999999887788899999999999999999999887 77888888865422110 000000000 0000
Q ss_pred ccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHH
Q 003363 732 DSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 811 (826)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~ 811 (826)
..+..... .....++...+.++++|+|+++|++|..++++++..+++.++..+ +++++++++++|.+.......
T Consensus 154 ~~~~~~~~-----~~~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~gH~~~~~~~~~ 227 (290)
T 3ksr_A 154 MDYRRRAL-----APGDNLALAACAQYKGDVLLVEAENDVIVPHPVMRNYADAFTNAR-SLTSRVIAGADHALSVKEHQQ 227 (290)
T ss_dssp HHHTTSCC-----CGGGCHHHHHHHHCCSEEEEEEETTCSSSCHHHHHHHHHHTTTSS-EEEEEEETTCCTTCCSHHHHH
T ss_pred hhhhhhhh-----hhccccHHHHHHhcCCCeEEEEecCCcccChHHHHHHHHHhccCC-CceEEEcCCCCCCCCcchHHH
Confidence 00000000 001122234456788999999999999999999999999998765 789999999999887665666
Q ss_pred HHHHHHHHHHHHHc
Q 003363 812 ESFLNIGLWFKKYC 825 (826)
Q Consensus 812 ~~~~~i~~w~~~~l 825 (826)
++...+.+||++++
T Consensus 228 ~~~~~i~~fl~~~~ 241 (290)
T 3ksr_A 228 EYTRALIDWLTEMV 241 (290)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 88899999999875
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.3e-20 Score=219.25 Aligned_cols=311 Identities=13% Similarity=0.083 Sum_probs=200.8
Q ss_pred eEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecC-Ccc----------e---------ecccE
Q 003363 98 AWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAP-FPV----------E---------MTGAS 157 (826)
Q Consensus 98 ~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~-~~~----------~---------~~~~~ 157 (826)
....+.+||||++|+|..... .+.....||++++.+ ++.++++... ... . ...+.
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d---~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKD---SDRNQLDLWSYDIGS--GQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCS---SCTTEEEEEEEETTT--CCEEEEECGGGTC--------------------CCEESC
T ss_pred CCCCceEecCCCEEEEEeccC---CCCcccEEEEEECCC--CceeEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 345667799999999976421 112345788887633 3444444321 000 0 01267
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEe-cCC---ceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 158 AVVPSPSGSKLLVVRNPENESPIQFELW-SQS---QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 158 ~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~---~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
.++|||||++|+|... .+++.++ .++ ..++++...... ..++|||||++|||.+.
T Consensus 113 ~~~~SpDg~~l~~~~~-----~~i~~~d~~~~~~~~~~~l~~~~~~~----------~~~~~SPDG~~la~~~~------ 171 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLG-----GELYLYDLKQEGKAAVRQLTHGEGFA----------TDAKLSPKGGFVSFIRG------ 171 (741)
T ss_dssp CCEECTTSSEEEEEET-----TEEEEEESSSCSTTSCCBCCCSSSCE----------EEEEECTTSSEEEEEET------
T ss_pred eeEECCCCCEEEEEeC-----CcEEEEECCCCCcceEEEcccCCccc----------ccccCCCCCCEEEEEeC------
Confidence 8999999999999876 2466555 444 444443322222 78999999999999742
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCc-----------------
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLS----------------- 296 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~----------------- 296 (826)
.+|++||+++++.++++ .....
T Consensus 172 ---------------------------------------~~i~~~d~~~g~~~~~~--~~~~~~~~~g~~~~v~~~~~~~ 210 (741)
T 2ecf_A 172 ---------------------------------------RNLWVIDLASGRQMQLT--ADGSTTIGNGIAEFVADEEMDR 210 (741)
T ss_dssp ---------------------------------------TEEEEEETTTTEEEECC--CCCCSSEEESCCCHHHHHHSCC
T ss_pred ---------------------------------------CcEEEEecCCCCEEEec--cCCccceeccccceeeeecccc
Confidence 37999999999988883 22211
Q ss_pred cceEEEeeCCCCCccEEEEEeecCccee--------------eeeeee----ccCCCceEEEEcccccchhhhhhhhcCC
Q 003363 297 VGQVVWAPLNEGLHQYLVFVGWSSETRK--------------LGIKYC----YNRPCALYAVRVSLYKSEASELELKESS 358 (826)
Q Consensus 297 ~~~~~wSPDg~~~~~~lvf~~~~~~~~~--------------~g~~~~----~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 358 (826)
+..++|||||+. |+|.+....... ..+.|. .+....|+++|+
T Consensus 211 ~~~~~~SpDg~~----l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~---------------- 270 (741)
T 2ecf_A 211 HTGYWWAPDDSA----IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP---------------- 270 (741)
T ss_dssp CCSEEECTTSSC----EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS----------------
T ss_pred ccceEECCCCCE----EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC----------------
Confidence 367999999999 999875432110 001110 012237889998
Q ss_pred CCC-CcceecCC---CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccC
Q 003363 359 SED-LPVVNLTE---SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAE 434 (826)
Q Consensus 359 ~~~-~~~~~Lt~---~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 434 (826)
.+ ++.+.+.. +...+..+.| |||++|++.+.... ....+|+++|+.+++.+.+.....
T Consensus 271 -~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~------~~~~~i~~~d~~~g~~~~~~~~~~---------- 332 (741)
T 2ecf_A 271 -AEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRD------QKKLDLVEVTLASNQQRVLAHETS---------- 332 (741)
T ss_dssp -STTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETT------SSEEEEEEEETTTCCEEEEEEEEC----------
T ss_pred -CCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEeccc------CCeEEEEEEECCCCceEEEEEcCC----------
Confidence 66 66666653 3455778999 99999999886532 234689999998866533221110
Q ss_pred CCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeE-EEeecCCEEEEEEeCCCC-C
Q 003363 435 GDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWS-LLTLDGDNIIAVSSSPVD-V 512 (826)
Q Consensus 435 ~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~-~~s~dg~~l~~~~s~~~~-p 512 (826)
.. |......+.|+|||+ +++++..++..+||.+|+.++ .+.|+.....+... .|+++++.+++..+.... .
T Consensus 333 ~~-----~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~ 405 (741)
T 2ecf_A 333 PT-----WVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARE 405 (741)
T ss_dssp SS-----CCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTC
T ss_pred CC-----cCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCce
Confidence 00 111234788999999 767777777889999998777 88888776655444 599999998887764321 3
Q ss_pred CeEEEEee
Q 003363 513 PQVKYGYF 520 (826)
Q Consensus 513 ~~l~~~~~ 520 (826)
..||..++
T Consensus 406 ~~l~~~~~ 413 (741)
T 2ecf_A 406 SQIYAVPL 413 (741)
T ss_dssp BEEEEEET
T ss_pred EEEEEEEc
Confidence 34666554
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.6e-21 Score=208.28 Aligned_cols=247 Identities=13% Similarity=0.083 Sum_probs=166.3
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch-HHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCC
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 645 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~-~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~ 645 (826)
.+...+|..++++++.|.+ .+.++.|+||++||++.. ...+. ..+..|+++||.|+++|+||.+...... ...
T Consensus 72 ~~~~~~g~~~~~~~~~p~~-~~~~~~p~vv~~hG~~~~--~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~---~~~ 145 (367)
T 2hdw_A 72 TFANRYGITLAADLYLPKN-RGGDRLPAIVIGGPFGAV--KEQSSGLYAQTMAERGFVTLAFDPSYTGESGGQP---RNV 145 (367)
T ss_dssp EEECTTSCEEEEEEEEESS-CCSSCEEEEEEECCTTCC--TTSHHHHHHHHHHHTTCEEEEECCTTSTTSCCSS---SSC
T ss_pred EEecCCCCEEEEEEEeCCC-CCCCCCCEEEEECCCCCc--chhhHHHHHHHHHHCCCEEEEECCCCcCCCCCcC---ccc
Confidence 3455568899999999985 235778999999997754 33444 3678899999999999999965432211 111
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhc-cCCC--------
Q 003363 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV-GTTD-------- 716 (826)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~-~~~~-------- 716 (826)
.......+|+.++++++.++..+|.++|+|+|||+||.+++.++.++| .++++|+.+|........ +...
T Consensus 146 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p-~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~ 224 (367)
T 2hdw_A 146 ASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDK-RVKAVVTSTMYDMTRVMSKGYNDSVTLEQRT 224 (367)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCCCHHHHHHHTTTTCCCHHHHH
T ss_pred cchhhHHHHHHHHHHHHHhCcCCCcCcEEEEEECHHHHHHHHHHhcCC-CccEEEEeccccccHHHhhhhccccchHHHH
Confidence 112346799999999999987788899999999999999999999988 589999998863211000 0000
Q ss_pred ------------------------CC---C---ch---hhhhccCcC--Ccc---CCCCCChhhHHHHhhcCcccccCCC
Q 003363 717 ------------------------IP---D---WC---YVESYGSKG--KDS---FTESPSVEDLTRFHSKSPISHISKV 758 (826)
Q Consensus 717 ------------------------~~---~---~~---~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~sp~~~~~~i 758 (826)
.+ . .. ....+.... ... ............+...++...+.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 304 (367)
T 2hdw_A 225 RTLEQLGQQRWKDAESGTPAYQPPYNELKGGEAQFLVDYHDYYMTPRGYHPRAVNSGNAWTMTTPLSFMNMPILTYIKEI 304 (367)
T ss_dssp HHHHHHHHHHHHHHHHTSCCBCSCTTCCCSCCCHHHHHHHHHHTSTTTCCTTCSTTTCCCBTTTHHHHTTSCSCTTGGGG
T ss_pred HHHHHHHHHHHHHhccCCceeecCCCccccccccccCCccceeecccccCcccccccchhhhhhHHHhcCCChhHhHHhh
Confidence 00 0 00 000000000 000 0000001223445566777888899
Q ss_pred C-CcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 759 K-TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 759 ~-~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
+ +|+|+++|++|. ++.++.+++++ .+.+++++++|+++|..........+.+.+.+||+++|
T Consensus 305 ~~~PvLii~G~~D~--~~~~~~~~~~~---~~~~~~~~~~~g~gH~~~~~~~~~~~~~~i~~fl~~~l 367 (367)
T 2hdw_A 305 SPRPILLIHGERAH--SRYFSETAYAA---AAEPKELLIVPGASHVDLYDRLDRIPFDRIAGFFDEHL 367 (367)
T ss_dssp TTSCEEEEEETTCT--THHHHHHHHHH---SCSSEEEEEETTCCTTHHHHCTTTSCHHHHHHHHHHHC
T ss_pred cCCceEEEecCCCC--CHHHHHHHHHh---CCCCeeEEEeCCCCeeeeecCchhHHHHHHHHHHHhhC
Confidence 9 999999999998 77888777766 56789999999999974322222126789999999886
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-20 Score=185.68 Aligned_cols=195 Identities=13% Similarity=0.153 Sum_probs=148.1
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCC---CCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcC
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP---HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 643 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~---~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~ 643 (826)
.+...+| .++++++.|. ..++.|+||++||++ .......+...+..|+++||.|+++|+||.+.....
T Consensus 10 ~~~~~~g-~l~~~~~~p~---~~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~----- 80 (208)
T 3trd_A 10 LIQGPVG-QLEVMITRPK---GIEKSVTGIICHPHPLHGGTMNNKVVTTLAKALDELGLKTVRFNFRGVGKSQGR----- 80 (208)
T ss_dssp EEECSSS-EEEEEEECCS---SCCCSEEEEEECSCGGGTCCTTCHHHHHHHHHHHHTTCEEEEECCTTSTTCCSC-----
T ss_pred EEECCCc-eEEEEEEcCC---CCCCCCEEEEEcCCCCCCCccCCchHHHHHHHHHHCCCEEEEEecCCCCCCCCC-----
Confidence 3445567 8999999886 345789999999953 222233466788899999999999999995543221
Q ss_pred CCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhh
Q 003363 644 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYV 723 (826)
Q Consensus 644 ~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~ 723 (826)
........+|+.++++++.++ .+.++|+++|||+||.+++.++ .+| +++++|+.+|..+. +
T Consensus 81 -~~~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a-~~~-~v~~~v~~~~~~~~-----------~--- 141 (208)
T 3trd_A 81 -YDNGVGEVEDLKAVLRWVEHH--WSQDDIWLAGFSFGAYISAKVA-YDQ-KVAQLISVAPPVFY-----------E--- 141 (208)
T ss_dssp -CCTTTHHHHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHH-HHS-CCSEEEEESCCTTS-----------G---
T ss_pred -ccchHHHHHHHHHHHHHHHHh--CCCCeEEEEEeCHHHHHHHHHh-ccC-CccEEEEecccccc-----------C---
Confidence 122334589999999999987 4558999999999999999999 667 89999998886510 0
Q ss_pred hhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCC
Q 003363 724 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803 (826)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~ 803 (826)
....+..+++|+|+++|++|..+|++.+.++++++... ++++++++++|.
T Consensus 142 ---------------------------~~~~~~~~~~p~l~i~g~~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~H~ 191 (208)
T 3trd_A 142 ---------------------------GFASLTQMASPWLIVQGDQDEVVPFEQVKAFVNQISSP---VEFVVMSGASHF 191 (208)
T ss_dssp ---------------------------GGTTCCSCCSCEEEEEETTCSSSCHHHHHHHHHHSSSC---CEEEEETTCCSS
T ss_pred ---------------------------CchhhhhcCCCEEEEECCCCCCCCHHHHHHHHHHccCc---eEEEEeCCCCCc
Confidence 01223445799999999999999999998888877653 899999999998
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 003363 804 IERPQSDFESFLNIGLWF 821 (826)
Q Consensus 804 ~~~~~~~~~~~~~i~~w~ 821 (826)
+... ..+..+.+.+||
T Consensus 192 ~~~~--~~~~~~~i~~fl 207 (208)
T 3trd_A 192 FHGR--LIELRELLVRNL 207 (208)
T ss_dssp CTTC--HHHHHHHHHHHH
T ss_pred cccc--HHHHHHHHHHHh
Confidence 8743 246666677666
|
| >2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-20 Score=202.74 Aligned_cols=231 Identities=16% Similarity=0.172 Sum_probs=159.0
Q ss_pred eeEEEEEEecCCCC--------------CCCCCcEEEEEcCCCCCCCCc---cchHHHHHHH-HCCcEEEEECCCCCCCC
Q 003363 574 KPFEAIFVSSSHKK--------------DCSCDPLIVVLHGGPHSVSLS---SYSKSLAFLS-SVGYSLLIVNYRGSLGF 635 (826)
Q Consensus 574 ~~l~~~~~~P~~~~--------------~~~~~P~vv~~HGg~~~~~~~---~~~~~~~~la-~~G~~Vl~~d~rG~~g~ 635 (826)
..+.+.+|.|++.. ..++.|+||++|||++..... .|...+..|+ +.||.|+++||||.+++
T Consensus 81 ~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~p~vv~~HGgg~~~g~~~~~~~~~~~~~la~~~g~~vv~~d~rg~~~~ 160 (351)
T 2zsh_A 81 INLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPEN 160 (351)
T ss_dssp TTEEEEEEEECCTTCSSCCCTTSTTCCCCSSSCEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTSEEEEECCCCTTTS
T ss_pred CCeEEEEEecCCccccccccccccccccCCCCceEEEEECCCcCcCCCCcchhHHHHHHHHHHHcCCEEEEecCCCCCCC
Confidence 34777888887542 246789999999987644332 2667788888 78999999999996543
Q ss_pred chhhhhcCCCCCCcchHHHHHHHHHHHHHcC----CCCCC-cEEEEEecchHHHHHHHHHhCCC---ceeEEEecCCccc
Q 003363 636 GEEALQSLPGKVGSQDVNDVLTAIDHVIDMG----LANPS-KVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCN 707 (826)
Q Consensus 636 G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~----~~d~~-rv~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~p~~~ 707 (826)
. ....++|+.++++|+.++. .+|.+ +|+|+|||+||.+++.++.++|+ +++++|+.+|+.+
T Consensus 161 ~-----------~~~~~~D~~~~~~~l~~~~~~~~~~d~~~~i~l~G~S~GG~la~~~a~~~~~~~~~v~~~vl~~p~~~ 229 (351)
T 2zsh_A 161 P-----------YPCAYDDGWIALNWVNSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGIDVLGNILLNPMFG 229 (351)
T ss_dssp C-----------TTHHHHHHHHHHHHHHTCGGGCCTTTSSCEEEEEEETHHHHHHHHHHHHHHTTTCCCCEEEEESCCCC
T ss_pred C-----------CchhHHHHHHHHHHHHhCchhhcCCCCCCcEEEEEeCcCHHHHHHHHHHhhccCCCeeEEEEECCccC
Confidence 1 2245899999999999864 47889 99999999999999999998888 8999999999875
Q ss_pred hhhhccC----CCCC--CchhhhhccCcCCccCCCCCChhhHHHHhhcCcc----cccCCCCC-cEEEEEeCCCCCCCcH
Q 003363 708 LALMVGT----TDIP--DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPI----SHISKVKT-PTIFLLGAQDLRVPVS 776 (826)
Q Consensus 708 ~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~----~~~~~i~~-PvLii~G~~D~~vp~~ 776 (826)
....... ...+ .......+.. .+...... ......+|. ..+.++++ |+|+++|++|..++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~l~~i~~pP~Lii~G~~D~~~~-- 300 (351)
T 2zsh_A 230 GNERTESEKSLDGKYFVTVRDRDWYWK----AFLPEGED---REHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRD-- 300 (351)
T ss_dssp CSSCCHHHHHHTTTSSCCHHHHHHHHH----HHSCTTCC---TTSTTTCTTSTTSCCCTTCCCCEEEEEEETTSTTHH--
T ss_pred CCcCChhhhhcCCCcccCHHHHHHHHH----HhCCCCCC---CCCcccCCCCCCccchhhCCCCCEEEEEcCCCcchH--
Confidence 3211000 0000 0000000000 00000000 000011221 33455565 99999999999875
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCCCCCCCC---CCCHHHHHHHHHHHHHHH
Q 003363 777 NGLQYARALREKGVETKVIVFPNDVHGIER---PQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 777 ~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~---~~~~~~~~~~i~~w~~~~ 824 (826)
++..++++|++.|.+++++++++++|.+.. .+...++++.+.+||+++
T Consensus 301 ~~~~~~~~l~~~g~~~~~~~~~g~gH~~~~~~~~~~~~~~~~~i~~Fl~~~ 351 (351)
T 2zsh_A 301 WQLAYAEGLKKAGQEVKLMHLEKATVGFYLLPNNNHFHNVMDEISAFVNAE 351 (351)
T ss_dssp HHHHHHHHHHHTTCCEEEEEETTCCTTTTSSSCSHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCCCEEEEEECCCcEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 678899999999999999999999998865 244557888999999764
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=225.60 Aligned_cols=254 Identities=14% Similarity=0.160 Sum_probs=173.5
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-----CCccchH-HH---HHHHHCCcEEEEECCCCCCCCch
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-----SLSSYSK-SL---AFLSSVGYSLLIVNYRGSLGFGE 637 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~-----~~~~~~~-~~---~~la~~G~~Vl~~d~rG~~g~G~ 637 (826)
.+...||..++++++.|++ .+++|+||++||..... ....|.. .. ++|+++||+|+.+|+||+++++.
T Consensus 29 ~i~~~DG~~L~~~~~~P~~---~~~~P~vl~~hgyg~~~~~~~~~~~~~~~~~~~~~~~la~~Gy~Vv~~D~RG~g~S~g 105 (615)
T 1mpx_A 29 MIPMRDGVKLHTVIVLPKG---AKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDVRGKYGSEG 105 (615)
T ss_dssp EEECTTSCEEEEEEEEETT---CCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEECTTSTTCCS
T ss_pred EEECCCCCEEEEEEEeCCC---CCCeeEEEEEcCCCCccccccccccccccccchhHHHHHhCCeEEEEECCCCCCCCCC
Confidence 4456678999999999974 36789999999844321 1112222 22 78999999999999999888776
Q ss_pred hhhhcCC-----CCCCcchHHHHHHHHHHHHHc-CCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccch-h-
Q 003363 638 EALQSLP-----GKVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-A- 709 (826)
Q Consensus 638 ~~~~~~~-----~~~~~~~~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~-~- 709 (826)
.+....+ ..++..+.+|+.++++||.++ +..| .||+++|+||||++++.+++.+|+.++++|+.+|+.++ .
T Consensus 106 ~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~~-~rv~l~G~S~GG~~al~~a~~~~~~l~a~v~~~~~~d~~~~ 184 (615)
T 1mpx_A 106 DYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESN-GKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMIDGWMG 184 (615)
T ss_dssp CCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTSCCTTEEEEEEESCCCCTTTT
T ss_pred ccccccccccccccccccHHHHHHHHHHHHHhcCCCCC-CeEEEEecCHHHHHHHHHhhcCCCceEEEEecCCccccccc
Confidence 5432211 112226899999999999998 7666 59999999999999999998889999999999999884 2
Q ss_pred hhc---cCCCCC--CchhhhhccCcC--------Cc----------------cC-C-CCCChh-------hHHHHhhcCc
Q 003363 710 LMV---GTTDIP--DWCYVESYGSKG--------KD----------------SF-T-ESPSVE-------DLTRFHSKSP 751 (826)
Q Consensus 710 ~~~---~~~~~~--~~~~~~~~~~~~--------~~----------------~~-~-~~~~~~-------~~~~~~~~sp 751 (826)
... +..... .|.+........ .. .+ . ..+.++ ..+.|...||
T Consensus 185 ~~~~~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~w~~~Sp 264 (615)
T 1mpx_A 185 DDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTEHAAYDAFWQEQAL 264 (615)
T ss_dssp SSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHHTCSSCHHHHTTCH
T ss_pred cccccCCeehhhhHHHHHHhhcccCCcccccccchhHHHHHhhcCCccchhhhhccccchHHHHHHhCCCcChhhhhcCh
Confidence 111 000000 011000000000 00 00 0 000000 1134567799
Q ss_pred ccccCC--CCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCC---EEEEEeCCCCCCCCC------------CCCH-HHH
Q 003363 752 ISHISK--VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVE---TKVIVFPNDVHGIER------------PQSD-FES 813 (826)
Q Consensus 752 ~~~~~~--i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~---~~~~~~p~~~H~~~~------------~~~~-~~~ 813 (826)
+.++++ |++|+|++||..|.+ +..++.+++++|+++|++ .++++.|. +|+... .+.. ...
T Consensus 265 ~~~~~~~~I~~P~Lii~G~~D~~-~~~~~~~~~~aL~~~g~p~~~~~lvigp~-~H~~~~~~~~~~~~~~f~~~~~~~~~ 342 (615)
T 1mpx_A 265 DKVMARTPLKVPTMWLQGLWDQE-DMWGAIHSYAAMEPRDKRNTLNYLVMGPW-RHSQVNYDGSALGALNFEGDTARQFR 342 (615)
T ss_dssp HHHHHTSCCCSCEEEEEETTCSS-CSSHHHHHHHHHGGGCTTSSSEEEEEESC-CTTGGGSCCSEETTEECSSCHHHHHH
T ss_pred hhhhhccCCCCCEEEeecccCcc-ccccHHHHHHHHHhhcCCCcCCEEEECCC-CCCCccccccccCccccCcccchhhh
Confidence 999999 999999999999998 889999999999998753 89999988 687511 1111 122
Q ss_pred HHHHHHHHHHHcC
Q 003363 814 FLNIGLWFKKYCK 826 (826)
Q Consensus 814 ~~~i~~w~~~~l~ 826 (826)
.+.+++||++|||
T Consensus 343 ~~~~~~wfd~~Lk 355 (615)
T 1mpx_A 343 HDVLRPFFDQYLV 355 (615)
T ss_dssp HHTHHHHHHHHHS
T ss_pred hhHHHHHHHHHhc
Confidence 5778999999986
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=207.87 Aligned_cols=313 Identities=13% Similarity=0.133 Sum_probs=202.3
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCe
Q 003363 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 180 (826)
Q Consensus 101 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 180 (826)
.+.+||||++|+|..... ....+|++++ .+++.++++.... .....+.|||||++|+|++... +
T Consensus 40 ~~~~SpdG~~l~~~~~~~------g~~~l~~~d~--~~~~~~~l~~~~~----~~~~~~~~spdg~~l~~~~~~~----~ 103 (396)
T 3c5m_A 40 QKCFTQDGKKLLFAGDFD------GNRNYYLLNL--ETQQAVQLTEGKG----DNTFGGFISTDERAFFYVKNEL----N 103 (396)
T ss_dssp SCCBCTTSCEEEEEECTT------SSCEEEEEET--TTTEEEECCCSSC----BCTTTCEECTTSSEEEEEETTT----E
T ss_pred cCcCCCCCCEEEEEEecC------CCceEEEEEC--CCCcEEEeecCCC----CccccceECCCCCEEEEEEcCC----c
Confidence 356799999999986542 3456787765 3445566654431 1123378999999999998754 5
Q ss_pred EEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCccee
Q 003363 181 QFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (826)
Q Consensus 181 ~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (826)
++.+. .+++.++++... .. |+|||++|+|.+...... .+.....|
T Consensus 104 l~~~d~~~~~~~~~~~~~-------------~~--~~~~g~~l~~~~~~~~~~-------------------~~~~~~~~ 149 (396)
T 3c5m_A 104 LMKVDLETLEEQVIYTVD-------------EE--WKGYGTWVANSDCTKLVG-------------------IEILKRDW 149 (396)
T ss_dssp EEEEETTTCCEEEEEECC-------------TT--EEEEEEEEECTTSSEEEE-------------------EEEEGGGC
T ss_pred EEEEECCCCCcEEEEecc-------------cc--cCCCCCEEEeccCCcccc-------------------cccccccc
Confidence 77776 556666655432 12 888888888864332100 00001122
Q ss_pred ecCCCccCC-----CccCceEEEEEccCCceEeccCCCCCCccceEEEee-CCCCCccEEEEEeecCcceeeeeeeeccC
Q 003363 260 EEDWGETYA-----GKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP-LNEGLHQYLVFVGWSSETRKLGIKYCYNR 333 (826)
Q Consensus 260 ~~d~g~~~~-----~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSP-Dg~~~~~~lvf~~~~~~~~~~g~~~~~~~ 333 (826)
+++...... ......|+++|+++++.+.+ ......+..+.||| ||+. |+|.+.... ...
T Consensus 150 spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~--~~~~~~~~~~~~sp~dg~~----l~~~~~~~~---------~~~ 214 (396)
T 3c5m_A 150 QPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI--HQDTAWLGHPIYRPFDDST----VGFCHEGPH---------DLV 214 (396)
T ss_dssp CCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE--EEESSCEEEEEEETTEEEE----EEEEECSCS---------SSC
T ss_pred CCCCcceeeeeeccCCCcceEEEEECCCCcEEee--ccCCcccccceECCCCCCE----EEEEecCCC---------CCC
Confidence 232111100 12457899999999998888 34445677899999 8998 999873111 112
Q ss_pred CCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCC--ccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeC
Q 003363 334 PCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI--SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 411 (826)
Q Consensus 334 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~--~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~ 411 (826)
...||.+|+ +++..+.++... ..+..+.|||||++|+|.+.+.. .....|+++|+
T Consensus 215 ~~~l~~~d~-----------------~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~------~~~~~l~~~d~ 271 (396)
T 3c5m_A 215 DARMWLVNE-----------------DGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKG------QTDRVIYKANP 271 (396)
T ss_dssp SCCCEEEET-----------------TSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETT------TCCEEEEEECT
T ss_pred CceEEEEEC-----------------CCCceeEeeccCCCccccceEECCCCCEEEEEecCCC------CccceEEEEEC
Confidence 257999998 677777777642 24677899999999999987641 11234999999
Q ss_pred CCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCcccc-CCCEEEEEEE-------------eCCeEEEEEEECCC
Q 003363 412 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS-DGCTMLLSSI-------------WGSSQVIISVNVSS 477 (826)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~-Dg~~l~~~~~-------------~~~~~~l~~vdl~t 477 (826)
.+++...+.. +++ . .+.|+| ||+.|++... ..+...||.+|+.+
T Consensus 272 ~~g~~~~l~~----------------~~~-----~-~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~ 329 (396)
T 3c5m_A 272 ETLENEEVMV----------------MPP-----C-SHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA 329 (396)
T ss_dssp TTCCEEEEEE----------------CCS-----E-EEEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred CCCCeEEeee----------------CCC-----C-CCCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence 8765432211 011 1 167999 9997665432 12457899999999
Q ss_pred CcEEEecCCCCC-----------eeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 003363 478 GELLRITPAESN-----------FSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 524 (826)
Q Consensus 478 g~~~~lt~~~~~-----------~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~ 524 (826)
++.++|+..... .....|++||+.|++..... ..++||++++.++.
T Consensus 330 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~-~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 330 KSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE-GVPAIYIADVPESY 386 (396)
T ss_dssp TBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT-SSCEEEEEECCTTC
T ss_pred CceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCC-CCceEEEEEEcccc
Confidence 998888765431 23457899999988887654 45679998876543
|
| >3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-20 Score=200.64 Aligned_cols=245 Identities=16% Similarity=0.163 Sum_probs=165.7
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCC
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~ 646 (826)
.+...+|..+.+.++.|. +.+.|+||++||++.. ...|...+..|+++||.|+++|+||.+..... .....
T Consensus 39 ~~~~~dg~~l~~~~~~p~----~~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~---~~~~~ 109 (342)
T 3hju_A 39 HLVNADGQYLFCRYWKPT----GTPKALIFVSHGAGEH--SGRYEELARMLMGLDLLVFAHDHVGHGQSEGE---RMVVS 109 (342)
T ss_dssp EEECTTSCEEEEEEECCS----SCCSEEEEEECCTTCC--GGGGHHHHHHHHTTTEEEEEECCTTSTTSCSS---TTCCS
T ss_pred eEEccCCeEEEEEEeCCC----CCCCcEEEEECCCCcc--cchHHHHHHHHHhCCCeEEEEcCCCCcCCCCc---CCCcC
Confidence 345667889999999885 3567999999997755 45788889999999999999999995443221 11111
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCc--hhhh
Q 003363 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDW--CYVE 724 (826)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~--~~~~ 724 (826)
.....++|+.++++++... .+.++|+|+|||+||.+++.++.++|++++++|+.+|........... .... ....
T Consensus 110 ~~~~~~~d~~~~l~~l~~~--~~~~~v~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~-~~~~~~~~~~ 186 (342)
T 3hju_A 110 DFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATT-FKVLAAKVLN 186 (342)
T ss_dssp CTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCSCCTTTTSH-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHh--CCCCcEEEEEeChHHHHHHHHHHhCccccceEEEECcccccchhhhhH-HHHHHHHHHH
Confidence 2223478999999999887 456799999999999999999999999999999999976532110000 0000 0000
Q ss_pred hccC----cCCccCCCCCChhhHHHHh---------------------hcCcccccCCCCCcEEEEEeCCCCCCCcHHHH
Q 003363 725 SYGS----KGKDSFTESPSVEDLTRFH---------------------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGL 779 (826)
Q Consensus 725 ~~~~----~~~~~~~~~~~~~~~~~~~---------------------~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~ 779 (826)
.+.. .................+. ..+....+.++++|+|+++|++|..+|++.+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~ 266 (342)
T 3hju_A 187 LVLPNLSLGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAY 266 (342)
T ss_dssp HHCTTCBCCCCCGGGSCSCHHHHHHHHTCTTCCCSCCBHHHHHHHHHHHHHHHHHGGGCCSCEEEEEETTCSSSCHHHHH
T ss_pred HhccccccCcccccccccchHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHhCCcCEEEEEeCCCcccChHHHH
Confidence 0000 0000000000011111110 01112456788999999999999999999999
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCCCCCCCCC--HHHHHHHHHHHHHHHc
Q 003363 780 QYARALREKGVETKVIVFPNDVHGIERPQS--DFESFLNIGLWFKKYC 825 (826)
Q Consensus 780 ~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~--~~~~~~~i~~w~~~~l 825 (826)
.+++.+.. ..+++++++++||.+..... ..+.+..+++||++++
T Consensus 267 ~~~~~~~~--~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (342)
T 3hju_A 267 LLMELAKS--QDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRT 312 (342)
T ss_dssp HHHHHCCC--SSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC--CCceEEEECCCCchhhcCChHHHHHHHHHHHHHHhccc
Confidence 99888763 25899999999998765433 4467788999999875
|
| >3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold, 2-arachidonyl-glycerol, M associated, hydrolase, hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A {Homo sapiens} PDB: 3jw8_A 3jwe_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-20 Score=193.86 Aligned_cols=240 Identities=15% Similarity=0.201 Sum_probs=164.0
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCC
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~ 646 (826)
.+...+|..++++++.|. +++.|+||++||.+.. ...|...+..|+++||.|+++|+||.+..... .....
T Consensus 21 ~~~~~~g~~l~~~~~~~~----~~~~~~vv~~hG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~---~~~~~ 91 (303)
T 3pe6_A 21 HLVNADGQYLFCRYWAPT----GTPKALIFVSHGAGEH--SGRYEELARMLMGLDLLVFAHDHVGHGQSEGE---RMVVS 91 (303)
T ss_dssp EEECTTSCEEEEEEECCS----SCCSEEEEEECCTTCC--GGGGHHHHHHHHHTTEEEEEECCTTSTTSCSS---TTCCS
T ss_pred eEecCCCeEEEEEEeccC----CCCCeEEEEECCCCch--hhHHHHHHHHHHhCCCcEEEeCCCCCCCCCCC---CCCCC
Confidence 345667889999999875 3567999999997655 45788889999999999999999995543221 11111
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhcc-----------CC
Q 003363 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-----------TT 715 (826)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~-----------~~ 715 (826)
.....++|+.++++++... .+.+++.|+|||+||.+++.++.++|++++++|+.+|......... ..
T Consensus 92 ~~~~~~~d~~~~l~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (303)
T 3pe6_A 92 DFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTFKVLAAKVLNS 169 (303)
T ss_dssp STHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCSSSBCHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhhc--cCCceEEEEEeCHHHHHHHHHHHhCcccccEEEEECccccCchhccHHHHHHHHHHHHH
Confidence 1223478889999988877 3457899999999999999999999999999999999764321100 00
Q ss_pred CCCCchhhhhccCcCCccCCCCCChhhHHHHh---------------------hcCcccccCCCCCcEEEEEeCCCCCCC
Q 003363 716 DIPDWCYVESYGSKGKDSFTESPSVEDLTRFH---------------------SKSPISHISKVKTPTIFLLGAQDLRVP 774 (826)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~sp~~~~~~i~~PvLii~G~~D~~vp 774 (826)
..+.... .. ...... .........+. .......+.++++|+|+++|++|..++
T Consensus 170 ~~~~~~~----~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~ 243 (303)
T 3pe6_A 170 VLPNLSS----GP-IDSSVL-SRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCD 243 (303)
T ss_dssp TCCSCCC----CC-CCGGGT-CSCHHHHHHHHTCTTSCCSCCCHHHHHHHHHHHHHHHHHGGGCCSCEEEEEETTCSSBC
T ss_pred hcccccC----Cc-cchhhh-hcchhHHHHhccCccccccchhhhhHHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCC
Confidence 0000000 00 000000 00001111110 001124567889999999999999999
Q ss_pred cHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCC--HHHHHHHHHHHHHHHc
Q 003363 775 VSNGLQYARALREKGVETKVIVFPNDVHGIERPQS--DFESFLNIGLWFKKYC 825 (826)
Q Consensus 775 ~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~--~~~~~~~i~~w~~~~l 825 (826)
++.+..+++.+.. ..+++++++++||.+..... ..+....+++||++++
T Consensus 244 ~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~p~~~~~~~~~~~~~l~~~~ 294 (303)
T 3pe6_A 244 SKGAYLLMELAKS--QDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRT 294 (303)
T ss_dssp HHHHHHHHHHCCC--SSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhccc--CCceEEEeCCCccceeccchHHHHHHHHHHHHHHhccC
Confidence 9999999888753 25899999999998765433 4467788999999876
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-21 Score=201.95 Aligned_cols=231 Identities=14% Similarity=0.121 Sum_probs=154.7
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHH---HHHHHHCCcEEEEECC--CCCCCCchhh-----
Q 003363 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKS---LAFLSSVGYSLLIVNY--RGSLGFGEEA----- 639 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~---~~~la~~G~~Vl~~d~--rG~~g~G~~~----- 639 (826)
...|.++...+|.|++++ .+++|+||++||++... ..+... .+.++++||.|+++|+ ||.++.|...
T Consensus 24 ~~~~~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~~--~~~~~~~~~~~~~~~~g~~vv~~d~~~rG~~~~~~~~~~~~g 100 (282)
T 3fcx_A 24 VELNCKMKFAVYLPPKAE-TGKCPALYWLSGLTCTE--QNFISKSGYHQSASEHGLVVIAPDTSPRGCNIKGEDESWDFG 100 (282)
T ss_dssp TTTTEEEEEEEEECGGGG-TSCEEEEEEECCTTCCS--HHHHHHSCCHHHHHHHTCEEEEECSCSSCCCC--------CC
T ss_pred hhcCCeeEEEEEcCCCCC-CCCCCEEEEEcCCCCCc--cchhhcchHHHHhhcCCeEEEEeccccCcccccccccccccc
Confidence 345778999999998643 36899999999987653 344333 5778899999999999 8876544321
Q ss_pred -----hhcCCC-CCC--cchHHHHH-HHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh
Q 003363 640 -----LQSLPG-KVG--SQDVNDVL-TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710 (826)
Q Consensus 640 -----~~~~~~-~~~--~~~~~D~~-~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~ 710 (826)
....+. .+. .....++. ++++++.+...+|++||+|+|+|+||++++.++.++|++|+++++.+|+.+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s~~~~~~~ 180 (282)
T 3fcx_A 101 TGAGFYVDATEDPWKTNYRMYSYVTEELPQLINANFPVDPQRMSIFGHSMGGHGALICALKNPGKYKSVSAFAPICNPVL 180 (282)
T ss_dssp CCCCTTCBCCSTTHHHHCBHHHHHHTHHHHHHHHHSSEEEEEEEEEEETHHHHHHHHHHHTSTTTSSCEEEESCCCCGGG
T ss_pred CCcccccccCcccccchhhHHHHHHHHHHHHHHHHcCCCccceEEEEECchHHHHHHHHHhCcccceEEEEeCCccCccc
Confidence 000000 000 01123333 445555545558889999999999999999999999999999999999876432
Q ss_pred hccCCCCCCch---hhhhccCcCCccCCCCCChhhHHHHhhcCccccc---CCCCCcEEEEEeCCCCCCCcHH--HHHHH
Q 003363 711 MVGTTDIPDWC---YVESYGSKGKDSFTESPSVEDLTRFHSKSPISHI---SKVKTPTIFLLGAQDLRVPVSN--GLQYA 782 (826)
Q Consensus 711 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~---~~i~~PvLii~G~~D~~vp~~~--~~~~~ 782 (826)
. .|. +...++. ....+...+|...+ ..+++|+|++||+.|..+|..+ +++++
T Consensus 181 ~-------~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~ 240 (282)
T 3fcx_A 181 C-------PWGKKAFSGYLGT-------------DQSKWKAYDATHLVKSYPGSQLDILIDQGKDDQFLLDGQLLPDNFI 240 (282)
T ss_dssp S-------HHHHHHHHHHHC----------------CCGGGGCHHHHHTTCC---CCEEEEEETTCHHHHTTSSCHHHHH
T ss_pred C-------chhHHHHHHhcCC-------------chhhhhhcCHHHHHHhcccCCCcEEEEcCCCCcccccchhhHHHHH
Confidence 1 111 0000110 00112233444333 3447999999999999986655 56899
Q ss_pred HHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 783 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 783 ~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
++|++.|++++++++|+++|.+.. ........+.|+.++|+
T Consensus 241 ~~l~~~g~~~~~~~~~g~~H~~~~---~~~~~~~~~~~~~~~l~ 281 (282)
T 3fcx_A 241 AACTEKKIPVVFRLQEDYDHSYYF---IATFITDHIRHHAKYLN 281 (282)
T ss_dssp HHHHHTTCCEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCceEEEECCCCCcCHHH---HHhhhHHHHHHHHHhhc
Confidence 999999999999999999998742 23456778889988875
|
| >2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=219.70 Aligned_cols=254 Identities=14% Similarity=0.188 Sum_probs=174.3
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCC-----CC-CccchHH---H-HHHHHCCcEEEEECCCCCCCCc
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHS-----VS-LSSYSKS---L-AFLSSVGYSLLIVNYRGSLGFG 636 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~-----~~-~~~~~~~---~-~~la~~G~~Vl~~d~rG~~g~G 636 (826)
.+...||..|++++|.|++ .+++|+||++||.... .. ...|... . ++|+++||+|+.+|+||+++++
T Consensus 41 ~i~~~DG~~L~~~l~~P~~---~~~~PvIl~~hpyg~~~~~~~~~~~~~~~~~~~~~~~~la~~GyaVv~~D~RG~g~S~ 117 (652)
T 2b9v_A 41 MVPMRDGVKLYTVIVIPKN---ARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQDIRGKYGSQ 117 (652)
T ss_dssp EEECTTSCEEEEEEEEETT---CCSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEEECTTSTTCC
T ss_pred EEECCCCcEEEEEEEecCC---CCCccEEEEECCCCCCcccccccccccccccccchHHHHHhCCCEEEEEecCcCCCCC
Confidence 3445678899999999984 3678999999973321 01 1112111 2 8899999999999999998887
Q ss_pred hhhhhcCC--CCCC---cchHHHHHHHHHHHHHc-CCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh
Q 003363 637 EEALQSLP--GKVG---SQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710 (826)
Q Consensus 637 ~~~~~~~~--~~~~---~~~~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~ 710 (826)
..+....+ ..++ ..+.+|+.++++||.++ +..| .||+|+|+||||++++.+++++|+.++++|+.+|+.++..
T Consensus 118 g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~d-~rvgl~G~SyGG~~al~~a~~~~~~lka~v~~~~~~d~~~ 196 (652)
T 2b9v_A 118 GDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESN-GRVGMTGSSYEGFTVVMALLDPHPALKVAAPESPMVDGWM 196 (652)
T ss_dssp SCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEE-EEEEEEEEEHHHHHHHHHHTSCCTTEEEEEEEEECCCTTT
T ss_pred CcccccccccccccccccchhhHHHHHHHHHHhcCCCCC-CCEEEEecCHHHHHHHHHHhcCCCceEEEEeccccccccc
Confidence 76533211 1122 36899999999999998 7777 5999999999999999999888999999999999988532
Q ss_pred --hc---cCCCCC--CchhhhhccCcCC--------ccC------------------CCCCChh-------hHHHHhhcC
Q 003363 711 --MV---GTTDIP--DWCYVESYGSKGK--------DSF------------------TESPSVE-------DLTRFHSKS 750 (826)
Q Consensus 711 --~~---~~~~~~--~~~~~~~~~~~~~--------~~~------------------~~~~~~~-------~~~~~~~~s 750 (826)
.. +..... .|........... ..+ ...+.++ ..+.|...+
T Consensus 197 ~d~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~d~yw~~~S 276 (652)
T 2b9v_A 197 GDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAHPAYDAFWQGQA 276 (652)
T ss_dssp BSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHHHCCSSSHHHHTTC
T ss_pred ccceecCCchhhhhHHHHHHhhhcccCcccccccchHHHHHHhhcCchhhHHHhhccccchHHHHHHhCCCCChHHhcCC
Confidence 10 110110 1110000000000 000 0000000 012345678
Q ss_pred cccccCC--CCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCC--CCEEEEEeCCCCCCCCC-----C------CC--HHHH
Q 003363 751 PISHISK--VKTPTIFLLGAQDLRVPVSNGLQYARALREKG--VETKVIVFPNDVHGIER-----P------QS--DFES 813 (826)
Q Consensus 751 p~~~~~~--i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g--~~~~~~~~p~~~H~~~~-----~------~~--~~~~ 813 (826)
|..++++ |++|+|++||..|.+ +..++.+++++|++++ ++.++++.|+ +|+... . .. ....
T Consensus 277 p~~~~~~~~I~~PvLiv~G~~D~~-~~~~~~~~~~aL~~~g~~~~~~lvigp~-~H~~~~~~~~~~~~~~f~~~~~~~~~ 354 (652)
T 2b9v_A 277 LDKILAQRKPTVPMLWEQGLWDQE-DMWGAIHAWQALKDADVKAPNTLVMGPW-RHSGVNYNGSTLGPLEFEGDTAHQYR 354 (652)
T ss_dssp HHHHHHHHCCCSCEEEEEETTCSS-CSSHHHHHHHHHHHTTCSSCEEEEEESC-CTTGGGSCCSEETTEECSSCHHHHHH
T ss_pred hhhhhhcCCCCCCEEEEeecCCcc-ccccHHHHHHHHHhcCCCCCCEEEECCC-CCCCcccccccCCccccccccchhhh
Confidence 8889999 999999999999997 6789999999999998 8899999887 697521 1 11 1233
Q ss_pred HHHHHHHHHHHcC
Q 003363 814 FLNIGLWFKKYCK 826 (826)
Q Consensus 814 ~~~i~~w~~~~l~ 826 (826)
.+.+++||++|||
T Consensus 355 ~~~~~~wfd~~Lk 367 (652)
T 2b9v_A 355 RDVFRPFFDEYLK 367 (652)
T ss_dssp HHTHHHHHHHHHS
T ss_pred hhHHHHHHHHHhC
Confidence 6788999999986
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=199.53 Aligned_cols=185 Identities=16% Similarity=0.189 Sum_probs=151.6
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHH
Q 003363 578 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT 657 (826)
Q Consensus 578 ~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~ 657 (826)
+.+|.|.. ..+.|+||++||++.. ...|...+..|+++||.|+++|+||.+.... ...+|+.+
T Consensus 85 ~~~~~p~~---~~~~p~vv~~HG~~~~--~~~~~~~~~~la~~G~~vv~~d~~g~g~s~~------------~~~~d~~~ 147 (306)
T 3vis_A 85 GTIYYPRE---NNTYGAIAISPGYTGT--QSSIAWLGERIASHGFVVIAIDTNTTLDQPD------------SRARQLNA 147 (306)
T ss_dssp EEEEEESS---CSCEEEEEEECCTTCC--HHHHHHHHHHHHTTTEEEEEECCSSTTCCHH------------HHHHHHHH
T ss_pred eEEEeeCC---CCCCCEEEEeCCCcCC--HHHHHHHHHHHHhCCCEEEEecCCCCCCCcc------------hHHHHHHH
Confidence 46777863 3378999999997654 4467778889999999999999999544321 23578899
Q ss_pred HHHHHHHc------CCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCC
Q 003363 658 AIDHVIDM------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 731 (826)
Q Consensus 658 ~i~~l~~~------~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (826)
+++++.+. ..+|.++|+|+|||+||.+++.++.++|+ ++++|+.+|...
T Consensus 148 ~~~~l~~~~~~~~~~~~~~~~v~l~G~S~GG~~a~~~a~~~p~-v~~~v~~~~~~~------------------------ 202 (306)
T 3vis_A 148 ALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPD-LKAAIPLTPWHL------------------------ 202 (306)
T ss_dssp HHHHHHHTSCHHHHTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS------------------------
T ss_pred HHHHHHhhcchhhhccCCcccEEEEEEChhHHHHHHHHhhCCC-eeEEEEeccccC------------------------
Confidence 99999887 66888999999999999999999999987 889988877432
Q ss_pred ccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcH-HHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCH
Q 003363 732 DSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVS-NGLQYARALREKGVETKVIVFPNDVHGIERPQSD 810 (826)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~-~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~ 810 (826)
...+.++++|+|+++|++|..+|++ +.+.+++.++..+ +++++++++++|.+.....
T Consensus 203 --------------------~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~l~~~~-~~~~~~~~g~gH~~~~~~~- 260 (306)
T 3vis_A 203 --------------------NKSWRDITVPTLIIGAEYDTIASVTLHSKPFYNSIPSPT-DKAYLELDGASHFAPNITN- 260 (306)
T ss_dssp --------------------CCCCTTCCSCEEEEEETTCSSSCTTTTHHHHHHTCCTTS-CEEEEEETTCCTTGGGSCC-
T ss_pred --------------------ccccccCCCCEEEEecCCCcccCcchhHHHHHHHhccCC-CceEEEECCCCccchhhch-
Confidence 1234567899999999999999998 6999999998766 8999999999998865554
Q ss_pred HHHHHHHHHHHHHHcC
Q 003363 811 FESFLNIGLWFKKYCK 826 (826)
Q Consensus 811 ~~~~~~i~~w~~~~l~ 826 (826)
.++...+.+||+++++
T Consensus 261 ~~~~~~i~~fl~~~l~ 276 (306)
T 3vis_A 261 KTIGMYSVAWLKRFVD 276 (306)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHcc
Confidence 4788999999999874
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-20 Score=192.74 Aligned_cols=188 Identities=15% Similarity=0.151 Sum_probs=150.7
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHH
Q 003363 577 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL 656 (826)
Q Consensus 577 ~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~ 656 (826)
.+.++.|... +.++.|+||++||++.. ...|...+..|+++||.|+++|+||.+.... ....|+.
T Consensus 40 ~~~l~~p~~~-~~~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~~------------~~~~d~~ 104 (262)
T 1jfr_A 40 GGTIYYPTST-ADGTFGAVVISPGFTAY--QSSIAWLGPRLASQGFVVFTIDTNTTLDQPD------------SRGRQLL 104 (262)
T ss_dssp CEEEEEESCC-TTCCEEEEEEECCTTCC--GGGTTTHHHHHHTTTCEEEEECCSSTTCCHH------------HHHHHHH
T ss_pred ceeEEecCCC-CCCCCCEEEEeCCcCCC--chhHHHHHHHHHhCCCEEEEeCCCCCCCCCc------------hhHHHHH
Confidence 3567777642 35678999999997654 4467778889999999999999999543211 2357888
Q ss_pred HHHHHHHH----cCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCc
Q 003363 657 TAIDHVID----MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 732 (826)
Q Consensus 657 ~~i~~l~~----~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (826)
++++++.+ ...++.++|+|+|||+||.+++.++.++|+ ++++|+.+|...
T Consensus 105 ~~~~~l~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~p~~~------------------------- 158 (262)
T 1jfr_A 105 SALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRTS-LKAAIPLTGWNT------------------------- 158 (262)
T ss_dssp HHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS-------------------------
T ss_pred HHHHHHHhccccccccCcccEEEEEEChhHHHHHHHHhcCcc-ceEEEeecccCc-------------------------
Confidence 89999987 344677899999999999999999999988 899998877421
Q ss_pred cCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHH-HHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHH
Q 003363 733 SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSN-GLQYARALREKGVETKVIVFPNDVHGIERPQSDF 811 (826)
Q Consensus 733 ~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~-~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~ 811 (826)
...+.++++|+|+++|++|..++++. ++++++.++. +.+++++++++++|.+..... .
T Consensus 159 -------------------~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~H~~~~~~~-~ 217 (262)
T 1jfr_A 159 -------------------DKTWPELRTPTLVVGADGDTVAPVATHSKPFYESLPG-SLDKAYLELRGASHFTPNTSD-T 217 (262)
T ss_dssp -------------------CCCCTTCCSCEEEEEETTCSSSCTTTTHHHHHHHSCT-TSCEEEEEETTCCTTGGGSCC-H
T ss_pred -------------------cccccccCCCEEEEecCccccCCchhhHHHHHHHhhc-CCCceEEEeCCCCcCCcccch-H
Confidence 12345678999999999999999998 9999999853 567899999999998875544 4
Q ss_pred HHHHHHHHHHHHHcC
Q 003363 812 ESFLNIGLWFKKYCK 826 (826)
Q Consensus 812 ~~~~~i~~w~~~~l~ 826 (826)
++...+.+||+++++
T Consensus 218 ~~~~~i~~fl~~~l~ 232 (262)
T 1jfr_A 218 TIAKYSISWLKRFID 232 (262)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhc
Confidence 789999999999874
|
| >3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB: 3s8y_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.8e-21 Score=199.82 Aligned_cols=231 Identities=12% Similarity=0.087 Sum_probs=158.3
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH---HHHHHHHCCcEEEEECCCCCCC-----------C
Q 003363 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLG-----------F 635 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vl~~d~rG~~g-----------~ 635 (826)
...|.++...+|.|++++..+++|+||++||++... ..|.. ..+.+++.||.|+++|.++.+. .
T Consensus 25 ~~~g~~~~~~v~~P~~~~~~~~~p~vv~lHG~~~~~--~~~~~~~~~~~~~~~~g~~vv~pd~~~~g~~~~~~~~~~~G~ 102 (280)
T 3i6y_A 25 NTLNCAMRFAIYLPPQASTGAKVPVLYWLSGLTCSD--ENFMQKAGAQRLAAELGIAIVAPDTSPRGEGVADDEGYDLGQ 102 (280)
T ss_dssp TTTTEEEEEEEEECGGGGTTCCEEEEEEECCTTCCS--SHHHHHSCCHHHHHHHTCEEEEECSSCCSTTCCCCSSTTSST
T ss_pred cccCCeeEEEEEeCCCCCCCCCccEEEEecCCCCCh--hHHhhcccHHHHHhhCCeEEEEeCCcccccccCccccccccc
Confidence 346788999999999766678899999999987653 33433 3456678899999999875321 1
Q ss_pred chhhhhcCCC-CCC-cch-HHHH-HHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh
Q 003363 636 GEEALQSLPG-KVG-SQD-VNDV-LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711 (826)
Q Consensus 636 G~~~~~~~~~-~~~-~~~-~~D~-~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~ 711 (826)
|..+...... .+. ... ...+ .+.++++.+...+ ++||+|+|||+||++++.++.++|++|+++++.+|+++....
T Consensus 103 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s~~~~~~~~ 181 (280)
T 3i6y_A 103 GAGFYVNATQAPWNRHYQMYDYVVNELPELIESMFPV-SDKRAIAGHSMGGHGALTIALRNPERYQSVSAFSPINNPVNC 181 (280)
T ss_dssp TCCTTCBCCSTTGGGTCBHHHHHHTHHHHHHHHHSSE-EEEEEEEEETHHHHHHHHHHHHCTTTCSCEEEESCCCCGGGS
T ss_pred CccccccccCCCccchhhHHHHHHHHHHHHHHHhCCC-CCCeEEEEECHHHHHHHHHHHhCCccccEEEEeCCccccccC
Confidence 1111100000 000 001 2222 2444555455434 589999999999999999999999999999999998765321
Q ss_pred ccCCCCCCch---hhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCC--CcEEEEEeCCCCCCCcHH-HHHHHHHH
Q 003363 712 VGTTDIPDWC---YVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK--TPTIFLLGAQDLRVPVSN-GLQYARAL 785 (826)
Q Consensus 712 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~--~PvLii~G~~D~~vp~~~-~~~~~~~l 785 (826)
. |. +...++. ....+...+|...+.+++ +|+|++||+.|.+++.+. +++++++|
T Consensus 182 ~-------~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~l 241 (280)
T 3i6y_A 182 P-------WGQKAFTAYLGK-------------DTDTWREYDASLLMRAAKQYVPALVDQGEADNFLAEQLKPEVLEAAA 241 (280)
T ss_dssp H-------HHHHHHHHHHCS-------------CGGGTGGGCHHHHHHHCSSCCCEEEEEETTCTTHHHHTCHHHHHHHH
T ss_pred c-------hHHHHHHHhcCC-------------chHHHHhcCHHHHHHhcCCCccEEEEEeCCCccccchhhHHHHHHHH
Confidence 0 10 0011111 011233455555555554 899999999999998755 88999999
Q ss_pred HhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 786 REKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 786 ~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
++.|++++++++|+++|.+. .......++++|+.++|+
T Consensus 242 ~~~g~~~~~~~~~g~~H~~~---~~~~~~~~~l~~~~~~l~ 279 (280)
T 3i6y_A 242 SSNNYPLELRSHEGYDHSYY---FIASFIEDHLRFHSNYLN 279 (280)
T ss_dssp HHTTCCEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCceEEEeCCCCccHH---HHHHhHHHHHHHHHhhcc
Confidence 99999999999999999863 123567889999999875
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-19 Score=188.12 Aligned_cols=233 Identities=12% Similarity=0.181 Sum_probs=157.5
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-Cccch-HHHHHHHHCCcEEEEECCCCCCCCchhhhhcCC
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 644 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~-~~~~~-~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~ 644 (826)
.+...+|..+++.++.|. ..++.|+||++||+++... ...+. .....|++. |.|+++|+||++...
T Consensus 7 ~~~~~dg~~l~~~~~~p~---~~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~l~~~-~~v~~~d~~~~~~~~-------- 74 (275)
T 3h04_A 7 KVITKDAFALPYTIIKAK---NQPTKGVIVYIHGGGLMFGKANDLSPQYIDILTEH-YDLIQLSYRLLPEVS-------- 74 (275)
T ss_dssp EEECTTSCEEEEEEECCS---SSSCSEEEEEECCSTTTSCCTTCSCHHHHHHHTTT-EEEEEECCCCTTTSC--------
T ss_pred EEecCCcEEEEEEEEccC---CCCCCCEEEEEECCcccCCchhhhHHHHHHHHHhC-ceEEeeccccCCccc--------
Confidence 344567888999999987 4557899999999873222 23333 566677776 999999999864321
Q ss_pred CCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCch---
Q 003363 645 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC--- 721 (826)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~--- 721 (826)
.....+|+.++++++.+. ++.++++|+|||+||.+++.++.+ ++++++|+.+|..+......... ..+.
T Consensus 75 ---~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a~~--~~v~~~v~~~~~~~~~~~~~~~~-~~~~~~~ 146 (275)
T 3h04_A 75 ---LDCIIEDVYASFDAIQSQ--YSNCPIFTFGRSSGAYLSLLIARD--RDIDGVIDFYGYSRINTEPFKTT-NSYYAKI 146 (275)
T ss_dssp ---HHHHHHHHHHHHHHHHHT--TTTSCEEEEEETHHHHHHHHHHHH--SCCSEEEEESCCSCSCSHHHHSC-CHHHHHH
T ss_pred ---cchhHHHHHHHHHHHHhh--CCCCCEEEEEecHHHHHHHHHhcc--CCccEEEeccccccccccccccc-cchhhcc
Confidence 123578999999999987 667899999999999999999998 78999999999876521110000 0000
Q ss_pred -------hhhhccCcCCccCCCCCChhhHHHH------------hh--------cC-cccccCCCCCcEEEEEeCCCCCC
Q 003363 722 -------YVESYGSKGKDSFTESPSVEDLTRF------------HS--------KS-PISHISKVKTPTIFLLGAQDLRV 773 (826)
Q Consensus 722 -------~~~~~~~~~~~~~~~~~~~~~~~~~------------~~--------~s-p~~~~~~i~~PvLii~G~~D~~v 773 (826)
....+.. ...............+ .. .. ....+.++. |+|+++|++|..+
T Consensus 147 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-P~lii~G~~D~~~ 223 (275)
T 3h04_A 147 AQSINETMIAQLTS--PTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTDSKYNIAPDELKTLP-PVFIAHCNGDYDV 223 (275)
T ss_dssp HTTSCHHHHHTTSC--SSCCSSCSSGGGHHHHHHHHHHTCHHHHHCCSCTTSGGGSCCHHHHTTCC-CEEEEEETTCSSS
T ss_pred cccchHHHHhcccC--CCCcCCCccccchhhhhhhhhcCchHHhhccccccccccccccchhccCC-CEEEEecCCCCCC
Confidence 0000000 0000000000000000 00 00 111235666 9999999999999
Q ss_pred CcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCH--HHHHHHHHHHHHHHcC
Q 003363 774 PVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD--FESFLNIGLWFKKYCK 826 (826)
Q Consensus 774 p~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~--~~~~~~i~~w~~~~l~ 826 (826)
|++++.++++.+++ .+++++++++|.+...... .+++..+.+||++++.
T Consensus 224 ~~~~~~~~~~~~~~----~~~~~~~~~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 274 (275)
T 3h04_A 224 PVEESEHIMNHVPH----STFERVNKNEHDFDRRPNDEAITIYRKVVDFLNAITM 274 (275)
T ss_dssp CTHHHHHHHTTCSS----EEEEEECSSCSCTTSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHhcCC----ceEEEeCCCCCCcccCCchhHHHHHHHHHHHHHHHhc
Confidence 99999888776654 7899999999998776664 6899999999999873
|
| >2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-21 Score=203.21 Aligned_cols=227 Identities=18% Similarity=0.209 Sum_probs=161.0
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CCccchHHHHHHHHC-CcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSSV-GYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~-~~~~~~~~~~~la~~-G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
.+| .+.+++|.|++. .++.|+||++|||++.. ....|...+..|+++ ||.|+++||||.+++. .
T Consensus 56 ~~g-~l~~~~~~P~~~--~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~d~rg~~~~~-----------~ 121 (310)
T 2hm7_A 56 PGR-TLKVRMYRPEGV--EPPYPALVYYHGGSWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPEHK-----------F 121 (310)
T ss_dssp TTE-EEEEEEEECTTC--CSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTSC-----------T
T ss_pred CCC-eEEEEEEecCCC--CCCCCEEEEECCCccccCChhHhHHHHHHHHHhcCCEEEEeCCCCCCCCC-----------C
Confidence 344 899999999742 56789999999977433 344677788888875 9999999999966532 1
Q ss_pred cchHHHHHHHHHHHHHcC---CCCCCcEEEEEecchHHHHHHHHHhCCC----ceeEEEecCCccchhhhccCCCCCCch
Q 003363 649 SQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDWC 721 (826)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~p~~~~~~~~~~~~~~~~~ 721 (826)
....+|+.++++|+.+.. .+|+++|+|+|||+||.+++.++.++|+ .++++|+.+|..+..... ..+.+
T Consensus 122 ~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~v~~~vl~~p~~~~~~~~---~~~~~- 197 (310)
T 2hm7_A 122 PAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTGYDPAH---PPASI- 197 (310)
T ss_dssp THHHHHHHHHHHHHHHTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCCCEEEESCCCCCCTTS---CCHHH-
T ss_pred CccHHHHHHHHHHHHhhHHHhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcCCCccc---CCcch-
Confidence 235789999999998864 3678899999999999999999988776 699999999987653110 00000
Q ss_pred hhhhccCcCCccCCCCCChhhH----HHH---------hhcCccc--ccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHH
Q 003363 722 YVESYGSKGKDSFTESPSVEDL----TRF---------HSKSPIS--HISKVKTPTIFLLGAQDLRVPVSNGLQYARALR 786 (826)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~----~~~---------~~~sp~~--~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~ 786 (826)
..... ... ...... ..+ ...+|.. .+..+ +|+||++|++|..+ .++..++++|+
T Consensus 198 --~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~-~P~lii~G~~D~~~--~~~~~~~~~l~ 266 (310)
T 2hm7_A 198 --EENAE---GYL---LTGGMMLWFRDQYLNSLEELTHPWFSPVLYPDLSGL-PPAYIATAQYDPLR--DVGKLYAEALN 266 (310)
T ss_dssp --HHTSS---SSS---SCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCCTTC-CCEEEEEEEECTTH--HHHHHHHHHHH
T ss_pred --hhcCC---CCC---CCHHHHHHHHHHhCCCCCccCCccCCCCcCccccCC-CCEEEEEecCCCch--HHHHHHHHHHH
Confidence 00000 000 000000 000 0123332 12333 49999999999987 78889999999
Q ss_pred hCCCCEEEEEeCCCCCCCCC----CCCHHHHHHHHHHHHHHHcC
Q 003363 787 EKGVETKVIVFPNDVHGIER----PQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 787 ~~g~~~~~~~~p~~~H~~~~----~~~~~~~~~~i~~w~~~~l~ 826 (826)
+.|++++++++++++|++.. .+...+++..+.+||+++|+
T Consensus 267 ~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 310 (310)
T 2hm7_A 267 KAGVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDALA 310 (310)
T ss_dssp HTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCEEEEEeCCCccchhhhcccChHHHHHHHHHHHHHHHHhC
Confidence 99999999999999998753 12335788999999999875
|
| >2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.6e-20 Score=183.64 Aligned_cols=199 Identities=11% Similarity=0.093 Sum_probs=151.5
Q ss_pred ccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCC---CCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCC
Q 003363 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHS---VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 645 (826)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~---~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~ 645 (826)
...+| .+.++++.|.+. ..++.|+||++||++.. .....+...+..|+++||.|+++|+||.+..... .
T Consensus 16 ~~~~g-~~~~~~~~p~~~-~~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~------~ 87 (220)
T 2fuk_A 16 DGPVG-PLDVAVDLPEPD-VAVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAGS------F 87 (220)
T ss_dssp EETTE-EEEEEEECCCTT-SCCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTSTTCCSC------C
T ss_pred eCCCC-eEEEEEEeCCCC-CccccCEEEEECCCCCcCCcccchHHHHHHHHHHHCCCeEEEEecCCCCCCCCC------c
Confidence 34455 799999998731 01568999999996422 1223456678889999999999999995543221 1
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhh
Q 003363 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 725 (826)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~ 725 (826)
.......+|+.++++++.++. +.++|+++|||+||.+++.++.++ .++++|+.+|......
T Consensus 88 ~~~~~~~~d~~~~~~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~--~v~~~v~~~~~~~~~~--------------- 148 (220)
T 2fuk_A 88 DHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRWD--------------- 148 (220)
T ss_dssp CTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTBC---------------
T ss_pred ccCchhHHHHHHHHHHHHhcC--CCCcEEEEEECHHHHHHHHHHhhc--cccEEEEecccccchh---------------
Confidence 223446899999999999883 667999999999999999999887 8999999988764211
Q ss_pred ccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCC
Q 003363 726 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 805 (826)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 805 (826)
...+. ...|+|+++|++|..+|++.+.++++.++ .+++++++++++|.+.
T Consensus 149 --------------------------~~~~~-~~~p~l~i~g~~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~H~~~ 198 (220)
T 2fuk_A 149 --------------------------FSDVQ-PPAQWLVIQGDADEIVDPQAVYDWLETLE---QQPTLVRMPDTSHFFH 198 (220)
T ss_dssp --------------------------CTTCC-CCSSEEEEEETTCSSSCHHHHHHHHTTCS---SCCEEEEETTCCTTCT
T ss_pred --------------------------hhhcc-cCCcEEEEECCCCcccCHHHHHHHHHHhC---cCCcEEEeCCCCceeh
Confidence 00011 15789999999999999999988888774 3589999999999987
Q ss_pred CCCCHHHHHHHHHHHHHHHcC
Q 003363 806 RPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 806 ~~~~~~~~~~~i~~w~~~~l~ 826 (826)
. ...++.+.+.+||+++|+
T Consensus 199 ~--~~~~~~~~i~~~l~~~l~ 217 (220)
T 2fuk_A 199 R--KLIDLRGALQHGVRRWLP 217 (220)
T ss_dssp T--CHHHHHHHHHHHHGGGCS
T ss_pred h--hHHHHHHHHHHHHHHHhh
Confidence 5 245788999999999874
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.8e-21 Score=199.70 Aligned_cols=210 Identities=10% Similarity=0.103 Sum_probs=149.2
Q ss_pred CCCCCcEEEEEcCCCCCC---CCccchHHHHHH----HHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHH
Q 003363 588 DCSCDPLIVVLHGGPHSV---SLSSYSKSLAFL----SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAID 660 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~---~~~~~~~~~~~l----a~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~ 660 (826)
+.++.|+||++|||++.. ....|...+..| ++.||.|+++|||++++. .....++|+.++++
T Consensus 37 ~~~~~p~vv~lHGgg~~~g~~~~~~~~~~~~~L~~~a~~~g~~vi~~d~r~~~~~-----------~~~~~~~d~~~~~~ 105 (273)
T 1vkh_A 37 SQNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEI-----------TNPRNLYDAVSNIT 105 (273)
T ss_dssp CTTCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTS-----------CTTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCcccCCcCChHHHHHHHHHHhhhhccCCcEEEEeecccCCCC-----------CCCcHHHHHHHHHH
Confidence 356789999999987543 244677778888 689999999999985432 11235789999999
Q ss_pred HHHHcCCCCCCcEEEEEecchHHHHHHHHHhC-----------------CCceeEEEecCCccchhhhccCCCCCCch--
Q 003363 661 HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-----------------PDKFVAAAARNPLCNLALMVGTTDIPDWC-- 721 (826)
Q Consensus 661 ~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~-----------------p~~~~a~v~~~p~~~~~~~~~~~~~~~~~-- 721 (826)
+++++ ++.++|+|+|||+||.+++.++.++ |+.++++|+.+|+.++........ .+.
T Consensus 106 ~l~~~--~~~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~--~~~~~ 181 (273)
T 1vkh_A 106 RLVKE--KGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYP--EYDCF 181 (273)
T ss_dssp HHHHH--HTCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCG--GGHHH
T ss_pred HHHHh--CCcCcEEEEEeCHHHHHHHHHHHHhccCCccccccccccccCCcccceeeeecccccHHHhhhhcc--cHHHH
Confidence 99987 5778999999999999999999885 788999999999877654321110 110
Q ss_pred hhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCC
Q 003363 722 YVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDV 801 (826)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~ 801 (826)
....++. ....+. ........+. ......+++|+|++||++|..+|+++++.+++.++..+.+++++++++++
T Consensus 182 ~~~~~~~-~~~~~~--~~~~~~~~~~----~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~~~g 254 (273)
T 1vkh_A 182 TRLAFPD-GIQMYE--EEPSRVMPYV----KKALSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGL 254 (273)
T ss_dssp HHHHCTT-CGGGCC--CCHHHHHHHH----HHHHHHHTCEEEEEEETTCSSCCTHHHHHHHHHHHHTTCCEEEEEECCCS
T ss_pred HHHHhcc-cccchh--hcccccChhh----hhcccccCCCEEEEecCCcCCCChHHHHHHHHHHHhcCCceEEEEeCCCc
Confidence 0011100 000000 0001111100 00122367999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHH
Q 003363 802 HGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 802 H~~~~~~~~~~~~~~i~~w~ 821 (826)
|.+.... .++.+.+.+||
T Consensus 255 H~~~~~~--~~~~~~i~~fl 272 (273)
T 1vkh_A 255 HNDVYKN--GKVAKYIFDNI 272 (273)
T ss_dssp GGGGGGC--HHHHHHHHHTC
T ss_pred ccccccC--hHHHHHHHHHc
Confidence 9876444 57778887775
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-20 Score=204.18 Aligned_cols=289 Identities=15% Similarity=0.075 Sum_probs=185.0
Q ss_pred CCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceee
Q 003363 137 ENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISW 215 (826)
Q Consensus 137 ~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~w 215 (826)
.+...++||..+..........|+|||||++|||.+..+ +..+++.++ .+++.++++...... ...+.|
T Consensus 19 ~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-g~~~l~~~d~~~g~~~~lt~~~~~~---------~~~~~~ 88 (388)
T 3pe7_A 19 TGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFD-GPWNYYLLDLNTQVATQLTEGRGDN---------TFGGFL 88 (388)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTT-SSCEEEEEETTTCEEEECCCSSCBC---------SSSCEE
T ss_pred CCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCC-CCceEEEEeCCCCceEEeeeCCCCC---------ccceEE
Confidence 445567776554110001122389999999999998754 566788887 566666665433221 136789
Q ss_pred cCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCC
Q 003363 216 NSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL 295 (826)
Q Consensus 216 SPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~ 295 (826)
||||++|+|.+.+ ..|+++|+++++.+.+...+...
T Consensus 89 spdg~~l~~~~~~--------------------------------------------~~l~~~d~~~g~~~~~~~~~~~~ 124 (388)
T 3pe7_A 89 SPDDDALFYVKDG--------------------------------------------RNLMRVDLATLEENVVYQVPAEW 124 (388)
T ss_dssp CTTSSEEEEEETT--------------------------------------------TEEEEEETTTCCEEEEEECCTTE
T ss_pred cCCCCEEEEEeCC--------------------------------------------CeEEEEECCCCcceeeeechhhc
Confidence 9999999998532 47999999999988763222221
Q ss_pred -ccceEEEeeCCCCCccEEEEEeecCcceeeee-------eeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceec
Q 003363 296 -SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGI-------KYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL 367 (826)
Q Consensus 296 -~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~-------~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L 367 (826)
......++|||+. |+............. .+.......||++|+ .+++.+.+
T Consensus 125 ~~~~~~~~~~dg~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-----------------~~g~~~~l 183 (388)
T 3pe7_A 125 VGYGTWVANSDCTK----LVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDL-----------------KTGESTVI 183 (388)
T ss_dssp EEEEEEEECTTSSE----EEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEET-----------------TTCCEEEE
T ss_pred ccccceeECCCCCe----eccccccCcccccccccchhhhhhccCCcceEEEEEC-----------------CCCceEEe
Confidence 1123345999997 775432111000000 001123358999998 78888888
Q ss_pred CCCCccccCceecC-CCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCC
Q 003363 368 TESISSAFFPRFSP-DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSI 446 (826)
Q Consensus 368 t~~~~~~~~p~~Sp-DG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~ 446 (826)
+........+.||| ||++|+|.+.... .....+||++|..++..+.++..... ...
T Consensus 184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~-----~~~~~~l~~~d~~~~~~~~l~~~~~~------------------~~~ 240 (388)
T 3pe7_A 184 LQENQWLGHPIYRPYDDSTVAFCHEGPH-----DLVDARMWLINEDGTNMRKVKTHAEG------------------ESC 240 (388)
T ss_dssp EEESSCEEEEEEETTEEEEEEEEECSCT-----TTSSCSEEEEETTSCCCEESCCCCTT------------------EEE
T ss_pred ecCCccccccEECCCCCCEEEEEEecCC-----CCCcceEEEEeCCCCceEEeeeCCCC------------------ccc
Confidence 87777778999999 9999999986421 12246899999887665544432210 011
Q ss_pred CCCccccCCCEEEEEEEeCCeE--EEEEEECCCCcEEEecCCCCC------eeeEEEeecCCEEEEEEeC-----CCCCC
Q 003363 447 LSNPWLSDGCTMLLSSIWGSSQ--VIISVNVSSGELLRITPAESN------FSWSLLTLDGDNIIAVSSS-----PVDVP 513 (826)
Q Consensus 447 ~~~~ws~Dg~~l~~~~~~~~~~--~l~~vdl~tg~~~~lt~~~~~------~~~~~~s~dg~~l~~~~s~-----~~~p~ 513 (826)
..+.|||||+.|++.+...+.. .||++|+++|+.++++..... .....|++||+.+++.... .....
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 320 (388)
T 3pe7_A 241 THEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDP 320 (388)
T ss_dssp EEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCC
T ss_pred ccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCC
Confidence 2467999999998887766544 599999999998888654330 1112689999998887643 25567
Q ss_pred eEEEEeeccc
Q 003363 514 QVKYGYFVDK 523 (826)
Q Consensus 514 ~l~~~~~~~~ 523 (826)
.|++.++.++
T Consensus 321 ~i~~~d~~~~ 330 (388)
T 3pe7_A 321 FLYVFNMKNG 330 (388)
T ss_dssp EEEEEETTTT
T ss_pred EEEEEeccCC
Confidence 8999987654
|
| >1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5e-20 Score=197.08 Aligned_cols=237 Identities=20% Similarity=0.205 Sum_probs=160.9
Q ss_pred eccCCCe-eEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CCccchHHHHHHHH-CCcEEEEECCCCCCCCchhhhhcCC
Q 003363 568 LTKGAQK-PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLP 644 (826)
Q Consensus 568 ~~~~~g~-~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~-~~~~~~~~~~~la~-~G~~Vl~~d~rG~~g~G~~~~~~~~ 644 (826)
+...+|. ++.+++|.|++ ..++.|+||++|||++.. ....+...+..|++ .||.|+++||||.+++.
T Consensus 56 i~~~~g~~~l~~~~~~P~~--~~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~G~~Vv~~d~rg~~~~~-------- 125 (323)
T 1lzl_A 56 APGLDGDPEVKIRFVTPDN--TAGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAPETT-------- 125 (323)
T ss_dssp ECCSTTCCCEEEEEEEESS--CCSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTTTSC--------
T ss_pred ecCCCCCceeEEEEEecCC--CCCCCcEEEEECCCccccCChhhhHHHHHHHHHhcCcEEEEecCCCCCCCC--------
Confidence 3344555 79999999974 346789999999987543 23456677778876 59999999999965431
Q ss_pred CCCCcchHHHHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHhCCC----ceeEEEecCCccchhhhc----c
Q 003363 645 GKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMV----G 713 (826)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~p~~~~~~~~----~ 713 (826)
.....+|+.++++|+.+. ..+|+++|+|+|||+||.+++.++.++++ .++++++.+|+.+..... .
T Consensus 126 ---~~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~ 202 (323)
T 1lzl_A 126 ---FPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPELDDRLETVSMTN 202 (323)
T ss_dssp ---TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCCCCTTCCSHHHHH
T ss_pred ---CCchHHHHHHHHHHHHhhHHHcCCChhheEEEecCchHHHHHHHHHHHhhcCCCCeeEEEEECCccCCCcCchhHHH
Confidence 123578999999999874 23678899999999999999999987765 499999999987653210 0
Q ss_pred CCCCCCchh------hhhccCcCCccCCCCCChhhHHHHhhcCcccccCCC--CCcEEEEEeCCCCCCCcHHHHHHHHHH
Q 003363 714 TTDIPDWCY------VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARAL 785 (826)
Q Consensus 714 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i--~~PvLii~G~~D~~vp~~~~~~~~~~l 785 (826)
......|.. ...+....... ..........+|... ..+ .+|+||++|+.|..+ .++..++++|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~sp~~~-~~~~~~~P~li~~G~~D~~~--~~~~~~~~~l 273 (323)
T 1lzl_A 203 FVDTPLWHRPNAILSWKYYLGESYSG------PEDPDVSIYAAPSRA-TDLTGLPPTYLSTMELDPLR--DEGIEYALRL 273 (323)
T ss_dssp CSSCSSCCHHHHHHHHHHHHCTTCCC------TTCSCCCTTTCGGGC-SCCTTCCCEEEEEETTCTTH--HHHHHHHHHH
T ss_pred hccCCCCCHHHHHHHHHHhCCCCccc------ccccCCCcccCcccC-cccCCCChhheEECCcCCch--HHHHHHHHHH
Confidence 000000000 00000000000 000000011223222 122 279999999999987 6889999999
Q ss_pred HhCCCCEEEEEeCCCCCCCCCCC---CHHHHHHHHHHHHHHHcC
Q 003363 786 REKGVETKVIVFPNDVHGIERPQ---SDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 786 ~~~g~~~~~~~~p~~~H~~~~~~---~~~~~~~~i~~w~~~~l~ 826 (826)
++.|+++++++|||++|++.... ...+++..+.+||+++++
T Consensus 274 ~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~i~~fl~~~l~ 317 (323)
T 1lzl_A 274 LQAGVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLR 317 (323)
T ss_dssp HHTTCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTC
T ss_pred HHcCCCEEEEEeCcCccCcccCccCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999865322 245788999999999874
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-21 Score=203.41 Aligned_cols=199 Identities=18% Similarity=0.193 Sum_probs=149.2
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHH
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 654 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~-~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D 654 (826)
+...+|.|++ ..++.|+||++|||++... ...+...++.|+++||.|+++|||++++.. ....+.|
T Consensus 68 ~~~~~~~p~~--~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~r~~~~~~-----------~~~~~~d 134 (303)
T 4e15_A 68 QLVDVFYSEK--TTNQAPLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDYNLCPQVT-----------LEQLMTQ 134 (303)
T ss_dssp CEEEEEECTT--CCTTCCEEEEECCSTTTSCCGGGSCTTHHHHHHTTCEEEEECCCCTTTSC-----------HHHHHHH
T ss_pred cEEEEEecCC--CCCCCCEEEEECCCcCcCCChhHHHHHHHHHHhCCCEEEEecCCCCCCCC-----------hhHHHHH
Confidence 4556777863 4567899999999875432 335666788899999999999999965432 1234789
Q ss_pred HHHHHHHHHHc-CCCCCCcEEEEEecchHHHHHHHHHhCC-------CceeEEEecCCccchhhhccCCCCCCchhhhhc
Q 003363 655 VLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAP-------DKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 726 (826)
Q Consensus 655 ~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~a~~~p-------~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 726 (826)
+.++++++.+. ..++.++|+|+|||+||++++.++.+.+ ++++++|+.+|+.++..+..... .+ ....+
T Consensus 135 ~~~~~~~l~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~p~~~~v~~~v~~~~~~~~~~~~~~~~--~~-~~~~~ 211 (303)
T 4e15_A 135 FTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWALIFLCGVYDLRELSNLES--VN-PKNIL 211 (303)
T ss_dssp HHHHHHHHHHHHHHTTCSCEEEEEETHHHHHHGGGGGCTTTSCHHHHHTEEEEEEESCCCCCHHHHTCTT--TS-GGGTT
T ss_pred HHHHHHHHHHHhhhcCCCeEEEEeecHHHHHHHHHHhccccccCcccccccEEEEEeeeeccHhhhcccc--cc-hhhhh
Confidence 99999999873 2256889999999999999999988654 37999999999988765432110 00 00001
Q ss_pred cCcCCccCCCCCChhhHHHHhhcCcc-cccCCC----CCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCC
Q 003363 727 GSKGKDSFTESPSVEDLTRFHSKSPI-SHISKV----KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDV 801 (826)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~~~i----~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~ 801 (826)
+ .. .+.+...+|+ ..+..+ ++|+|++||++|..+|+.++.+++++|++.|.+++++++|+++
T Consensus 212 ~--------~~-----~~~~~~~sp~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~g~~ 278 (303)
T 4e15_A 212 G--------LN-----ERNIESVSPMLWEYTDVTVWNSTKIYVVAAEHDSTTFIEQSRHYADVLRKKGYKASFTLFKGYD 278 (303)
T ss_dssp C--------CC-----TTTTTTTCGGGCCCCCGGGGTTSEEEEEEEEESCHHHHHHHHHHHHHHHHHTCCEEEEEEEEEE
T ss_pred c--------CC-----HHHHHHcCchhhcccccccCCCCCEEEEEeCCCCCCchHHHHHHHHHHHHCCCceEEEEeCCCC
Confidence 1 11 1223455666 556655 8999999999999999999999999999999999999999999
Q ss_pred CC
Q 003363 802 HG 803 (826)
Q Consensus 802 H~ 803 (826)
|.
T Consensus 279 H~ 280 (303)
T 4e15_A 279 HF 280 (303)
T ss_dssp TT
T ss_pred ch
Confidence 95
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.6e-20 Score=189.33 Aligned_cols=240 Identities=16% Similarity=0.181 Sum_probs=155.7
Q ss_pred ccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
...+|..+.+..+.+. +.+.|+||++||++.......+......|+++||.|+++|+||.+..... ..
T Consensus 18 ~~~~g~~l~~~~~~~~----~~~~~~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~--------~~ 85 (270)
T 3llc_A 18 QGSDARSIAALVRAPA----QDERPTCIWLGGYRSDMTGTKALEMDDLAASLGVGAIRFDYSGHGASGGA--------FR 85 (270)
T ss_dssp SGGGCEEEEEEEECCS----STTSCEEEEECCTTCCTTSHHHHHHHHHHHHHTCEEEEECCTTSTTCCSC--------GG
T ss_pred eccCcceEEEEeccCC----CCCCCeEEEECCCccccccchHHHHHHHHHhCCCcEEEeccccCCCCCCc--------cc
Confidence 3446778877666553 23479999999977653332344467778889999999999996544322 11
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHh---CC---CceeEEEecCCccchhhhccCCCCCCch-
Q 003363 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ---AP---DKFVAAAARNPLCNLALMVGTTDIPDWC- 721 (826)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~---~p---~~~~a~v~~~p~~~~~~~~~~~~~~~~~- 721 (826)
...++++.+.+..+++. +..++++|+|||+||.+++.++.+ +| ++++++|+.+|..++.............
T Consensus 86 ~~~~~~~~~d~~~~~~~--l~~~~~~l~G~S~Gg~~a~~~a~~~~~~p~~~~~v~~~il~~~~~~~~~~~~~~~~~~~~~ 163 (270)
T 3llc_A 86 DGTISRWLEEALAVLDH--FKPEKAILVGSSMGGWIALRLIQELKARHDNPTQVSGMVLIAPAPDFTSDLIEPLLGDRER 163 (270)
T ss_dssp GCCHHHHHHHHHHHHHH--HCCSEEEEEEETHHHHHHHHHHHHHHTCSCCSCEEEEEEEESCCTTHHHHTTGGGCCHHHH
T ss_pred cccHHHHHHHHHHHHHH--hccCCeEEEEeChHHHHHHHHHHHHHhccccccccceeEEecCcccchhhhhhhhhhhhhh
Confidence 22344444444333333 235789999999999999999999 99 9999999999987654321111110000
Q ss_pred --hhhhccCcCCccCCCCC---ChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEE
Q 003363 722 --YVESYGSKGKDSFTESP---SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 796 (826)
Q Consensus 722 --~~~~~~~~~~~~~~~~~---~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 796 (826)
............+...+ ................+.++++|+|+++|++|..+|.+.+..+++.+.. .++++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~v~~~~~~~~~~~~~~--~~~~~~~ 241 (270)
T 3llc_A 164 AELAENGYFEEVSEYSPEPNIFTRALMEDGRANRVMAGMIDTGCPVHILQGMADPDVPYQHALKLVEHLPA--DDVVLTL 241 (270)
T ss_dssp HHHHHHSEEEECCTTCSSCEEEEHHHHHHHHHTCCTTSCCCCCSCEEEEEETTCSSSCHHHHHHHHHTSCS--SSEEEEE
T ss_pred hhhhccCcccChhhcccchhHHHHHHHhhhhhhhhhhhhhcCCCCEEEEecCCCCCCCHHHHHHHHHhcCC--CCeeEEE
Confidence 00000000001111111 1122333444455667788999999999999999999999888887754 3589999
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 797 FPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 797 ~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
+++++|.+...+...++...+.+||++.
T Consensus 242 ~~~~gH~~~~~~~~~~~~~~i~~fl~~~ 269 (270)
T 3llc_A 242 VRDGDHRLSRPQDIDRMRNAIRAMIEPR 269 (270)
T ss_dssp ETTCCSSCCSHHHHHHHHHHHHHHHC--
T ss_pred eCCCcccccccccHHHHHHHHHHHhcCC
Confidence 9999998766666667778888888653
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7.8e-20 Score=195.38 Aligned_cols=222 Identities=18% Similarity=0.228 Sum_probs=154.5
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-ccchHHHHHHHH-CCcEEEEECCCCCCCCchhhhhcCCCCCCc
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~~~~~~~la~-~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~ 649 (826)
+|.++ |.|++ .....|+||++|||++.... ..+...+..|++ .||.|+++|||++++.. ..
T Consensus 66 ~g~~~----~~p~~--~~~~~~~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~dyr~~~~~~-----------~~ 128 (322)
T 3k6k_A 66 GGVPC----IRQAT--DGAGAAHILYFHGGGYISGSPSTHLVLTTQLAKQSSATLWSLDYRLAPENP-----------FP 128 (322)
T ss_dssp TTEEE----EEEEC--TTCCSCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTCEEEEECCCCTTTSC-----------TT
T ss_pred CCEeE----EecCC--CCCCCeEEEEEcCCcccCCChHHHHHHHHHHHHhcCCEEEEeeCCCCCCCC-----------Cc
Confidence 45554 45653 23334459999998754333 356666777775 49999999999965431 23
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCc----eeEEEecCCccchhhhccCCCCCCchhhhh
Q 003363 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPLCNLALMVGTTDIPDWCYVES 725 (826)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~----~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~ 725 (826)
..++|+.++++|+.++ .+|+++|+|+|+|+||.+++.++.++++. ++++|+.+|+.++.... ..+...
T Consensus 129 ~~~~d~~~a~~~l~~~-~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~-------~~~~~~ 200 (322)
T 3k6k_A 129 AAVDDCVAAYRALLKT-AGSADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGLVMLSPFVDLTLSR-------WSNSNL 200 (322)
T ss_dssp HHHHHHHHHHHHHHHH-HSSGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCS-------HHHHHT
T ss_pred hHHHHHHHHHHHHHHc-CCCCccEEEEecCccHHHHHHHHHHHHhcCCCCceEEEEecCCcCcccCc-------cchhhc
Confidence 4589999999999998 47899999999999999999999887765 99999999988753210 000000
Q ss_pred ccCcCCccCCCCCChhhH----HHH--------hhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEE
Q 003363 726 YGSKGKDSFTESPSVEDL----TRF--------HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 793 (826)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~----~~~--------~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 793 (826)
... ..+ ...... ..+ ...+|+....+..+|+||+||++|..+ .++..++++|+..|++++
T Consensus 201 ~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~G~~D~~~--~~~~~~~~~l~~~g~~~~ 272 (322)
T 3k6k_A 201 ADR---DFL---AEPDTLGEMSELYVGGEDRKNPLISPVYADLSGLPEMLIHVGSEEALL--SDSTTLAERAGAAGVSVE 272 (322)
T ss_dssp GGG---CSS---SCHHHHHHHHHHHHTTSCTTCTTTCGGGSCCTTCCCEEEEEESSCTTH--HHHHHHHHHHHHTTCCEE
T ss_pred cCC---CCc---CCHHHHHHHHHHhcCCCCCCCCcCCcccccccCCCcEEEEECCcCccH--HHHHHHHHHHHHCCCCEE
Confidence 000 000 000000 001 123444333334479999999999874 789999999999999999
Q ss_pred EEEeCCCCCCCCCC----CCHHHHHHHHHHHHHHHcC
Q 003363 794 VIVFPNDVHGIERP----QSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 794 ~~~~p~~~H~~~~~----~~~~~~~~~i~~w~~~~l~ 826 (826)
+++||+++|.+... +...+++..+.+||+++|+
T Consensus 273 l~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 309 (322)
T 3k6k_A 273 LKIWPDMPHVFQMYGKFVNAADISIKEICHWISARIS 309 (322)
T ss_dssp EEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHTTCC
T ss_pred EEEECCCccccccccccChHHHHHHHHHHHHHHHHHh
Confidence 99999999987532 2345788999999999874
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-19 Score=215.55 Aligned_cols=315 Identities=11% Similarity=0.044 Sum_probs=193.3
Q ss_pred EEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCC
Q 003363 99 WTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENES 178 (826)
Q Consensus 99 ~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~ 178 (826)
...+.+||||+.+ +. + ....++++++.+. +..++.... ......+..++|||||++|||.....+..
T Consensus 19 ~~~~~~spdg~~~-~~-~--------~dg~i~~~d~~~g--~~~~~~~~~-~~~~~~v~~~~~SpDg~~l~~~~~~~~~~ 85 (723)
T 1xfd_A 19 DPEAKWISDTEFI-YR-E--------QKGTVRLWNVETN--TSTVLIEGK-KIESLRAIRYEISPDREYALFSYNVEPIY 85 (723)
T ss_dssp CCCCCBSSSSCBC-CC-C--------SSSCEEEBCGGGC--CCEEEECTT-TTTTTTCSEEEECTTSSEEEEEESCCCCS
T ss_pred ccccEEcCCCcEE-EE-e--------CCCCEEEEECCCC--cEEEEeccc-cccccccceEEECCCCCEEEEEecCccce
Confidence 4456789999955 32 1 1236777776433 333333221 00001378899999999999997654221
Q ss_pred -----CeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCC
Q 003363 179 -----PIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNS 252 (826)
Q Consensus 179 -----~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (826)
..+++.+ .+++.+++.... .... +...++|||||++|||++.
T Consensus 86 ~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~------~~~~~~~SPdG~~la~~~~------------------------- 133 (723)
T 1xfd_A 86 QHSYTGYYVLSKIPHGDPQSLDPPE-VSNA------KLQYAGWGPKGQQLIFIFE------------------------- 133 (723)
T ss_dssp SSCCCSEEEEEESSSCCCEECCCTT-CCSC------CCSBCCBCSSTTCEEEEET-------------------------
T ss_pred eecceeeEEEEECCCCceEeccCCc-cccc------cccccEECCCCCEEEEEEC-------------------------
Confidence 3455444 445544333221 1111 1268999999999999843
Q ss_pred CCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCC-CC----------------ccceEEEeeCCCCCccEEEE
Q 003363 253 WKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-SL----------------SVGQVVWAPLNEGLHQYLVF 315 (826)
Q Consensus 253 ~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~-~~----------------~~~~~~wSPDg~~~~~~lvf 315 (826)
.+|+++|+++|+.++++.... .. ....++|||||+. |+|
T Consensus 134 --------------------~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~----la~ 189 (723)
T 1xfd_A 134 --------------------NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTR----LAY 189 (723)
T ss_dssp --------------------TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSE----EEE
T ss_pred --------------------CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCE----EEE
Confidence 469999999998887741111 11 1257999999999 999
Q ss_pred EeecCcce-ee--------------eeeeec----cCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCC-----
Q 003363 316 VGWSSETR-KL--------------GIKYCY----NRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTES----- 370 (826)
Q Consensus 316 ~~~~~~~~-~~--------------g~~~~~----~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~----- 370 (826)
.+...... .. .+.+.. +....|+++|+ .+++ .+.|+.+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~-----------------~~~~~~~~l~~~~~~~~ 252 (723)
T 1xfd_A 190 AAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL-----------------NGPTHDLEMMPPDDPRM 252 (723)
T ss_dssp EEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES-----------------SSSCCCEECCCCCCGGG
T ss_pred EEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEEC-----------------CCCceeEEeeCCccCCC
Confidence 87543210 00 000100 12237999998 5665 3666653
Q ss_pred -CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccC-CCCC
Q 003363 371 -ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS-SILS 448 (826)
Q Consensus 371 -~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~-~~~~ 448 (826)
...+..+.|||||+.|++.+.+. .....|+++|+.+++...+.... ... |.. ....
T Consensus 253 ~~~~~~~~~~SpDg~~l~~~~~~~-------~~~~~i~~~d~~~g~~~~~~~~~----------~~~-----~~~~~~~~ 310 (723)
T 1xfd_A 253 REYYITMVKWATSTKVAVTWLNRA-------QNVSILTLCDATTGVCTKKHEDE----------SEA-----WLHRQNEE 310 (723)
T ss_dssp SSEEEEEEEESSSSEEEEEEEETT-------SCEEEEEEEETTTCCEEEEEEEE----------CSS-----CCCCCCCC
T ss_pred ccceeEEEEEeCCCeEEEEEEcCC-------CCeEEEEEEeCCCCcceEEEEec----------cCC-----EEeccCCC
Confidence 44567899999999887776653 23467999999886643222110 000 000 0136
Q ss_pred CccccCCCEEEEE-EEeCC----eEEEEEEE-CCCCc---EEEecCCCCCee-eEEEeecCCEEEEEEeCCC-CCCeEEE
Q 003363 449 NPWLSDGCTMLLS-SIWGS----SQVIISVN-VSSGE---LLRITPAESNFS-WSLLTLDGDNIIAVSSSPV-DVPQVKY 517 (826)
Q Consensus 449 ~~ws~Dg~~l~~~-~~~~~----~~~l~~vd-l~tg~---~~~lt~~~~~~~-~~~~s~dg~~l~~~~s~~~-~p~~l~~ 517 (826)
+.|||||+.|++. +...+ ..+||.+| ..+++ .+.|+.+...+. ...|++||+.|++...... .-..||.
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 7899999999887 44555 67899999 67777 778876544433 3579999999988776531 2345666
Q ss_pred Eeec
Q 003363 518 GYFV 521 (826)
Q Consensus 518 ~~~~ 521 (826)
+++.
T Consensus 391 ~~~~ 394 (723)
T 1xfd_A 391 ANTV 394 (723)
T ss_dssp ECSS
T ss_pred EeCC
Confidence 6543
|
| >3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-20 Score=196.90 Aligned_cols=228 Identities=19% Similarity=0.204 Sum_probs=157.8
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CCccchHHHHHHHH-CCcEEEEECCCCCCCCchhhhhcCCCCCCcch
Q 003363 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~-~~~~~~~~~~~la~-~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~ 651 (826)
.++.+.+|.|.+ .++.|+||++|||++.. ....|...+..|++ .||.|+++||||.+++. ....
T Consensus 75 ~~i~~~iy~P~~---~~~~p~vv~~HGGg~~~g~~~~~~~~~~~La~~~g~~Vv~~Dyrg~~~~~-----------~p~~ 140 (323)
T 3ain_A 75 TNIKARVYYPKT---QGPYGVLVYYHGGGFVLGDIESYDPLCRAITNSCQCVTISVDYRLAPENK-----------FPAA 140 (323)
T ss_dssp SEEEEEEEECSS---CSCCCEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTSC-----------TTHH
T ss_pred CeEEEEEEecCC---CCCCcEEEEECCCccccCChHHHHHHHHHHHHhcCCEEEEecCCCCCCCC-----------Ccch
Confidence 379999999973 56789999999987433 34467778888876 49999999999965431 1235
Q ss_pred HHHHHHHHHHHHHcCC-C-CCCcEEEEEecchHHHHHHHHHhCCCce---eEEEecCCccchhhhcc----CCCCCCch-
Q 003363 652 VNDVLTAIDHVIDMGL-A-NPSKVTVVGGSHGGFLTTHLIGQAPDKF---VAAAARNPLCNLALMVG----TTDIPDWC- 721 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~-~-d~~rv~l~G~S~GG~~a~~~a~~~p~~~---~a~v~~~p~~~~~~~~~----~~~~~~~~- 721 (826)
++|+.++++|+.+... + |+++|+|+|+|+||.+++.++.++|++. +++|+.+|+.+...... ......+.
T Consensus 141 ~~d~~~~~~~l~~~~~~lgd~~~i~l~G~S~GG~lA~~~a~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~~~~~~~l~~ 220 (323)
T 3ain_A 141 VVDSFDALKWVYNNSEKFNGKYGIAVGGDSAGGNLAAVTAILSKKENIKLKYQVLIYPAVSFDLITKSLYDNGEGFFLTR 220 (323)
T ss_dssp HHHHHHHHHHHHHTGGGGTCTTCEEEEEETHHHHHHHHHHHHHHHTTCCCSEEEEESCCCSCCSCCHHHHHHSSSSSSCH
T ss_pred HHHHHHHHHHHHHhHHHhCCCceEEEEecCchHHHHHHHHHHhhhcCCCceeEEEEeccccCCCCCccHHHhccCCCCCH
Confidence 7899999999988631 1 7899999999999999999998887765 89999999876421100 00000000
Q ss_pred -hhhhccCcCCccCCCCCChhhHHHHhhcCcccc-cCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 003363 722 -YVESYGSKGKDSFTESPSVEDLTRFHSKSPISH-ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 799 (826)
Q Consensus 722 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~ 799 (826)
....+. ..+.... .. ......+|+.. +..+ +|+||++|+.|..+ .++..++++|+..|++++++++++
T Consensus 221 ~~~~~~~----~~~~~~~--~~-~~~~~~sp~~~~l~~l-~P~lii~G~~D~l~--~~~~~~a~~l~~ag~~~~~~~~~g 290 (323)
T 3ain_A 221 EHIDWFG----QQYLRSF--AD-LLDFRFSPILADLNDL-PPALIITAEHDPLR--DQGEAYANKLLQSGVQVTSVGFNN 290 (323)
T ss_dssp HHHHHHH----HHHCSSG--GG-GGCTTTCGGGSCCTTC-CCEEEEEETTCTTH--HHHHHHHHHHHHTTCCEEEEEETT
T ss_pred HHHHHHH----HHhCCCC--cc-cCCcccCcccCcccCC-CHHHEEECCCCccH--HHHHHHHHHHHHcCCCEEEEEECC
Confidence 000000 0000000 00 00012234332 2222 59999999999987 688899999999999999999999
Q ss_pred CCCCCCCC----CCHHHHHHHHHHHHHHHc
Q 003363 800 DVHGIERP----QSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 800 ~~H~~~~~----~~~~~~~~~i~~w~~~~l 825 (826)
++|.+... +...+++..+.+||+++|
T Consensus 291 ~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l 320 (323)
T 3ain_A 291 VIHGFVSFFPFIEQGRDAIGLIGYVLRKVF 320 (323)
T ss_dssp CCTTGGGGTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CccccccccCcCHHHHHHHHHHHHHHHHHh
Confidence 99997642 334578899999999876
|
| >3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-20 Score=193.73 Aligned_cols=233 Identities=12% Similarity=0.067 Sum_probs=156.2
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH---HHHHHHHCCcEEEEECCCCCC-----------CCc
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSL-----------GFG 636 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vl~~d~rG~~-----------g~G 636 (826)
..|.++...+|.|++++..+++|+||++||++... ..|.. ..+.+++.||.|+++|.++.+ |.|
T Consensus 24 ~~g~~~~~~v~~P~~~~~~~~~P~vv~lHG~~~~~--~~~~~~~~~~~~~~~~g~~vv~~d~~~~g~~~~~~~~~~~g~g 101 (280)
T 3ls2_A 24 STHCTMRFAVFLPPGASESNKVPVLYWLSGLTCTD--ENFMQKAGAFKKAAELGIAIVAPDTSPRGDNVPNEDSYDFAQG 101 (280)
T ss_dssp TTTEEEEEEEEECTTCBTTBCEEEEEEECCTTCCS--HHHHHHSCCHHHHHHHTCEEEECCSSCCSTTSCCCSCTTSSTT
T ss_pred hcCCceEEEEEcCCCCCCCCCcCEEEEeCCCCCCh--hhhhcchhHHHHHhhCCeEEEEeCCcccccccccccccccccC
Confidence 45788999999999876678899999999987552 23332 355677889999999976422 111
Q ss_pred hhhhhcCCC-CC-Ccch-HHHHH-HHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhc
Q 003363 637 EEALQSLPG-KV-GSQD-VNDVL-TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712 (826)
Q Consensus 637 ~~~~~~~~~-~~-~~~~-~~D~~-~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~ 712 (826)
..+....+. .+ .... ...+. +.+.++.+...+ .++++|+|||+||++++.++.++|++|+++++.+|+++.....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~~s~~~~~~~~~ 180 (280)
T 3ls2_A 102 AGFYVNATQAPYNTHFNMYDYVVNELPALIEQHFPV-TSTKAISGHSMGGHGALMIALKNPQDYVSASAFSPIVNPINCP 180 (280)
T ss_dssp CCTTCBCCSTTTTTTCBHHHHHHTHHHHHHHHHSSE-EEEEEEEEBTHHHHHHHHHHHHSTTTCSCEEEESCCSCGGGSH
T ss_pred CccccccccccccccccHHHHHHHHHHHHHHhhCCC-CCCeEEEEECHHHHHHHHHHHhCchhheEEEEecCccCcccCc
Confidence 211111110 00 0111 22222 334444444333 4899999999999999999999999999999999987653210
Q ss_pred cCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCC----CCcEEEEEeCCCCCCCcHH-HHHHHHHHHh
Q 003363 713 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV----KTPTIFLLGAQDLRVPVSN-GLQYARALRE 787 (826)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i----~~PvLii~G~~D~~vp~~~-~~~~~~~l~~ 787 (826)
.. ...+...++. ....+...+|...+.++ .+|+|++||+.|.+++.+. +++++++|++
T Consensus 181 ~~----~~~~~~~~g~-------------~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~l~~ 243 (280)
T 3ls2_A 181 WG----VKAFTGYLGA-------------DKTTWAQYDSCKLMAKAEQSNYLPMLVSQGDADNFLDEQLKPQNLVAVAKQ 243 (280)
T ss_dssp HH----HHHHHHHHCS-------------CGGGTGGGCHHHHHHTCCGGGCCCEEEEEETTCTTCCCCCCHHHHHHHHHH
T ss_pred ch----hhHHHhhcCc-------------hHHHHHhcCHHHHHHhccccCCCcEEEEEeCCCcccCCchhHHHHHHHHHH
Confidence 00 0000011111 01123344555555554 4599999999999999854 8899999999
Q ss_pred CCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 788 KGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 788 ~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
.|++++++++|+++|.+.. .......+++|+.++|+
T Consensus 244 ~g~~~~~~~~~g~~H~~~~---~~~~~~~~~~~~~~~l~ 279 (280)
T 3ls2_A 244 KDYPLTLEMQTGYDHSYFF---ISSFIDQHLVFHHQYLS 279 (280)
T ss_dssp HTCCEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHHC
T ss_pred hCCCceEEEeCCCCCchhh---HHHHHHHHHHHHHHHhc
Confidence 9999999999999998642 23567788999999875
|
| >2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A | Back alignment and structure |
|---|
Probab=99.84 E-value=8.4e-21 Score=204.56 Aligned_cols=232 Identities=16% Similarity=0.173 Sum_probs=154.7
Q ss_pred eeEEEEEEecCCC-CCCCCCcEEEEEcCCCCCCCCc---cchHHHHHHH-HCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 574 KPFEAIFVSSSHK-KDCSCDPLIVVLHGGPHSVSLS---SYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 574 ~~l~~~~~~P~~~-~~~~~~P~vv~~HGg~~~~~~~---~~~~~~~~la-~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
..+.+.+|.|++. ...++.|+||++|||++..... .|...+..|+ +.||.|+++||||.+++. .
T Consensus 64 ~~~~~~~~~P~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~~~la~~~g~~vv~~d~rg~~~~~-----------~ 132 (338)
T 2o7r_A 64 HNTFVRLFLPRHALYNSAKLPLVVYFHGGGFILFSAASTIFHDFCCEMAVHAGVVIASVDYRLAPEHR-----------L 132 (338)
T ss_dssp TTEEEEEEEEGGGGGSSCCEEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTCEEEEEECCCTTTTC-----------T
T ss_pred CCeEEEEEeCCCCCcCCCCceEEEEEcCCcCcCCCCCchhHHHHHHHHHHHCCcEEEEecCCCCCCCC-----------C
Confidence 3466678888753 2357889999999988654332 2667788887 789999999999965421 1
Q ss_pred cchHHHHHHHHHHHHHcC------CCCCCcEEEEEecchHHHHHHHHHhCCC--------ceeEEEecCCccchhhhcc-
Q 003363 649 SQDVNDVLTAIDHVIDMG------LANPSKVTVVGGSHGGFLTTHLIGQAPD--------KFVAAAARNPLCNLALMVG- 713 (826)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~------~~d~~rv~l~G~S~GG~~a~~~a~~~p~--------~~~a~v~~~p~~~~~~~~~- 713 (826)
...++|+.++++|+.++. .+|.++|+|+|||+||.+++.++.++|+ +++++|+.+|+.+......
T Consensus 133 ~~~~~d~~~~~~~l~~~~~~~~~~~~d~~~v~l~G~S~GG~ia~~~a~~~~~~~~~~~~~~v~~~vl~~p~~~~~~~~~~ 212 (338)
T 2o7r_A 133 PAAYDDAMEALQWIKDSRDEWLTNFADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKGLVLDEPGFGGSKRTGS 212 (338)
T ss_dssp THHHHHHHHHHHHHHTCCCHHHHHHEEEEEEEEEEETHHHHHHHHHHHHHHTTHHHHTTCCEEEEEEESCCCCCSSCCHH
T ss_pred chHHHHHHHHHHHHHhCCcchhhccCCcceEEEEEeCccHHHHHHHHHHhccccccCCCCceeEEEEECCccCCCcCChh
Confidence 235889999999998762 2577899999999999999999999888 8999999999875421100
Q ss_pred ---CCCCCC--chhhhhccCcCCccCCCCCChhhHHHHhhcCcc---------cccCCCCCcEEEEEeCCCCCCCcHHHH
Q 003363 714 ---TTDIPD--WCYVESYGSKGKDSFTESPSVEDLTRFHSKSPI---------SHISKVKTPTIFLLGAQDLRVPVSNGL 779 (826)
Q Consensus 714 ---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~---------~~~~~i~~PvLii~G~~D~~vp~~~~~ 779 (826)
....+. ......+... .+......+ ....+|. ..+.++.+|+|+++|++|..++ ++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~P~Lvi~G~~D~~~~--~~~ 283 (338)
T 2o7r_A 213 ELRLANDSRLPTFVLDLIWEL---SLPMGADRD----HEYCNPTAESEPLYSFDKIRSLGWRVMVVGCHGDPMID--RQM 283 (338)
T ss_dssp HHHTTTCSSSCHHHHHHHHHH---HSCTTCCTT----STTTCCC----CCTHHHHHHHHTCEEEEEEETTSTTHH--HHH
T ss_pred hhccCCCcccCHHHHHHHHHH---hCCCCCCCC----CcccCCCCCCcccccHhhhcCCCCCEEEEECCCCcchH--HHH
Confidence 000000 0000000000 000000000 0001111 1222345699999999999985 567
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCCCCCCC--CCHHHHHHHHHHHHHHHc
Q 003363 780 QYARALREKGVETKVIVFPNDVHGIERP--QSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 780 ~~~~~l~~~g~~~~~~~~p~~~H~~~~~--~~~~~~~~~i~~w~~~~l 825 (826)
+++++|++.+.+++++++++++|.+... +...++++.+.+||++++
T Consensus 284 ~~~~~l~~~~~~~~~~~~~g~gH~~~~~~~~~~~~~~~~i~~Fl~~~~ 331 (338)
T 2o7r_A 284 ELAERLEKKGVDVVAQFDVGGYHAVKLEDPEKAKQFFVILKKFVVDSC 331 (338)
T ss_dssp HHHHHHHHTTCEEEEEEESSCCTTGGGTCHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHCCCcEEEEEECCCceEEeccChHHHHHHHHHHHHHHHhhc
Confidence 8899999999999999999999987543 233578899999998875
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-20 Score=204.87 Aligned_cols=239 Identities=15% Similarity=0.187 Sum_probs=160.9
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHH-HHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcc
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~-~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~ 650 (826)
+|..+.++++.+ +.++.|+||++||+... ...+.... ..+.++||.|+++|+||.+. +.... ......
T Consensus 143 ~~~~l~~~~~~~----~~~~~p~vv~~HG~~~~--~~~~~~~~~~~~~~~g~~vi~~D~~G~G~---s~~~~--~~~~~~ 211 (405)
T 3fnb_A 143 EGELLPGYAIIS----EDKAQDTLIVVGGGDTS--REDLFYMLGYSGWEHDYNVLMVDLPGQGK---NPNQG--LHFEVD 211 (405)
T ss_dssp TTEEEEEEEECC----SSSCCCEEEEECCSSCC--HHHHHHHTHHHHHHTTCEEEEECCTTSTT---GGGGT--CCCCSC
T ss_pred CCeEEEEEEEcC----CCCCCCEEEEECCCCCC--HHHHHHHHHHHHHhCCcEEEEEcCCCCcC---CCCCC--CCCCcc
Confidence 467899988843 34556999999997543 33443333 35668999999999999554 32211 122334
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC-----CCCCCchhhhh
Q 003363 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-----TDIPDWCYVES 725 (826)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~-----~~~~~~~~~~~ 725 (826)
...|+.++++++.... ++|+|+|||+||++++.++.++| +++++|+.+|+.++...... ...+.+.....
T Consensus 212 ~~~d~~~~~~~l~~~~----~~v~l~G~S~GG~~a~~~a~~~p-~v~~~v~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~ 286 (405)
T 3fnb_A 212 ARAAISAILDWYQAPT----EKIAIAGFSGGGYFTAQAVEKDK-RIKAWIASTPIYDVAEVFRISFSTALKAPKTILKWG 286 (405)
T ss_dssp THHHHHHHHHHCCCSS----SCEEEEEETTHHHHHHHHHTTCT-TCCEEEEESCCSCHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHhcC----CCEEEEEEChhHHHHHHHHhcCc-CeEEEEEecCcCCHHHHHHHhhhhhhhCcHHHHHHH
Confidence 4788999999976653 78999999999999999999988 89999999999887543210 00111100000
Q ss_pred ccC-------------cCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCE
Q 003363 726 YGS-------------KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVET 792 (826)
Q Consensus 726 ~~~-------------~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~ 792 (826)
... .....+...........+....+...+.++++|+|+++|++|..+|+.++.++++.+++.+.++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~v~~~~~~~l~~~l~~~~~~~ 366 (405)
T 3fnb_A 287 SKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNKIDVPSLFLVGAGEDSELMRQSQVLYDNFKQRGIDV 366 (405)
T ss_dssp -----CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHHHCCCCCGGGCCSCEEEEEETTSCHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHhhccchhHHHHHHHhhhhcCCCCHHHHHHHHHHhhcccCHhhCCCCEEEEecCCCcCCChHHHHHHHHHhccCCCCc
Confidence 000 0000000001111122333344444478899999999999999999999999999999998999
Q ss_pred EEEEeCCCCCCC--CCCCCHHHHHHHHHHHHHHHcC
Q 003363 793 KVIVFPNDVHGI--ERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 793 ~~~~~p~~~H~~--~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
+++++++..|.. ...+....+.+.|.+||+++|+
T Consensus 367 ~l~~~~~~~h~gh~~~~~~~~~~~~~i~~fL~~~l~ 402 (405)
T 3fnb_A 367 TLRKFSSESGADAHCQVNNFRLMHYQVFEWLNHIFK 402 (405)
T ss_dssp EEEEECTTTTCCSGGGGGGHHHHHHHHHHHHHHHHC
T ss_pred eEEEEcCCccchhccccchHHHHHHHHHHHHHHHhC
Confidence 999997666542 2355566888999999999874
|
| >3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, tuberculosis, O LIPW, heroin esterase; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=200.77 Aligned_cols=230 Identities=17% Similarity=0.228 Sum_probs=161.7
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CccchHHHHHHH-HCCcEEEEECCCCCCCCchhhhhcCC
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLP 644 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~-~~~~~~~~~~la-~~G~~Vl~~d~rG~~g~G~~~~~~~~ 644 (826)
++...+|.++.+++|.|.+ ++.|+||++|||++... ...+...+..|+ +.||.|+++|||+++++
T Consensus 64 ~i~~~~G~~i~~~~~~P~~----~~~p~vv~~HGgG~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~--------- 130 (317)
T 3qh4_A 64 VVTGEAGRPVPVRIYRAAP----TPAPVVVYCHAGGFALGNLDTDHRQCLELARRARCAVVSVDYRLAPEH--------- 130 (317)
T ss_dssp EEECTTSCEEEEEEEECSC----SSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTS---------
T ss_pred EecCCCCCeEEEEEEecCC----CCCcEEEEECCCcCccCChHHHHHHHHHHHHHcCCEEEEecCCCCCCC---------
Confidence 4445567789999999973 67899999999875432 335666777776 56999999999986653
Q ss_pred CCCCcchHHHHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHhCCC----ceeEEEecCCccchhhhccCCCC
Q 003363 645 GKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDI 717 (826)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~p~~~~~~~~~~~~~ 717 (826)
.....++|+.++++|+.++ ..+|++||+|+|+|+||.+++.++.++++ .++++++.+|+++....
T Consensus 131 --~~p~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~------ 202 (317)
T 3qh4_A 131 --PYPAALHDAIEVLTWVVGNATRLGFDARRLAVAGSSAGATLAAGLAHGAADGSLPPVIFQLLHQPVLDDRPT------ 202 (317)
T ss_dssp --CTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTSSCCCCEEEEESCCCCSSCC------
T ss_pred --CCchHHHHHHHHHHHHHhhHHhhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCeeEEEEECceecCCCC------
Confidence 2234588999999999885 44788999999999999999999987655 48999999998875310
Q ss_pred CCchhhhhccCcCCccCCCCCC-hhhHHHHh-------hcCcccccCCC--CCcEEEEEeCCCCCCCcHHHHHHHHHHHh
Q 003363 718 PDWCYVESYGSKGKDSFTESPS-VEDLTRFH-------SKSPISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALRE 787 (826)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~sp~~~~~~i--~~PvLii~G~~D~~vp~~~~~~~~~~l~~ 787 (826)
.. . ..+.. ........ ......+. ..+|... ..+ -+|+||+||+.|..+ .++..++++|++
T Consensus 203 ~~--~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~l~~lpP~li~~G~~D~~~--~~~~~~a~~l~~ 273 (317)
T 3qh4_A 203 AS--R-SEFRA---TPAFDGEAASLMWRHYLAGQTPSPESVPGRR-GQLAGLPATLITCGEIDPFR--DEVLDYAQRLLG 273 (317)
T ss_dssp HH--H-HHTTT---CSSSCHHHHHHHHHHHHTTCCCCTTTCGGGC-SCCTTCCCEEEEEEEESTTH--HHHHHHHHHHHH
T ss_pred cC--H-HHhcC---CCCcCHHHHHHHHHHhcCCCCCCcccCCCcc-cccCCCCceeEEecCcCCCc--hhHHHHHHHHHH
Confidence 00 0 00000 00000000 00011111 1122211 122 259999999999987 488899999999
Q ss_pred CCCCEEEEEeCCCCCCCCC----CCCHHHHHHHHHHHHHHHcC
Q 003363 788 KGVETKVIVFPNDVHGIER----PQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 788 ~g~~~~~~~~p~~~H~~~~----~~~~~~~~~~i~~w~~~~l~ 826 (826)
.|+++++++||+++|++.. .+...+++..+.+||+++|.
T Consensus 274 ~g~~~~l~~~~g~~H~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 316 (317)
T 3qh4_A 274 AGVSTELHIFPRACHGFDSLLPEWTTSQRLFAMQGHALADAFY 316 (317)
T ss_dssp TTCCEEEEEEEEEETTHHHHCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCEEEEEeCCCccchhhhcCCchHHHHHHHHHHHHHHHHhC
Confidence 9999999999999998642 23446788999999999874
|
| >3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-20 Score=195.57 Aligned_cols=234 Identities=10% Similarity=0.019 Sum_probs=157.8
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH---HHHHHHHCCcEEEEECCCCCCCCchhh-------
Q 003363 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEA------- 639 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vl~~d~rG~~g~G~~~------- 639 (826)
...|.++...+|.|+++. .+++|+||++||++.. ...|.. ..+.+.+.||.|+++|+||.+......
T Consensus 23 ~~~g~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~--~~~~~~~~~~~~~~~~~g~~vv~~d~~g~G~s~~~~~~~~~~g 99 (278)
T 3e4d_A 23 ETLKSEMTFAVYVPPKAI-HEPCPVVWYLSGLTCT--HANVMEKGEYRRMASELGLVVVCPDTSPRGNDVPDELTNWQMG 99 (278)
T ss_dssp TTTTEEEEEEEEECGGGG-TSCEEEEEEECCTTCC--SHHHHHHSCCHHHHHHHTCEEEECCSSCCSTTSCCCTTCTTSB
T ss_pred cccCCcceEEEEcCCCCC-CCCCCEEEEEcCCCCC--ccchhhcccHHHHHhhCCeEEEecCCcccCccccccccccccc
Confidence 345788999999998643 6789999999998755 334433 344566779999999999854321110
Q ss_pred -----hhcCCC-C-CCcchHH-HHH-HHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh
Q 003363 640 -----LQSLPG-K-VGSQDVN-DVL-TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710 (826)
Q Consensus 640 -----~~~~~~-~-~~~~~~~-D~~-~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~ 710 (826)
...... . ....... .+. ++++++.+...+|+++|+|+|||+||++++.++.++|++|+++++.+|+++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~ 179 (278)
T 3e4d_A 100 KGAGFYLDATEEPWSEHYQMYSYVTEELPALIGQHFRADMSRQSIFGHSMGGHGAMTIALKNPERFKSCSAFAPIVAPSS 179 (278)
T ss_dssp TTBCTTSBCCSTTTTTTCBHHHHHHTHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSCEEEESCCSCGGG
T ss_pred CCccccccCCcCcccchhhHHHHHHHHHHHHHHhhcCCCcCCeEEEEEChHHHHHHHHHHhCCcccceEEEeCCcccccC
Confidence 000000 0 0011222 222 456666666557889999999999999999999999999999999999887542
Q ss_pred hccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCC--CCcEEEEEeCCCCCCCcHH-HHHHHHHHHh
Q 003363 711 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV--KTPTIFLLGAQDLRVPVSN-GLQYARALRE 787 (826)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i--~~PvLii~G~~D~~vp~~~-~~~~~~~l~~ 787 (826)
... ....+...++. . ...+...+|...+.++ .+|+|++||++|..+|... +..++++|++
T Consensus 180 ~~~----~~~~~~~~~~~---------~----~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~l~~ 242 (278)
T 3e4d_A 180 ADW----SEPALEKYLGA---------D----RAAWRRYDACSLVEDGARFPEFLIDQGKADSFLEKGLRPWLFEEAIKG 242 (278)
T ss_dssp CTT----THHHHHHHHCS---------C----GGGGGGGCHHHHHHTTCCCSEEEEEEETTCTTHHHHTCTHHHHHHHTT
T ss_pred Ccc----chhhHHHhcCC---------c----HHHHHhcChhhHhhcCCCCCcEEEEecCCCcccccchhHHHHHHHHHH
Confidence 110 00000111111 0 1123344555444444 4699999999999997532 6889999999
Q ss_pred CCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 788 KGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 788 ~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
.|++++++++||++|.+.. .......+++|+.++|+
T Consensus 243 ~g~~~~~~~~~g~~H~~~~---~~~~~~~~l~~~~~~l~ 278 (278)
T 3e4d_A 243 TDIGLTLRMHDRYDHSYYF---ISTFMDDHLKWHAERLG 278 (278)
T ss_dssp SSCEEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHHC
T ss_pred cCCCceEEEeCCCCcCHHH---HHHHHHHHHHHHHHhcC
Confidence 9999999999999998642 23567788999999885
|
| >4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=187.86 Aligned_cols=189 Identities=15% Similarity=0.139 Sum_probs=133.5
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHH---c
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID---M 665 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~---~ 665 (826)
.+..++||++||.+.. ...|...++.|...|+.|++||.+|.+.|+..+.... ......+++..+.++.+++ .
T Consensus 19 ~~a~~~Vv~lHG~G~~--~~~~~~l~~~l~~~~~~v~~P~~~g~~w~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~ 94 (210)
T 4h0c_A 19 QRAKKAVVMLHGRGGT--AADIISLQKVLKLDEMAIYAPQATNNSWYPYSFMAPV--QQNQPALDSALALVGEVVAEIEA 94 (210)
T ss_dssp TTCSEEEEEECCTTCC--HHHHHGGGGTSSCTTEEEEEECCGGGCSSSSCTTSCG--GGGTTHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCC--HHHHHHHHHHhCCCCeEEEeecCCCCCccccccCCCc--ccchHHHHHHHHHHHHHHHHHHH
Confidence 4567899999995433 3345555666777899999999988655443322111 1111223444444443332 2
Q ss_pred CCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHH
Q 003363 666 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR 745 (826)
Q Consensus 666 ~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (826)
..+|++||+|+|+|+||++++.++.++|++++++|+.++....... ....
T Consensus 95 ~~i~~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~vv~~sg~l~~~~~---------------------------~~~~--- 144 (210)
T 4h0c_A 95 QGIPAEQIYFAGFSQGACLTLEYTTRNARKYGGIIAFTGGLIGQEL---------------------------AIGN--- 144 (210)
T ss_dssp TTCCGGGEEEEEETHHHHHHHHHHHHTBSCCSEEEEETCCCCSSSC---------------------------CGGG---
T ss_pred hCCChhhEEEEEcCCCcchHHHHHHhCcccCCEEEEecCCCCChhh---------------------------hhhh---
Confidence 3489999999999999999999999999999999988874310000 0000
Q ss_pred HhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 746 FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 746 ~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
......++|+|++||++|++||++.++++++.|++.|.++++++||+.+|.+. .+.++.+.+||.|
T Consensus 145 -------~~~~~~~~Pvl~~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~~~ypg~gH~i~-----~~el~~i~~wL~k 210 (210)
T 4h0c_A 145 -------YKGDFKQTPVFISTGNPDPHVPVSRVQESVTILEDMNAAVSQVVYPGRPHTIS-----GDEIQLVNNTILK 210 (210)
T ss_dssp -------CCBCCTTCEEEEEEEESCTTSCHHHHHHHHHHHHHTTCEEEEEEEETCCSSCC-----HHHHHHHHHTTTC
T ss_pred -------hhhhccCCceEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCcC-----HHHHHHHHHHHcC
Confidence 00112257999999999999999999999999999999999999999999885 3456778888754
|
| >2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.1e-20 Score=196.64 Aligned_cols=231 Identities=18% Similarity=0.228 Sum_probs=157.0
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CCccchHHHHHHHHC-CcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSSV-GYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~-~~~~~~~~~~~la~~-G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
.+| .+.+.+|.|.+ ..+.|+||++|||++.. ....|...+..|+++ ||.|+++||||.+++. .
T Consensus 56 ~~g-~i~~~~~~p~~---~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~d~rg~g~~~-----------~ 120 (311)
T 2c7b_A 56 SGG-SIRARVYFPKK---AAGLPAVLYYHGGGFVFGSIETHDHICRRLSRLSDSVVVSVDYRLAPEYK-----------F 120 (311)
T ss_dssp TTE-EEEEEEEESSS---CSSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTCEEEEECCCCTTTSC-----------T
T ss_pred CCC-cEEEEEEecCC---CCCCcEEEEECCCcccCCChhhhHHHHHHHHHhcCCEEEEecCCCCCCCC-----------C
Confidence 344 89999999973 44579999999987422 244677788888875 9999999999965531 1
Q ss_pred cchHHHHHHHHHHHHHcC---CCCCCcEEEEEecchHHHHHHHHHhCCC----ceeEEEecCCccchhhh--------cc
Q 003363 649 SQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALM--------VG 713 (826)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~p~~~~~~~--------~~ 713 (826)
....+|+.++++++.+.. .+|+++|+|+|||+||.+++.++.++|+ .++++|+.+|+.++... ..
T Consensus 121 ~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~~~~~ 200 (311)
T 2c7b_A 121 PTAVEDAYAALKWVADRADELGVDPDRIAVAGDSAGGNLAAVVSILDRNSGEKLVKKQVLIYPVVNMTGVPTASLVEFGV 200 (311)
T ss_dssp THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCCSSCCCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhHHHhCCCchhEEEEecCccHHHHHHHHHHHHhcCCCCceeEEEECCccCCccccccCCccHHH
Confidence 234789999999988752 3677899999999999999999987765 59999999998773110 00
Q ss_pred CCCCC-CchhhhhccCcCCccCCCCCChhhHHHHhhcCcccc-cCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCC
Q 003363 714 TTDIP-DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISH-ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVE 791 (826)
Q Consensus 714 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~ 791 (826)
..... .......+. ..+...+. . ......+|+.. +..+ +|+|+++|+.|..++ +...++++++..|.+
T Consensus 201 ~~~~~~~~~~~~~~~----~~~~~~~~-~--~~~~~~~p~~~~l~~~-~P~lii~G~~D~~~~--~~~~~~~~l~~~g~~ 270 (311)
T 2c7b_A 201 AETTSLPIELMVWFG----RQYLKRPE-E--AYDFKASPLLADLGGL-PPALVVTAEYDPLRD--EGELYAYKMKASGSR 270 (311)
T ss_dssp CTTCSSCHHHHHHHH----HHHCSSTT-G--GGSTTTCGGGSCCTTC-CCEEEEEETTCTTHH--HHHHHHHHHHHTTCC
T ss_pred hccCCCCHHHHHHHH----HHhCCCCc-c--ccCcccCcccccccCC-CcceEEEcCCCCchH--HHHHHHHHHHHCCCC
Confidence 00000 000000000 00000000 0 00011233322 2333 499999999999884 667888999999999
Q ss_pred EEEEEeCCCCCCCCC----CCCHHHHHHHHHHHHHHHcC
Q 003363 792 TKVIVFPNDVHGIER----PQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 792 ~~~~~~p~~~H~~~~----~~~~~~~~~~i~~w~~~~l~ 826 (826)
++++++++++|.+.. .+...++...+.+||+++++
T Consensus 271 ~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 309 (311)
T 2c7b_A 271 AVAVRFAGMVHGFVSFYPFVDAGREALDLAAASIRSGLQ 309 (311)
T ss_dssp EEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEeCCCccccccccccCHHHHHHHHHHHHHHHHHhc
Confidence 999999999998762 23345788999999999874
|
| >1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-20 Score=202.21 Aligned_cols=236 Identities=18% Similarity=0.171 Sum_probs=160.8
Q ss_pred eccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-Cc--cchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCC
Q 003363 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 644 (826)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~-~~--~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~ 644 (826)
+...+|..+.+.+|.|.+ ..++.|+||++|||++... .. .|......|+++||.|+++||||.+++..
T Consensus 87 ~~~~~g~~l~~~v~~p~~--~~~~~p~vv~iHGgg~~~g~~~~~~~~~~~~~la~~g~~vv~~d~r~~gg~~~------- 157 (361)
T 1jkm_A 87 ILGVDGNEITLHVFRPAG--VEGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAWTAEG------- 157 (361)
T ss_dssp EECTTSCEEEEEEEEETT--CCSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSEETTE-------
T ss_pred eecCCCCeEEEEEEeCCC--CCCCCeEEEEEcCCccccCCCcccchhHHHHHHHhCCCEEEEEecCCCCCCCC-------
Confidence 344456689999999974 2237899999999874432 33 56667888988999999999999654321
Q ss_pred CCCCcchHHHHHHHHHHHHHcC-CCCCCcEEEEEecchHHHHHHHHHh-----CCCceeEEEecCCccchhhhcc----C
Q 003363 645 GKVGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQ-----APDKFVAAAARNPLCNLALMVG----T 714 (826)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~~-~~d~~rv~l~G~S~GG~~a~~~a~~-----~p~~~~a~v~~~p~~~~~~~~~----~ 714 (826)
.......+.|+.++++|+.++. ....++|+|+|||+||.+++.++.. +|++++++|+.+|+.+...... .
T Consensus 158 ~~~~~~~~~D~~~~~~~v~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~p~~i~~~il~~~~~~~~~~~~~~~~~ 237 (361)
T 1jkm_A 158 HHPFPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISGGYAWDHERRL 237 (361)
T ss_dssp ECCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCCCCTTSCHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHhhHHhcCCCeEEEEEECHHHHHHHHHHHHHHhcCCCcCcceEEEECCcccccccccccccc
Confidence 1223445789999999998762 1122399999999999999999987 7889999999999876510000 0
Q ss_pred CCCCCchhhhhccCcCCccCCCCCChhhHH----HH---------hhcCcc----cccCCCCCcEEEEEeCCCCCCCcHH
Q 003363 715 TDIPDWCYVESYGSKGKDSFTESPSVEDLT----RF---------HSKSPI----SHISKVKTPTIFLLGAQDLRVPVSN 777 (826)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---------~~~sp~----~~~~~i~~PvLii~G~~D~~vp~~~ 777 (826)
.....+. .. .. .+ ....... .+ ...+|. ..+.++. |+||++|++|..++ +
T Consensus 238 ~~~~~~~--~~-~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~l~-P~Lii~G~~D~~~~--~ 304 (361)
T 1jkm_A 238 TELPSLV--EN-DG----YF---IENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLP-PFVVAVNELDPLRD--E 304 (361)
T ss_dssp HHCTHHH--HT-TT----SS---SCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCC-CEEEEEETTCTTHH--H
T ss_pred ccCcchh--hc-cC----cc---cCHHHHHHHHHHhCCCCCCCCCcccCccccChhhHcCCC-ceEEEEcCcCcchh--h
Confidence 0000000 00 00 00 0000000 00 012333 2345555 99999999999986 8
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCCCCCCC-CC----CCH-HHHHHHHHHHHHHHc
Q 003363 778 GLQYARALREKGVETKVIVFPNDVHGIE-RP----QSD-FESFLNIGLWFKKYC 825 (826)
Q Consensus 778 ~~~~~~~l~~~g~~~~~~~~p~~~H~~~-~~----~~~-~~~~~~i~~w~~~~l 825 (826)
+..++++|++.|++++++++++++|.+. .. ... .++++.+.+||+++.
T Consensus 305 ~~~~~~~l~~~g~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~i~~fl~~~~ 358 (361)
T 1jkm_A 305 GIAFARRLARAGVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADRA 358 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCccCccccccccccHHHHHHHHHHHHHHHHhh
Confidence 8899999999999999999999999876 21 222 577889999998863
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=184.34 Aligned_cols=210 Identities=15% Similarity=0.070 Sum_probs=154.9
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCC---------
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK--------- 646 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~--------- 646 (826)
+..+++.|.+ +.|+||++||.+.. ...|...+..|+++||.|+++|+||.+...... ....
T Consensus 13 ~~~~~~~~~~-----~~~~vv~~hG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~---~~~~~~~~~~~~~ 82 (238)
T 1ufo_A 13 LSVLARIPEA-----PKALLLALHGLQGS--KEHILALLPGYAERGFLLLAFDAPRHGEREGPP---PSSKSPRYVEEVY 82 (238)
T ss_dssp EEEEEEEESS-----CCEEEEEECCTTCC--HHHHHHTSTTTGGGTEEEEECCCTTSTTSSCCC---CCTTSTTHHHHHH
T ss_pred EEEEEEecCC-----CccEEEEECCCccc--chHHHHHHHHHHhCCCEEEEecCCCCccCCCCC---CcccccchhhhHH
Confidence 4455777752 67999999997654 345666667788899999999999954432111 0000
Q ss_pred -CCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhh
Q 003363 647 -VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 725 (826)
Q Consensus 647 -~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~ 725 (826)
......+|+.++++++.+.+. ++++++|||+||.+++.++.++|+.++++++.++...... ....
T Consensus 83 ~~~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~-------~~~~---- 148 (238)
T 1ufo_A 83 RVALGFKEEARRVAEEAERRFG---LPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMKL-------PQGQ---- 148 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---CCEEEEEETHHHHHHHHHHHTTCCCSCEEEESCCSSCCCC-------CTTC----
T ss_pred HHHHHHHHHHHHHHHHHHhccC---CcEEEEEEChHHHHHHHHHHhccCcceEEEEecCCccchh-------hhhh----
Confidence 011236788888888877652 7899999999999999999999999999888776432110 0000
Q ss_pred ccCcCCccCCCCCChhhHHHHhhcCcccccCCC-CCcEEEEEeCCCCCCCcHHHHHHHHHHH-hCCC-CEEEEEeCCCCC
Q 003363 726 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALR-EKGV-ETKVIVFPNDVH 802 (826)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~PvLii~G~~D~~vp~~~~~~~~~~l~-~~g~-~~~~~~~p~~~H 802 (826)
+ ..+ +....+...++...+.++ ++|+|+++|++|..+|++.+.++++.++ +.|. +++++++++++|
T Consensus 149 --------~-~~~--~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H 217 (238)
T 1ufo_A 149 --------V-VED--PGVLALYQAPPATRGEAYGGVPLLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGH 217 (238)
T ss_dssp --------C-CCC--HHHHHHHHSCGGGCGGGGTTCCEEEEEETTCTTTTHHHHHHHHHHHGGGCTTCCEEEEEETTCCS
T ss_pred --------c-cCC--cccchhhcCChhhhhhhccCCcEEEEECCCCCccCcHHHHHHHHHHhhcCCCCceEEEEeCCCCc
Confidence 0 111 224455566777777888 8999999999999999999999999999 7777 899999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHc
Q 003363 803 GIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 803 ~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
.+. .+..+.+.+||.++|
T Consensus 218 ~~~-----~~~~~~~~~~l~~~l 235 (238)
T 1ufo_A 218 TLT-----PLMARVGLAFLEHWL 235 (238)
T ss_dssp SCC-----HHHHHHHHHHHHHHH
T ss_pred ccH-----HHHHHHHHHHHHHHH
Confidence 875 356778999998876
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=179.81 Aligned_cols=191 Identities=11% Similarity=0.098 Sum_probs=139.8
Q ss_pred EEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhh----------cCCCCCCc
Q 003363 580 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ----------SLPGKVGS 649 (826)
Q Consensus 580 ~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~----------~~~~~~~~ 649 (826)
++.|. ...+.| ||++||.+.. ...|...++.|+ .||.|+++|.++..+.+..|.. ........
T Consensus 8 ~~~~~---~~~~~p-vv~lHG~g~~--~~~~~~~~~~l~-~~~~v~~~~~~~~~~g~~~~~~~~g~g~~~~~~~~~~~~~ 80 (209)
T 3og9_A 8 VFKAG---RKDLAP-LLLLHSTGGD--EHQLVEIAEMIA-PSHPILSIRGRINEQGVNRYFKLRGLGGFTKENFDLESLD 80 (209)
T ss_dssp EEECC---CTTSCC-EEEECCTTCC--TTTTHHHHHHHS-TTCCEEEECCSBCGGGCCBSSCBCSCTTCSGGGBCHHHHH
T ss_pred EEeCC---CCCCCC-EEEEeCCCCC--HHHHHHHHHhcC-CCceEEEecCCcCCCCcccceecccccccccCCCCHHHHH
Confidence 44454 345678 9999996654 446777777776 7999999995532111111110 00000111
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCc
Q 003363 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 729 (826)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (826)
...+++.+.++.+.+...+|+++++|+|||+||.+++.++.++|++++++|+.+|......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~d~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~------------------- 141 (209)
T 3og9_A 81 EETDWLTDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHGMQLEDF------------------- 141 (209)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEETHHHHHHHHHHHTTSCCCSEEEEESCCCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHhcCCCcceEEEEEECHHHHHHHHHHHhCCcccceEEEECCCCCCcc-------------------
Confidence 2345666677777666668889999999999999999999999999999999988543100
Q ss_pred CCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCC
Q 003363 730 GKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQS 809 (826)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~ 809 (826)
.......++|+|++||++|..+|+++++++++.|++.+.++++++++ ++|.+.
T Consensus 142 ----------------------~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~-~gH~~~---- 194 (209)
T 3og9_A 142 ----------------------EQTVQLDDKHVFLSYAPNDMIVPQKNFGDLKGDLEDSGCQLEIYESS-LGHQLT---- 194 (209)
T ss_dssp ----------------------CCCCCCTTCEEEEEECTTCSSSCHHHHHHHHHHHHHTTCEEEEEECS-STTSCC----
T ss_pred ----------------------cccccccCCCEEEEcCCCCCccCHHHHHHHHHHHHHcCCceEEEEcC-CCCcCC----
Confidence 00123457899999999999999999999999999999999999998 799884
Q ss_pred HHHHHHHHHHHHHHH
Q 003363 810 DFESFLNIGLWFKKY 824 (826)
Q Consensus 810 ~~~~~~~i~~w~~~~ 824 (826)
.+....+.+||+++
T Consensus 195 -~~~~~~~~~~l~~~ 208 (209)
T 3og9_A 195 -QEEVLAAKKWLTET 208 (209)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhh
Confidence 35678899999875
|
| >1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-19 Score=184.14 Aligned_cols=195 Identities=13% Similarity=0.091 Sum_probs=143.5
Q ss_pred EEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECC-------------------CCCCCCchhhh
Q 003363 580 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNY-------------------RGSLGFGEEAL 640 (826)
Q Consensus 580 ~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~-------------------rG~~g~G~~~~ 640 (826)
++.|+ ..++.|+||++||++.. ...|...+..|+++||.|+++|+ +|. .....
T Consensus 14 ~~~p~---~~~~~~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~w~d~~g~-~~~~~-- 85 (232)
T 1fj2_A 14 AIVPA---ARKATAAVIFLHGLGDT--GHGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGL-SPDSQ-- 85 (232)
T ss_dssp EEECC---SSCCSEEEEEECCSSSC--HHHHHHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCC-STTCC--
T ss_pred cccCC---CCCCCceEEEEecCCCc--cchHHHHHHHHhcCCcEEEecCCCccccccccccccccccccccC-Ccccc--
Confidence 44565 35678999999997754 44566677777778999999854 442 10000
Q ss_pred hcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCc
Q 003363 641 QSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDW 720 (826)
Q Consensus 641 ~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~ 720 (826)
..........+|+.++++++.+ ..+|.++++|+|||+||.+++.++.++|++++++|+.+|........
T Consensus 86 --~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~-------- 154 (232)
T 1fj2_A 86 --EDESGIKQAAENIKALIDQEVK-NGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASF-------- 154 (232)
T ss_dssp --BCHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGGS--------
T ss_pred --cccHHHHHHHHHHHHHHHHHhc-CCCCcCCEEEEEECHHHHHHHHHHHhCCCceeEEEEeecCCCCCccc--------
Confidence 0000011124566666666665 45788999999999999999999999999999999999876432110
Q ss_pred hhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCC--EEEEEeC
Q 003363 721 CYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVE--TKVIVFP 798 (826)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~--~~~~~~p 798 (826)
. .....+.++++|+|+++|++|..+|++.+.++++.+++.+.+ +++++++
T Consensus 155 ------~----------------------~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 206 (232)
T 1fj2_A 155 ------P----------------------QGPIGGANRDISILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYE 206 (232)
T ss_dssp ------C----------------------SSCCCSTTTTCCEEEEEETTCSSSCHHHHHHHHHHHHHHSCGGGEEEEEET
T ss_pred ------c----------------------ccccccccCCCCEEEEecCCCccCCHHHHHHHHHHHHHhCCCCceEEEEeC
Confidence 0 001234567899999999999999999999999999988855 9999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 799 NDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 799 ~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
+++|.+. .+..+.+.+||+++|+
T Consensus 207 ~~~H~~~-----~~~~~~i~~~l~~~l~ 229 (232)
T 1fj2_A 207 GMMHSSC-----QQEMMDVKQFIDKLLP 229 (232)
T ss_dssp TCCSSCC-----HHHHHHHHHHHHHHSC
T ss_pred CCCcccC-----HHHHHHHHHHHHHhcC
Confidence 9999883 3556899999999874
|
| >1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=213.47 Aligned_cols=246 Identities=13% Similarity=0.095 Sum_probs=169.8
Q ss_pred ccCCCee--EEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-------------------C--------------------
Q 003363 569 TKGAQKP--FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-------------------L-------------------- 607 (826)
Q Consensus 569 ~~~~g~~--l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~-------------------~-------------------- 607 (826)
...||.. +.+.+|.|++ .+++|+||..||...... .
T Consensus 179 ~~~DG~~d~L~a~l~~P~~---~~k~PvIv~~~pYg~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~ 255 (763)
T 1lns_A 179 SEQRGENDLIKIQIIRPKS---TEKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQKLPQKLSAKAKEL 255 (763)
T ss_dssp TTCSSSCCEEEEEEEECCC---SSCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECCCCCCCCCCCCCCCCCC
T ss_pred cCCCCCeeeEEEEEEecCC---CCcccEEEecCCcCCCCcccccccccccccccccccCccccccccccccccccccccc
Confidence 5678888 9999999984 478999998887332100 0
Q ss_pred -------ccc-----hHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcC---------
Q 003363 608 -------SSY-----SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG--------- 666 (826)
Q Consensus 608 -------~~~-----~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~--------- 666 (826)
..| ....++|+++||+|+++|+||+++++.. ...++..+.+|+.++++|+..+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~la~~GYaVv~~D~RG~G~S~G~-----~~~~~~~e~~D~~a~IdwL~~~~~~~~d~~~~ 330 (763)
T 1lns_A 256 PIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGF-----QTSGDYQQIYSMTAVIDWLNGRARAYTSRKKT 330 (763)
T ss_dssp CEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSC-----CCTTSHHHHHHHHHHHHHHTTSSCEESSTTCC
T ss_pred cccccchhccccccccchHHHHHHCCCEEEEECCCcCCCCCCc-----CCCCCHHHHHHHHHHHHHHhhccccccccccc
Confidence 011 1345889999999999999997665433 22334457899999999998431
Q ss_pred -----CCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCC-------CCCCchhh----hhccCcC
Q 003363 667 -----LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT-------DIPDWCYV----ESYGSKG 730 (826)
Q Consensus 667 -----~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~-------~~~~~~~~----~~~~~~~ 730 (826)
..+.+||+++|+||||++++.+|+.+|+.++++|+.+|+.++...+... ..+.+... ..+....
T Consensus 331 ~~v~q~~~~grVgl~G~SyGG~ial~~Aa~~p~~lkaiV~~~~~~d~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~~~~~ 410 (763)
T 1lns_A 331 HEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNL 410 (763)
T ss_dssp CEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCCHHHHHHHHCGGGG
T ss_pred ccccccCCCCcEEEEEECHHHHHHHHHHHhCCcccEEEEEecccccHHHHhhhcchhhhcccCCchhhhHHhHHHHhhhc
Confidence 1345799999999999999999999999999999999988765432111 01111000 0000000
Q ss_pred ---------------Ccc-----CCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCC
Q 003363 731 ---------------KDS-----FTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV 790 (826)
Q Consensus 731 ---------------~~~-----~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~ 790 (826)
... ....+. ....+...++...+++|++|+|++||..|..||+.++.++++++++ +.
T Consensus 411 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~w~~~s~~~~l~~I~~PvLii~G~~D~~vp~~~a~~l~~al~~-~~ 487 (763)
T 1lns_A 411 DGADFLKGNAEYEKRLAEMTAALDRKSGD--YNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALPE-GH 487 (763)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHCTTTCC--CCHHHHTTBGGGGGGGCCSEEEEEEETTCCSSCTHHHHHHHHHSCT-TC
T ss_pred CcchhhhHHHHHHHHHHHHHhhhhhccCc--hhHHhhccChhhHhhcCCCCEEEEEECCCCCCChHHHHHHHHhhcc-CC
Confidence 000 000000 0123345677888999999999999999999999999999999987 66
Q ss_pred CEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 791 ETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 791 ~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
+.++++ ++++|.........++.+.+.+||++|||
T Consensus 488 ~~~l~i-~~~gH~~~~~~~~~~~~~~i~~Ffd~~Lk 522 (763)
T 1lns_A 488 AKHAFL-HRGAHIYMNSWQSIDFSETINAYFVAKLL 522 (763)
T ss_dssp CEEEEE-ESCSSCCCTTBSSCCHHHHHHHHHHHHHT
T ss_pred CeEEEE-eCCcccCccccchHHHHHHHHHHHHHHhc
Confidence 776655 56789864332223568899999999986
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A | Back alignment and structure |
|---|
Probab=99.82 E-value=7.3e-20 Score=187.10 Aligned_cols=219 Identities=17% Similarity=0.138 Sum_probs=151.2
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCc-hhhhhcCCCCCCcchHHHHHHHHHHHHHcCCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFG-EEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G-~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (826)
++.|+||++||.+.. ...|...+..|+++||.|+++|+||.+... ...... . ......+|+.++++++.+.
T Consensus 20 ~~~~~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~--~-~~~~~~~d~~~~i~~l~~~--- 91 (251)
T 3dkr_A 20 GTDTGVVLLHAYTGS--PNDMNFMARALQRSGYGVYVPLFSGHGTVEPLDILTK--G-NPDIWWAESSAAVAHMTAK--- 91 (251)
T ss_dssp CSSEEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEECCCTTCSSSCTHHHHHH--C-CHHHHHHHHHHHHHHHHTT---
T ss_pred CCCceEEEeCCCCCC--HHHHHHHHHHHHHCCCEEEecCCCCCCCCChhhhcCc--c-cHHHHHHHHHHHHHHHHHh---
Confidence 356889999997655 457888899999999999999999965442 111110 0 1112257888888888766
Q ss_pred CCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhh------
Q 003363 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED------ 742 (826)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 742 (826)
.++++|+|||+||.+++.++.++|++++++++.+|............ ..+...+. ......+....
T Consensus 92 -~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~i~~~p~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~ 163 (251)
T 3dkr_A 92 -YAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGF---LKYAEYMN----RLAGKSDESTQILAYLP 163 (251)
T ss_dssp -CSEEEEEESHHHHHHHHHHHHHCSSCCEEEESSCCCCTTCBCHHHHH---HHHHHHHH----HHHTCCCCHHHHHHHHH
T ss_pred -cCCeEEEEechHHHHHHHHHHhCccceeeEEEecchhhccchhhHHH---HHHHHHHH----hhcccCcchhhHHhhhH
Confidence 57999999999999999999999999999999998765321000000 00000000 00000000000
Q ss_pred --HHHHh--hcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 003363 743 --LTRFH--SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIG 818 (826)
Q Consensus 743 --~~~~~--~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~ 818 (826)
...+. .......+.++++|+|+++|++|..+|++.+..+++.+... .+++++++++++|.+.......++.+.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gH~~~~~~~~~~~~~~i~ 242 (251)
T 3dkr_A 164 GQLAAIDQFATTVAADLNLVKQPTFIGQAGQDELVDGRLAYQLRDALINA-ARVDFHWYDDAKHVITVNSAHHALEEDVI 242 (251)
T ss_dssp HHHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSBCTTHHHHHHHHCTTC-SCEEEEEETTCCSCTTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCCEEEEecCCCcccChHHHHHHHHHhcCC-CCceEEEeCCCCcccccccchhHHHHHHH
Confidence 00010 01123456788999999999999999999999999988764 56899999999999877766778999999
Q ss_pred HHHHHHc
Q 003363 819 LWFKKYC 825 (826)
Q Consensus 819 ~w~~~~l 825 (826)
+||++..
T Consensus 243 ~fl~~~~ 249 (251)
T 3dkr_A 243 AFMQQEN 249 (251)
T ss_dssp HHHHTTC
T ss_pred HHHHhhc
Confidence 9998753
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-19 Score=213.81 Aligned_cols=311 Identities=12% Similarity=0.092 Sum_probs=187.7
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCC----
Q 003363 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN---- 176 (826)
Q Consensus 101 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~---- 176 (826)
.+.+||||+ +++.. ....++++++. +++.++++...-. ....+..++|||||++|||.+..++
T Consensus 20 ~~~~s~dg~-~~~~~---------~d~~i~~~~~~--~g~~~~~~~~~~~-~~~~~~~~~~SpDg~~la~~~~~~~~~~~ 86 (719)
T 1z68_A 20 FPNWISGQE-YLHQS---------ADNNIVLYNIE--TGQSYTILSNRTM-KSVNASNYGLSPDRQFVYLESDYSKLWRY 86 (719)
T ss_dssp CCEESSSSE-EEEEC---------TTSCEEEEESS--SCCEEEEECHHHH-HTTTCSEEEECTTSSEEEEEEEEEECSSS
T ss_pred ccEECCCCe-EEEEc---------CCCCEEEEEcC--CCcEEEEEccccc-cccceeeEEECCCCCeEEEEecCceeEEe
Confidence 456689995 44432 12367887763 3344555433200 0013778999999999999876321
Q ss_pred -CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCC
Q 003363 177 -ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWK 254 (826)
Q Consensus 177 -~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (826)
...+++..+ .+++......+.... ..++|||||++|||++
T Consensus 87 s~~~~i~~~d~~~g~~~~~~~l~~~~----------~~~~~SPDG~~la~~~---------------------------- 128 (719)
T 1z68_A 87 SYTATYYIYDLSNGEFVRGNELPRPI----------QYLCWSPVGSKLAYVY---------------------------- 128 (719)
T ss_dssp CEEEEEEEEETTTTEECCSSCCCSSB----------CCEEECSSTTCEEEEE----------------------------
T ss_pred ecceEEEEEECCCCccccceecCccc----------ccceECCCCCEEEEEE----------------------------
Confidence 122454444 344431001122222 7899999999999973
Q ss_pred CcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCC------------------ccceEEEeeCCCCCccEEEEE
Q 003363 255 GQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL------------------SVGQVVWAPLNEGLHQYLVFV 316 (826)
Q Consensus 255 ~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~------------------~~~~~~wSPDg~~~~~~lvf~ 316 (826)
...|++||+.+|+.++++ ..+.. ....++|||||+. |+|.
T Consensus 129 -----------------~~~i~~~~~~~g~~~~l~-~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~----la~~ 186 (719)
T 1z68_A 129 -----------------QNNIYLKQRPGDPPFQIT-FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKF----LAYA 186 (719)
T ss_dssp -----------------TTEEEEESSTTSCCEECC-CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSE----EEEE
T ss_pred -----------------CCeEEEEeCCCCCcEEEe-cCCCcCCeEcccccceeeeecccCcccEEECCCCCE----EEEE
Confidence 147999999999888873 11111 1147999999999 9998
Q ss_pred eecCcc-eee--------------eeeee----ccCCCceEEEEcccccchhhhhhhhcCCCCCCcce---ec------C
Q 003363 317 GWSSET-RKL--------------GIKYC----YNRPCALYAVRVSLYKSEASELELKESSSEDLPVV---NL------T 368 (826)
Q Consensus 317 ~~~~~~-~~~--------------g~~~~----~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~L------t 368 (826)
+.+... +.. .+.|. .+....|+++|+ ++++.. ++ .
T Consensus 187 ~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~-----------------~~~~~~~~~~~~~~~~~~ 249 (719)
T 1z68_A 187 EFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDT-----------------TYPAYVGPQEVPVPAMIA 249 (719)
T ss_dssp EEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEES-----------------SCHHHHCCEECCCCHHHH
T ss_pred EECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEEC-----------------CCCCccceeEccCCccCC
Confidence 754321 100 00000 012237889998 555431 33 3
Q ss_pred CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEe----CCCCCCCCcccceeeeeeeeeccCCCCCcccccC
Q 003363 369 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID----WPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS 444 (826)
Q Consensus 369 ~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d----~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~ 444 (826)
.+......+.|||||+ +++...... ....+|+++| +.+++.+.+..... ...+. +..
T Consensus 250 ~~~~~~~~~~~SpD~~-~~~~~~~~~------~~~~~l~~~d~~~~~~~g~~~~~~~~~~-------~~~~~-----~~~ 310 (719)
T 1z68_A 250 SSDYYFSWLTWVTDER-VCLQWLKRV------QNVSVLSICDFREDWQTWDCPKTQEHIE-------ESRTG-----WAG 310 (719)
T ss_dssp TSCEEEEEEEESSSSE-EEEEEEESS------TTEEEEEEEEECSSSSSEECCGGGEEEE-------ECSSS-----CSS
T ss_pred CCcceEEEeEEeCCCe-EEEEEeccc------cCeEEEEEEcccCCCCCCceEEEEeccc-------ccCCc-----eEc
Confidence 3555678899999976 555543321 2346899999 77765544431000 00000 000
Q ss_pred --CCCCCccccCCCEEEEEEE-eCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeC---CCCCCeEEEE
Q 003363 445 --SILSNPWLSDGCTMLLSSI-WGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS---PVDVPQVKYG 518 (826)
Q Consensus 445 --~~~~~~ws~Dg~~l~~~~~-~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~---~~~p~~l~~~ 518 (826)
....+.|+|||+.|++.+. ..+..+||.+|+.+++.++|+.....+....++ +++.+++.... ...-..||..
T Consensus 311 ~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~ 389 (719)
T 1z68_A 311 GFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRI 389 (719)
T ss_dssp SSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEE
T ss_pred cccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEE
Confidence 0126789999998887544 567789999999999999998766655555666 89999888865 1233567777
Q ss_pred eec
Q 003363 519 YFV 521 (826)
Q Consensus 519 ~~~ 521 (826)
++.
T Consensus 390 ~~~ 392 (719)
T 1z68_A 390 SIG 392 (719)
T ss_dssp ECS
T ss_pred eCC
Confidence 763
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=7.2e-20 Score=189.44 Aligned_cols=193 Identities=15% Similarity=0.157 Sum_probs=147.4
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCC-CCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcch
Q 003363 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHS-VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~-~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~ 651 (826)
+..+...+|.|.+ ++.|+||++|||++. .....|...+..|+++||.|+++|+||++.+. ....
T Consensus 48 ~~~~~~~~~~p~~----~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~~~~~~~-----------~~~~ 112 (262)
T 2pbl_A 48 GDRHKFDLFLPEG----TPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEVR-----------ISEI 112 (262)
T ss_dssp STTCEEEEECCSS----SCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTSC-----------HHHH
T ss_pred CCCceEEEEccCC----CCCCEEEEEcCcccccCChHHHHHHHHHHHhCCCEEEEeCCCCCCCCC-----------hHHH
Confidence 3345556777863 678999999997632 33456777788999999999999999964321 1234
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhC------CCceeEEEecCCccchhhhccCCCCCCchhhhh
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 725 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~------p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~ 725 (826)
.+|+.++++++..+.. ++++|+|||+||.+++.++.++ |++++++|+.+|+.++....... ....
T Consensus 113 ~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~v~~~vl~~~~~~~~~~~~~~------~~~~ 183 (262)
T 2pbl_A 113 TQQISQAVTAAAKEID---GPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRTS------MNEK 183 (262)
T ss_dssp HHHHHHHHHHHHHHSC---SCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGGST------THHH
T ss_pred HHHHHHHHHHHHHhcc---CCEEEEEECHHHHHHHHHhccccccccccccceEEEEecCccCchHHHhhh------hhhh
Confidence 7899999999988753 7899999999999999999887 88999999999987754332110 0000
Q ss_pred ccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCC
Q 003363 726 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 805 (826)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 805 (826)
+. .....+...+|...+.++++|+|+++|++|..++++++..+++.++ ++++++++++|...
T Consensus 184 ~~-------------~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~H~~~ 245 (262)
T 2pbl_A 184 FK-------------MDADAAIAESPVEMQNRYDAKVTVWVGGAERPAFLDQAIWLVEAWD-----ADHVIAFEKHHFNV 245 (262)
T ss_dssp HC-------------CCHHHHHHTCGGGCCCCCSCEEEEEEETTSCHHHHHHHHHHHHHHT-----CEEEEETTCCTTTT
T ss_pred hC-------------CCHHHHHhcCcccccCCCCCCEEEEEeCCCCcccHHHHHHHHHHhC-----CeEEEeCCCCcchH
Confidence 00 1123445667877888899999999999999999999999999986 78999999999876
Q ss_pred CC
Q 003363 806 RP 807 (826)
Q Consensus 806 ~~ 807 (826)
..
T Consensus 246 ~~ 247 (262)
T 2pbl_A 246 IE 247 (262)
T ss_dssp TG
T ss_pred Hh
Confidence 43
|
| >3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.6e-19 Score=175.77 Aligned_cols=194 Identities=16% Similarity=0.185 Sum_probs=148.9
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH--HHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCC
Q 003363 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK--SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~--~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~ 647 (826)
+.+|..+++++|.|.+ +.|+||++||++.. ...|.. .+..|+++||.|+++|+||.+. ++... ...
T Consensus 10 ~~~g~~l~~~~~~~~~-----~~~~vv~~hG~~~~--~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~---s~~~~--~~~ 77 (207)
T 3bdi_A 10 DVNGTRVFQRKMVTDS-----NRRSIALFHGYSFT--SMDWDKADLFNNYSKIGYNVYAPDYPGFGR---SASSE--KYG 77 (207)
T ss_dssp EETTEEEEEEEECCTT-----CCEEEEEECCTTCC--GGGGGGGTHHHHHHTTTEEEEEECCTTSTT---SCCCT--TTC
T ss_pred eeCCcEEEEEEEeccC-----CCCeEEEECCCCCC--ccccchHHHHHHHHhCCCeEEEEcCCcccc---cCccc--CCC
Confidence 3467889999998863 56899999997755 456777 8899999999999999999443 31100 011
Q ss_pred Ccc-hHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhc
Q 003363 648 GSQ-DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 726 (826)
Q Consensus 648 ~~~-~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 726 (826)
... ..+++.+.+..+++. ++.++++++|||+||.+++.++.++|++++++++.+|..... +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~--~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~----------~------ 139 (207)
T 3bdi_A 78 IDRGDLKHAAEFIRDYLKA--NGVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAPAWVES----------L------ 139 (207)
T ss_dssp CTTCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCGG----------G------
T ss_pred CCcchHHHHHHHHHHHHHH--cCCCceEEEEECccHHHHHHHHHhCchhheEEEEeCCccccc----------h------
Confidence 222 577888888877776 455799999999999999999999999999999998852100 0
Q ss_pred cCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCC
Q 003363 727 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 806 (826)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~ 806 (826)
...+.++++|+|+++|++|..++++....+.+.+. +++++++++++|.+..
T Consensus 140 -------------------------~~~~~~~~~p~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~~H~~~~ 190 (207)
T 3bdi_A 140 -------------------------KGDMKKIRQKTLLVWGSKDHVVPIALSKEYASIIS----GSRLEIVEGSGHPVYI 190 (207)
T ss_dssp -------------------------HHHHTTCCSCEEEEEETTCTTTTHHHHHHHHHHST----TCEEEEETTCCSCHHH
T ss_pred -------------------------hHHHhhccCCEEEEEECCCCccchHHHHHHHHhcC----CceEEEeCCCCCCccc
Confidence 12345678999999999999999999988888774 4789999999998653
Q ss_pred CCCHHHHHHHHHHHHHH
Q 003363 807 PQSDFESFLNIGLWFKK 823 (826)
Q Consensus 807 ~~~~~~~~~~i~~w~~~ 823 (826)
.. ..++.+.+.+||++
T Consensus 191 ~~-~~~~~~~i~~fl~~ 206 (207)
T 3bdi_A 191 EK-PEEFVRITVDFLRN 206 (207)
T ss_dssp HS-HHHHHHHHHHHHHT
T ss_pred cC-HHHHHHHHHHHHhh
Confidence 33 44677888888864
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-18 Score=178.59 Aligned_cols=263 Identities=14% Similarity=0.141 Sum_probs=180.4
Q ss_pred cceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cC-CceeEEEecCCCcc
Q 003363 124 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ-SQLEKEFHVPQTVH 201 (826)
Q Consensus 124 ~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~-~~~~~~~~~~~~~~ 201 (826)
.....|+++++. +++.+.+.... ..+..++|||||++|++..+. .++.++ .+ ++..++.... ..
T Consensus 19 ~~~~~i~~~d~~--~~~~~~~~~~~-----~~v~~~~~spdg~~l~~~~~~-----~i~~~d~~~~~~~~~~~~~~--~~ 84 (297)
T 2ojh_A 19 SMRSSIEIFNIR--TRKMRVVWQTP-----ELFEAPNWSPDGKYLLLNSEG-----LLYRLSLAGDPSPEKVDTGF--AT 84 (297)
T ss_dssp CCCEEEEEEETT--TTEEEEEEEES-----SCCEEEEECTTSSEEEEEETT-----EEEEEESSSCCSCEECCCTT--CC
T ss_pred CcceeEEEEeCC--CCceeeeccCC-----cceEeeEECCCCCEEEEEcCC-----eEEEEeCCCCCCceEecccc--cc
Confidence 355677777653 33344444333 458899999999999997532 355444 34 4444443221 11
Q ss_pred ccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEcc
Q 003363 202 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 281 (826)
Q Consensus 202 g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 281 (826)
+. +..+.|||||++|++...... ....||++++.
T Consensus 85 ~~------~~~~~~spdg~~l~~~~~~~~----------------------------------------~~~~l~~~~~~ 118 (297)
T 2ojh_A 85 IC------NNDHGISPDGALYAISDKVEF----------------------------------------GKSAIYLLPST 118 (297)
T ss_dssp CB------CSCCEECTTSSEEEEEECTTT----------------------------------------SSCEEEEEETT
T ss_pred cc------ccceEECCCCCEEEEEEeCCC----------------------------------------CcceEEEEECC
Confidence 12 268999999999999864321 24789999999
Q ss_pred CCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCC
Q 003363 282 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 361 (826)
Q Consensus 282 ~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 361 (826)
+++.+.+. ... ....++|+|||+. |+|++... ....||.+++ .+
T Consensus 119 ~~~~~~~~--~~~-~~~~~~~spdg~~----l~~~~~~~------------~~~~l~~~~~-----------------~~ 162 (297)
T 2ojh_A 119 GGTPRLMT--KNL-PSYWHGWSPDGKS----FTYCGIRD------------QVFDIYSMDI-----------------DS 162 (297)
T ss_dssp CCCCEECC--SSS-SEEEEEECTTSSE----EEEEEEET------------TEEEEEEEET-----------------TT
T ss_pred CCceEEee--cCC-CccceEECCCCCE----EEEEECCC------------CceEEEEEEC-----------------CC
Confidence 98888773 222 3667899999998 99877322 2236888887 67
Q ss_pred CcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCccc
Q 003363 362 LPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGL 441 (826)
Q Consensus 362 ~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~ 441 (826)
++.+.++........+.|||||++|++.+..+ +...||.++..++....+.....
T Consensus 163 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~----------------- 217 (297)
T 2ojh_A 163 GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRT--------GQMQIWRVRVDGSSVERITDSAY----------------- 217 (297)
T ss_dssp CCEEECCCSSSCEEEEEECTTSSEEEEEECTT--------SSCEEEEEETTSSCEEECCCCSE-----------------
T ss_pred CcceEcccCCCccccceECCCCCEEEEEecCC--------CCccEEEECCCCCCcEEEecCCc-----------------
Confidence 77788887777788999999999999887643 34678888876644433322111
Q ss_pred ccCCCCCCccccCCCEEEEEEEeC--------CeEEEEEEECCCCcEEEecC---CCCCeeeEEEeecCCEEEEEEeCCC
Q 003363 442 YSSSILSNPWLSDGCTMLLSSIWG--------SSQVIISVNVSSGELLRITP---AESNFSWSLLTLDGDNIIAVSSSPV 510 (826)
Q Consensus 442 ~~~~~~~~~ws~Dg~~l~~~~~~~--------~~~~l~~vdl~tg~~~~lt~---~~~~~~~~~~s~dg~~l~~~~s~~~ 510 (826)
....+.|+|||+.|++.+... ....|+.+|+.+++.+.+.. ....+....|+++++.|++......
T Consensus 218 ---~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 294 (297)
T 2ojh_A 218 ---GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFPV 294 (297)
T ss_dssp ---EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECCC
T ss_pred ---ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEeccC
Confidence 123568999999998887654 34789999999998776653 2334455678999999988876643
|
| >1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-19 Score=178.14 Aligned_cols=197 Identities=15% Similarity=0.152 Sum_probs=142.0
Q ss_pred EEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHH--CCcEEEEECCCCC-----CCCc-hhhhhc---C-CCCC
Q 003363 580 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS--VGYSLLIVNYRGS-----LGFG-EEALQS---L-PGKV 647 (826)
Q Consensus 580 ~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~--~G~~Vl~~d~rG~-----~g~G-~~~~~~---~-~~~~ 647 (826)
++.|+ ..++.|+||++||++.. ...|...+..|++ +||.|+++|++|. .+++ ..|.+. . ....
T Consensus 5 ~~~~~---~~~~~~~vv~~HG~~~~--~~~~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~~~ 79 (218)
T 1auo_A 5 LILQP---AKPADACVIWLHGLGAD--RYDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSI 79 (218)
T ss_dssp EEECC---SSCCSEEEEEECCTTCC--TTTTHHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEE
T ss_pred eecCC---CCCCCcEEEEEecCCCC--hhhHHHHHHHHhhcCCceEEEeCCCCCccccCCCCCcccceecCcCCCccccc
Confidence 34454 35678999999997755 4467788889988 9999999997741 1100 000000 0 0001
Q ss_pred Ccch----HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHH-hCCCceeEEEecCCccchhhhccCCCCCCchh
Q 003363 648 GSQD----VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG-QAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 722 (826)
Q Consensus 648 ~~~~----~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~-~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~ 722 (826)
.... .+++.++++++.+ ..++.++++++|||+||.+++.++. ++|++++++|+.+|..... ..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~------~~----- 147 (218)
T 1auo_A 80 SLEELEVSAKMVTDLIEAQKR-TGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTF------GD----- 147 (218)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTC------CT-----
T ss_pred chHHHHHHHHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCCCCccEEEEECCCCCCc------hh-----
Confidence 1112 3445555555544 3478889999999999999999999 9999999999999976430 00
Q ss_pred hhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCC
Q 003363 723 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH 802 (826)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H 802 (826)
.. . ....++++|+|+++|++|..+|++.++++++.+++.|.++++++++ ++|
T Consensus 148 ----~~--------~---------------~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~gH 199 (218)
T 1auo_A 148 ----EL--------E---------------LSASQQRIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEYP-MGH 199 (218)
T ss_dssp ----TC--------C---------------CCHHHHTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEES-CSS
T ss_pred ----hh--------h---------------hhhcccCCCEEEEEeCCCceecHHHHHHHHHHHHhCCCceEEEEec-CCC
Confidence 00 0 0013457899999999999999999999999999988899999999 999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 803 GIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 803 ~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
.+. .+..+.+.+||.++|+
T Consensus 200 ~~~-----~~~~~~~~~~l~~~l~ 218 (218)
T 1auo_A 200 EVL-----PQEIHDIGAWLAARLG 218 (218)
T ss_dssp SCC-----HHHHHHHHHHHHHHHC
T ss_pred ccC-----HHHHHHHHHHHHHHhC
Confidence 874 3567899999999875
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-18 Score=183.81 Aligned_cols=239 Identities=13% Similarity=0.228 Sum_probs=150.2
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcch
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~ 651 (826)
+|..+...++.+.. ..+..|+||++||++.. ...|...+..|+++||.|+++|+||.+..... ......
T Consensus 28 ~~~~~~~~~~~~~~--~~~~~p~vv~~hG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~-------~~~~~~ 96 (315)
T 4f0j_A 28 QGQPLSMAYLDVAP--KKANGRTILLMHGKNFC--AGTWERTIDVLADAGYRVIAVDQVGFCKSSKP-------AHYQYS 96 (315)
T ss_dssp TTEEEEEEEEEECC--SSCCSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC-------SSCCCC
T ss_pred CCCCeeEEEeecCC--CCCCCCeEEEEcCCCCc--chHHHHHHHHHHHCCCeEEEeecCCCCCCCCC-------CccccC
Confidence 34445544444432 34667999999997755 45788899999999999999999995443211 112345
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCC---Cchh------
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIP---DWCY------ 722 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~---~~~~------ 722 (826)
.+++.+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.+|.............. .+..
T Consensus 97 ~~~~~~~~~~~~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (315)
T 4f0j_A 97 FQQLAANTHALLER--LGVARASVIGHSMGGMLATRYALLYPRQVERLVLVNPIGLEDWKALGVPWRSVDDWYRRDLQTS 174 (315)
T ss_dssp HHHHHHHHHHHHHH--TTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCSSCHHHHTCCCCCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHH--hCCCceEEEEecHHHHHHHHHHHhCcHhhheeEEecCcccCCcccccchhhhhHHHHhhcccCC
Confidence 77888888877776 455799999999999999999999999999999999864211100000000 0000
Q ss_pred ---hhh-----ccCcC-C----------ccCCCCCChh--------hHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCc
Q 003363 723 ---VES-----YGSKG-K----------DSFTESPSVE--------DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPV 775 (826)
Q Consensus 723 ---~~~-----~~~~~-~----------~~~~~~~~~~--------~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~ 775 (826)
... +.... . .......... ........+....+.++++|+|+++|++|..+|.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~lii~G~~D~~~p~ 254 (315)
T 4f0j_A 175 AEGIRQYQQATYYAGEWRPEFDRWVQMQAGMYRGKGRESVAWNSALTYDMIFTQPVVYELDRLQMPTLLLIGEKDNTAIG 254 (315)
T ss_dssp HHHHHHHHHHHTSTTCCCGGGHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHCCCGGGGGGCCSCEEEEEETTCCCCTT
T ss_pred hHHHHHHHHHHHhccccCCchHHHHHHHHHHhhccCcchhhHHHHHhcCccccchhhhhcccCCCCeEEEEecCCCcCcc
Confidence 000 00000 0 0000000000 0111122334456788999999999999999994
Q ss_pred HHH------------HHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 776 SNG------------LQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 776 ~~~------------~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
.+. .+..+.+.+....+++++++++||.+... ...++.+.|.+||+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~-~p~~~~~~i~~fl~~~ 314 (315)
T 4f0j_A 255 KDAAPAELKARLGNYAQLGKDAARRIPQATLVEFPDLGHTPQIQ-APERFHQALLEGLQTQ 314 (315)
T ss_dssp GGGSCHHHHTTSCCHHHHHHHHHHHSTTEEEEEETTCCSCHHHH-SHHHHHHHHHHHHCC-
T ss_pred ccccccccccccccchhhhhHHHhhcCCceEEEeCCCCcchhhh-CHHHHHHHHHHHhccC
Confidence 332 33334444444568999999999986543 3457888899998753
|
| >3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=176.01 Aligned_cols=184 Identities=20% Similarity=0.245 Sum_probs=139.4
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHH--CCcEEEEECCCCCC----------------CCchhhhhcCCCCCCc
Q 003363 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS--VGYSLLIVNYRGSL----------------GFGEEALQSLPGKVGS 649 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~--~G~~Vl~~d~rG~~----------------g~G~~~~~~~~~~~~~ 649 (826)
+.++.|+||++||++.. ...|...+..|++ +||.|+++|++|.+ ++|.+ .....
T Consensus 20 ~~~~~~~vv~lHG~~~~--~~~~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~------~~~~~ 91 (226)
T 3cn9_A 20 APNADACIIWLHGLGAD--RTDFKPVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFSPA------RAIDE 91 (226)
T ss_dssp CTTCCEEEEEECCTTCC--GGGGHHHHHHHHHHCTTEEEEECCCCEEECGGGTSCEEECSSCBCCSSST------TCBCH
T ss_pred CCCCCCEEEEEecCCCC--hHHHHHHHHHHhhcCCCcEEEeecCCCCccccCCCCcccccccccccccc------ccccc
Confidence 56778999999997754 4567788888988 99999999988521 12211 01112
Q ss_pred chHHH----HHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHH-hCCCceeEEEecCCccchhhhccCCCCCCchhhh
Q 003363 650 QDVND----VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG-QAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 724 (826)
Q Consensus 650 ~~~~D----~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~-~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~ 724 (826)
..+.+ +..+++.+.+ ..++.++|+|+|||+||.+++.++. ++|++++++|+.+|..+.....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~~~~------------ 158 (226)
T 3cn9_A 92 DQLNASADQVIALIDEQRA-KGIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALSTYAPTFDDL------------ 158 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHHTCSSCCSEEEEESCCCGGGGGC------------
T ss_pred hhHHHHHHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCccCcceEEEecCcCCCchhh------------
Confidence 22334 4444444433 2477889999999999999999999 9999999999999876432110
Q ss_pred hccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCC
Q 003363 725 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804 (826)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 804 (826)
.. ...++++|+|+++|++|..+|++.+.++++.+++.|.++++++++ ++|.+
T Consensus 159 -----------------------~~----~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~gH~~ 210 (226)
T 3cn9_A 159 -----------------------AL----DERHKRIPVLHLHGSQDDVVDPALGRAAHDALQAQGVEVGWHDYP-MGHEV 210 (226)
T ss_dssp -----------------------CC----CTGGGGCCEEEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEES-CCSSC
T ss_pred -----------------------hh----cccccCCCEEEEecCCCCccCHHHHHHHHHHHHHcCCceeEEEec-CCCCc
Confidence 00 013467899999999999999999999999999988899999999 99987
Q ss_pred CCCCCHHHHHHHHHHHHHHHc
Q 003363 805 ERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 805 ~~~~~~~~~~~~i~~w~~~~l 825 (826)
. .+..+.+.+||+++|
T Consensus 211 ~-----~~~~~~i~~~l~~~l 226 (226)
T 3cn9_A 211 S-----LEEIHDIGAWLRKRL 226 (226)
T ss_dssp C-----HHHHHHHHHHHHHHC
T ss_pred c-----hhhHHHHHHHHHhhC
Confidence 4 356788999999875
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} PDB: 3rli_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.3e-19 Score=182.90 Aligned_cols=219 Identities=17% Similarity=0.213 Sum_probs=151.0
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
+.|+||++||.+.. ...|...+..|+++||.|+++|+||.+....... . ......++|+.++++++.+. .
T Consensus 39 ~~~~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~---~-~~~~~~~~d~~~~i~~l~~~----~ 108 (270)
T 3rm3_A 39 GPVGVLLVHGFTGT--PHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDME---R-TTFHDWVASVEEGYGWLKQR----C 108 (270)
T ss_dssp SSEEEEEECCTTCC--GGGTHHHHHHHHHTTCEEEECCCTTCSSCHHHHH---T-CCHHHHHHHHHHHHHHHHTT----C
T ss_pred CCeEEEEECCCCCC--hhHHHHHHHHHHHCCCEEEEeCCCCCCCCccccc---c-CCHHHHHHHHHHHHHHHHhh----C
Confidence 45999999997655 4568888999999999999999999554432211 1 11122367888888887765 5
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCC----CCCCchhhhhccCcCC------ccCCCCCCh
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT----DIPDWCYVESYGSKGK------DSFTESPSV 740 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~~~ 740 (826)
++++|+|||+||.+++.++.++|+ ++++|+.+|........... ....+. ..+..... ..+...+ .
T Consensus 109 ~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~ 184 (270)
T 3rm3_A 109 QTIFVTGLSMGGTLTLYLAEHHPD-ICGIVPINAAVDIPAIAAGMTGGGELPRYL--DSIGSDLKNPDVKELAYEKTP-T 184 (270)
T ss_dssp SEEEEEEETHHHHHHHHHHHHCTT-CCEEEEESCCSCCHHHHHHSCC---CCSEE--ECCCCCCSCTTCCCCCCSEEE-H
T ss_pred CcEEEEEEcHhHHHHHHHHHhCCC-ccEEEEEcceecccccccchhcchhHHHHH--HHhCccccccchHhhcccccC-h
Confidence 789999999999999999999999 99999999977653322110 011110 00000000 0000000 1
Q ss_pred hhHHHHh--hcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 003363 741 EDLTRFH--SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIG 818 (826)
Q Consensus 741 ~~~~~~~--~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~ 818 (826)
.....+. .......+.++++|+|+++|++|..+|+..+..+++.++. .+++++++|+++|.+.......++.+.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~~~~~~~~~i~ 262 (270)
T 3rm3_A 185 ASLLQLARLMAQTKAKLDRIVCPALIFVSDEDHVVPPGNADIIFQGISS--TEKEIVRLRNSYHVATLDYDQPMIIERSL 262 (270)
T ss_dssp HHHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHSCC--SSEEEEEESSCCSCGGGSTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhhhcCCCEEEEECCCCcccCHHHHHHHHHhcCC--CcceEEEeCCCCcccccCccHHHHHHHHH
Confidence 1111111 0112245677899999999999999999999999888864 35799999999999876666568999999
Q ss_pred HHHHHHc
Q 003363 819 LWFKKYC 825 (826)
Q Consensus 819 ~w~~~~l 825 (826)
+||+++.
T Consensus 263 ~fl~~~~ 269 (270)
T 3rm3_A 263 EFFAKHA 269 (270)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9999875
|
| >3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=186.26 Aligned_cols=220 Identities=15% Similarity=0.221 Sum_probs=152.0
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CCccchHHHHHHH-HCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHH
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~-~~~~~~~~~~~la-~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~ 653 (826)
+.++++.|.+ ++.|+||++|||++.. ....|...+..|+ +.||.|+++||||+++.. ....++
T Consensus 84 ~~~~~~~p~~----~~~p~vv~lHGgg~~~~~~~~~~~~~~~la~~~g~~vi~~D~r~~~~~~-----------~~~~~~ 148 (326)
T 3d7r_A 84 MQVFRFNFRH----QIDKKILYIHGGFNALQPSPFHWRLLDKITLSTLYEVVLPIYPKTPEFH-----------IDDTFQ 148 (326)
T ss_dssp EEEEEEESTT----CCSSEEEEECCSTTTSCCCHHHHHHHHHHHHHHCSEEEEECCCCTTTSC-----------HHHHHH
T ss_pred EEEEEEeeCC----CCCeEEEEECCCcccCCCCHHHHHHHHHHHHHhCCEEEEEeCCCCCCCC-----------chHHHH
Confidence 5567788863 5679999999987543 2345566677776 569999999999965421 123478
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCc----eeEEEecCCccchhhhccCCCCCCchhhhhccCc
Q 003363 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 729 (826)
Q Consensus 654 D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~----~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (826)
|+.+++++++++ ++.++|+|+|||+||.+++.++.++|+. ++++|+.+|+.+....... ... ..... ..
T Consensus 149 d~~~~~~~l~~~--~~~~~i~l~G~S~GG~lAl~~a~~~~~~~~~~v~~lvl~~p~~~~~~~~~~--~~~-~~~~~-~~- 221 (326)
T 3d7r_A 149 AIQRVYDQLVSE--VGHQNVVVMGDGSGGALALSFVQSLLDNQQPLPNKLYLISPILDATLSNKD--ISD-ALIEQ-DA- 221 (326)
T ss_dssp HHHHHHHHHHHH--HCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTT--CCH-HHHHH-CS-
T ss_pred HHHHHHHHHHhc--cCCCcEEEEEECHHHHHHHHHHHHHHhcCCCCCCeEEEECcccccCcCChh--HHh-hhccc-Cc-
Confidence 999999999988 6789999999999999999999887766 9999999998765321100 000 00000 00
Q ss_pred CCccCCCCCChhh----HHHHh--------hcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEe
Q 003363 730 GKDSFTESPSVED----LTRFH--------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 797 (826)
Q Consensus 730 ~~~~~~~~~~~~~----~~~~~--------~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 797 (826)
. ..... ...+. ..+|+...-...+|+|+++|++|. +..++..+.+++++.+.+++++++
T Consensus 222 ----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~--~~~~~~~~~~~l~~~~~~~~~~~~ 292 (326)
T 3d7r_A 222 ----V---LSQFGVNEIMKKWANGLPLTDKRISPINGTIEGLPPVYMFGGGREM--THPDMKLFEQMMLQHHQYIEFYDY 292 (326)
T ss_dssp ----S---CCHHHHHHHHHHHHTTSCTTSTTTSGGGSCCTTCCCEEEEEETTST--THHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ----c---cCHHHHHHHHHHhcCCCCCCCCeECcccCCcccCCCEEEEEeCccc--chHHHHHHHHHHHHCCCcEEEEEe
Confidence 0 00000 00110 122322111122699999999996 446788899999999999999999
Q ss_pred CCCCCCCCC--CCCHHHHHHHHHHHHHHHcC
Q 003363 798 PNDVHGIER--PQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 798 p~~~H~~~~--~~~~~~~~~~i~~w~~~~l~ 826 (826)
|+++|.+.. .+...++...+.+||+++++
T Consensus 293 ~g~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 323 (326)
T 3d7r_A 293 PKMVHDFPIYPIRQSHKAIKQIAKSIDEDVT 323 (326)
T ss_dssp TTCCTTGGGSSSHHHHHHHHHHHHHHTSCCC
T ss_pred CCCcccccccCCHHHHHHHHHHHHHHHHHhh
Confidence 999998765 24445788999999988763
|
| >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-19 Score=186.74 Aligned_cols=231 Identities=13% Similarity=0.058 Sum_probs=150.2
Q ss_pred CCCeeEEEEEEecCCCC----CCCCCcEEEEEcCCCCCCCCccchH--HHHHH-HHCCcEEEEECCCCCCCCchhhhhcC
Q 003363 571 GAQKPFEAIFVSSSHKK----DCSCDPLIVVLHGGPHSVSLSSYSK--SLAFL-SSVGYSLLIVNYRGSLGFGEEALQSL 643 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~----~~~~~P~vv~~HGg~~~~~~~~~~~--~~~~l-a~~G~~Vl~~d~rG~~g~G~~~~~~~ 643 (826)
..+..+.+.+|.|++++ +.+++|+||++||++.. ...|.. .+..+ ++.||.|+.+|+++++......
T Consensus 16 ~~~~~~~~~v~~P~~~~~~~~~~~~~p~vv~~HG~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---- 89 (263)
T 2uz0_A 16 VLDMEWGVNVLYPDANRVEEPECEDIPVLYLLHGMSGN--HNSWLKRTNVERLLRGTNLIVVMPNTSNGWYTDTQY---- 89 (263)
T ss_dssp TTTEEEEEEEEECC---------CCBCEEEEECCTTCC--TTHHHHHSCHHHHTTTCCCEEEECCCTTSTTSBCTT----
T ss_pred hhCCceeEEEEeCCCccccCCcCCCCCEEEEECCCCCC--HHHHHhccCHHHHHhcCCeEEEEECCCCCccccCCC----
Confidence 35678999999998752 35789999999998755 334544 34444 5589999999998854321100
Q ss_pred CCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCC-CCchh
Q 003363 644 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI-PDWCY 722 (826)
Q Consensus 644 ~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~-~~~~~ 722 (826)
.........+|+...++.+..+..+|+++++|+|||+||++++.++. +|++++++++.+|..+...+...... ....+
T Consensus 90 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 168 (263)
T 2uz0_A 90 GFDYYTALAEELPQVLKRFFPNMTSKREKTFIAGLSMGGYGCFKLAL-TTNRFSHAASFSGALSFQNFSPESQNLGSPAY 168 (263)
T ss_dssp SCBHHHHHHTHHHHHHHHHCTTBCCCGGGEEEEEETHHHHHHHHHHH-HHCCCSEEEEESCCCCSSSCCGGGTTCSCHHH
T ss_pred cccHHHHHHHHHHHHHHHHhccccCCCCceEEEEEChHHHHHHHHHh-CccccceEEEecCCcchhhccccccccccchh
Confidence 00111111344555555443323467899999999999999999999 99999999999998765432110000 00000
Q ss_pred h-hhccCcCCccCCCCCChhhHHHHhhcCcccccCCCC--CcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 003363 723 V-ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK--TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 799 (826)
Q Consensus 723 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~--~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~ 799 (826)
. ..++. .. ...+...+|...+.++. +|+|++||++|..+ ..++.+++++++.|.++++++++|
T Consensus 169 ~~~~~~~---------~~---~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v--~~~~~~~~~l~~~g~~~~~~~~~g 234 (263)
T 2uz0_A 169 WRGVFGE---------IR---DWTTSPYSLESLAKKSDKKTKLWAWCGEQDFLY--EANNLAVKNLKKLGFDVTYSHSAG 234 (263)
T ss_dssp HHHHHCC---------CS---CTTTSTTSHHHHGGGCCSCSEEEEEEETTSTTH--HHHHHHHHHHHHTTCEEEEEEESC
T ss_pred HHHHcCC---------hh---hhccccCCHHHHHHhccCCCeEEEEeCCCchhh--HHHHHHHHHHHHCCCCeEEEECCC
Confidence 0 00110 00 01122345555555554 79999999999988 467899999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 800 DVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 800 ~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
+|.+.. ..+.+..+++||.++++
T Consensus 235 -~H~~~~---~~~~~~~~~~~l~~~l~ 257 (263)
T 2uz0_A 235 -THEWYY---WEKQLEVFLTTLPIDFK 257 (263)
T ss_dssp -CSSHHH---HHHHHHHHHHHSSSCCC
T ss_pred -CcCHHH---HHHHHHHHHHHHHhhcc
Confidence 997631 23667889999988764
|
| >4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-19 Score=188.72 Aligned_cols=230 Identities=13% Similarity=0.091 Sum_probs=153.0
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch---HHHHHHHHCCcEEEEECC--CCCC---------CC
Q 003363 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVNY--RGSL---------GF 635 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~---~~~~~la~~G~~Vl~~d~--rG~~---------g~ 635 (826)
...|.++...+|.|++++ .+++|+||++||++... ..|. .....+++.||.|+++|. ||.+ |.
T Consensus 30 ~~~~~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~~--~~~~~~~~~~~~~~~~g~~vv~~d~~~rg~~~~~~~~~~~G~ 106 (283)
T 4b6g_A 30 QTLQCEMKFAVYLPNNPE-NRPLGVIYWLSGLTCTE--QNFITKSGFQRYAAEHQVIVVAPDTSPRGEQVPNDDAYDLGQ 106 (283)
T ss_dssp TTTTEEEEEEEEECCCTT-CCCEEEEEEECCTTCCS--HHHHHHSCTHHHHHHHTCEEEEECSSCCSTTSCCCSSTTSBT
T ss_pred hhhCCceEEEEEeCCCCC-CCCCCEEEEEcCCCCCc--cchhhcccHHHHHhhCCeEEEEeccccccccccccccccccC
Confidence 445788999999998754 67899999999987553 2332 234667788999999995 4432 12
Q ss_pred chhhhhcCCC-CCC-cch-HHHHH-HHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh
Q 003363 636 GEEALQSLPG-KVG-SQD-VNDVL-TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711 (826)
Q Consensus 636 G~~~~~~~~~-~~~-~~~-~~D~~-~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~ 711 (826)
|..+....+. .+. ... ...+. +.+.++.+.. -+.+|++|+|||+||++++.++.++|++|+++++.+|+++....
T Consensus 107 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~~s~~~~~~~~ 185 (283)
T 4b6g_A 107 SAGFYLNATEQPWAANYQMYDYILNELPRLIEKHF-PTNGKRSIMGHSMGGHGALVLALRNQERYQSVSAFSPILSPSLV 185 (283)
T ss_dssp TBCTTSBCCSTTGGGTCBHHHHHHTHHHHHHHHHS-CEEEEEEEEEETHHHHHHHHHHHHHGGGCSCEEEESCCCCGGGS
T ss_pred CCcccccCccCcccchhhHHHHHHHHHHHHHHHhC-CCCCCeEEEEEChhHHHHHHHHHhCCccceeEEEECCccccccC
Confidence 2221111110 110 111 22222 3344444443 24689999999999999999999999999999999998764321
Q ss_pred ccCCCCCCch---hhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCC--CCcEEEEEeCCCCCCCcH-HHHHHHHHH
Q 003363 712 VGTTDIPDWC---YVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV--KTPTIFLLGAQDLRVPVS-NGLQYARAL 785 (826)
Q Consensus 712 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i--~~PvLii~G~~D~~vp~~-~~~~~~~~l 785 (826)
. |. +...++. ....+...+|...+.++ .+|+|++||+.|.+++.. ++.+++++|
T Consensus 186 ~-------~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~~~~~~~~~~~~l 245 (283)
T 4b6g_A 186 P-------WGEKAFTAYLGK-------------DREKWQQYDANSLIQQGYKVQGMRIDQGLEDEFLPTQLRTEDFIETC 245 (283)
T ss_dssp H-------HHHHHHHHHHCS-------------CGGGGGGGCHHHHHHHTCCCSCCEEEEETTCTTHHHHTCHHHHHHHH
T ss_pred c-------chhhhHHhhcCC-------------chHHHHhcCHHHHHHhcccCCCEEEEecCCCccCcchhhHHHHHHHH
Confidence 0 10 0011111 00122334454444443 469999999999999762 288999999
Q ss_pred HhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 786 REKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 786 ~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
++.|++++++++||++|.+.. .......+++|+.++|+
T Consensus 246 ~~~g~~~~~~~~~g~~H~~~~---~~~~l~~~l~~~~~~l~ 283 (283)
T 4b6g_A 246 RAANQPVDVRFHKGYDHSYYF---IASFIGEHIAYHAAFLK 283 (283)
T ss_dssp HHHTCCCEEEEETTCCSSHHH---HHHHHHHHHHHHHTTCC
T ss_pred HHcCCCceEEEeCCCCcCHhH---HHHHHHHHHHHHHHhcC
Confidence 999999999999999998631 23566789999999885
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.4e-18 Score=209.29 Aligned_cols=329 Identities=12% Similarity=0.032 Sum_probs=212.9
Q ss_pred ceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceeccc-------EEEEeCCCCCeEE
Q 003363 97 KAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGA-------SAVVPSPSGSKLL 169 (826)
Q Consensus 97 ~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~-------~~~~~SPdG~~la 169 (826)
.....+.+||||++|+|...... ......||++++ .+++.++|+..+ ..+ ..++|||||+ ++
T Consensus 53 ~~v~~~~~SPDG~~la~~s~~~~---~~~~~~i~~~d~--~~g~~~~lt~~~-----~~~~~~~~~~~~~~~SpDg~-ll 121 (1045)
T 1k32_A 53 GVINNARFFPDGRKIAIRVMRGS---SLNTADLYFYNG--ENGEIKRITYFS-----GKSTGRRMFTDVAGFDPDGN-LI 121 (1045)
T ss_dssp SEEEEEEECTTSSEEEEEEEEST---TCCEEEEEEEET--TTTEEEECCCCC-----EEEETTEECSEEEEECTTCC-EE
T ss_pred CcccCeEECCCCCEEEEEEeecc---CCCCCeEEEEEC--CCCCeEEcccCC-----CcccccccccccccCCCCCE-EE
Confidence 34567778999999999865521 013567888876 344567776654 334 7899999998 77
Q ss_pred EEecCCC---CCCeEEEEe-cCCceeEEEec-------------------------------------------------
Q 003363 170 VVRNPEN---ESPIQFELW-SQSQLEKEFHV------------------------------------------------- 196 (826)
Q Consensus 170 ~~~~~~~---~~~~~~~i~-~~~~~~~~~~~------------------------------------------------- 196 (826)
|+...++ ...++|.+. .++...+++..
T Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~ 201 (1045)
T 1k32_A 122 ISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVD 201 (1045)
T ss_dssp EEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEEC
T ss_pred EEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcC
Confidence 8765431 233566555 33332221100
Q ss_pred -------------------CCCccccccC---C----------CcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCC
Q 003363 197 -------------------PQTVHGSVYA---D----------GWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG 244 (826)
Q Consensus 197 -------------------~~~~~g~v~~---~----------~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~ 244 (826)
...-...+|. + ..+..++|||||++|+|..... ...|+.......
T Consensus 202 ~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~---i~~~d~~~~~l~ 278 (1045)
T 1k32_A 202 MSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGS---IYIFNPDTEKIE 278 (1045)
T ss_dssp CSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTE---EEEECTTTCCEE
T ss_pred CCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCE---EEEecCCceEee
Confidence 0000001110 0 1134678999999999975221 111211000000
Q ss_pred ----------CCCccCCCCCCcceee-cCCCccCCCccCceEEEEEccCCceEeccCCCCCC-ccceEEEeeCCCCCccE
Q 003363 245 ----------SSDKDCNSWKGQGDWE-EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL-SVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 245 ----------~~~~~~~~~~~~~~~~-~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~-~~~~~~wSPDg~~~~~~ 312 (826)
.....+........|+ || |..++......|+++++.+++.+.+ ..... .+..++|+ ||+.
T Consensus 279 ~l~~~~~~~~~~~~~~~~~v~~~~~S~pd-G~~la~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~s-dg~~---- 350 (1045)
T 1k32_A 279 KIEIGDLESPEDRIISIPSKFAEDFSPLD-GDLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGD-TKVA---- 350 (1045)
T ss_dssp ECCCCCCCBCCSEEEECGGGGEEEEEECG-GGCEEEEETTEEEEECTTSSBEEEC--SCCSCEEEEEECSS-SEEE----
T ss_pred eeccCcccccccccccccccceeeecCCC-CCEEEEEEcCEEEEEcCCCCceEEc--cCCCcceEEeeeEc-CCCe----
Confidence 0000112234567799 88 4444444478899999999988887 33333 67789999 9998
Q ss_pred EEEEeecCcceeeeeeeeccCCCceE-EEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEec
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALY-AVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~ 391 (826)
|+|.+. ...|| ++|+ .+++.+.++.+......+.|||||++|++.+.
T Consensus 351 l~~~s~---------------~~~l~~~~d~-----------------~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~ 398 (1045)
T 1k32_A 351 FIHGTR---------------EGDFLGIYDY-----------------RTGKAEKFEENLGNVFAMGVDRNGKFAVVAND 398 (1045)
T ss_dssp EEEEET---------------TEEEEEEEET-----------------TTCCEEECCCCCCSEEEEEECTTSSEEEEEET
T ss_pred EEEEEC---------------CCceEEEEEC-----------------CCCCceEecCCccceeeeEECCCCCEEEEECC
Confidence 998873 23789 8998 77778888865567888999999999998875
Q ss_pred cCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC------
Q 003363 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG------ 465 (826)
Q Consensus 392 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~------ 465 (826)
+ ..|++||+.+++.+.+.... ...+..++|||||++|++.+...
T Consensus 399 ~-----------~~v~~~d~~tg~~~~~~~~~-------------------~~~v~~~~~SpDG~~la~~~~~~~~~~~~ 448 (1045)
T 1k32_A 399 R-----------FEIMTVDLETGKPTVIERSR-------------------EAMITDFTISDNSRFIAYGFPLKHGETDG 448 (1045)
T ss_dssp T-----------SEEEEEETTTCCEEEEEECS-------------------SSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred C-----------CeEEEEECCCCceEEeccCC-------------------CCCccceEECCCCCeEEEEecCccccccC
Confidence 4 36999999886643322111 01235778999999998876643
Q ss_pred -CeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCC
Q 003363 466 -SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSP 509 (826)
Q Consensus 466 -~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~ 509 (826)
....|+.+|+++++...++..........|++||+.|++.....
T Consensus 449 ~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~ 493 (1045)
T 1k32_A 449 YVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRS 493 (1045)
T ss_dssp CCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred CCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEeccc
Confidence 45789999999999888887665555678999999998877543
|
| >4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.2e-19 Score=183.81 Aligned_cols=197 Identities=19% Similarity=0.209 Sum_probs=141.4
Q ss_pred EEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHC--CcEEEEECCCC---CCCCchhhhhc--CCCCCCc---
Q 003363 580 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRG---SLGFGEEALQS--LPGKVGS--- 649 (826)
Q Consensus 580 ~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~--G~~Vl~~d~rG---~~g~G~~~~~~--~~~~~~~--- 649 (826)
...|.. +++++|+||++||.+.. ...|....+.|+.+ ++.++.++-+. ..+.|..|... .......
T Consensus 56 ~~~p~~--~~~~~plVI~LHG~G~~--~~~~~~~~~~l~~~~~~~~~v~P~Ap~~~~~~~~G~~Wfd~~~~~~~~~~~~~ 131 (285)
T 4fhz_A 56 GRRGAA--PGEATSLVVFLHGYGAD--GADLLGLAEPLAPHLPGTAFVAPDAPEPCRANGFGFQWFPIPWLDGSSETAAA 131 (285)
T ss_dssp EEEESC--TTCCSEEEEEECCTTBC--HHHHHTTHHHHGGGSTTEEEEEECCSEECTTSSSCEESSCCHHHHCCCHHHHH
T ss_pred ecCCCC--CCCCCcEEEEEcCCCCC--HHHHHHHHHHHHHhCCCeEEEecCCCcccccCCCcccccccccccCcccchhh
Confidence 444543 67889999999995433 33455556666543 88899987431 12234433110 0000001
Q ss_pred ----chHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhh
Q 003363 650 ----QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 725 (826)
Q Consensus 650 ----~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~ 725 (826)
....++.+.++.++++..+|++||+|+|+|+||++++.++.++|+.|+++|..++...
T Consensus 132 ~~~~~~~~~l~~~i~~~~~~~~id~~ri~l~GfS~Gg~~a~~~a~~~p~~~a~vv~~sG~l~------------------ 193 (285)
T 4fhz_A 132 EGMAAAARDLDAFLDERLAEEGLPPEALALVGFSQGTMMALHVAPRRAEEIAGIVGFSGRLL------------------ 193 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSSSCCSEEEEESCCCS------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccceEEEEeCHHHHHHHHHHHhCcccCceEEEeecCcc------------------
Confidence 1134566666777776679999999999999999999999999999999998876321
Q ss_pred ccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCC
Q 003363 726 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 805 (826)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 805 (826)
..+... ...+.++|+|++||++|.+||+++++++++.|+++|.++++++|++.||.+.
T Consensus 194 -------------~~~~~~---------~~~~~~~Pvl~~hG~~D~~Vp~~~~~~~~~~L~~~g~~~~~~~y~g~gH~i~ 251 (285)
T 4fhz_A 194 -------------APERLA---------EEARSKPPVLLVHGDADPVVPFADMSLAGEALAEAGFTTYGHVMKGTGHGIA 251 (285)
T ss_dssp -------------CHHHHH---------HHCCCCCCEEEEEETTCSSSCTHHHHHHHHHHHHTTCCEEEEEETTCCSSCC
T ss_pred -------------Cchhhh---------hhhhhcCcccceeeCCCCCcCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
Confidence 001100 0123468999999999999999999999999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHHHHc
Q 003363 806 RPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 806 ~~~~~~~~~~~i~~w~~~~l 825 (826)
.+.+..+.+||+++|
T Consensus 252 -----~~~l~~~~~fL~~~L 266 (285)
T 4fhz_A 252 -----PDGLSVALAFLKERL 266 (285)
T ss_dssp -----HHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHHHHC
Confidence 356788999999987
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=181.37 Aligned_cols=206 Identities=11% Similarity=-0.039 Sum_probs=145.5
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-----cchHHHHHHHHC----CcEEEEECCCCCCCCchhhhhc
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-----SYSKSLAFLSSV----GYSLLIVNYRGSLGFGEEALQS 642 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-----~~~~~~~~la~~----G~~Vl~~d~rG~~g~G~~~~~~ 642 (826)
.+..+.+.+|.|++++..+++|+||++||++...... .+...+..|+++ ||.|+.+|+++.+.. .
T Consensus 42 ~~~~~~~~v~~P~~~~~~~~~P~vv~lHG~g~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~vv~~d~~~~~~~---~--- 115 (268)
T 1jjf_A 42 TNSTRPARVYLPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPNTNAAGPG---I--- 115 (268)
T ss_dssp TTEEEEEEEEECTTCCTTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEECCCCCCTT---C---
T ss_pred cCCceEEEEEeCCCCCCCCCccEEEEECCCCCCcchhhhccccHHHHHHHHHHcCCCCCEEEEEeCCCCCCcc---c---
Confidence 5678999999999876678899999999977543211 123346677776 599999999985321 0
Q ss_pred CCCCCCcchHHH-HHHHHHHHHHcCCC--CCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCC
Q 003363 643 LPGKVGSQDVND-VLTAIDHVIDMGLA--NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD 719 (826)
Q Consensus 643 ~~~~~~~~~~~D-~~~~i~~l~~~~~~--d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~ 719 (826)
...+ ....++ +.++++++.++..+ |+++|+|+|||+||++++.++.++|++|+++++.+|..++..
T Consensus 116 -~~~~-~~~~~~~~~~~~~~l~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s~~~~~~~--------- 184 (268)
T 1jjf_A 116 -ADGY-ENFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAPNTYP--------- 184 (268)
T ss_dssp -SCHH-HHHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESCCTTSCC---------
T ss_pred -cccH-HHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEECHHHHHHHHHHHhCchhhhheEEeCCCCCCCc---------
Confidence 0011 011233 44566677665444 789999999999999999999999999999999998654311
Q ss_pred chhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCC-cEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeC
Q 003363 720 WCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKT-PTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 798 (826)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~-PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p 798 (826)
+ ...+.. .. .. ...+. |+|++||++|..+| .++++++.|++.|++++++++|
T Consensus 185 ~--~~~~~~---------~~-~~-------------~~~~~pp~li~~G~~D~~v~--~~~~~~~~l~~~g~~~~~~~~~ 237 (268)
T 1jjf_A 185 N--ERLFPD---------GG-KA-------------AREKLKLLFIACGTNDSLIG--FGQRVHEYCVANNINHVYWLIQ 237 (268)
T ss_dssp H--HHHCTT---------TT-HH-------------HHHHCSEEEEEEETTCTTHH--HHHHHHHHHHHTTCCCEEEEET
T ss_pred h--hhhcCc---------ch-hh-------------hhhcCceEEEEecCCCCCcc--HHHHHHHHHHHCCCceEEEEcC
Confidence 0 000000 00 00 01123 59999999999986 4778999999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 799 NDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 799 ~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
+++|.+.. ..+.+..+++||.++
T Consensus 238 g~~H~~~~---~~~~~~~~~~~l~~~ 260 (268)
T 1jjf_A 238 GGGHDFNV---WKPGLWNFLQMADEA 260 (268)
T ss_dssp TCCSSHHH---HHHHHHHHHHHHHHH
T ss_pred CCCcCHhH---HHHHHHHHHHHHHhc
Confidence 99998742 235567888999875
|
| >3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.80 E-value=8.3e-19 Score=176.58 Aligned_cols=197 Identities=16% Similarity=0.125 Sum_probs=142.7
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcC-CCC----CC
Q 003363 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL-PGK----VG 648 (826)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~-~~~----~~ 648 (826)
.+++..++.|. ..+.|+||++||++.. ...|......|++ ||.|+++|.++..+.|..+.... ... ..
T Consensus 16 ~~l~~~~~~~~----~~~~p~vv~lHG~g~~--~~~~~~~~~~l~~-~~~vv~~d~~~~~~~g~~~~~~~~~~~~~~~~~ 88 (223)
T 3b5e_A 16 LAFPYRLLGAG----KESRECLFLLHGSGVD--ETTLVPLARRIAP-TATLVAARGRIPQEDGFRWFERIDPTRFEQKSI 88 (223)
T ss_dssp SSSCEEEESTT----SSCCCEEEEECCTTBC--TTTTHHHHHHHCT-TSEEEEECCSEEETTEEESSCEEETTEECHHHH
T ss_pred CCceEEEeCCC----CCCCCEEEEEecCCCC--HHHHHHHHHhcCC-CceEEEeCCCCCcCCccccccccCCCcccHHHH
Confidence 34555555443 2334999999997655 3467777777765 99999999876422222221100 000 01
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccC
Q 003363 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 728 (826)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 728 (826)
....+++.+.++++.++..+|.++++|+|||+||.+++.++.++|++++++|+.+|..... .
T Consensus 89 ~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~------------------~ 150 (223)
T 3b5e_A 89 LAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLD------------------H 150 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCS------------------S
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcHHHHHHHHHHhCccccceEEEecCccCcc------------------c
Confidence 1235667777777777655788999999999999999999999999999999998864310 0
Q ss_pred cCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCC
Q 003363 729 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 808 (826)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~ 808 (826)
+ .....+++|+|++||++|..+|++.++ +++.+++.|.++++++++ ++|.+.
T Consensus 151 ---------~--------------~~~~~~~~P~li~~G~~D~~v~~~~~~-~~~~l~~~g~~~~~~~~~-~gH~~~--- 202 (223)
T 3b5e_A 151 ---------V--------------PATDLAGIRTLIIAGAADETYGPFVPA-LVTLLSRHGAEVDARIIP-SGHDIG--- 202 (223)
T ss_dssp ---------C--------------CCCCCTTCEEEEEEETTCTTTGGGHHH-HHHHHHHTTCEEEEEEES-CCSCCC---
T ss_pred ---------c--------------ccccccCCCEEEEeCCCCCcCCHHHHH-HHHHHHHCCCceEEEEec-CCCCcC---
Confidence 0 012345789999999999999999999 999999999999999999 999885
Q ss_pred CHHHHHHHHHHHHHHHc
Q 003363 809 SDFESFLNIGLWFKKYC 825 (826)
Q Consensus 809 ~~~~~~~~i~~w~~~~l 825 (826)
.+....+.+||++.+
T Consensus 203 --~~~~~~i~~~l~~~~ 217 (223)
T 3b5e_A 203 --DPDAAIVRQWLAGPI 217 (223)
T ss_dssp --HHHHHHHHHHHHCC-
T ss_pred --HHHHHHHHHHHHhhh
Confidence 244678999998654
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=174.78 Aligned_cols=185 Identities=13% Similarity=0.133 Sum_probs=140.5
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEE--CCCCCCCCchhhhhcCCCCCC----cchHHHHHHHHHHHH
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIV--NYRGSLGFGEEALQSLPGKVG----SQDVNDVLTAIDHVI 663 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~--d~rG~~g~G~~~~~~~~~~~~----~~~~~D~~~~i~~l~ 663 (826)
++.|+||++||++.. ...|...+..|++ ||.|+++ |++|.+.... +.......+. ..++.++.+.++++.
T Consensus 36 ~~~~~vv~~HG~~~~--~~~~~~~~~~l~~-g~~v~~~~~d~~g~g~s~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (226)
T 2h1i_A 36 TSKPVLLLLHGTGGN--ELDLLPLAEIVDS-EASVLSVRGNVLENGMPRF-FRRLAEGIFDEEDLIFRTKELNEFLDEAA 111 (226)
T ss_dssp TTSCEEEEECCTTCC--TTTTHHHHHHHHT-TSCEEEECCSEEETTEEES-SCEEETTEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEecCCCC--hhHHHHHHHHhcc-CceEEEecCcccCCcchhh-ccccCccCcChhhHHHHHHHHHHHHHHHH
Confidence 578999999997755 4467777888887 9999999 7777432210 0000001111 122455666777777
Q ss_pred HcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhH
Q 003363 664 DMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDL 743 (826)
Q Consensus 664 ~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (826)
+...++.++++++|||+||.+++.++.++|++++++|+.+|......
T Consensus 112 ~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~--------------------------------- 158 (226)
T 2h1i_A 112 KEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRG--------------------------------- 158 (226)
T ss_dssp HHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSS---------------------------------
T ss_pred hhcCCCcccEEEEEEChHHHHHHHHHHhChhhhCEEEEeCCCCCcCc---------------------------------
Confidence 77667889999999999999999999999999999999998753210
Q ss_pred HHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 744 TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 744 ~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
......+++|+|+++|++|..+|++.++.+++.+++.+.++++ ++++++|.+. .+....+.+||.+
T Consensus 159 --------~~~~~~~~~p~l~~~G~~D~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~gH~~~-----~~~~~~~~~~l~~ 224 (226)
T 2h1i_A 159 --------MQLANLAGKSVFIAAGTNDPICSSAESEELKVLLENANANVTM-HWENRGHQLT-----MGEVEKAKEWYDK 224 (226)
T ss_dssp --------CCCCCCTTCEEEEEEESSCSSSCHHHHHHHHHHHHTTTCEEEE-EEESSTTSCC-----HHHHHHHHHHHHH
T ss_pred --------cccccccCCcEEEEeCCCCCcCCHHHHHHHHHHHHhcCCeEEE-EeCCCCCCCC-----HHHHHHHHHHHHH
Confidence 0112235789999999999999999999999999988888998 9999999884 4677899999998
Q ss_pred Hc
Q 003363 824 YC 825 (826)
Q Consensus 824 ~l 825 (826)
+|
T Consensus 225 ~l 226 (226)
T 2h1i_A 225 AF 226 (226)
T ss_dssp HC
T ss_pred hC
Confidence 75
|
| >3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=5e-18 Score=172.77 Aligned_cols=194 Identities=17% Similarity=0.147 Sum_probs=138.5
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHHC-----CcEEEEECCCCCC------CCchhhhhc----CCCCCCcchHH
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV-----GYSLLIVNYRGSL------GFGEEALQS----LPGKVGSQDVN 653 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~-----G~~Vl~~d~rG~~------g~G~~~~~~----~~~~~~~~~~~ 653 (826)
.++.|+||++||.+.. ...|...+..|+.+ ||.|+.+|.++.. +.+..|... .........++
T Consensus 20 ~~~~p~vv~lHG~g~~--~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 97 (239)
T 3u0v_A 20 GRHSASLIFLHGSGDS--GQGLRMWIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNVWFDRFKITNDCPEHLESID 97 (239)
T ss_dssp SCCCEEEEEECCTTCC--HHHHHHHHHHHHTSCCCCSSEEEEEECCCEEECGGGTTCEEECSSCCSSSSSSSCCCHHHHH
T ss_pred CCCCcEEEEEecCCCc--hhhHHHHHHHHhhcccCCCceEEEeCCCCccccccCCCCccccceeccCCCcccccchhhHH
Confidence 4678999999996654 44566777777765 6999999986421 111111100 00011112344
Q ss_pred HHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcC
Q 003363 654 DVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 730 (826)
Q Consensus 654 D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (826)
++.+.+..+++. ..+|.++++|+|||+||++++.++.++|++++++|+.+|..+....
T Consensus 98 ~~~~~l~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~------------------- 158 (239)
T 3u0v_A 98 VMCQVLTDLIDEEVKSGIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFLNKASA------------------- 158 (239)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHHHCTTSSEEEEESCCCCTTCH-------------------
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEChhhHHHHHHHHhCccccceEEEecCCCCchhH-------------------
Confidence 444444444432 3478899999999999999999999999999999999987542110
Q ss_pred CccCCCCCChhhHHHHhhcCcccccCCCCCc-EEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCC
Q 003363 731 KDSFTESPSVEDLTRFHSKSPISHISKVKTP-TIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQS 809 (826)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P-vLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~ 809 (826)
...... .....+| +|++||++|..+|++++.++++.|++.+.+++++++++++|.+.
T Consensus 159 -----------~~~~~~-------~~~~~~pp~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~g~~H~~~---- 216 (239)
T 3u0v_A 159 -----------VYQALQ-------KSNGVLPELFQCHGTADELVLHSWAEETNSMLKSLGVTTKFHSFPNVYHELS---- 216 (239)
T ss_dssp -----------HHHHHH-------HCCSCCCCEEEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEETTCCSSCC----
T ss_pred -----------HHHHHH-------hhccCCCCEEEEeeCCCCccCHHHHHHHHHHHHHcCCcEEEEEeCCCCCcCC----
Confidence 000000 1223456 99999999999999999999999999999999999999999986
Q ss_pred HHHHHHHHHHHHHHHcC
Q 003363 810 DFESFLNIGLWFKKYCK 826 (826)
Q Consensus 810 ~~~~~~~i~~w~~~~l~ 826 (826)
.+....+.+||+++|+
T Consensus 217 -~~~~~~~~~~l~~~l~ 232 (239)
T 3u0v_A 217 -KTELDILKLWILTKLP 232 (239)
T ss_dssp -HHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHHhCC
Confidence 4678899999999874
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=192.04 Aligned_cols=230 Identities=13% Similarity=0.090 Sum_probs=152.2
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcch
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~ 651 (826)
+|..+.++++.|.+ .++.|+||++||.+... ...+......|+++||.|+++|+||. |.+...... ...
T Consensus 176 ~g~~l~~~~~~P~~---~~~~P~vv~~hG~~~~~-~~~~~~~~~~l~~~G~~V~~~D~~G~---G~s~~~~~~----~~~ 244 (415)
T 3mve_A 176 EKGKITAHLHLTNT---DKPHPVVIVSAGLDSLQ-TDMWRLFRDHLAKHDIAMLTVDMPSV---GYSSKYPLT----EDY 244 (415)
T ss_dssp SSSEEEEEEEESCS---SSCEEEEEEECCTTSCG-GGGHHHHHHTTGGGTCEEEEECCTTS---GGGTTSCCC----SCT
T ss_pred CCEEEEEEEEecCC---CCCCCEEEEECCCCccH-HHHHHHHHHHHHhCCCEEEEECCCCC---CCCCCCCCC----CCH
Confidence 57789999999973 56789999999966432 22344456778899999999999994 443211111 111
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh-cc-CCCCCCchhhhhccCc
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-VG-TTDIPDWCYVESYGSK 729 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~-~~-~~~~~~~~~~~~~~~~ 729 (826)
......+++++.+...+|.++|+|+|||+||++++.++..+|++++++|+.+|+.+.... .. ....+. .+...+..
T Consensus 245 ~~~~~~v~~~l~~~~~vd~~~i~l~G~S~GG~~a~~~a~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 322 (415)
T 3mve_A 245 SRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQQMPK-MYLDVLAS- 322 (415)
T ss_dssp THHHHHHHHHGGGCTTEEEEEEEEEEETHHHHHHHHHHHHTTTTCCEEEEESCCCSHHHHCHHHHTTSCH-HHHHHHHH-
T ss_pred HHHHHHHHHHHHhCcCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEECCccccccccHHHHHHhHH-HHHHHHHH-
Confidence 233456777887777788899999999999999999999999999999999998642111 00 000000 00000000
Q ss_pred CCccCCCCC-Chh-hHHHHhhcCcccc----cCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCC-CCC
Q 003363 730 GKDSFTESP-SVE-DLTRFHSKSPISH----ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN-DVH 802 (826)
Q Consensus 730 ~~~~~~~~~-~~~-~~~~~~~~sp~~~----~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~-~~H 802 (826)
.+...+ ... ....+...++... +.++++|+|+++|++|..+|++++..+.+ .+.+++++++++ ..|
T Consensus 323 ---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp~~~~~~l~~----~~~~~~l~~i~g~~~h 395 (415)
T 3mve_A 323 ---RLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSPYSDNQMVAF----FSTYGKAKKISSKTIT 395 (415)
T ss_dssp ---HTTCSSBCHHHHHHHGGGGCTTTTTTTTSSCBSSCEEEEEETTCSSSCHHHHHHHHH----TBTTCEEEEECCCSHH
T ss_pred ---HhCCCccCHHHHHHHHhhcCcccccccccCCCCCCEEEEEeCCCCCCCHHHHHHHHH----hCCCceEEEecCCCcc
Confidence 000000 111 1122223333222 46789999999999999999999887666 455689999998 333
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 803 GIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 803 ~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
. ...+....+.+||+++|+
T Consensus 396 ~-----~~~~~~~~i~~fL~~~L~ 414 (415)
T 3mve_A 396 Q-----GYEQSLDLAIKWLEDELL 414 (415)
T ss_dssp H-----HHHHHHHHHHHHHHHHHT
T ss_pred c-----chHHHHHHHHHHHHHHhc
Confidence 2 345778899999999874
|
| >1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.7e-19 Score=192.16 Aligned_cols=250 Identities=15% Similarity=0.166 Sum_probs=154.3
Q ss_pred eccCCCeeEEEEEEecCCCC--CCCCCcEEEEEcCCCCCCCCccch------HHHHHHHHCCcEEEEECCCCCCCCchhh
Q 003363 568 LTKGAQKPFEAIFVSSSHKK--DCSCDPLIVVLHGGPHSVSLSSYS------KSLAFLSSVGYSLLIVNYRGSLGFGEEA 639 (826)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~--~~~~~P~vv~~HGg~~~~~~~~~~------~~~~~la~~G~~Vl~~d~rG~~g~G~~~ 639 (826)
+...+|..++++.+.|.... ..++.|+||++||.+... ..|. ..+..|+++||.|+++|+||.+.+....
T Consensus 32 ~~~~dG~~l~~~~~~~~~~~~~~~~~~~~vvl~HG~~~~~--~~~~~~~~~~~~a~~l~~~G~~vi~~D~~G~G~S~~~~ 109 (377)
T 1k8q_A 32 VVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASA--TNWISNLPNNSLAFILADAGYDVWLGNSRGNTWARRNL 109 (377)
T ss_dssp EECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCG--GGGSSSCTTTCHHHHHHHTTCEEEECCCTTSTTSCEES
T ss_pred eEcCCCCEEEEEEecCCCCCccccCCCCeEEEECCCCCch--hhhhcCCCcccHHHHHHHCCCCEEEecCCCCCCCCCCC
Confidence 44557888988888665211 114679999999976553 2232 3455889999999999999955433210
Q ss_pred h--hcCCC--CCCcc-hHH-HHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC---ceeEEEecCCccchhh
Q 003363 640 L--QSLPG--KVGSQ-DVN-DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLAL 710 (826)
Q Consensus 640 ~--~~~~~--~~~~~-~~~-D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~p~~~~~~ 710 (826)
. ..... .+... ..+ |+.++++++++. .+.+++.|+|||+||.+++.++.++|+ +++++|+.+|......
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~D~~~~i~~~~~~--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~v~~lvl~~~~~~~~~ 187 (377)
T 1k8q_A 110 YYSPDSVEFWAFSFDEMAKYDLPATIDFILKK--TGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALAPVATVKY 187 (377)
T ss_dssp SSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHH--HCCSCEEEEEETHHHHHHHHHHHHCHHHHTTEEEEEEESCCSCCSS
T ss_pred CCCCCcccccCccHHHHHhhhHHHHHHHHHHh--cCcCceEEEEechhhHHHHHHHhcCchhhhhhhEEEEeCCchhccc
Confidence 0 00000 11111 234 888899988776 345789999999999999999999998 8999999998654321
Q ss_pred hccCC---------------C----CCCchhhhhc----------------------cC-------cCCcc-CCCCCC--
Q 003363 711 MVGTT---------------D----IPDWCYVESY----------------------GS-------KGKDS-FTESPS-- 739 (826)
Q Consensus 711 ~~~~~---------------~----~~~~~~~~~~----------------------~~-------~~~~~-~~~~~~-- 739 (826)
..... . .+........ +. ..... +...+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (377)
T 1k8q_A 188 TETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFDTMNLNMSRLDVYLSHNPAGT 267 (377)
T ss_dssp CCSGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHHHHHHCCCGGGSCGGGHHHHHTTCCCCE
T ss_pred chhHHHHHHhhccHHHHhhcCccccCcHHHHHHHHHHHhhCCccHHHHHHHHHHHhcCCCcccCCHHHHHHHhccCCCCc
Confidence 10000 0 0000000000 00 00000 000000
Q ss_pred -hh------------------------hHHHHhhcC-cccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEE
Q 003363 740 -VE------------------------DLTRFHSKS-PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 793 (826)
Q Consensus 740 -~~------------------------~~~~~~~~s-p~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 793 (826)
.. ....+.... +...+.++++|+|+++|++|..+|++.+.++++.+.+. .+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~---~~ 344 (377)
T 1k8q_A 268 SVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLADPHDVDLLLSKLPNL---IY 344 (377)
T ss_dssp EHHHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEEETTCSSSCHHHHHHHHTTCTTE---EE
T ss_pred cHHHHHHHHHHHhcCCeeeccCCcchhhHHHcCCCCCcccCHhhCCCCEEEEEeCCCcccCHHHHHHHHHhCcCc---cc
Confidence 00 111111111 23347889999999999999999999998888777642 24
Q ss_pred EEEeCCCCCCCCC--CCCHHHHHHHHHHHHHHH
Q 003363 794 VIVFPNDVHGIER--PQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 794 ~~~~p~~~H~~~~--~~~~~~~~~~i~~w~~~~ 824 (826)
+++++++||.... .+...+++..|.+||++|
T Consensus 345 ~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~ 377 (377)
T 1k8q_A 345 HRKIPPYNHLDFIWAMDAPQAVYNEIVSMMGTD 377 (377)
T ss_dssp EEEETTCCTTHHHHCTTHHHHTHHHHHHHHHTC
T ss_pred EEecCCCCceEEEecCCcHHHHHHHHHHHhccC
Confidence 8999999998653 455567889999999864
|
| >1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.3e-19 Score=189.48 Aligned_cols=223 Identities=18% Similarity=0.204 Sum_probs=151.3
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CccchHHHHHHH-HCCcEEEEECCCCCCCCchhhhhcCCCCCCcchH
Q 003363 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652 (826)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~-~~~~~~~~~~la-~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~ 652 (826)
.+.+.+| +. .++.|+||++|||++... ...+...+..|+ +.||.|+++||||.+++. .....
T Consensus 67 ~i~~~~y-~~----~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~Vv~~dyrg~g~~~-----------~p~~~ 130 (311)
T 1jji_A 67 DIRVRVY-QQ----KPDSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEHK-----------FPAAV 130 (311)
T ss_dssp EEEEEEE-ES----SSSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCTTTSC-----------TTHHH
T ss_pred cEEEEEE-cC----CCCceEEEEECCcccccCChhHhHHHHHHHHHHhCCEEEEecCCCCCCCC-----------CCCcH
Confidence 7888888 42 457899999999885332 346777788887 689999999999965431 12357
Q ss_pred HHHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHhCCCc----eeEEEecCCccchhhhcc----CCCCCC-c
Q 003363 653 NDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPLCNLALMVG----TTDIPD-W 720 (826)
Q Consensus 653 ~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~----~~a~v~~~p~~~~~~~~~----~~~~~~-~ 720 (826)
+|+.++++|+.+. ..+|+++|+|+|||+||.+++.++.++++. ++++|+.+|+.+...... ...... +
T Consensus 131 ~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~~~~~~~~~ 210 (311)
T 1jji_A 131 YDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVNFVAPTPSLLEFGEGLWIL 210 (311)
T ss_dssp HHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCCSSSCCHHHHHTSSSCSSC
T ss_pred HHHHHHHHHHHhhHHHhCCCchhEEEEEeCHHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCCCCccHHHhcCCCccC
Confidence 8899999998875 236778999999999999999999887765 999999999876532100 000000 0
Q ss_pred h--hhhhccCcCCccCCCCCChhhHHHHhhcCccc-ccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEe
Q 003363 721 C--YVESYGSKGKDSFTESPSVEDLTRFHSKSPIS-HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 797 (826)
Q Consensus 721 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 797 (826)
. ....+. ..+.... .. ......+|+. .+..+ +|+||++|+.|..+ .++..++++|++.|++++++++
T Consensus 211 ~~~~~~~~~----~~~~~~~--~~-~~~~~~~p~~~~l~~~-~P~li~~G~~D~l~--~~~~~~~~~l~~~g~~~~~~~~ 280 (311)
T 1jji_A 211 DQKIMSWFS----EQYFSRE--ED-KFNPLASVIFADLENL-PPALIITAEYDPLR--DEGEVFGQMLRRAGVEASIVRY 280 (311)
T ss_dssp CHHHHHHHH----HHHCSSG--GG-GGCTTTSGGGSCCTTC-CCEEEEEEEECTTH--HHHHHHHHHHHHTTCCEEEEEE
T ss_pred CHHHHHHHH----HHhCCCC--cc-CCCcccCcccccccCC-ChheEEEcCcCcch--HHHHHHHHHHHHcCCCEEEEEE
Confidence 0 000000 0000000 00 0001123332 22222 69999999999987 5788899999999999999999
Q ss_pred CCCCCCCCCC----CCHHHHHHHHHHHHHH
Q 003363 798 PNDVHGIERP----QSDFESFLNIGLWFKK 823 (826)
Q Consensus 798 p~~~H~~~~~----~~~~~~~~~i~~w~~~ 823 (826)
+|++|.+... ....+++..+.+||++
T Consensus 281 ~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 310 (311)
T 1jji_A 281 RGVLHGFINYYPVLKAARDAINQIAALLVF 310 (311)
T ss_dssp EEEETTGGGGTTTCHHHHHHHHHHHHHHHC
T ss_pred CCCCeeccccCCcCHHHHHHHHHHHHHHhh
Confidence 9999987532 2345678889999875
|
| >3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-18 Score=182.59 Aligned_cols=216 Identities=17% Similarity=0.183 Sum_probs=147.5
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccc-hHHHHHHHHCCcEEEEECCCCCCC---------C--ch
Q 003363 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGSLG---------F--GE 637 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~-~~~~~~la~~G~~Vl~~d~rG~~g---------~--G~ 637 (826)
..++..+.+++|.|.+. ..+.|+||++||++... ..| ......++++||.|+++|+|+... + |.
T Consensus 34 ~~~~~~l~~~~~~P~~~--~~~~p~vv~lHG~~~~~--~~~~~~~~~~l~~~g~~v~~~d~~~~~~p~~~~~~~g~~~g~ 109 (304)
T 3d0k_A 34 RNADRPFTLNTYRPYGY--TPDRPVVVVQHGVLRNG--ADYRDFWIPAADRHKLLIVAPTFSDEIWPGVESYNNGRAFTA 109 (304)
T ss_dssp -CTTCCEEEEEEECTTC--CTTSCEEEEECCTTCCH--HHHHHHTHHHHHHHTCEEEEEECCTTTSCHHHHTTTTTCBCT
T ss_pred CCCCceEEEEEEeCCCC--CCCCcEEEEeCCCCCCH--HHHHHHHHHHHHHCCcEEEEeCCccccCCCccccccCccccc
Confidence 56778899999999753 35679999999987653 344 445778888999999999996411 1 11
Q ss_pred hhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC-ceeEEEecC-CccchhhhccCC
Q 003363 638 EALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARN-PLCNLALMVGTT 715 (826)
Q Consensus 638 ~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~-p~~~~~~~~~~~ 715 (826)
+. .+.......++|+.++++++.++..+|.++|+|+|||+||++++.++.++|+ +++++|+.+ |..++...
T Consensus 110 s~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~vl~~~~~~~~~~~---- 182 (304)
T 3d0k_A 110 AG---NPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAPFHAVTAANPGWYTLPTF---- 182 (304)
T ss_dssp TS---CBCCGGGSTTHHHHHHHHHHHHTTSCCCSSEEEEEETHHHHHHHHHHHHSCSTTCSEEEEESCSSCCCSST----
T ss_pred cC---CCCcccchHHHHHHHHHHHHHhccCCCCCcEEEEEeChHHHHHHHHHHHCCCCceEEEEEecCcccccCCc----
Confidence 10 0111223346789999999998867899999999999999999999999995 788888655 55442211
Q ss_pred CCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCC-----------------cHHH
Q 003363 716 DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVP-----------------VSNG 778 (826)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp-----------------~~~~ 778 (826)
...|. ++. ...+ .+|......+++|+|++||+.|..+. .+.+
T Consensus 183 -~~~~~----~~~------~~~~----------~~~~~~~~~~~~p~li~~G~~D~~~~~p~~~~~~~~~~~~~~~~~~~ 241 (304)
T 3d0k_A 183 -EHRFP----EGL------DGVG----------LTEDHLARLLAYPMTILAGDQDIATDDPNLPSEPAALRQGPHRYARA 241 (304)
T ss_dssp -TSBTT----TSS------BTTT----------CCHHHHHHHHHSCCEEEEETTCCCC--CCSCCSHHHHTTCSSHHHHH
T ss_pred -cccCc----ccc------CCCC----------CCHHHHHhhhcCCEEEEEeCCCCCccccccccChhhhccCccHHHHH
Confidence 00010 000 0000 12222223346899999999999742 3456
Q ss_pred HHHHHHHH----hCCCC--EEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 779 LQYARALR----EKGVE--TKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 779 ~~~~~~l~----~~g~~--~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
..+++.++ ..|.+ ++++++||++|.+. .....+.+||.+
T Consensus 242 ~~~~~~l~~~a~~~g~~~~~~~~~~pg~gH~~~------~~~~~~~~~~~~ 286 (304)
T 3d0k_A 242 RHYYEAGQRAAAQRGLPFGWQLQVVPGIGHDGQ------AMSQVCASLWFD 286 (304)
T ss_dssp HHHHHHHHHHHHHHTCCCCCEEEEETTCCSCHH------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCcceEEEEeCCCCCchH------HHHHHHHHHHhh
Confidence 67777776 66776 99999999999873 556777887754
|
| >2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.79 E-value=9.8e-19 Score=179.59 Aligned_cols=185 Identities=17% Similarity=0.118 Sum_probs=136.9
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEE--CCCCCCCCchhhhhc-CCCC--CCcchHHHHHHHHHHHHH
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIV--NYRGSLGFGEEALQS-LPGK--VGSQDVNDVLTAIDHVID 664 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~--d~rG~~g~G~~~~~~-~~~~--~~~~~~~D~~~~i~~l~~ 664 (826)
++.|+||++||++.. ...|...+..|++ +|.|+++ |++|.++++...... .... .....++|+.++++++.+
T Consensus 60 ~~~p~vv~~HG~~~~--~~~~~~~~~~l~~-~~~v~~~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 136 (251)
T 2r8b_A 60 AGAPLFVLLHGTGGD--ENQFFDFGARLLP-QATILSPVGDVSEHGAARFFRRTGEGVYDMVDLERATGKMADFIKANRE 136 (251)
T ss_dssp TTSCEEEEECCTTCC--HHHHHHHHHHHST-TSEEEEECCSEEETTEEESSCBCGGGCBCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCC--HhHHHHHHHhcCC-CceEEEecCCcCCCCCcccccCCCCCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 578999999997754 4466667777766 5999999 677754332110000 0000 011236777778888777
Q ss_pred cCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHH
Q 003363 665 MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLT 744 (826)
Q Consensus 665 ~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (826)
+. +.++++|+|||+||++++.++.++|++++++|+.+|......
T Consensus 137 ~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~---------------------------------- 180 (251)
T 2r8b_A 137 HY--QAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP---------------------------------- 180 (251)
T ss_dssp HH--TCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC----------------------------------
T ss_pred cc--CCCcEEEEEECHHHHHHHHHHHhCCcccCeEEEEecCCCccc----------------------------------
Confidence 63 678999999999999999999999999999999998753210
Q ss_pred HHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 745 RFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 745 ~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
......+++|+|+++|++|..+|+++++++++.+++.+.++++ ++++++|.+. .+..+.+.+||+++
T Consensus 181 -------~~~~~~~~~P~li~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~gH~~~-----~~~~~~~~~~l~~~ 247 (251)
T 2r8b_A 181 -------KISPAKPTRRVLITAGERDPICPVQLTKALEESLKAQGGTVET-VWHPGGHEIR-----SGEIDAVRGFLAAY 247 (251)
T ss_dssp -------CCCCCCTTCEEEEEEETTCTTSCHHHHHHHHHHHHHHSSEEEE-EEESSCSSCC-----HHHHHHHHHHHGGG
T ss_pred -------cccccccCCcEEEeccCCCccCCHHHHHHHHHHHHHcCCeEEE-EecCCCCccC-----HHHHHHHHHHHHHh
Confidence 0112345799999999999999999999999999987777777 6667899884 35678899999998
Q ss_pred cC
Q 003363 825 CK 826 (826)
Q Consensus 825 l~ 826 (826)
|+
T Consensus 248 l~ 249 (251)
T 2r8b_A 248 GG 249 (251)
T ss_dssp C-
T ss_pred cC
Confidence 74
|
| >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-18 Score=165.34 Aligned_cols=174 Identities=11% Similarity=0.130 Sum_probs=130.3
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (826)
++.|+||++||.+.......+......|+++||.|+++|+||.+ .+.... ......+++.++++++.+.. +
T Consensus 2 ~~~~~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g---~s~~~~----~~~~~~~~~~~~~~~~~~~~--~ 72 (176)
T 2qjw_A 2 MSRGHCILAHGFESGPDALKVTALAEVAERLGWTHERPDFTDLD---ARRDLG----QLGDVRGRLQRLLEIARAAT--E 72 (176)
T ss_dssp CSSCEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEECCCCHHHH---TCGGGC----TTCCHHHHHHHHHHHHHHHH--T
T ss_pred CCCcEEEEEeCCCCCccHHHHHHHHHHHHHCCCEEEEeCCCCCC---CCCCCC----CCCCHHHHHHHHHHHHHhcC--C
Confidence 46789999999775533224447788899999999999999943 332111 11112445556666766653 4
Q ss_pred CCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhc
Q 003363 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK 749 (826)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (826)
.++++++|||+||.+++.++.++| ++++|+.+|......+ +
T Consensus 73 ~~~~~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~~~~--------------------------~----------- 113 (176)
T 2qjw_A 73 KGPVVLAGSSLGSYIAAQVSLQVP--TRALFLMVPPTKMGPL--------------------------P----------- 113 (176)
T ss_dssp TSCEEEEEETHHHHHHHHHHTTSC--CSEEEEESCCSCBTTB--------------------------C-----------
T ss_pred CCCEEEEEECHHHHHHHHHHHhcC--hhheEEECCcCCcccc--------------------------C-----------
Confidence 579999999999999999999988 9999999886542110 0
Q ss_pred CcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 750 SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 750 sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
.+.++++|+|+++|++|..+|++.+.++++.+ +++++++ +++|.+. +...++.+.+.+||++
T Consensus 114 ----~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~-----~~~~~~~-~~~H~~~--~~~~~~~~~i~~fl~~ 175 (176)
T 2qjw_A 114 ----ALDAAAVPISIVHAWHDELIPAADVIAWAQAR-----SARLLLV-DDGHRLG--AHVQAASRAFAELLQS 175 (176)
T ss_dssp ----CCCCCSSCEEEEEETTCSSSCHHHHHHHHHHH-----TCEEEEE-SSCTTCT--TCHHHHHHHHHHHHHT
T ss_pred ----cccccCCCEEEEEcCCCCccCHHHHHHHHHhC-----CceEEEe-CCCcccc--ccHHHHHHHHHHHHHh
Confidence 04567899999999999999999999999887 3688888 8999883 5566788888888865
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=189.97 Aligned_cols=261 Identities=16% Similarity=0.129 Sum_probs=170.1
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
...++|||||++|||+...+ +..+++.+. .+++.++++...... ...+.|||||++|+|.+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~-g~~~l~~~d~~~~~~~~l~~~~~~~---------~~~~~~spdg~~l~~~~~~------ 101 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFD-GNRNYYLLNLETQQAVQLTEGKGDN---------TFGGFISTDERAFFYVKNE------ 101 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTT-SSCEEEEEETTTTEEEECCCSSCBC---------TTTCEECTTSSEEEEEETT------
T ss_pred eecCcCCCCCCEEEEEEecC-CCceEEEEECCCCcEEEeecCCCCc---------cccceECCCCCEEEEEEcC------
Confidence 56789999999999998764 555787777 555555544322111 1348899999999998542
Q ss_pred CccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003363 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (826)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lv 314 (826)
.+|+++|+++++.+.+...+.. |+|||+. |+
T Consensus 102 --------------------------------------~~l~~~d~~~~~~~~~~~~~~~-------~~~~g~~----l~ 132 (396)
T 3c5m_A 102 --------------------------------------LNLMKVDLETLEEQVIYTVDEE-------WKGYGTW----VA 132 (396)
T ss_dssp --------------------------------------TEEEEEETTTCCEEEEEECCTT-------EEEEEEE----EE
T ss_pred --------------------------------------CcEEEEECCCCCcEEEEecccc-------cCCCCCE----EE
Confidence 3699999999988877311111 7777776 66
Q ss_pred EEeec-------------Ccceeeeeee--eccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCcee
Q 003363 315 FVGWS-------------SETRKLGIKY--CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRF 379 (826)
Q Consensus 315 f~~~~-------------~~~~~~g~~~--~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~ 379 (826)
|.... .+.+...... .......||++|+ .+++.+.++........+.|
T Consensus 133 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~-----------------~~g~~~~~~~~~~~~~~~~~ 195 (396)
T 3c5m_A 133 NSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDI-----------------ETGELEVIHQDTAWLGHPIY 195 (396)
T ss_dssp CTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEET-----------------TTCCEEEEEEESSCEEEEEE
T ss_pred eccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEEC-----------------CCCcEEeeccCCcccccceE
Confidence 64311 0000000000 0024458999998 77788888766666788999
Q ss_pred cC-CCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEE
Q 003363 380 SP-DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 458 (826)
Q Consensus 380 Sp-DG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l 458 (826)
|| ||++|+|.+... ......+||++|+.++..+.++..... ..+..+.|+|||+.|
T Consensus 196 sp~dg~~l~~~~~~~-----~~~~~~~l~~~d~~~~~~~~l~~~~~~------------------~~~~~~~~spdg~~l 252 (396)
T 3c5m_A 196 RPFDDSTVGFCHEGP-----HDLVDARMWLVNEDGSNVRKIKEHAEG------------------ESCTHEFWIPDGSAM 252 (396)
T ss_dssp ETTEEEEEEEEECSC-----SSSCSCCCEEEETTSCCCEESSCCCTT------------------EEEEEEEECTTSSCE
T ss_pred CCCCCCEEEEEecCC-----CCCCCceEEEEECCCCceeEeeccCCC------------------ccccceEECCCCCEE
Confidence 99 899999998532 111225799999877654433321000 012356899999999
Q ss_pred EEEEEeCCeE--EEEEEECCCCcEEEecCCCCCeeeEEEee-cCCEEEEEEeC------------CCCCCeEEEEeeccc
Q 003363 459 LLSSIWGSSQ--VIISVNVSSGELLRITPAESNFSWSLLTL-DGDNIIAVSSS------------PVDVPQVKYGYFVDK 523 (826)
Q Consensus 459 ~~~~~~~~~~--~l~~vdl~tg~~~~lt~~~~~~~~~~~s~-dg~~l~~~~s~------------~~~p~~l~~~~~~~~ 523 (826)
++.+...+.. .|+.+|+.+|+.++++.... .. ..|++ ||+.+++.... ......|++.++.++
T Consensus 253 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 253 AYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp EEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred EEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence 8887766554 49999999999888875443 33 78899 99866654432 012267888887544
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=6e-18 Score=182.73 Aligned_cols=251 Identities=16% Similarity=0.080 Sum_probs=154.6
Q ss_pred eeeccCCC--eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-cc-----chHHHHHHH-HCCcEEEEECCCCCCCCc
Q 003363 566 ANLTKGAQ--KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SS-----YSKSLAFLS-SVGYSLLIVNYRGSLGFG 636 (826)
Q Consensus 566 ~~~~~~~g--~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~-----~~~~~~~la-~~G~~Vl~~d~rG~~g~G 636 (826)
+..++.+| ..+.++++.|.+. .++.|+|++.||....... .. ....+..|+ ++||+|+++||||.++++
T Consensus 48 Y~s~d~~G~~~~~~g~l~~P~~~--~~~~PvV~~~HG~~~~~~~~ps~~~~~~~~~~~~lal~~Gy~Vv~~D~rG~G~s~ 125 (377)
T 4ezi_A 48 YKTQSPDGNLTIASGLVAMPIHP--VGQVGIISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYMTVMPDYLGLGDNE 125 (377)
T ss_dssp EEEECTTSCEEEEEEEEEEESSC--SSCEEEEEEECCCCCSTTCSGGGCCGGGHHHHHHHTTTTCCEEEEECCTTSTTCC
T ss_pred EEEECCCCCEEEEEEEEEECCCC--CCCCcEEEEeCCCcCCcccCCCcCcccchHHHHHHHHhCCcEEEEeCCCCCCCCC
Confidence 34455445 5688999999852 4789999999997642211 11 113456678 999999999999976654
Q ss_pred hhhhhcCCCCCCc---chHHHHHHHHHHHHHc-CCCCCCcEEEEEecchHHHHHHHHHhCC----C-ceeEEEecCCccc
Q 003363 637 EEALQSLPGKVGS---QDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAP----D-KFVAAAARNPLCN 707 (826)
Q Consensus 637 ~~~~~~~~~~~~~---~~~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~a~~~p----~-~~~a~v~~~p~~~ 707 (826)
.... ....+. ..+.|...++..+.+. +..+.++|+++|||+||+++++++..+| + .+++++..++..+
T Consensus 126 ~~~~---~~~~~~~~~~~~~D~~~a~~~~~~~~g~~~~~~v~l~G~S~GG~~al~~A~~~p~~~~~l~l~g~~~~~~p~d 202 (377)
T 4ezi_A 126 LTLH---PYVQAETLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKEYPDLPVSAVAPGSAPYG 202 (377)
T ss_dssp CSSC---CTTCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTSCCCEEEEESCCCC
T ss_pred CCCc---ccccchhHHHHHHHHHHHHHHHhhccCCCCCCceEEEEECHHHHHHHHHHHHhhhhCCCCceEEEEecCcccC
Confidence 3110 101111 1233444444444443 3235689999999999999999987654 3 5889999999887
Q ss_pred hhhhccCCC---C-C--Cch-h--------------hhh-ccCcC-------Cc----------cCCCCC----ChhhHH
Q 003363 708 LALMVGTTD---I-P--DWC-Y--------------VES-YGSKG-------KD----------SFTESP----SVEDLT 744 (826)
Q Consensus 708 ~~~~~~~~~---~-~--~~~-~--------------~~~-~~~~~-------~~----------~~~~~~----~~~~~~ 744 (826)
+.......+ . . .+. + ... +...+ .. .+.... .....+
T Consensus 203 l~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~yp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (377)
T 4ezi_A 203 WEETMHFVMLEPGPRATAYLAYFFYSLQTYKSYWSGFDEIFAPPYNTLIPELMDGYHAVDEILQALPQDPLLIFQPKFSN 282 (377)
T ss_dssp HHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHCCSSCHHHHBCTTHHHHHHHHTSSCSCHHHHHHHSCSSGGGGBCHHHHH
T ss_pred HHHHHHHHhcCCCcccchhHHHHHHHHHHHHHhccCHHHHhCHHHHHHHHHHhhcccchhhhhhccCCCHHHHhchhhhh
Confidence 653321110 0 0 000 0 000 00000 00 000000 000000
Q ss_pred HHh-hcCc-c------c--ccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCC--CCCCCCCCCCHHH
Q 003363 745 RFH-SKSP-I------S--HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN--DVHGIERPQSDFE 812 (826)
Q Consensus 745 ~~~-~~sp-~------~--~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~--~~H~~~~~~~~~~ 812 (826)
.+. ..+| + . .-.++++|+|++||+.|.+||+.+++++++++++.|. ++++.+++ .+|... ...
T Consensus 283 ~~~~~~~p~~~~~l~~~~~~~~~~~~Pvli~hG~~D~~Vp~~~~~~l~~~l~~~G~-v~~~~~~~~~~~H~~~----~~~ 357 (377)
T 4ezi_A 283 GIISKTDRNTEILKINFNHYDFKPTAPLLLVGTKGDRDVPYAGAEMAYHSFRKYSD-FVWIKSVSDALDHVQA----HPF 357 (377)
T ss_dssp HHHTTCSTTHHHHHHHHCCCCSCCSSCEEEEECTTCSSSCHHHHHHHHHHHHTTCS-CEEEEESCSSCCTTTT----HHH
T ss_pred hcccccchHHHHHHHHhcccCCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhcCC-EEEEEcCCCCCCccCh----HHH
Confidence 011 0122 1 0 1125679999999999999999999999999999999 99999999 899764 346
Q ss_pred HHHHHHHHHHHHcC
Q 003363 813 SFLNIGLWFKKYCK 826 (826)
Q Consensus 813 ~~~~i~~w~~~~l~ 826 (826)
....+++||+++++
T Consensus 358 ~~~~~~~wl~~~~~ 371 (377)
T 4ezi_A 358 VLKEQVDFFKQFER 371 (377)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhc
Confidence 77899999999864
|
| >2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase, putative lipase; HET: CME CSO; 1.90A {Saccharomyces cerevisiae} PDB: 2y6v_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-18 Score=189.84 Aligned_cols=249 Identities=19% Similarity=0.212 Sum_probs=154.9
Q ss_pred eeccCCCeeEEEEEEecCC---CCCCCCCcEEEEEcCCCCCCCCccchHHHHHHH----HCCc---EEEEECCCCCCCCc
Q 003363 567 NLTKGAQKPFEAIFVSSSH---KKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS----SVGY---SLLIVNYRGSLGFG 636 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~---~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la----~~G~---~Vl~~d~rG~~g~G 636 (826)
.+...+|..+++..+.|.+ ..+.++.|+||++||.+.. ...|...+..|+ ..|| .|+++|+|| +|
T Consensus 24 ~~~~~dg~~l~~~~~g~~~~~~~~~~~~~~~vvllHG~~~~--~~~~~~~~~~L~~~~~~~G~~~~~vi~~D~~G---~G 98 (398)
T 2y6u_A 24 TLCATDRLELTYDVYTSAERQRRSRTATRLNLVFLHGSGMS--KVVWEYYLPRLVAADAEGNYAIDKVLLIDQVN---HG 98 (398)
T ss_dssp BSSTTCCCEEEEEEEEESCTTTCCTTCEEEEEEEECCTTCC--GGGGGGGGGGSCCCBTTTTEEEEEEEEECCTT---SH
T ss_pred cccCCCceEEEEEEEecCCCCCCCCCCCCCeEEEEcCCCCc--HHHHHHHHHHHHHhhhhcCcceeEEEEEcCCC---CC
Confidence 4556788999999998864 1223456899999997755 456777777787 4589 999999999 66
Q ss_pred hhhhhcCCCCCCcch----HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhc
Q 003363 637 EEALQSLPGKVGSQD----VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712 (826)
Q Consensus 637 ~~~~~~~~~~~~~~~----~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~ 712 (826)
.+............. ++|+.++++.+.....+++.++.|+||||||.+++.++.++|++++++|+.+|........
T Consensus 99 ~S~~~~~~~~~~~~~~~~~~~dl~~~l~~~~~~~~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~ 178 (398)
T 2y6u_A 99 DSAVRNRGRLGTNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLLILIEPVVITRKAI 178 (398)
T ss_dssp HHHHHTTTTBCSCCCHHHHHHHHHHHHHHHTCSSTTCSEEEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCCCCC
T ss_pred CCCCCCccccCCCCCcchHHHHHHHHHHHhcccccccCCceEEEEEChhHHHHHHHHHhCchheeEEEEecccccccccc
Confidence 654321110011222 3444444443321111344569999999999999999999999999999999876531100
Q ss_pred c--CCCCCC----c--hhhhhccCcC-------------C--ccCCCCCChhhHHHHhh---------------------
Q 003363 713 G--TTDIPD----W--CYVESYGSKG-------------K--DSFTESPSVEDLTRFHS--------------------- 748 (826)
Q Consensus 713 ~--~~~~~~----~--~~~~~~~~~~-------------~--~~~~~~~~~~~~~~~~~--------------------- 748 (826)
. ....+. + .+...+.... . ..+......+..+.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (398)
T 2y6u_A 179 GAGRPGLPPDSPQIPENLYNSLRLKTCDHFANESEYVKYMRNGSFFTNAHSQILQNIIDFERTKASGDDEDGGPVRTKME 258 (398)
T ss_dssp SCCCTTCCTTCCCCCHHHHHHHHHTCCCEESSHHHHHHHHHHTSTTTTSCHHHHHHHHHHHEEC--------CCEEESSC
T ss_pred ccccccccccccccchhhHHHhhhhccccCCCHHHHHHHhhcCcccccCCHHHHHHHHHhcCccccccccCCCceEecCC
Confidence 0 000000 0 0000000000 0 00000011111111110
Q ss_pred ---------------cCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHH
Q 003363 749 ---------------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFES 813 (826)
Q Consensus 749 ---------------~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~ 813 (826)
......+.++++|+|+++|++|..+|++.+..+++.+. .+++++++++||.+... ...++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~~~~~~~~~l~~~~~----~~~~~~~~~~gH~~~~e-~p~~~ 333 (398)
T 2y6u_A 259 QAQNLLCYMNMQTFAPFLISNVKFVRKRTIHIVGARSNWCPPQNQLFLQKTLQ----NYHLDVIPGGSHLVNVE-APDLV 333 (398)
T ss_dssp HHHHHHTTSCGGGTHHHHHHHGGGCCSEEEEEEETTCCSSCHHHHHHHHHHCS----SEEEEEETTCCTTHHHH-SHHHH
T ss_pred chhhhhhhcccccchHHHHHhccccCCCEEEEEcCCCCCCCHHHHHHHHHhCC----CceEEEeCCCCccchhc-CHHHH
Confidence 01124567889999999999999999999888887775 47999999999976543 34578
Q ss_pred HHHHHHHHHHHc
Q 003363 814 FLNIGLWFKKYC 825 (826)
Q Consensus 814 ~~~i~~w~~~~l 825 (826)
.+.+.+||.+++
T Consensus 334 ~~~i~~fl~~~~ 345 (398)
T 2y6u_A 334 IERINHHIHEFV 345 (398)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 889999998865
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-18 Score=176.66 Aligned_cols=184 Identities=15% Similarity=0.069 Sum_probs=137.8
Q ss_pred EEEEecCCCCC-CCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHH
Q 003363 578 AIFVSSSHKKD-CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL 656 (826)
Q Consensus 578 ~~~~~P~~~~~-~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~ 656 (826)
+.+|.|.+... +++.|+||++||++.. ...|...+..|+++||.|+++|+|++. ...|+.
T Consensus 34 ~~~~~p~~~~~~g~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~~s~-----------------~~~~~~ 94 (258)
T 2fx5_A 34 CRIYRPRDLGQGGVRHPVILWGNGTGAG--PSTYAGLLSHWASHGFVVAAAETSNAG-----------------TGREML 94 (258)
T ss_dssp EEEEEESSTTGGGCCEEEEEEECCTTCC--GGGGHHHHHHHHHHTCEEEEECCSCCT-----------------TSHHHH
T ss_pred EEEEeCCCCcccCCCceEEEEECCCCCC--chhHHHHHHHHHhCCeEEEEecCCCCc-----------------cHHHHH
Confidence 67888874211 3378999999997764 467888899999999999999999631 124555
Q ss_pred HHHHHHHHc---------CCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhcc
Q 003363 657 TAIDHVIDM---------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 727 (826)
Q Consensus 657 ~~i~~l~~~---------~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~ 727 (826)
.+++++.+. ..+|.++++|+|||+||.+++.++ .+++++++++.+|....
T Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a--~~~~v~~~v~~~~~~~~------------------- 153 (258)
T 2fx5_A 95 ACLDYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGSIMAG--QDTRVRTTAPIQPYTLG------------------- 153 (258)
T ss_dssp HHHHHHHHHHHSSSSTTTTTEEEEEEEEEEEEHHHHHHHHHT--TSTTCCEEEEEEECCSS-------------------
T ss_pred HHHHHHHhcccccccccccccCccceEEEEEChHHHHHHHhc--cCcCeEEEEEecCcccc-------------------
Confidence 556665542 235778999999999999999887 45789999988764320
Q ss_pred CcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHH-HHHHHHHHHhCCCCEEEEEeCCCCCCCCC
Q 003363 728 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSN-GLQYARALREKGVETKVIVFPNDVHGIER 806 (826)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~-~~~~~~~l~~~g~~~~~~~~p~~~H~~~~ 806 (826)
.+. ....+.++++|+|+++|++|..+|+.. ..++++. .+.+++++++++++|.+..
T Consensus 154 ---------~~~-----------~~~~~~~i~~P~lii~G~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~H~~~~ 210 (258)
T 2fx5_A 154 ---------LGH-----------DSASQRRQQGPMFLMSGGGDTIAFPYLNAQPVYRR---ANVPVFWGERRYVSHFEPV 210 (258)
T ss_dssp ---------TTC-----------CGGGGGCCSSCEEEEEETTCSSSCHHHHTHHHHHH---CSSCEEEEEESSCCTTSST
T ss_pred ---------ccc-----------chhhhccCCCCEEEEEcCCCcccCchhhHHHHHhc---cCCCeEEEEECCCCCcccc
Confidence 000 012456688999999999999999986 7777766 3467999999999998875
Q ss_pred CCCHHHHHHHHHHHHHHHc
Q 003363 807 PQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 807 ~~~~~~~~~~i~~w~~~~l 825 (826)
.... ++...+.+||+++|
T Consensus 211 ~~~~-~~~~~i~~fl~~~l 228 (258)
T 2fx5_A 211 GSGG-AYRGPSTAWFRFQL 228 (258)
T ss_dssp TTCG-GGHHHHHHHHHHHH
T ss_pred chHH-HHHHHHHHHHHHHh
Confidence 5443 77889999999775
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 | Back alignment and structure |
|---|
Probab=99.77 E-value=8e-19 Score=174.65 Aligned_cols=193 Identities=15% Similarity=0.225 Sum_probs=138.9
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH--HHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK--SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~--~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
.+|..+++..+.|. ..++.|+||++||++.. ...|.. ....|+++||.|+++|+|| +|.+..........
T Consensus 14 ~~g~~l~~~~~~p~---~~~~~~~vv~~hG~~~~--~~~~~~~~~~~~l~~~G~~v~~~d~~g---~g~s~~~~~~~~~~ 85 (210)
T 1imj_A 14 VQGQALFFREALPG---SGQARFSVLLLHGIRFS--SETWQNLGTLHRLAQAGYRAVAIDLPG---LGHSKEAAAPAPIG 85 (210)
T ss_dssp ETTEEECEEEEECS---SSCCSCEEEECCCTTCC--HHHHHHHTHHHHHHHTTCEEEEECCTT---SGGGTTSCCSSCTT
T ss_pred eCCeEEEEEEeCCC---CCCCCceEEEECCCCCc--cceeecchhHHHHHHCCCeEEEecCCC---CCCCCCCCCcchhh
Confidence 36788999999886 34578999999997754 345655 4788999999999999999 44443221111111
Q ss_pred cc-hHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhcc
Q 003363 649 SQ-DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 727 (826)
Q Consensus 649 ~~-~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~ 727 (826)
.. ..+++...++.+ +.++++++|||+||.+++.++.++|++++++|+.+|......
T Consensus 86 ~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~~----------------- 142 (210)
T 1imj_A 86 ELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDKI----------------- 142 (210)
T ss_dssp SCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGGGS-----------------
T ss_pred hcchHHHHHHHHHHh------CCCCeEEEEECchHHHHHHHHHhCccccceEEEeCCCccccc-----------------
Confidence 11 115555555543 346899999999999999999999999999999988643100
Q ss_pred CcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCC
Q 003363 728 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 807 (826)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~ 807 (826)
....+.++++|+|+++|++|. ++.+..+.+ +.+ .+.+++++++++|.+...
T Consensus 143 -----------------------~~~~~~~~~~p~l~i~g~~D~-~~~~~~~~~-~~~----~~~~~~~~~~~~H~~~~~ 193 (210)
T 1imj_A 143 -----------------------NAANYASVKTPALIVYGDQDP-MGQTSFEHL-KQL----PNHRVLIMKGAGHPCYLD 193 (210)
T ss_dssp -----------------------CHHHHHTCCSCEEEEEETTCH-HHHHHHHHH-TTS----SSEEEEEETTCCTTHHHH
T ss_pred -----------------------cchhhhhCCCCEEEEEcCccc-CCHHHHHHH-hhC----CCCCEEEecCCCcchhhc
Confidence 112234578999999999999 988777666 444 358999999999986433
Q ss_pred CCHHHHHHHHHHHHHHH
Q 003363 808 QSDFESFLNIGLWFKKY 824 (826)
Q Consensus 808 ~~~~~~~~~i~~w~~~~ 824 (826)
. ..++.+.+.+||++.
T Consensus 194 ~-~~~~~~~i~~fl~~~ 209 (210)
T 1imj_A 194 K-PEEWHTGLLDFLQGL 209 (210)
T ss_dssp C-HHHHHHHHHHHHHTC
T ss_pred C-HHHHHHHHHHHHHhc
Confidence 3 446788889998753
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.77 E-value=7.8e-18 Score=177.96 Aligned_cols=221 Identities=10% Similarity=0.105 Sum_probs=137.9
Q ss_pred ccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
...+|..++++.+.|.+. ..++.|+||++||.+.. ...|...+..|+++||.|+++|+||.. |.+... ...+.
T Consensus 13 ~~~dG~~l~~~~~~p~~~-~~~~~~~VvllHG~g~~--~~~~~~~~~~L~~~G~~Vi~~D~rGh~--G~S~~~--~~~~~ 85 (305)
T 1tht_A 13 RVNNGQELHVWETPPKEN-VPFKNNTILIASGFARR--MDHFAGLAEYLSTNGFHVFRYDSLHHV--GLSSGS--IDEFT 85 (305)
T ss_dssp EETTTEEEEEEEECCCTT-SCCCSCEEEEECTTCGG--GGGGHHHHHHHHTTTCCEEEECCCBCC------------CCC
T ss_pred EcCCCCEEEEEEecCccc-CCCCCCEEEEecCCccC--chHHHHHHHHHHHCCCEEEEeeCCCCC--CCCCCc--cccee
Confidence 344678899888877531 12356899999996644 457888999999999999999999951 333211 11121
Q ss_pred c-chHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchh--hhh
Q 003363 649 S-QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY--VES 725 (826)
Q Consensus 649 ~-~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~--~~~ 725 (826)
. ...+|+.++++++.+. +.++++|+||||||.+++.++.+ | +++++|+.+|..++...........+.. ...
T Consensus 86 ~~~~~~D~~~~~~~l~~~---~~~~~~lvGhSmGG~iA~~~A~~-~-~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (305)
T 1tht_A 86 MTTGKNSLCTVYHWLQTK---GTQNIGLIAASLSARVAYEVISD-L-ELSFLITAVGVVNLRDTLEKALGFDYLSLPIDE 160 (305)
T ss_dssp HHHHHHHHHHHHHHHHHT---TCCCEEEEEETHHHHHHHHHTTT-S-CCSEEEEESCCSCHHHHHHHHHSSCGGGSCGGG
T ss_pred hHHHHHHHHHHHHHHHhC---CCCceEEEEECHHHHHHHHHhCc-c-CcCEEEEecCchhHHHHHHHHhhhhhhhcchhh
Confidence 1 2257788888888743 34789999999999999999888 7 8899998887654321100000000000 000
Q ss_pred ccCcCCccCCCCC-Chh-hHHHHhhc------CcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEe
Q 003363 726 YGSKGKDSFTESP-SVE-DLTRFHSK------SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 797 (826)
Q Consensus 726 ~~~~~~~~~~~~~-~~~-~~~~~~~~------sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 797 (826)
... .. .+.... ... ........ +....+.++++|+|+++|++|..+|++.+.++++.+.. ..++++++
T Consensus 161 ~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~vp~~~~~~l~~~i~~--~~~~l~~i 236 (305)
T 1tht_A 161 LPN-DL-DFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIRT--GHCKLYSL 236 (305)
T ss_dssp CCS-EE-EETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSCEEEEEETTCTTSCHHHHHHHHTTCTT--CCEEEEEE
T ss_pred Ccc-cc-cccccccCHHHHHHHHHhccccchhhHHHHHhhcCCCEEEEEeCCCCccCHHHHHHHHHhcCC--CCcEEEEe
Confidence 000 00 000000 000 00111111 12345778999999999999999999998887766532 34899999
Q ss_pred CCCCCCCC
Q 003363 798 PNDVHGIE 805 (826)
Q Consensus 798 p~~~H~~~ 805 (826)
|++||.+.
T Consensus 237 ~~agH~~~ 244 (305)
T 1tht_A 237 LGSSHDLG 244 (305)
T ss_dssp TTCCSCTT
T ss_pred CCCCCchh
Confidence 99999875
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-17 Score=169.51 Aligned_cols=222 Identities=13% Similarity=0.136 Sum_probs=144.0
Q ss_pred eccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCC
Q 003363 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (826)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~ 647 (826)
+...+|..++..... +.|+||++||++.. ...|...+..|+ +||.|+++|+||.+. +...
T Consensus 7 ~~~~~g~~l~~~~~g--------~~~~vv~lHG~~~~--~~~~~~~~~~l~-~~~~vi~~d~~G~G~---S~~~------ 66 (262)
T 3r0v_A 7 VPSSDGTPIAFERSG--------SGPPVVLVGGALST--RAGGAPLAERLA-PHFTVICYDRRGRGD---SGDT------ 66 (262)
T ss_dssp EECTTSCEEEEEEEE--------CSSEEEEECCTTCC--GGGGHHHHHHHT-TTSEEEEECCTTSTT---CCCC------
T ss_pred EEcCCCcEEEEEEcC--------CCCcEEEECCCCcC--hHHHHHHHHHHh-cCcEEEEEecCCCcC---CCCC------
Confidence 344567777655442 24789999997765 456777888887 899999999999544 3211
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCch--hhhh
Q 003363 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC--YVES 725 (826)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~--~~~~ 725 (826)
....++++.+.+..+++. ++ +++.|+|||+||.+++.++.++| +++++|+.+|........... ...+. ....
T Consensus 67 ~~~~~~~~~~~~~~~~~~--l~-~~~~l~G~S~Gg~ia~~~a~~~p-~v~~lvl~~~~~~~~~~~~~~-~~~~~~~~~~~ 141 (262)
T 3r0v_A 67 PPYAVEREIEDLAAIIDA--AG-GAAFVFGMSSGAGLSLLAAASGL-PITRLAVFEPPYAVDDSRPPV-PPDYQTRLDAL 141 (262)
T ss_dssp SSCCHHHHHHHHHHHHHH--TT-SCEEEEEETHHHHHHHHHHHTTC-CEEEEEEECCCCCCSTTSCCC-CTTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh--cC-CCeEEEEEcHHHHHHHHHHHhCC-CcceEEEEcCCcccccccchh-hhHHHHHHHHH
Confidence 123466666666666665 34 78999999999999999999999 999999999865432111000 00000 0000
Q ss_pred ccC--------cCCccCCCCCChhhHHHHh------------------------hcCcccccCCCCCcEEEEEeCCCCCC
Q 003363 726 YGS--------KGKDSFTESPSVEDLTRFH------------------------SKSPISHISKVKTPTIFLLGAQDLRV 773 (826)
Q Consensus 726 ~~~--------~~~~~~~~~~~~~~~~~~~------------------------~~sp~~~~~~i~~PvLii~G~~D~~v 773 (826)
... .........+ .+..+.+. ...+...+.++++|+|+++|++|..+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~ 220 (262)
T 3r0v_A 142 LAEGRRGDAVTYFMTEGVGVP-PDLVAQMQQAPMWPGMEAVAHTLPYDHAVMGDNTIPTARFASISIPTLVMDGGASPAW 220 (262)
T ss_dssp HHTTCHHHHHHHHHHHTSCCC-HHHHHHHHTSTTHHHHHHTGGGHHHHHHHHTTSCCCHHHHTTCCSCEEEEECTTCCHH
T ss_pred hhccchhhHHHHHhhcccCCC-HHHHHHHHhhhcccchHHHHhhhhhhhhhhhcCCCCHHHcCcCCCCEEEEeecCCCCC
Confidence 000 0000000000 11111111 11234567788999999999999999
Q ss_pred CcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 774 PVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 774 p~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
|++.+..+.+.+.+ +++++++++||. +...++.+.+.+||++
T Consensus 221 ~~~~~~~~~~~~~~----~~~~~~~~~gH~----~~p~~~~~~i~~fl~~ 262 (262)
T 3r0v_A 221 IRHTAQELADTIPN----ARYVTLENQTHT----VAPDAIAPVLVEFFTR 262 (262)
T ss_dssp HHHHHHHHHHHSTT----EEEEECCCSSSS----CCHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHhCCC----CeEEEecCCCcc----cCHHHHHHHHHHHHhC
Confidence 99998888887754 799999999993 2455788889999864
|
| >3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=173.70 Aligned_cols=231 Identities=16% Similarity=0.180 Sum_probs=137.1
Q ss_pred ccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
...+|..++...+. ..|.||++||.+.. ...|...+..|+++||.|+++|+||.| .+.. ...
T Consensus 4 ~~~~g~~l~y~~~G--------~g~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G~G---~S~~-----~~~ 65 (271)
T 3ia2_A 4 VAKDGTQIYFKDWG--------SGKPVLFSHGWLLD--ADMWEYQMEYLSSRGYRTIAFDRRGFG---RSDQ-----PWT 65 (271)
T ss_dssp ECTTSCEEEEEEES--------SSSEEEEECCTTCC--GGGGHHHHHHHHTTTCEEEEECCTTST---TSCC-----CSS
T ss_pred EcCCCCEEEEEccC--------CCCeEEEECCCCCc--HHHHHHHHHHHHhCCceEEEecCCCCc---cCCC-----CCC
Confidence 34467777654432 23568999997655 567888889999999999999999954 4321 111
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHh-CCCceeEEEecCCccchhhhccC--CCCCC-ch---
Q 003363 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMVGT--TDIPD-WC--- 721 (826)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~p~~~~~~~~~~--~~~~~-~~--- 721 (826)
....+++.+.+..+++. ++.+++.|+||||||.+++.+++. .|++++++|+.++.......... ...+. ..
T Consensus 66 ~~~~~~~a~d~~~~l~~--l~~~~~~lvGhS~GG~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (271)
T 3ia2_A 66 GNDYDTFADDIAQLIEH--LDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGVPLDVFARF 143 (271)
T ss_dssp CCSHHHHHHHHHHHHHH--HTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH--hCCCCceEEEEcccHHHHHHHHHHhCCcccceEEEEccCCccccCCCCCcccccHHHHHHH
Confidence 22344444444444443 345789999999999877666554 58999999998764321100000 00000 00
Q ss_pred ----------hhhhccCcCCccC-CCCCChhh-------------------HHHHhhcCcccccCCCCCcEEEEEeCCCC
Q 003363 722 ----------YVESYGSKGKDSF-TESPSVED-------------------LTRFHSKSPISHISKVKTPTIFLLGAQDL 771 (826)
Q Consensus 722 ----------~~~~~~~~~~~~~-~~~~~~~~-------------------~~~~~~~sp~~~~~~i~~PvLii~G~~D~ 771 (826)
+...+........ ........ ...+...+....+.++++|+|+++|++|.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lvi~G~~D~ 223 (271)
T 3ia2_A 144 KTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQ 223 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCBCHHHHTTCCSCEEEEEETTCS
T ss_pred HHHHHhhHHHHHHHhhHhhhccccccccCHHHHHHHHhhhhhccHHHHHHHHHHhhccCCcccccCCCCCEEEEEeCCCC
Confidence 0000000000000 00000000 00111222334467899999999999999
Q ss_pred CCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 772 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 772 ~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
.+|++.+.++.+.+.. ..+++++|++||.+... ...++.+.+.+||++
T Consensus 224 ~~p~~~~~~~~~~~~~---~~~~~~~~~~gH~~~~e-~p~~~~~~i~~Fl~~ 271 (271)
T 3ia2_A 224 IVPFETTGKVAAELIK---GAELKVYKDAPHGFAVT-HAQQLNEDLLAFLKR 271 (271)
T ss_dssp SSCGGGTHHHHHHHST---TCEEEEETTCCTTHHHH-THHHHHHHHHHHHTC
T ss_pred cCChHHHHHHHHHhCC---CceEEEEcCCCCccccc-CHHHHHHHHHHHhhC
Confidence 9999886555544432 37999999999987643 345788889999863
|
| >1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB: 2wkw_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-17 Score=179.22 Aligned_cols=199 Identities=13% Similarity=0.157 Sum_probs=143.7
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch-------HHHHHHHHCCcEEEEECCCCCCCCchhhhhc------
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-------KSLAFLSSVGYSLLIVNYRGSLGFGEEALQS------ 642 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~-------~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~------ 642 (826)
+...++.|.+ .+.|.||++||++.. ...|. ..+..|+++||.|+++|+||.+..+......
T Consensus 50 ~~~~~~~p~~----~~~~~vvl~HG~g~~--~~~~~~~pdg~~~~~~~l~~~G~~V~~~D~~G~G~S~~~~~~~~~~~~~ 123 (328)
T 1qlw_A 50 MYVRYQIPQR----AKRYPITLIHGCCLT--GMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVKLG 123 (328)
T ss_dssp EEEEEEEETT----CCSSCEEEECCTTCC--GGGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHHHHTT
T ss_pred EEEEEEccCC----CCCccEEEEeCCCCC--CCccccCCCCchHHHHHHHHCCCeEEEECCCCcccCCCCCccccccccc
Confidence 5555666752 234679999997754 34555 4788899999999999999965443321100
Q ss_pred ---------------------------CCCC-----CCcchHHH------------------HHHHHHHHHHcCCCCCCc
Q 003363 643 ---------------------------LPGK-----VGSQDVND------------------VLTAIDHVIDMGLANPSK 672 (826)
Q Consensus 643 ---------------------------~~~~-----~~~~~~~D------------------~~~~i~~l~~~~~~d~~r 672 (826)
.+.. +....+++ +.+++..+++.. ++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~ 199 (328)
T 1qlw_A 124 KAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAIKL----DG 199 (328)
T ss_dssp SSCGGGSCCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHHHHH----TS
T ss_pred ccCcccccceeccchhhhhhHhhhcccCCccCcCccCCHHHHHHHHHHhCccccccCCChhHHHHHHHHHHHHh----CC
Confidence 0000 00000222 555666666552 38
Q ss_pred EEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcc
Q 003363 673 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPI 752 (826)
Q Consensus 673 v~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 752 (826)
+.|+|||+||.+++.++.++|++++++|+.+|... ..+.
T Consensus 200 ~~lvGhS~GG~~a~~~a~~~p~~v~~~v~~~p~~~-----------------------------------------~~~~ 238 (328)
T 1qlw_A 200 TVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGEC-----------------------------------------PKPE 238 (328)
T ss_dssp EEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCC-----------------------------------------CCGG
T ss_pred ceEEEECcccHHHHHHHHhChhheeEEEEeCCCCC-----------------------------------------CCHH
Confidence 99999999999999999999999999999987430 0001
Q ss_pred cccCCCCCcEEEEEeCCCCCCCc-----HHHHHHHHHHHhCCCCEEEEEeCCCC-----CCCCCCCCHHHHHHHHHHHHH
Q 003363 753 SHISKVKTPTIFLLGAQDLRVPV-----SNGLQYARALREKGVETKVIVFPNDV-----HGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 753 ~~~~~i~~PvLii~G~~D~~vp~-----~~~~~~~~~l~~~g~~~~~~~~p~~~-----H~~~~~~~~~~~~~~i~~w~~ 822 (826)
.....+++|+|++||++|..+|+ ++++.+++.+++.|.+++++++|++| |.+....+..++.+.+.+||+
T Consensus 239 ~~~~~~~~PvLii~G~~D~~~p~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~gi~G~~H~~~~~~~~~~~~~~i~~fl~ 318 (328)
T 1qlw_A 239 DVKPLTSIPVLVVFGDHIEEFPRWAPRLKACHAFIDALNAAGGKGQLMSLPALGVHGNSHMMMQDRNNLQVADLILDWIG 318 (328)
T ss_dssp GCGGGTTSCEEEEECSSCTTCTTTHHHHHHHHHHHHHHHHTTCCEEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHHHHH
T ss_pred HHhhccCCCEEEEeccCCccccchhhHHHHHHHHHHHHHHhCCCceEEEcCCCCcCCCcccchhccCHHHHHHHHHHHHH
Confidence 11223568999999999999997 99999999999989999999999665 988766656789999999999
Q ss_pred HHc
Q 003363 823 KYC 825 (826)
Q Consensus 823 ~~l 825 (826)
+++
T Consensus 319 ~~~ 321 (328)
T 1qlw_A 319 RNT 321 (328)
T ss_dssp HTC
T ss_pred hcc
Confidence 875
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.7e-17 Score=169.66 Aligned_cols=249 Identities=14% Similarity=0.164 Sum_probs=166.5
Q ss_pred EEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCC
Q 003363 99 WTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENES 178 (826)
Q Consensus 99 ~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~ 178 (826)
.....+||||+.+++.. ...++++++.+. ++..++.... ....+..++|||||++|++.....++.
T Consensus 44 v~~~~~spdg~~l~~~~----------~~~i~~~d~~~~-~~~~~~~~~~---~~~~~~~~~~spdg~~l~~~~~~~~~~ 109 (297)
T 2ojh_A 44 FEAPNWSPDGKYLLLNS----------EGLLYRLSLAGD-PSPEKVDTGF---ATICNNDHGISPDGALYAISDKVEFGK 109 (297)
T ss_dssp CEEEEECTTSSEEEEEE----------TTEEEEEESSSC-CSCEECCCTT---CCCBCSCCEECTTSSEEEEEECTTTSS
T ss_pred eEeeEECCCCCEEEEEc----------CCeEEEEeCCCC-CCceEecccc---ccccccceEECCCCCEEEEEEeCCCCc
Confidence 33455699999998852 236777776431 2333333221 013467789999999999998655456
Q ss_pred CeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcc
Q 003363 179 PIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 257 (826)
Q Consensus 179 ~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (826)
..+|.+. .++....+... ... ..+.|||||++|+|.+...
T Consensus 110 ~~l~~~~~~~~~~~~~~~~-~~~----------~~~~~spdg~~l~~~~~~~---------------------------- 150 (297)
T 2ojh_A 110 SAIYLLPSTGGTPRLMTKN-LPS----------YWHGWSPDGKSFTYCGIRD---------------------------- 150 (297)
T ss_dssp CEEEEEETTCCCCEECCSS-SSE----------EEEEECTTSSEEEEEEEET----------------------------
T ss_pred ceEEEEECCCCceEEeecC-CCc----------cceEECCCCCEEEEEECCC----------------------------
Confidence 7788877 44443333221 112 6789999999999876542
Q ss_pred eeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCce
Q 003363 258 DWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCAL 337 (826)
Q Consensus 258 ~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l 337 (826)
+...||.+++.+++.+.+ ......+..+.|+|||+. |++.+.. +....|
T Consensus 151 -------------~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~----l~~~~~~------------~~~~~i 199 (297)
T 2ojh_A 151 -------------QVFDIYSMDIDSGVETRL--THGEGRNDGPDYSPDGRW----IYFNSSR------------TGQMQI 199 (297)
T ss_dssp -------------TEEEEEEEETTTCCEEEC--CCSSSCEEEEEECTTSSE----EEEEECT------------TSSCEE
T ss_pred -------------CceEEEEEECCCCcceEc--ccCCCccccceECCCCCE----EEEEecC------------CCCccE
Confidence 225788888888888887 455556788999999998 8887632 123478
Q ss_pred EEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCC
Q 003363 338 YAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (826)
Q Consensus 338 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~ 417 (826)
|.+++ .++....++.+......+.|||||++|++.+.+......+......|+++|+.+++..
T Consensus 200 ~~~~~-----------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 262 (297)
T 2ojh_A 200 WRVRV-----------------DGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE 262 (297)
T ss_dssp EEEET-----------------TSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE
T ss_pred EEECC-----------------CCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCce
Confidence 88887 6677788887777788899999999999998764211001113367999999876543
Q ss_pred CcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC
Q 003363 418 SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 465 (826)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~ 465 (826)
.+.. +.. ....+..+.|+|||+.|++.+...
T Consensus 263 ~~~~-------~~~----------~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 263 TLFD-------LFG----------GQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEE-------EEE----------STTTSCSCCBCTTSSEEEEEEECC
T ss_pred eeec-------cCC----------CCcccccceECCCCCEEEEEEecc
Confidence 2221 100 011345789999999998887654
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.6e-17 Score=168.86 Aligned_cols=228 Identities=14% Similarity=0.148 Sum_probs=143.9
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cc-hHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCc
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SY-SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~-~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~ 649 (826)
+|.++ .+|.|.+ ++.|+||++|||++..... .+ ......+++.||.|+++|||+.+++ ...
T Consensus 13 ~~~~~--~~y~p~~----~~~p~iv~~HGGg~~~g~~~~~~~~~~~~l~~~g~~Vi~vdYrlaPe~-----------~~p 75 (274)
T 2qru_A 13 NGATV--TIYPTTT----EPTNYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLALDYLLAPNT-----------KID 75 (274)
T ss_dssp TSCEE--EEECCSS----SSCEEEEEECCSTTTSCCGGGCCHHHHHHHHTTTEEEEEECCCCTTTS-----------CHH
T ss_pred CCeeE--EEEcCCC----CCCcEEEEEeCccccCCChhhchHHHHHHHHHCCCEEEEeCCCCCCCC-----------CCc
Confidence 34444 5677752 5689999999998754332 33 4456678889999999999985532 223
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHH---hCCCceeEEEecCCccchhhhccCC--CCCC--chh
Q 003363 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG---QAPDKFVAAAARNPLCNLALMVGTT--DIPD--WCY 722 (826)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~---~~p~~~~a~v~~~p~~~~~~~~~~~--~~~~--~~~ 722 (826)
..++|+.++++|+.++.. ++++|+|+|+|+||.+++.++. ..+..++++++.+|..+........ ..+. -..
T Consensus 76 ~~~~D~~~al~~l~~~~~-~~~~i~l~G~SaGG~lA~~~a~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (274)
T 2qru_A 76 HILRTLTETFQLLNEEII-QNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQFLVNFYGYTDLEFIKEPRKLLKQAISAKE 154 (274)
T ss_dssp HHHHHHHHHHHHHHHHTT-TTCCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCSCSGGGGSCCCSCSSCCCSGG
T ss_pred HHHHHHHHHHHHHHhccc-cCCcEEEEEECHHHHHHHHHHHHHhcCCCCceEEEEEcccccccccCCchhhccccccHHH
Confidence 358999999999998742 2789999999999999999887 3577889999888877622110000 0000 000
Q ss_pred hhhccCcCCccCCCCCC---hh---------hHHHHhhc--------Ccc--cccCCCCCcEEEEEeCCCCCCCcHHHHH
Q 003363 723 VESYGSKGKDSFTESPS---VE---------DLTRFHSK--------SPI--SHISKVKTPTIFLLGAQDLRVPVSNGLQ 780 (826)
Q Consensus 723 ~~~~~~~~~~~~~~~~~---~~---------~~~~~~~~--------sp~--~~~~~i~~PvLii~G~~D~~vp~~~~~~ 780 (826)
...... ......... .. .+..+... .++ ..+.++ +|+||++|+.|..++..++++
T Consensus 155 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-pP~li~~G~~D~~~~~~~~~~ 231 (274)
T 2qru_A 155 IAAIDQ--TKPVWDDPFLSRYLLYHYSIQQALLPHFYGLPENGDWSAYALSDETLKTF-PPCFSTASSSDEEVPFRYSKK 231 (274)
T ss_dssp GTTSCC--SSCCSCCTTCTTHHHHHHHHHTTCHHHHHTCCTTSCCGGGCCCHHHHHTS-CCEEEEEETTCSSSCTHHHHH
T ss_pred Hhhhcc--cCCCCCCccccchhhhhhhhhhcchhhccCcccccccccCCCChhhhcCC-CCEEEEEecCCCCcCHHHHHH
Confidence 000000 000000000 00 00000000 001 123455 899999999999999888877
Q ss_pred HHHHHHhCCCCEEEEEeCCCCCCCCCCC---CHHHHHHHHHHHHHHH
Q 003363 781 YARALREKGVETKVIVFPNDVHGIERPQ---SDFESFLNIGLWFKKY 824 (826)
Q Consensus 781 ~~~~l~~~g~~~~~~~~p~~~H~~~~~~---~~~~~~~~i~~w~~~~ 824 (826)
+.+++. +++++++++++|++.... ...++.+.+.+||+++
T Consensus 232 l~~~~~----~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~fl~~~ 274 (274)
T 2qru_A 232 IGRTIP----ESTFKAVYYLEHDFLKQTKDPSVITLFEQLDSWLKER 274 (274)
T ss_dssp HHHHST----TCEEEEECSCCSCGGGGTTSHHHHHHHHHHHHHHHTC
T ss_pred HHHhCC----CcEEEEcCCCCcCCccCcCCHHHHHHHHHHHHHHhhC
Confidence 776654 479999999999985321 2235678899999764
|
| >2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-17 Score=177.38 Aligned_cols=245 Identities=13% Similarity=0.151 Sum_probs=153.3
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-----------cchHHHH---HHHHCCcEEEEECCCC--CCCC
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-----------SYSKSLA---FLSSVGYSLLIVNYRG--SLGF 635 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-----------~~~~~~~---~la~~G~~Vl~~d~rG--~~g~ 635 (826)
+|..++...+.+. .....|+||++||.+...... .|...+. .|.+.||.|+++|+|| .+..
T Consensus 29 ~g~~l~y~~~g~~---~~~~~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~vi~~D~~G~~~G~s 105 (366)
T 2pl5_A 29 SPVVIAYETYGTL---SSSKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGGCKGSS 105 (366)
T ss_dssp SSEEEEEEEEECC---CTTSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSSSSS
T ss_pred cCceeeEEeccCc---CCCCCceEEEecccCCcccccccccccccccchHHhhcCCcccccccccEEEEecCCCcccCCC
Confidence 3556666665543 223468899999977654310 3444442 3557899999999999 3433
Q ss_pred chhhhhcCCC---C----CCcchHHHHHHHHHHHHHcCCCCCCcE-EEEEecchHHHHHHHHHhCCCceeEEEecCCccc
Q 003363 636 GEEALQSLPG---K----VGSQDVNDVLTAIDHVIDMGLANPSKV-TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (826)
Q Consensus 636 G~~~~~~~~~---~----~~~~~~~D~~~~i~~l~~~~~~d~~rv-~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~ 707 (826)
+.... .+. . .....++++.+.+..+++. ++.+++ .|+|||+||.+++.++.++|++++++|+.+|...
T Consensus 106 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~dl~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 181 (366)
T 2pl5_A 106 GPLSI--HPETSTPYGSRFPFVSIQDMVKAQKLLVES--LGIEKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMASTAE 181 (366)
T ss_dssp STTSB--CTTTSSBCGGGSCCCCHHHHHHHHHHHHHH--TTCSSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSB
T ss_pred CCCCC--CCCCCccccCCCCcccHHHHHHHHHHHHHH--cCCceEEEEEEeCccHHHHHHHHHhCcHhhhheeEeccCcc
Confidence 22110 000 0 0123577777777777766 455788 8999999999999999999999999999998654
Q ss_pred hhhhc---------cCCCCCCc-----------------------------hhhhhccCcC-----------Cc------
Q 003363 708 LALMV---------GTTDIPDW-----------------------------CYVESYGSKG-----------KD------ 732 (826)
Q Consensus 708 ~~~~~---------~~~~~~~~-----------------------------~~~~~~~~~~-----------~~------ 732 (826)
..... .....+.| .....+.... ..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (366)
T 2pl5_A 182 HSAMQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYLIYQ 261 (366)
T ss_dssp CCHHHHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGGGST
T ss_pred CCCccchhhHHHHHHHHhCcccccccccccccccchHHHHHhhccccCCHHHHHHHhhhhhhcccccchhhhHHHHHHHH
Confidence 31100 00000000 0000000000 00
Q ss_pred --cCCCCCChhhH----HHHhhcCc------ccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEe-CC
Q 003363 733 --SFTESPSVEDL----TRFHSKSP------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF-PN 799 (826)
Q Consensus 733 --~~~~~~~~~~~----~~~~~~sp------~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~-p~ 799 (826)
.+......... ..+...+. ...+.++++|+|+++|++|..+|++.+.++.+.+...|..++++++ ++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (366)
T 2pl5_A 262 GESFVDRFDANSYIYVTKALDHYSLGKGKELTAALSNATCRFLVVSYSSDWLYPPAQSREIVKSLEAADKRVFYVELQSG 341 (366)
T ss_dssp TCCSSSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSCHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHhhhcccChhHHHHHHhhhhhhccccccchhhhhccCCCCEEEEecCCCcccCHHHHHHHHHHhhhcccCeEEEEeCCC
Confidence 00000111111 11112221 2267889999999999999999999999999999976667899999 89
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 800 DVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 800 ~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
+||....... .++.+.|.+||+++
T Consensus 342 ~gH~~~~e~p-~~~~~~i~~fl~~~ 365 (366)
T 2pl5_A 342 EGHDSFLLKN-PKQIEILKGFLENP 365 (366)
T ss_dssp BSSGGGGSCC-HHHHHHHHHHHHCC
T ss_pred CCcchhhcCh-hHHHHHHHHHHccC
Confidence 9998775554 48889999999864
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=196.93 Aligned_cols=272 Identities=14% Similarity=0.116 Sum_probs=174.8
Q ss_pred cccEEEEeCCCCCeEEEEec--CCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeec--CCCCe-EEEEeec
Q 003363 154 TGASAVVPSPSGSKLLVVRN--PENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWN--SDETL-IAYVAEE 228 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wS--PDg~~-ia~~~~~ 228 (826)
..+..|++||| +++|++. .+++...+|.+..++..++++.....+...++..+ -..+.|| |||++ |||.+..
T Consensus 24 ~~~~~~~~s~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~SPDg~~~la~~~~~ 100 (662)
T 3azo_A 24 GRPACVGAVGD--EVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYS-GFPWAGVPRPAGGPLLVFTHFG 100 (662)
T ss_dssp SCCEEEEEETT--EEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTC-CCCEEEECCSSSSCEEEEEBTT
T ss_pred CccceeEEcCC--eEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccC-CccceeeeecCCCeEEEEEECC
Confidence 35788999854 7888876 33344445554445555555443222211111100 0145566 99999 9997532
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEcc--C-CceEeccCCC---CCCccceEEE
Q 003363 229 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ--S-GEVQAVKGIP---KSLSVGQVVW 302 (826)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~--~-g~~~~l~~~~---~~~~~~~~~w 302 (826)
...||+++++ + ++.+.++..+ ....+..++|
T Consensus 101 -------------------------------------------~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~ 137 (662)
T 3azo_A 101 -------------------------------------------DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVL 137 (662)
T ss_dssp -------------------------------------------TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEE
T ss_pred -------------------------------------------CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEE
Confidence 2569999998 5 8888884222 3446778999
Q ss_pred eeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCC------CcceecC-CCCcccc
Q 003363 303 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED------LPVVNLT-ESISSAF 375 (826)
Q Consensus 303 SPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~------~~~~~Lt-~~~~~~~ 375 (826)
||||+. |+|++....... .......||++|+ ++ ++.++|+ .+.....
T Consensus 138 spDg~~----l~~~~~~~~~~~-----~~~~~~~i~~~~~-----------------~~~~~~~~~~~~~l~~~~~~~~~ 191 (662)
T 3azo_A 138 LPERGE----VWCMAEEFTGEG-----PSDVRRFLAAVPL-----------------DGSAAADRSAVRELSDDAHRFVT 191 (662)
T ss_dssp ETTTTE----EEEEEEEECSSS-----TTCEEEEEEEEET-----------------TSTTTTCGGGSEESSCSCSSEEC
T ss_pred CCCCCE----EEEEEecccCCC-----CCCceeEEEEEEC-----------------CCCccccCCceeEEEecCCCccc
Confidence 999999 999874311000 0012248999998 66 7788888 7767788
Q ss_pred CceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCC-CC---CCCCcccceeeeeeeeeccCCCCCcccccCCCCCCcc
Q 003363 376 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP-TN---GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 451 (826)
Q Consensus 376 ~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~-~~---~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~w 451 (826)
.|+|||||++|+|.+.+.. +......+||++|+. ++ ..+.++... ......+.|
T Consensus 192 ~~~~SpDG~~la~~~~~~~---~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~-------------------~~~~~~~~~ 249 (662)
T 3azo_A 192 GPRLSPDGRQAVWLAWDHP---RMPWEGTELKTARVTEDGRFADTRTLLGGP-------------------EEAIAQAEW 249 (662)
T ss_dssp CCEECTTSSEEEEEEECTT---CCTTTCEEEEEEEECTTSCEEEEEEEEEET-------------------TBCEEEEEE
T ss_pred CceECCCCCEEEEEECCCC---CCCCCCcEEEEEEECCCCcccccEEeCCCC-------------------CceEcceEE
Confidence 9999999999999986642 111234689999998 44 222221110 012346789
Q ss_pred ccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCe---------eeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003363 452 LSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNF---------SWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (826)
Q Consensus 452 s~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~---------~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 522 (826)
+|||+ ++|.+..++...||.+|+++++.++++...... ....+++++. +++.... .-.+|+.+++.+
T Consensus 250 spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~--~~~~l~~~d~~~ 325 (662)
T 3azo_A 250 APDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK--GAAVLGILDPES 325 (662)
T ss_dssp CTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS--SSCEEEEEETTT
T ss_pred CCCCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCE-EEEEEEc--CccEEEEEECCC
Confidence 99999 888877777779999999999999998754432 1234445554 6666665 556788888654
Q ss_pred c
Q 003363 523 K 523 (826)
Q Consensus 523 ~ 523 (826)
+
T Consensus 326 ~ 326 (662)
T 3azo_A 326 G 326 (662)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=177.62 Aligned_cols=210 Identities=16% Similarity=0.176 Sum_probs=138.5
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.|+||++||++.. ...|...+..|++ ||.|+++|+||.+... .......++++.+.+..+++. ++.+
T Consensus 68 ~p~vv~lhG~~~~--~~~~~~~~~~L~~-~~~v~~~D~~G~G~S~--------~~~~~~~~~~~~~dl~~~l~~--l~~~ 134 (314)
T 3kxp_A 68 GPLMLFFHGITSN--SAVFEPLMIRLSD-RFTTIAVDQRGHGLSD--------KPETGYEANDYADDIAGLIRT--LARG 134 (314)
T ss_dssp SSEEEEECCTTCC--GGGGHHHHHTTTT-TSEEEEECCTTSTTSC--------CCSSCCSHHHHHHHHHHHHHH--HTSS
T ss_pred CCEEEEECCCCCC--HHHHHHHHHHHHc-CCeEEEEeCCCcCCCC--------CCCCCCCHHHHHHHHHHHHHH--hCCC
Confidence 5799999997755 4567777888876 6999999999954432 122233566666666666665 2347
Q ss_pred cEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhc--------cCC--CCCCchhhhhccCcCCccCCCCCChh
Q 003363 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV--------GTT--DIPDWCYVESYGSKGKDSFTESPSVE 741 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (826)
+++|+|||+||.+++.++.++|++++++|+.+|........ ... ....+.....+.. ..+... ..+
T Consensus 135 ~v~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~ 210 (314)
T 3kxp_A 135 HAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTPYIETEALDALEARVNAGSQLFEDIKAVEAYLA---GRYPNI-PAD 210 (314)
T ss_dssp CEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCTTCCHHHHHHHHHHTTTTCSCBSSHHHHHHHHH---HHSTTS-CHH
T ss_pred CcEEEEECchHHHHHHHHHhChhheeEEEEeCCCCCCCcchhhHHHHHhhhchhhhcCHHHHHHHHH---hhcccC-chH
Confidence 89999999999999999999999999999998764321110 000 0000000000000 000000 001
Q ss_pred hHHHH---------------------------hhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEE
Q 003363 742 DLTRF---------------------------HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 794 (826)
Q Consensus 742 ~~~~~---------------------------~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 794 (826)
....+ ...+....+.++++|+|+++|++|..+|++.+.++.+.++. +++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~~~~~~~~~~~~~~~~~----~~~ 286 (314)
T 3kxp_A 211 AIRIRAESGYQPVDGGLRPLASSAAMAQTARGLRSDLVPAYRDVTKPVLIVRGESSKLVSAAALAKTSRLRPD----LPV 286 (314)
T ss_dssp HHHHHHHHSEEEETTEEEESSCHHHHHHHHHHTTSCCHHHHHHCCSCEEEEEETTCSSSCHHHHHHHHHHCTT----SCE
T ss_pred HHHHHhhhhhcccccccccccChhhhhhhccccCcchhhHhhcCCCCEEEEecCCCccCCHHHHHHHHHhCCC----ceE
Confidence 11111 01134445677899999999999999999999888887754 688
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 795 IVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 795 ~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+++|++||.+.... ..++.+.+.+||++
T Consensus 287 ~~~~g~gH~~~~e~-~~~~~~~i~~fl~~ 314 (314)
T 3kxp_A 287 VVVPGADHYVNEVS-PEITLKAITNFIDA 314 (314)
T ss_dssp EEETTCCSCHHHHC-HHHHHHHHHHHHHC
T ss_pred EEcCCCCCcchhhC-HHHHHHHHHHHHhC
Confidence 99999999875333 44788889999864
|
| >3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.5e-18 Score=175.92 Aligned_cols=219 Identities=16% Similarity=0.208 Sum_probs=141.8
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (826)
...|+||++||.+.. ...|...+..|++ +|.|+++|+||. |.+... ......++++.+.+..+++. ++
T Consensus 13 ~~~~~vvllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G~---G~S~~~----~~~~~~~~~~a~dl~~~l~~--l~ 80 (268)
T 3v48_A 13 ADAPVVVLISGLGGS--GSYWLPQLAVLEQ-EYQVVCYDQRGT---GNNPDT----LAEDYSIAQMAAELHQALVA--AG 80 (268)
T ss_dssp TTCCEEEEECCTTCC--GGGGHHHHHHHHT-TSEEEECCCTTB---TTBCCC----CCTTCCHHHHHHHHHHHHHH--TT
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHHHhh-cCeEEEECCCCC---CCCCCC----ccccCCHHHHHHHHHHHHHH--cC
Confidence 346889999997655 5678888888865 699999999994 443211 11223566777666666665 34
Q ss_pred CCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhcc-----------CC-------------CCCCchhh--
Q 003363 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-----------TT-------------DIPDWCYV-- 723 (826)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~-----------~~-------------~~~~~~~~-- 723 (826)
.+++.|+||||||.+++.++.++|++++++|+.++......... .. ....|...
T Consensus 81 ~~~~~lvGhS~GG~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (268)
T 3v48_A 81 IEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARA 160 (268)
T ss_dssp CCSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTTH
T ss_pred CCCeEEEEecHHHHHHHHHHHhChhhceEEEEeccccccchhhhHHHHHHHHHHhccchhhhhhhhhhhcCchhhhhccc
Confidence 57899999999999999999999999999999887532210000 00 00000000
Q ss_pred hhccCcCCccCCCCCChhh----HHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 003363 724 ESYGSKGKDSFTESPSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 799 (826)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~----~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~ 799 (826)
................... ...+...+....+.++++|+|+++|++|..+|+..++.+.+.+.. .+++++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~l~~~~p~----~~~~~~~~ 236 (268)
T 3v48_A 161 PRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPD----SQKMVMPY 236 (268)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCBCTTTGGGCCSCEEEEEETTCSSSCTHHHHHHHHHCSS----EEEEEESS
T ss_pred ccchhhHHHHHhhcCchhHHHHHHHHHhccchhhhhhcCCCCeEEEEeCCCcccCHHHHHHHHHhCCc----CeEEEeCC
Confidence 0000000000000000000 111122333455778999999999999999999999888887764 78999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 800 DVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 800 ~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
+||..... ....+...|.+|+.+.+
T Consensus 237 ~GH~~~~e-~p~~~~~~i~~fl~~~~ 261 (268)
T 3v48_A 237 GGHACNVT-DPETFNALLLNGLASLL 261 (268)
T ss_dssp CCTTHHHH-CHHHHHHHHHHHHHHHH
T ss_pred CCcchhhc-CHHHHHHHHHHHHHHhc
Confidence 99976544 34478889999998753
|
| >3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-17 Score=172.58 Aligned_cols=212 Identities=20% Similarity=0.281 Sum_probs=131.0
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.|.||++||.+.. ...|...+..|+++||.|+++|+||. |.+.. .......+++.+.+..+++. ++.+
T Consensus 27 g~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G~---G~S~~-----~~~~~~~~~~a~dl~~ll~~--l~~~ 94 (281)
T 3fob_A 27 GKPVVLIHGWPLS--GRSWEYQVPALVEAGYRVITYDRRGF---GKSSQ-----PWEGYEYDTFTSDLHQLLEQ--LELQ 94 (281)
T ss_dssp SEEEEEECCTTCC--GGGGTTTHHHHHHTTEEEEEECCTTS---TTSCC-----CSSCCSHHHHHHHHHHHHHH--TTCC
T ss_pred CCeEEEECCCCCc--HHHHHHHHHHHHhCCCEEEEeCCCCC---CCCCC-----CccccCHHHHHHHHHHHHHH--cCCC
Confidence 3678999998765 45677788899999999999999994 44321 11223455655555556555 3457
Q ss_pred cEEEEEecchHHHHHHHHHh-CCCceeEEEecCCccchhhhc-cCCC-CCCch---------------hhhh----ccCc
Q 003363 672 KVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMV-GTTD-IPDWC---------------YVES----YGSK 729 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~p~~~~~~~~-~~~~-~~~~~---------------~~~~----~~~~ 729 (826)
++.|+||||||.+++.+++. +|++++++|+.++........ .... ..... +... +...
T Consensus 95 ~~~lvGhS~GG~i~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (281)
T 3fob_A 95 NVTLVGFSMGGGEVARYISTYGTDRIEKVVFAGAVPPYLYKSEDHPEGALDDATIETFKSGVINDRLAFLDEFTKGFFAA 174 (281)
T ss_dssp SEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSSTTCSBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCB
T ss_pred cEEEEEECccHHHHHHHHHHccccceeEEEEecCCCcchhccccccccccchhHHHHHHHHhhhhHHHHHHHHHHHhccc
Confidence 89999999999887776655 589999999887642110000 0000 00000 0000 0000
Q ss_pred CCccCCCCCChhh-------------------HHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHH-HHHHHHHHhCC
Q 003363 730 GKDSFTESPSVED-------------------LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNG-LQYARALREKG 789 (826)
Q Consensus 730 ~~~~~~~~~~~~~-------------------~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~-~~~~~~l~~~g 789 (826)
.. ......... ...+...+....+.++++|+|+++|++|..+|++.+ ..+.+.+.
T Consensus 175 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~~~~~~~p--- 249 (281)
T 3fob_A 175 GD--RTDLVSESFRLYNWDIAAGASPKGTLDCITAFSKTDFRKDLEKFNIPTLIIHGDSDATVPFEYSGKLTHEAIP--- 249 (281)
T ss_dssp TT--BCCSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCHHHHTTCCSCEEEEEETTCSSSCGGGTHHHHHHHST---
T ss_pred cc--ccccchHHHHHHhhhhhcccChHHHHHHHHHccccchhhhhhhcCCCEEEEecCCCCCcCHHHHHHHHHHhCC---
Confidence 00 000000000 011112233455788999999999999999999876 44444444
Q ss_pred CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 790 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 790 ~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
+.++++++++||...... ..++.+.+.+||+
T Consensus 250 -~~~~~~i~~~gH~~~~e~-p~~~~~~i~~Fl~ 280 (281)
T 3fob_A 250 -NSKVALIKGGPHGLNATH-AKEFNEALLLFLK 280 (281)
T ss_dssp -TCEEEEETTCCTTHHHHT-HHHHHHHHHHHHC
T ss_pred -CceEEEeCCCCCchhhhh-HHHHHHHHHHHhh
Confidence 379999999999875433 4478888888885
|
| >1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=173.40 Aligned_cols=213 Identities=18% Similarity=0.259 Sum_probs=133.6
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCc
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 672 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 672 (826)
|.||++||.+.. ...|...+..|+++||.|+++|+||. |.+... .....++++.+.+..+++. ++.++
T Consensus 24 ~pvvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G~---G~S~~~-----~~~~~~~~~a~dl~~~l~~--l~~~~ 91 (277)
T 1brt_A 24 QPVVLIHGFPLS--GHSWERQSAALLDAGYRVITYDRRGF---GQSSQP-----TTGYDYDTFAADLNTVLET--LDLQD 91 (277)
T ss_dssp SEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTS---TTSCCC-----SSCCSHHHHHHHHHHHHHH--HTCCS
T ss_pred CeEEEECCCCCc--HHHHHHHHHHHhhCCCEEEEeCCCCC---CCCCCC-----CCCccHHHHHHHHHHHHHH--hCCCc
Confidence 459999997754 56788889999999999999999994 443211 1123344444444444443 23478
Q ss_pred EEEEEecchHHHHHHHHHhCCC-ceeEEEecCCccchhhhccC-CC--CC-Cch-------------hhhhccCcCCcc-
Q 003363 673 VTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPLCNLALMVGT-TD--IP-DWC-------------YVESYGSKGKDS- 733 (826)
Q Consensus 673 v~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~p~~~~~~~~~~-~~--~~-~~~-------------~~~~~~~~~~~~- 733 (826)
+.|+||||||.+++.++.++|+ +++++|+.+|.......... .. .+ ... ....+.......
T Consensus 92 ~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (277)
T 1brt_A 92 AVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLD 171 (277)
T ss_dssp EEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHTTHH
T ss_pred eEEEEECccHHHHHHHHHHcCcceEEEEEEecCcCccccccccCccccccHHHHHHHHHHHhcCchhhHHHHHHHHhhcc
Confidence 9999999999999999999999 99999999874321100000 00 00 000 000000000000
Q ss_pred --CCCCCChhhHHHHh------------------hcCcccccCCCCCcEEEEEeCCCCCCCcHHH-HHHHHHHHhCCCCE
Q 003363 734 --FTESPSVEDLTRFH------------------SKSPISHISKVKTPTIFLLGAQDLRVPVSNG-LQYARALREKGVET 792 (826)
Q Consensus 734 --~~~~~~~~~~~~~~------------------~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~-~~~~~~l~~~g~~~ 792 (826)
.......+..+.+. ..+....+.++++|+|+++|++|..+|++.+ ..+.+.+.. .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~----~ 247 (277)
T 1brt_A 172 ENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLPIENTARVFHKALPS----A 247 (277)
T ss_dssp HHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGGGCCSCEEEEEETTCSSSCGGGTHHHHHHHCTT----S
T ss_pred ccccccCCHHHHHHHHHHHhccchHHHHHHHHHHhccchhhcccCCCCeEEEecCCCccCChHHHHHHHHHHCCC----C
Confidence 00001111111110 1122335678899999999999999999887 777777653 6
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 793 KVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 793 ~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
++++++++||..... ...++.+.|.+||+
T Consensus 248 ~~~~i~~~gH~~~~e-~p~~~~~~i~~fl~ 276 (277)
T 1brt_A 248 EYVEVEGAPHGLLWT-HAEEVNTALLAFLA 276 (277)
T ss_dssp EEEEETTCCTTHHHH-THHHHHHHHHHHHH
T ss_pred cEEEeCCCCcchhhh-CHHHHHHHHHHHHh
Confidence 899999999986543 34578888999986
|
| >1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.75 E-value=8e-17 Score=167.55 Aligned_cols=231 Identities=15% Similarity=0.180 Sum_probs=137.8
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCc
Q 003363 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~ 649 (826)
..+|..++...+.|+ +.|.||++||.+.. ...|...+..|+++||.|+++|+||.|. +... ...
T Consensus 5 ~~~g~~l~y~~~g~~------~~~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G~G~---S~~~-----~~~ 68 (275)
T 1a88_A 5 TSDGTNIFYKDWGPR------DGLPVVFHHGWPLS--ADDWDNQMLFFLSHGYRVIAHDRRGHGR---SDQP-----STG 68 (275)
T ss_dssp CTTSCEEEEEEESCT------TSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTT---SCCC-----SSC
T ss_pred ccCCCEEEEEEcCCC------CCceEEEECCCCCc--hhhHHHHHHHHHHCCceEEEEcCCcCCC---CCCC-----CCC
Confidence 345667765555332 23679999997654 5578888899999999999999999544 3211 112
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhC-CCceeEEEecCCccchhhhccC-C-CCCCchh----
Q 003363 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALMVGT-T-DIPDWCY---- 722 (826)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~p~~~~~~~~~~-~-~~~~~~~---- 722 (826)
..++++.+.+..+++. ++.+++.|+||||||.+++.+++++ |++++++|+.++.......... . ..+....
T Consensus 69 ~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (275)
T 1a88_A 69 HDMDTYAADVAALTEA--LDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTNPDGLPLEVFDEFR 146 (275)
T ss_dssp CSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBCBTTBTTSBCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--cCCCceEEEEeccchHHHHHHHHHhCchheEEEEEecCCCcccccCccCcccCCHHHHHHHH
Confidence 2344444444444443 2346899999999999999877776 9999999998864321000000 0 0000000
Q ss_pred ----------hhhccC-c--CCccCCCCCChhhHHH-------------------HhhcCcccccCCCCCcEEEEEeCCC
Q 003363 723 ----------VESYGS-K--GKDSFTESPSVEDLTR-------------------FHSKSPISHISKVKTPTIFLLGAQD 770 (826)
Q Consensus 723 ----------~~~~~~-~--~~~~~~~~~~~~~~~~-------------------~~~~sp~~~~~~i~~PvLii~G~~D 770 (826)
...+.. . ...........+.... +...+....+.++++|+|+++|++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D 226 (275)
T 1a88_A 147 AALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDDLKRIDVPVLVAHGTDD 226 (275)
T ss_dssp HHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSCEEEEEETTC
T ss_pred HHHhhhHHHHHHhhhccccccccCcccccCHHHHHHHHHHhhhcchHhHHHHHhhhhhcccccccccCCCCEEEEecCCC
Confidence 000000 0 0000000011111111 1112223345678999999999999
Q ss_pred CCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 771 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 771 ~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
..+|+....+.+..+. .++++++++++||.+... ...++.+.+.+||+
T Consensus 227 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~gH~~~~e-~p~~~~~~i~~fl~ 274 (275)
T 1a88_A 227 QVVPYADAAPKSAELL---ANATLKSYEGLPHGMLST-HPEVLNPDLLAFVK 274 (275)
T ss_dssp SSSCSTTTHHHHHHHS---TTEEEEEETTCCTTHHHH-CHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHhhC---CCcEEEEcCCCCccHHHh-CHHHHHHHHHHHhh
Confidence 9999875444333332 248999999999987543 44578888999986
|
| >3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=172.44 Aligned_cols=221 Identities=14% Similarity=0.096 Sum_probs=139.8
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCC
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (826)
....|+||++||.+.. ...|...+..|+++||.|+++|+||.+.+.... .....+++..+.+..+++.- -
T Consensus 9 ~~~~~~vvllHG~~~~--~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~-------~~~~~~~~~~~~~~~~l~~l-~ 78 (267)
T 3sty_A 9 PFVKKHFVLVHAAFHG--AWCWYKIVALMRSSGHNVTALDLGASGINPKQA-------LQIPNFSDYLSPLMEFMASL-P 78 (267)
T ss_dssp -CCCCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTCSCCG-------GGCCSHHHHHHHHHHHHHTS-C
T ss_pred CCCCCeEEEECCCCCC--cchHHHHHHHHHhcCCeEEEeccccCCCCCCcC-------CccCCHHHHHHHHHHHHHhc-C
Confidence 4567899999997755 567888999999999999999999954432211 11134566666555555552 1
Q ss_pred CCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh-----ccCC--CCCCchhhhhc-cC--cC--------
Q 003363 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-----VGTT--DIPDWCYVESY-GS--KG-------- 730 (826)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~-----~~~~--~~~~~~~~~~~-~~--~~-------- 730 (826)
+.+++.|+|||+||.+++.++.++|++++++|+.++....... .... ....|...... .. ..
T Consensus 79 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (267)
T 3sty_A 79 ANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNIDATTVCTKAGSAVLGQLDNCVTYENGPTNPPTTLIAG 158 (267)
T ss_dssp TTSCEEEEEETTHHHHHHHHHHHSGGGEEEEEEESCCCCBTTBCHHHHHHHHHHTTTTCTTCEEECTTCTTSCCCEEECC
T ss_pred CCCCEEEEEEcHHHHHHHHHHHhChhhcceEEEecCCCCCCcchHHHHHHHhcccchhhhhhhhhhhhhhhcccchhhhh
Confidence 4689999999999999999999999999999998875432110 0000 00111000000 00 00
Q ss_pred ----CccCCCCCChhhHHH---------------HhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCC
Q 003363 731 ----KDSFTESPSVEDLTR---------------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVE 791 (826)
Q Consensus 731 ----~~~~~~~~~~~~~~~---------------~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~ 791 (826)
...+......+.... +............++|+|+++|++|..+|++....+.+.+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~---- 234 (267)
T 3sty_A 159 PKFLATNVYHLSPIEDLALATALVRPLYLYLAEDISKEVVLSSKRYGSVKRVFIVATENDALKKEFLKLMIEKNPP---- 234 (267)
T ss_dssp HHHHHHHTSTTSCHHHHHHHHHHCCCEECCCHHHHHHHCCCCTTTGGGSCEEEEECCCSCHHHHHHHHHHHHHSCC----
T ss_pred HHHHHHhhcccCCHHHHHHHHHhhccchhHHHHHhhcchhcccccccCCCEEEEEeCCCCccCHHHHHHHHHhCCC----
Confidence 000011111111111 111112222222358999999999999999988888877754
Q ss_pred EEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 792 TKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 792 ~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
++++++|++||..... ...++...+.+|++++
T Consensus 235 ~~~~~i~~~gH~~~~e-~p~~~~~~i~~fl~~~ 266 (267)
T 3sty_A 235 DEVKEIEGSDHVTMMS-KPQQLFTTLLSIANKY 266 (267)
T ss_dssp SEEEECTTCCSCHHHH-SHHHHHHHHHHHHHHC
T ss_pred ceEEEeCCCCcccccc-ChHHHHHHHHHHHHhc
Confidence 6899999999986543 3457888999999874
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-17 Score=170.01 Aligned_cols=216 Identities=17% Similarity=0.245 Sum_probs=135.5
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcch-HHHHHHHHHHHHHcCCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD-VNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~-~~D~~~~i~~l~~~~~~d~ 670 (826)
.|.||++||.+.. ...|...+..|+++||.|+++|+||.| .+..... .+.... .+|+.++++++.+.+ .
T Consensus 16 ~~~vvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~GhG---~s~~~~~--~~~~~~~~~d~~~~~~~l~~~~---~ 85 (247)
T 1tqh_A 16 ERAVLLLHGFTGN--SADVRMLGRFLESKGYTCHAPIYKGHG---VPPEELV--HTGPDDWWQDVMNGYEFLKNKG---Y 85 (247)
T ss_dssp SCEEEEECCTTCC--THHHHHHHHHHHHTTCEEEECCCTTSS---SCHHHHT--TCCHHHHHHHHHHHHHHHHHHT---C
T ss_pred CcEEEEECCCCCC--hHHHHHHHHHHHHCCCEEEecccCCCC---CCHHHhc--CCCHHHHHHHHHHHHHHHHHcC---C
Confidence 3679999997654 456777888999999999999999954 3221111 111111 456666667766553 3
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchh---hhccCCCCCCc--hhhhhccC------cCCccCCCCC-
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA---LMVGTTDIPDW--CYVESYGS------KGKDSFTESP- 738 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~---~~~~~~~~~~~--~~~~~~~~------~~~~~~~~~~- 738 (826)
+++.|+||||||.+++.++.++| ++++|+.++..... ..... ...+ .+...... .....+...+
T Consensus 86 ~~~~lvG~SmGG~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (247)
T 1tqh_A 86 EKIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCAPMYIKSEETMYEG--VLEYAREYKKREGKSEEQIEQEMEKFKQTPM 161 (247)
T ss_dssp CCEEEEEETHHHHHHHHHHTTSC--CSCEEEESCCSSCCCHHHHHHH--HHHHHHHHHHHHTCCHHHHHHHHHHHTTSCC
T ss_pred CeEEEEEeCHHHHHHHHHHHhCC--CCeEEEEcceeecCcchhhhHH--HHHHHHHhhcccccchHHHHhhhhcccCCCH
Confidence 68999999999999999999998 77777654322100 00000 0000 00000000 0000000000
Q ss_pred -ChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHH
Q 003363 739 -SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNI 817 (826)
Q Consensus 739 -~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i 817 (826)
.......+. .+....+.++++|+|+++|++|..+|++.++.+++.++. ..++++++|++||.....+...++.+.+
T Consensus 162 ~~~~~~~~~~-~~~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~e~~~~~~~~~i 238 (247)
T 1tqh_A 162 KTLKALQELI-ADVRDHLDLIYAPTFVVQARHDEMINPDSANIIYNEIES--PVKQIKWYEQSGHVITLDQEKDQLHEDI 238 (247)
T ss_dssp TTHHHHHHHH-HHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHCCC--SSEEEEEETTCCSSGGGSTTHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHhhcccCCCCEEEEecCCCCCCCcchHHHHHHhcCC--CceEEEEeCCCceeeccCccHHHHHHHH
Confidence 011111110 122345778999999999999999999999888887753 2479999999999877655556888999
Q ss_pred HHHHHHH
Q 003363 818 GLWFKKY 824 (826)
Q Consensus 818 ~~w~~~~ 824 (826)
.+||++.
T Consensus 239 ~~Fl~~~ 245 (247)
T 1tqh_A 239 YAFLESL 245 (247)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 9999863
|
| >1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.75 E-value=8e-17 Score=167.34 Aligned_cols=215 Identities=19% Similarity=0.292 Sum_probs=130.7
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.|.||++||.+.. ...|...+..|+++||.|+++|+||.| .+.. + .....++++.+.+..+++. ++.+
T Consensus 19 ~~~vvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G~G---~S~~---~--~~~~~~~~~~~dl~~~l~~--l~~~ 86 (273)
T 1a8s_A 19 GQPIVFSHGWPLN--ADSWESQMIFLAAQGYRVIAHDRRGHG---RSSQ---P--WSGNDMDTYADDLAQLIEH--LDLR 86 (273)
T ss_dssp SSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTST---TSCC---C--SSCCSHHHHHHHHHHHHHH--TTCC
T ss_pred CCEEEEECCCCCc--HHHHhhHHhhHhhCCcEEEEECCCCCC---CCCC---C--CCCCCHHHHHHHHHHHHHH--hCCC
Confidence 3679999997654 557888889999999999999999954 4321 1 1123455555555555554 3457
Q ss_pred cEEEEEecchHHHHHHHHHhC-CCceeEEEecCCccchhhhccC-CC-CCCchh--------------hhhccC-c--CC
Q 003363 672 KVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALMVGT-TD-IPDWCY--------------VESYGS-K--GK 731 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~p~~~~~~~~~~-~~-~~~~~~--------------~~~~~~-~--~~ 731 (826)
++.|+||||||.+++.+++++ |++++++|+.++.......... .. .+.... ...+.. . ..
T Consensus 87 ~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (273)
T 1a8s_A 87 DAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEANPGGLPMEVFDGIRQASLADRSQLYKDLASGPFFGF 166 (273)
T ss_dssp SEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSSST
T ss_pred CeEEEEeChHHHHHHHHHHhcCchheeEEEEEcccCcccccCccccccCcHHHHHHHHHHhHhhHHHHHHHhhcccccCc
Confidence 899999999999999877765 9999999998864211000000 00 000000 000000 0 00
Q ss_pred ccCCCCCChhhHHH-------------------HhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCE
Q 003363 732 DSFTESPSVEDLTR-------------------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVET 792 (826)
Q Consensus 732 ~~~~~~~~~~~~~~-------------------~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~ 792 (826)
.........+.... +...+....+.++++|+|+++|++|..+|++...+....+. .+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~---~~~ 243 (273)
T 1a8s_A 167 NQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKKIDVPTLVVHGDADQVVPIEASGIASAALV---KGS 243 (273)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHTCCSCEEEEEETTCSSSCSTTTHHHHHHHS---TTC
T ss_pred CCcccccCHHHHHHHHHhccccchhHHHHHHHHHhccChhhhhhcCCCCEEEEECCCCccCChHHHHHHHHHhC---CCc
Confidence 00000011111110 11122334567899999999999999999885444433332 247
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 793 KVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 793 ~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
++++++++||.+... ...++.+.+.+||+
T Consensus 244 ~~~~~~~~gH~~~~e-~p~~~~~~i~~fl~ 272 (273)
T 1a8s_A 244 TLKIYSGAPHGLTDT-HKDQLNADLLAFIK 272 (273)
T ss_dssp EEEEETTCCSCHHHH-THHHHHHHHHHHHH
T ss_pred EEEEeCCCCCcchhh-CHHHHHHHHHHHHh
Confidence 899999999987543 44578888999986
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.75 E-value=8.8e-18 Score=195.15 Aligned_cols=234 Identities=17% Similarity=0.104 Sum_probs=160.2
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~ 235 (826)
+...++||||++|||++..+ +..++|.+ ++++.++++.... +.+ ..++|||| +|+|.+....
T Consensus 24 ~~~~~~~~DG~~la~~s~~~-g~~~lw~~-~~g~~~~lt~~~~---~~~------~~~~~spd--~~l~~~~~~~----- 85 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFSE-GSVNAYLY-DGGETVKLNREPI---NSV------LDPHYGVG--RVILVRDVSK----- 85 (582)
T ss_dssp EEEEEEEETTTEEEEEEEET-TEEEEEEE-ETTEEEECCSSCC---SEE------CEECTTCS--EEEEEEECST-----
T ss_pred hheeecCCCCCeEEEEEccC-CceeEEEE-cCCCcEeeecccc---ccc------ccccCCCC--eEEEEeccCC-----
Confidence 78889999999999998754 44556655 5666666654331 122 78999999 6888765410
Q ss_pred ccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEc--cCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003363 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI--NSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~--~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (826)
| .....||++++ +++.. .++ ... .....+|||||+. +
T Consensus 86 ----------------------------g-----~~~~~l~~~~~~~~g~~~-~l~--~~~-~~~~~~~s~dg~~----~ 124 (582)
T 3o4h_A 86 ----------------------------G-----AEQHALFKVNTSRPGEEQ-RLE--AVK-PMRILSGVDTGEA----V 124 (582)
T ss_dssp ----------------------------T-----SCCEEEEEEETTSTTCCE-ECT--TSC-SBEEEEEEECSSC----E
T ss_pred ----------------------------C-----CcceEEEEEeccCCCccc-ccc--CCC-CceeeeeCCCCCe----E
Confidence 0 02357999998 65554 552 222 2336799999999 9
Q ss_pred EEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccC
Q 003363 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (826)
Q Consensus 314 vf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~ 393 (826)
+|++...+ .+.++|+ ++++.++++.... .++.|||||++|+|.+.+.
T Consensus 125 ~~~s~~~~--------------~~~l~d~-----------------~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~ 171 (582)
T 3o4h_A 125 VFTGATED--------------RVALYAL-----------------DGGGLRELARLPG--FGFVSDIRGDLIAGLGFFG 171 (582)
T ss_dssp EEEEECSS--------------CEEEEEE-----------------ETTEEEEEEEESS--CEEEEEEETTEEEEEEEEE
T ss_pred EEEecCCC--------------CceEEEc-----------------cCCcEEEeecCCC--ceEEECCCCCEEEEEEEcC
Confidence 99873322 3446687 6778888876544 7899999999999998764
Q ss_pred CCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003363 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (826)
Q Consensus 394 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~v 473 (826)
.+...||++|+.+++.+.++.... ....++|||||+.|+ .+...+...||++
T Consensus 172 -------~~~~~i~~~d~~~g~~~~l~~~~~--------------------~~~~~~~SpDG~~l~-~~~~~~~~~i~~~ 223 (582)
T 3o4h_A 172 -------GGRVSLFTSNLSSGGLRVFDSGEG--------------------SFSSASISPGMKVTA-GLETAREARLVTV 223 (582)
T ss_dssp -------TTEEEEEEEETTTCCCEEECCSSC--------------------EEEEEEECTTSCEEE-EEECSSCEEEEEE
T ss_pred -------CCCeEEEEEcCCCCCceEeecCCC--------------------ccccceECCCCCEEE-EccCCCeeEEEEE
Confidence 123569999999877655443221 123678999999887 5555666799999
Q ss_pred ECCCCcEEEecCCCCCeeeEE--------EeecCCEEEEEEeCCC
Q 003363 474 NVSSGELLRITPAESNFSWSL--------LTLDGDNIIAVSSSPV 510 (826)
Q Consensus 474 dl~tg~~~~lt~~~~~~~~~~--------~s~dg~~l~~~~s~~~ 510 (826)
|+++|+.+.++.....+.... |++|| .+++..+...
T Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g 267 (582)
T 3o4h_A 224 DPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREG 267 (582)
T ss_dssp CTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETT
T ss_pred cCCCCcEEEccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCC
Confidence 999999883333333233334 89999 6776665443
|
| >4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=165.21 Aligned_cols=187 Identities=13% Similarity=0.073 Sum_probs=120.0
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHC--CcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~--G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (826)
.|+|||+||...+..........+++.++ +|.|+++|++| +|.+ ..+.++.+++. .+
T Consensus 2 mptIl~lHGf~ss~~s~k~~~l~~~~~~~~~~~~v~~pdl~~---~g~~----------------~~~~l~~~~~~--~~ 60 (202)
T 4fle_A 2 MSTLLYIHGFNSSPSSAKATTFKSWLQQHHPHIEMQIPQLPP---YPAE----------------AAEMLESIVMD--KA 60 (202)
T ss_dssp -CEEEEECCTTCCTTCHHHHHHHHHHHHHCTTSEEECCCCCS---SHHH----------------HHHHHHHHHHH--HT
T ss_pred CcEEEEeCCCCCCCCccHHHHHHHHHHHcCCCcEEEEeCCCC---CHHH----------------HHHHHHHHHHh--cC
Confidence 38999999954432222223345667665 49999999998 4432 23333444443 34
Q ss_pred CCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhc
Q 003363 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK 749 (826)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (826)
.++|+|+|+||||++|+.++.++|+....++...+..+.......... .+. . ...+. ....... ...
T Consensus 61 ~~~i~l~G~SmGG~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~---~~~~~--~~~~~~~--~~~ 127 (202)
T 4fle_A 61 GQSIGIVGSSLGGYFATWLSQRFSIPAVVVNPAVRPFELLSDYLGENQ-NPY-----T---GQKYV--LESRHIY--DLK 127 (202)
T ss_dssp TSCEEEEEETHHHHHHHHHHHHTTCCEEEESCCSSHHHHGGGGCEEEE-CTT-----T---CCEEE--ECHHHHH--HHH
T ss_pred CCcEEEEEEChhhHHHHHHHHHhcccchheeeccchHHHHHHhhhhhc-ccc-----c---ccccc--chHHHHH--HHH
Confidence 579999999999999999999999888777766654433211100000 000 0 00000 0111111 122
Q ss_pred CcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 750 SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 750 sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
.....+.++++|+|++||++|.+||++++.++++ ++++++++|++|.+... .++++.|.+||+
T Consensus 128 ~~~~~~~~~~~P~LiihG~~D~~Vp~~~s~~l~~-------~~~l~i~~g~~H~~~~~---~~~~~~I~~FL~ 190 (202)
T 4fle_A 128 AMQIEKLESPDLLWLLQQTGDEVLDYRQAVAYYT-------PCRQTVESGGNHAFVGF---DHYFSPIVTFLG 190 (202)
T ss_dssp TTCCSSCSCGGGEEEEEETTCSSSCHHHHHHHTT-------TSEEEEESSCCTTCTTG---GGGHHHHHHHHT
T ss_pred hhhhhhhccCceEEEEEeCCCCCCCHHHHHHHhh-------CCEEEEECCCCcCCCCH---HHHHHHHHHHHh
Confidence 3445567888999999999999999999987763 36899999999987543 256788999986
|
| >1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.9e-17 Score=169.36 Aligned_cols=229 Identities=16% Similarity=0.171 Sum_probs=137.2
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcc
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~ 650 (826)
.+|..++...+.|+ ..|.||++||.+.. ...|...+..|+++||.|+++|+||.|. +... ....
T Consensus 7 ~~g~~l~y~~~g~~------~~~~vvllHG~~~~--~~~w~~~~~~L~~~g~~vi~~D~~G~G~---S~~~-----~~~~ 70 (276)
T 1zoi_A 7 KDGVQIFYKDWGPR------DAPVIHFHHGWPLS--ADDWDAQLLFFLAHGYRVVAHDRRGHGR---SSQV-----WDGH 70 (276)
T ss_dssp TTSCEEEEEEESCT------TSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTT---SCCC-----SSCC
T ss_pred CCCcEEEEEecCCC------CCCeEEEECCCCcc--hhHHHHHHHHHHhCCCEEEEecCCCCCC---CCCC-----CCCC
Confidence 35667765555432 23679999997654 5578888899999999999999999544 3211 1122
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhC-CCceeEEEecCCccchhhhccCC--CCCCch------
Q 003363 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALMVGTT--DIPDWC------ 721 (826)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~p~~~~~~~~~~~--~~~~~~------ 721 (826)
.++++.+.+..+++. ++.+++.|+||||||.+++.+++++ |++++++|+.++........... ..+...
T Consensus 71 ~~~~~~~d~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (276)
T 1zoi_A 71 DMDHYADDVAAVVAH--LGIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAVPPLMVQTPGNPGGLPKSVFDGFQA 148 (276)
T ss_dssp SHHHHHHHHHHHHHH--HTCTTCEEEEETHHHHHHHHHHHHCTTSCCCCEEEESCCCSCCBCCSSCTTSBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH--hCCCceEEEEECccHHHHHHHHHHhCHHheeeeEEecCCCccccccccccccccHHHHHHHHH
Confidence 344444444444443 2346899999999999999988777 99999999988643210000000 000000
Q ss_pred --------hhhhccC-cC--CccCCCCCChhhHHH-------------------HhhcCcccccCCCCCcEEEEEeCCCC
Q 003363 722 --------YVESYGS-KG--KDSFTESPSVEDLTR-------------------FHSKSPISHISKVKTPTIFLLGAQDL 771 (826)
Q Consensus 722 --------~~~~~~~-~~--~~~~~~~~~~~~~~~-------------------~~~~sp~~~~~~i~~PvLii~G~~D~ 771 (826)
+...+.. .. ..........+.... +...+....+.++++|+|+++|++|.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~ 228 (276)
T 1zoi_A 149 QVASNRAQFYRDVPAGPFYGYNRPGVEASEGIIGNWWRQGMIGSAKAHYDGIVAFSQTDFTEDLKGIQQPVLVMHGDDDQ 228 (276)
T ss_dssp HHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHHHCCSCEEEEEETTCS
T ss_pred HHHHhHHHHHHHhhhccccccccccccccHHHHHHHHhhhhhhhHHHHHHHHHHhcccchhhhccccCCCEEEEEcCCCc
Confidence 0000000 00 000000001111111 11112233466789999999999999
Q ss_pred CCCcHHHHH-HHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 772 RVPVSNGLQ-YARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 772 ~vp~~~~~~-~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
.+|+....+ +.+.+. ..++++++++||..... ...++.+.+.+|++
T Consensus 229 ~~~~~~~~~~~~~~~~----~~~~~~i~~~gH~~~~e-~p~~~~~~i~~fl~ 275 (276)
T 1zoi_A 229 IVPYENSGVLSAKLLP----NGALKTYKGYPHGMPTT-HADVINADLLAFIR 275 (276)
T ss_dssp SSCSTTTHHHHHHHST----TEEEEEETTCCTTHHHH-THHHHHHHHHHHHT
T ss_pred ccChHHHHHHHHhhCC----CceEEEcCCCCCchhhh-CHHHHHHHHHHHhc
Confidence 999885443 333333 48999999999987543 44578888999985
|
| >1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A {Streptomyces aureofaciens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.75 E-value=5.6e-17 Score=168.65 Aligned_cols=216 Identities=15% Similarity=0.214 Sum_probs=131.6
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.|.||++||.+.. ...|...+..|+++||.|+++|+||.|. +.. + .....++++.+.+..+++. ++.+
T Consensus 19 g~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G~G~---S~~---~--~~~~~~~~~~~dl~~~l~~--l~~~ 86 (274)
T 1a8q_A 19 GRPVVFIHGWPLN--GDAWQDQLKAVVDAGYRGIAHDRRGHGH---STP---V--WDGYDFDTFADDLNDLLTD--LDLR 86 (274)
T ss_dssp SSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTT---SCC---C--SSCCSHHHHHHHHHHHHHH--TTCC
T ss_pred CceEEEECCCcch--HHHHHHHHHHHHhCCCeEEEEcCCCCCC---CCC---C--CCCCcHHHHHHHHHHHHHH--cCCC
Confidence 3679999997654 5578888899999999999999999544 321 1 1123455555555555554 3457
Q ss_pred cEEEEEecchHHHHHHHHHhC-CCceeEEEecCCccchhhhccC-C-CCCCchh--------------hhhccCc--CCc
Q 003363 672 KVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALMVGT-T-DIPDWCY--------------VESYGSK--GKD 732 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~p~~~~~~~~~~-~-~~~~~~~--------------~~~~~~~--~~~ 732 (826)
++.|+||||||.+++.+++++ |++++++|+.++.......... . ..+...+ ...+... ...
T Consensus 87 ~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (274)
T 1a8q_A 87 DVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKSDKNPDGVPDEVFDALKNGVLTERSQFWKDTAEGFFSAN 166 (274)
T ss_dssp SEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred ceEEEEeCccHHHHHHHHHHhhhHheeeeeEecCCCccccccccCcccchHHHHHHHHHHhhccHHHHHHHhcccccccc
Confidence 899999999999999877765 9999999998864311000000 0 0000000 0000000 000
Q ss_pred cCCCCCChhhHH-------------------HHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEE
Q 003363 733 SFTESPSVEDLT-------------------RFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 793 (826)
Q Consensus 733 ~~~~~~~~~~~~-------------------~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 793 (826)
........+... .+...+....+.++++|+|+++|++|..+|++...+....+. ...+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~---~~~~ 243 (274)
T 1a8q_A 167 RPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDLKKFDIPTLVVHGDDDQVVPIDATGRKSAQII---PNAE 243 (274)
T ss_dssp STTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHHTTCCSCEEEEEETTCSSSCGGGTHHHHHHHS---TTCE
T ss_pred cccccccHHHHHHHHHHhhhcChHHHHHHHhhhhcCcHHHHhhcCCCCEEEEecCcCCCCCcHHHHHHHHhhC---CCce
Confidence 000000111100 111123334567899999999999999999885544333332 2478
Q ss_pred EEEeCCCCCCCCCC-CCHHHHHHHHHHHHH
Q 003363 794 VIVFPNDVHGIERP-QSDFESFLNIGLWFK 822 (826)
Q Consensus 794 ~~~~p~~~H~~~~~-~~~~~~~~~i~~w~~ 822 (826)
+++++++||.+... +...++.+.+.+||+
T Consensus 244 ~~~~~~~gH~~~~e~~~p~~~~~~i~~fl~ 273 (274)
T 1a8q_A 244 LKVYEGSSHGIAMVPGDKEKFNRDLLEFLN 273 (274)
T ss_dssp EEEETTCCTTTTTSTTHHHHHHHHHHHHHT
T ss_pred EEEECCCCCceecccCCHHHHHHHHHHHhc
Confidence 99999999987754 245578888999985
|
| >1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=176.56 Aligned_cols=241 Identities=13% Similarity=0.090 Sum_probs=150.2
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHH---HHHHHHCCcEEEEECCCCCCCCchhhhhc-CCCCCC
Q 003363 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKS---LAFLSSVGYSLLIVNYRGSLGFGEEALQS-LPGKVG 648 (826)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~---~~~la~~G~~Vl~~d~rG~~g~G~~~~~~-~~~~~~ 648 (826)
+..+..+ +.|. .+++|+||++||++.......|... .+.+++.||.|+++|++++..+....... ..+...
T Consensus 20 ~~~i~v~-~~p~----~~~~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~p~~~~~~~~~~~~~~~~~~g~~~ 94 (304)
T 1sfr_A 20 GRDIKVQ-FQSG----GANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYSDWYQPACGKAGCQ 94 (304)
T ss_dssp TEEEEEE-EECC----STTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTCTTCBCSSCEEETTEEE
T ss_pred CCceEEE-ECCC----CCCCCEEEEeCCCCCCCCcchhhcCCCHHHHHhcCCeEEEEECCCCCccccccCCccccccccc
Confidence 4566655 4443 2679999999998533223445442 35677889999999998754432110000 000001
Q ss_pred cchHHHH--HHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhc
Q 003363 649 SQDVNDV--LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 726 (826)
Q Consensus 649 ~~~~~D~--~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 726 (826)
.....+. .+++.++.++..+++++++|+|+||||++++.++.++|++|+++++.+|..++........+. ......
T Consensus 95 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~~~~~~~--~~~~~~ 172 (304)
T 1sfr_A 95 TYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQAMGPTLIG--LAMGDA 172 (304)
T ss_dssp CCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTTSTTHHHHHH--HHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCccccchhhhhh--Hhhhhc
Confidence 1223332 234445444334777899999999999999999999999999999999987643210000000 000000
Q ss_pred cCcCCccCCCCCChhhHHHHhhcCcccccCCC---CCcEEEEEeCCCC--------------CCCcHHHHHHHHHHHhCC
Q 003363 727 GSKGKDSFTESPSVEDLTRFHSKSPISHISKV---KTPTIFLLGAQDL--------------RVPVSNGLQYARALREKG 789 (826)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i---~~PvLii~G~~D~--------------~vp~~~~~~~~~~l~~~g 789 (826)
+......+.+.+. ...+...+|...+.++ ++|+++++|+.|. .++..++++++++|+++|
T Consensus 173 ~~~~~~~~~g~~~---~~~~~~~~p~~~~~~l~~~~~pi~l~~G~~D~~~~~~~~~~~~~~e~~~~~~~~~~~~~L~~~G 249 (304)
T 1sfr_A 173 GGYKASDMWGPKE---DPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTSNIKFQDAYNAGG 249 (304)
T ss_dssp TSCCHHHHHCSTT---STHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccchHHhcCCcc---hhhhHhcCHHHHHHHhhhcCCeEEEEecCCCCccccccccccchhHHHHHHHHHHHHHHHHhCC
Confidence 0000000001111 1235556776655554 5899999999998 678899999999999999
Q ss_pred -CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 790 -VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 790 -~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
+++++.+|++++|.+. .....+..++.||.++|+
T Consensus 250 ~~~v~~~~~~~g~H~~~---~w~~~l~~~l~~l~~~l~ 284 (304)
T 1sfr_A 250 GHNGVFDFPDSGTHSWE---YWGAQLNAMKPDLQRALG 284 (304)
T ss_dssp CCSEEEECCSCCCSSHH---HHHHHHHHTHHHHHHHHT
T ss_pred CCceEEEecCCCccCHH---HHHHHHHHHHHHHHHhcC
Confidence 9999999987899752 123456678889988764
|
| >3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=171.14 Aligned_cols=218 Identities=16% Similarity=0.083 Sum_probs=139.3
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCc
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 672 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 672 (826)
|+||++||.+.. ...|...+..|+++||.|+++|+||.+...... .....+++..+.+..+++.-.. .++
T Consensus 5 ~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~-------~~~~~~~~~~~~l~~~l~~l~~-~~~ 74 (258)
T 3dqz_A 5 HHFVLVHNAYHG--AWIWYKLKPLLESAGHRVTAVELAASGIDPRPI-------QAVETVDEYSKPLIETLKSLPE-NEE 74 (258)
T ss_dssp CEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTTSTTCSSCG-------GGCCSHHHHHHHHHHHHHTSCT-TCC
T ss_pred CcEEEECCCCCc--cccHHHHHHHHHhCCCEEEEecCCCCcCCCCCC-------CccccHHHhHHHHHHHHHHhcc-cCc
Confidence 889999997755 556888899999999999999999954432211 1123456666655555555322 278
Q ss_pred EEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC-------CCCCCchhhhhc---cC-----------c-C
Q 003363 673 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-------TDIPDWCYVESY---GS-----------K-G 730 (826)
Q Consensus 673 v~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~-------~~~~~~~~~~~~---~~-----------~-~ 730 (826)
+.|+|||+||.+++.++.++|++++++|+.+|.......... .....|...... +. . .
T Consensus 75 ~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3dqz_A 75 VILVGFSFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLDKYMEMPGGLGDCEFSSHETRNGTMSLLKMGPKFM 154 (258)
T ss_dssp EEEEEETTHHHHHHHHHTTCGGGEEEEEEESCCCCCSSSCTTHHHHHHHTSTTCCTTCEEEEEEETTEEEEEEECCHHHH
T ss_pred eEEEEeChhHHHHHHHHHhChHhhcEEEEecCCCCCCCCcchHHHHHhcccchhhhhcccchhhhhccChhhhhhhHHHH
Confidence 999999999999999999999999999999885432110000 000011000000 00 0 0
Q ss_pred CccCCCCCChhhHHHHh--------------hcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEE
Q 003363 731 KDSFTESPSVEDLTRFH--------------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 796 (826)
Q Consensus 731 ~~~~~~~~~~~~~~~~~--------------~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 796 (826)
...+......+....+. ...........++|+|+++|++|..+|++....+.+.+.. .++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~~~ 230 (258)
T 3dqz_A 155 KARLYQNCPIEDYELAKMLHRQGSFFTEDLSKKEKFSEEGYGSVQRVYVMSSEDKAIPCDFIRWMIDNFNV----SKVYE 230 (258)
T ss_dssp HHHTSTTSCHHHHHHHHHHCCCEECCHHHHHTSCCCCTTTGGGSCEEEEEETTCSSSCHHHHHHHHHHSCC----SCEEE
T ss_pred HHHhhccCCHHHHHHHHHhccCCchhhhhhhccccccccccccCCEEEEECCCCeeeCHHHHHHHHHhCCc----ccEEE
Confidence 00001111111111111 0122222233368999999999999999999888887754 58899
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 797 FPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 797 ~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
+|++||..... ...++.+.|.+|+++|+
T Consensus 231 ~~~~gH~~~~~-~p~~~~~~i~~fl~~~~ 258 (258)
T 3dqz_A 231 IDGGDHMVMLS-KPQKLFDSLSAIATDYM 258 (258)
T ss_dssp ETTCCSCHHHH-SHHHHHHHHHHHHHHTC
T ss_pred cCCCCCchhhc-ChHHHHHHHHHHHHHhC
Confidence 99999986643 44578899999999875
|
| >1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase, polyketide, tailoring enzyme, structural proteomics in europe, spine; HET: AKT 1PE; 1.45A {Streptomyces purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-17 Score=171.98 Aligned_cols=231 Identities=13% Similarity=0.145 Sum_probs=140.7
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHH-HHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCc
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKS-LAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~-~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~ 649 (826)
.+|..+++..+.|+ ..|.||++||.+.. ...|... +..|+++||.|+++|+||.|.+... . + ....
T Consensus 8 ~~g~~l~y~~~G~~------~~~~vvllHG~~~~--~~~w~~~~~~~L~~~G~~vi~~D~rG~G~S~~~---~-~-~~~~ 74 (298)
T 1q0r_A 8 SGDVELWSDDFGDP------ADPALLLVMGGNLS--ALGWPDEFARRLADGGLHVIRYDHRDTGRSTTR---D-F-AAHP 74 (298)
T ss_dssp ETTEEEEEEEESCT------TSCEEEEECCTTCC--GGGSCHHHHHHHHTTTCEEEEECCTTSTTSCCC---C-T-TTSC
T ss_pred cCCeEEEEEeccCC------CCCeEEEEcCCCCC--ccchHHHHHHHHHhCCCEEEeeCCCCCCCCCCC---C-C-CcCC
Confidence 35667766555332 34689999997654 4567654 4889999999999999995443210 0 0 1112
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCcc-chhhh------------ccCCC
Q 003363 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC-NLALM------------VGTTD 716 (826)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~-~~~~~------------~~~~~ 716 (826)
..++++.+.+..+++. ++.+++.|+||||||.+++.++.++|++++++|+.++.. ..... .....
T Consensus 75 ~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (298)
T 1q0r_A 75 YGFGELAADAVAVLDG--WGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDANIERVMRGEPTLDGLP 152 (298)
T ss_dssp CCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHHHHHHHHHTCCCSSCSC
T ss_pred cCHHHHHHHHHHHHHH--hCCCceEEEEeCcHHHHHHHHHHhCchhhheeEEecccCCCcccccchhhhhhhhhhhcccc
Confidence 3455555555555554 345789999999999999999999999999999988754 21000 00000
Q ss_pred CCCchhhhhc-c----CcC--------C---ccC--CCC-CChhhHHH-----Hh-----------------hcCcccc-
Q 003363 717 IPDWCYVESY-G----SKG--------K---DSF--TES-PSVEDLTR-----FH-----------------SKSPISH- 754 (826)
Q Consensus 717 ~~~~~~~~~~-~----~~~--------~---~~~--~~~-~~~~~~~~-----~~-----------------~~sp~~~- 754 (826)
.........+ . ... . ..+ ... ...+.... +. ..+....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (298)
T 1q0r_A 153 GPQQPFLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEPYAHYSLTLPPPSRAAE 232 (298)
T ss_dssp CCCHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCCCGGGGCCCCCGGGGGG
T ss_pred cccHHHHHHHhccCcccccHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHhhccCCccchhhhhhhhhcCccccccc
Confidence 0000000000 0 000 0 000 000 00010000 00 0011224
Q ss_pred cCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 755 ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 755 ~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
+.++++|+|+++|++|..+|++.++.+.+.+.. .+++++|++||.. + .++.+.+.+|+.+++
T Consensus 233 l~~i~~P~Lvi~G~~D~~~~~~~~~~~~~~~p~----~~~~~i~~~gHe~--p---~~~~~~i~~fl~~~~ 294 (298)
T 1q0r_A 233 LREVTVPTLVIQAEHDPIAPAPHGKHLAGLIPT----ARLAEIPGMGHAL--P---SSVHGPLAEVILAHT 294 (298)
T ss_dssp GGGCCSCEEEEEETTCSSSCTTHHHHHHHTSTT----EEEEEETTCCSSC--C---GGGHHHHHHHHHHHH
T ss_pred ccccCCCEEEEEeCCCccCCHHHHHHHHHhCCC----CEEEEcCCCCCCC--c---HHHHHHHHHHHHHHh
Confidence 678899999999999999999998887776654 7999999999922 2 367888999998764
|
| >3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.2e-18 Score=192.17 Aligned_cols=242 Identities=12% Similarity=0.098 Sum_probs=160.8
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-----------------cc----hHHHHHHHHCCcEEE
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-----------------SY----SKSLAFLSSVGYSLL 625 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-----------------~~----~~~~~~la~~G~~Vl 625 (826)
.+...||..|.+.+|.|++ .+++|+||+.||.+...... .+ ....+.|+++||+|+
T Consensus 45 ~i~~~DG~~L~a~l~~P~~---~~~~P~vl~~~pyg~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~Gy~vv 121 (560)
T 3iii_A 45 TVEMRDGEKLYINIFRPNK---DGKFPVVMSADTYGKDNKPKITNMGALWPTLGTIPTSSFTPEESPDPGFWVPNDYVVV 121 (560)
T ss_dssp EEECTTSCEEEEEEEECSS---SSCEEEEEEEESSCTTCCCC--CHHHHSGGGCCCCCCTTCCTTSCCHHHHGGGTCEEE
T ss_pred EEECCCCcEEEEEEEecCC---CCCCCEEEEecCCCCCcccccccccccccccccccccccccccCCCHHHHHhCCCEEE
Confidence 4556688999999999983 57899999999854432110 00 013678999999999
Q ss_pred EECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCc
Q 003363 626 IVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (826)
Q Consensus 626 ~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~ 705 (826)
++|+||+++++..+. .++..+.+|+.++++|+.+++..| .||+++|+|+||++++.+|+..|+.++|+|+.+|+
T Consensus 122 ~~D~RG~G~S~G~~~-----~~~~~~~~D~~~~i~~l~~~~~~~-~~igl~G~S~GG~~al~~a~~~p~~l~aiv~~~~~ 195 (560)
T 3iii_A 122 KVALRGSDKSKGVLS-----PWSKREAEDYYEVIEWAANQSWSN-GNIGTNGVSYLAVTQWWVASLNPPHLKAMIPWEGL 195 (560)
T ss_dssp EEECTTSTTCCSCBC-----TTSHHHHHHHHHHHHHHHTSTTEE-EEEEEEEETHHHHHHHHHHTTCCTTEEEEEEESCC
T ss_pred EEcCCCCCCCCCccc-----cCChhHHHHHHHHHHHHHhCCCCC-CcEEEEccCHHHHHHHHHHhcCCCceEEEEecCCc
Confidence 999999887766542 344567999999999999988777 89999999999999999999999999999999999
Q ss_pred cchhh---hccCCCCCC----chh--hhhccC-cCC----ccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCC
Q 003363 706 CNLAL---MVGTTDIPD----WCY--VESYGS-KGK----DSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 771 (826)
Q Consensus 706 ~~~~~---~~~~~~~~~----~~~--~~~~~~-~~~----~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~ 771 (826)
.|+.. +.+...... |.. ...... ... ..+...+..+ +.|...++ .+++|++|+|+++|..|.
T Consensus 196 ~d~~~~~~~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~hp~~d--~~W~~~~~--~~~~I~vPvl~v~Gw~D~ 271 (560)
T 3iii_A 196 NDMYREVAFHGGIPDTGFYRFWTQGIFARWTDNPNIEDLIQAQQEHPLFD--DFWKQRQV--PLSQIKTPLLTCASWSTQ 271 (560)
T ss_dssp CBHHHHTTEETTEECCSHHHHHHHHHHHHTTTCTTBCCHHHHHHHCCSSC--HHHHTTBC--CGGGCCSCEEEEEEGGGT
T ss_pred ccccccceecCCCCchhHHHHHHhhhccccccccchHHHHHHHHHCCCcc--hHhhccCC--chhhCCCCEEEeCCcCCC
Confidence 98643 111111111 100 000000 000 0011111111 12333444 678999999999999997
Q ss_pred CCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 772 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 772 ~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
.+....+.+.+++++..+ ..+++.+ .+|.... - ..+..+..++||++|||
T Consensus 272 ~~~~~g~l~~y~~l~~~~--k~l~ih~-~~~~~~~-~-~~~~~~~~~~wfD~~Lk 321 (560)
T 3iii_A 272 GLHNRGSFEGFKQAASEE--KWLYVHG-RKEWESY-Y-ARENLERQKSFFDFYLK 321 (560)
T ss_dssp TTTHHHHHHHHHHCCCSS--EEEEEES-SCHHHHH-H-SHHHHHHHHHHHHHHTS
T ss_pred cccchhHHHHHHhccccC--cEEEECC-CCCcCcc-c-ChhHHHHHHHHHHHHhC
Confidence 666677777888776532 3343322 2232100 0 12456788999999996
|
| >2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-17 Score=172.64 Aligned_cols=230 Identities=14% Similarity=0.105 Sum_probs=143.8
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCc
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~ 649 (826)
-+|..++...+.|+ ..|.||++||.+.. .. .|...+..| +.||.|+++|+||.| .+.. .+.....
T Consensus 10 ~~g~~l~~~~~G~~------~~~~vvllHG~~~~--~~~~w~~~~~~L-~~~~~vi~~Dl~G~G---~S~~--~~~~~~~ 75 (286)
T 2yys_A 10 VGEAELYVEDVGPV------EGPALFVLHGGPGG--NAYVLREGLQDY-LEGFRVVYFDQRGSG---RSLE--LPQDPRL 75 (286)
T ss_dssp CSSCEEEEEEESCT------TSCEEEEECCTTTC--CSHHHHHHHGGG-CTTSEEEEECCTTST---TSCC--CCSCGGG
T ss_pred ECCEEEEEEeecCC------CCCEEEEECCCCCc--chhHHHHHHHHh-cCCCEEEEECCCCCC---CCCC--CccCccc
Confidence 35667766655432 34789999998765 45 677777778 568999999999954 4321 0111012
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh----hc-cC--CCCCC-ch
Q 003363 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL----MV-GT--TDIPD-WC 721 (826)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~----~~-~~--~~~~~-~~ 721 (826)
..++++.+.+..+++. ++.+++.|+||||||.+++.++.++|+ ++++|+.+|..+... .. .. ..... ..
T Consensus 76 ~~~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (286)
T 2yys_A 76 FTVDALVEDTLLLAEA--LGVERFGLLAHGFGAVVALEVLRRFPQ-AEGAILLAPWVNFPWLAARLAEAAGLAPLPDPEE 152 (286)
T ss_dssp CCHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHCTT-EEEEEEESCCCBHHHHHHHHHHHTTCCCCSCHHH
T ss_pred CcHHHHHHHHHHHHHH--hCCCcEEEEEeCHHHHHHHHHHHhCcc-hheEEEeCCccCcHHHHHHHHHHhccccchhHHH
Confidence 3455666555555555 345789999999999999999999999 999999998653221 00 00 00000 00
Q ss_pred -hh------------hh--ccCc-------CC-ccCCCCCChhhHHH--H---hhcCcccccCCCCCcEEEEEeCCCCCC
Q 003363 722 -YV------------ES--YGSK-------GK-DSFTESPSVEDLTR--F---HSKSPISHISKVKTPTIFLLGAQDLRV 773 (826)
Q Consensus 722 -~~------------~~--~~~~-------~~-~~~~~~~~~~~~~~--~---~~~sp~~~~~~i~~PvLii~G~~D~~v 773 (826)
.. .. +... .. ..+........... + ...+....+.++++|+|+++|++|..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~ 232 (286)
T 2yys_A 153 NLKEALKREEPKALFDRLMFPTPRGRMAYEWLAEGAGILGSDAPGLAFLRNGLWRLDYTPYLTPERRPLYVLVGERDGTS 232 (286)
T ss_dssp HHHHHHHHSCHHHHHHHHHCSSHHHHHHHHHHHHHTTCCCCSHHHHHHHHTTGGGCBCGGGCCCCSSCEEEEEETTCTTT
T ss_pred HHHHHhccCChHHHHHhhhccCCccccChHHHHHHHhhccccccchhhcccccccCChhhhhhhcCCCEEEEEeCCCCcC
Confidence 00 00 0000 00 00000000000000 1 111233457789999999999999999
Q ss_pred CcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 774 PVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 774 p~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
|++ +..+.+ +.. .++++++++||...... ..++.+.|.+|+.+.
T Consensus 233 ~~~-~~~~~~-~~~----~~~~~i~~~gH~~~~e~-p~~~~~~i~~fl~~~ 276 (286)
T 2yys_A 233 YPY-AEEVAS-RLR----APIRVLPEAGHYLWIDA-PEAFEEAFKEALAAL 276 (286)
T ss_dssp TTT-HHHHHH-HHT----CCEEEETTCCSSHHHHC-HHHHHHHHHHHHHTT
T ss_pred CHh-HHHHHh-CCC----CCEEEeCCCCCCcChhh-HHHHHHHHHHHHHhh
Confidence 999 888888 765 58889999999876444 457889999999763
|
| >3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A | Back alignment and structure |
|---|
Probab=99.74 E-value=8.2e-17 Score=180.21 Aligned_cols=232 Identities=16% Similarity=0.172 Sum_probs=144.0
Q ss_pred eccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCC
Q 003363 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (826)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~ 647 (826)
+.+.+|..++.... +..|+||++||++.. ...|...+..|+++||.|+++|+||.+.+... .
T Consensus 8 ~~~~dG~~l~y~~~--------G~gp~VV~lHG~~~~--~~~~~~l~~~La~~Gy~Vi~~D~rG~G~S~~~--------~ 69 (456)
T 3vdx_A 8 QENSTSIDLYYEDH--------GTGVPVVLIHGFPLS--GHSWERQSAALLDAGYRVITYDRRGFGQSSQP--------T 69 (456)
T ss_dssp EETTEEEEEEEEEE--------SSSEEEEEECCTTCC--GGGGTTHHHHHHHHTEEEEEECCTTSTTSCCC--------S
T ss_pred ccccCCeEEEEEEe--------CCCCEEEEECCCCCc--HHHHHHHHHHHHHCCcEEEEECCCCCCCCCCC--------C
Confidence 34556666653322 145899999998765 45677788999999999999999995443211 1
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhC-CCceeEEEecCCccchhhhccCCCCCC---c---
Q 003363 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALMVGTTDIPD---W--- 720 (826)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~p~~~~~~~~~~~~~~~---~--- 720 (826)
....+++..+.+..+++. ++.++++|+|||+||.+++.+++.+ |++++++|+.+|............... .
T Consensus 70 ~~~s~~~~a~dl~~~l~~--l~~~~v~LvGhS~GG~ia~~~aa~~~p~~v~~lVli~~~~~~~~~~~~~~~~~~~~~~~~ 147 (456)
T 3vdx_A 70 TGYDYDTFAADLNTVLET--LDLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLEPFLLKTDDNPDGAAPQEFFD 147 (456)
T ss_dssp SCCSHHHHHHHHHHHHHH--HTCCSEEEEEEGGGGHHHHHHHHHHCSSSEEEEEEESCCCSCCBCCSSCCSCSBCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH--hCCCCeEEEEECHHHHHHHHHHHhcchhheeEEEEeCCcccccccccccccccchHHHHH
Confidence 122344444444444443 3457899999999999998888876 899999999998764211100000000 0
Q ss_pred -----------hhh----hhccCcCCccCCCCCChhhHHHHh------------------hcCcccccCCCCCcEEEEEe
Q 003363 721 -----------CYV----ESYGSKGKDSFTESPSVEDLTRFH------------------SKSPISHISKVKTPTIFLLG 767 (826)
Q Consensus 721 -----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~------------------~~sp~~~~~~i~~PvLii~G 767 (826)
.+. ..+... ..........+....+. ..+....+.++++|+|+++|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~PvLiI~G 226 (456)
T 3vdx_A 148 GIVAAVKADRYAFYTGFFNDFYNL-DENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVPALILHG 226 (456)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTTT-TTSBTTTBCHHHHHHHHHHHHTSCTTHHHHGGGGTTCCCTTTSTTCCSCCEEEEE
T ss_pred HHHHhhhccchHHHHHHHHHHhcc-cccccccccHHHHHHHhhhccccchhhhhhhhhhhhhhHHHHhhhCCCCEEEEEe
Confidence 000 000000 00000000111111100 11334556788999999999
Q ss_pred CCCCCCCcH-HHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 768 AQDLRVPVS-NGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 768 ~~D~~vp~~-~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
++|..+|++ ....+.+.+. ++++++++++||.+.. +...++...+.+||++++
T Consensus 227 ~~D~~vp~~~~~~~l~~~~~----~~~~~~i~gagH~~~~-e~p~~v~~~I~~FL~~~l 280 (456)
T 3vdx_A 227 TGDRTLPIENTARVFHKALP----SAEYVEVEGAPHGLLW-THAEEVNTALLAFLAKAL 280 (456)
T ss_dssp TTCSSSCGGGTHHHHHHHCT----TSEEEEETTCCSCTTT-TTHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHCC----CceEEEeCCCCCcchh-hCHHHHHHHHHHHHHHhh
Confidence 999999998 4444444443 4799999999998765 455688999999999875
|
| >3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A | Back alignment and structure |
|---|
Probab=99.74 E-value=8.7e-18 Score=193.17 Aligned_cols=244 Identities=14% Similarity=0.111 Sum_probs=164.5
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-ccchHHH-HHHHHCCcEEEEECCCCCCCCchhhhhcCC
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLP 644 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~~~~~-~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~ 644 (826)
.+...||..|.+.+|.|++ .+++|+||+.||.+..... ..|...+ +.|+++||+|+++|+||+++++..+..
T Consensus 13 ~i~~~DG~~L~~~~~~P~~---~~~~P~vv~~~~~g~~~~~~~~y~~~~~~~la~~Gy~vv~~D~RG~G~S~g~~~~--- 86 (587)
T 3i2k_A 13 MVPMRDGVRLAVDLYRPDA---DGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASEGEFVP--- 86 (587)
T ss_dssp EEECTTSCEEEEEEEEECC---SSCEEEEEEEESSCTTCHHHHHTTTCCTHHHHHTTCEEEEEECTTSTTCCSCCCT---
T ss_pred EEECCCCCEEEEEEEECCC---CCCeeEEEEECCcCCCccccccchhhHHHHHHHCCCEEEEEcCCCCCCCCCcccc---
Confidence 3445578899999999973 5688999999985433210 0122123 889999999999999998877654321
Q ss_pred CCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCc-cchhhhc-cCCCCC----
Q 003363 645 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL-CNLALMV-GTTDIP---- 718 (826)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~-~~~~~~~-~~~~~~---- 718 (826)
...+.+|+.++++|+.+++..+ .+|+++|+||||++++.+++++|+.++++|+.++. .++.... ......
T Consensus 87 ---~~~~~~D~~~~i~~l~~~~~~~-~~v~l~G~S~GG~~a~~~a~~~~~~l~a~v~~~~~~~d~~~~~~~~gG~~~~~~ 162 (587)
T 3i2k_A 87 ---HVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGPGGALSVEA 162 (587)
T ss_dssp ---TTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCSCTTCCCCHHH
T ss_pred ---ccchhHHHHHHHHHHHhCCCCC-CeEEEEeeCHHHHHHHHHHhhCCCccEEEEEeCCcccccccceeecCCccccch
Confidence 2357899999999999887655 79999999999999999999999999999999998 6653211 000000
Q ss_pred --Cchhhhh------------------------------c-cCcCC-------------ccC-CCCCChhhHHHHhhcCc
Q 003363 719 --DWCYVES------------------------------Y-GSKGK-------------DSF-TESPSVEDLTRFHSKSP 751 (826)
Q Consensus 719 --~~~~~~~------------------------------~-~~~~~-------------~~~-~~~~~~~~~~~~~~~sp 751 (826)
.|..... + ..... ..+ ...+. ....|...++
T Consensus 163 ~~~w~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~yw~~~s~ 240 (587)
T 3i2k_A 163 LLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHPD--NDESWQSISL 240 (587)
T ss_dssp HHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHTCHHHHHTCSSTTCCHHHHHHCTHHHHTTTTCCS--CCHHHHTTCC
T ss_pred HHHHHHHhhhhcccccccCCccchhhhhhhhhhhhHHHHHHhcCCcccchhccccchhHHhhhhcCCC--CChHHhcCCh
Confidence 1211000 0 00000 000 11111 1233556777
Q ss_pred ccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCC---------CCCHH---HHHHHHHH
Q 003363 752 ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER---------PQSDF---ESFLNIGL 819 (826)
Q Consensus 752 ~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~---------~~~~~---~~~~~i~~ 819 (826)
...+++|++|+|+++|..|..+ ..+.+++++|+..+. .++++-|.. |.... +.... +..+.+++
T Consensus 241 ~~~l~~I~vPvL~v~Gw~D~~~--~~~~~~~~~l~~~~~-~~L~iGPw~-H~~~~~~~g~~~~g~~~~~~~~~~~~~~~~ 316 (587)
T 3i2k_A 241 FERLGGLATPALITAGWYDGFV--GESLRTFVAVKDNAD-ARLVVGPWS-HSNLTGRNADRKFGIAATYPIQEATTMHKA 316 (587)
T ss_dssp HHHHTTCCCCEEEEEEEECTTH--HHHHHHHHHHTTTSC-EEEEEEEEE-TTBCSSEETTEECCGGGSCCHHHHHHHHHH
T ss_pred hhhhccCCCCEEEEccCCCccc--hHHHHHHHHHhhcCC-CEEEECCcc-ccCccccCCCcccCCccccccchhhHHHHH
Confidence 7889999999999999999875 567889999987664 366666653 65311 11111 33488999
Q ss_pred HHHHHcC
Q 003363 820 WFKKYCK 826 (826)
Q Consensus 820 w~~~~l~ 826 (826)
||++|||
T Consensus 317 wFD~~Lk 323 (587)
T 3i2k_A 317 FFDRHLR 323 (587)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 9999996
|
| >3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-17 Score=173.53 Aligned_cols=227 Identities=14% Similarity=0.150 Sum_probs=144.5
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcch
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~ 651 (826)
+|..++..... +.|+||++||.+.. ...|...+..|.++||.|+++|+||.+. +.. ......
T Consensus 17 ~g~~l~~~~~g--------~~~~vv~~HG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G~G~---S~~-----~~~~~~ 78 (309)
T 3u1t_A 17 EGATIAYVDEG--------SGQPVLFLHGNPTS--SYLWRNIIPYVVAAGYRAVAPDLIGMGD---SAK-----PDIEYR 78 (309)
T ss_dssp TTEEEEEEEEE--------CSSEEEEECCTTCC--GGGGTTTHHHHHHTTCEEEEECCTTSTT---SCC-----CSSCCC
T ss_pred CCeEEEEEEcC--------CCCEEEEECCCcch--hhhHHHHHHHHHhCCCEEEEEccCCCCC---CCC-----CCcccC
Confidence 56666544432 24789999997655 4567777888788899999999999543 321 111334
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhcc--------------CCCC
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG--------------TTDI 717 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~--------------~~~~ 717 (826)
++++.+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.+|......... ....
T Consensus 79 ~~~~~~~~~~~~~~--~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (309)
T 3u1t_A 79 LQDHVAYMDGFIDA--LGLDDMVLVIHDWGSVIGMRHARLNPDRVAAVAFMEALVPPALPMPSYEAMGPQLGPLFRDLRT 156 (309)
T ss_dssp HHHHHHHHHHHHHH--HTCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEESCTTTCSBSCSGGGHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHH--cCCCceEEEEeCcHHHHHHHHHHhChHhheEEEEeccCCCCccccccccccchhhhHHHHHHhc
Confidence 66666666666655 2447899999999999999999999999999999887543210000 0000
Q ss_pred C---------CchhhhhccCcCCccCCCCCChhhHHHHhh-----------------c--------------CcccccCC
Q 003363 718 P---------DWCYVESYGSKGKDSFTESPSVEDLTRFHS-----------------K--------------SPISHISK 757 (826)
Q Consensus 718 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~--------------sp~~~~~~ 757 (826)
+ ...+...+.... ........+....+.. . +....+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (309)
T 3u1t_A 157 ADVGEKMVLDGNFFVETILPEM--GVVRSLSEAEMAAYRAPFPTRQSRLPTLQWPREVPIGGEPAFAEAEVLKNGEWLMA 234 (309)
T ss_dssp TTHHHHHHTTTCHHHHTHHHHT--SCSSCCCHHHHHHHHTTCCSTGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHH
T ss_pred cchhhhhccccceehhhhcccc--cccccCCHHHHHHHHHhcCCccccchHHHHHHHhccccccchhhhhhhhhhhhccc
Confidence 0 000000000000 0000001111111110 0 11123567
Q ss_pred CCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 758 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 758 i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
+++|+|+++|++|..+|++.+..+.+.+.. .++++++++||..... ...++...|.+||+++.
T Consensus 235 i~~P~l~i~G~~D~~~~~~~~~~~~~~~~~----~~~~~~~~~gH~~~~~-~p~~~~~~i~~fl~~~~ 297 (309)
T 3u1t_A 235 SPIPKLLFHAEPGALAPKPVVDYLSENVPN----LEVRFVGAGTHFLQED-HPHLIGQGIADWLRRNK 297 (309)
T ss_dssp CCSCEEEEEEEECSSSCHHHHHHHHHHSTT----EEEEEEEEESSCHHHH-CHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEecCCCCCCCHHHHHHHHhhCCC----CEEEEecCCcccchhh-CHHHHHHHHHHHHHhcc
Confidence 899999999999999999998888887754 6778889999976543 44578889999998864
|
| >3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=172.02 Aligned_cols=227 Identities=15% Similarity=0.233 Sum_probs=142.4
Q ss_pred ccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
...+|..+++....+ +..|+||++||.+.. ...|...+..|++ +|.|+++|+||. |.+... ..
T Consensus 10 ~~~~g~~l~y~~~G~------~~~p~lvl~hG~~~~--~~~w~~~~~~L~~-~~~vi~~D~rG~---G~S~~~-----~~ 72 (266)
T 3om8_A 10 ATSDGASLAYRLDGA------AEKPLLALSNSIGTT--LHMWDAQLPALTR-HFRVLRYDARGH---GASSVP-----PG 72 (266)
T ss_dssp ECTTSCEEEEEEESC------TTSCEEEEECCTTCC--GGGGGGGHHHHHT-TCEEEEECCTTS---TTSCCC-----CS
T ss_pred eccCCcEEEEEecCC------CCCCEEEEeCCCccC--HHHHHHHHHHhhc-CcEEEEEcCCCC---CCCCCC-----CC
Confidence 344677777665532 235889999996654 4578878888875 799999999994 444211 11
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh----------hccCCCCC
Q 003363 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL----------MVGTTDIP 718 (826)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~----------~~~~~~~~ 718 (826)
...++++.+.+..+++. +..+++.|+||||||.+++.++.++|++++++|+.++...... ........
T Consensus 73 ~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (266)
T 3om8_A 73 PYTLARLGEDVLELLDA--LEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQWDERIAAVLQAEDMS 150 (266)
T ss_dssp CCCHHHHHHHHHHHHHH--TTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSBCCCSHHHHHHHHHHHHCSSSH
T ss_pred CCCHHHHHHHHHHHHHH--hCCCceEEEEEChHHHHHHHHHHhChHhhheeeEecCcccCCchhHHHHHHHHHHccccHH
Confidence 23455555555555554 3457899999999999999999999999999999876432100 00000000
Q ss_pred Cch--hhhhccCcCCccCCCCCC-hhh----------------HHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHH
Q 003363 719 DWC--YVESYGSKGKDSFTESPS-VED----------------LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGL 779 (826)
Q Consensus 719 ~~~--~~~~~~~~~~~~~~~~~~-~~~----------------~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~ 779 (826)
... ....+... ......+. .+. ...+...+....+.++++|+|+++|++|..+|++.++
T Consensus 151 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lvi~G~~D~~~~~~~~~ 228 (266)
T 3om8_A 151 ETAAGFLGNWFPP--ALLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIAGAYDTVTAASHGE 228 (266)
T ss_dssp HHHHHHHHHHSCH--HHHHSCCHHHHHHHHHHHTSCHHHHHHHHHHHHTCBCTTTGGGCCSCEEEEEETTCSSSCHHHHH
T ss_pred HHHHHHHHHhcCh--hhhhcChHHHHHHHHHHHhCCHHHHHHHHHHhhccchhhHhcCCCCCEEEEEeCCCCCCCHHHHH
Confidence 000 00000000 00000000 000 0011122223457789999999999999999999999
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 780 QYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 780 ~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
.+.+.+.. .++++++ +||....+. ..++...+.+||.
T Consensus 229 ~l~~~ip~----a~~~~i~-~gH~~~~e~-p~~~~~~i~~Fl~ 265 (266)
T 3om8_A 229 LIAASIAG----ARLVTLP-AVHLSNVEF-PQAFEGAVLSFLG 265 (266)
T ss_dssp HHHHHSTT----CEEEEES-CCSCHHHHC-HHHHHHHHHHHHT
T ss_pred HHHHhCCC----CEEEEeC-CCCCccccC-HHHHHHHHHHHhc
Confidence 88888765 6888897 799765433 4477888888875
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-16 Score=186.37 Aligned_cols=263 Identities=10% Similarity=0.079 Sum_probs=174.6
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
.+..++|||| ++++|..+. .++..+ .+++..+++...... ..++|||||++|||+.
T Consensus 83 ~v~~~~~spd-~~~~~~~~~-----~i~~~d~~~~~~~~l~~~~~~~----------~~~~~SpdG~~la~~~------- 139 (706)
T 2z3z_A 83 PSFRTLDAGR-GLVVLFTQG-----GLVGFDMLARKVTYLFDTNEET----------ASLDFSPVGDRVAYVR------- 139 (706)
T ss_dssp CCEEEEETTT-TEEEEEETT-----EEEEEETTTTEEEEEECCTTCC----------TTCEECTTSSEEEEEE-------
T ss_pred CceeEEECCC-CeEEEEECC-----EEEEEECCCCceEEccCCcccc----------cCCcCCCCCCEEEEEE-------
Confidence 4788999999 888887652 355444 455555555433333 7899999999999962
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccC-----CceEeccCCCCCCc------------
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS-----GEVQAVKGIPKSLS------------ 296 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~-----g~~~~l~~~~~~~~------------ 296 (826)
...|++||+.+ ++.++++ .....
T Consensus 140 --------------------------------------~~~i~v~~~~~~~~~~g~~~~~~--~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 140 --------------------------------------NHNLYIARGGKLGEGMSRAIAVT--IDGTETLVYGQAVHQRE 179 (706)
T ss_dssp --------------------------------------TTEEEEEECBCTTSCCCCCEESC--SCCBTTEEESSCCGGGC
T ss_pred --------------------------------------CCeEEEEecCcccccCCCcEEec--cCCCCCeEcccchhhhh
Confidence 25799999999 8888873 32222
Q ss_pred ---cceEEEeeCCCCCccEEEEEeecCcc--------------eeeeeeee----ccCCCceEEEEcccccchhhhhhhh
Q 003363 297 ---VGQVVWAPLNEGLHQYLVFVGWSSET--------------RKLGIKYC----YNRPCALYAVRVSLYKSEASELELK 355 (826)
Q Consensus 297 ---~~~~~wSPDg~~~~~~lvf~~~~~~~--------------~~~g~~~~----~~~~~~l~~~d~~~~~~~~~~~~~~ 355 (826)
+..+.|||||+. |+|.+..... ......|. .+....|+++|+
T Consensus 180 ~~~~~~~~~SpDg~~----la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~------------- 242 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSC----LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHL------------- 242 (706)
T ss_dssp TTCCCSEEECTTSSE----EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEET-------------
T ss_pred cCCCceEEECCCCCE----EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEEC-------------
Confidence 468999999999 9998732210 00000000 123357999998
Q ss_pred cCCCCCCcceecCC---CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCC-CCCcccceeeeeeeee
Q 003363 356 ESSSEDLPVVNLTE---SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG-NFSSLEKIVDVIPVVQ 431 (826)
Q Consensus 356 ~~~~~~~~~~~Lt~---~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~ 431 (826)
++++.+.++. ....+..+.|||||++|++.+.+.. .....|+++|+.++. .+.+....
T Consensus 243 ----~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~------~~~~~v~~~d~~~g~~~~~~~~~~-------- 304 (706)
T 2z3z_A 243 ----ATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA------QNECKVNAYDAETGRFVRTLFVET-------- 304 (706)
T ss_dssp ----TTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT------SCEEEEEEEETTTCCEEEEEEEEE--------
T ss_pred ----CCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC------CCeeEEEEEECCCCceeeEEEEcc--------
Confidence 6777666653 2345678999999999999876531 234689999998863 22111100
Q ss_pred ccCCCCCcccccCCCCCCcccc--CCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeee-EEEeecCCEEEEEEeC
Q 003363 432 CAEGDCFPGLYSSSILSNPWLS--DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSW-SLLTLDGDNIIAVSSS 508 (826)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws~--Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~-~~~s~dg~~l~~~~s~ 508 (826)
... |......+.|+| ||+ +++.+..++..+||.+|..++..+.|+.....+.. ..|+++++.|++....
T Consensus 305 --~~~-----~~~~~~~~~~sp~~dg~-~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 305 --DKH-----YVEPLHPLTFLPGSNNQ-FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp --CSS-----CCCCCSCCEECTTCSSE-EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred --CCC-----eECccCCceeecCCCCE-EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence 000 111124678999 998 55666666788999999888888888876654543 5899999998888765
Q ss_pred CCC-CCeEEEEeeccc
Q 003363 509 PVD-VPQVKYGYFVDK 523 (826)
Q Consensus 509 ~~~-p~~l~~~~~~~~ 523 (826)
... -..||..++.++
T Consensus 377 ~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 377 ASPLERHFYCIDIKGG 392 (706)
T ss_dssp SCTTCBEEEEEETTCC
T ss_pred CCCceEEEEEEEcCCC
Confidence 321 246777776543
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A | Back alignment and structure |
|---|
Probab=99.73 E-value=9.3e-17 Score=165.03 Aligned_cols=210 Identities=16% Similarity=0.208 Sum_probs=130.4
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchH-HHHHHHHHHHHHcCCCCCC
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV-NDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~-~D~~~~i~~l~~~~~~d~~ 671 (826)
|.||++||.+.. ....|...+..|+++||.|+++|+||.+.+... ...+..... +++.++++++.+. +.+
T Consensus 24 ~~vvllHG~~~~-~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~-----~~~~~~~~~~~~~~~~~~~l~~l---~~~ 94 (254)
T 2ocg_A 24 HAVLLLPGMLGS-GETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPP-----DRDFPADFFERDAKDAVDLMKAL---KFK 94 (254)
T ss_dssp EEEEEECCTTCC-HHHHCHHHHHHSCTTTEEEEEECCTTSTTCCSS-----CCCCCTTHHHHHHHHHHHHHHHT---TCS
T ss_pred CeEEEECCCCCC-CccchHHHHHHHhhCCCeEEEECCCCCCCCCCC-----CCCCChHHHHHHHHHHHHHHHHh---CCC
Confidence 679999996543 123577788888899999999999995443211 111111112 3344444444333 347
Q ss_pred cEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh-----hccCCCCCCchhh------hhccCcCCccCCCCCCh
Q 003363 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-----MVGTTDIPDWCYV------ESYGSKGKDSFTESPSV 740 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~-----~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 740 (826)
++.|+|||+||.+++.+|.++|++++++|+.+|...... +....+...|... ..++... +. ..+
T Consensus 95 ~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~ 169 (254)
T 2ocg_A 95 KVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSERTRKPLEALYGYDY---FA--RTC 169 (254)
T ss_dssp SEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHTTSCGGGSCHHHHHHHHHHHCHHH---HH--HHH
T ss_pred CEEEEEECHhHHHHHHHHHHChHHhhheeEeccccccChhhHHHHHHHHHHHHHHHHhHHHHHHHhcchh---hH--HHH
Confidence 899999999999999999999999999999887532110 0000111111000 0000000 00 000
Q ss_pred hh----HHHHhh----cCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHH
Q 003363 741 ED----LTRFHS----KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFE 812 (826)
Q Consensus 741 ~~----~~~~~~----~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~ 812 (826)
.. ...+.. ......+.++++|+|+++|++|..+|++.+..+.+.++. .+++++|++||..... ...+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~----~~~~~~~~~gH~~~~e-~p~~ 244 (254)
T 2ocg_A 170 EKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVKG----SRLHLMPEGKHNLHLR-FADE 244 (254)
T ss_dssp HHHHHHHHGGGGSGGGBSSGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHHSTT----CEEEEETTCCTTHHHH-THHH
T ss_pred HHHHHHHHHHHhccCCchhhhhhhcccCCEEEEecCCCccCCHHHHHHHHHhCCC----CEEEEcCCCCCchhhh-CHHH
Confidence 00 000000 012345678999999999999999999998888877754 6899999999987643 3446
Q ss_pred HHHHHHHHH
Q 003363 813 SFLNIGLWF 821 (826)
Q Consensus 813 ~~~~i~~w~ 821 (826)
+.+.+.+||
T Consensus 245 ~~~~i~~fl 253 (254)
T 2ocg_A 245 FNKLAEDFL 253 (254)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777888887
|
| >4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.5e-17 Score=163.26 Aligned_cols=203 Identities=13% Similarity=0.118 Sum_probs=133.1
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHH--CCcEEEEECCCCCCC------CchhhhhcCCCC-
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS--VGYSLLIVNYRGSLG------FGEEALQSLPGK- 646 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~--~G~~Vl~~d~rG~~g------~G~~~~~~~~~~- 646 (826)
+...++.|+ ....++||++||.+.. ...+......|.. .++.++.|+-+.... .+..|.......
T Consensus 25 l~y~ii~P~----~~~~~~VI~LHG~G~~--~~dl~~l~~~l~~~~~~~~~i~P~Ap~~~~~~~~~~~~~~Wf~~~~~~~ 98 (246)
T 4f21_A 25 MNYELMEPA----KQARFCVIWLHGLGAD--GHDFVDIVNYFDVSLDEIRFIFPHADIIPVTINMGMQMRAWYDIKSLDA 98 (246)
T ss_dssp CCEEEECCS----SCCCEEEEEEEC--CC--CCCGGGGGGGCCSCCTTEEEEEECGGGSCTTTHHHHHHHSCTTCCCC--
T ss_pred cCceEeCCC----CcCCeEEEEEcCCCCC--HHHHHHHHHHhhhcCCCeEEEeCCCCccccccCCCCCcccccccccccc
Confidence 555678785 3456799999995543 2344444444432 367888887432110 011121110000
Q ss_pred ------CCcchHHHHHHHHHHHHH---cCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCC
Q 003363 647 ------VGSQDVNDVLTAIDHVID---MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI 717 (826)
Q Consensus 647 ------~~~~~~~D~~~~i~~l~~---~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~ 717 (826)
.-...+....+.++.+++ ...+|++||+|+|+|+||.+++.++.++|+.+++++..++.......
T Consensus 99 ~~~~~~~d~~~i~~~~~~i~~li~~~~~~gi~~~ri~l~GfSqGg~~a~~~~~~~~~~~a~~i~~sG~lp~~~~------ 172 (246)
T 4f21_A 99 NSLNRVVDVEGINSSIAKVNKLIDSQVNQGIASENIILAGFSQGGIIATYTAITSQRKLGGIMALSTYLPAWDN------ 172 (246)
T ss_dssp -CGGGGSCCC-CHHHHHHHHHHHHHHHHC-CCGGGEEEEEETTTTHHHHHHHTTCSSCCCEEEEESCCCTTHHH------
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHcCCChhcEEEEEeCchHHHHHHHHHhCccccccceehhhccCcccc------
Confidence 000112333333333332 23489999999999999999999999999999999998875421110
Q ss_pred CCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEe
Q 003363 718 PDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 797 (826)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 797 (826)
+.. ... ....++|+|++||+.|++||++.++++++.|++.|.++++..|
T Consensus 173 --------~~~-------------------~~~----~~~~~~Pvl~~HG~~D~vVp~~~~~~~~~~L~~~g~~v~~~~y 221 (246)
T 4f21_A 173 --------FKG-------------------KIT----SINKGLPILVCHGTDDQVLPEVLGHDLSDKLKVSGFANEYKHY 221 (246)
T ss_dssp --------HST-------------------TCC----GGGTTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred --------ccc-------------------ccc----ccccCCchhhcccCCCCccCHHHHHHHHHHHHHCCCCeEEEEE
Confidence 000 000 0113589999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 798 PNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 798 p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
|+.||.+. .+.+..+.+||++.|+
T Consensus 222 ~g~gH~i~-----~~~l~~~~~fL~k~l~ 245 (246)
T 4f21_A 222 VGMQHSVC-----MEEIKDISNFIAKTFK 245 (246)
T ss_dssp SSCCSSCC-----HHHHHHHHHHHHHHTT
T ss_pred CCCCCccC-----HHHHHHHHHHHHHHhC
Confidence 99999875 3567889999999886
|
| >3nwo_A PIP, proline iminopeptidase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, mycobac smegmatis; 1.90A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-17 Score=175.25 Aligned_cols=236 Identities=17% Similarity=0.240 Sum_probs=138.4
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHH-CCcEEEEECCCCCCCCchhhhhcCCCCCCcc
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~-~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~ 650 (826)
+|..+++....|.+ .+.+.+.||++||++.. ...|...+..|++ .||.|+++|+||.|.+.... +......
T Consensus 36 ~g~~l~y~~~G~~~--~~~~g~plvllHG~~~~--~~~w~~~~~~l~~~~~~~Via~D~rG~G~S~~~~----~~~~~~~ 107 (330)
T 3nwo_A 36 GDHETWVQVTTPEN--AQPHALPLIVLHGGPGM--AHNYVANIAALADETGRTVIHYDQVGCGNSTHLP----DAPADFW 107 (330)
T ss_dssp TTEEEEEEEECCSS--CCTTCCCEEEECCTTTC--CSGGGGGGGGHHHHHTCCEEEECCTTSTTSCCCT----TSCGGGC
T ss_pred cCcEEEEEEecCcc--CCCCCCcEEEECCCCCC--chhHHHHHHHhccccCcEEEEECCCCCCCCCCCC----CCccccc
Confidence 56778777766531 11112358889997765 3456666666765 69999999999954432100 0111112
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhc------------------
Q 003363 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV------------------ 712 (826)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~------------------ 712 (826)
..+++.+.+..+++. ++.+++.|+||||||.+++.+|.++|++++++|+.++........
T Consensus 108 ~~~~~a~dl~~ll~~--lg~~~~~lvGhSmGG~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (330)
T 3nwo_A 108 TPQLFVDEFHAVCTA--LGIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSPASMRLWSEAAGDLRAQLPAETRAAL 185 (330)
T ss_dssp CHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHTCCTTEEEEEEESCCSBHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cHHHHHHHHHHHHHH--cCCCceEEEecCHHHHHHHHHHHhCCccceEEEEecCCcchHHHHHHHHHHHHhcCHHHHHHH
Confidence 344444444444443 234689999999999999999999999999999887754321100
Q ss_pred ------cCCCCCCchh-hhhccCcCCccCCCCCChhhHHH----------H---------------hhcCcccccCCCCC
Q 003363 713 ------GTTDIPDWCY-VESYGSKGKDSFTESPSVEDLTR----------F---------------HSKSPISHISKVKT 760 (826)
Q Consensus 713 ------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~---------------~~~sp~~~~~~i~~ 760 (826)
.....+.+.. ...+...........+ ...... + ...+....+.+|++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 264 (330)
T 3nwo_A 186 DRHEAAGTITHPDYLQAAAEFYRRHVCRVVPTP-QDFADSVAQMEAEPTVYHTMNGPNEFHVVGTLGDWSVIDRLPDVTA 264 (330)
T ss_dssp HHHHHHTCTTSHHHHHHHHHHHHHHTCCSSSCC-HHHHHHHHHHHHSCHHHHHHTCSCSSSCCSGGGGCBCGGGGGGCCS
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHhhccccCCC-HHHHHHHHhhccchhhhhcccCchhhhhhccccCCchhhhcccCCC
Confidence 0000000000 0000000000000001 000000 0 01122345677899
Q ss_pred cEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 761 PTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 761 PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
|+|+++|++|..+| ..+.++.+.+. ..+++++|++||....++ ..++.+.+.+||+++
T Consensus 265 P~Lvi~G~~D~~~p-~~~~~~~~~ip----~~~~~~i~~~gH~~~~e~-p~~~~~~i~~FL~~~ 322 (330)
T 3nwo_A 265 PVLVIAGEHDEATP-KTWQPFVDHIP----DVRSHVFPGTSHCTHLEK-PEEFRAVVAQFLHQH 322 (330)
T ss_dssp CEEEEEETTCSSCH-HHHHHHHHHCS----SEEEEEETTCCTTHHHHS-HHHHHHHHHHHHHHH
T ss_pred CeEEEeeCCCccCh-HHHHHHHHhCC----CCcEEEeCCCCCchhhcC-HHHHHHHHHHHHHhc
Confidence 99999999999875 45566665554 489999999999876544 457889999999875
|
| >2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=173.10 Aligned_cols=217 Identities=17% Similarity=0.220 Sum_probs=135.2
Q ss_pred CcEEEEEcCCC-CCCCCccchHHH-HHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCC
Q 003363 592 DPLIVVLHGGP-HSVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (826)
Q Consensus 592 ~P~vv~~HGg~-~~~~~~~~~~~~-~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (826)
.|.||++||.+ +......|...+ ..|++. |.|+++|+||. |.+.. +.. ....++++.+.+..+++. ++
T Consensus 33 g~~vvllHG~~~~~~~~~~w~~~~~~~L~~~-~~vi~~D~~G~---G~S~~---~~~-~~~~~~~~a~dl~~~l~~--l~ 102 (286)
T 2puj_A 33 GETVIMLHGGGPGAGGWSNYYRNVGPFVDAG-YRVILKDSPGF---NKSDA---VVM-DEQRGLVNARAVKGLMDA--LD 102 (286)
T ss_dssp SSEEEEECCCSTTCCHHHHHTTTHHHHHHTT-CEEEEECCTTS---TTSCC---CCC-SSCHHHHHHHHHHHHHHH--TT
T ss_pred CCcEEEECCCCCCCCcHHHHHHHHHHHHhcc-CEEEEECCCCC---CCCCC---CCC-cCcCHHHHHHHHHHHHHH--hC
Confidence 36899999964 222234566667 778765 99999999994 44421 111 123566666666666665 34
Q ss_pred CCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCC------------CCCchhhhhccCc---CCccC
Q 003363 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD------------IPDWCYVESYGSK---GKDSF 734 (826)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~------------~~~~~~~~~~~~~---~~~~~ 734 (826)
.+++.|+||||||.+++.+|.++|++++++|+.+|............ .+.+.....+... .....
T Consensus 103 ~~~~~lvGhS~GG~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (286)
T 2puj_A 103 IDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLI 182 (286)
T ss_dssp CCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGGGC
T ss_pred CCceEEEEECHHHHHHHHHHHhChHhhheEEEECccccCCCcccccchhhHHHHHHHhhCCcHHHHHHHHHHHhcCCccC
Confidence 57899999999999999999999999999999987542100000000 0000000000000 00000
Q ss_pred CC----------CCChhhHHHHh---------hcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEE
Q 003363 735 TE----------SPSVEDLTRFH---------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 795 (826)
Q Consensus 735 ~~----------~~~~~~~~~~~---------~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 795 (826)
.. ....+....+. ..+....+.++++|+|+++|++|..+|+..++++.+.++. .+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~~~~~~~~----~~~~ 258 (286)
T 2puj_A 183 TEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDD----ARLH 258 (286)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHSSS----EEEE
T ss_pred CHHHHHHHHHHhhcCHHHHHHHHHHHhhhhccccchhhHHhhcCCCEEEEEECCCCccCHHHHHHHHHHCCC----CeEE
Confidence 00 00000001110 1122345678899999999999999999999888877753 7999
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 796 VFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 796 ~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+++++||...... ..++...+.+||++
T Consensus 259 ~i~~~gH~~~~e~-p~~~~~~i~~fl~~ 285 (286)
T 2puj_A 259 VFSKCGAWAQWEH-ADEFNRLVIDFLRH 285 (286)
T ss_dssp EESSCCSCHHHHT-HHHHHHHHHHHHHH
T ss_pred EeCCCCCCccccC-HHHHHHHHHHHHhc
Confidence 9999999865433 45788889999875
|
| >3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase fold, hydrolase; 2.00A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.4e-18 Score=176.32 Aligned_cols=219 Identities=11% Similarity=0.097 Sum_probs=140.9
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCc
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 672 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 672 (826)
|+||++||.+.. ...|...+..|++ ||.|+++|+||.+...... . .......+++..+.+..+++. ++.++
T Consensus 29 ~~vv~lHG~~~~--~~~~~~~~~~l~~-g~~v~~~d~~G~G~s~~~~---~-~~~~~~~~~~~~~~~~~~~~~--~~~~~ 99 (282)
T 3qvm_A 29 KTVLLAHGFGCD--QNMWRFMLPELEK-QFTVIVFDYVGSGQSDLES---F-STKRYSSLEGYAKDVEEILVA--LDLVN 99 (282)
T ss_dssp CEEEEECCTTCC--GGGGTTTHHHHHT-TSEEEECCCTTSTTSCGGG---C-CTTGGGSHHHHHHHHHHHHHH--TTCCS
T ss_pred CeEEEECCCCCC--cchHHHHHHHHhc-CceEEEEecCCCCCCCCCC---C-CccccccHHHHHHHHHHHHHH--cCCCc
Confidence 899999997655 4567777888877 9999999999955443221 1 011122466666666666665 34578
Q ss_pred EEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC----CCCCCch-hhhhccCc-------CCc-cCCCCCC
Q 003363 673 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT----TDIPDWC-YVESYGSK-------GKD-SFTESPS 739 (826)
Q Consensus 673 v~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~----~~~~~~~-~~~~~~~~-------~~~-~~~~~~~ 739 (826)
+.|+|||+||.+++.++.++|++++++|+.+|.......... ....... ........ ... .+.....
T Consensus 100 ~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (282)
T 3qvm_A 100 VSIIGHSVSSIIAGIASTHVGDRISDITMICPSPCFMNFPPDYVGGFERDDLEELINLMDKNYIGWANYLAPLVMGASHS 179 (282)
T ss_dssp EEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBSBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCTTSC
T ss_pred eEEEEecccHHHHHHHHHhCchhhheEEEecCcchhccCchhhhchhccccHHHHHHHHhcchhhHHHHHHhhccCCccc
Confidence 999999999999999999999999999999986542211000 0000000 00000000 000 0000000
Q ss_pred hhh-------------------HHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 003363 740 VED-------------------LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 800 (826)
Q Consensus 740 ~~~-------------------~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~ 800 (826)
... .......+....+.++++|+|+++|++|..+|++.+..+.+.+.+ .++++++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~~~~~~~ 255 (282)
T 3qvm_A 180 SELIGELSGSFCTTDPIVAKTFAKATFFSDYRSLLEDISTPALIFQSAKDSLASPEVGQYMAENIPN----SQLELIQAE 255 (282)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHSCBCGGGGGGCCSCEEEEEEEECTTCCHHHHHHHHHHSSS----EEEEEEEEE
T ss_pred hhhHHHHHHHHhcCCcHHHHHHHHHHhcccHHHHHhcCCCCeEEEEeCCCCcCCHHHHHHHHHhCCC----CcEEEecCC
Confidence 000 011112233456788899999999999999999999888887754 799999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 801 VHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 801 ~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
+|.+.... ..++.+.|.+||+++.
T Consensus 256 gH~~~~~~-~~~~~~~i~~fl~~~~ 279 (282)
T 3qvm_A 256 GHCLHMTD-AGLITPLLIHFIQNNQ 279 (282)
T ss_dssp SSCHHHHC-HHHHHHHHHHHHHHC-
T ss_pred CCcccccC-HHHHHHHHHHHHHhcC
Confidence 99875433 5578899999998753
|
| >4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5.6e-18 Score=174.94 Aligned_cols=221 Identities=12% Similarity=0.048 Sum_probs=139.0
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
..|+||++||.+.. ...|...+..|++ ||.|+++|+||.+..... .. .......++++.+.+..+++. ++.
T Consensus 19 ~~p~vv~~HG~~~~--~~~~~~~~~~l~~-g~~v~~~D~~G~G~S~~~---~~-~~~~~~~~~~~~~~~~~~~~~--~~~ 89 (269)
T 4dnp_A 19 GERVLVLAHGFGTD--QSAWNRILPFFLR-DYRVVLYDLVCAGSVNPD---FF-DFRRYTTLDPYVDDLLHILDA--LGI 89 (269)
T ss_dssp CSSEEEEECCTTCC--GGGGTTTGGGGTT-TCEEEEECCTTSTTSCGG---GC-CTTTCSSSHHHHHHHHHHHHH--TTC
T ss_pred CCCEEEEEeCCCCc--HHHHHHHHHHHhC-CcEEEEEcCCCCCCCCCC---CC-CccccCcHHHHHHHHHHHHHh--cCC
Confidence 45899999997654 4567677777877 999999999995443221 11 111122455655555555555 345
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCC-C--Cch-hhhhccCc-------CCccCCCCCC
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI-P--DWC-YVESYGSK-------GKDSFTESPS 739 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~-~--~~~-~~~~~~~~-------~~~~~~~~~~ 739 (826)
+++.|+|||+||.+++.++.++|++++++|+.+|............. . ... ........ ..........
T Consensus 90 ~~~~l~GhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
T 4dnp_A 90 DCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPRFLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGADV 169 (269)
T ss_dssp CSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCCBCBTTBCCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCSSC
T ss_pred CeEEEEccCHHHHHHHHHHHhCcHhhceeEEeCCCCCCCChHHhccccchHHHHHHHHhccccHHHHHHHhhhhhccCCC
Confidence 78999999999999999999999999999999986432110000000 0 000 00000000 0000000000
Q ss_pred hh-------------------hHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 003363 740 VE-------------------DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 800 (826)
Q Consensus 740 ~~-------------------~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~ 800 (826)
.+ ....+...+....+.++++|+|+++|++|..+|++.+..+.+.+... +++++++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 246 (269)
T 4dnp_A 170 PAAVREFSRTLFNMRPDITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHLGGK---NTVHWLNIE 246 (269)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHTCCCGGGGGGCCSCEEEEEEESBTTBCHHHHHHHHHHSSSC---EEEEEEEEE
T ss_pred hhHHHHHHHHHHccCcchhhhHhhhhcchhhHhhhccccCCEEEEecCCCcccCHHHHHHHHHhCCCC---ceEEEeCCC
Confidence 00 01111223445567789999999999999999999998888877542 799999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 801 VHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 801 ~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
+|..... ...++.+.|.+||+++
T Consensus 247 gH~~~~~-~p~~~~~~i~~fl~~~ 269 (269)
T 4dnp_A 247 GHLPHLS-APTLLAQELRRALSHR 269 (269)
T ss_dssp SSCHHHH-CHHHHHHHHHHHHC--
T ss_pred CCCcccc-CHHHHHHHHHHHHhhC
Confidence 9986543 3457788888998763
|
| >3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-17 Score=170.10 Aligned_cols=211 Identities=17% Similarity=0.146 Sum_probs=137.7
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCc
Q 003363 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~ 649 (826)
.-+|..+++..+.|+ +.|+||++||.+.. ...|...+..|+++||.|+++|+||.+..... .....
T Consensus 10 ~~~g~~l~~~~~g~~------~~~~vv~~hG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~------~~~~~ 75 (286)
T 3qit_A 10 EFGGNQICLCSWGSP------EHPVVLCIHGILEQ--GLAWQEVALPLAAQGYRVVAPDLFGHGRSSHL------EMVTS 75 (286)
T ss_dssp EETTEEEEEEEESCT------TSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC------SSGGG
T ss_pred ecCCceEEEeecCCC------CCCEEEEECCCCcc--cchHHHHHHHhhhcCeEEEEECCCCCCCCCCC------CCCCC
Confidence 346778887777542 45789999998765 55788889999999999999999995443211 11123
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhc----------------c
Q 003363 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV----------------G 713 (826)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~----------------~ 713 (826)
...+++.+.+..+++. ++.+++.++|||+||.+++.++.++|++++++|+.+|........ .
T Consensus 76 ~~~~~~~~~~~~~~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (286)
T 3qit_A 76 YSSLTFLAQIDRVIQE--LPDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKESAVNQLTTCLDYLSS 153 (286)
T ss_dssp CSHHHHHHHHHHHHHH--SCSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCC---CCHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHh--cCCCCEEEEEeCHHHHHHHHHHHhChhhccEEEEecCCCCCccccchhhhHHHHHHHHHHhc
Confidence 3566777777777666 345789999999999999999999999999999999865432110 0
Q ss_pred CCC---CCCchhhhhccCcCCccCCCCCChhhHHHH---------------------------------hhcCcccccCC
Q 003363 714 TTD---IPDWCYVESYGSKGKDSFTESPSVEDLTRF---------------------------------HSKSPISHISK 757 (826)
Q Consensus 714 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~sp~~~~~~ 757 (826)
... ........... .... .....+....+ ...+....+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (286)
T 3qit_A 154 TPQHPIFPDVATAASRL---RQAI-PSLSEEFSYILAQRITQPNQGGVRWSWDAIIRTRSILGLNNLPGGRSQYLEMLKS 229 (286)
T ss_dssp CCCCCCBSSHHHHHHHH---HHHS-TTSCHHHHHHHHHHTEEEETTEEEECSCGGGGGHHHHTTTSCTTHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHh---hcCC-cccCHHHHHHHhhccccccccceeeeechhhhccccccccccccchhHHHHHHhc
Confidence 000 00000000000 0000 00000000000 11112233467
Q ss_pred CCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCC
Q 003363 758 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 805 (826)
Q Consensus 758 i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 805 (826)
+++|+|+++|++|..+|++....+.+.+.. ++++++++ ||...
T Consensus 230 i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~~~~~g-gH~~~ 272 (286)
T 3qit_A 230 IQVPTTLVYGDSSKLNRPEDLQQQKMTMTQ----AKRVFLSG-GHNLH 272 (286)
T ss_dssp CCSCEEEEEETTCCSSCHHHHHHHHHHSTT----SEEEEESS-SSCHH
T ss_pred cCCCeEEEEeCCCcccCHHHHHHHHHHCCC----CeEEEeeC-CchHh
Confidence 899999999999999999998888877754 68999999 99765
|
| >2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.3e-17 Score=170.91 Aligned_cols=229 Identities=17% Similarity=0.141 Sum_probs=141.7
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCc
Q 003363 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~ 649 (826)
..++..++.+... .+..|+||++||++.. ...|...+..|++ ||.|+++|+||.+|. +.. ....
T Consensus 51 ~~~~~~~~~~~~g------~~~~~~vv~lHG~~~~--~~~~~~~~~~L~~-g~~vi~~D~~G~gG~--s~~-----~~~~ 114 (306)
T 2r11_A 51 STRFGQTHVIASG------PEDAPPLVLLHGALFS--STMWYPNIADWSS-KYRTYAVDIIGDKNK--SIP-----ENVS 114 (306)
T ss_dssp CCTTEEEEEEEES------CTTSCEEEEECCTTTC--GGGGTTTHHHHHH-HSEEEEECCTTSSSS--CEE-----CSCC
T ss_pred ecCCceEEEEeeC------CCCCCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEecCCCCCCC--CCC-----CCCC
Confidence 3345566555432 2345889999998755 4457777788887 999999999996322 211 1112
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhcc------CCCC-CCc--
Q 003363 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG------TTDI-PDW-- 720 (826)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~------~~~~-~~~-- 720 (826)
...+++.+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.+|......... .... ..+
T Consensus 115 ~~~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (306)
T 2r11_A 115 GTRTDYANWLLDVFDN--LGIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPAETFLPFHHDFYKYALGLTASNGVE 192 (306)
T ss_dssp CCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSSBTSCCCHHHHHHHHTTTSTTHHH
T ss_pred CCHHHHHHHHHHHHHh--cCCCceeEEEECHHHHHHHHHHHhCccceeeEEEEcCccccCcccHHHHHHHhHHHHHHHHH
Confidence 3466666666666665 3457899999999999999999999999999999998765311000 0000 000
Q ss_pred hhhhhccCcCCccCCCCCC---hhhHHH---------------HhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHH
Q 003363 721 CYVESYGSKGKDSFTESPS---VEDLTR---------------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 782 (826)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~---~~~~~~---------------~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~ 782 (826)
.+...+... . ....+. .+.... .........+.++++|+|+++|++|..+|++.+.+++
T Consensus 193 ~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~ 269 (306)
T 2r11_A 193 TFLNWMMND-Q--NVLHPIFVKQFKAGVMWQDGSRNPNPNADGFPYVFTDEELRSARVPILLLLGEHEVIYDPHSALHRA 269 (306)
T ss_dssp HHHHHHTTT-C--CCSCHHHHHHHHHHHHCCSSSCCCCCCTTSSSCBCCHHHHHTCCSCEEEEEETTCCSSCHHHHHHHH
T ss_pred HHHHHhhCC-c--cccccccccccHHHHHHHHhhhhhhhhccCCCCCCCHHHHhcCCCCEEEEEeCCCcccCHHHHHHHH
Confidence 000000000 0 000000 000000 0001122345678999999999999999998887666
Q ss_pred HHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 783 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 783 ~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+.+. ..+++++++++||.+.... ..++.+.|.+||++
T Consensus 270 ~~~~---~~~~~~~~~~~gH~~~~e~-p~~~~~~i~~fl~~ 306 (306)
T 2r11_A 270 SSFV---PDIEAEVIKNAGHVLSMEQ-PTYVNERVMRFFNA 306 (306)
T ss_dssp HHHS---TTCEEEEETTCCTTHHHHS-HHHHHHHHHHHHC-
T ss_pred HHHC---CCCEEEEeCCCCCCCcccC-HHHHHHHHHHHHhC
Confidence 5442 2479999999999765433 45778888888853
|
| >2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-17 Score=171.53 Aligned_cols=228 Identities=16% Similarity=0.216 Sum_probs=142.5
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcch
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~ 651 (826)
+|..+++..+.|. +.+.|+||++||.+.. ...|...+..|++ +|.|+++|+||. |.+... .....
T Consensus 10 ~g~~l~y~~~g~~----~~~~~~vvllHG~~~~--~~~~~~~~~~L~~-~~~vi~~D~~G~---G~S~~~-----~~~~~ 74 (266)
T 2xua_A 10 NGTELHYRIDGER----HGNAPWIVLSNSLGTD--LSMWAPQVAALSK-HFRVLRYDTRGH---GHSEAP-----KGPYT 74 (266)
T ss_dssp SSSEEEEEEESCS----SSCCCEEEEECCTTCC--GGGGGGGHHHHHT-TSEEEEECCTTS---TTSCCC-----SSCCC
T ss_pred CCEEEEEEEcCCc----cCCCCeEEEecCccCC--HHHHHHHHHHHhc-CeEEEEecCCCC---CCCCCC-----CCCCC
Confidence 5667776665432 1125889999996654 4567777888865 599999999994 443211 11234
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh---hcc------CCCCCCch-
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL---MVG------TTDIPDWC- 721 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~---~~~------~~~~~~~~- 721 (826)
++++.+.+..+++. +..+++.|+||||||.+++.+|.++|++++++|+.++...... ... ........
T Consensus 75 ~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (266)
T 2xua_A 75 IEQLTGDVLGLMDT--LKIARANFCGLSMGGLTGVALAARHADRIERVALCNTAARIGSPEVWVPRAVKARTEGMHALAD 152 (266)
T ss_dssp HHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCSCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHh--cCCCceEEEEECHHHHHHHHHHHhChhhhheeEEecCCCCCCchHHHHHHHHHHHhcChHHHHH
Confidence 55555555555554 3446899999999999999999999999999999887542100 000 00000000
Q ss_pred -hhhh-ccCcC-----------CccCCCCCChhh----HHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHH
Q 003363 722 -YVES-YGSKG-----------KDSFTESPSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARA 784 (826)
Q Consensus 722 -~~~~-~~~~~-----------~~~~~~~~~~~~----~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~ 784 (826)
.... +.... ...+.. ..... ...+...+....+.++++|+|+++|++|..+|++.++.+.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~ 231 (266)
T 2xua_A 153 AVLPRWFTADYMEREPVVLAMIRDVFVH-TDKEGYASNCEAIDAADLRPEAPGIKVPALVISGTHDLAATPAQGRELAQA 231 (266)
T ss_dssp HHHHHHSCHHHHHHCHHHHHHHHHHHHT-SCHHHHHHHHHHHHHCCCGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHH
T ss_pred HHHHHHcCcccccCCHHHHHHHHHHHhh-CCHHHHHHHHHHHhccCchhhhccCCCCEEEEEcCCCCcCCHHHHHHHHHh
Confidence 0000 00000 000000 00000 011112233455778999999999999999999998888877
Q ss_pred HHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 785 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 785 l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+.. .++++++ +||...... ..++.+.+.+||.+
T Consensus 232 ~~~----~~~~~~~-~gH~~~~e~-p~~~~~~i~~fl~~ 264 (266)
T 2xua_A 232 IAG----ARYVELD-ASHISNIER-ADAFTKTVVDFLTE 264 (266)
T ss_dssp STT----CEEEEES-CCSSHHHHT-HHHHHHHHHHHHTC
T ss_pred CCC----CEEEEec-CCCCchhcC-HHHHHHHHHHHHHh
Confidence 754 6899999 999875443 44788889999864
|
| >1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A 1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A* 1xqx_A* 1xqy_A 1xqv_A | Back alignment and structure |
|---|
Probab=99.73 E-value=7.8e-18 Score=177.05 Aligned_cols=232 Identities=16% Similarity=0.142 Sum_probs=136.0
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcch
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~ 651 (826)
+|..++...+.+ +.+.|.||++||+++.. ..|......++++||.|+++|+||.| .+... . .....
T Consensus 13 ~g~~l~~~~~g~-----~~~~~~vvllHG~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G~G---~S~~~---~-~~~~~ 78 (293)
T 1mtz_A 13 NGIYIYYKLCKA-----PEEKAKLMTMHGGPGMS--HDYLLSLRDMTKEGITVLFYDQFGCG---RSEEP---D-QSKFT 78 (293)
T ss_dssp TTEEEEEEEECC-----SSCSEEEEEECCTTTCC--SGGGGGGGGGGGGTEEEEEECCTTST---TSCCC---C-GGGCS
T ss_pred CCEEEEEEEECC-----CCCCCeEEEEeCCCCcc--hhHHHHHHHHHhcCcEEEEecCCCCc---cCCCC---C-CCccc
Confidence 455565444322 12237799999976542 23333344456789999999999954 33211 1 11123
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC-----CCCCCc--hhh-
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-----TDIPDW--CYV- 723 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~-----~~~~~~--~~~- 723 (826)
++++.+.+..+++.- .+.+++.|+||||||.+++.+|.++|++++++|+.+|.......... ...+.. ...
T Consensus 79 ~~~~~~dl~~~~~~l-~~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (293)
T 1mtz_A 79 IDYGVEEAEALRSKL-FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEMNRLIDELPAKYRDAIK 157 (293)
T ss_dssp HHHHHHHHHHHHHHH-HTTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-cCCCcEEEEEecHHHHHHHHHHHhCchhhheEEecCCccChHHHHHHHHHHHHhcCHHHHHHHH
Confidence 444444444444431 02368999999999999999999999999999999987653211000 000000 000
Q ss_pred -----------------hhccCcCCccCCCCCChhhHHH---------Hh---------------hcCcccccCCCCCcE
Q 003363 724 -----------------ESYGSKGKDSFTESPSVEDLTR---------FH---------------SKSPISHISKVKTPT 762 (826)
Q Consensus 724 -----------------~~~~~~~~~~~~~~~~~~~~~~---------~~---------------~~sp~~~~~~i~~Pv 762 (826)
..+...........+. ..... +. ..+....+.++++|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~ 236 (293)
T 1mtz_A 158 KYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPP-EVLKSLEYAERRNVYRIMNGPNEFTITGTIKDWDITDKISAIKIPT 236 (293)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHTSCSSCCCH-HHHHHHHHHHHSSHHHHHTCSBTTBCCSTTTTCBCTTTGGGCCSCE
T ss_pred HhhccCCcChHHHHHHHHHHHHhhcccccCchH-HHHHhHhhhccchhhhhccCcceecccccccCCChhhhhccCCCCE
Confidence 0000000000001110 00000 00 111223456789999
Q ss_pred EEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 763 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 763 Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
|+++|++| .+++..+.++.+.+.. .++++++++||..... ...++...+.+||.++|
T Consensus 237 lii~G~~D-~~~~~~~~~~~~~~~~----~~~~~~~~~gH~~~~e-~p~~~~~~i~~fl~~~l 293 (293)
T 1mtz_A 237 LITVGEYD-EVTPNVARVIHEKIAG----SELHVFRDCSHLTMWE-DREGYNKLLSDFILKHL 293 (293)
T ss_dssp EEEEETTC-SSCHHHHHHHHHHSTT----CEEEEETTCCSCHHHH-SHHHHHHHHHHHHHTCC
T ss_pred EEEeeCCC-CCCHHHHHHHHHhCCC----ceEEEeCCCCCCcccc-CHHHHHHHHHHHHHhcC
Confidence 99999999 7788877777776643 7899999999987544 34578889999998764
|
| >1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-17 Score=170.75 Aligned_cols=232 Identities=14% Similarity=0.113 Sum_probs=144.7
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH---HHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
.+.++..+ |.|++ .|+||++||++.......|.. ..+.+++.||+|+++|++++..+.. +.. . ..+
T Consensus 21 ~~~~~~~~-~~P~~------~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~pd~~~~~~~~~-~~~--~-~~~ 89 (280)
T 1r88_A 21 MGRDIPVA-FLAGG------PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAYSMYTN-WEQ--D-GSK 89 (280)
T ss_dssp TTEEEEEE-EECCS------SSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCCTTSTTSB-CSS--C-TTC
T ss_pred cCCcceEE-EeCCC------CCEEEEECCCCCCCChhhhhhcccHHHHHhcCCeEEEEECCCCCCccCC-CCC--C-CCC
Confidence 46778777 77763 289999999854322334443 4566778899999999987544321 100 0 001
Q ss_pred cchHHH--HHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhc
Q 003363 649 SQDVND--VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 726 (826)
Q Consensus 649 ~~~~~D--~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 726 (826)
...+ ..+.+.++.++..+++++++|+|+||||++++.++.++|++|+++++.+|..++........+.. .....
T Consensus 90 --~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~~~~~~~~--~~~~~ 165 (280)
T 1r88_A 90 --QWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTNGAIAA--GMQQF 165 (280)
T ss_dssp --BHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSHHHHHHHHH--HHHHH
T ss_pred --cHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCcCCccchhhHHH--Hhhhc
Confidence 1212 12334444444457888999999999999999999999999999999999876432110000000 00000
Q ss_pred cCcCCccCCCCCChhhHHHHhhcCcccccCCC---CCcEEEEE----eCCCCC-------CCcHHHHHHHHHHHhCC-CC
Q 003363 727 GSKGKDSFTESPSVEDLTRFHSKSPISHISKV---KTPTIFLL----GAQDLR-------VPVSNGLQYARALREKG-VE 791 (826)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i---~~PvLii~----G~~D~~-------vp~~~~~~~~~~l~~~g-~~ 791 (826)
+......+.+.+ ....+...+|...++++ .+|+++.| |+.|.. ++.+++++++++|++.| ++
T Consensus 166 ~~~~~~~~~g~~---~~~~~~~~~p~~~~~~~~~~~~pv~i~~~~~~G~~D~~~~~~~~~~~~~~~~~~~~~L~~~g~~~ 242 (280)
T 1r88_A 166 GGVDTNGMWGAP---QLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGNSRMFYNQYRSVGGHN 242 (280)
T ss_dssp HCCCTHHHHCCG---GGSTTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHHHHHHHHHHHHTTCCS
T ss_pred cccchhhhcCCC---chhhhHhcCHHHHHHhhhccCCeEEEEeccCCCCCCcccccchhHHHHHHHHHHHHHHHHCCCcc
Confidence 000000000111 01234455666655544 58999999 999984 68899999999999999 99
Q ss_pred EEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 792 TKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 792 ~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
+++.++++++|.+.. ....+...+.||.+-
T Consensus 243 ~~~~~~~~g~H~~~~---w~~~l~~~l~~~~~~ 272 (280)
T 1r88_A 243 GHFDFPASGDNGWGS---WAPQLGAMSGDIVGA 272 (280)
T ss_dssp EEEECCSSCCSSHHH---HHHHHHHHHHHHHHH
T ss_pred eEEEecCCCCcChhH---HHHHHHHHHHHHHHH
Confidence 999999888997632 123344555565543
|
| >1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-17 Score=171.84 Aligned_cols=215 Identities=16% Similarity=0.214 Sum_probs=133.0
Q ss_pred CcEEEEEcCCCCC-CCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 592 DPLIVVLHGGPHS-VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 592 ~P~vv~~HGg~~~-~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
.|.||++||.+.. .....|...+..| +.||.|+++|+||. |.+.. +.. ....+++..+.+..+++. ++.
T Consensus 25 g~~vvllHG~~~~~~~~~~w~~~~~~L-~~~~~vi~~Dl~G~---G~S~~---~~~-~~~~~~~~a~dl~~~l~~--l~~ 94 (282)
T 1iup_A 25 GQPVILIHGSGPGVSAYANWRLTIPAL-SKFYRVIAPDMVGF---GFTDR---PEN-YNYSKDSWVDHIIGIMDA--LEI 94 (282)
T ss_dssp SSEEEEECCCCTTCCHHHHHTTTHHHH-TTTSEEEEECCTTS---TTSCC---CTT-CCCCHHHHHHHHHHHHHH--TTC
T ss_pred CCeEEEECCCCCCccHHHHHHHHHHhh-ccCCEEEEECCCCC---CCCCC---CCC-CCCCHHHHHHHHHHHHHH--hCC
Confidence 3679999995432 2122455566666 67899999999994 44321 110 123456666655555555 345
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchh-------hhccCCCCCCchhh----hhccCcC-------Cc
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-------LMVGTTDIPDWCYV----ESYGSKG-------KD 732 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~-------~~~~~~~~~~~~~~----~~~~~~~-------~~ 732 (826)
+++.|+||||||.+++.+|.++|++++++|+.+|..... ..... .+..... ..+.... ..
T Consensus 95 ~~~~lvGhS~GG~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (282)
T 1iup_A 95 EKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGY--TPSIENMRNLLDIFAYDRSLVTDELAR 172 (282)
T ss_dssp CSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESCCCSCCCCCHHHHHHHTC--CSCHHHHHHHHHHHCSSGGGCCHHHHH
T ss_pred CceEEEEECHhHHHHHHHHHHChHHHHHHHeeCCccCCCCCCHHHHHHhcC--CCcHHHHHHHHHHhhcCcccCCHHHHH
Confidence 789999999999999999999999999999998754210 00000 0000000 0000000 00
Q ss_pred -cC--CCCCCh-hhHHHHh--------h--cCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeC
Q 003363 733 -SF--TESPSV-EDLTRFH--------S--KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 798 (826)
Q Consensus 733 -~~--~~~~~~-~~~~~~~--------~--~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p 798 (826)
.+ ...+.. .....+. . ......+.++++|+|+++|++|..+|++.+.++.+.+.. .++++++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~p~~~~~~~~~~~~~----~~~~~i~ 248 (282)
T 1iup_A 173 LRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSSLRLGELIDR----AQLHVFG 248 (282)
T ss_dssp HHHHHHTSTTHHHHHHHHSCSSTHHHHHHHCCCHHHHTTCCSCEEEEEETTCSSSCHHHHHHHHHHCTT----EEEEEES
T ss_pred HHHhhccChHHHHHHHHHHhccccccccccccchhhhhhcCCCEEEEecCCCCCCCHHHHHHHHHhCCC----CeEEEEC
Confidence 00 000100 0000000 0 001145678999999999999999999998888877754 7999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 799 NDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 799 ~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
++||...... ..++.+.+.+|+++
T Consensus 249 ~~gH~~~~e~-p~~~~~~i~~fl~~ 272 (282)
T 1iup_A 249 RCGHWTQIEQ-TDRFNRLVVEFFNE 272 (282)
T ss_dssp SCCSCHHHHS-HHHHHHHHHHHHHT
T ss_pred CCCCCccccC-HHHHHHHHHHHHhc
Confidence 9999865433 45788889999975
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-16 Score=197.29 Aligned_cols=339 Identities=6% Similarity=-0.019 Sum_probs=201.1
Q ss_pred EEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCC--CC
Q 003363 100 TFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE--NE 177 (826)
Q Consensus 100 ~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~--~~ 177 (826)
..|.+|| ++|+|... ..||++++ .+++.++|+..+ ..+..++|||||++|||.+... ++
T Consensus 18 ~~~~~S~--~~iaf~~~----------~~l~~~~~--~gg~~~~lt~~~-----~~v~~~~~SPDG~~la~~s~~~~~~~ 78 (1045)
T 1k32_A 18 LNPDIHG--DRIIFVCC----------DDLWEHDL--KSGSTRKIVSNL-----GVINNARFFPDGRKIAIRVMRGSSLN 78 (1045)
T ss_dssp EEEEEET--TEEEEEET----------TEEEEEET--TTCCEEEEECSS-----SEEEEEEECTTSSEEEEEEEESTTCC
T ss_pred eCcEEeC--CEEEEEEC----------CcEEEEEC--CCCcEEEeeeCC-----CcccCeEECCCCCEEEEEEeeccCCC
Confidence 3455564 58999753 36888876 455677887665 5689999999999999998652 24
Q ss_pred CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC-----CCCccCCCCCCCCC-----
Q 003363 178 SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS-----KPTFSLGSTKGGSS----- 246 (826)
Q Consensus 178 ~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~-----~~~~~~~~~~~~~~----- 246 (826)
..+++++. .+++.++++.......+.. -....++|||||+ |+|.+...... ...++...+.....
T Consensus 79 ~~~i~~~d~~~g~~~~lt~~~~~~~~~~---~~~~~~~~SpDg~-ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~ 154 (1045)
T 1k32_A 79 TADLYFYNGENGEIKRITYFSGKSTGRR---MFTDVAGFDPDGN-LIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPA 154 (1045)
T ss_dssp EEEEEEEETTTTEEEECCCCCEEEETTE---ECSEEEEECTTCC-EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSC
T ss_pred CCeEEEEECCCCCeEEcccCCCcccccc---cccccccCCCCCE-EEEEECCcCCCcccceEEEEECCCCCeEEecCCCc
Confidence 45677666 4555554443221110000 0015789999998 88877543111 11111100000000
Q ss_pred ---------------------C-----------------------ccCCCCCCcceeecCCCccCC--CccCceEEEEEc
Q 003363 247 ---------------------D-----------------------KDCNSWKGQGDWEEDWGETYA--GKRQPSLFVINI 280 (826)
Q Consensus 247 ---------------------~-----------------------~~~~~~~~~~~~~~d~g~~~~--~~~~~~l~v~d~ 280 (826)
+ ..+........|+++ .-.+. ..+...||.++.
T Consensus 155 ~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~ 233 (1045)
T 1k32_A 155 THILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDL 233 (1045)
T ss_dssp SEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEET
T ss_pred ceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeC
Confidence 0 000001111223333 11111 113457888888
Q ss_pred cCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCccee-----------------------------eeeeee-
Q 003363 281 NSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK-----------------------------LGIKYC- 330 (826)
Q Consensus 281 ~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~-----------------------------~g~~~~- 330 (826)
++++.+.++ ... ....++|||||+. |+|.... .-.. ....+.
T Consensus 234 ~g~~~~~l~--~~~-~~~~~~~SpDG~~----la~~~~~-~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~ 305 (1045)
T 1k32_A 234 DGKDLRKHT--SFT-DYYPRHLNTDGRR----ILFSKGG-SIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSP 305 (1045)
T ss_dssp TSCSCEECC--CCC-SSCEEEEEESSSC----EEEEETT-EEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEE
T ss_pred CCCcceEec--CCC-CcceeeEcCCCCE----EEEEeCC-EEEEecCCceEeeeeccCcccccccccccccccceeeecC
Confidence 888888873 222 3456799999998 8886421 0000 000110
Q ss_pred cc-------CCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCc-cccCceecCCCCEEEEEeccCCCCCCCCcc
Q 003363 331 YN-------RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS-SAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 402 (826)
Q Consensus 331 ~~-------~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~-~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~ 402 (826)
.+ ....|+.+++ .++..++++.+.. ....+.|| ||+.|+|.+.+
T Consensus 306 pdG~~la~~~~~~i~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~---------- 357 (1045)
T 1k32_A 306 LDGDLIAFVSRGQAFIQDV-----------------SGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTRE---------- 357 (1045)
T ss_dssp CGGGCEEEEETTEEEEECT-----------------TSSBEEECSCCSCEEEEEECSS-SEEEEEEEETT----------
T ss_pred CCCCEEEEEEcCEEEEEcC-----------------CCCceEEccCCCcceEEeeeEc-CCCeEEEEECC----------
Confidence 00 0224455554 5666777777666 78889999 99999998852
Q ss_pred cceEE-EEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003363 403 TDSLH-RIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (826)
Q Consensus 403 ~~~l~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~ 481 (826)
.+|| ++|+.++....++ ... ..+..++|||||+.|++... ...|+.+|+.+|+.+
T Consensus 358 -~~l~~~~d~~~~~~~~l~-~~~-------------------~~~~~~~~SpDG~~la~~~~---~~~v~~~d~~tg~~~ 413 (1045)
T 1k32_A 358 -GDFLGIYDYRTGKAEKFE-ENL-------------------GNVFAMGVDRNGKFAVVAND---RFEIMTVDLETGKPT 413 (1045)
T ss_dssp -EEEEEEEETTTCCEEECC-CCC-------------------CSEEEEEECTTSSEEEEEET---TSEEEEEETTTCCEE
T ss_pred -CceEEEEECCCCCceEec-CCc-------------------cceeeeEECCCCCEEEEECC---CCeEEEEECCCCceE
Confidence 4699 9998876544333 110 12336789999998887643 347899999999999
Q ss_pred EecC-CCCCeeeEEEeecCCEEEEEEeCC------CCCCeEEEEeecc
Q 003363 482 RITP-AESNFSWSLLTLDGDNIIAVSSSP------VDVPQVKYGYFVD 522 (826)
Q Consensus 482 ~lt~-~~~~~~~~~~s~dg~~l~~~~s~~------~~p~~l~~~~~~~ 522 (826)
.+.. ....+....|+|||+.+++..... ..+..|++.++.+
T Consensus 414 ~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 414 VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG 461 (1045)
T ss_dssp EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred EeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence 8874 333445678999999998887654 4456788888654
|
| >3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-17 Score=171.93 Aligned_cols=218 Identities=14% Similarity=0.115 Sum_probs=133.9
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHH-CCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~-~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (826)
+.|+||++||.+.. ...|...+..|++ +||.|+++|+||.+..... . . ...+++.+.+..+++.. .+
T Consensus 20 ~~~~vv~lhG~~~~--~~~~~~~~~~l~~~~g~~v~~~d~~G~G~s~~~---~---~---~~~~~~~~~~~~~l~~~-~~ 87 (272)
T 3fsg_A 20 SGTPIIFLHGLSLD--KQSTCLFFEPLSNVGQYQRIYLDLPGMGNSDPI---S---P---STSDNVLETLIEAIEEI-IG 87 (272)
T ss_dssp CSSEEEEECCTTCC--HHHHHHHHTTSTTSTTSEEEEECCTTSTTCCCC---S---S---CSHHHHHHHHHHHHHHH-HT
T ss_pred CCCeEEEEeCCCCc--HHHHHHHHHHHhccCceEEEEecCCCCCCCCCC---C---C---CCHHHHHHHHHHHHHHH-hC
Confidence 34789999997654 4456666767776 7999999999995443211 1 1 33444444443333331 23
Q ss_pred CCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccC----cCCccC---CCCCChhh
Q 003363 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS----KGKDSF---TESPSVED 742 (826)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~ 742 (826)
.+++.|+|||+||.+++.++.++|++++++|+.+|.....................+.. .....+ ........
T Consensus 88 ~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (272)
T 3fsg_A 88 ARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVITADHSKRLTGKHINILEEDINPVENKEYFADFLSMNVIINNQA 167 (272)
T ss_dssp TCCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECSSCCGGGCCCCCCCCEECSCCCCCTTGGGHHHHHHHCSEESHHH
T ss_pred CCcEEEEEeCchHHHHHHHHHhChHhhheeEEECcccccCccccccccchhhhhhhhhcccCHHHHHHHHHHhccCCCch
Confidence 47899999999999999999999999999999988753221111000000000000000 000000 00000000
Q ss_pred HHH-------------------Hhhc-----CcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeC
Q 003363 743 LTR-------------------FHSK-----SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 798 (826)
Q Consensus 743 ~~~-------------------~~~~-----sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p 798 (826)
... +... .+...+.++++|+|+++|++|..+|++.+.++.+.++ .+++++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~ 243 (272)
T 3fsg_A 168 WHDYQNLIIPGLQKEDKTFIDQLQNNYSFTFEEKLKNINYQFPFKIMVGRNDQVVGYQEQLKLINHNE----NGEIVLLN 243 (272)
T ss_dssp HHHHHHHTHHHHHHCCHHHHHHHTTSCSCTTHHHHTTCCCSSCEEEEEETTCTTTCSHHHHHHHTTCT----TEEEEEES
T ss_pred hHHHHHHhhhhhhhccHHHHHHHhhhcCCChhhhhhhccCCCCEEEEEeCCCCcCCHHHHHHHHHhcC----CCeEEEec
Confidence 000 0000 0111347789999999999999999999888776664 48999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 799 NDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 799 ~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
++||.+... ...++.+.+.+||++..
T Consensus 244 ~~gH~~~~~-~~~~~~~~i~~fl~~~~ 269 (272)
T 3fsg_A 244 RTGHNLMID-QREAVGFHFDLFLDELN 269 (272)
T ss_dssp SCCSSHHHH-THHHHHHHHHHHHHHHH
T ss_pred CCCCCchhc-CHHHHHHHHHHHHHHhh
Confidence 999987643 34578889999998753
|
| >1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase); PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.72 E-value=7.5e-17 Score=168.87 Aligned_cols=231 Identities=15% Similarity=0.133 Sum_probs=137.7
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCC-CCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcc
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~-~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~ 650 (826)
+|..++.....+ ...|+||++||.+ +......|...+..|++. |.|+++|+||.| .+... .. ...
T Consensus 15 ~g~~l~y~~~g~------~g~p~vvllHG~~~~~~~~~~~~~~~~~L~~~-~~vi~~D~~G~G---~S~~~---~~-~~~ 80 (285)
T 1c4x_A 15 GTLASHALVAGD------PQSPAVVLLHGAGPGAHAASNWRPIIPDLAEN-FFVVAPDLIGFG---QSEYP---ET-YPG 80 (285)
T ss_dssp TTSCEEEEEESC------TTSCEEEEECCCSTTCCHHHHHGGGHHHHHTT-SEEEEECCTTST---TSCCC---SS-CCS
T ss_pred CCEEEEEEecCC------CCCCEEEEEeCCCCCCcchhhHHHHHHHHhhC-cEEEEecCCCCC---CCCCC---CC-ccc
Confidence 456665443321 2346799999964 222234566667777665 999999999944 43211 10 022
Q ss_pred hHHHH----HHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh--------hccCCCCC
Q 003363 651 DVNDV----LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--------MVGTTDIP 718 (826)
Q Consensus 651 ~~~D~----~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~--------~~~~~~~~ 718 (826)
.++++ .+.+..+++. ++.+++.|+||||||.+++.++.++|++++++|+.+|...... +......+
T Consensus 81 ~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (285)
T 1c4x_A 81 HIMSWVGMRVEQILGLMNH--FGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELARLLAFYADP 158 (285)
T ss_dssp SHHHHHHHHHHHHHHHHHH--HTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHHHHHTGGGSC
T ss_pred chhhhhhhHHHHHHHHHHH--hCCCccEEEEEChHHHHHHHHHHhChHHhheEEEeccCCCCCCccchhHHHHHHHhccc
Confidence 34555 5545444444 2347899999999999999999999999999999987542100 00000000
Q ss_pred CchhhhhccCcCCccCCCC--C------------ChhhHHHHhh------------cCcccccCCCCCcEEEEEeCCCCC
Q 003363 719 DWCYVESYGSKGKDSFTES--P------------SVEDLTRFHS------------KSPISHISKVKTPTIFLLGAQDLR 772 (826)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~--~------------~~~~~~~~~~------------~sp~~~~~~i~~PvLii~G~~D~~ 772 (826)
.+................. . ..+....+.. ......+.++++|+|+++|++|..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~ 238 (285)
T 1c4x_A 159 RLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRLPHDVLVFHGRQDRI 238 (285)
T ss_dssp CHHHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTTCCSCEEEEEETTCSS
T ss_pred cHHHHHHHHHHhhcCcccccCcHHHHHHHHHhccCHHHHHHHHHHhccccccccccccchhhhccCCCCEEEEEeCCCee
Confidence 0000000000000000000 0 0000000000 012234678899999999999999
Q ss_pred CCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 773 VPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 773 vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+|++.++.+++.+. ..++++++++||...... ..++.+.+.+||.+
T Consensus 239 ~p~~~~~~~~~~~~----~~~~~~i~~~gH~~~~e~-p~~~~~~i~~fl~~ 284 (285)
T 1c4x_A 239 VPLDTSLYLTKHLK----HAELVVLDRCGHWAQLER-WDAMGPMLMEHFRA 284 (285)
T ss_dssp SCTHHHHHHHHHCS----SEEEEEESSCCSCHHHHS-HHHHHHHHHHHHHC
T ss_pred eCHHHHHHHHHhCC----CceEEEeCCCCcchhhcC-HHHHHHHHHHHHhc
Confidence 99999888877765 379999999999865433 45788889999864
|
| >3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-17 Score=170.82 Aligned_cols=214 Identities=13% Similarity=0.129 Sum_probs=135.4
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
+.|+||++||++... ..|...+..|++ ||.|+++|+||.+..... .......++++.+.+..+++. ++.
T Consensus 22 ~~~~vv~~HG~~~~~--~~~~~~~~~L~~-~~~vi~~d~~G~G~s~~~------~~~~~~~~~~~~~~~~~~~~~--l~~ 90 (278)
T 3oos_A 22 EGPPLCVTHLYSEYN--DNGNTFANPFTD-HYSVYLVNLKGCGNSDSA------KNDSEYSMTETIKDLEAIREA--LYI 90 (278)
T ss_dssp SSSEEEECCSSEECC--TTCCTTTGGGGG-TSEEEEECCTTSTTSCCC------SSGGGGSHHHHHHHHHHHHHH--TTC
T ss_pred CCCeEEEEcCCCcch--HHHHHHHHHhhc-CceEEEEcCCCCCCCCCC------CCcccCcHHHHHHHHHHHHHH--hCC
Confidence 357899999977553 345556677776 999999999995443211 112233467777777766666 345
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCC-----CCchh----hhhccCc------------
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI-----PDWCY----VESYGSK------------ 729 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~-----~~~~~----~~~~~~~------------ 729 (826)
+++.|+|||+||.+++.++.++|++++++|+.+|............. ..... .......
T Consensus 91 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (278)
T 3oos_A 91 NKWGFAGHSAGGMLALVYATEAQESLTKIIVGGAAASKEYASHKDSIYCSKNVKFNRIVSIMNALNDDSTVQEERKALSR 170 (278)
T ss_dssp SCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBGGGGGSTTSTTSTTSTTHHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred CeEEEEeecccHHHHHHHHHhCchhhCeEEEecCccccccccccchhhhhhchhHHHHHHHHHhhcccccCchHHHHHHH
Confidence 68999999999999999999999999999999998762111100000 00000 0000000
Q ss_pred -----------CCccCCCCCC-----hhhHHHHh-----hcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhC
Q 003363 730 -----------GKDSFTESPS-----VEDLTRFH-----SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 788 (826)
Q Consensus 730 -----------~~~~~~~~~~-----~~~~~~~~-----~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~ 788 (826)
....+...+. ......+. ..+....+.++++|+|+++|++|..+|++.+.++.+.+.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~- 249 (278)
T 3oos_A 171 EWALMSFYSEEKLEEALKLPNSGKTVGNRLNYFRQVEYKDYDVRQKLKFVKIPSFIYCGKHDVQCPYIFSCEIANLIPN- 249 (278)
T ss_dssp HHHHHHCSCHHHHHHHTTSCCCCEECHHHHHHHHHTTGGGCBCHHHHTTCCSCEEEEEETTCSSSCHHHHHHHHHHSTT-
T ss_pred HHhhcccCCcHHHHHHhhccccchhHHHHHHHhhhcccccccHHHHHhCCCCCEEEEEeccCCCCCHHHHHHHHhhCCC-
Confidence 0000000000 01111111 2233455678999999999999999999999888887753
Q ss_pred CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 003363 789 GVETKVIVFPNDVHGIERPQSDFESFLNIGLW 820 (826)
Q Consensus 789 g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w 820 (826)
+++++++++||.+... ...++.+.+.+|
T Consensus 250 ---~~~~~~~~~gH~~~~~-~p~~~~~~i~~f 277 (278)
T 3oos_A 250 ---ATLTKFEESNHNPFVE-EIDKFNQFVNDT 277 (278)
T ss_dssp ---EEEEEETTCSSCHHHH-SHHHHHHHHHHT
T ss_pred ---cEEEEcCCcCCCcccc-cHHHHHHHHHhh
Confidence 7999999999986533 333555555555
|
| >3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.7e-18 Score=182.87 Aligned_cols=234 Identities=14% Similarity=0.133 Sum_probs=143.6
Q ss_pred CCCCcEEEEEcCCCCCCCC----------c-cchHHH---HHHHHCCcEEEEECCCCCCC--------CchhhhhcCCC-
Q 003363 589 CSCDPLIVVLHGGPHSVSL----------S-SYSKSL---AFLSSVGYSLLIVNYRGSLG--------FGEEALQSLPG- 645 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~----------~-~~~~~~---~~la~~G~~Vl~~d~rG~~g--------~G~~~~~~~~~- 645 (826)
..+.|+||++||.+..... . -|...+ ..|...||.|+++|+||.|. +|........+
T Consensus 39 ~~~~p~vll~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~G~S~G~~~g~~g~~~~~p~~~~ 118 (377)
T 3i1i_A 39 RERSNVILICHYFSATSHAAGKYTAHDEESGWWDGLIGPGKAIDTNQYFVICTDNLCNVQVKNPHVITTGPKSINPKTGD 118 (377)
T ss_dssp TTCCCEEEEECCTTCCSCCSSCSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSCTTSTTCCCCSTTSBCTTTSS
T ss_pred CCCCCEEEEeccccCcchhccccccccccccchhhhcCCCCccccccEEEEEecccccccccCCCcccCCCCCCCCCCCC
Confidence 3456899999997665322 0 133333 46667899999999998532 12111000000
Q ss_pred ----CCCcchHHHHHHHHHHHHHcCCCCCCcEE-EEEecchHHHHHHHHHhCCCceeEEEe-cCCccchhhh-cc-----
Q 003363 646 ----KVGSQDVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAA-RNPLCNLALM-VG----- 713 (826)
Q Consensus 646 ----~~~~~~~~D~~~~i~~l~~~~~~d~~rv~-l~G~S~GG~~a~~~a~~~p~~~~a~v~-~~p~~~~~~~-~~----- 713 (826)
.+....++|+.+.+..+++. ++.+++. |+||||||.+++.+|.++|++++++|+ .++....... ..
T Consensus 119 ~~~~~~~~~~~~~~~~d~~~~l~~--l~~~~~~ilvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~ 196 (377)
T 3i1i_A 119 EYAMDFPVFTFLDVARMQCELIKD--MGIARLHAVMGPSAGGMIAQQWAVHYPHMVERMIGVITNPQNPIITSVNVAQNA 196 (377)
T ss_dssp BCGGGSCCCCHHHHHHHHHHHHHH--TTCCCBSEEEEETHHHHHHHHHHHHCTTTBSEEEEESCCSBCCHHHHHHTTHHH
T ss_pred cccCCCCCCCHHHHHHHHHHHHHH--cCCCcEeeEEeeCHhHHHHHHHHHHChHHHHHhcccCcCCCcCCchhhHHHHHH
Confidence 01134677888888777776 4456786 999999999999999999999999999 6654331000 00
Q ss_pred ---CCCCCCch-----------------------------hhhhccCcCCcc-----C-----------------CCCCC
Q 003363 714 ---TTDIPDWC-----------------------------YVESYGSKGKDS-----F-----------------TESPS 739 (826)
Q Consensus 714 ---~~~~~~~~-----------------------------~~~~~~~~~~~~-----~-----------------~~~~~ 739 (826)
....+.|. +...+....... + .....
T Consensus 197 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (377)
T 3i1i_A 197 IEAIRLDPSWKGGKYGEEQPMKGLQLANRMMFMNAFDEHFYETTYPRNSIEVEPYEKVSSLTSFEKEINKLTYRSIELVD 276 (377)
T ss_dssp HHHHHHSGGGGGGCCTTSCCHHHHHHHHHHHHTTSSCHHHHHHHSCCCSSCCGGGTCTTCCCHHHHHHHHHHHHTTTTCC
T ss_pred HHHHhcCCCccCCccccCCccchHHHHHHHHhhhcCCHHHHHHHhhhhhccccccccccchhHHHHHHHHHHhhhhcccC
Confidence 00000000 000000000000 0 00000
Q ss_pred hhh----HHHHhhcCc-------ccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCC-CCCCCCCC
Q 003363 740 VED----LTRFHSKSP-------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN-DVHGIERP 807 (826)
Q Consensus 740 ~~~----~~~~~~~sp-------~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~-~~H~~~~~ 807 (826)
... ...+...+. ...+.++++|+|+++|++|..+|++.+..+++.+++.+..++++++++ +||.....
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~gH~~~~e 356 (377)
T 3i1i_A 277 ANSWMYTAKAVLLHDIAHGFSSLEEALSNVEANVLMIPCKQDLLQPSRYNYKMVDLLQKQGKYAEVYEIESINGHMAGVF 356 (377)
T ss_dssp HHHHHHHHHHHHHCBTTTTSSCHHHHHHTCCSEEEEECBTTCSSSCTHHHHHHHHHHHHTTCCEEECCBCCTTGGGHHHH
T ss_pred HHHHHHHHHHHhhcccccccCCHHHHHhhCCCCEEEEecCCccccCHHHHHHHHHHHHhcCCCceEEEcCCCCCCcchhc
Confidence 000 000011111 234578899999999999999999999999999987777899999998 99976544
Q ss_pred CCHHHHHHHHHHHHHHHc
Q 003363 808 QSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 808 ~~~~~~~~~i~~w~~~~l 825 (826)
+. .++.+.|.+||++++
T Consensus 357 ~p-~~~~~~i~~fl~~~~ 373 (377)
T 3i1i_A 357 DI-HLFEKKVYEFLNRKV 373 (377)
T ss_dssp CG-GGTHHHHHHHHHSCC
T ss_pred CH-HHHHHHHHHHHHhhh
Confidence 33 477889999998875
|
| >3d59_A Platelet-activating factor acetylhydrolase; secreted protein, alpha/beta-hydrolase-fold, LDL-bound, lipoprotein associated phospholipase A2, LP-PLA2; 1.50A {Homo sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-17 Score=181.00 Aligned_cols=192 Identities=18% Similarity=0.128 Sum_probs=133.6
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhh------hcCCCCC-------Cc-----
Q 003363 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL------QSLPGKV-------GS----- 649 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~------~~~~~~~-------~~----- 649 (826)
.++++|+||++||++.. ...|...++.|+++||.|+++|+||.+....... ......+ +.
T Consensus 94 ~~~~~P~Vv~~HG~~~~--~~~~~~~a~~La~~Gy~V~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 171 (383)
T 3d59_A 94 PGEKYPLVVFSHGLGAF--RTLYSAIGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAEIGDKSWLYLRTLKQEEETHI 171 (383)
T ss_dssp CSSCEEEEEEECCTTCC--TTTTHHHHHHHHHTTCEEEEECCCSSCSSEEEECSSHHHHHHTCCEEEECCCCCHHHHHHH
T ss_pred cCCCCCEEEEcCCCCCC--chHHHHHHHHHHhCceEEEEeccCCCCccceeecCCccccccCCceeeeccccCcccchhh
Confidence 34689999999997755 4567888999999999999999998654321000 0000000 10
Q ss_pred ------chHHHHHHHHHHHHH--------------------cCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecC
Q 003363 650 ------QDVNDVLTAIDHVID--------------------MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 703 (826)
Q Consensus 650 ------~~~~D~~~~i~~l~~--------------------~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 703 (826)
...+|+..+++++.+ ...+|.+||+++|||+||.+++.++.+.+ +++++|+.+
T Consensus 172 ~~~~~~~~~~d~~~~l~~l~~~~~~~~~~~~~~~~~d~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~-~v~a~v~~~ 250 (383)
T 3d59_A 172 RNEQVRQRAKECSQALSLILDIDHGKPVKNALDLKFDMEQLKDSIDREKIAVIGHSFGGATVIQTLSEDQ-RFRCGIALD 250 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSCCSCCGGGGTTCEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEES
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccchhhhhccccccceeEEEEChhHHHHHHHHhhCC-CccEEEEeC
Confidence 114688889999876 34577889999999999999999988755 699999988
Q ss_pred CccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHH
Q 003363 704 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYAR 783 (826)
Q Consensus 704 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~ 783 (826)
|... +... ..+.++++|+|++||++|..+ ... +..+
T Consensus 251 ~~~~------------------------------p~~~-----------~~~~~i~~P~Lii~g~~D~~~--~~~-~~~~ 286 (383)
T 3d59_A 251 AWMF------------------------------PLGD-----------EVYSRIPQPLFFINSEYFQYP--ANI-IKMK 286 (383)
T ss_dssp CCCT------------------------------TCCG-----------GGGGSCCSCEEEEEETTTCCH--HHH-HHHH
T ss_pred CccC------------------------------CCch-----------hhhccCCCCEEEEecccccch--hhH-HHHH
Confidence 7421 0000 122567899999999999854 332 3346
Q ss_pred HHHhCCCCEEEEEeCCCCCCCCC------------------CCCH----HHHHHHHHHHHHHHcC
Q 003363 784 ALREKGVETKVIVFPNDVHGIER------------------PQSD----FESFLNIGLWFKKYCK 826 (826)
Q Consensus 784 ~l~~~g~~~~~~~~p~~~H~~~~------------------~~~~----~~~~~~i~~w~~~~l~ 826 (826)
++...+.+.+++++++++|.+.. .... ..+...+++||+++|+
T Consensus 287 ~l~~~~~~~~~~~~~g~~H~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Fl~~~L~ 351 (383)
T 3d59_A 287 KCYSPDKERKMITIRGSVHQNFADFTFATGKIIGHMLKLKGDIDSNVAIDLSNKASLAFLQKHLG 351 (383)
T ss_dssp TTCCTTSCEEEEEETTCCGGGGSGGGGSSCHHHHHHTTSSCSSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCceEEEEeCCCcCCCcccHhhhhhHHhhhhhcccCCcCHHHHHHHHHHHHHHHHHHHcC
Confidence 66667788999999999998621 1112 1233469999999975
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=174.36 Aligned_cols=217 Identities=15% Similarity=0.123 Sum_probs=143.0
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHH-HHHCC---cEEEEECCCCCCCCchhhh--hcCCC
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAF-LSSVG---YSLLIVNYRGSLGFGEEAL--QSLPG 645 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~-la~~G---~~Vl~~d~rG~~g~G~~~~--~~~~~ 645 (826)
.|.++..++|.|++++..+++|+|+++||++.......+...... .++.| ++|+.+|+++...++...+ +-.+.
T Consensus 28 ~g~~~~~~v~~P~~~~~~~~~Pvl~~lhG~~~~~~~~~~~~~~~~~~~~~g~~~~ivV~i~~~~~~~~~~~~r~~~~~~~ 107 (275)
T 2qm0_A 28 EGKEYQIHISKPKQPAPDSGYPVIYVLDGNAFFQTFHEAVKIQSVRAEKTGVSPAIIVGVGYPIEGAFSGEERCYDFTPS 107 (275)
T ss_dssp TCCEEEEEEECCSSCCCTTCEEEEEEESHHHHHHHHHHHHHHHGGGHHHHCCCCCEEEEEECSCSSSCCHHHHHHHHCSS
T ss_pred CCCEEEEEEECCCCCCCCCCccEEEEecChHHHHHHHHHHHHHhhcchhcCCCCeEEEEECCCCCCcCcccccccccCCC
Confidence 577899999999998777899999999997631111112112222 24567 9999999998543321100 00000
Q ss_pred ----------------CCC-cchHHHHH--HHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCcc
Q 003363 646 ----------------KVG-SQDVNDVL--TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (826)
Q Consensus 646 ----------------~~~-~~~~~D~~--~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 706 (826)
..+ .....+.+ +.+.++.++..+|+++++|+|||+||++++.++.++|+.|+++++.+|..
T Consensus 108 ~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~l~~~i~~~~~~~~~~~~~~G~S~GG~~a~~~~~~~p~~f~~~~~~s~~~ 187 (275)
T 2qm0_A 108 VISKDAPLKPDGKPWPKTGGAHNFFTFIEEELKPQIEKNFEIDKGKQTLFGHXLGGLFALHILFTNLNAFQNYFISSPSI 187 (275)
T ss_dssp CCCC---------CCCCCCCHHHHHHHHHHTHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCT
T ss_pred CccccCCccccCCcCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCEEEEecchhHHHHHHHHhCchhhceeEEeCcee
Confidence 111 11223322 34455556555788999999999999999999999999999999999986
Q ss_pred chhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHH-
Q 003363 707 NLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARAL- 785 (826)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l- 785 (826)
.+... .+.. .. ....... ......+|++++||+.|..++..++++++++|
T Consensus 188 ~~~~~-------------~~~~--------~~-~~~~~~~-------~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~L~ 238 (275)
T 2qm0_A 188 WWNNK-------------SVLE--------KE-ENLIIEL-------NNAKFETGVFLTVGSLEREHMVVGANELSERLL 238 (275)
T ss_dssp THHHH-------------GGGG--------GT-THHHHHH-------HTCSSCEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred eeChH-------------HHHH--------HH-HHHHhhh-------cccCCCceEEEEeCCcccchhhHHHHHHHHHHH
Confidence 43211 0000 00 0000000 02345689999999999999999999999999
Q ss_pred --HhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 003363 786 --REKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 786 --~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~ 821 (826)
+..|+++++.++|+++|+.. ....+...+.||
T Consensus 239 ~~~~~g~~~~~~~~~g~~H~~~----~~~~l~~~l~~l 272 (275)
T 2qm0_A 239 QVNHDKLKFKFYEAEGENHASV----VPTSLSKGLRFI 272 (275)
T ss_dssp HCCCTTEEEEEEEETTCCTTTH----HHHHHHHHHHHH
T ss_pred hcccCCceEEEEECCCCCcccc----HHHHHHHHHHHH
Confidence 56788999999999999643 223445566665
|
| >2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A | Back alignment and structure |
|---|
Probab=99.71 E-value=6.9e-17 Score=169.82 Aligned_cols=231 Identities=17% Similarity=0.189 Sum_probs=139.7
Q ss_pred CC-eeEEEEEEecCCCCCCCCCcEEEEEcCCC-CCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCc
Q 003363 572 AQ-KPFEAIFVSSSHKKDCSCDPLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (826)
Q Consensus 572 ~g-~~l~~~~~~P~~~~~~~~~P~vv~~HGg~-~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~ 649 (826)
+| ..++....- .++.|.||++||.+ +......|...+..|++. |.|+++|+||. |.+.. +.. ..
T Consensus 21 ~g~~~l~y~~~G------~g~~~~vvllHG~~pg~~~~~~w~~~~~~L~~~-~~via~Dl~G~---G~S~~---~~~-~~ 86 (291)
T 2wue_A 21 DGPLKLHYHEAG------VGNDQTVVLLHGGGPGAASWTNFSRNIAVLARH-FHVLAVDQPGY---GHSDK---RAE-HG 86 (291)
T ss_dssp SSEEEEEEEEEC------TTCSSEEEEECCCCTTCCHHHHTTTTHHHHTTT-SEEEEECCTTS---TTSCC---CSC-CS
T ss_pred CCcEEEEEEecC------CCCCCcEEEECCCCCccchHHHHHHHHHHHHhc-CEEEEECCCCC---CCCCC---CCC-CC
Confidence 56 666654432 23346899999963 322234566677778665 99999999994 44321 111 12
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC--C----------CC
Q 003363 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT--T----------DI 717 (826)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~--~----------~~ 717 (826)
..++++.+.+..+++. ++.+++.|+||||||.+++.+|.++|++++++|+.+|.......... . ..
T Consensus 87 ~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (291)
T 2wue_A 87 QFNRYAAMALKGLFDQ--LGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPTEGVKRLSKFSVA 164 (291)
T ss_dssp SHHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCSSSCCCSSSCSSCHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHH--hCCCCeEEEEEChhHHHHHHHHHhChHhhcEEEEECCCCCCccccccccchhhHHHHHHhcc
Confidence 3466666555555554 23478999999999999999999999999999999875421000000 0 00
Q ss_pred CCchhhhhccCcCC---ccC---------CCCCChhhHHHHhh-----cC-----cc--cccCCCCCcEEEEEeCCCCCC
Q 003363 718 PDWCYVESYGSKGK---DSF---------TESPSVEDLTRFHS-----KS-----PI--SHISKVKTPTIFLLGAQDLRV 773 (826)
Q Consensus 718 ~~~~~~~~~~~~~~---~~~---------~~~~~~~~~~~~~~-----~s-----p~--~~~~~i~~PvLii~G~~D~~v 773 (826)
+.+.....+..... ... ...........+.. .+ .. ..+.++++|+|+++|++|..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~ 244 (291)
T 2wue_A 165 PTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGKSFAGADFEAGMMWREVYRLRQPVLLIWGREDRVN 244 (291)
T ss_dssp CCHHHHHHHHHTSCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHHHTSTTGGGGCGGGTGGGCCSCEEEEEETTCSSS
T ss_pred CCHHHHHHHHHHhccCcccCCHHHHHHHHHHhcCchHHHHHHHHHhhccccccccchhHHHHhhCCCCeEEEecCCCCCC
Confidence 00000000000000 000 00000000001100 00 11 456788999999999999999
Q ss_pred CcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 774 PVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 774 p~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
|++.+..+.+.+.. .++++++++||...... ..++.+.+.+||++
T Consensus 245 ~~~~~~~~~~~~p~----~~~~~i~~~gH~~~~e~-p~~~~~~i~~fl~~ 289 (291)
T 2wue_A 245 PLDGALVALKTIPR----AQLHVFGQCGHWVQVEK-FDEFNKLTIEFLGG 289 (291)
T ss_dssp CGGGGHHHHHHSTT----EEEEEESSCCSCHHHHT-HHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHCCC----CeEEEeCCCCCChhhhC-HHHHHHHHHHHHhc
Confidence 99988888777653 79999999999865433 44778888888864
|
| >1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12 PDB: 1hl7_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=5.7e-17 Score=169.13 Aligned_cols=213 Identities=17% Similarity=0.217 Sum_probs=131.0
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCc
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 672 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 672 (826)
|.||++||.+.. ...|...+..|+++||.|+++|+||.+. +... ......+++.+.+..+++. ++.++
T Consensus 24 ~pvvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G~G~---S~~~-----~~~~~~~~~~~dl~~~l~~--l~~~~ 91 (279)
T 1hkh_A 24 QPVVLIHGYPLD--GHSWERQTRELLAQGYRVITYDRRGFGG---SSKV-----NTGYDYDTFAADLHTVLET--LDLRD 91 (279)
T ss_dssp EEEEEECCTTCC--GGGGHHHHHHHHHTTEEEEEECCTTSTT---SCCC-----SSCCSHHHHHHHHHHHHHH--HTCCS
T ss_pred CcEEEEcCCCch--hhHHhhhHHHHHhCCcEEEEeCCCCCCC---CCCC-----CCCCCHHHHHHHHHHHHHh--cCCCc
Confidence 459999997654 5578888999999999999999999544 3211 1122344444444444443 24578
Q ss_pred EEEEEecchHHHHHHHHHhCCC-ceeEEEecCCccchhhhccC-CC-CCCchh--------------hhhccCcCCcc--
Q 003363 673 VTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPLCNLALMVGT-TD-IPDWCY--------------VESYGSKGKDS-- 733 (826)
Q Consensus 673 v~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~p~~~~~~~~~~-~~-~~~~~~--------------~~~~~~~~~~~-- 733 (826)
+.|+||||||.+++.++.++|+ +++++|+.++.......... .. .+.... ...+.......
T Consensus 92 ~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (279)
T 1hkh_A 92 VVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDNPEGVPQEVFDGIEAAAKGDRFAWFTDFYKNFYNLDE 171 (279)
T ss_dssp EEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHH
T ss_pred eEEEEeChhHHHHHHHHHHcCccceeeEEEEccCCcccccCcCCcCCCcHHHHHHHHHHhhhhhhhhHHHHHhhhhhccc
Confidence 9999999999999999999998 99999999874321100000 00 000000 00000000000
Q ss_pred -CCCCCChhhHHHHh------------------hcCcccccCCC---CCcEEEEEeCCCCCCCcHHH-HHHHHHHHhCCC
Q 003363 734 -FTESPSVEDLTRFH------------------SKSPISHISKV---KTPTIFLLGAQDLRVPVSNG-LQYARALREKGV 790 (826)
Q Consensus 734 -~~~~~~~~~~~~~~------------------~~sp~~~~~~i---~~PvLii~G~~D~~vp~~~~-~~~~~~l~~~g~ 790 (826)
.......+....+. ..+....+.++ ++|+|+++|++|..+|++.+ ..+.+.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~~---- 247 (279)
T 1hkh_A 172 NLGSRISEQAVTGSWNVAIGSAPVAAYAVVPAWIEDFRSDVEAVRAAGKPTLILHGTKDNILPIDATARRFHQAVP---- 247 (279)
T ss_dssp HBTTTBCHHHHHHHHHHHHTSCTTHHHHTHHHHTCBCHHHHHHHHHHCCCEEEEEETTCSSSCTTTTHHHHHHHCT----
T ss_pred CCcccccHHHHHhhhhhhccCcHHHHHHHHHHHhhchhhhHHHhccCCCCEEEEEcCCCccCChHHHHHHHHHhCC----
Confidence 00000111111000 11112235567 89999999999999998877 66766654
Q ss_pred CEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 791 ETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 791 ~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
..++++++++||.+... ...++.+.+.+||+
T Consensus 248 ~~~~~~i~~~gH~~~~e-~p~~~~~~i~~fl~ 278 (279)
T 1hkh_A 248 EADYVEVEGAPHGLLWT-HADEVNAALKTFLA 278 (279)
T ss_dssp TSEEEEETTCCTTHHHH-THHHHHHHHHHHHH
T ss_pred CeeEEEeCCCCccchhc-CHHHHHHHHHHHhh
Confidence 37899999999987543 34578888888885
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.9e-16 Score=164.11 Aligned_cols=190 Identities=13% Similarity=0.027 Sum_probs=129.0
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-----ccchHHHHHHHHCC----cEEEEECCCCCCCCchhhhhcCCC
Q 003363 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-----SSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQSLPG 645 (826)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-----~~~~~~~~~la~~G----~~Vl~~d~rG~~g~G~~~~~~~~~ 645 (826)
.+.+++|.|++++..+++|+||++||++..... ..+...+..|+++| |+|+.+|++|..+.+..
T Consensus 52 ~~~~~vy~P~~~~~~~~~Pvlv~lHG~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ivv~pd~~~~~~~~~~------- 124 (297)
T 1gkl_A 52 TKSLNVYLPYGYDPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNGGNCTAQN------- 124 (297)
T ss_dssp EEEEEEEECTTCCTTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHTTSSCCEEEEECCSCSTTCCTTT-------
T ss_pred EEEEEEEeCCCCCCCCCCCEEEEECCCCCCcchhhcccchHHHHHHHHHHcCCCCCEEEEEecCcCCccchHH-------
Confidence 889999999988767889999999998754321 12334566777764 99999999874322111
Q ss_pred CCCcchHHHHHHHHHHHHHcCC------------CCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhcc
Q 003363 646 KVGSQDVNDVLTAIDHVIDMGL------------ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 713 (826)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~------------~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~ 713 (826)
+.....+| ++.++.+... .|+++++|+|+||||++++.++.++|++|+++++.+|...+...
T Consensus 125 -~~~~~~~~---l~~~i~~~~~~~~~~~~~~~i~~d~~~~~i~G~S~GG~~al~~a~~~p~~f~~~v~~sg~~~~~~~-- 198 (297)
T 1gkl_A 125 -FYQEFRQN---VIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDYWYGNS-- 198 (297)
T ss_dssp -HHHHHHHT---HHHHHHHHSCSSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEEEEESCCCCBSSS--
T ss_pred -HHHHHHHH---HHHHHHHhCCccccccccccccCCccceEEEEECHHHHHHHHHHHhCchhhheeeEeccccccCCc--
Confidence 11111233 3444444422 26678999999999999999999999999999999986532100
Q ss_pred CCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCC----
Q 003363 714 TTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG---- 789 (826)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g---- 789 (826)
+. ........+... ..+.....++++.+|+.|..+ .+++++.++|+++|
T Consensus 199 -------------~~---------~~~~~~~~~~~~---~~~~~~~~~l~~~~G~~D~~~--~~~~~l~~~L~~~g~~~~ 251 (297)
T 1gkl_A 199 -------------PQ---------DKANSIAEAINR---SGLSKREYFVFAATGSEDIAY--ANMNPQIEAMKALPHFDY 251 (297)
T ss_dssp -------------HH---------HHHHHHHHHHHH---HTCCTTSCEEEEEEETTCTTH--HHHHHHHHHHHTSTTCCB
T ss_pred -------------cc---------hhhhHHHHHHhh---ccCCcCcEEEEEEeCCCcccc--hhHHHHHHHHHHcCCccc
Confidence 00 000111111111 112233466777899999764 68889999999998
Q ss_pred ------CCEEEEEeCCCCCCC
Q 003363 790 ------VETKVIVFPNDVHGI 804 (826)
Q Consensus 790 ------~~~~~~~~p~~~H~~ 804 (826)
+++++.++||++|.+
T Consensus 252 ~~~~~~~~~~~~~~~g~gH~~ 272 (297)
T 1gkl_A 252 TSDFSKGNFYFLVAPGATHWW 272 (297)
T ss_dssp BSCTTTCCEEEEEETTCCSSH
T ss_pred cccccCCceEEEECCCCCcCH
Confidence 699999999999975
|
| >2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein, BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics, PSI-2; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.3e-17 Score=159.48 Aligned_cols=181 Identities=14% Similarity=0.062 Sum_probs=123.7
Q ss_pred CCcEEEEEcCCCCCCC-CccchH-HHHHHHHC-CcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC
Q 003363 591 CDPLIVVLHGGPHSVS-LSSYSK-SLAFLSSV-GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~-~~~~~~-~~~~la~~-G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (826)
+.|+||++||++.... ...|.. ....|+++ ||.|+++|+||... .++...++.+++.-.
T Consensus 3 ~~p~vv~lHG~~~~~~~~~~~~~~~~~~l~~~~g~~vi~~d~~g~~~------------------~~~~~~~~~~~~~l~ 64 (194)
T 2qs9_A 3 SPSKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPIT------------------ARESIWLPFMETELH 64 (194)
T ss_dssp CCCEEEEECCSSSSCTTTSTTHHHHHHHHTTSTTCCEEECCCSSTTT------------------CCHHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCCcccchHHHHHHHHHhhccCceEEEeeCCCCCc------------------ccHHHHHHHHHHHhC
Confidence 4689999999776532 234544 67788877 99999999998321 122334444455422
Q ss_pred CCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHh
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 747 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (826)
+ .+++.|+|||+||.+++.++.++| ++++|+.+|...... .. .... ..+...+.
T Consensus 65 ~-~~~~~lvG~S~Gg~ia~~~a~~~p--v~~lvl~~~~~~~~~--------~~--~~~~-----~~~~~~~~-------- 118 (194)
T 2qs9_A 65 C-DEKTIIIGHSSGAIAAMRYAETHR--VYAIVLVSAYTSDLG--------DE--NERA-----SGYFTRPW-------- 118 (194)
T ss_dssp C-CTTEEEEEETHHHHHHHHHHHHSC--CSEEEEESCCSSCTT--------CH--HHHH-----TSTTSSCC--------
T ss_pred c-CCCEEEEEcCcHHHHHHHHHHhCC--CCEEEEEcCCccccc--------hh--hhHH-----Hhhhcccc--------
Confidence 2 278999999999999999999998 999999988653210 00 0000 00000110
Q ss_pred hcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 748 SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 748 ~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
....+.++.+|+|+++|++|..+|++.+..+.+.+ . .+++++++++|.+.... . +.+..+++||++..
T Consensus 119 ---~~~~~~~~~~p~lii~G~~D~~vp~~~~~~~~~~~-~----~~~~~~~~~gH~~~~~~-p-~~~~~~~~fl~~~~ 186 (194)
T 2qs9_A 119 ---QWEKIKANCPYIVQFGSTDDPFLPWKEQQEVADRL-E----TKLHKFTDCGHFQNTEF-H-ELITVVKSLLKVPA 186 (194)
T ss_dssp ---CHHHHHHHCSEEEEEEETTCSSSCHHHHHHHHHHH-T----CEEEEESSCTTSCSSCC-H-HHHHHHHHHHTCCC
T ss_pred ---cHHHHHhhCCCEEEEEeCCCCcCCHHHHHHHHHhc-C----CeEEEeCCCCCccchhC-H-HHHHHHHHHHHhhh
Confidence 01122334679999999999999999999998888 3 58999999999876433 3 56677789998653
|
| >3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A | Back alignment and structure |
|---|
Probab=99.71 E-value=6.9e-17 Score=169.44 Aligned_cols=216 Identities=15% Similarity=0.181 Sum_probs=138.2
Q ss_pred CCcEEEEEcCCCCCCCCccch-HHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~-~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (826)
+.|+||++||.+.. ...|. ..+..|+++||.|+++|+|| +|.+.. + .....+++.+.+..+++. ++
T Consensus 42 ~~~~vv~lHG~~~~--~~~~~~~~~~~l~~~g~~vi~~D~~G---~G~s~~---~---~~~~~~~~~~~~~~~l~~--l~ 108 (293)
T 3hss_A 42 TGDPVVFIAGRGGA--GRTWHPHQVPAFLAAGYRCITFDNRG---IGATEN---A---EGFTTQTMVADTAALIET--LD 108 (293)
T ss_dssp SSEEEEEECCTTCC--GGGGTTTTHHHHHHTTEEEEEECCTT---SGGGTT---C---CSCCHHHHHHHHHHHHHH--HT
T ss_pred CCCEEEEECCCCCc--hhhcchhhhhhHhhcCCeEEEEccCC---CCCCCC---c---ccCCHHHHHHHHHHHHHh--cC
Confidence 45889999997755 44566 56788889999999999999 454421 1 123455555555555554 24
Q ss_pred CCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhcc------------CCCCC-Cchhh----hhccCcC--
Q 003363 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG------------TTDIP-DWCYV----ESYGSKG-- 730 (826)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~------------~~~~~-~~~~~----~~~~~~~-- 730 (826)
.+++.|+|||+||.+++.++.++|++++++|+.+|......... ....+ .+... ..+....
T Consensus 109 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (293)
T 3hss_A 109 IAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGRLDRARQFFNKAEAELYDSGVQLPPTYDARARLLENFSRKTLN 188 (293)
T ss_dssp CCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHSCHHHHT
T ss_pred CCcEEEEeeCccHHHHHHHHHHChHHHHhhheecccccCChhhhHHHHHHHHHHhhcccchhhHHHHHHHhhhccccccc
Confidence 57899999999999999999999999999999998653211100 00000 00000 0000000
Q ss_pred -----------CccCCCCCChhhHHH---HhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEE
Q 003363 731 -----------KDSFTESPSVEDLTR---FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 796 (826)
Q Consensus 731 -----------~~~~~~~~~~~~~~~---~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 796 (826)
............... ....+....+.++++|+|+++|++|..+|++.+..+.+.+++ +++++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~----~~~~~ 264 (293)
T 3hss_A 189 DDVAVGDWIAMFSMWPIKSTPGLRCQLDCAPQTNRLPAYRNIAAPVLVIGFADDVVTPPYLGREVADALPN----GRYLQ 264 (293)
T ss_dssp CHHHHHHHHHHHHHSCCCCCHHHHHHHTSSCSSCCHHHHTTCCSCEEEEEETTCSSSCHHHHHHHHHHSTT----EEEEE
T ss_pred ccccHHHHHHHHhhccccccHHHHhHhhhccccchHHHHhhCCCCEEEEEeCCCCCCCHHHHHHHHHHCCC----ceEEE
Confidence 000000000000000 011222345678899999999999999999998888887754 79999
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 797 FPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 797 ~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
++++||..... ...++.+.|.+||++.
T Consensus 265 ~~~~gH~~~~~-~p~~~~~~i~~fl~~~ 291 (293)
T 3hss_A 265 IPDAGHLGFFE-RPEAVNTAMLKFFASV 291 (293)
T ss_dssp ETTCCTTHHHH-SHHHHHHHHHHHHHTC
T ss_pred eCCCcchHhhh-CHHHHHHHHHHHHHhc
Confidence 99999986543 3457888899998763
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.9e-17 Score=178.34 Aligned_cols=133 Identities=17% Similarity=0.117 Sum_probs=93.0
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC---------ccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhc
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL---------SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQS 642 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~---------~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~ 642 (826)
....+.++++.|.+..+.+++|+||++||++..... ..+...+..|+++||.|+++|+||.++++...
T Consensus 59 ~~~~~~g~l~~P~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~V~~~D~~G~G~s~~~~--- 135 (397)
T 3h2g_A 59 EPATASGVLLIPGGERCSGPYPLLGWGHPTEALRAQEQAKEIRDAKGDDPLVTRLASQGYVVVGSDYLGLGKSNYAY--- 135 (397)
T ss_dssp CEEEEEEEEEEEECTTCCSCEEEEEEECCCCCBTTCCHHHHHHHTTTCSHHHHTTGGGTCEEEEECCTTSTTCCCSS---
T ss_pred CeEEEEEEEEeCCCCCCCCCCcEEEEeCCCcCCCCcccccccccccchHHHHHHHHHCCCEEEEecCCCCCCCCCCc---
Confidence 335689999999876556789999999997765322 12556778889999999999999966543211
Q ss_pred CCCCCC-----cchHHHHHHHHHHHHHc-CCCCCCcEEEEEecchHHHHHHHHHh-CC----C-ceeEEEecCCccchh
Q 003363 643 LPGKVG-----SQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQ-AP----D-KFVAAAARNPLCNLA 709 (826)
Q Consensus 643 ~~~~~~-----~~~~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~a~~-~p----~-~~~a~v~~~p~~~~~ 709 (826)
..+. ...+.|...++..+.++ +..|+++|+|+|||+||++++.++.. .+ + .+.+++..++..++.
T Consensus 136 --~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 212 (397)
T 3h2g_A 136 --HPYLHSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLSKEFHLVASAPISGPYALE 212 (397)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTTSEEEEEEEESCCSSHH
T ss_pred --cchhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEECHHHHHHHHHHHHhhhhcCcCcceEEEecccccccHH
Confidence 1111 12355566666666554 33346899999999999999887632 22 2 578888888877764
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.9e-17 Score=177.62 Aligned_cols=140 Identities=10% Similarity=0.024 Sum_probs=103.4
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC------------ccch----HHHHHHHHCCcEEEEECCC
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL------------SSYS----KSLAFLSSVGYSLLIVNYR 630 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~------------~~~~----~~~~~la~~G~~Vl~~d~r 630 (826)
.+...+|..+.++++.|++. .++.|+||++||.+..... ..|. ..++.|+++||+|+++|+|
T Consensus 91 ~~~~~~g~~l~~~l~~P~~~--~~~~P~Vl~~HG~g~~~~~~~~~~~~~~~~~~~y~~~~~~~a~~la~~G~~Vl~~D~r 168 (391)
T 3g8y_A 91 EFYPFPKSVSTFLVLKPEHL--KGAVPGVLCIPGSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMVKEGYVAVAVDNA 168 (391)
T ss_dssp EECCSTTCCEEEEEEEETTC--CSCEEEEEEECCTTCCHHHHTTCCCSSGGGCCCTTSTTTCHHHHHHTTTCEEEECCCT
T ss_pred EEEcCCCCEEEEEEEeCCCC--CCCCCEEEEeCCCCCCchhhccccccccccchhhcchHHHHHHHHHHCCCEEEEecCC
Confidence 45566788999999999842 5789999999996543210 0112 5678999999999999999
Q ss_pred CCCCCchhhhhcC----------------CCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC
Q 003363 631 GSLGFGEEALQSL----------------PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 694 (826)
Q Consensus 631 G~~g~G~~~~~~~----------------~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~ 694 (826)
|.++.+....... ...+....+.|+.++++++.+++.+|++||+|+|||+||++++.+++. ++
T Consensus 169 g~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~a~d~l~~~~~vd~~rI~v~G~S~GG~~al~~a~~-~~ 247 (391)
T 3g8y_A 169 AAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEPMMVLGVL-DK 247 (391)
T ss_dssp TSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCTTEEEEEEEEEEEGGGHHHHHHHHHH-CT
T ss_pred CccccCCcccccccccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEChhHHHHHHHHHc-CC
Confidence 9665443211000 001111224799999999999988999999999999999999988886 56
Q ss_pred ceeEEEecCCccchh
Q 003363 695 KFVAAAARNPLCNLA 709 (826)
Q Consensus 695 ~~~a~v~~~p~~~~~ 709 (826)
+++++|+.++++.+.
T Consensus 248 ~i~a~v~~~~~~~~~ 262 (391)
T 3g8y_A 248 DIYAFVYNDFLCQTQ 262 (391)
T ss_dssp TCCEEEEESCBCCHH
T ss_pred ceeEEEEccCCCCcc
Confidence 799999888877664
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=162.49 Aligned_cols=207 Identities=12% Similarity=0.180 Sum_probs=131.1
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHH------
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVI------ 663 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~------ 663 (826)
++.|+||++||.+.. ...|. .+..|+ +||.|+++|+||.+... .......++..+.+..++
T Consensus 14 ~~~~~vv~~hG~~~~--~~~~~-~~~~l~-~g~~v~~~d~~g~g~s~---------~~~~~~~~~~~~~~~~~~~~~~~~ 80 (245)
T 3e0x_A 14 KSPNTLLFVHGSGCN--LKIFG-ELEKYL-EDYNCILLDLKGHGESK---------GQCPSTVYGYIDNVANFITNSEVT 80 (245)
T ss_dssp TCSCEEEEECCTTCC--GGGGT-TGGGGC-TTSEEEEECCTTSTTCC---------SCCCSSHHHHHHHHHHHHHHCTTT
T ss_pred CCCCEEEEEeCCccc--HHHHH-HHHHHH-hCCEEEEecCCCCCCCC---------CCCCcCHHHHHHHHHHHHHhhhhH
Confidence 356899999997655 34555 555565 89999999999954432 111224555555555555
Q ss_pred HcCCCCCCcEEEEEecchHHHHHHHHHh-CCCceeEEEecCCccchhhhc-------cCCCCCCchhhhhccCc------
Q 003363 664 DMGLANPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMV-------GTTDIPDWCYVESYGSK------ 729 (826)
Q Consensus 664 ~~~~~d~~rv~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~p~~~~~~~~-------~~~~~~~~~~~~~~~~~------ 729 (826)
+. ++ ++.|+|||+||.+++.++.+ +|+ ++++|+.+|........ ..... ...+.......
T Consensus 81 ~~--~~--~~~l~G~S~Gg~~a~~~a~~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 154 (245)
T 3e0x_A 81 KH--QK--NITLIGYSMGGAIVLGVALKKLPN-VRKVVSLSGGARFDKLDKDFMEKIYHNQL-DNNYLLECIGGIDNPLS 154 (245)
T ss_dssp TT--CS--CEEEEEETHHHHHHHHHHTTTCTT-EEEEEEESCCSBCTTSCHHHHHHHHTTCC-CHHHHHHHHTCSCSHHH
T ss_pred hh--cC--ceEEEEeChhHHHHHHHHHHhCcc-ccEEEEecCCCccccccHHHHHHHHHHHH-HhhcCcccccccchHHH
Confidence 33 33 89999999999999999999 999 99999999976541100 00000 00000000000
Q ss_pred --CCccCCCCCC--hhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCC
Q 003363 730 --GKDSFTESPS--VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 805 (826)
Q Consensus 730 --~~~~~~~~~~--~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 805 (826)
....+...+. ..........+....+.++++|+|+++|++|..+|++.+..+++.+++ ++++++++++|.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~~~~~~~gH~~~ 230 (245)
T 3e0x_A 155 EKYFETLEKDPDIMINDLIACKLIDLVDNLKNIDIPVKAIVAKDELLTLVEYSEIIKKEVEN----SELKIFETGKHFLL 230 (245)
T ss_dssp HHHHTTSCSSHHHHHHHHHHHHHCBCGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHHSSS----EEEEEESSCGGGHH
T ss_pred HHHHHHHhcCcHHHHHHHHHhccccHHHHHHhCCCCEEEEEeCCCCCCCHHHHHHHHHHcCC----ceEEEeCCCCcceE
Confidence 0000011000 011122233455566788999999999999999999999888887753 79999999999865
Q ss_pred CCCCHHHHHHHHHHH
Q 003363 806 RPQSDFESFLNIGLW 820 (826)
Q Consensus 806 ~~~~~~~~~~~i~~w 820 (826)
.. ...++.+.+.+|
T Consensus 231 ~~-~~~~~~~~i~~f 244 (245)
T 3e0x_A 231 VV-NAKGVAEEIKNF 244 (245)
T ss_dssp HH-THHHHHHHHHTT
T ss_pred Ee-cHHHHHHHHHhh
Confidence 33 333555555555
|
| >3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A | Back alignment and structure |
|---|
Probab=99.70 E-value=6.3e-17 Score=166.51 Aligned_cols=215 Identities=16% Similarity=0.139 Sum_probs=129.2
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
..|.||++||.+.+ ...|...+..|++. |.|+++|+||. |.+... . ...++++.+.+..+++. ++.
T Consensus 15 ~~~~vvllHG~~~~--~~~w~~~~~~L~~~-~~via~Dl~G~---G~S~~~---~---~~~~~~~a~dl~~~l~~--l~~ 80 (255)
T 3bf7_A 15 NNSPIVLVHGLFGS--LDNLGVLARDLVND-HNIIQVDVRNH---GLSPRE---P---VMNYPAMAQDLVDTLDA--LQI 80 (255)
T ss_dssp CCCCEEEECCTTCC--TTTTHHHHHHHTTT-SCEEEECCTTS---TTSCCC---S---CCCHHHHHHHHHHHHHH--HTC
T ss_pred CCCCEEEEcCCccc--HhHHHHHHHHHHhh-CcEEEecCCCC---CCCCCC---C---CcCHHHHHHHHHHHHHH--cCC
Confidence 34779999997755 45688888888765 99999999994 443211 1 12334444333333333 234
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCc--cch----hhhc----c--CCCCCCchhhhhccCcCC-------
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL--CNL----ALMV----G--TTDIPDWCYVESYGSKGK------- 731 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~--~~~----~~~~----~--~~~~~~~~~~~~~~~~~~------- 731 (826)
+++.|+||||||.+++.++.++|++++++|+.++. ... .... . ..................
T Consensus 81 ~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (255)
T 3bf7_A 81 DKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEEGVIQ 160 (255)
T ss_dssp SCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCCSCCCHHHHHHHHHHHHSCCCSHHHHHHHHTTTCCCHHHHH
T ss_pred CCeeEEeeCccHHHHHHHHHhCcHhhccEEEEcCCcccCCcccHHHHHHHHHhccccccccHHHHHHHHhhhcchhHHHH
Confidence 68999999999999999999999999999987532 110 0000 0 000000000000000000
Q ss_pred ---ccCC---CCCChhhH-HHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCC
Q 003363 732 ---DSFT---ESPSVEDL-TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804 (826)
Q Consensus 732 ---~~~~---~~~~~~~~-~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 804 (826)
..+. ........ ..+........+.++++|+|+++|++|..++++.+..+.+.+. ..+++++|++||.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~~~gH~~ 236 (255)
T 3bf7_A 161 FLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDHPALFIPGGNSPYVSEQYRDDLLAQFP----QARAHVIAGAGHWV 236 (255)
T ss_dssp HHHTTEETTEESSCHHHHHHTHHHHHCCCCCCCCCSCEEEECBTTCSTTCGGGHHHHHHHCT----TEEECCBTTCCSCH
T ss_pred HHHHhccCCceeecHHHHHhhhhhccccccccccCCCeEEEECCCCCCCCHHHHHHHHHHCC----CCeEEEeCCCCCcc
Confidence 0000 00000000 0010000012356789999999999999999988877776654 38999999999986
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 003363 805 ERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 805 ~~~~~~~~~~~~i~~w~~~~ 824 (826)
.... ...+.+.+.+|+.+|
T Consensus 237 ~~e~-p~~~~~~i~~fl~~~ 255 (255)
T 3bf7_A 237 HAEK-PDAVLRAIRRYLNDH 255 (255)
T ss_dssp HHHC-HHHHHHHHHHHHHTC
T ss_pred ccCC-HHHHHHHHHHHHhcC
Confidence 5444 357888999999865
|
| >3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-16 Score=165.33 Aligned_cols=234 Identities=11% Similarity=0.122 Sum_probs=136.5
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCc
Q 003363 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~ 649 (826)
..+|..++..... +.|+||++||.+.. ...|...+..|++ ||.|+++|+||.+. +...........
T Consensus 19 ~~~g~~l~~~~~g--------~~~~vv~lHG~~~~--~~~~~~~~~~l~~-~~~v~~~D~~G~G~---S~~~~~~~~~~~ 84 (306)
T 3r40_A 19 NTSSGRIFARVGG--------DGPPLLLLHGFPQT--HVMWHRVAPKLAE-RFKVIVADLPGYGW---SDMPESDEQHTP 84 (306)
T ss_dssp CCTTCCEEEEEEE--------CSSEEEEECCTTCC--GGGGGGTHHHHHT-TSEEEEECCTTSTT---SCCCCCCTTCGG
T ss_pred EeCCEEEEEEEcC--------CCCeEEEECCCCCC--HHHHHHHHHHhcc-CCeEEEeCCCCCCC---CCCCCCCcccCC
Confidence 3456667655432 34789999998765 4567778888887 99999999999543 321111111113
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCC--------------
Q 003363 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT-------------- 715 (826)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~-------------- 715 (826)
...+++.+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.+|...........
T Consensus 85 ~~~~~~~~~~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (306)
T 3r40_A 85 YTKRAMAKQLIEAMEQ--LGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDILPTYEYWQRMNRAYALKIYHWSFLA 162 (306)
T ss_dssp GSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCHHHHHHHCSHHHHHHSTHHHHHT
T ss_pred CCHHHHHHHHHHHHHH--hCCCCEEEEEecchHHHHHHHHHhChhhccEEEEecCCCCccchhhhhhhhhhhhHHHHHhh
Confidence 4566766666666665 345789999999999999999999999999999999754321110000
Q ss_pred CC---C-------CchhhhhccCcCCcc-CCCCCChhhHHHHhh--cC------------------------cccccCCC
Q 003363 716 DI---P-------DWCYVESYGSKGKDS-FTESPSVEDLTRFHS--KS------------------------PISHISKV 758 (826)
Q Consensus 716 ~~---~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~s------------------------p~~~~~~i 758 (826)
.. . ...+...+....... .......+..+.+.. .. ....+.++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 242 (306)
T 3r40_A 163 QPAPLPENLLGGDPDFYVKAKLASWTRAGDLSAFDPRAVEHYRIAFADPMRRHVMCEDYRAGAYADFEHDKIDVEAGNKI 242 (306)
T ss_dssp SCTTHHHHHHTSCHHHHHHHHHHHTSSSSSSTTSCHHHHHHHHHHHTSHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCB
T ss_pred cccchHHHHHcCCHHHHHHHHhhcccCCCccccCCHHHHHHHHHHHccCCCcchhhHHHHhcccccchhhhhhhhhccCC
Confidence 00 0 000000000000000 000011111111110 00 00135788
Q ss_pred CCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 759 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 759 ~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
++|+|+++|++|..+|.....+..+.+.. .++++++ ++||..... ...++.+.|.+||++.
T Consensus 243 ~~P~lii~g~~D~~~~~~~~~~~~~~~~~---~~~~~~~-~~gH~~~~e-~p~~~~~~i~~fl~~~ 303 (306)
T 3r40_A 243 PVPMLALWGASGIAQSAATPLDVWRKWAS---DVQGAPI-ESGHFLPEE-APDQTAEALVRFFSAA 303 (306)
T ss_dssp CSCEEEEEETTCC------CHHHHHHHBS---SEEEEEE-SSCSCHHHH-SHHHHHHHHHHHHHC-
T ss_pred CcceEEEEecCCcccCchhHHHHHHhhcC---CCeEEEe-cCCcCchhh-ChHHHHHHHHHHHHhc
Confidence 99999999999999986555555555433 4788888 689976543 4457889999999864
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=167.55 Aligned_cols=214 Identities=14% Similarity=0.193 Sum_probs=132.8
Q ss_pred cEEEEEcCCC-CCCCCccchHHH-HHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 593 PLIVVLHGGP-HSVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 593 P~vv~~HGg~-~~~~~~~~~~~~-~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
|.||++||.+ .......|...+ ..|++ +|.|+++|+||.| .+.. +. ......+++.+.+..+++. ++.
T Consensus 37 ~~vvllHG~~~~~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G---~S~~---~~-~~~~~~~~~~~~l~~~l~~--l~~ 106 (289)
T 1u2e_A 37 ETVVLLHGSGPGATGWANFSRNIDPLVEA-GYRVILLDCPGWG---KSDS---VV-NSGSRSDLNARILKSVVDQ--LDI 106 (289)
T ss_dssp SEEEEECCCSTTCCHHHHTTTTHHHHHHT-TCEEEEECCTTST---TSCC---CC-CSSCHHHHHHHHHHHHHHH--TTC
T ss_pred ceEEEECCCCcccchhHHHHHhhhHHHhc-CCeEEEEcCCCCC---CCCC---CC-ccccCHHHHHHHHHHHHHH--hCC
Confidence 3899999964 222233565566 66765 4999999999954 3321 11 1134566766666666665 345
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCC------------CCCchhhhhccCcCCccCCCC-
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD------------IPDWCYVESYGSKGKDSFTES- 737 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~- 737 (826)
+++.|+||||||.+++.++.++|++++++|+.+|............ .+.+.....+.... .+...
T Consensus 107 ~~~~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 184 (289)
T 1u2e_A 107 AKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIF--VFDTSD 184 (289)
T ss_dssp CCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHTT--SSCTTS
T ss_pred CceEEEEECHhHHHHHHHHHHCHHhhhEEEEECCCccccccccccchhhHHHHHHHHhcchHHHHHHHHHHh--hcCccc
Confidence 7899999999999999999999999999999887542110000000 00000000000000 00000
Q ss_pred CChh--------------hHHHHh---------hcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEE
Q 003363 738 PSVE--------------DLTRFH---------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 794 (826)
Q Consensus 738 ~~~~--------------~~~~~~---------~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 794 (826)
...+ ....+. ..+....+.++++|+|+++|++|..+|++.+.++.+.+.. .++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~----~~~ 260 (289)
T 1u2e_A 185 LTDALFEARLNNMLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDRFVPMDAGLRLLSGIAG----SEL 260 (289)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHCSCCSCCCGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHSTT----CEE
T ss_pred CCHHHHHHHHHHhhcChhHHHHHHHHHHhccccccchhhHHhhcCCCeEEEeeCCCCccCHHHHHHHHhhCCC----cEE
Confidence 0000 000000 0112245678899999999999999999999888887754 689
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 795 IVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 795 ~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
++++++||...... ..++.+.+.+||++
T Consensus 261 ~~i~~~gH~~~~e~-p~~~~~~i~~fl~~ 288 (289)
T 1u2e_A 261 HIFRDCGHWAQWEH-ADAFNQLVLNFLAR 288 (289)
T ss_dssp EEESSCCSCHHHHT-HHHHHHHHHHHHTC
T ss_pred EEeCCCCCchhhcC-HHHHHHHHHHHhcC
Confidence 99999999865433 44777888888863
|
| >1j1i_A META cleavage compound hydrolase; carbazole degradation, META cleavage product hydrolase, histidine tagged protein, alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-16 Score=165.78 Aligned_cols=217 Identities=14% Similarity=0.087 Sum_probs=133.2
Q ss_pred CcEEEEEcCCC-CCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 592 DPLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 592 ~P~vv~~HGg~-~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
.|.||++||.+ .......|...+..|++. |.|+++|+||.| .+. . . .....+++..+.+..+++. +..
T Consensus 36 g~~vvllHG~~~~~~~~~~~~~~~~~L~~~-~~vi~~Dl~G~G---~S~-~---~-~~~~~~~~~~~dl~~~l~~--l~~ 104 (296)
T 1j1i_A 36 GQPVILIHGGGAGAESEGNWRNVIPILARH-YRVIAMDMLGFG---KTA-K---P-DIEYTQDRRIRHLHDFIKA--MNF 104 (296)
T ss_dssp SSEEEEECCCSTTCCHHHHHTTTHHHHTTT-SEEEEECCTTST---TSC-C---C-SSCCCHHHHHHHHHHHHHH--SCC
T ss_pred CCeEEEECCCCCCcchHHHHHHHHHHHhhc-CEEEEECCCCCC---CCC-C---C-CCCCCHHHHHHHHHHHHHh--cCC
Confidence 36799999964 222234566667777655 999999999954 432 1 1 1123455555555555554 233
Q ss_pred -CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhcc-CCC----CCCchhhhhccCcCCccCCCCCChhh--
Q 003363 671 -SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-TTD----IPDWCYVESYGSKGKDSFTESPSVED-- 742 (826)
Q Consensus 671 -~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-- 742 (826)
+++.|+||||||.+++.++.++|++++++|+.+|......... ... .+.+............. ......+.
T Consensus 105 ~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 183 (296)
T 1j1i_A 105 DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTREGMVHLVKALTND-GFKIDDAMIN 183 (296)
T ss_dssp SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCSCHHHHHHHHHHHSCT-TCCCCHHHHH
T ss_pred CCCeEEEEEChhHHHHHHHHHhChHhhhEEEEECCCCCCCCCCchHHHHhcccCCchHHHHHHHHhccC-cccccHHHHH
Confidence 6899999999999999999999999999999987542110000 000 00000000000000000 00000000
Q ss_pred -----------HHHHh-----------hcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 003363 743 -----------LTRFH-----------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 800 (826)
Q Consensus 743 -----------~~~~~-----------~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~ 800 (826)
...+. .......+.++++|+|+++|++|..+|++.+..+.+.+.. .++++++++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~~~~~~~~~~~~~~~----~~~~~i~~~ 259 (296)
T 1j1i_A 184 SRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQGKDDKVVPVETAYKFLDLIDD----SWGYIIPHC 259 (296)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSCEEEEEETTCSSSCHHHHHHHHHHCTT----EEEEEESSC
T ss_pred HHHHHhhCcchhhHHHHHHHHHHhcccccccHHHhhcCCCCEEEEEECCCcccCHHHHHHHHHHCCC----CEEEEECCC
Confidence 00000 0112234678999999999999999999998888877653 789999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 801 VHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 801 ~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
||...... ..++.+.+.+||.+++
T Consensus 260 gH~~~~e~-p~~~~~~i~~fl~~~~ 283 (296)
T 1j1i_A 260 GHWAMIEH-PEDFANATLSFLSLRV 283 (296)
T ss_dssp CSCHHHHS-HHHHHHHHHHHHHHC-
T ss_pred CCCchhcC-HHHHHHHHHHHHhccC
Confidence 99865433 4578889999998754
|
| >2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-16 Score=172.98 Aligned_cols=246 Identities=13% Similarity=0.117 Sum_probs=147.3
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-------cchHHHH---HHHHCCcEEEEECCCC-CCCCchhhh
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-------SYSKSLA---FLSSVGYSLLIVNYRG-SLGFGEEAL 640 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-------~~~~~~~---~la~~G~~Vl~~d~rG-~~g~G~~~~ 640 (826)
+|..++...+.++ ...+.|+||++||.+...... .|...+. .|++.||.|+++|+|| .++......
T Consensus 42 ~g~~l~y~~~g~~---~~~~~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~vi~~D~~G~~g~s~~~~~ 118 (377)
T 2b61_A 42 SYINVAYQTYGTL---NDEKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGTTGPSS 118 (377)
T ss_dssp CSEEEEEEEESCC---CTTCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSSSCTTS
T ss_pred cceeEEEEecccc---cccCCCeEEEeCCCCCccccccccccchhhhhccCcccccccCCceEEEecCCCCCCCCCCCcc
Confidence 3555655544332 223358999999977653220 0554443 3667899999999999 444322110
Q ss_pred hcCC-------CCCCcchHHHHHHHHHHHHHcCCCCCCcEE-EEEecchHHHHHHHHHhCCCceeEEEecCCccchhh--
Q 003363 641 QSLP-------GKVGSQDVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-- 710 (826)
Q Consensus 641 ~~~~-------~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~-l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~-- 710 (826)
..+ ..+....++|+.+.+..+++. ++.+++. |+|||+||.+++.+|.++|++++++|+.+|......
T Consensus 119 -~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~ 195 (377)
T 2b61_A 119 -INPQTGKPYGSQFPNIVVQDIVKVQKALLEH--LGISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSSIYFSAEA 195 (377)
T ss_dssp -BCTTTSSBCGGGCCCCCHHHHHHHHHHHHHH--TTCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSSCCHHH
T ss_pred -cCccccccccccCCcccHHHHHHHHHHHHHH--cCCcceeEEEEEChhHHHHHHHHHHCchhhheeEEeccCccccccc
Confidence 000 000124677888777777776 4557888 999999999999999999999999999998543210
Q ss_pred --hc-----cCCCCCCchh------------------------------hhhccCcCCcc--------------------
Q 003363 711 --MV-----GTTDIPDWCY------------------------------VESYGSKGKDS-------------------- 733 (826)
Q Consensus 711 --~~-----~~~~~~~~~~------------------------------~~~~~~~~~~~-------------------- 733 (826)
+. .....+.|.. ...+.......
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (377)
T 2b61_A 196 IGFNHVMRQAVINDPNFNGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWGDYFQVESYLSYQGKK 275 (377)
T ss_dssp HHHHHHHHHHHHTSTTCGGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBCTTCCTTSCCBHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcCccccccchhccCCCchhhhHHHHhhhhcccCHHHHHHHhccccccccccccchHHHHHHHHhhhhh
Confidence 00 0000001100 00000000000
Q ss_pred CCCCCChhhH----HHHhhcC-------cccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeC-CCC
Q 003363 734 FTESPSVEDL----TRFHSKS-------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP-NDV 801 (826)
Q Consensus 734 ~~~~~~~~~~----~~~~~~s-------p~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p-~~~ 801 (826)
+......... ..+...+ ....+.++++|+|+++|++|..+|+++..+..+.+.+....+++++++ ++|
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~G~~D~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~g 355 (377)
T 2b61_A 276 FLERFDANSYLHLLRALDMYDPSLGYENVKEALSRIKARYTLVSVTTDQLFKPIDLYKSKQLLEQSGVDLHFYEFPSDYG 355 (377)
T ss_dssp HHTTCCHHHHHHHHHHHHHCCTTTTSSCHHHHHTTCCSEEEEEEETTCSSSCHHHHHHHHHHHHHTTCEEEEEEECCTTG
T ss_pred hccccChhHHHHHHHHHhccccccccchHHhhhhhcCCCEEEEecCCcccCCccchHHHHHHHHhcCCCceEEEeCCCCC
Confidence 0000000000 0011111 134567899999999999999999966666666666655668999999 999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHH
Q 003363 802 HGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 802 H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
|...... ..++.+.|.+||+++
T Consensus 356 H~~~~e~-p~~~~~~i~~fl~~~ 377 (377)
T 2b61_A 356 HDAFLVD-YDQFEKRIRDGLAGN 377 (377)
T ss_dssp GGHHHHC-HHHHHHHHHHHHHTC
T ss_pred chhhhcC-HHHHHHHHHHHHhcC
Confidence 9876443 347888999999763
|
| >2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-16 Score=163.38 Aligned_cols=218 Identities=17% Similarity=0.083 Sum_probs=130.9
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (826)
+..|.||++||.+.+ ...|...+..|+++||.|+++|+||.|.+.... .....++++.+.+..+++.-. .
T Consensus 8 ~~g~~vvllHG~~~~--~~~w~~~~~~L~~~g~~via~Dl~G~G~S~~~~-------~~~~~~~~~a~dl~~~l~~l~-~ 77 (264)
T 2wfl_A 8 KQQKHFVLVHGGCLG--AWIWYKLKPLLESAGHKVTAVDLSAAGINPRRL-------DEIHTFRDYSEPLMEVMASIP-P 77 (264)
T ss_dssp -CCCEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTTSTTCSCCG-------GGCCSHHHHHHHHHHHHHHSC-T
T ss_pred CCCCeEEEECCCccc--cchHHHHHHHHHhCCCEEEEeecCCCCCCCCCc-------ccccCHHHHHHHHHHHHHHhC-C
Confidence 456789999997654 456888889999999999999999954332110 011235555555555555421 1
Q ss_pred CCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchh---------hhccCCCCCCchh--hhhcc-----------
Q 003363 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA---------LMVGTTDIPDWCY--VESYG----------- 727 (826)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~---------~~~~~~~~~~~~~--~~~~~----------- 727 (826)
.+++.|+||||||.+++.++.++|++++++|+.++..... .+........|.. ...+.
T Consensus 78 ~~~~~lvGhSmGG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (264)
T 2wfl_A 78 DEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKYNEKCPADMMLDSQFSTYGNPENPGMSMIL 157 (264)
T ss_dssp TCCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCCCCTTSCTTHHHHHHHHHSCTTTTTTCEEEEESCTTSCEEEEEC
T ss_pred CCCeEEEEeChHHHHHHHHHHhChhhhceeEEEeeccCCCCcchhhHHHHhhhcCcchhhhhhhhhhccCCCCCcchhhh
Confidence 3689999999999999999999999999999988642100 0000000000000 00000
Q ss_pred -CcCC-ccCCCCCChhhHHHHh-hcCcc----------ccc---CCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCC
Q 003363 728 -SKGK-DSFTESPSVEDLTRFH-SKSPI----------SHI---SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVE 791 (826)
Q Consensus 728 -~~~~-~~~~~~~~~~~~~~~~-~~sp~----------~~~---~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~ 791 (826)
.... ..+......+...... ...+. ..+ ...++|+|+++|++|..+|++.++.+.+.+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~p~---- 233 (264)
T 2wfl_A 158 GPQFMALKMFQNCSVEDLELAKMLTRPGSLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVGA---- 233 (264)
T ss_dssp CHHHHHHHTSTTSCHHHHHHHHHHCCCEECCHHHHTTSCCCCTTTGGGSCEEEEEETTCSSSCHHHHHHHHHHHCC----
T ss_pred hHHHHHHHHhcCCCHHHHHHHHhccCCCcccccccccccccChHHhCCCCeEEEEeCCcCCCCHHHHHHHHHhCCC----
Confidence 0000 0000000111111000 00010 011 11368999999999999999998888888754
Q ss_pred EEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 792 TKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 792 ~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
.++++++++||....+.. .++.+.+.+|+.
T Consensus 234 ~~~~~i~~~gH~~~~e~P-~~~~~~l~~f~~ 263 (264)
T 2wfl_A 234 DKVKEIKEADHMGMLSQP-REVCKCLLDISD 263 (264)
T ss_dssp SEEEEETTCCSCHHHHSH-HHHHHHHHHHHC
T ss_pred ceEEEeCCCCCchhhcCH-HHHHHHHHHHhh
Confidence 689999999998764443 477788888864
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=175.39 Aligned_cols=140 Identities=11% Similarity=0.014 Sum_probs=103.8
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC------------Cccch----HHHHHHHHCCcEEEEECCC
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS------------LSSYS----KSLAFLSSVGYSLLIVNYR 630 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~------------~~~~~----~~~~~la~~G~~Vl~~d~r 630 (826)
.+...+|..+.++++.|++. .++.|+||++||++.... ...|. ..++.|+++||+|+++|+|
T Consensus 96 ~~~~~~g~~l~~~l~~P~~~--~~~~P~Vv~~HG~g~~~~~~~~~~g~~~~~~~~y~~~~~~~a~~la~~Gy~Vl~~D~r 173 (398)
T 3nuz_A 96 EFYPLPKCVSTFLVLIPDNI--NKPVPAILCIPGSGGNKEGLAGEPGIAPKLNDRYKDPKLTQALNFVKEGYIAVAVDNP 173 (398)
T ss_dssp EECCSTTBCEEEEEEEESSC--CSCEEEEEEECCTTCCHHHHHTCCCSSSTTCCSTTCTTTCHHHHHHTTTCEEEEECCT
T ss_pred EEEcCCCcEEEEEEEeCCCC--CCCccEEEEEcCCCCCcccccccccccccccccccchHHHHHHHHHHCCCEEEEecCC
Confidence 45566788999999999852 578999999999765321 00121 4778999999999999999
Q ss_pred CCCCCchhhhhc----------------CCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC
Q 003363 631 GSLGFGEEALQS----------------LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 694 (826)
Q Consensus 631 G~~g~G~~~~~~----------------~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~ 694 (826)
|.++.+...... ....+....+.|+.+++++|.+++.+|++||+|+|||+||++++.+++. ++
T Consensus 174 G~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~ald~l~~~~~vd~~rI~v~G~S~GG~~a~~~aa~-~~ 252 (398)
T 3nuz_A 174 AAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTEPMMVLGTL-DT 252 (398)
T ss_dssp TSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEEGGGHHHHHHHHHH-CT
T ss_pred CCCccccccccccccccchhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEECHhHHHHHHHHhc-CC
Confidence 966544322100 1112222345899999999999988999999999999999999988886 45
Q ss_pred ceeEEEecCCccchh
Q 003363 695 KFVAAAARNPLCNLA 709 (826)
Q Consensus 695 ~~~a~v~~~p~~~~~ 709 (826)
+++++|+.++++.+.
T Consensus 253 ~i~a~v~~~~~~~~~ 267 (398)
T 3nuz_A 253 SIYAFVYNDFLCQTQ 267 (398)
T ss_dssp TCCEEEEESCBCCHH
T ss_pred cEEEEEEecccccch
Confidence 788888877665543
|
| >2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold; 1.90A {Plesiocystis pacifica} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.6e-16 Score=162.82 Aligned_cols=229 Identities=17% Similarity=0.155 Sum_probs=137.4
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHH
Q 003363 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653 (826)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~ 653 (826)
..+++....|. ...|.||++||.+.. ...|...+..|+++||.|+++|+||. |.+.. +.......++
T Consensus 33 ~~l~y~~~G~~-----~~g~~vvllHG~~~~--~~~w~~~~~~L~~~g~rvia~Dl~G~---G~S~~---~~~~~~~~~~ 99 (297)
T 2xt0_A 33 LRMHYVDEGPR-----DAEHTFLCLHGEPSW--SFLYRKMLPVFTAAGGRVVAPDLFGF---GRSDK---PTDDAVYTFG 99 (297)
T ss_dssp CCEEEEEESCT-----TCSCEEEEECCTTCC--GGGGTTTHHHHHHTTCEEEEECCTTS---TTSCE---ESCGGGCCHH
T ss_pred eEEEEEEccCC-----CCCCeEEEECCCCCc--ceeHHHHHHHHHhCCcEEEEeCCCCC---CCCCC---CCCcccCCHH
Confidence 66765554332 114789999997754 55778888999999999999999994 44321 1111123455
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh-----------hcc-CCCCCCch
Q 003363 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-----------MVG-TTDIPDWC 721 (826)
Q Consensus 654 D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~-----------~~~-~~~~~~~~ 721 (826)
++.+.+..+++. ++.+++.|+||||||.+++.+|.++|++++++|+.++...... ... ........
T Consensus 100 ~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (297)
T 2xt0_A 100 FHRRSLLAFLDA--LQLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTALAVGLSPGKGFESWRDFVANSPDLDVGK 177 (297)
T ss_dssp HHHHHHHHHHHH--HTCCSEEEEECHHHHHHHTTHHHHCTTSEEEEEEESCCCCSSSCSCHHHHHHHHHHHTCTTCCHHH
T ss_pred HHHHHHHHHHHH--hCCCCEEEEEECchHHHHHHHHHhChHHhcEEEEECCCCCcccCCchhHHHHHHHhhcccccchhH
Confidence 555555555554 2347899999999999999999999999999999887431000 000 00000000
Q ss_pred hhhhccCc----CCccCCC-CCCh---hhHHHHhhc--------------CcccccC-CCCCcEEEEEeCCCCCCCcHHH
Q 003363 722 YVESYGSK----GKDSFTE-SPSV---EDLTRFHSK--------------SPISHIS-KVKTPTIFLLGAQDLRVPVSNG 778 (826)
Q Consensus 722 ~~~~~~~~----~~~~~~~-~~~~---~~~~~~~~~--------------sp~~~~~-~i~~PvLii~G~~D~~vp~~~~ 778 (826)
........ ....+.. .... .....+... .....+. ++++|+|+++|++|..+| ..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~P~Lvi~G~~D~~~~-~~~ 256 (297)
T 2xt0_A 178 LMQRAIPGITDAEVAAYDAPFPGPEFKAGVRRFPAIVPITPDMEGAEIGRQAMSFWSTQWSGPTFMAVGAQDPVLG-PEV 256 (297)
T ss_dssp HHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHGGGGSCCSTTSTTHHHHHHHHHHHHHTCCSCEEEEEETTCSSSS-HHH
T ss_pred HHhccCccCCHHHHHHHhccccCcchhHHHHHHHHhCccccccchhhHHHHHHHHhhhccCCCeEEEEeCCCcccC-hHH
Confidence 00000000 0000000 0000 000111000 0112355 899999999999999999 778
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 779 LQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 779 ~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
.++.+.+... ....+.++++||.... +. .++...|.+|++
T Consensus 257 ~~~~~~~p~~--~~~~~~~~~~GH~~~~-~p-~~~~~~i~~fl~ 296 (297)
T 2xt0_A 257 MGMLRQAIRG--CPEPMIVEAGGHFVQE-HG-EPIARAALAAFG 296 (297)
T ss_dssp HHHHHHHSTT--CCCCEEETTCCSSGGG-GC-HHHHHHHHHHTT
T ss_pred HHHHHhCCCC--eeEEeccCCCCcCccc-CH-HHHHHHHHHHHh
Confidence 8888777642 3333447999998775 44 478888888875
|
| >3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.2e-17 Score=172.54 Aligned_cols=212 Identities=16% Similarity=0.147 Sum_probs=132.3
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.|+||++||.+.. ...|...+..| ||.|+++|+||.+ .+.. ........+++.+.+..+++. ++.+
T Consensus 81 ~~~vv~~hG~~~~--~~~~~~~~~~l---g~~Vi~~D~~G~G---~S~~----~~~~~~~~~~~a~dl~~~l~~--l~~~ 146 (330)
T 3p2m_A 81 APRVIFLHGGGQN--AHTWDTVIVGL---GEPALAVDLPGHG---HSAW----REDGNYSPQLNSETLAPVLRE--LAPG 146 (330)
T ss_dssp CCSEEEECCTTCC--GGGGHHHHHHS---CCCEEEECCTTST---TSCC----CSSCBCCHHHHHHHHHHHHHH--SSTT
T ss_pred CCeEEEECCCCCc--cchHHHHHHHc---CCeEEEEcCCCCC---CCCC----CCCCCCCHHHHHHHHHHHHHH--hCCC
Confidence 4779999997755 44566555554 9999999999954 3321 111233466666666666665 3457
Q ss_pred cEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC--CC----------CCCchhhhhccCcCCccCCCCCC
Q 003363 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT--TD----------IPDWCYVESYGSKGKDSFTESPS 739 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~--~~----------~~~~~~~~~~~~~~~~~~~~~~~ 739 (826)
++.|+|||+||.+++.++.++|++++++|+.+|.......... .. ...+............ ......
T Consensus 147 ~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 225 (330)
T 3p2m_A 147 AEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDVTPSALQRHAELTAEQRGTVALMHGEREFPSFQAMLDLTIA-AAPHRD 225 (330)
T ss_dssp CCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCHHHHHHHHHHTCC-----------CCBSCHHHHHHHHHH-HCTTSC
T ss_pred CcEEEEECHhHHHHHHHHHhChhhcceEEEEcCCCccchhhhhhhhhhhhhhhhhcCCccccCHHHHHHHHHh-cCCCCC
Confidence 8999999999999999999999999999999976442110000 00 0000000000000000 000000
Q ss_pred hhhHHHHhhcC------------------------cccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEE-E
Q 003363 740 VEDLTRFHSKS------------------------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK-V 794 (826)
Q Consensus 740 ~~~~~~~~~~s------------------------p~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~-~ 794 (826)
.+......... ....+.++++|+|+++|++|..+|++.+..+.+.+.. .+ +
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~v~~~~~~~l~~~~~~----~~~~ 301 (330)
T 3p2m_A 226 VKSLRRGVFHNSRRLDNGNWVWRYDAIRTFGDFAGLWDDVDALSAPITLVRGGSSGFVTDQDTAELHRRATH----FRGV 301 (330)
T ss_dssp HHHHHHHHHTTEEECSSSCEEESSCCCSBCCCHHHHHHHHHHCCSCEEEEEETTCCSSCHHHHHHHHHHCSS----EEEE
T ss_pred HHHHHHHHHhcccccCCCceEEeechhhCccccHHHHHHHhhCCCCEEEEEeCCCCCCCHHHHHHHHHhCCC----CeeE
Confidence 01111000000 0123567899999999999999999999888877754 67 9
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 795 IVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 795 ~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
++++++||.+... ...++.+.|.+||++
T Consensus 302 ~~i~~~gH~~~~e-~p~~~~~~i~~fl~~ 329 (330)
T 3p2m_A 302 HIVEKSGHSVQSD-QPRALIEIVRGVLDT 329 (330)
T ss_dssp EEETTCCSCHHHH-CHHHHHHHHHHHTTC
T ss_pred EEeCCCCCCcchh-CHHHHHHHHHHHHhc
Confidence 9999999987543 445778888888865
|
| >1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A 1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A 2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A | Back alignment and structure |
|---|
Probab=99.69 E-value=4.5e-16 Score=165.20 Aligned_cols=228 Identities=16% Similarity=0.185 Sum_probs=139.6
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHH
Q 003363 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653 (826)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~ 653 (826)
..+++....|. .+.|.||++||.+.. ...|...+..|+++||.|+++|+|| +|.+.. +.......++
T Consensus 34 ~~l~y~~~G~~-----~~g~~vvllHG~~~~--~~~w~~~~~~L~~~g~rvia~Dl~G---~G~S~~---~~~~~~y~~~ 100 (310)
T 1b6g_A 34 LRAHYLDEGNS-----DAEDVFLCLHGEPTW--SYLYRKMIPVFAESGARVIAPDFFG---FGKSDK---PVDEEDYTFE 100 (310)
T ss_dssp CEEEEEEEECT-----TCSCEEEECCCTTCC--GGGGTTTHHHHHHTTCEEEEECCTT---STTSCE---ESCGGGCCHH
T ss_pred eEEEEEEeCCC-----CCCCEEEEECCCCCc--hhhHHHHHHHHHhCCCeEEEeCCCC---CCCCCC---CCCcCCcCHH
Confidence 67766555432 114789999997754 4578888899999999999999999 444421 1111123455
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccc--hhh------hccCCCC--CCchhh
Q 003363 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN--LAL------MVGTTDI--PDWCYV 723 (826)
Q Consensus 654 D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~--~~~------~~~~~~~--~~~~~~ 723 (826)
++.+.+..+++. ++.+++.|+||||||.+++.+|.++|++++++|+.++... ... +...... ..|...
T Consensus 101 ~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~Lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (310)
T 1b6g_A 101 FHRNFLLALIER--LDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXLMTDPVTQPAFSAFVTQPADGFTAWKYD 178 (310)
T ss_dssp HHHHHHHHHHHH--HTCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCCCCCTTTCTHHHHTTTSSTTTHHHHHHH
T ss_pred HHHHHHHHHHHH--cCCCCEEEEEcChHHHHHHHHHHhChHhheEEEEeccccccCCccccchhhhhhccchHHHHHHHH
Confidence 555555555554 2347899999999999999999999999999999887431 000 0000000 001000
Q ss_pred hhcc-------------C----cCCccCCC-CCCh---hhHHHHhh--c-----------CcccccC-CCCCcEEEEEeC
Q 003363 724 ESYG-------------S----KGKDSFTE-SPSV---EDLTRFHS--K-----------SPISHIS-KVKTPTIFLLGA 768 (826)
Q Consensus 724 ~~~~-------------~----~~~~~~~~-~~~~---~~~~~~~~--~-----------sp~~~~~-~i~~PvLii~G~ 768 (826)
.... . .....+.. .... .....+.. . .....+. ++++|+|+++|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~P~Lvi~G~ 258 (310)
T 1b6g_A 179 LVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQAXIDISTEAISFWQNDWNGQTFMAIGM 258 (310)
T ss_dssp HHSCSSCCHHHHHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTCCSEEEEEEET
T ss_pred hccCchhhhhhHHhhcCCCCCHHHHHHHhcccCCccchHHHHHHHHHhcccccchhhhhhhHhhhhhccccCceEEEecc
Confidence 0000 0 00000000 0000 00000000 0 0112355 899999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCCCCEEEEEe--CCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 769 QDLRVPVSNGLQYARALREKGVETKVIVF--PNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 769 ~D~~vp~~~~~~~~~~l~~~g~~~~~~~~--p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+|..+| ..+..+.+.+.+ .+++++ +++||.... ...++.+.+.+||.+
T Consensus 259 ~D~~~~-~~~~~~~~~ip~----~~~~~i~~~~~GH~~~~--~p~~~~~~i~~Fl~~ 308 (310)
T 1b6g_A 259 KDKLLG-PDVMYPMKALIN----GCPEPLEIADAGHFVQE--FGEQVAREALKHFAE 308 (310)
T ss_dssp TCSSSS-HHHHHHHHHHST----TCCCCEEETTCCSCGGG--GHHHHHHHHHHHHHH
T ss_pred Ccchhh-hHHHHHHHhccc----ccceeeecCCcccchhh--ChHHHHHHHHHHHhc
Confidence 999999 888888887765 344444 999998776 455888999999975
|
| >3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A | Back alignment and structure |
|---|
Probab=99.69 E-value=6.4e-17 Score=169.96 Aligned_cols=225 Identities=12% Similarity=0.166 Sum_probs=140.7
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcch
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~ 651 (826)
+|..++...+.+ ...|+||++||.+.. ...|...+..|+ +||.|+++|+||.+. +.. ......
T Consensus 18 ~g~~l~~~~~g~------~~~~~vl~lHG~~~~--~~~~~~~~~~l~-~~~~v~~~d~~G~G~---s~~-----~~~~~~ 80 (299)
T 3g9x_A 18 LGERMHYVDVGP------RDGTPVLFLHGNPTS--SYLWRNIIPHVA-PSHRCIAPDLIGMGK---SDK-----PDLDYF 80 (299)
T ss_dssp TTEEEEEEEESC------SSSCCEEEECCTTCC--GGGGTTTHHHHT-TTSCEEEECCTTSTT---SCC-----CCCCCC
T ss_pred CCeEEEEEecCC------CCCCEEEEECCCCcc--HHHHHHHHHHHc-cCCEEEeeCCCCCCC---CCC-----CCCccc
Confidence 566776555532 235689999997765 446666777774 699999999999543 321 111345
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCC----------CCCc-
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD----------IPDW- 720 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~----------~~~~- 720 (826)
++++.+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.++............ .+..
T Consensus 81 ~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (299)
T 3g9x_A 81 FDDHVRYLDAFIEA--LGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEFARETFQAFRTADVG 158 (299)
T ss_dssp HHHHHHHHHHHHHH--TTCCSEEEEEEHHHHHHHHHHHHHSGGGEEEEEEEEECCCBSSGGGSCGGGHHHHHHHTSSSHH
T ss_pred HHHHHHHHHHHHHH--hCCCcEEEEEeCccHHHHHHHHHhcchheeEEEEecCCcchhhhhhcchHHHHHHHHHcCCCcc
Confidence 67777777777666 3557899999999999999999999999999999885433210000000 0000
Q ss_pred --------hhhhhccCcCCccCCCCCChhhHHHHh-----------------hc--------------CcccccCCCCCc
Q 003363 721 --------CYVESYGSKGKDSFTESPSVEDLTRFH-----------------SK--------------SPISHISKVKTP 761 (826)
Q Consensus 721 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~--------------sp~~~~~~i~~P 761 (826)
.+...+.. ..+......+....+. .. +....+.++++|
T Consensus 159 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P 235 (299)
T 3g9x_A 159 RELIIDQNAFIEGALP---KCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNELPIAGEPANIVALVEAYMNWLHQSPVP 235 (299)
T ss_dssp HHHHTTSCHHHHTHHH---HTCSSCCCHHHHHHHHGGGSSGGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHHCCSC
T ss_pred hhhhccchhhHHHhhh---hhhccCCCHHHHHHHHHHhccccccchhhhhhhhhhhccccchhhhhhhhhhhhcccCCCC
Confidence 00000000 0000000111111110 00 111224678999
Q ss_pred EEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 762 TIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 762 vLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+|+++|++|..+|++.+..+.+.+.. +++++++++||.+.... ..++.+.|.+++.+
T Consensus 236 ~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~~~~~~~gH~~~~e~-p~~~~~~i~~~~~~ 292 (299)
T 3g9x_A 236 KLLFWGTPGVLIPPAEAARLAESLPN----CKTVDIGPGLHYLQEDN-PDLIGSEIARWLPA 292 (299)
T ss_dssp EEEEEEEECSSSCHHHHHHHHHHSTT----EEEEEEEEESSCHHHHC-HHHHHHHHHHHSGG
T ss_pred eEEEecCCCCCCCHHHHHHHHhhCCC----CeEEEeCCCCCcchhcC-HHHHHHHHHHHHhh
Confidence 99999999999999999888887754 78999999999865433 33666666666544
|
| >4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-17 Score=170.00 Aligned_cols=216 Identities=16% Similarity=0.157 Sum_probs=132.2
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
+.|+||++||.+.. ...|...+..|.++||.|+++|+||.+...... .......++++.+.+..+++. ++.
T Consensus 23 ~~~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~ 93 (279)
T 4g9e_A 23 EGAPLLMIHGNSSS--GAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAI-----DPDRSYSMEGYADAMTEVMQQ--LGI 93 (279)
T ss_dssp CEEEEEEECCTTCC--GGGGHHHHHSHHHHHEEEEEECCTTSTTSCCCS-----CHHHHSSHHHHHHHHHHHHHH--HTC
T ss_pred CCCeEEEECCCCCc--hhHHHHHHhHHHhcCCeEEeecCCCCCCCCCCC-----CcccCCCHHHHHHHHHHHHHH--hCC
Confidence 56889999997755 556877888877789999999999955432210 011123456666666666655 345
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCc-cchhhhc-cCCCCCCchh----------hhhccCcCCccCCCCC
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL-CNLALMV-GTTDIPDWCY----------VESYGSKGKDSFTESP 738 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~-~~~~~~~-~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 738 (826)
+++.|+|||+||.+++.++.++|+ +.++|+.++. ....... .......... ...+.. ..+....
T Consensus 94 ~~~~lvG~S~Gg~~a~~~a~~~p~-~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 169 (279)
T 4g9e_A 94 ADAVVFGWSLGGHIGIEMIARYPE-MRGLMITGTPPVAREEVGQGFKSGPDMALAGQEIFSERDVESYAR---STCGEPF 169 (279)
T ss_dssp CCCEEEEETHHHHHHHHHTTTCTT-CCEEEEESCCCCCGGGHHHHBCCSTTGGGGGCSCCCHHHHHHHHH---HHHCSSC
T ss_pred CceEEEEECchHHHHHHHHhhCCc-ceeEEEecCCCCCCCccchhhccchhhhhcCcccccHHHHHHHHH---hhccCcc
Confidence 689999999999999999999999 5555555443 2221110 0000000000 000000 0000000
Q ss_pred ChhhHHHHh------------------hcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHH-HHHHhCCCCEEEEEeCC
Q 003363 739 SVEDLTRFH------------------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA-RALREKGVETKVIVFPN 799 (826)
Q Consensus 739 ~~~~~~~~~------------------~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~-~~l~~~g~~~~~~~~p~ 799 (826)
.......+. ..+....+.++++|+|+++|++|..+|++....+. +.+. .++++++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~~~~~~~ 245 (279)
T 4g9e_A 170 EASLLDIVARTDGRARRIMFEKFGSGTGGNQRDIVAEAQLPIAVVNGRDEPFVELDFVSKVKFGNLW----EGKTHVIDN 245 (279)
T ss_dssp CHHHHHHHHHSCHHHHHHHHHHHHHTCBCCHHHHHHHCCSCEEEEEETTCSSBCHHHHTTCCCSSBG----GGSCEEETT
T ss_pred cHHHHHHHHhhhccchHHHHHHhhccCCchHHHHHHhcCCCEEEEEcCCCcccchHHHHHHhhccCC----CCeEEEECC
Confidence 001111111 11222335678999999999999999998877665 3333 367889999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 800 DVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 800 ~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
+||.... +...++.+.+.+||++.
T Consensus 246 ~gH~~~~-~~p~~~~~~i~~fl~~~ 269 (279)
T 4g9e_A 246 AGHAPFR-EAPAEFDAYLARFIRDC 269 (279)
T ss_dssp CCSCHHH-HSHHHHHHHHHHHHHHH
T ss_pred CCcchHH-hCHHHHHHHHHHHHHHh
Confidence 9998653 34457888999999875
|
| >1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31 | Back alignment and structure |
|---|
Probab=99.68 E-value=5.1e-16 Score=152.05 Aligned_cols=180 Identities=15% Similarity=0.124 Sum_probs=122.6
Q ss_pred CcEEEEEcCCCCCCCCccchHHHH-HHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~-~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
.|+||++||.+.... ..|...+. .|+++||.|+++|+|.+.. + ..+++.+.+..+++. + .
T Consensus 4 ~p~vv~~HG~~~~~~-~~~~~~~~~~l~~~g~~v~~~d~~~~~~---------~------~~~~~~~~~~~~~~~--~-~ 64 (192)
T 1uxo_A 4 TKQVYIIHGYRASST-NHWFPWLKKRLLADGVQADILNMPNPLQ---------P------RLEDWLDTLSLYQHT--L-H 64 (192)
T ss_dssp CCEEEEECCTTCCTT-STTHHHHHHHHHHTTCEEEEECCSCTTS---------C------CHHHHHHHHHTTGGG--C-C
T ss_pred CCEEEEEcCCCCCcc-hhHHHHHHHHHHhCCcEEEEecCCCCCC---------C------CHHHHHHHHHHHHHh--c-c
Confidence 478999999776532 15666564 6889999999999993211 1 355555555555444 2 5
Q ss_pred CcEEEEEecchHHHHHHHHHhCCC--ceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhh
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHS 748 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (826)
+++.++|||+||.+++.++.++|+ +++++|+.+|...... .+.... .+...+.
T Consensus 65 ~~~~l~G~S~Gg~~a~~~a~~~~~~~~v~~~v~~~~~~~~~~--------~~~~~~--------~~~~~~~--------- 119 (192)
T 1uxo_A 65 ENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLP--------TLQMLD--------EFTQGSF--------- 119 (192)
T ss_dssp TTEEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCT--------TCGGGG--------GGTCSCC---------
T ss_pred CCEEEEEeCccHHHHHHHHHHhcccCCccEEEEeccCCCccc--------cchhhh--------hhhhcCC---------
Confidence 789999999999999999999999 9999999998654211 010000 0111110
Q ss_pred cCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCC--CHHHHHHHHHHHHH
Q 003363 749 KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ--SDFESFLNIGLWFK 822 (826)
Q Consensus 749 ~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~--~~~~~~~~i~~w~~ 822 (826)
....+.++++|+|+++|++|..+|++.+..+.+.+ . .+++++++++|.+.... ...++...+.+|++
T Consensus 120 --~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~-~----~~~~~~~~~gH~~~~~~~~~~~~~~~~l~~~l~ 188 (192)
T 1uxo_A 120 --DHQKIIESAKHRAVIASKDDQIVPFSFSKDLAQQI-D----AALYEVQHGGHFLEDEGFTSLPIVYDVLTSYFS 188 (192)
T ss_dssp --CHHHHHHHEEEEEEEEETTCSSSCHHHHHHHHHHT-T----CEEEEETTCTTSCGGGTCSCCHHHHHHHHHHHH
T ss_pred --CHHHHHhhcCCEEEEecCCCCcCCHHHHHHHHHhc-C----ceEEEeCCCcCcccccccccHHHHHHHHHHHHH
Confidence 01223456689999999999999999998888877 3 68999999999876432 22234444445544
|
| >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-16 Score=180.59 Aligned_cols=232 Identities=15% Similarity=0.150 Sum_probs=145.1
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcc
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~ 650 (826)
.+|..++.... ++.|+||++||++.. ...|...+..|+++||.|+++|+||.+.+.. +......
T Consensus 245 ~dg~~l~~~~~--------g~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~D~~G~G~S~~------~~~~~~~ 308 (555)
T 3i28_A 245 KPRVRLHFVEL--------GSGPAVCLCHGFPES--WYSWRYQIPALAQAGYRVLAMDMKGYGESSA------PPEIEEY 308 (555)
T ss_dssp ETTEEEEEEEE--------CSSSEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTTSTTSCC------CSCGGGG
T ss_pred CCCcEEEEEEc--------CCCCEEEEEeCCCCc--hhHHHHHHHHHHhCCCEEEEecCCCCCCCCC------CCCcccc
Confidence 35677764433 145899999998765 4577788899999999999999999544321 1111223
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhcc-----CCCCCCch----
Q 003363 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-----TTDIPDWC---- 721 (826)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~-----~~~~~~~~---- 721 (826)
..+++.+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.+|......... ....+.+.
T Consensus 309 ~~~~~~~d~~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (555)
T 3i28_A 309 CMEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPLESIKANPVFDYQLY 386 (555)
T ss_dssp SHHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCCTTSCHHHHHHTCGGGHHHHH
T ss_pred cHHHHHHHHHHHHHH--cCCCcEEEEEecHHHHHHHHHHHhChHheeEEEEEccCCCCCCcccchHHHHhcCCccchhHH
Confidence 355555555444444 2457899999999999999999999999999999887532100000 00000000
Q ss_pred ------------------hhhhccCc---------------------CCccCCCCCChhhHHHHh---------------
Q 003363 722 ------------------YVESYGSK---------------------GKDSFTESPSVEDLTRFH--------------- 747 (826)
Q Consensus 722 ------------------~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~--------------- 747 (826)
+...+... ...........+....+.
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (555)
T 3i28_A 387 FQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWY 466 (555)
T ss_dssp HHSTTHHHHHHHHCHHHHHHHHSCCTTSCCCCCSSHHHHTSSSTTSCSSCCCCTTCCHHHHHHHHHHHTTTTTHHHHHTT
T ss_pred hhCCCchHHHHhhhHHHHHHHHhccccccccccccccccccccccCccccccccccCHHHHHHHHHHHhcccchhHHHHH
Confidence 00000000 000000000111111110
Q ss_pred -------hcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 003363 748 -------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 820 (826)
Q Consensus 748 -------~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w 820 (826)
..+....+.++++|+|+++|++|..+|++.+..+++.+. .+++++++++||..... ...++.+.+.+|
T Consensus 467 ~~~~~~~~~~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~e-~p~~~~~~i~~f 541 (555)
T 3i28_A 467 RNMERNWKWACKSLGRKILIPALMVTAEKDFVLVPQMSQHMEDWIP----HLKRGHIEDCGHWTQMD-KPTEVNQILIKW 541 (555)
T ss_dssp SCHHHHHHHHHTTTTCCCCSCEEEEEETTCSSSCGGGGTTGGGTCT----TCEEEEETTCCSCHHHH-SHHHHHHHHHHH
T ss_pred HhccccchhhccccccccccCEEEEEeCCCCCcCHHHHHHHHhhCC----CceEEEeCCCCCCcchh-CHHHHHHHHHHH
Confidence 012233456889999999999999999998887776664 37899999999976543 345788899999
Q ss_pred HHHHc
Q 003363 821 FKKYC 825 (826)
Q Consensus 821 ~~~~l 825 (826)
|+++.
T Consensus 542 l~~~~ 546 (555)
T 3i28_A 542 LDSDA 546 (555)
T ss_dssp HHHHT
T ss_pred HHhcc
Confidence 98864
|
| >3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-16 Score=167.29 Aligned_cols=229 Identities=14% Similarity=0.175 Sum_probs=140.2
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcch
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~ 651 (826)
+|..+++...- .++.|.||++||.+.+ ...|...+..|++ +|.|+++|+|| +|.+.. + .....
T Consensus 15 ~g~~l~y~~~G------~g~~~pvvllHG~~~~--~~~w~~~~~~L~~-~~~via~Dl~G---~G~S~~---~--~~~~~ 77 (316)
T 3afi_E 15 LGSSMAYRETG------AQDAPVVLFLHGNPTS--SHIWRNILPLVSP-VAHCIAPDLIG---FGQSGK---P--DIAYR 77 (316)
T ss_dssp TTEEEEEEEES------CTTSCEEEEECCTTCC--GGGGTTTHHHHTT-TSEEEEECCTT---STTSCC---C--SSCCC
T ss_pred CCEEEEEEEeC------CCCCCeEEEECCCCCc--hHHHHHHHHHHhh-CCEEEEECCCC---CCCCCC---C--CCCCC
Confidence 45566544432 1223589999998765 4577777888865 49999999999 444421 1 11235
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccc---hhhhc----------------
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN---LALMV---------------- 712 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~---~~~~~---------------- 712 (826)
++++.+.+..+++. ++.+++.|+||||||.+++.+|.++|++++++|+.++... +....
T Consensus 78 ~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (316)
T 3afi_E 78 FFDHVRYLDAFIEQ--RGVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFMEFIRPMPTWQDFHHTEVAEEQDHAEAARA 155 (316)
T ss_dssp HHHHHHHHHHHHHH--TTCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEECCCBSSGGGTTCCCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--cCCCCEEEEEeCccHHHHHHHHHHCHHhhhheeeeccCCCcchhhhccchhhccccccchhHHH
Confidence 66666666666665 3457899999999999999999999999999999876321 10000
Q ss_pred --cCCCCCCch--hhh---hccCcCCcc-CCCCCChhhHHHHh-----------------hcCc--------------cc
Q 003363 713 --GTTDIPDWC--YVE---SYGSKGKDS-FTESPSVEDLTRFH-----------------SKSP--------------IS 753 (826)
Q Consensus 713 --~~~~~~~~~--~~~---~~~~~~~~~-~~~~~~~~~~~~~~-----------------~~sp--------------~~ 753 (826)
.....+... ... .+....... .......+..+.+. .... ..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (316)
T 3afi_E 156 VFRKFRTPGEGEAMILEANAFVERVLPGGIVRKLGDEEMAPYRTPFPTPESRRPVLAFPRELPIAGEPADVYEALQSAHA 235 (316)
T ss_dssp HHHHHTSTTHHHHHHTTSCHHHHTTTGGGCSSCCCHHHHHHHHTTCCSTGGGHHHHHTGGGSCBTTBSHHHHHHHHHHHH
T ss_pred HHHHhcCCchhhHHHhccchHHHHhcccccCCCCCHHHHHHHHhhcCCccchhHHHHHHHhccccccchhhhhHHHHHHH
Confidence 000000000 000 000000000 00000001111110 0000 01
Q ss_pred ccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 754 HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 754 ~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
.+.++++|+|+++|++|..+|++.++.+.+.+.. .++++++++||....+ ...++.+.|.+||++.
T Consensus 236 ~l~~i~~P~Lvi~G~~D~~~~~~~~~~~~~~~p~----~~~~~i~~~GH~~~~e-~p~~~~~~i~~fl~~~ 301 (316)
T 3afi_E 236 ALAASSYPKLLFTGEPGALVSPEFAERFAASLTR----CALIRLGAGLHYLQED-HADAIGRSVAGWIAGI 301 (316)
T ss_dssp HHHHCCSCEEEEEEEECSSSCHHHHHHHHHHSSS----EEEEEEEEECSCHHHH-HHHHHHHHHHHHHHHH
T ss_pred hhhccCCCeEEEecCCCCccCHHHHHHHHHhCCC----CeEEEcCCCCCCchhh-CHHHHHHHHHHHHhhc
Confidence 2346899999999999999999888888777654 7999999999986544 3447888899999764
|
| >2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural mycobacterium tuberculosis structural proteomics project, X hydrolase; 2.10A {Mycobacterium tuberculosis} PDB: 2zjf_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.8e-16 Score=167.32 Aligned_cols=122 Identities=20% Similarity=0.260 Sum_probs=89.1
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcc
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~ 650 (826)
.+|..+++....|+ ....|+||++||.+.. ...|...+..|+++||.|+++|+||.+. +.. +......
T Consensus 10 ~~g~~l~y~~~G~~----~~~~~~vv~~hG~~~~--~~~~~~~~~~l~~~g~~vi~~d~~g~g~---s~~---~~~~~~~ 77 (356)
T 2e3j_A 10 CRGTRIHAVADSPP----DQQGPLVVLLHGFPES--WYSWRHQIPALAGAGYRVVAIDQRGYGR---SSK---YRVQKAY 77 (356)
T ss_dssp ETTEEEEEEEECCT----TCCSCEEEEECCTTCC--GGGGTTTHHHHHHTTCEEEEECCTTSTT---SCC---CCSGGGG
T ss_pred cCCeEEEEEEecCC----CCCCCEEEEECCCCCc--HHHHHHHHHHHHHcCCEEEEEcCCCCCC---CCC---CCccccc
Confidence 35677877776654 2346889999997755 4567778888999999999999999543 321 1111123
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCcc
Q 003363 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (826)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 706 (826)
...++.+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.++..
T Consensus 78 ~~~~~~~~~~~~~~~--l~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 131 (356)
T 2e3j_A 78 RIKELVGDVVGVLDS--YGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPF 131 (356)
T ss_dssp SHHHHHHHHHHHHHH--TTCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCC
T ss_pred CHHHHHHHHHHHHHH--cCCCCeEEEEECHhHHHHHHHHHhCcHhhcEEEEECCcc
Confidence 455555555555554 456789999999999999999999999999999988654
|
| >3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.5e-16 Score=161.17 Aligned_cols=231 Identities=15% Similarity=0.218 Sum_probs=132.8
Q ss_pred ccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
...+|..+++..+.+.+ +.|.||++||.+.. ...|...+..|++ ||.|+++|+||.| .+... ....
T Consensus 11 ~~~~g~~l~~~~~g~~~-----~~~~vvllHG~~~~--~~~~~~~~~~L~~-~~~vi~~Dl~G~G---~S~~~---~~~~ 76 (285)
T 3bwx_A 11 TSSDGLRLHFRAYEGDI-----SRPPVLCLPGLTRN--ARDFEDLATRLAG-DWRVLCPEMRGRG---DSDYA---KDPM 76 (285)
T ss_dssp ECTTSCEEEEEEECBCT-----TSCCEEEECCTTCC--GGGGHHHHHHHBB-TBCEEEECCTTBT---TSCCC---SSGG
T ss_pred ecCCCceEEEEEcCCCC-----CCCcEEEECCCCcc--hhhHHHHHHHhhc-CCEEEeecCCCCC---CCCCC---CCcc
Confidence 34467778777665431 24679999997654 5578888888876 9999999999954 43211 1111
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCC--ccchhh------hccCC-CCCC
Q 003363 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP--LCNLAL------MVGTT-DIPD 719 (826)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p--~~~~~~------~~~~~-~~~~ 719 (826)
...++++.+.+..+++. +..+++.|+||||||.+++.+|.++|++++++|+.++ ...... +.... ....
T Consensus 77 ~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (285)
T 3bwx_A 77 TYQPMQYLQDLEALLAQ--EGIERFVAIGTSLGGLLTMLLAAANPARIAAAVLNDVGPEVSPEGLERIRGYVGQGRNFET 154 (285)
T ss_dssp GCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCHHHHHHHHHHTTCCCEESS
T ss_pred ccCHHHHHHHHHHHHHh--cCCCceEEEEeCHHHHHHHHHHHhCchheeEEEEecCCcccCcchhHHHHHHhcCCccccc
Confidence 22344433333333333 2346899999999999999999999999999998643 221100 00000 0001
Q ss_pred chhhhh-ccCcCCccCCCCCChhhHHHH----hhc----------Cc------------------ccccCCC-CCcEEEE
Q 003363 720 WCYVES-YGSKGKDSFTESPSVEDLTRF----HSK----------SP------------------ISHISKV-KTPTIFL 765 (826)
Q Consensus 720 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~----------sp------------------~~~~~~i-~~PvLii 765 (826)
|..... ........+.... ......+ ... ++ ...+.++ ++|+|++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii 233 (285)
T 3bwx_A 155 WMHAARALQESSGDVYPDWD-ITQWLRYAKRIMVLGSSGRIAFDYDMKIAEPFEAPVGATPQVDMWPLFDALATRPLLVL 233 (285)
T ss_dssp HHHHHHHHHHHHTTTSTTCC-HHHHHHHHHHHEEECTTSCEEESBCGGGGCCTTSCTTCCCSSCCHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHHhhhhcccccC-hHHHHHHHHhhheeCCCCceeeccCHHHHHHHhhhhhccccchhhHHHHHccCCCeEEE
Confidence 100000 0000000000000 0000000 000 00 0011223 7999999
Q ss_pred EeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 766 LGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 766 ~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+|++|..+++..+.++.+. ...++++++++||.....+. +.+..|.+||++
T Consensus 234 ~G~~D~~~~~~~~~~~~~~-----~~~~~~~i~~~gH~~~~e~p--~~~~~i~~fl~~ 284 (285)
T 3bwx_A 234 RGETSDILSAQTAAKMASR-----PGVELVTLPRIGHAPTLDEP--ESIAAIGRLLER 284 (285)
T ss_dssp EETTCSSSCHHHHHHHHTS-----TTEEEEEETTCCSCCCSCSH--HHHHHHHHHHTT
T ss_pred EeCCCCccCHHHHHHHHhC-----CCcEEEEeCCCCccchhhCc--hHHHHHHHHHHh
Confidence 9999999998877665544 45899999999998765443 234678899864
|
| >2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-16 Score=162.45 Aligned_cols=212 Identities=16% Similarity=0.169 Sum_probs=132.2
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCc
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 672 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 672 (826)
|.||++||.+.. ...|...+..|++. |.|+++|+||.| .+... ... ...++++.+.+..+++. ++.++
T Consensus 17 ~~vvllHG~~~~--~~~~~~~~~~L~~~-~~vi~~Dl~G~G---~S~~~---~~~-~~~~~~~~~dl~~~l~~--l~~~~ 84 (269)
T 2xmz_A 17 QVLVFLHGFLSD--SRTYHNHIEKFTDN-YHVITIDLPGHG---EDQSS---MDE-TWNFDYITTLLDRILDK--YKDKS 84 (269)
T ss_dssp EEEEEECCTTCC--GGGGTTTHHHHHTT-SEEEEECCTTST---TCCCC---TTS-CCCHHHHHHHHHHHHGG--GTTSE
T ss_pred CeEEEEcCCCCc--HHHHHHHHHHHhhc-CeEEEecCCCCC---CCCCC---CCC-ccCHHHHHHHHHHHHHH--cCCCc
Confidence 469999997765 45677778888765 999999999954 43211 010 23466666666666665 34578
Q ss_pred EEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhcc----CCCCCCc---------h-hhhhccCcCCccCCC--
Q 003363 673 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG----TTDIPDW---------C-YVESYGSKGKDSFTE-- 736 (826)
Q Consensus 673 v~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~----~~~~~~~---------~-~~~~~~~~~~~~~~~-- 736 (826)
+.|+||||||.+++.++.++|++++++|+.+|......... ......+ . +...+... ..+..
T Consensus 85 ~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 162 (269)
T 2xmz_A 85 ITLFGYSMGGRVALYYAINGHIPISNLILESTSPGIKEEANQLERRLVDDARAKVLDIAGIELFVNDWEKL--PLFQSQL 162 (269)
T ss_dssp EEEEEETHHHHHHHHHHHHCSSCCSEEEEESCCSCCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTS--GGGGGGG
T ss_pred EEEEEECchHHHHHHHHHhCchheeeeEEEcCCcccCCchhHHHHhhhhhHHHHhhccccHHHHHHHHHhC--ccccccc
Confidence 99999999999999999999999999999987543210000 0000000 0 00000000 00000
Q ss_pred -CC--------------ChhhH-HHHh------hcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEE
Q 003363 737 -SP--------------SVEDL-TRFH------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 794 (826)
Q Consensus 737 -~~--------------~~~~~-~~~~------~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 794 (826)
.. ..... ..+. ..+....+.++++|+|+++|++|..+|+.... +.+.+. .+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~-~~~~~~----~~~~ 237 (269)
T 2xmz_A 163 ELPVEIQHQIRQQRLSQSPHKMAKALRDYGTGQMPNLWPRLKEIKVPTLILAGEYDEKFVQIAKK-MANLIP----NSKC 237 (269)
T ss_dssp GSCHHHHHHHHHHHHTSCHHHHHHHHHHHSTTTSCCCGGGGGGCCSCEEEEEETTCHHHHHHHHH-HHHHST----TEEE
T ss_pred cCCHHHHHHHHHHHhccCcHHHHHHHHHHHhccCccHHHHHHhcCCCEEEEEeCCCcccCHHHHH-HHhhCC----CcEE
Confidence 00 00000 0010 01112356788999999999999998876643 554443 4899
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 795 IVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 795 ~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
++++++||.+.... ..++.+.|.+|+++.
T Consensus 238 ~~i~~~gH~~~~e~-p~~~~~~i~~fl~~~ 266 (269)
T 2xmz_A 238 KLISATGHTIHVED-SDEFDTMILGFLKEE 266 (269)
T ss_dssp EEETTCCSCHHHHS-HHHHHHHHHHHHHHH
T ss_pred EEeCCCCCChhhcC-HHHHHHHHHHHHHHh
Confidence 99999999876543 457888999999865
|
| >1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.6e-16 Score=161.18 Aligned_cols=217 Identities=18% Similarity=0.134 Sum_probs=133.7
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCC-C
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN-P 670 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d-~ 670 (826)
.|.||++||.+.+ ...|...+..|+++||.|+++|+||.|.+.... .....++++.+.+..+++. ++ .
T Consensus 4 ~~~vvllHG~~~~--~~~w~~~~~~L~~~g~rVia~Dl~G~G~S~~~~-------~~~~~~~~~a~dl~~~l~~--l~~~ 72 (273)
T 1xkl_A 4 GKHFVLVHGACHG--GWSWYKLKPLLEAAGHKVTALDLAASGTDLRKI-------EELRTLYDYTLPLMELMES--LSAD 72 (273)
T ss_dssp CCEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEECCCTTSTTCCCCG-------GGCCSHHHHHHHHHHHHHT--SCSS
T ss_pred CCeEEEECCCCCC--cchHHHHHHHHHhCCCEEEEecCCCCCCCccCc-------ccccCHHHHHHHHHHHHHH--hccC
Confidence 4679999997654 456888889999999999999999954332110 1123466666666556655 32 3
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchh---------hhccCCCCCCchhhh--hccC-----------
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA---------LMVGTTDIPDWCYVE--SYGS----------- 728 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~---------~~~~~~~~~~~~~~~--~~~~----------- 728 (826)
+++.|+||||||.+++.++.++|++++++|+.++..... .+........|.... .+..
T Consensus 73 ~~~~lvGhSmGG~va~~~a~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (273)
T 1xkl_A 73 EKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSMFFG 152 (273)
T ss_dssp SCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTSCCEEEECC
T ss_pred CCEEEEecCHHHHHHHHHHHhChHhheEEEEEeccCCCCCCcHHHHHHHhhccCChhhHHHHHHhhccCCCCCccccccC
Confidence 689999999999999999999999999999888642100 000000000000000 0000
Q ss_pred -cCC-ccCCCCCChhhHHHHh---hc-----------CcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCE
Q 003363 729 -KGK-DSFTESPSVEDLTRFH---SK-----------SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVET 792 (826)
Q Consensus 729 -~~~-~~~~~~~~~~~~~~~~---~~-----------sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~ 792 (826)
... ..+......+...... .. .........++|+|+++|++|..+|+..++.+.+.+.. .
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~p~~~~~~~~~~~p~----~ 228 (273)
T 1xkl_A 153 PKFLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNIGV----T 228 (273)
T ss_dssp HHHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSCEEEEEETTCTTTTHHHHHHHHHHHCC----S
T ss_pred HHHHHHHhhccCCHHHHHHHHHhcCCCchhhhhhhcccccchhhhCCCCeEEEEeCCccCCCHHHHHHHHHhCCC----C
Confidence 000 0000000001000000 00 00100111368999999999999999999888888754 5
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 793 KVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 793 ~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
+++++|++||....... .++.+.+.+|+++.
T Consensus 229 ~~~~i~~aGH~~~~e~P-~~~~~~i~~fl~~~ 259 (273)
T 1xkl_A 229 EAIEIKGADHMAMLCEP-QKLCASLLEIAHKY 259 (273)
T ss_dssp EEEEETTCCSCHHHHSH-HHHHHHHHHHHHHC
T ss_pred eEEEeCCCCCCchhcCH-HHHHHHHHHHHHHh
Confidence 89999999998764443 47888999999764
|
| >1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.4e-16 Score=162.62 Aligned_cols=224 Identities=14% Similarity=0.075 Sum_probs=138.0
Q ss_pred cEEEEEcCCCCCCCCccchH---HHHHHHHCCcEEEEECCCCCCCCchhhhhcCC--CCCCcchHHHH--HHHHHHHHHc
Q 003363 593 PLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP--GKVGSQDVNDV--LTAIDHVIDM 665 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~--~~~~~~~~~D~--~~~i~~l~~~ 665 (826)
|+||++||++.......|.. ..+.+++.||.|+++|.++...+.... .... +........+. .+++.++.++
T Consensus 30 ~~v~llHG~~~~~~~~~w~~~~~~~~~l~~~~~~vv~pd~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~l~~~i~~~ 108 (280)
T 1dqz_A 30 HAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYTDWY-QPSQSNGQNYTYKWETFLTREMPAWLQAN 108 (280)
T ss_dssp SEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCTTCTTSBCS-SSCTTTTCCSCCBHHHHHHTHHHHHHHHH
T ss_pred CEEEEECCCCCCCCcccccccCcHHHHHhcCCeEEEEECCCCCccccCCC-CCCccccccccccHHHHHHHHHHHHHHHH
Confidence 58999999753222334443 235677889999999988654332110 0000 00011223332 2344444443
Q ss_pred CCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHH
Q 003363 666 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR 745 (826)
Q Consensus 666 ~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (826)
..+++++++|+||||||++++.++.++|++|+++++.+|..+.........+.. .....+......+.+.+. ...
T Consensus 109 ~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~---~~~ 183 (280)
T 1dqz_A 109 KGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWWPTLIGL--AMNDSGGYNANSMWGPSS---DPA 183 (280)
T ss_dssp HCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTTSTTHHHHHHH--HHHHTTSCCHHHHHCSTT---SHH
T ss_pred cCCCCCceEEEEECHHHHHHHHHHHhCCchheEEEEecCcccccCcchhhhHHH--HhhhccCcCHHHhcCCCC---chh
Confidence 346778999999999999999999999999999999999876432100000000 000000000000001111 124
Q ss_pred HhhcCcccccCCC---CCcEEEEEeCCCC--------------CCCcHHHHHHHHHHHhCC-CCEEEEEeCCCCCCCCCC
Q 003363 746 FHSKSPISHISKV---KTPTIFLLGAQDL--------------RVPVSNGLQYARALREKG-VETKVIVFPNDVHGIERP 807 (826)
Q Consensus 746 ~~~~sp~~~~~~i---~~PvLii~G~~D~--------------~vp~~~~~~~~~~l~~~g-~~~~~~~~p~~~H~~~~~ 807 (826)
+...+|...+.++ .+|+++.||+.|. .++..++++++++|+++| +++++.++++++|.+.
T Consensus 184 ~~~~~p~~~~~~l~~~~~~~~l~~G~~D~~~~~~~~~~~~~~e~~~~~~~~~~~~~L~~~g~~~~~~~~~~~g~H~~~-- 261 (280)
T 1dqz_A 184 WKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTYAADGGRNGVFNFPPNGTHSWP-- 261 (280)
T ss_dssp HHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECCSCCCSSHH--
T ss_pred hhhcCHHHHHHHHHhcCCeEEEEeCCCCcccccccccchhhHHHHHHHHHHHHHHHHHhCCCCceEEEecCCCccChH--
Confidence 4556776555544 5899999999997 578899999999999999 9999999999999752
Q ss_pred CCHHHHHHHHHHHHHHHc
Q 003363 808 QSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 808 ~~~~~~~~~i~~w~~~~l 825 (826)
.....+...+.||.+.|
T Consensus 262 -~w~~~l~~~l~~l~~~l 278 (280)
T 1dqz_A 262 -YWNEQLVAMKADIQHVL 278 (280)
T ss_dssp -HHHHHHHHTHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHh
Confidence 12344566777777665
|
| >2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B- hydrolase fold, acyltransferase, acetyl coenzyme A, antibiotic biosynthesis; HET: COA; 2.2A {Acremonium chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=8.1e-17 Score=180.23 Aligned_cols=228 Identities=17% Similarity=0.219 Sum_probs=138.3
Q ss_pred CCcEEEEEcCCCCCCCCc-cchHHHH---HHHHCCcEEEEECCCCCCCCchhhhhcC-CC--C---C----CcchHHHHH
Q 003363 591 CDPLIVVLHGGPHSVSLS-SYSKSLA---FLSSVGYSLLIVNYRGSLGFGEEALQSL-PG--K---V----GSQDVNDVL 656 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~-~~~~~~~---~la~~G~~Vl~~d~rG~~g~G~~~~~~~-~~--~---~----~~~~~~D~~ 656 (826)
..|+||++||.+...... .|...+. .|...||.|+++|+||+ ++|.+..... +. . + ....++|+.
T Consensus 108 ~~p~vvllHG~~~~~~~~~~w~~~~~~~~~L~~~~~~Vi~~D~~G~-~~G~S~~~~~~~~~~~~~~~~~~f~~~t~~~~a 186 (444)
T 2vat_A 108 RDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGS-PFGSAGPCSPDPDAEGQRPYGAKFPRTTIRDDV 186 (444)
T ss_dssp SCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTC-SSSSSSTTSBCTTTC--CBCGGGCCCCCHHHHH
T ss_pred CCCeEEEECCCCcccchhhHHHHhcCccchhhccCCEEEEecCCCC-CCCCCCCCCCCcccccccccccccccccHHHHH
Confidence 458999999977664321 1544443 46678999999999994 1333221000 00 0 1 123567777
Q ss_pred HHHHHHHHcCCCCCCc-EEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhc-------c--CCCCCCch-----
Q 003363 657 TAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV-------G--TTDIPDWC----- 721 (826)
Q Consensus 657 ~~i~~l~~~~~~d~~r-v~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~-------~--~~~~~~~~----- 721 (826)
+.+..+++. ++.++ +.|+||||||.+++.++.++|++++++|+.++........ . ....+.|.
T Consensus 187 ~dl~~ll~~--l~~~~~~~lvGhSmGG~ial~~A~~~p~~v~~lVli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (444)
T 2vat_A 187 RIHRQVLDR--LGVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATSCRQSGWCAAWFETQRQCIYDDPKYLDGEYD 264 (444)
T ss_dssp HHHHHHHHH--HTCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCCSBCCHHHHHHHHHHHHHHHHSTTSGGGTCC
T ss_pred HHHHHHHHh--cCCccceEEEEECHHHHHHHHHHHhChHhhheEEEEeccccCCccchhHHHHHHHHHhcCCcccccccc
Confidence 777666665 34467 9999999999999999999999999999998865421000 0 00000000
Q ss_pred -------------------------hhhhccCcCCc-c----------------------CCCCC--ChhhH--------
Q 003363 722 -------------------------YVESYGSKGKD-S----------------------FTESP--SVEDL-------- 743 (826)
Q Consensus 722 -------------------------~~~~~~~~~~~-~----------------------~~~~~--~~~~~-------- 743 (826)
+...+...... . +.... ..+..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (444)
T 2vat_A 265 VDDQPVRGLETARKIANLTYKSKPAMDERFHMAPGVQAGRNISSQDAKKEINGTDSGNSHRAGQPIEAVSSYLRYQAQKF 344 (444)
T ss_dssp TTSCCHHHHHHHHHHHHHHTSCHHHHHHHSCCCCCCC---------------------------CGGGHHHHHHHHHHHH
T ss_pred ccCCcccchhHHHhhhhccccChHHHHHHhccCccccccccccccccccccccccccccccccCchhhHHHHHHHHHHHH
Confidence 00001100000 0 00000 00000
Q ss_pred -------------HHHhhc--------CcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeC-CCC
Q 003363 744 -------------TRFHSK--------SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP-NDV 801 (826)
Q Consensus 744 -------------~~~~~~--------sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p-~~~ 801 (826)
..+... +....+.++++|+|+++|++|..+|++.++++.+.+.+ +++++++ ++|
T Consensus 345 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~i~~PvLvi~G~~D~~~p~~~~~~l~~~~p~----~~~~~i~~~~G 420 (444)
T 2vat_A 345 AASFDANCYIAMTLKFDTHDISRGRAGSIPEALAMITQPALIICARSDGLYSFDEHVEMGRSIPN----SRLCVVDTNEG 420 (444)
T ss_dssp HHSSCHHHHHHHHHHHHTCBTTTTTCSSHHHHHTTCCSCEEEEECTTCSSSCHHHHHHHHHHSTT----EEEEECCCSCG
T ss_pred hhccCccHHHHHHHHhhhhhccccccccHHHHhhcCCCCEEEEEeCCCCCCCHHHHHHHHHHCCC----cEEEEeCCCCC
Confidence 000001 13345678999999999999999999999888888764 7999999 899
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 802 HGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 802 H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
|.....+ ..++...|.+||+++++
T Consensus 421 H~~~~e~-p~~~~~~i~~fL~~~l~ 444 (444)
T 2vat_A 421 HDFFVME-ADKVNDAVRGFLDQSLM 444 (444)
T ss_dssp GGHHHHT-HHHHHHHHHHHHTC---
T ss_pred cchHHhC-HHHHHHHHHHHHHHhcC
Confidence 9865433 45788899999988763
|
| >3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida antarctica} PDB: 2veo_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.2e-15 Score=162.50 Aligned_cols=245 Identities=14% Similarity=0.105 Sum_probs=152.5
Q ss_pred eeeccCCCee--EEEEEEecCCCCCCCCCcEEEEEcCCCCCC--CCcc----------------ch-HHHHHH-HHCCcE
Q 003363 566 ANLTKGAQKP--FEAIFVSSSHKKDCSCDPLIVVLHGGPHSV--SLSS----------------YS-KSLAFL-SSVGYS 623 (826)
Q Consensus 566 ~~~~~~~g~~--l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~--~~~~----------------~~-~~~~~l-a~~G~~ 623 (826)
+.+++.+|.+ ..+.++.|.+. ..+.|+|.|-||..+.. +..+ +. ..+..+ .++||+
T Consensus 80 Y~std~~G~p~~~~gtv~~P~~~--~~~~pvvs~~hgt~g~~~~CaPS~~~~~~~~~~~~~~~~~e~~~~~~~~l~~G~~ 157 (462)
T 3guu_A 80 YRTTNTQNEAVADVATVWIPAKP--ASPPKIFSYQVYEDATALDCAPSYSYLTGLDQPNKVTAVLDTPIIIGWALQQGYY 157 (462)
T ss_dssp EEEECTTSCEEEEEEEEEECSSC--CSSCEEEEEECCCCCCSGGGCHHHHHBSCSCCTTGGGGSTHHHHHHHHHHHTTCE
T ss_pred EEEECCCCCEEEEEEEEEecCCC--CCCCcEEEEeCCcccCCCCcCCccccccCCCccccchhhhhHHHHHHHHHhCCCE
Confidence 4556666755 78899999863 33589999999954322 1111 11 245566 899999
Q ss_pred EEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCC-CCcEEEEEecchHHHHHHHHHhC----CC-cee
Q 003363 624 LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN-PSKVTVVGGSHGGFLTTHLIGQA----PD-KFV 697 (826)
Q Consensus 624 Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d-~~rv~l~G~S~GG~~a~~~a~~~----p~-~~~ 697 (826)
|+++||+|.+. .+. .+.....++.++++.+.+...++ ..+++++|||+||..+++++... |+ .++
T Consensus 158 Vv~~Dy~G~G~---~y~------~~~~~~~~vlD~vrAa~~~~~~~~~~~v~l~G~S~GG~aal~aa~~~~~yapel~~~ 228 (462)
T 3guu_A 158 VVSSDHEGFKA---AFI------AGYEEGMAILDGIRALKNYQNLPSDSKVALEGYSGGAHATVWATSLAESYAPELNIV 228 (462)
T ss_dssp EEEECTTTTTT---CTT------CHHHHHHHHHHHHHHHHHHTTCCTTCEEEEEEETHHHHHHHHHHHHHHHHCTTSEEE
T ss_pred EEEecCCCCCC---ccc------CCcchhHHHHHHHHHHHHhccCCCCCCEEEEeeCccHHHHHHHHHhChhhcCccceE
Confidence 99999999543 221 11112234444555444432243 47999999999999999887654 34 588
Q ss_pred EEEecCCccchhhhccCCCCCCc------------------------------------------hhhhh---cc-CcCC
Q 003363 698 AAAARNPLCNLALMVGTTDIPDW------------------------------------------CYVES---YG-SKGK 731 (826)
Q Consensus 698 a~v~~~p~~~~~~~~~~~~~~~~------------------------------------------~~~~~---~~-~~~~ 731 (826)
+++..++..|+.......+...+ |..+. +. ....
T Consensus 229 g~~~~~~p~dl~~~~~~~~~~~~~g~~~~~l~Gl~~~yP~l~~~l~~~lt~~g~~~~~~~~~~~~C~~~~~~~~~~~~~~ 308 (462)
T 3guu_A 229 GASHGGTPVSAKDTFTFLNGGPFAGFALAGVSGLSLAHPDMESFIEARLNAKGQRTLKQIRGRGFCLPQVVLTYPFLNVF 308 (462)
T ss_dssp EEEEESCCCBHHHHHHHHTTSTTHHHHHHHHHHHHHHCHHHHHHHHTTBCHHHHHHHHHHTSTTCCHHHHHHHCTTCCGG
T ss_pred EEEEecCCCCHHHHHHHhccchhHHHHHHHHHhHHhhCcchhHHHHHHhCHHHHHHHHHHHhcCcchHHHHHhhccCCHH
Confidence 99999988876433211111000 00000 00 0000
Q ss_pred ccCCCCC---ChhhHHHHhhcCccc-----ccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCC
Q 003363 732 DSFTESP---SVEDLTRFHSKSPIS-----HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803 (826)
Q Consensus 732 ~~~~~~~---~~~~~~~~~~~sp~~-----~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~ 803 (826)
..+.+.. .....+.+.+...-. ...++++|+||+||.+|.+||+.+++++++++++.|.+++++.|++.+|.
T Consensus 309 ~~~~~~~~~~~p~~~~~l~~~~lg~~~~~~g~~~~~~PvlI~hG~~D~vVP~~~s~~l~~~l~~~G~~V~~~~y~~~~H~ 388 (462)
T 3guu_A 309 SLVNDTNLLNEAPIASILKQETVVQAEASYTVSVPKFPRFIWHAIPDEIVPYQPAATYVKEQCAKGANINFSPYPIAEHL 388 (462)
T ss_dssp GGBSCTTGGGSTTHHHHHHHSBCCTTTCSSCCCCCCSEEEEEEETTCSSSCHHHHHHHHHHHHHTTCEEEEEEESSCCHH
T ss_pred HHcCCCccccCHHHHHHHHhhcccccccccCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCeEEEEECcCCcc
Confidence 0111000 001111222222111 13467899999999999999999999999999999999999999999997
Q ss_pred CCCCCCHHHHHHHHHHHHHHHc
Q 003363 804 IERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 804 ~~~~~~~~~~~~~i~~w~~~~l 825 (826)
.... ..+..+++||++++
T Consensus 389 ~~~~----~~~~d~l~WL~~r~ 406 (462)
T 3guu_A 389 TAEI----FGLVPSLWFIKQAF 406 (462)
T ss_dssp HHHH----HTHHHHHHHHHHHH
T ss_pred Cchh----hhHHHHHHHHHHHh
Confidence 6422 33678899999876
|
| >2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-15 Score=162.42 Aligned_cols=120 Identities=20% Similarity=0.257 Sum_probs=82.4
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcch
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~ 651 (826)
+|..++..... +.|.||++||.+.. ...|...+..|+++||.|+++|+||.| .+..... .......
T Consensus 19 ~g~~l~y~~~G--------~g~~vvllHG~~~~--~~~w~~~~~~L~~~g~~via~Dl~G~G---~S~~~~~-~~~~~~~ 84 (328)
T 2cjp_A 19 NGLNMHLAELG--------EGPTILFIHGFPEL--WYSWRHQMVYLAERGYRAVAPDLRGYG---DTTGAPL-NDPSKFS 84 (328)
T ss_dssp TTEEEEEEEEC--------SSSEEEEECCTTCC--GGGGHHHHHHHHTTTCEEEEECCTTST---TCBCCCT-TCGGGGS
T ss_pred CCcEEEEEEcC--------CCCEEEEECCCCCc--hHHHHHHHHHHHHCCcEEEEECCCCCC---CCCCcCc-CCccccc
Confidence 46666544331 23789999997765 557888889999999999999999954 4321100 1112223
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCc
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~ 705 (826)
++++.+.+..+++.-..+.+++.|+||||||.+++.+|.++|++++++|+.++.
T Consensus 85 ~~~~a~dl~~~l~~l~~~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~ 138 (328)
T 2cjp_A 85 ILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSVH 138 (328)
T ss_dssp HHHHHHHHHHHHHHHCTTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEECHHHHHHHHHHHhChhheeEEEEEccC
Confidence 444444444444331112578999999999999999999999999999998753
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-14 Score=158.99 Aligned_cols=242 Identities=15% Similarity=0.128 Sum_probs=164.3
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
.+..++|||||++|++....+ ..+.+| ..++..+.+.....+ ..++|||||++|++....
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d----~~i~v~d~~~~~~~~~~~~~~~v----------~~~~~spdg~~l~~~~~~---- 94 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHS----NDVSIIDTATNNVIATVPAGSSP----------QGVAVSPDGKQVYVTNMA---- 94 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGG----TEEEEEETTTTEEEEEEECSSSE----------EEEEECTTSSEEEEEETT----
T ss_pred CcceEEECCCCCEEEEECCCC----CeEEEEECCCCeEEEEEECCCCc----------cceEECCCCCEEEEEECC----
Confidence 477899999999997765332 134455 355555555443333 789999999999886432
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (826)
...|++||+.+++.... ......+..++|+|||+.
T Consensus 95 ---------------------------------------~~~v~v~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~---- 129 (391)
T 1l0q_A 95 ---------------------------------------SSTLSVIDTTSNTVAGT--VKTGKSPLGLALSPDGKK---- 129 (391)
T ss_dssp ---------------------------------------TTEEEEEETTTTEEEEE--EECSSSEEEEEECTTSSE----
T ss_pred ---------------------------------------CCEEEEEECCCCeEEEE--EeCCCCcceEEECCCCCE----
Confidence 26799999999987665 344446778999999998
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
|++++. ....|+++|+ .+++...............|+|||++|+.....
T Consensus 130 l~~~~~--------------~~~~v~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~ 178 (391)
T 1l0q_A 130 LYVTNN--------------GDKTVSVINT-----------------VTKAVINTVSVGRSPKGIAVTPDGTKVYVANFD 178 (391)
T ss_dssp EEEEET--------------TTTEEEEEET-----------------TTTEEEEEEECCSSEEEEEECTTSSEEEEEETT
T ss_pred EEEEeC--------------CCCEEEEEEC-----------------CCCcEEEEEecCCCcceEEECCCCCEEEEEeCC
Confidence 877652 2347999998 555544443333446788999999988665543
Q ss_pred CCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003363 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (826)
+ ..|++||+.++..... +... ..+..+.|+|||+.|++.........|+.
T Consensus 179 ~----------~~v~~~d~~~~~~~~~----------~~~~----------~~~~~~~~~~~g~~l~~~~~~~~~~~v~~ 228 (391)
T 1l0q_A 179 S----------MSISVIDTVTNSVIDT----------VKVE----------AAPSGIAVNPEGTKAYVTNVDKYFNTVSM 228 (391)
T ss_dssp T----------TEEEEEETTTTEEEEE----------EECS----------SEEEEEEECTTSSEEEEEEECSSCCEEEE
T ss_pred C----------CEEEEEECCCCeEEEE----------EecC----------CCccceEECCCCCEEEEEecCcCCCcEEE
Confidence 2 5699999887543211 1000 12235689999998887765445678888
Q ss_pred EECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 473 VNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 473 vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
+|+.+++...............++++++.+++..+.. ..+.+.++.++
T Consensus 229 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d---~~v~v~d~~~~ 276 (391)
T 1l0q_A 229 IDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFX---NTVSVIDTATN 276 (391)
T ss_dssp EETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT---TEEEEEETTTT
T ss_pred EECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCC---CEEEEEECCCC
Confidence 9999887766555444455567899999887766433 45777776543
|
| >1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET: PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB: 1qtr_A* 1x2b_A* 1x2e_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-15 Score=158.35 Aligned_cols=229 Identities=14% Similarity=0.222 Sum_probs=130.6
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcch
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~ 651 (826)
+|..++.....+ ...|.||++||++.......+ ...+...||.|+++|+||.| .+.. +.......
T Consensus 23 ~g~~l~~~~~g~------~~g~~vvllHG~~~~~~~~~~---~~~~~~~~~~vi~~D~~G~G---~S~~---~~~~~~~~ 87 (317)
T 1wm1_A 23 DGHRIYWELSGN------PNGKPAVFIHGGPGGGISPHH---RQLFDPERYKVLLFDQRGCG---RSRP---HASLDNNT 87 (317)
T ss_dssp SSCEEEEEEEEC------TTSEEEEEECCTTTCCCCGGG---GGGSCTTTEEEEEECCTTST---TCBS---TTCCTTCS
T ss_pred CCcEEEEEEcCC------CCCCcEEEECCCCCcccchhh---hhhccccCCeEEEECCCCCC---CCCC---Cccccccc
Confidence 556665444332 123669999997754322112 23344579999999999954 4321 11112234
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh--------------------h
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--------------------M 711 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~--------------------~ 711 (826)
..++.+.+..+++. ++.+++.|+||||||.+++.+|.++|++++++|+.++...... +
T Consensus 88 ~~~~~~dl~~l~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (317)
T 1wm1_A 88 TWHLVADIERLREM--AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFTLRKQRLHWYYQDGASRFFPEKWERV 165 (317)
T ss_dssp HHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCHHHHHHHHTSSGGGTSHHHHHHH
T ss_pred HHHHHHHHHHHHHH--cCCCcEEEEEeCHHHHHHHHHHHHCChheeeeeEeccCCCchhhhhHHhhccchhhcHHHHHHH
Confidence 56666666666665 3457899999999999999999999999999999876432100 0
Q ss_pred ccCCCCCCc-----hhhhhccCc-----------------CCccCCCCC------Chhh---HH----HHh------hcC
Q 003363 712 VGTTDIPDW-----CYVESYGSK-----------------GKDSFTESP------SVED---LT----RFH------SKS 750 (826)
Q Consensus 712 ~~~~~~~~~-----~~~~~~~~~-----------------~~~~~~~~~------~~~~---~~----~~~------~~s 750 (826)
......... .+....... ........+ .... .. .+. ...
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (317)
T 1wm1_A 166 LSILSDDERKDVIAAYRQRLTSADPQVQLEAAKLWSVWEGETVTLLPSRESASFGEDDFALAFARIENHYFTHLGFLESD 245 (317)
T ss_dssp HTTSCTTGGGCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTTSSSSCCGGGGGGGCHHHHHHHHHHHHHHHHTGGGCSST
T ss_pred HhhccchhhcchHHHHHhhhcCCCccccccccccccccccchhhccCCcccccccccchhhhHHHhhhhhhhcccccccc
Confidence 000000000 000000000 000000000 0000 00 000 001
Q ss_pred --cccccCCCC-CcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 003363 751 --PISHISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 751 --p~~~~~~i~-~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~ 821 (826)
....+.+++ +|+|+++|++|..+|+..+..+.+.+.+ .++++++++||....++...++...+.+|+
T Consensus 246 ~~~~~~~~~i~~~P~lii~G~~D~~~~~~~~~~l~~~~p~----~~~~~i~~~gH~~~~~~~~~~~~~~i~~f~ 315 (317)
T 1wm1_A 246 DQLLRNVPLIRHIPAVIVHGRYDMACQVQNAWDLAKAWPE----AELHIVEGAGHSYDEPGILHQLMIATDRFA 315 (317)
T ss_dssp THHHHTGGGGTTSCEEEEEETTCSSSCHHHHHHHHHHCTT----SEEEEETTCCSSTTSHHHHHHHHHHHHHHT
T ss_pred hhhHhhcccccCCCEEEEEecCCCCCCHHHHHHHHhhCCC----ceEEEECCCCCCCCCcchHHHHHHHHHHHh
Confidence 123455674 9999999999999999998888887754 689999999997743322334445555554
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-15 Score=179.30 Aligned_cols=267 Identities=9% Similarity=0.111 Sum_probs=167.7
Q ss_pred eCCCCCeEEEEecCCCC-CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccC
Q 003363 161 PSPSGSKLLVVRNPENE-SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 238 (826)
Q Consensus 161 ~SPdG~~la~~~~~~~~-~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~ 238 (826)
++|||++++|+++.++. ...+|.+. .+++.+.+++...-..+. ...+..++|||||++|||.+.+.
T Consensus 79 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~---~~~~~~~~~SPDg~~la~~~~~~--------- 146 (710)
T 2xdw_A 79 HFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDG---TVALRGYAFSEDGEYFAYGLSAS--------- 146 (710)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTS---CEEEEEEEECTTSSEEEEEEEET---------
T ss_pred CEEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCC---CEEEEEEEECCCCCEEEEEEcCC---------
Confidence 34999999999876532 23667776 456666666543211110 01237899999999999997654
Q ss_pred CCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEee
Q 003363 239 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGW 318 (826)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~ 318 (826)
|. ....|+++|+++|+...+ +.....+..++|||||+. |+|++.
T Consensus 147 -------------------------G~-----~~~~i~v~d~~tg~~~~~--~~~~~~~~~~~wspDg~~----l~~~~~ 190 (710)
T 2xdw_A 147 -------------------------GS-----DWVTIKFMKVDGAKELPD--VLERVKFSCMAWTHDGKG----MFYNAY 190 (710)
T ss_dssp -------------------------TC-----SCEEEEEEETTTTEEEEE--EEEEECSCCEEECTTSSE----EEEEEC
T ss_pred -------------------------CC-----ceEEEEEEECCCCCCCcc--cccCcccceEEEEeCCCE----EEEEEE
Confidence 11 235899999999998765 222223567999999999 999875
Q ss_pred cCcce-eeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc--eecCCC---CccccCceecCCCCEEEEEecc
Q 003363 319 SSETR-KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLTES---ISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 319 ~~~~~-~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~Lt~~---~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
..... ..+.....++...||++++ .+++. +.+... ......+.|||||++|++.+.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~v~~~~l-----------------~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~ 253 (710)
T 2xdw_A 191 PQQDGKSDGTETSTNLHQKLYYHVL-----------------GTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIRE 253 (710)
T ss_dssp CCCSSCCSSSCCCCCCCCEEEEEET-----------------TSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEEC
T ss_pred CCccccccccccccCCCCEEEEEEC-----------------CCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEc
Confidence 43210 0011111234567999998 44442 233222 2335689999999999999875
Q ss_pred CCCCCCCCcccceEEEEeCCC------CC--CCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEe
Q 003363 393 SSVDSGAHSATDSLHRIDWPT------NG--NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 464 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~------~~--~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~ 464 (826)
.. ....+||++|+.+ +. .+.++... + .....|++||+.|++.+..
T Consensus 254 ~~------~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~-----------~----------~~~~~~s~dg~~l~~~s~~ 306 (710)
T 2xdw_A 254 GC------DPVNRLWYCDLQQESNGITGILKWVKLIDNF-----------E----------GEYDYVTNEGTVFTFKTNR 306 (710)
T ss_dssp SS------SSCCEEEEEEGGGSSSSSCSSCCCEEEECSS-----------S----------SCEEEEEEETTEEEEEECT
T ss_pred cC------CCccEEEEEECcccccccCCccceEEeeCCC-----------C----------cEEEEEeccCCEEEEEECC
Confidence 41 1147899999876 32 11111100 0 0122589999999998765
Q ss_pred CC-eEEEEEEECCCCc---EEEecCCCC--CeeeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 003363 465 GS-SQVIISVNVSSGE---LLRITPAES--NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 465 ~~-~~~l~~vdl~tg~---~~~lt~~~~--~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 521 (826)
++ ...|+.+|+++++ .+.|+.... .+....++ +++.+++..... .-.+|++.++.
T Consensus 307 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~lv~~~~~~-g~~~l~~~~~~ 367 (710)
T 2xdw_A 307 HSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHD-VKNTLQLHDLA 367 (710)
T ss_dssp TCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE-TTTEEEEEEEET-TEEEEEEEETT
T ss_pred CCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE-cCCEEEEEEEEC-CEEEEEEEECC
Confidence 53 6789999998875 466766543 23333444 467777766543 33568877763
|
| >3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase, catalysis, protonation state, AB initio calculations, substrate bindin; 1.05A {Hevea brasiliensis} SCOP: c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A 3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A 7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A 1dwp_A ... | Back alignment and structure |
|---|
Probab=99.66 E-value=4.6e-16 Score=160.23 Aligned_cols=215 Identities=15% Similarity=0.090 Sum_probs=132.5
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCC-C
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN-P 670 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d-~ 670 (826)
.|.||++||.+.+ ...|...+..|+++||.|+++|+||.|.+.... .....+++..+.+..+++. ++ .
T Consensus 3 ~~~vvllHG~~~~--~~~w~~~~~~L~~~g~~via~Dl~G~G~S~~~~-------~~~~~~~~~a~dl~~~l~~--l~~~ 71 (257)
T 3c6x_A 3 FAHFVLIHTICHG--AWIWHKLKPLLEALGHKVTALDLAASGVDPRQI-------EEIGSFDEYSEPLLTFLEA--LPPG 71 (257)
T ss_dssp CCEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTTSTTCSCCG-------GGCCSHHHHTHHHHHHHHT--SCTT
T ss_pred CCcEEEEcCCccC--cCCHHHHHHHHHhCCCEEEEeCCCCCCCCCCCc-------ccccCHHHHHHHHHHHHHh--cccc
Confidence 3679999997654 456888899999999999999999954432110 1113456666555555554 32 3
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccch-h--------hhccCCCCCCchh--hhhcc------------
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-A--------LMVGTTDIPDWCY--VESYG------------ 727 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~-~--------~~~~~~~~~~~~~--~~~~~------------ 727 (826)
+++.|+||||||.+++.++.++|++++++|+.++.... . .+... .+.|.. ...+.
T Consensus 72 ~~~~lvGhSmGG~va~~~a~~~p~~v~~lVl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (257)
T 3c6x_A 72 EKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEV--FPDWKDTTYFTYTKDGKEITGLKLG 149 (257)
T ss_dssp CCEEEEEEETHHHHHHHHHHHHGGGEEEEEEEEECCCCSSSCTTHHHHHHHHH--SCCCTTCEEEEEEETTEEEEEEECC
T ss_pred CCeEEEEECcchHHHHHHHHhCchhhheEEEEecccCCCCCcchhHHHHHhhc--CcchhhhhhhhccCCCCcccccccc
Confidence 68999999999999999999999999999988764210 0 00000 000000 00000
Q ss_pred CcCC-ccCCCCCChhhHHHHh-hcCc-------------ccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCE
Q 003363 728 SKGK-DSFTESPSVEDLTRFH-SKSP-------------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVET 792 (826)
Q Consensus 728 ~~~~-~~~~~~~~~~~~~~~~-~~sp-------------~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~ 792 (826)
.... ..+......+...... ...+ .......++|+|+++|++|..+|+..++.+.+.+.. .
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~p~~~~~~~~~~~~~----~ 225 (257)
T 3c6x_A 150 FTLLRENLYTLCGPEEYELAKMLTRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYKP----D 225 (257)
T ss_dssp HHHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHSCCCCTTTGGGSCEEEEECTTCSSSCHHHHHHHHHHSCC----S
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCccchhhhccccccChhhcCcccEEEEEeCCCcccCHHHHHHHHHHCCC----C
Confidence 0000 0000000111111100 0011 000011268999999999999999998888877753 6
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 793 KVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 793 ~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
+++++|++||....+.. .++.+.+.+|++++
T Consensus 226 ~~~~i~~~gH~~~~e~P-~~~~~~l~~f~~~~ 256 (257)
T 3c6x_A 226 KVYKVEGGDHKLQLTKT-KEIAEILQEVADTY 256 (257)
T ss_dssp EEEECCSCCSCHHHHSH-HHHHHHHHHHHHHC
T ss_pred eEEEeCCCCCCcccCCH-HHHHHHHHHHHHhc
Confidence 89999999998764443 47888899998754
|
| >2rau_A Putative esterase; NP_343859.1, putative lipase, structural genomics, joint CEN structural genomics, JCSG; HET: PG4 UNL; 1.85A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-16 Score=172.88 Aligned_cols=225 Identities=12% Similarity=0.126 Sum_probs=133.0
Q ss_pred CCCcEEEEEcCCCCCCCC---ccch-----------HHHHHHHHCCcEEEEECCCCCCCCchhhhhcCC--CCCC-cchH
Q 003363 590 SCDPLIVVLHGGPHSVSL---SSYS-----------KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP--GKVG-SQDV 652 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~---~~~~-----------~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~--~~~~-~~~~ 652 (826)
++.|+||++||++..... ..|. ..+..|+++||.|+++|+||.+........... ..+. ...+
T Consensus 48 ~~~~~vv~~hG~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~ 127 (354)
T 2rau_A 48 GGNDAVLILPGTWSSGEQLVTISWNGVHYTIPDYRKSIVLYLARNGFNVYTIDYRTHYVPPFLKDRQLSFTANWGWSTWI 127 (354)
T ss_dssp CCEEEEEEECCTTCCHHHHHHSEETTEECSCCCGGGCHHHHHHHTTEEEEEEECGGGGCCTTCCGGGGGGGTTCSHHHHH
T ss_pred CCCCEEEEECCCCCCccccccccccccccccccchhhHHHHHHhCCCEEEEecCCCCCCCCcccccccccccCCcHHHHH
Confidence 346899999997755210 0222 677889999999999999995433211100000 0111 2236
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhC-CCceeEEEecCCccchhhhccCC----------------
Q 003363 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALMVGTT---------------- 715 (826)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~p~~~~~~~~~~~---------------- 715 (826)
+|+.++++++.++ .+.+++.|+|||+||.+++.++.++ |++++++|+.++...........
T Consensus 128 ~d~~~~~~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (354)
T 2rau_A 128 SDIKEVVSFIKRD--SGQERIYLAGESFGGIAALNYSSLYWKNDIKGLILLDGGPTKHGIRPKFYTPEVNSIEEMEAKGI 205 (354)
T ss_dssp HHHHHHHHHHHHH--HCCSSEEEEEETHHHHHHHHHHHHHHHHHEEEEEEESCSCBCTTCC--CCCCSCSSHHHHHHHTC
T ss_pred HHHHHHHHHHHHh--cCCceEEEEEECHhHHHHHHHHHhcCccccceEEEecccccccCcccchhhhhhhhHHHhhhhcc
Confidence 7888888888776 3457899999999999999999998 99999999986532210000000
Q ss_pred -------CCC------------------------CchhhhhccCcCCccCC-CCCChhhH-HHH------------hhcC
Q 003363 716 -------DIP------------------------DWCYVESYGSKGKDSFT-ESPSVEDL-TRF------------HSKS 750 (826)
Q Consensus 716 -------~~~------------------------~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~------------~~~s 750 (826)
... .|.....+.......+. ........ ..+ ...+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (354)
T 2rau_A 206 YVIPSRGGPNNPIWSYALANPDMPSPDPKYKSISDFLMDSLYVTGSANPYDYPYSKKEDMFPILASFDPYWPYRLSLERD 285 (354)
T ss_dssp CEEECSSSTTCTHHHHHHHSTTSCCSSTTSSSHHHHHHHHHHHTTSCCTTSTTCCCHHHHHHHHHTSCSEEEHHHHHTTT
T ss_pred cccCCCchhhhHHHHHhccccccCccccchhhHHHHHHHhhhccccCCcccCCCccHHHHHHHHhhhccccccccccCcc
Confidence 000 00000000000000000 00001111 111 1123
Q ss_pred cccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCC--CCCHHHHHHHHHHHHHHH
Q 003363 751 PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER--PQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 751 p~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~--~~~~~~~~~~i~~w~~~~ 824 (826)
....+.++++|+|+++|++|.++|. .+ +.+ ....++++++++||.... ++...++...+.+||+++
T Consensus 286 ~~~~l~~i~~P~Lii~G~~D~~~p~-~~----~~l---~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~ 353 (354)
T 2rau_A 286 LKFDYEGILVPTIAFVSERFGIQIF-DS----KIL---PSNSEIILLKGYGHLDVYTGENSEKDVNSVVLKWLSQQ 353 (354)
T ss_dssp CCCCCTTCCCCEEEEEETTTHHHHB-CG----GGS---CTTCEEEEETTCCGGGGTSSTTHHHHTHHHHHHHHHHH
T ss_pred cccccccCCCCEEEEecCCCCCCcc-ch----hhh---ccCceEEEcCCCCCchhhcCCCcHHHHHHHHHHHHHhc
Confidence 3445678999999999999987653 22 222 235799999999997643 344568899999999875
|
| >1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-16 Score=165.78 Aligned_cols=219 Identities=15% Similarity=0.113 Sum_probs=133.3
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCc
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 672 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 672 (826)
|+||++||.+.. ...|...+..|++ +|.|+++|+||.|.+... ... ......+++..+.+..+++. ++.++
T Consensus 21 ~~vvllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~---~~~-~~~~~~~~~~a~dl~~~l~~--l~~~~ 91 (271)
T 1wom_A 21 ASIMFAPGFGCD--QSVWNAVAPAFEE-DHRVILFDYVGSGHSDLR---AYD-LNRYQTLDGYAQDVLDVCEA--LDLKE 91 (271)
T ss_dssp SEEEEECCTTCC--GGGGTTTGGGGTT-TSEEEECCCSCCSSSCCT---TCC-TTGGGSHHHHHHHHHHHHHH--TTCSC
T ss_pred CcEEEEcCCCCc--hhhHHHHHHHHHh-cCeEEEECCCCCCCCCCC---ccc-ccccccHHHHHHHHHHHHHH--cCCCC
Confidence 789999996654 4467666777765 799999999995443211 000 01112345555444444544 34578
Q ss_pred EEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh----hccCCCCCCc-hhhhhccCc-------CCc-cCCCCCC
Q 003363 673 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL----MVGTTDIPDW-CYVESYGSK-------GKD-SFTESPS 739 (826)
Q Consensus 673 v~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~----~~~~~~~~~~-~~~~~~~~~-------~~~-~~~~~~~ 739 (826)
+.|+||||||.+++.++.++|++++++|+.++...... .......... ......... ... .+.....
T Consensus 92 ~~lvGhS~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (271)
T 1wom_A 92 TVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPDR 171 (271)
T ss_dssp EEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCTTC
T ss_pred eEEEEeCHHHHHHHHHHHhCHHhhcceEEEcCCCcCCCCCchhccCCCHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999887421100 0000000000 000000000 000 0000000
Q ss_pred hhhHHH-------------------HhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 003363 740 VEDLTR-------------------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 800 (826)
Q Consensus 740 ~~~~~~-------------------~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~ 800 (826)
.+..+. ....+....+.++++|+|+++|++|..+|++.++.+.+.+.+ .++++++++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~~~~----~~~~~i~~~ 247 (271)
T 1wom_A 172 PEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHLPY----SSLKQMEAR 247 (271)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHTTCCSCEEEEEEETCSSSCHHHHHHHHHHSSS----EEEEEEEEE
T ss_pred hHHHHHHHHHHhcCCcHHHHHHHHHHhCcchHHhccccCCCEEEEEcCCCCcCCHHHHHHHHHHCCC----CEEEEeCCC
Confidence 000000 011122335678999999999999999999888877776653 799999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 801 VHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 801 ~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
||...... ..++.+.+.+|+++++
T Consensus 248 gH~~~~e~-p~~~~~~i~~fl~~~~ 271 (271)
T 1wom_A 248 GHCPHMSH-PDETIQLIGDYLKAHV 271 (271)
T ss_dssp SSCHHHHC-HHHHHHHHHHHHHHHC
T ss_pred CcCccccC-HHHHHHHHHHHHHhcC
Confidence 99865433 4578899999998874
|
| >3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase; 1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A 3pi6_A | Back alignment and structure |
|---|
Probab=99.66 E-value=5.4e-16 Score=163.17 Aligned_cols=227 Identities=11% Similarity=0.022 Sum_probs=137.6
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCc
Q 003363 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~ 649 (826)
.-+|..++..... ..|+||++||++.. ...|...+..|+++ |.|+++|+||.+..... ...
T Consensus 16 ~~~g~~l~~~~~g--------~~~~vv~lHG~~~~--~~~~~~~~~~L~~~-~~vi~~D~~G~G~S~~~--------~~~ 76 (301)
T 3kda_A 16 EVDGVKLHYVKGG--------QGPLVMLVHGFGQT--WYEWHQLMPELAKR-FTVIAPDLPGLGQSEPP--------KTG 76 (301)
T ss_dssp EETTEEEEEEEEE--------SSSEEEEECCTTCC--GGGGTTTHHHHTTT-SEEEEECCTTSTTCCCC--------SSC
T ss_pred eeCCeEEEEEEcC--------CCCEEEEECCCCcc--hhHHHHHHHHHHhc-CeEEEEcCCCCCCCCCC--------CCC
Confidence 3356777655442 34789999998765 45677788888887 99999999995443211 123
Q ss_pred chHHHHHHHHHHHHHcCCCCCCc-EEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC------CCCCCchh
Q 003363 650 QDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT------TDIPDWCY 722 (826)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~r-v~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~------~~~~~~~~ 722 (826)
..++++.+.+..+++. ++.++ +.|+|||+||.+++.++.++|++++++|+.+|.......... .....|..
T Consensus 77 ~~~~~~~~~l~~~l~~--l~~~~p~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (301)
T 3kda_A 77 YSGEQVAVYLHKLARQ--FSPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAPIPDARIYRFPAFTAQGESLVWHF 154 (301)
T ss_dssp SSHHHHHHHHHHHHHH--HCSSSCEEEEEETHHHHTTHHHHHHCGGGEEEEEEESSCCSSGGGGGSBSEETTEECSSTHH
T ss_pred ccHHHHHHHHHHHHHH--cCCCccEEEEEeCccHHHHHHHHHhChhhccEEEEEccCCCCCCccchhhhcchhhhhhhhH
Confidence 3456666666555554 23456 999999999999999999999999999999985321110000 00001100
Q ss_pred h---------hhccC--------cCCccCCC---CCChhhHHHHhh-------------------------cCcccccCC
Q 003363 723 V---------ESYGS--------KGKDSFTE---SPSVEDLTRFHS-------------------------KSPISHISK 757 (826)
Q Consensus 723 ~---------~~~~~--------~~~~~~~~---~~~~~~~~~~~~-------------------------~sp~~~~~~ 757 (826)
. ..... ........ ....+....+.. ......+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (301)
T 3kda_A 155 SFFAADDRLAETLIAGKERFFLEHFIKSHASNTEVFSERLLDLYARSYAKPHSLNASFEYYRALNESVRQNAELAKTRLQ 234 (301)
T ss_dssp HHHHCSTTHHHHHHTTCHHHHHHHHHHHTCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHTHHHHHHHHHHHTTSCBC
T ss_pred HHhhcCcchHHHHhccchHHHHHHHHHhccCCcccCCHHHHHHHHHHhccccccchHHHHHHhhccchhhcccchhhccc
Confidence 0 00000 00000000 001111111100 000112338
Q ss_pred CCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 758 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 758 i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
+++|+|+++|++| +++.....+.+.+ .++++++++++||.+.... ..++.+.|.+|+++.
T Consensus 235 i~~P~l~i~G~~D--~~~~~~~~~~~~~----~~~~~~~i~~~gH~~~~e~-p~~~~~~i~~~l~~~ 294 (301)
T 3kda_A 235 MPTMTLAGGGAGG--MGTFQLEQMKAYA----EDVEGHVLPGCGHWLPEEC-AAPMNRLVIDFLSRG 294 (301)
T ss_dssp SCEEEEEECSTTS--CTTHHHHHHHTTB----SSEEEEEETTCCSCHHHHT-HHHHHHHHHHHHTTS
T ss_pred cCcceEEEecCCC--CChhHHHHHHhhc----ccCeEEEcCCCCcCchhhC-HHHHHHHHHHHHhhC
Confidence 8999999999999 6666665554443 4589999999999875433 447888888888764
|
| >1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-15 Score=157.18 Aligned_cols=228 Identities=16% Similarity=0.186 Sum_probs=133.9
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcch
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~ 651 (826)
+|..++....- ..|.||++||.+.+ ...|...+..|++. |.|+++|+||. |.+... .........
T Consensus 17 ~g~~l~y~~~G--------~g~~lvllHG~~~~--~~~w~~~~~~L~~~-~~via~Dl~G~---G~S~~~-~~~~~~~~~ 81 (294)
T 1ehy_A 17 PDVKIHYVREG--------AGPTLLLLHGWPGF--WWEWSKVIGPLAEH-YDVIVPDLRGF---GDSEKP-DLNDLSKYS 81 (294)
T ss_dssp SSCEEEEEEEE--------CSSEEEEECCSSCC--GGGGHHHHHHHHTT-SEEEEECCTTS---TTSCCC-CTTCGGGGC
T ss_pred CCEEEEEEEcC--------CCCEEEEECCCCcc--hhhHHHHHHHHhhc-CEEEecCCCCC---CCCCCC-ccccccCcC
Confidence 45666554332 23679999998765 56788888888776 99999999994 444211 000001234
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccc-hh-hhcc-CCCCCCchh------
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN-LA-LMVG-TTDIPDWCY------ 722 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~-~~-~~~~-~~~~~~~~~------ 722 (826)
++++.+.+..+++. +..+++.|+||||||.+++.+|.++|++++++|+.++... .. .... ......|..
T Consensus 82 ~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (294)
T 1ehy_A 82 LDKAADDQAALLDA--LGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQPDFGPVYFGLGHVHESWYSQFHQLD 159 (294)
T ss_dssp HHHHHHHHHHHHHH--TTCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSCTTC-----------CCHHHHHTTCH
T ss_pred HHHHHHHHHHHHHH--cCCCCEEEEEeChhHHHHHHHHHhChhheeEEEEecCCCCCcchhhccchhccCceEEEecCcc
Confidence 66666666666665 3457899999999999999999999999999999986321 10 0000 000001100
Q ss_pred -hhhc--cCc---------CCcc-CC--CCCChhhHHHHh-----------------hc--Cccc-----ccCCCCCcEE
Q 003363 723 -VESY--GSK---------GKDS-FT--ESPSVEDLTRFH-----------------SK--SPIS-----HISKVKTPTI 763 (826)
Q Consensus 723 -~~~~--~~~---------~~~~-~~--~~~~~~~~~~~~-----------------~~--sp~~-----~~~~i~~PvL 763 (826)
.... ... .... .. .....+..+.+. .. .... .+.++++|+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~L 239 (294)
T 1ehy_A 160 MAVEVVGSSREVCKKYFKHFFDHWSYRDELLTEEELEVHVDNCMKPDNIHGGFNYYRANIRPDAALWTDLDHTMSDLPVT 239 (294)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHTSSSSCCSCHHHHHHHHHHHTSTTHHHHHHHHHHHHSSSSCCCCCTGGGSCBCSCEE
T ss_pred hhHHHhccchhHHHHHHHHHhhcccCCCCCCCHHHHHHHHHHhcCCcccchHHHHHHHHHhhhhhhcCCcccCcCCCCEE
Confidence 0000 000 0000 00 000111111110 00 0001 2337899999
Q ss_pred EEEeCCCCCCCc-HHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 003363 764 FLLGAQDLRVPV-SNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 764 ii~G~~D~~vp~-~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~ 821 (826)
+++|++|..+|. .....+.+.+. ..+++++|++||....+. ..++.+.|.+||
T Consensus 240 vi~G~~D~~~~~~~~~~~~~~~~~----~~~~~~i~~~gH~~~~e~-p~~~~~~i~~fl 293 (294)
T 1ehy_A 240 MIWGLGDTCVPYAPLIEFVPKYYS----NYTMETIEDCGHFLMVEK-PEIAIDRIKTAF 293 (294)
T ss_dssp EEEECCSSCCTTHHHHHHHHHHBS----SEEEEEETTCCSCHHHHC-HHHHHHHHHHHC
T ss_pred EEEeCCCCCcchHHHHHHHHHHcC----CCceEEeCCCCCChhhhC-HHHHHHHHHHHh
Confidence 999999999884 45555544433 489999999999865443 346777777775
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=9.4e-14 Score=149.61 Aligned_cols=283 Identities=6% Similarity=-0.023 Sum_probs=171.2
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCe
Q 003363 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 180 (826)
Q Consensus 101 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 180 (826)
....||||+++.+.... .... .....++.++. .+++.......+ ......+|||||+++++....+ ..
T Consensus 45 ~~~~s~dg~~l~~~~~~-~~~~-~~~~~v~~~d~--~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~v~~~~~---~~ 112 (353)
T 3vgz_A 45 EMAYSQQENALWLATSQ-SRKL-DKGGVVYRLDP--VTLEVTQAIHND-----LKPFGATINNTTQTLWFGNTVN---SA 112 (353)
T ss_dssp EEEEETTTTEEEEEECC-CTTT-EESEEEEEECT--TTCCEEEEEEES-----SCCCSEEEETTTTEEEEEETTT---TE
T ss_pred ceEECCCCCEEEEEcCC-CcCC-CCCccEEEEcC--CCCeEEEEEecC-----CCcceEEECCCCCEEEEEecCC---CE
Confidence 34558999988554322 1111 12456777664 333332221111 2366789999999887765532 24
Q ss_pred EEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCccee
Q 003363 181 QFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (826)
Q Consensus 181 ~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (826)
++.++ ..++....+.................++.|||||++|++....
T Consensus 113 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------------------------------- 161 (353)
T 3vgz_A 113 VTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG------------------------------- 161 (353)
T ss_dssp EEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES-------------------------------
T ss_pred EEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC-------------------------------
Confidence 55555 4556555555432210000000012568999999988776421
Q ss_pred ecCCCccCCCccCceEEEEEccCCceEeccCCC-CCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceE
Q 003363 260 EEDWGETYAGKRQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (826)
Q Consensus 260 ~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~-~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~ 338 (826)
....|+++|+++++.... .+ ....+..++|+|||+. |++.. ....|+
T Consensus 162 -----------~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~s~dg~~----l~~~~---------------~~~~i~ 209 (353)
T 3vgz_A 162 -----------KESVIWVVDGGNIKLKTA--IQNTGKMSTGLALDSEGKR----LYTTN---------------ADGELI 209 (353)
T ss_dssp -----------SSCEEEEEETTTTEEEEE--ECCCCTTCCCCEEETTTTE----EEEEC---------------TTSEEE
T ss_pred -----------CCceEEEEcCCCCceEEE--ecCCCCccceEEECCCCCE----EEEEc---------------CCCeEE
Confidence 135799999999887655 33 2334678899999997 76654 234788
Q ss_pred EEEcccccchhhhhhhhcCCCCCCcce-ecCC----CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 339 AVRVSLYKSEASELELKESSSEDLPVV-NLTE----SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~~-~Lt~----~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
.+|+ .+++.. .+.. .........|+|||++|+..... ...|+++|+.+
T Consensus 210 ~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----------~~~v~~~d~~~ 262 (353)
T 3vgz_A 210 TIDT-----------------ADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK----------AAEVLVVDTRN 262 (353)
T ss_dssp EEET-----------------TTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS----------SSEEEEEETTT
T ss_pred EEEC-----------------CCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC----------CCEEEEEECCC
Confidence 9998 555443 2222 12234457999999988655432 25799999877
Q ss_pred CCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeE
Q 003363 414 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWS 493 (826)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~ 493 (826)
++... .+..+ ....+.|+|||+.+|++.. ....|+.+|+.+++..............
T Consensus 263 ~~~~~----------~~~~~-----------~~~~~~~s~dg~~l~v~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 319 (353)
T 3vgz_A 263 GNILA----------KVAAP-----------ESLAVLFNPARNEAYVTHR--QAGKVSVIDAKSYKVVKTFDTPTHPNSL 319 (353)
T ss_dssp CCEEE----------EEECS-----------SCCCEEEETTTTEEEEEET--TTTEEEEEETTTTEEEEEEECCSEEEEE
T ss_pred CcEEE----------EEEcC-----------CCceEEECCCCCEEEEEEC--CCCeEEEEECCCCeEEEEEecCCCCCeE
Confidence 55321 11110 1235789999998877643 3346888899988877655444444556
Q ss_pred EEeecCCEEEEEEeC
Q 003363 494 LLTLDGDNIIAVSSS 508 (826)
Q Consensus 494 ~~s~dg~~l~~~~s~ 508 (826)
.|+++|+.+++...+
T Consensus 320 ~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 320 ALSADGKTLYVSVKQ 334 (353)
T ss_dssp EECTTSCEEEEEEEC
T ss_pred EEcCCCCEEEEEEcc
Confidence 789999988877765
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=164.72 Aligned_cols=248 Identities=11% Similarity=0.052 Sum_probs=156.5
Q ss_pred ccEEEEeCCCCCeEEEEecCCC-----CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeec
Q 003363 155 GASAVVPSPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 228 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~-----~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~ 228 (826)
.+..|++ ||++|||+....+ ....++.+. .+++.+++ ... ..+.|||||++|||.+.+
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~----------~~~~~SpDg~~la~~~~~ 79 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENA----------TMPRISPDGKKIAFMRAN 79 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESC----------EEEEECTTSSEEEEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccC----------CCeEECCCCCEEEEEEec
Confidence 4677888 9999999864321 133566655 45554444 223 689999999999998764
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCC
Q 003363 229 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308 (826)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~ 308 (826)
.. ....+||++|+++|+.+.+. .... +..+.|||||+.
T Consensus 80 ~~---------------------------------------~~~~~l~~~~~~~g~~~~l~--~~~~-~~~~~wspdg~~ 117 (347)
T 2gop_A 80 EE---------------------------------------KKVSEIWVADLETLSSKKIL--EAKN-IRSLEWNEDSRK 117 (347)
T ss_dssp TT---------------------------------------TTEEEEEEEETTTTEEEEEE--EESE-EEEEEECTTSSE
T ss_pred cC---------------------------------------CCcceEEEEECCCCceEEEE--cCCC-ccceeECCCCCE
Confidence 31 02367999999999988883 3333 788999999999
Q ss_pred CccEEEEEeecCcce-------e-----eeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc-eecCCCCcccc
Q 003363 309 LHQYLVFVGWSSETR-------K-----LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAF 375 (826)
Q Consensus 309 ~~~~lvf~~~~~~~~-------~-----~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~~~~~~ 375 (826)
|+|.+...... + .|..+.......||++|+ .+++. +.|+. . ...
T Consensus 118 ----l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~-----------------~~~~~~~~l~~-~-~~~ 174 (347)
T 2gop_A 118 ----LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT-----------------ESEEVIEEFEK-P-RFS 174 (347)
T ss_dssp ----EEEEEECCCC---------CCCC---------CEEEEEEEET-----------------TTTEEEEEEEE-E-TTC
T ss_pred ----EEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC-----------------CCCeEEeeecC-C-Ccc
Confidence 99987431000 0 010011112357999998 77777 77776 4 678
Q ss_pred CceecCCCCEEEEEeccCCCCCCCCcc-cceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccC
Q 003363 376 FPRFSPDGKFLVFLSAKSSVDSGAHSA-TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 454 (826)
Q Consensus 376 ~p~~SpDG~~l~f~s~~~~~~~g~~~~-~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~D 454 (826)
.+.||||| |+|.+...... .... ..+||.+| +++.+.++.. . . ...++||
T Consensus 175 ~~~~spdg--~~~~~~~~~~~--~~~~~~~~l~~~d--~~~~~~l~~~-~--------------------~--~~~~spd 225 (347)
T 2gop_A 175 SGIWHRDK--IVVNVPHREII--PQYFKFWDIYIWE--DGKEEKMFEK-V--------------------S--FYAVDSD 225 (347)
T ss_dssp EEEEETTE--EEEEEECCCSS--CCSSCCEEEEEEE--TTEEEEEEEE-E--------------------S--EEEEEEC
T ss_pred cccCCCCe--EEEEEeccccc--ccccccccEEEeC--CCceEEeccC-c--------------------c--eeeECCC
Confidence 89999999 77777543100 0001 45899998 4433222211 0 0 1124899
Q ss_pred CCEEEEEEEeC-----CeEEEEEEECCCCcEEEecCCC-CCeee-EEEeecCCEEEEEEeCCCCCCeEEEEe
Q 003363 455 GCTMLLSSIWG-----SSQVIISVNVSSGELLRITPAE-SNFSW-SLLTLDGDNIIAVSSSPVDVPQVKYGY 519 (826)
Q Consensus 455 g~~l~~~~~~~-----~~~~l~~vdl~tg~~~~lt~~~-~~~~~-~~~s~dg~~l~~~~s~~~~p~~l~~~~ 519 (826)
|+.|++.+... ....||.+| +++.++++... ..+.. ..|+ |+ +++...... -.+|| .+
T Consensus 226 g~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~-~~~l~-~~ 290 (347)
T 2gop_A 226 GERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEG-SVNLY-IW 290 (347)
T ss_dssp SSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE--EEEEEEETT-EEEEE-EE
T ss_pred CCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc--EEEEEecCC-cEEEE-Ec
Confidence 99998887543 246899999 78888887763 33332 5677 65 666554433 34566 55
|
| >2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei structural genomics consortium, TBSGC, hydrolase; 1.19A {Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-16 Score=164.26 Aligned_cols=226 Identities=15% Similarity=0.072 Sum_probs=138.4
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcch
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~ 651 (826)
+|..++...+. +.|+||++||.+.. ...|...+..|++ +|.|+++|+||.+. +..... .......
T Consensus 16 ~g~~l~~~~~g--------~~~~vv~lHG~~~~--~~~~~~~~~~l~~-~~~vi~~D~~G~G~---S~~~~~-~~~~~~~ 80 (297)
T 2qvb_A 16 AGKRMAYIDEG--------KGDAIVFQHGNPTS--SYLWRNIMPHLEG-LGRLVACDLIGMGA---SDKLSP-SGPDRYS 80 (297)
T ss_dssp TTEEEEEEEES--------SSSEEEEECCTTCC--GGGGTTTGGGGTT-SSEEEEECCTTSTT---SCCCSS-CSTTSSC
T ss_pred CCEEEEEEecC--------CCCeEEEECCCCch--HHHHHHHHHHHhh-cCeEEEEcCCCCCC---CCCCCC-ccccCcC
Confidence 56666654432 24899999997765 3456666667765 59999999999543 321100 0111135
Q ss_pred HHHHHHHHHHHHHcCCCCC-CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCC----------CCCC-
Q 003363 652 VNDVLTAIDHVIDMGLANP-SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT----------DIPD- 719 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~-~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~----------~~~~- 719 (826)
.+++.+.+..+++. ++. +++.|+|||+||.+++.++.++|++++++|+.+|........... ..+.
T Consensus 81 ~~~~~~~~~~~l~~--~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (297)
T 2qvb_A 81 YGEQRDFLFALWDA--LDLGDHVVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIVTPMTWADWPPAVRGVFQGFRSPQG 158 (297)
T ss_dssp HHHHHHHHHHHHHH--TTCCSCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECCSCBCGGGSCGGGHHHHHHHTSTTH
T ss_pred HHHHHHHHHHHHHH--cCCCCceEEEEeCchHHHHHHHHHhChHhhheeeEeccccCCccCCCCChHHHHHHHHHhcccc
Confidence 66666666666655 345 789999999999999999999999999999998865311000000 0000
Q ss_pred c-------hhhhhccCcCCccCCCCCChhhHH------------------HHhhc--------------CcccccCCCCC
Q 003363 720 W-------CYVESYGSKGKDSFTESPSVEDLT------------------RFHSK--------------SPISHISKVKT 760 (826)
Q Consensus 720 ~-------~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~--------------sp~~~~~~i~~ 760 (826)
. .+...+... ........+... .+... +....+.++++
T Consensus 159 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 235 (297)
T 2qvb_A 159 EPMALEHNIFVERVLPG---AILRQLSDEEMNHYRRPFVNGGEDRRPTLSWPRNLPIDGEPAEVVALVNEYRSWLEETDM 235 (297)
T ss_dssp HHHHHTTCHHHHTHHHH---TCSSCCCHHHHHHHHGGGCSSSGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHHCCS
T ss_pred hhhhccccHHHHHHHhc---cccccCCHHHHHHHHHHhcCcccchhhHHHHHHhccccCCchhhHHHHHHHHhhcccccc
Confidence 0 000000000 000000001111 11111 11234567899
Q ss_pred cEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 761 PTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 761 PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
|+|+++|++|..+|++....+.+.+. . +++++ ++||.+... ...++.+.|.+||+++
T Consensus 236 P~lii~G~~D~~~~~~~~~~~~~~~~----~-~~~~~-~~gH~~~~~-~p~~~~~~i~~fl~~~ 292 (297)
T 2qvb_A 236 PKLFINAEPGAIITGRIRDYVRSWPN----Q-TEITV-PGVHFVQED-SPEEIGAAIAQFVRRL 292 (297)
T ss_dssp CEEEEEEEECSSSCHHHHHHHHTSSS----E-EEEEE-EESSCGGGT-CHHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCcCCHHHHHHHHHHcC----C-eEEEe-cCccchhhh-CHHHHHHHHHHHHHHH
Confidence 99999999999999988776665543 3 78888 999986644 4558889999999875
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-15 Score=178.40 Aligned_cols=270 Identities=12% Similarity=0.120 Sum_probs=170.3
Q ss_pred cEEEEeCCCCCeEEEEecCCCC-CCeEEEEe-c---CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENE-SPIQFELW-S---QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~-~~~~~~i~-~---~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~ 230 (826)
...+.++|||++++|+++.++. ...+|.+. . ++..+.+++...-..+. +..+.+++|||||++|||.+.+.
T Consensus 109 ~~~~~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~---~~~~~~~~~SPDG~~la~~~~~~- 184 (741)
T 1yr2_A 109 ERFGLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDG---ATALDAWAASDDGRLLAYSVQDG- 184 (741)
T ss_dssp CEECCCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC-------EEEEEEEECTTSSEEEEEEEET-
T ss_pred cccCCCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCC---CEEEEeEEECCCCCEEEEEEcCC-
Confidence 3445667999999999976532 45677777 3 56667776643211110 01237899999999999987654
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003363 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
|. ....|+++|+++|+.... .........++|||| +.
T Consensus 185 ---------------------------------G~-----e~~~i~v~dl~tg~~~~~--~~~~~~~~~~~wspD-~~-- 221 (741)
T 1yr2_A 185 ---------------------------------GS-----DWRTVKFVGVADGKPLAD--ELKWVKFSGLAWLGN-DA-- 221 (741)
T ss_dssp ---------------------------------TC-----SEEEEEEEETTTCCEEEE--EEEEEESCCCEESTT-SE--
T ss_pred ---------------------------------CC-----ceEEEEEEECCCCCCCCc--cCCCceeccEEEECC-CE--
Confidence 11 236899999999987654 222223467899999 98
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc--eecCCCC---ccccCceecCCCCE
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLTESI---SSAFFPRFSPDGKF 385 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~Lt~~~---~~~~~p~~SpDG~~ 385 (826)
|+|++..... +.+.....+++..||++++ .++.. +.+.... .....+.|||||++
T Consensus 222 --l~~~~~~~~~-~~~~~~~~~~~~~v~~~~l-----------------gt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~ 281 (741)
T 1yr2_A 222 --LLYSRFAEPK-EGQAFQALNYNQTVWLHRL-----------------GTPQSADQPVFATPELPKRGHGASVSSDGRW 281 (741)
T ss_dssp --EEEEECCCC---------CCCCCEEEEEET-----------------TSCGGGCEEEECCTTCTTCEEEEEECTTSCE
T ss_pred --EEEEEecCcc-cccccccCCCCCEEEEEEC-----------------CCCchhCEEEeccCCCCeEEEEEEECCCCCE
Confidence 9998754321 1111122344568999998 44432 2333222 23678999999999
Q ss_pred EEEEeccCCCCCCCCcccceEEEEeCCCC--C-CCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEE
Q 003363 386 LVFLSAKSSVDSGAHSATDSLHRIDWPTN--G-NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 462 (826)
Q Consensus 386 l~f~s~~~~~~~g~~~~~~~l~~~d~~~~--~-~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~ 462 (826)
|+|.+.+.. ....+||++|+.++ + .+.++... + .. ...++|||+.|++.+
T Consensus 282 l~~~~~~~~------~~~~~l~~~d~~~~~~~~~~~l~~~~-----------~---------~~-~~~~~~dg~~l~~~s 334 (741)
T 1yr2_A 282 VVITSSEGT------DPVNTVHVARVTNGKIGPVTALIPDL-----------K---------AQ-WDFVDGVGDQLWFVS 334 (741)
T ss_dssp EEEEEECTT------CSCCEEEEEEEETTEECCCEEEECSS-----------S---------SC-EEEEEEETTEEEEEE
T ss_pred EEEEEEccC------CCcceEEEEECCCCCCcccEEecCCC-----------C---------ce-EEEEeccCCEEEEEE
Confidence 999987641 13568999998875 3 22222111 0 01 112568999999987
Q ss_pred EeCC-eEEEEEEECCCC--cEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 003363 463 IWGS-SQVIISVNVSSG--ELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 463 ~~~~-~~~l~~vdl~tg--~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 521 (826)
...+ ...|+.+|++++ +.+.+++..... ...++..++.+++...... -.+|++.++.
T Consensus 335 ~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-l~~~~~~~~~lv~~~~~dg-~~~l~~~~~~ 394 (741)
T 1yr2_A 335 GDGAPLKKIVRVDLSGSTPRFDTVVPESKDN-LESVGIAGNRLFASYIHDA-KSQVLAFDLD 394 (741)
T ss_dssp CTTCTTCEEEEEECSSSSCEEEEEECCCSSE-EEEEEEEBTEEEEEEEETT-EEEEEEEETT
T ss_pred CCCCCCCEEEEEeCCCCccccEEEecCCCCe-EEEEEEECCEEEEEEEECC-EEEEEEEeCC
Confidence 7553 678999999884 577777654432 2345556777777765533 3568887753
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.5e-15 Score=176.86 Aligned_cols=269 Identities=13% Similarity=0.105 Sum_probs=168.6
Q ss_pred EEEEeCCCCCeEEEEecCCCC-CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 157 SAVVPSPSGSKLLVVRNPENE-SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 157 ~~~~~SPdG~~la~~~~~~~~-~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
..+.++|||++++|+++.++. ...+|.+. .+++.+.+++...-..+. +..+.+++|||||++|||.....
T Consensus 71 ~~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~---~~~~~~~~~SPDG~~la~~~~~~----- 142 (695)
T 2bkl_A 71 SVSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDG---TVSLGTWAVSWDGKKVAFAQKPN----- 142 (695)
T ss_dssp EECCCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSS---CEEEEEEEECTTSSEEEEEEEET-----
T ss_pred cCCCCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCC---CEEEEEEEECCCCCEEEEEECCC-----
Confidence 344566999999999876532 45677777 566777777653211110 01237899999999999987654
Q ss_pred CccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003363 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (826)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lv 314 (826)
| .....|+++|+++|+..... .........++|||||+. |+
T Consensus 143 -----------------------------G-----~~~~~i~v~dl~tg~~~~~~-~~~~~~~~~~~wspDg~~----l~ 183 (695)
T 2bkl_A 143 -----------------------------A-----ADEAVLHVIDVDSGEWSKVD-VIEGGKYATPKWTPDSKG----FY 183 (695)
T ss_dssp -----------------------------T-----CSCCEEEEEETTTCCBCSSC-CBSCCTTCCCEECTTSSE----EE
T ss_pred -----------------------------C-----CceEEEEEEECCCCCCcCCc-ccCcccccceEEecCCCE----EE
Confidence 1 13478999999999875111 111222368999999999 99
Q ss_pred EEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc--eecCCC---CccccCceecCCCCEEEEE
Q 003363 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLTES---ISSAFFPRFSPDGKFLVFL 389 (826)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~Lt~~---~~~~~~p~~SpDG~~l~f~ 389 (826)
|++...... +.....++...||++++ .++.. +.+... ......+.|||||++|++.
T Consensus 184 ~~~~d~~~~--~~~~~~~~~~~v~~~~l-----------------~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~ 244 (695)
T 2bkl_A 184 YEWLPTDPS--IKVDERPGYTTIRYHTL-----------------GTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVY 244 (695)
T ss_dssp EEECCCCTT--SCGGGGGGGCEEEEEET-----------------TSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEE
T ss_pred EEEecCCCC--CccccCCCCCEEEEEEC-----------------CCCchhceEEEecCCCCEEEEEEEECCCCCEEEEE
Confidence 988543200 00011234557999998 44442 233322 2356789999999999999
Q ss_pred eccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC-CeE
Q 003363 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-SSQ 468 (826)
Q Consensus 390 s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~-~~~ 468 (826)
+.+.. ...+||++|..+++.+.++.... ....+.| +||+ +++.+... ...
T Consensus 245 ~~~~~-------~~~~l~~~~~~~~~~~~l~~~~~--------------------~~~~~~~-~~g~-l~~~s~~~~~~~ 295 (695)
T 2bkl_A 245 ILRGW-------SENDVYWKRPGEKDFRLLVKGVG--------------------AKYEVHA-WKDR-FYVLTDEGAPRQ 295 (695)
T ss_dssp EEETT-------TEEEEEEECTTCSSCEEEEECSS--------------------CCEEEEE-ETTE-EEEEECTTCTTC
T ss_pred EeCCC-------CceEEEEEcCCCCceEEeecCCC--------------------ceEEEEe-cCCc-EEEEECCCCCCC
Confidence 87641 34689999876654433322111 1112344 7888 88876644 467
Q ss_pred EEEEEECCCCcE---EEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 003363 469 VIISVNVSSGEL---LRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 469 ~l~~vdl~tg~~---~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 521 (826)
.|+.+|+++++. +.++..........++..++.+++..... .-.+|++.++.
T Consensus 296 ~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~d-g~~~l~~~~~~ 350 (695)
T 2bkl_A 296 RVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKD-ATSEVRVATLK 350 (695)
T ss_dssp EEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEET-TEEEEEEEETT
T ss_pred EEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEEC-CEEEEEEEeCC
Confidence 999999988763 66665542222233444467777766543 34568887754
|
| >3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.4e-16 Score=160.87 Aligned_cols=218 Identities=15% Similarity=0.121 Sum_probs=133.2
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC
Q 003363 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (826)
...+.|+||++||++.. ...|...+..|++. |.|+++|+|| +|.+... .....++++.+.+..+++.
T Consensus 16 ~~~~~~~vv~~HG~~~~--~~~~~~~~~~l~~~-~~v~~~d~~G---~G~s~~~-----~~~~~~~~~~~~~~~~l~~-- 82 (267)
T 3fla_A 16 APDARARLVCLPHAGGS--ASFFFPLAKALAPA-VEVLAVQYPG---RQDRRHE-----PPVDSIGGLTNRLLEVLRP-- 82 (267)
T ss_dssp CTTCSEEEEEECCTTCC--GGGGHHHHHHHTTT-EEEEEECCTT---SGGGTTS-----CCCCSHHHHHHHHHHHTGG--
T ss_pred CCCCCceEEEeCCCCCC--chhHHHHHHHhccC-cEEEEecCCC---CCCCCCC-----CCCcCHHHHHHHHHHHHHh--
Confidence 34567999999997654 56787788888654 9999999999 5554321 1123466666665555554
Q ss_pred CCCCcEEEEEecchHHHHHHHHHhCCCc----eeEEEecCCccchhhhccCC-CCCCchhhhhccCcC--CccCCCCCC-
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPLCNLALMVGTT-DIPDWCYVESYGSKG--KDSFTESPS- 739 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~~p~~----~~a~v~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~- 739 (826)
++.+++.|+|||+||.+++.++.++|++ ++++++.++........... ......+...+.... .......+.
T Consensus 83 ~~~~~~~lvG~S~Gg~ia~~~a~~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (267)
T 3fla_A 83 FGDRPLALFGHSMGAIIGYELALRMPEAGLPAPVHLFASGRRAPSRYRDDDVRGASDERLVAELRKLGGSDAAMLADPEL 162 (267)
T ss_dssp GTTSCEEEEEETHHHHHHHHHHHHTTTTTCCCCSEEEEESCCCTTCCCCSCTTCCCHHHHHHHHHHTCHHHHHHHHSHHH
T ss_pred cCCCceEEEEeChhHHHHHHHHHhhhhhccccccEEEECCCCccccccchhhcccchHHHHHHHHHhcCcchhhccCHHH
Confidence 3457899999999999999999999986 88888887653221110000 000000000000000 000000000
Q ss_pred --------hhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHH
Q 003363 740 --------VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 811 (826)
Q Consensus 740 --------~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~ 811 (826)
...........+.. ..++++|+|+++|++|..+|++....+.+.+.. +++++++++ ||.+... ...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~---~~~~~~~~g-gH~~~~~-~~~ 236 (267)
T 3fla_A 163 LAMVLPAIRSDYRAVETYRHEP-GRRVDCPVTVFTGDHDPRVSVGEARAWEEHTTG---PADLRVLPG-GHFFLVD-QAA 236 (267)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCT-TCCBSSCEEEEEETTCTTCCHHHHHGGGGGBSS---CEEEEEESS-STTHHHH-THH
T ss_pred HHHHHHHHHHHHHhhhcccccc-cCcCCCCEEEEecCCCCCCCHHHHHHHHHhcCC---CceEEEecC-Cceeecc-CHH
Confidence 00001111111111 157889999999999999999888776665543 489999998 9986533 445
Q ss_pred HHHHHHHHHHHHH
Q 003363 812 ESFLNIGLWFKKY 824 (826)
Q Consensus 812 ~~~~~i~~w~~~~ 824 (826)
++.+.+.+||++.
T Consensus 237 ~~~~~i~~fl~~~ 249 (267)
T 3fla_A 237 PMIATMTEKLAGP 249 (267)
T ss_dssp HHHHHHHHHTC--
T ss_pred HHHHHHHHHhccc
Confidence 7788888888764
|
| >3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein, alpha/beta-hydrolases fold, structur genomics; HET: MSE; 1.66A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.3e-15 Score=145.32 Aligned_cols=171 Identities=12% Similarity=0.112 Sum_probs=122.4
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
+.|.||++||.+... ...|......+...+ +.++++|.. ....+++.+.+..+++. .+
T Consensus 16 ~~~~vv~~HG~~~~~-~~~~~~~~~~~~~~~---~~v~~~~~~---------------~~~~~~~~~~~~~~~~~--~~- 73 (191)
T 3bdv_A 16 QQLTMVLVPGLRDSD-DEHWQSHWERRFPHW---QRIRQREWY---------------QADLDRWVLAIRRELSV--CT- 73 (191)
T ss_dssp TTCEEEEECCTTCCC-TTSHHHHHHHHCTTS---EECCCSCCS---------------SCCHHHHHHHHHHHHHT--CS-
T ss_pred CCceEEEECCCCCCc-hhhHHHHHHHhcCCe---EEEeccCCC---------------CcCHHHHHHHHHHHHHh--cC-
Confidence 458899999977553 134444444333333 456776621 12356666666666655 33
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcC
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKS 750 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 750 (826)
+++.|+|||+||.+++.++.++|++++++|+.+|....... + +.
T Consensus 74 ~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~--------------~-----------~~----------- 117 (191)
T 3bdv_A 74 QPVILIGHSFGALAACHVVQQGQEGIAGVMLVAPAEPMRFE--------------I-----------DD----------- 117 (191)
T ss_dssp SCEEEEEETHHHHHHHHHHHTTCSSEEEEEEESCCCGGGGT--------------C-----------TT-----------
T ss_pred CCeEEEEEChHHHHHHHHHHhcCCCccEEEEECCCcccccc--------------C-----------cc-----------
Confidence 78999999999999999999999999999999987653210 0 00
Q ss_pred cccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCC--CCHHHHHHHHHHHHHHHc
Q 003363 751 PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP--QSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 751 p~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~--~~~~~~~~~i~~w~~~~l 825 (826)
...+.++++|+|+++|++|..+|++.++++.+.+ ..+++++++++|.+... ....+....+.+|+++..
T Consensus 118 -~~~~~~~~~P~lii~g~~D~~~~~~~~~~~~~~~-----~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~~ 188 (191)
T 3bdv_A 118 -RIQASPLSVPTLTFASHNDPLMSFTRAQYWAQAW-----DSELVDVGEAGHINAEAGFGPWEYGLKRLAEFSEILI 188 (191)
T ss_dssp -TSCSSCCSSCEEEEECSSBTTBCHHHHHHHHHHH-----TCEEEECCSCTTSSGGGTCSSCHHHHHHHHHHHHTTC
T ss_pred -ccccccCCCCEEEEecCCCCcCCHHHHHHHHHhc-----CCcEEEeCCCCcccccccchhHHHHHHHHHHHHHHhc
Confidence 0345678899999999999999999999998877 26899999999987542 133456688889987653
|
| >1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A* 2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A 3qmm_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.5e-15 Score=145.61 Aligned_cols=169 Identities=17% Similarity=0.102 Sum_probs=124.6
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCc---EEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY---SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~---~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (826)
.|+||++||.+.. ...|...+..|+++|| .|+++|++|.+.... ...+++.+.+..+++. +
T Consensus 3 ~~~vv~~HG~~~~--~~~~~~~~~~l~~~G~~~~~v~~~d~~g~g~s~~------------~~~~~~~~~~~~~~~~--~ 66 (181)
T 1isp_A 3 HNPVVMVHGIGGA--SFNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNY------------NNGPVLSRFVQKVLDE--T 66 (181)
T ss_dssp CCCEEEECCTTCC--GGGGHHHHHHHHHTTCCGGGEEECCCSCTTCCHH------------HHHHHHHHHHHHHHHH--H
T ss_pred CCeEEEECCcCCC--HhHHHHHHHHHHHcCCCCccEEEEecCCCCCchh------------hhHHHHHHHHHHHHHH--c
Confidence 4779999997654 5578888899999998 699999999543211 2355666666666665 3
Q ss_pred CCCcEEEEEecchHHHHHHHHHhC--CCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHH
Q 003363 669 NPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRF 746 (826)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (826)
+.+++.++|||+||.+++.++.++ |++++++|+.+|....... . .+ +.
T Consensus 67 ~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~v~~~v~~~~~~~~~~~------------~--------~~---~~------- 116 (181)
T 1isp_A 67 GAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTG------------K--------AL---PG------- 116 (181)
T ss_dssp CCSCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCS------------B--------CC---CC-------
T ss_pred CCCeEEEEEECccHHHHHHHHHhcCCCceEEEEEEEcCccccccc------------c--------cC---CC-------
Confidence 457899999999999999999988 8899999999987543210 0 00 00
Q ss_pred hhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 747 HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 747 ~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
. ....++|+|+++|++|..+|++.+. + ...+++++++++|...... . ++.+.+.+||.+.
T Consensus 117 --~-----~~~~~~p~l~i~G~~D~~v~~~~~~-----~----~~~~~~~~~~~gH~~~~~~-~-~~~~~i~~fl~~~ 176 (181)
T 1isp_A 117 --T-----DPNQKILYTSIYSSADMIVMNYLSR-----L----DGARNVQIHGVGHIGLLYS-S-QVNSLIKEGLNGG 176 (181)
T ss_dssp --S-----CTTCCCEEEEEEETTCSSSCHHHHC-----C----BTSEEEEESSCCTGGGGGC-H-HHHHHHHHHHTTT
T ss_pred --C-----CCccCCcEEEEecCCCccccccccc-----C----CCCcceeeccCchHhhccC-H-HHHHHHHHHHhcc
Confidence 0 0123579999999999999987532 2 3468899999999876444 3 6889999999764
|
| >1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-15 Score=161.14 Aligned_cols=228 Identities=11% Similarity=0.037 Sum_probs=139.6
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcc
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~ 650 (826)
.+|..++...+. +.|+||++||.+.. ...|...+..|++. |.|+++|+||.+. +..... ......
T Consensus 16 ~~g~~l~~~~~g--------~~~~vv~lHG~~~~--~~~~~~~~~~L~~~-~~vi~~D~~G~G~---S~~~~~-~~~~~~ 80 (302)
T 1mj5_A 16 IKGRRMAYIDEG--------TGDPILFQHGNPTS--SYLWRNIMPHCAGL-GRLIACDLIGMGD---SDKLDP-SGPERY 80 (302)
T ss_dssp ETTEEEEEEEES--------CSSEEEEECCTTCC--GGGGTTTGGGGTTS-SEEEEECCTTSTT---SCCCSS-CSTTSS
T ss_pred ECCEEEEEEEcC--------CCCEEEEECCCCCc--hhhhHHHHHHhccC-CeEEEEcCCCCCC---CCCCCC-CCcccc
Confidence 356666554432 24889999997755 44566666777655 8999999999543 321100 011124
Q ss_pred hHHHHHHHHHHHHHcCCCCC-CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCC----------CC-
Q 003363 651 DVNDVLTAIDHVIDMGLANP-SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD----------IP- 718 (826)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~-~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~----------~~- 718 (826)
..+++.+.+..+++. ++. +++.|+|||+||.+++.++.++|++++++|+.+|............ .+
T Consensus 81 ~~~~~~~~~~~~l~~--l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (302)
T 1mj5_A 81 AYAEHRDYLDALWEA--LDLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEWADFPEQDRDLFQAFRSQA 158 (302)
T ss_dssp CHHHHHHHHHHHHHH--TTCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCSCBCGGGSCGGGHHHHHHHHSTT
T ss_pred cHHHHHHHHHHHHHH--hCCCceEEEEEECCccHHHHHHHHHCHHHHhheeeecccCCchhhhhhhHHHHHHHHHHhccc
Confidence 566666666666665 344 7899999999999999999999999999999988653110000000 00
Q ss_pred Cc-------hhhhhccCcCCccCCCCCChhhHHH------------------Hhhc--------------CcccccCCCC
Q 003363 719 DW-------CYVESYGSKGKDSFTESPSVEDLTR------------------FHSK--------------SPISHISKVK 759 (826)
Q Consensus 719 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~--------------sp~~~~~~i~ 759 (826)
.. .+...+... ........+.... +... +....+.+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 235 (302)
T 1mj5_A 159 GEELVLQDNVFVEQVLPG---LILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADVVAIARDYAGWLSESP 235 (302)
T ss_dssp HHHHHTTTCHHHHTHHHH---TSSSCCCHHHHHHHHGGGCSSSGGGHHHHHTGGGSCBTTBSHHHHHHHHHHHHHHTTCC
T ss_pred hhhhhcChHHHHHHHHHh---cCcccCCHHHHHHHHHHhhcccccccchHHHHHhccccccchhhHHHHHHHHhhhhccC
Confidence 00 000000000 0000000010000 0010 1133467889
Q ss_pred CcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 760 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 760 ~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
+|+|+++|++|..+|++.++.+.+.+. . +++++ ++||.+... ...++.+.|.+|+.+..
T Consensus 236 ~P~l~i~g~~D~~~~~~~~~~~~~~~~----~-~~~~~-~~gH~~~~e-~p~~~~~~i~~fl~~~~ 294 (302)
T 1mj5_A 236 IPKLFINAEPGALTTGRMRDFCRTWPN----Q-TEITV-AGAHFIQED-SPDEIGAAIAAFVRRLR 294 (302)
T ss_dssp SCEEEEEEEECSSSSHHHHHHHTTCSS----E-EEEEE-EESSCGGGT-CHHHHHHHHHHHHHHHS
T ss_pred CCeEEEEeCCCCCCChHHHHHHHHhcC----C-ceEEe-cCcCccccc-CHHHHHHHHHHHHHhhc
Confidence 999999999999999987766655443 3 78888 999987644 45588899999998753
|
| >1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP: c.69.1.7 | Back alignment and structure |
|---|
Probab=99.63 E-value=8.9e-15 Score=155.16 Aligned_cols=117 Identities=19% Similarity=0.292 Sum_probs=78.6
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcch
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~ 651 (826)
+|..++.....+ ...|.||++||+++...... ....+...||.|+++|+||. |.+.. +.......
T Consensus 20 ~g~~l~y~~~G~------~~g~pvvllHG~~~~~~~~~---~~~~~~~~~~~vi~~D~~G~---G~S~~---~~~~~~~~ 84 (313)
T 1azw_A 20 DRHTLYFEQCGN------PHGKPVVMLHGGPGGGCNDK---MRRFHDPAKYRIVLFDQRGS---GRSTP---HADLVDNT 84 (313)
T ss_dssp SSCEEEEEEEEC------TTSEEEEEECSTTTTCCCGG---GGGGSCTTTEEEEEECCTTS---TTSBS---TTCCTTCC
T ss_pred CCCEEEEEecCC------CCCCeEEEECCCCCccccHH---HHHhcCcCcceEEEECCCCC---cCCCC---Cccccccc
Confidence 456665444432 12366899999765432211 12334457999999999994 44421 11112234
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCc
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~ 705 (826)
.+++.+.+..+++. ++.+++.|+||||||.+++.++.++|++++++|+.++.
T Consensus 85 ~~~~~~dl~~l~~~--l~~~~~~lvGhSmGg~ia~~~a~~~p~~v~~lvl~~~~ 136 (313)
T 1azw_A 85 TWDLVADIERLRTH--LGVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIF 136 (313)
T ss_dssp HHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred HHHHHHHHHHHHHH--hCCCceEEEEECHHHHHHHHHHHhChhheeEEEEeccc
Confidence 56666666666665 34568999999999999999999999999999998764
|
| >3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-15 Score=153.95 Aligned_cols=224 Identities=11% Similarity=0.106 Sum_probs=132.7
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcch
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~ 651 (826)
+|..++.....+ ...|+||++||.+.. ...|...+..|++ +|.|+++|+||. |.+... .....
T Consensus 7 ~g~~l~~~~~g~------~~~~~vv~lHG~~~~--~~~~~~~~~~L~~-~~~v~~~D~~G~---G~S~~~-----~~~~~ 69 (264)
T 3ibt_A 7 NGTLMTYSESGD------PHAPTLFLLSGWCQD--HRLFKNLAPLLAR-DFHVICPDWRGH---DAKQTD-----SGDFD 69 (264)
T ss_dssp TTEECCEEEESC------SSSCEEEEECCTTCC--GGGGTTHHHHHTT-TSEEEEECCTTC---STTCCC-----CSCCC
T ss_pred CCeEEEEEEeCC------CCCCeEEEEcCCCCc--HhHHHHHHHHHHh-cCcEEEEccccC---CCCCCC-----ccccC
Confidence 455555444322 235789999997765 4567778888854 599999999994 443211 22234
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhC-CCceeEEEecCCccchh-----hhccCCCCCCchhh-h
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLA-----LMVGTTDIPDWCYV-E 724 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~p~~~~~-----~~~~~~~~~~~~~~-~ 724 (826)
++++.+.+..+++. ++.+++.|+|||+||.+++.++.++ |++++++|+.+|..... .+........+... .
T Consensus 70 ~~~~~~~~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (264)
T 3ibt_A 70 SQTLAQDLLAFIDA--KGIRDFQMVSTSHGCWVNIDVCEQLGAARLPKTIIIDWLLQPHPGFWQQLAEGQHPTEYVAGRQ 147 (264)
T ss_dssp HHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHSCTTTSCEEEEESCCSSCCHHHHHHHHHTTCTTTHHHHHH
T ss_pred HHHHHHHHHHHHHh--cCCCceEEEecchhHHHHHHHHHhhChhhhheEEEecCCCCcChhhcchhhcccChhhHHHHHH
Confidence 66666666666655 3456899999999999999999999 99999999998755110 00000000001000 0
Q ss_pred hccCcCCccCCCCCChhhHHHH-------------------h-----hcCcccccCCCCCcEEEEEeCCCCCC--CcHHH
Q 003363 725 SYGSKGKDSFTESPSVEDLTRF-------------------H-----SKSPISHISKVKTPTIFLLGAQDLRV--PVSNG 778 (826)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~-------------------~-----~~sp~~~~~~i~~PvLii~G~~D~~v--p~~~~ 778 (826)
... ...+......+..+.+ . ..++...+.++++|+|++||..|... ++...
T Consensus 148 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~~~~~~~~~~~~ 224 (264)
T 3ibt_A 148 SFF---DEWAETTDNADVLNHLRNEMPWFHGEMWQRACREIEANYRTWGSPLDRMDSLPQKPEICHIYSQPLSQDYRQLQ 224 (264)
T ss_dssp HHH---HHHHTTCCCHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHSSHHHHHHTCSSCCEEEEEECCSCCHHHHHHH
T ss_pred HHH---HHhcccCCcHHHHHHHHHhhhhccchhHHHHHHHhccchhhccchhhcccccCCCeEEEEecCCccchhhHHHH
Confidence 000 0000000000000000 0 11223556789999999987554433 34444
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 779 LQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 779 ~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
..+.+.+ ...++++++++||..... ...++.+.|.+||+
T Consensus 225 ~~~~~~~----~~~~~~~i~~~gH~~~~e-~p~~~~~~i~~fl~ 263 (264)
T 3ibt_A 225 LEFAAGH----SWFHPRHIPGRTHFPSLE-NPVAVAQAIREFLQ 263 (264)
T ss_dssp HHHHHHC----TTEEEEECCCSSSCHHHH-CHHHHHHHHHHHTC
T ss_pred HHHHHhC----CCceEEEcCCCCCcchhh-CHHHHHHHHHHHHh
Confidence 4444443 347999999999976533 34467788888875
|
| >2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR family, developmental protei differentiation, neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus musculus} PDB: 2xmq_A 2xmr_A 2xms_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-15 Score=158.96 Aligned_cols=235 Identities=14% Similarity=0.162 Sum_probs=133.3
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH-----HHHHHHHCCcEEEEECCCCCCCCchhhhhcCC
Q 003363 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-----SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 644 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~-----~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~ 644 (826)
..+|..++...+.+. ....|+||++||.+.... ..|.. .+..|++ +|.|+++|+||.+ .+... .+
T Consensus 17 ~~~~~~l~y~~~G~~----~~~~p~vvllHG~~~~~~-~~~~~~~~~~~~~~L~~-~~~vi~~D~~G~G---~s~~~-~~ 86 (286)
T 2qmq_A 17 ETPYGSVTFTVYGTP----KPKRPAIFTYHDVGLNYK-SCFQPLFRFGDMQEIIQ-NFVRVHVDAPGME---EGAPV-FP 86 (286)
T ss_dssp EETTEEEEEEEESCC----CTTCCEEEEECCTTCCHH-HHHHHHHTSHHHHHHHT-TSCEEEEECTTTS---TTCCC-CC
T ss_pred ccCCeEEEEEeccCC----CCCCCeEEEeCCCCCCch-hhhhhhhhhchhHHHhc-CCCEEEecCCCCC---CCCCC-CC
Confidence 445677766555432 224689999999775521 11333 5666765 6999999999953 22110 01
Q ss_pred CCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhc--------c-CC
Q 003363 645 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV--------G-TT 715 (826)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~--------~-~~ 715 (826)
.......++++.+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.+|........ . ..
T Consensus 87 ~~~~~~~~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 164 (286)
T 2qmq_A 87 LGYQYPSLDQLADMIPCILQY--LNFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTS 164 (286)
T ss_dssp TTCCCCCHHHHHHTHHHHHHH--HTCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCCHHHHHHHHHHHTTS
T ss_pred CCCCccCHHHHHHHHHHHHHH--hCCCcEEEEEEChHHHHHHHHHHhChhheeeEEEECCCCcccchhhhhhhhhccccc
Confidence 111112455555555555554 234689999999999999999999999999999999854221100 0 00
Q ss_pred CCCCchhhhhccCcC-----------CccCCCCCChhhHHHHh----hcCc----ccccCCCCCcEEEEEeCCCCCCCcH
Q 003363 716 DIPDWCYVESYGSKG-----------KDSFTESPSVEDLTRFH----SKSP----ISHISKVKTPTIFLLGAQDLRVPVS 776 (826)
Q Consensus 716 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~----~~sp----~~~~~~i~~PvLii~G~~D~~vp~~ 776 (826)
..........+.... ...+...........+. .... ...+.++++|+|+++|++|..+| .
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-~ 243 (286)
T 2qmq_A 165 SIPDMILGHLFSQEELSGNSELIQKYRGIIQHAPNLENIELYWNSYNNRRDLNFERGGETTLKCPVMLVVGDQAPHED-A 243 (286)
T ss_dssp CHHHHHHHHHSCHHHHHTTCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCCCCCSEETTEECCCSCEEEEEETTSTTHH-H
T ss_pred cchHHHHHHHhcCCCCCcchHHHHHHHHHHHhcCCcchHHHHHHHHhhhhhhhhhhchhccCCCCEEEEecCCCcccc-H
Confidence 000000000000000 00000000000001111 1011 13456889999999999999987 2
Q ss_pred HHHHHHHHHHhCCC-CEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 777 NGLQYARALREKGV-ETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 777 ~~~~~~~~l~~~g~-~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
. .+.+.+... .+++++++++||.+.... ..++.+.+.+||+
T Consensus 244 ~----~~~~~~~~~~~~~~~~~~~~gH~~~~e~-p~~~~~~i~~fl~ 285 (286)
T 2qmq_A 244 V----VECNSKLDPTQTSFLKMADSGGQPQLTQ-PGKLTEAFKYFLQ 285 (286)
T ss_dssp H----HHHHHHSCGGGEEEEEETTCTTCHHHHC-HHHHHHHHHHHHC
T ss_pred H----HHHHHHhcCCCceEEEeCCCCCcccccC-hHHHHHHHHHHhc
Confidence 2 233333333 589999999999875433 4577888888875
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.7e-14 Score=167.78 Aligned_cols=267 Identities=9% Similarity=0.015 Sum_probs=171.7
Q ss_pred EEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCC--
Q 003363 99 WTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN-- 176 (826)
Q Consensus 99 ~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~-- 176 (826)
.-...+||||++++|+.+... .....|+++++.+ ++..+.+... .....++|| ||+.|+|++..+.
T Consensus 131 l~~~~~SpDg~~lAy~~~~~G----~~~~~i~v~dl~t--g~~~~~~~~~-----~k~~~~~Ws-Dg~~l~y~~~~~~~~ 198 (693)
T 3iuj_A 131 LDQLSFSRDGRILAYSLSLAG----SDWREIHLMDVES--KQPLETPLKD-----VKFSGISWL-GNEGFFYSSYDKPDG 198 (693)
T ss_dssp EEEEEECTTSSEEEEEEECSS----CCEEEEEEEETTT--CSEEEEEEEE-----EESCCCEEE-TTTEEEEEESSCCC-
T ss_pred EEEEEECCCCCEEEEEEecCC----CceEEEEEEECCC--CCCCccccCC-----ceeccEEEe-CCCEEEEEEecCccc
Confidence 334467999999999876532 3457888888743 3333332221 114678999 9999999987642
Q ss_pred -------CCCeEEEEecC-Cc--eeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCC
Q 003363 177 -------ESPIQFELWSQ-SQ--LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSS 246 (826)
Q Consensus 177 -------~~~~~~~i~~~-~~--~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~ 246 (826)
...+++....+ +. .+.+....... +.++.++.|||||++|++.+....
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~------~~~~~~~~~SpDg~~l~~~~~~~~---------------- 256 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQ------HHRYVGATVTEDDRFLLISAANST---------------- 256 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGG------CCSEEEEEECTTSCEEEEEEESSS----------------
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCC------CeEEEEEEEcCCCCEEEEEEccCC----------------
Confidence 23345544422 22 23333322101 112358899999999999865431
Q ss_pred CccCCCCCCcceeecCCCccCCCccCceEEEEEccCC--ceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCccee
Q 003363 247 DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG--EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK 324 (826)
Q Consensus 247 ~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g--~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~ 324 (826)
....||++|++++ +.+.+. ........ .|++||+. |+|.++...
T Consensus 257 ------------------------~~~~i~~~d~~~~~~~~~~l~--~~~~~~~~-~~~~~g~~----l~~~t~~~~--- 302 (693)
T 3iuj_A 257 ------------------------SGNRLYVKDLSQENAPLLTVQ--GDLDADVS-LVDNKGST----LYLLTNRDA--- 302 (693)
T ss_dssp ------------------------SCCEEEEEETTSTTCCCEEEE--CSSSSCEE-EEEEETTE----EEEEECTTC---
T ss_pred ------------------------CCcEEEEEECCCCCCceEEEe--CCCCceEE-EEeccCCE----EEEEECCCC---
Confidence 1258999999876 567773 33222223 38999999 999986432
Q ss_pred eeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc---eecCCCCccccCceecCCCCEEEEEeccCCCCCCCCc
Q 003363 325 LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401 (826)
Q Consensus 325 ~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~ 401 (826)
....|+.+|+ +++.. +.|+.+..... .||++|++|++...++
T Consensus 303 --------~~~~l~~~d~-----------------~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~-------- 347 (693)
T 3iuj_A 303 --------PNRRLVTVDA-----------------ANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVD-------- 347 (693)
T ss_dssp --------TTCEEEEEET-----------------TSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEET--------
T ss_pred --------CCCEEEEEeC-----------------CCCCccccEEEecCCCCEE--EEEEECCEEEEEEEEC--------
Confidence 2347999998 44443 66766655443 9999999999988774
Q ss_pred ccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEe-CCeEEEEEEECCCCcE
Q 003363 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGEL 480 (826)
Q Consensus 402 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~-~~~~~l~~vdl~tg~~ 480 (826)
+..+|+++|++++..+.+.... .. .+..+.+++|++.|++.... .....+|.+|+.+++.
T Consensus 348 g~~~l~~~d~~g~~~~~l~~p~-----------~~--------~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 348 ATARVEQFDYEGKRVREVALPG-----------LG--------SVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp TEEEEEEECTTSCEEEEECCSS-----------SS--------EEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred CeeEEEEEECCCCeeEEeecCC-----------Cc--------eEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 3468999998864432221110 00 12245678899988887654 2456899999999998
Q ss_pred EEecCCC
Q 003363 481 LRITPAE 487 (826)
Q Consensus 481 ~~lt~~~ 487 (826)
+.+....
T Consensus 409 ~~l~~~~ 415 (693)
T 3iuj_A 409 SLYRASA 415 (693)
T ss_dssp EEEECCC
T ss_pred EEEEeCC
Confidence 8887543
|
| >1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region; esterase, lipase, serine hydrolase, structural genomics; HET: LI5; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-15 Score=152.34 Aligned_cols=206 Identities=17% Similarity=0.116 Sum_probs=127.1
Q ss_pred CCCcEEEEEcCCCCCCCCccch----HHHHHHHHCCcEEEEECCCCCCC------------------CchhhhhcCCCCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYS----KSLAFLSSVGYSLLIVNYRGSLG------------------FGEEALQSLPGKV 647 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~----~~~~~la~~G~~Vl~~d~rG~~g------------------~G~~~~~~~~~~~ 647 (826)
.+.|.||++||.+.+ ...|. .....|.++||.|+.+|+++... +|... .-....
T Consensus 3 ~~~~~vl~lHG~g~~--~~~~~~~~~~l~~~l~~~g~~v~~~d~p~~~~~~~~~~~~~~~~~~~~~g~g~~~--~w~~~~ 78 (243)
T 1ycd_A 3 VQIPKLLFLHGFLQN--GKVFSEKSSGIRKLLKKANVQCDYIDAPVLLEKKDLPFEMDDEKWQATLDADVNR--AWFYHS 78 (243)
T ss_dssp CCCCEEEEECCTTCC--HHHHHHHTHHHHHHHHHTTCEEEEECCSEECCGGGCSSCCCHHHHHHHHHTTCCE--ESSCCC
T ss_pred CcCceEEEeCCCCcc--HHHHHHHHHHHHHHHhhcceEEEEcCCCeeCCCcCcccccccccccccCCCCCCc--ccccCC
Confidence 356899999996654 33333 35566777899999999993211 11100 000001
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCC------CceeEEEecCCccchhhhccCCCCCCch
Q 003363 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP------DKFVAAAARNPLCNLALMVGTTDIPDWC 721 (826)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p------~~~~a~v~~~p~~~~~~~~~~~~~~~~~ 721 (826)
......|+.++++++.+....+..+++|+|||+||.+++.++.+++ ..++++++.++....... ....
T Consensus 79 ~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~v~~~g~~~~~~~---~~~~--- 152 (243)
T 1ycd_A 79 EISHELDISEGLKSVVDHIKANGPYDGIVGLSQGAALSSIITNKISELVPDHPQFKVSVVISGYSFTEPD---PEHP--- 152 (243)
T ss_dssp SSGGGCCCHHHHHHHHHHHHHHCCCSEEEEETHHHHHHHHHHHHHHHHSTTCCCCSEEEEESCCCCEEEC---TTST---
T ss_pred CCcchhhHHHHHHHHHHHHHhcCCeeEEEEeChHHHHHHHHHHHHhhcccCCCCceEEEEecCCCCCCcc---cccc---
Confidence 1122455666666665542223468999999999999999988653 246777777665432110 0000
Q ss_pred hhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCC---CCEEEEEeC
Q 003363 722 YVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG---VETKVIVFP 798 (826)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g---~~~~~~~~p 798 (826)
+. ..+ . + .+ ......+.++++|+|++||++|..||++++.++++.++..+ .....++++
T Consensus 153 -----~~---~~~----~-~---~~--~~~~~~~~~~~~P~l~i~G~~D~~vp~~~~~~~~~~~~~~~g~~~~~~~~~~~ 214 (243)
T 1ycd_A 153 -----GE---LRI----T-E---KF--RDSFAVKPDMKTKMIFIYGASDQAVPSVRSKYLYDIYLKAQNGNKEKVLAYEH 214 (243)
T ss_dssp -----TC---EEE----C-G---GG--TTTTCCCTTCCCEEEEEEETTCSSSCHHHHHHHHHHHHHHTTTCTTTEEEEEE
T ss_pred -----cc---ccc----c-h---hH--HHhccCcccCCCCEEEEEeCCCCccCHHHHHHHHHHhhhhccccccccEEEec
Confidence 00 000 0 0 00 01122356688999999999999999999999999998641 112345667
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 799 NDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 799 ~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
++||.+... ..+...+.+||+++++
T Consensus 215 ~~gH~~~~~---~~~~~~i~~fl~~~~~ 239 (243)
T 1ycd_A 215 PGGHMVPNK---KDIIRPIVEQITSSLQ 239 (243)
T ss_dssp SSSSSCCCC---HHHHHHHHHHHHHHHC
T ss_pred CCCCcCCch---HHHHHHHHHHHHHhhh
Confidence 789987543 2588999999998764
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-15 Score=166.32 Aligned_cols=213 Identities=11% Similarity=0.030 Sum_probs=141.4
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcE----EEEECCCCCCCCchhhhhcCCCCC
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYS----LLIVNYRGSLGFGEEALQSLPGKV 647 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~----Vl~~d~rG~~g~G~~~~~~~~~~~ 647 (826)
.|.....++|.|++++ .+++|+|+++||+.+... ..+...++.|+++|+. |+.+|+++..+ +.. ...
T Consensus 178 ~g~~~~~~vy~P~~~~-~~~~PvlvllHG~~~~~~-~~~~~~~~~l~~~g~~~p~iVV~~d~~~~~~--r~~--~~~--- 248 (403)
T 3c8d_A 178 LKNSRRVWIFTTGDVT-AEERPLAVLLDGEFWAQS-MPVWPVLTSLTHRQQLPPAVYVLIDAIDTTH--RAH--ELP--- 248 (403)
T ss_dssp TTEEEEEEEEEC------CCCCEEEESSHHHHHHT-SCCHHHHHHHHHTTSSCSCEEEEECCCSHHH--HHH--HSS---
T ss_pred cCCcEEEEEEeCCCCC-CCCCCEEEEeCCHHHhhc-CcHHHHHHHHHHcCCCCCeEEEEECCCCCcc--ccc--cCC---
Confidence 4567888999998753 578999999999643211 1234567788888875 99999986321 111 111
Q ss_pred CcchHHHH--HHHHHHHHHcCC--CCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhh
Q 003363 648 GSQDVNDV--LTAIDHVIDMGL--ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYV 723 (826)
Q Consensus 648 ~~~~~~D~--~~~i~~l~~~~~--~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~ 723 (826)
......+. .+++.++.++.. .|+++++|+|+||||++++.++.++|++|+++++.+|.+.+....
T Consensus 249 ~~~~~~~~l~~el~~~i~~~~~~~~d~~~~~l~G~S~GG~~al~~a~~~p~~f~~~~~~sg~~~~~~~~----------- 317 (403)
T 3c8d_A 249 CNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRG----------- 317 (403)
T ss_dssp SCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESCCTTTTCTT-----------
T ss_pred ChHHHHHHHHHHHHHHHHHHCCCCCCCCceEEEEECHHHHHHHHHHHhCchhhcEEEEeccccccCCCC-----------
Confidence 11123332 345667666532 578999999999999999999999999999999999976432110
Q ss_pred hhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCC
Q 003363 724 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803 (826)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~ 803 (826)
.. +.......+.. . ......+|++|+||+.|..+ ..++++++++|+++|+++++.++|| +|.
T Consensus 318 ----~~--------~~~~~~~~~~~-~---~~~~~~~~i~l~~G~~D~~~-~~~~~~l~~~L~~~G~~v~~~~~~G-gH~ 379 (403)
T 3c8d_A 318 ----GQ--------QEGVLLEKLKA-G---EVSAEGLRIVLEAGIREPMI-MRANQALYAQLHPIKESIFWRQVDG-GHD 379 (403)
T ss_dssp ----SS--------SCCHHHHHHHT-T---SSCCCSCEEEEEEESSCHHH-HHHHHHHHHHTGGGTTSEEEEEESC-CSC
T ss_pred ----CC--------cHHHHHHHHHh-c---cccCCCceEEEEeeCCCchh-HHHHHHHHHHHHhCCCCEEEEEeCC-CCC
Confidence 00 00011111111 1 12345688999999998653 6889999999999999999999999 597
Q ss_pred CCCCCCHHHHHHHHHHHHHHHc
Q 003363 804 IERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 804 ~~~~~~~~~~~~~i~~w~~~~l 825 (826)
+. .....+..++.||.+.+
T Consensus 380 ~~---~w~~~l~~~l~~l~~~~ 398 (403)
T 3c8d_A 380 AL---CWRGGLMQGLIDLWQPL 398 (403)
T ss_dssp HH---HHHHHHHHHHHHHHGGG
T ss_pred HH---HHHHHHHHHHHHHhccc
Confidence 42 12345667788876653
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-13 Score=144.52 Aligned_cols=243 Identities=12% Similarity=0.136 Sum_probs=150.9
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCce-eEEEecCCCccccccCCCcccc-eeecCCCCeEEEEeecCCCCCC
Q 003363 158 AVVPSPSGSKLLVVRNPENESPIQFELW-SQSQL-EKEFHVPQTVHGSVYADGWFEG-ISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 158 ~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~-~~~~~~~~~~~g~v~~~~~~~~-~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
.++|||||++|++..... ..++.++ ..++. .+........ .. +.|||||++|+ ++....
T Consensus 44 ~~~~s~dg~~l~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~----------~~~~~~s~dg~~l~-~~~~~~---- 105 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFC---QTLVQIETQLEPPKVVAIQEGQSS----------MADVDITPDDQFAV-TVTGLN---- 105 (331)
T ss_dssp EEEECSSSCEEEEEESTT---CEEEEEECSSSSCEEEEEEECSSC----------CCCEEECTTSSEEE-ECCCSS----
T ss_pred eEEEcCCCCEEEEEeCCC---CeEEEEECCCCceeEEecccCCCC----------ccceEECCCCCEEE-EecCCC----
Confidence 889999999887776533 2566666 44554 3333333333 34 99999999998 432210
Q ss_pred CccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003363 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (826)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lv 314 (826)
....|++||+++++.... .+.......++|+|||+. |+
T Consensus 106 ------------------------------------~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~spdg~~----l~ 143 (331)
T 3u4y_A 106 ------------------------------------HPFNMQSYSFLKNKFIST--IPIPYDAVGIAISPNGNG----LI 143 (331)
T ss_dssp ------------------------------------SSCEEEEEETTTTEEEEE--EECCTTEEEEEECTTSSC----EE
T ss_pred ------------------------------------CcccEEEEECCCCCeEEE--EECCCCccceEECCCCCE----EE
Confidence 124899999999887665 334445678999999998 87
Q ss_pred EEeecCcceeeeeeeeccCCCc-eEEEEcccccchhhhhhhhcCCCCCCcc----eecCCCCccccCceecCCCCEEEEE
Q 003363 315 FVGWSSETRKLGIKYCYNRPCA-LYAVRVSLYKSEASELELKESSSEDLPV----VNLTESISSAFFPRFSPDGKFLVFL 389 (826)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~-l~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~Lt~~~~~~~~p~~SpDG~~l~f~ 389 (826)
+.... ... |++++++ ..+.. ..............|||||++|++.
T Consensus 144 ~~~~~--------------~~~~i~~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 193 (331)
T 3u4y_A 144 LIDRS--------------SANTVRRFKID----------------ADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVA 193 (331)
T ss_dssp EEEET--------------TTTEEEEEEEC----------------TTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEE
T ss_pred EEecC--------------CCceEEEEEEC----------------CCCcEeecCCccccCCCCccceEECCCCCEEEEE
Confidence 76522 124 6666662 12221 1222223346778999999988766
Q ss_pred eccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEE
Q 003363 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (826)
Q Consensus 390 s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (826)
.... ..|++||+.+++... .+..+... .....+.|+|||++|+++. .+...
T Consensus 194 ~~~~----------~~v~v~d~~~~~~~~-------~~~~~~~~----------~~~~~~~~spdg~~l~v~~--~~~~~ 244 (331)
T 3u4y_A 194 NLIG----------NSIGILETQNPENIT-------LLNAVGTN----------NLPGTIVVSRDGSTVYVLT--ESTVD 244 (331)
T ss_dssp ETTT----------TEEEEEECSSTTSCE-------EEEEEECS----------SCCCCEEECTTSSEEEEEC--SSEEE
T ss_pred eCCC----------CeEEEEECCCCcccc-------eeeeccCC----------CCCceEEECCCCCEEEEEE--cCCCE
Confidence 5432 569999988755411 01111110 1345778999999887653 34566
Q ss_pred EEEEECCCCcEEEecC---C----CC---CeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003363 470 IISVNVSSGELLRITP---A----ES---NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (826)
Q Consensus 470 l~~vdl~tg~~~~lt~---~----~~---~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 522 (826)
|+.+|+.+++++.+.. . .. ......|++|++.+++..... ..+.+.++..
T Consensus 245 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~---~~v~v~d~~~ 304 (331)
T 3u4y_A 245 VFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS---RELKVFTISG 304 (331)
T ss_dssp EEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT---TEEEEEETTS
T ss_pred EEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCC---CcEEEEEecC
Confidence 8889999998854421 1 11 112247899999887766543 2477777643
|
| >1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI, protei structure initiative; HET: MSE 3OH; 1.70A {Escherichia coli} SCOP: c.69.1.26 | Back alignment and structure |
|---|
Probab=99.61 E-value=8.2e-16 Score=158.30 Aligned_cols=207 Identities=17% Similarity=0.159 Sum_probs=126.3
Q ss_pred EEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcE
Q 003363 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 673 (826)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv 673 (826)
.||++||.+.. ...|...+..|+ .+|.|+++|+||. |.+... ....++++. +.+.+. ++ +++
T Consensus 15 ~vvllHG~~~~--~~~w~~~~~~L~-~~~~vi~~Dl~G~---G~S~~~------~~~~~~~~~---~~l~~~--l~-~~~ 76 (258)
T 1m33_A 15 HLVLLHGWGLN--AEVWRCIDEELS-SHFTLHLVDLPGF---GRSRGF------GALSLADMA---EAVLQQ--AP-DKA 76 (258)
T ss_dssp EEEEECCTTCC--GGGGGGTHHHHH-TTSEEEEECCTTS---TTCCSC------CCCCHHHHH---HHHHTT--SC-SSE
T ss_pred eEEEECCCCCC--hHHHHHHHHHhh-cCcEEEEeeCCCC---CCCCCC------CCcCHHHHH---HHHHHH--hC-CCe
Confidence 79999997654 456777777776 5899999999994 444211 123344433 444443 44 789
Q ss_pred EEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCc---hhhhhcc----C---cC--CccCC------
Q 003363 674 TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDW---CYVESYG----S---KG--KDSFT------ 735 (826)
Q Consensus 674 ~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~---~~~~~~~----~---~~--~~~~~------ 735 (826)
.|+||||||.+++.+|.++|++++++|+.++................ .+..... . .. ...+.
T Consensus 77 ~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 1m33_A 77 IWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGTETARQ 156 (258)
T ss_dssp EEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSTTHHH
T ss_pred EEEEECHHHHHHHHHHHHhhHhhceEEEECCCCCccccccccCCCHHHHHHHHHHHhccHHHHHHHHHHHHhcCCccchh
Confidence 99999999999999999999999999998764211100000000000 0000000 0 00 00000
Q ss_pred ------------CCCChhhH----HHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 003363 736 ------------ESPSVEDL----TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 799 (826)
Q Consensus 736 ------------~~~~~~~~----~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~ 799 (826)
..+..... ..+...+....+.++++|+|+++|++|..+|+..++.+.+.+. ..+++++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~~ 232 (258)
T 1m33_A 157 DARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWP----HSESYIFAK 232 (258)
T ss_dssp HHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGGCCSCEEEEEETTCSSSCGGGCC-CTTTCT----TCEEEEETT
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHhCCHHHHHhhCCCCEEEEeecCCCCCCHHHHHHHHHhCc----cceEEEeCC
Confidence 00000000 0111222334567889999999999999999887665554443 468999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 800 DVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 800 ~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+||.....+ ..++...|.+|+.+
T Consensus 233 ~gH~~~~e~-p~~~~~~i~~fl~~ 255 (258)
T 1m33_A 233 AAHAPFISH-PAEFCHLLVALKQR 255 (258)
T ss_dssp CCSCHHHHS-HHHHHHHHHHHHTT
T ss_pred CCCCccccC-HHHHHHHHHHHHHh
Confidence 999865443 45788889999865
|
| >2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase fold, structural genomics, structural G of pathogenic protozoa consortium; 2.20A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.9e-15 Score=158.77 Aligned_cols=207 Identities=14% Similarity=0.136 Sum_probs=125.3
Q ss_pred CCcEEEEEcCCCCCCC-CccchHHHHHHHHCCcEEEEECC----CCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHc
Q 003363 591 CDPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNY----RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM 665 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~-~~~~~~~~~~la~~G~~Vl~~d~----rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 665 (826)
..|+||++||.+.... ...|...+..| +.||.|+++|+ || +|.+.. ....+|+.++++++.+.
T Consensus 37 ~~~~vvllHG~~~~~~~~~~~~~l~~~L-~~g~~Vi~~Dl~~D~~G---~G~S~~--------~~~~~d~~~~~~~l~~~ 104 (335)
T 2q0x_A 37 ARRCVLWVGGQTESLLSFDYFTNLAEEL-QGDWAFVQVEVPSGKIG---SGPQDH--------AHDAEDVDDLIGILLRD 104 (335)
T ss_dssp SSSEEEEECCTTCCTTCSTTHHHHHHHH-TTTCEEEEECCGGGBTT---SCSCCH--------HHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCccccchhHHHHHHHHH-HCCcEEEEEeccCCCCC---CCCccc--------cCcHHHHHHHHHHHHHH
Confidence 4578999999654322 22345667777 78999999965 66 544321 12467888888888875
Q ss_pred CCCCCCcEEEEEecchHHHHHHHHH--hCCCceeEEEecCCccchhhhccCCCCCC--ch----hhhhc---c--CcC--
Q 003363 666 GLANPSKVTVVGGSHGGFLTTHLIG--QAPDKFVAAAARNPLCNLALMVGTTDIPD--WC----YVESY---G--SKG-- 730 (826)
Q Consensus 666 ~~~d~~rv~l~G~S~GG~~a~~~a~--~~p~~~~a~v~~~p~~~~~~~~~~~~~~~--~~----~~~~~---~--~~~-- 730 (826)
++.+++.|+||||||.+++.++. .+|++++++|+.+|..+... ..... +. ..... + ...
T Consensus 105 --l~~~~~~LvGhSmGG~iAl~~A~~~~~p~rV~~lVL~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (335)
T 2q0x_A 105 --HCMNEVALFATSTGTQLVFELLENSAHKSSITRVILHGVVCDPEN----PLFTPEGCAARKEHVEKLMAEGRGEDSLA 178 (335)
T ss_dssp --SCCCCEEEEEEGGGHHHHHHHHHHCTTGGGEEEEEEEEECCCTTS----TTTSHHHHHHHHHHHHHHHHHTCTTCGGG
T ss_pred --cCCCcEEEEEECHhHHHHHHHHHhccchhceeEEEEECCcccchh----cccCHHHHHHHHHHHHHHhhccCcccccc
Confidence 45689999999999999999998 57999999999887643210 00000 00 00000 0 000
Q ss_pred CccCCCCCC-hhh-------------HHHHh---hcCcccccCCCCCcEEEEEeCCCCCCCcHH-HHHHHHHHHhCCCCE
Q 003363 731 KDSFTESPS-VED-------------LTRFH---SKSPISHISKVKTPTIFLLGAQDLRVPVSN-GLQYARALREKGVET 792 (826)
Q Consensus 731 ~~~~~~~~~-~~~-------------~~~~~---~~sp~~~~~~i~~PvLii~G~~D~~vp~~~-~~~~~~~l~~~g~~~ 792 (826)
...+...+. ... ..... ..+....+.++++|+|+++|++|..+|+.. ...+.+.+.+.-...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLvi~G~~D~~vp~~~~~~~~~~~l~~~~~~~ 258 (335)
T 2q0x_A 179 MLKHYDIPITPARLAGGGFPTLQEAVWNPCIRKEFDVLRRSVGVIKVPLLLMLAHNVQYKPSDEEVGTVLEGVRDHTGCN 258 (335)
T ss_dssp GTTTCSSCCCHHHHHTCSCSSHHHHTHHHHHTTCHHHHHHTGGGCCSCEEEEEECCTTCCCCHHHHHHHHHHHHHHSSSS
T ss_pred chhhccCccCHHHHhhccCCCchhhhhhhhhhhhhhHHHHHHhcCCCCeEEEEecCCCCCChhhhHHHHHHHHHHhcCcc
Confidence 000000000 000 00000 011223567899999999999999999864 223334443322223
Q ss_pred E--------E-----EEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 793 K--------V-----IVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 793 ~--------~-----~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
+ + +++|++|| +....+.+||++.
T Consensus 259 ~~~~~~~~~~~~~~~~~i~~agH---------e~~~~i~~FL~~~ 294 (335)
T 2q0x_A 259 RVTVSYFNDTCDELRRVLKAAES---------EHVAAILQFLADE 294 (335)
T ss_dssp CEEEEECCCEECTTSCEEECCHH---------HHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhcccCCCCC---------HHHHHHHHHHHhh
Confidence 3 5 78999999 3478899999764
|
| >1r3d_A Conserved hypothetical protein VC1974; structural genomics, hydrolase, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP: c.69.1.35 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-15 Score=154.64 Aligned_cols=210 Identities=15% Similarity=0.177 Sum_probs=123.9
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.|.||++||.+.. ...|...+..|++.||.|+++|+||.|. +... ....++++.+.+..+++.-.++..
T Consensus 16 ~~~vvllHG~~~~--~~~w~~~~~~L~~~~~~vi~~Dl~GhG~---S~~~------~~~~~~~~a~~l~~~l~~l~~~~~ 84 (264)
T 1r3d_A 16 TPLVVLVHGLLGS--GADWQPVLSHLARTQCAALTLDLPGHGT---NPER------HCDNFAEAVEMIEQTVQAHVTSEV 84 (264)
T ss_dssp BCEEEEECCTTCC--GGGGHHHHHHHTTSSCEEEEECCTTCSS---CC-------------CHHHHHHHHHHHTTCCTTS
T ss_pred CCcEEEEcCCCCC--HHHHHHHHHHhcccCceEEEecCCCCCC---CCCC------CccCHHHHHHHHHHHHHHhCcCCC
Confidence 4889999997655 5578888888876899999999999543 3211 012345555555555555323322
Q ss_pred cEEEEEecchHHHHHH---HHHhCCCceeEEEecCCccchhhhcc----CCCCCCch----------hhhhccCcCCccC
Q 003363 672 KVTVVGGSHGGFLTTH---LIGQAPDKFVAAAARNPLCNLALMVG----TTDIPDWC----------YVESYGSKGKDSF 734 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~---~a~~~p~~~~a~v~~~p~~~~~~~~~----~~~~~~~~----------~~~~~~~~~~~~~ 734 (826)
++.|+||||||.+++. ++.++|++++++|+.++......... ......|. ....+.. ...+
T Consensus 85 p~~lvGhSmGG~va~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 162 (264)
T 1r3d_A 85 PVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHFGLQENEEKAARWQHDQQWAQRFSQQPIEHVLSDWYQ--QAVF 162 (264)
T ss_dssp EEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCCCCCCSHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHTT--SGGG
T ss_pred ceEEEEECHhHHHHHHHHHHHhhCccccceEEEecCCCCCCChhhhhhhhcccHHHHHHhccccHHHHHHHHhh--hhhh
Confidence 4999999999999999 88889999999999876432110000 00000000 0000000 0000
Q ss_pred CCCC--------------ChhhHHHHh-h------cCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEE
Q 003363 735 TESP--------------SVEDLTRFH-S------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 793 (826)
Q Consensus 735 ~~~~--------------~~~~~~~~~-~------~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 793 (826)
.... .......+. . ......+.++++|+|+++|++|..+ ..+.+.+. ++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~-----~~~~~~~~-----~~ 232 (264)
T 1r3d_A 163 SSLNHEQRQTLIAQRSANLGSSVAHMLLATSLAKQPYLLPALQALKLPIHYVCGEQDSKF-----QQLAESSG-----LS 232 (264)
T ss_dssp TTCCHHHHHHHHHHHTTSCHHHHHHHHHHTCGGGCCCCHHHHHTCSSCEEEEEETTCHHH-----HHHHHHHC-----SE
T ss_pred hccCHHHHHHHHHHHhhcchHHHHHHHHhhhhccCccHHHHHHhcCCCEEEEEECCCchH-----HHHHHHhC-----Cc
Confidence 0000 000000111 0 1122345678999999999999743 22333332 56
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 794 VIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 794 ~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
+++++++||...... ..++.+.+.+|+.++.
T Consensus 233 ~~~i~~~gH~~~~e~-p~~~~~~i~~fl~~~~ 263 (264)
T 1r3d_A 233 YSQVAQAGHNVHHEQ-PQAFAKIVQAMIHSII 263 (264)
T ss_dssp EEEETTCCSCHHHHC-HHHHHHHHHHHHHHHC
T ss_pred EEEcCCCCCchhhcC-HHHHHHHHHHHHHHhc
Confidence 889999999875443 4478899999998765
|
| >1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase, glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.61 E-value=4e-15 Score=157.03 Aligned_cols=216 Identities=12% Similarity=0.055 Sum_probs=132.6
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHHC--CcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcC
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 666 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~--G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 666 (826)
.+..|.||++||.+.. ...|...+..|+++ ||.|+++|+|| +|.+... ....++++.+.+..+++..
T Consensus 33 ~~~~~~vvllHG~~~~--~~~~~~~~~~L~~~~~g~~vi~~D~~G---~G~s~~~------~~~~~~~~~~~l~~~~~~~ 101 (302)
T 1pja_A 33 RASYKPVIVVHGLFDS--SYSFRHLLEYINETHPGTVVTVLDLFD---GRESLRP------LWEQVQGFREAVVPIMAKA 101 (302)
T ss_dssp --CCCCEEEECCTTCC--GGGGHHHHHHHHHHSTTCCEEECCSSC---SGGGGSC------HHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCeEEEECCCCCC--hhHHHHHHHHHHhcCCCcEEEEeccCC---Cccchhh------HHHHHHHHHHHHHHHhhcC
Confidence 4456789999997655 45788889999988 99999999999 4444311 1135677777777777663
Q ss_pred CCCCCcEEEEEecchHHHHHHHHHhCCC-ceeEEEecCCccchhhhc------cCCCCCCchhhh-hccC----cCCccC
Q 003363 667 LANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPLCNLALMV------GTTDIPDWCYVE-SYGS----KGKDSF 734 (826)
Q Consensus 667 ~~d~~rv~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~p~~~~~~~~------~~~~~~~~~~~~-~~~~----~~~~~~ 734 (826)
.+++.|+|||+||.+++.++.++|+ +++++|+.++........ ............ .+.. .....+
T Consensus 102 ---~~~~~lvGhS~Gg~ia~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (302)
T 1pja_A 102 ---PQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQMGQYGDTDYLKWLFPTSMRSNLYRICYSPWGQEFSICNY 178 (302)
T ss_dssp ---TTCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESCCTTCBCSCCHHHHHHCTTCCHHHHHHHHTSTTGGGSTGGGG
T ss_pred ---CCcEEEEEECHHHHHHHHHHHhcCccccCEEEEECCCcccccccchhhhhHHHHHHHHHHhhccchHHHHHhhhhhc
Confidence 4789999999999999999999999 799999988754321000 000000000000 0000 000001
Q ss_pred CCCCC-hhhH-------HHHhhcC-------cccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHH---------------
Q 003363 735 TESPS-VEDL-------TRFHSKS-------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARA--------------- 784 (826)
Q Consensus 735 ~~~~~-~~~~-------~~~~~~s-------p~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~--------------- 784 (826)
...+. .+.. ..+.... ....+.+++ |+|+++|++|..+|++.+..+.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~-P~lii~G~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (302)
T 1pja_A 179 WHDPHHDDLYLNASSFLALINGERDHPNATVWRKNFLRVG-HLVLIGGPDDGVITPWQSSFFGFYDANETVLEMEEQLVY 257 (302)
T ss_dssp BCCTTCHHHHHHHCSSHHHHTTSSCCTTHHHHHHHHTTCS-EEEEEECTTCSSSSSGGGGGTCEECTTCCEECGGGSHHH
T ss_pred ccChhhhhhhhccchHHHHhhcCCccccchhHHHHHhccC-cEEEEEeCCCCccchhHhhHhhhcCCcccccchhhhhhh
Confidence 11111 1110 0000000 123467788 999999999999999887666322
Q ss_pred ---------HHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 003363 785 ---------LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 785 ---------l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~ 821 (826)
+... .+++++++|++||...... ...+.+.+.+|+
T Consensus 258 ~~~~~~~~~l~~~-~~~~~~~i~~~gH~~~~e~-p~~~~~~i~~fl 301 (302)
T 1pja_A 258 LRDSFGLKTLLAR-GAIVRCPMAGISHTAWHSN-RTLYETCIEPWL 301 (302)
T ss_dssp HTTTTSHHHHHHT-TCEEEEECSSCCTTTTTSC-HHHHHHHTGGGC
T ss_pred hhhhhchhhHhhc-CCeEEEEecCccccccccC-HHHHHHHHHHhc
Confidence 1111 2389999999999876443 446666666664
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3e-15 Score=155.72 Aligned_cols=211 Identities=17% Similarity=0.128 Sum_probs=130.5
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHH-CCcEEEEECCCCCCCCc-----hhhhhcC---
Q 003363 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFG-----EEALQSL--- 643 (826)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~-~G~~Vl~~d~rG~~g~G-----~~~~~~~--- 643 (826)
+.++..++|.|+++++.+++|+|+++||+.... .......+.|++ .+..|+.+++++...+. .++....
T Consensus 24 ~~~~~~~vylP~~y~~~~~yPvly~l~G~~~~~--~~~~~~~~~l~~~~~~ivV~v~~~~~~~~~~~~R~~d~~~~~~~~ 101 (278)
T 2gzs_A 24 TRHYRVWTAVPNTTAPASGYPILYMLDGNAVMD--RLDDELLKQLSEKTPPVIVAVGYQTNLPFDLNSRAYDYTPAAESR 101 (278)
T ss_dssp SCEEEEEEEEESSCCCTTCEEEEEESSHHHHHH--HCCHHHHHHHTTSCCCEEEEEEESSSSSCCHHHHHHHTCCGGGGT
T ss_pred CceEEEEEECCCCCCCCCCCCEEEEeeChhHHH--HHHHHHHHHhccCCCeEEEEEcCCCCCcCcccccccccCCCCccc
Confidence 578899999999987778899887777743210 111223445554 67888889987532111 1111000
Q ss_pred -C-------CCCCcchHHHHHHH-----HHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh
Q 003363 644 -P-------GKVGSQDVNDVLTA-----IDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710 (826)
Q Consensus 644 -~-------~~~~~~~~~D~~~~-----i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~ 710 (826)
+ .... ....++.+. +.++.++..+|++|++|+|+||||++++.++.+ |++|+++++.+|...+..
T Consensus 102 ~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~i~~~~~~~~~r~~i~G~S~GG~~a~~~~~~-p~~f~~~~~~s~~~~~~~ 179 (278)
T 2gzs_A 102 KTDLHSGRFSRKS-GGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS-SSYFRSYYSASPSLGRGY 179 (278)
T ss_dssp TCSCC-----CCC-CCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH-CSSCSEEEEESGGGSTTH
T ss_pred cccccccCcCCCc-CCHHHHHHHHHHHHHHHHHHhccCCCCceEEEEECHHHHHHHHHHhC-ccccCeEEEeCcchhcCc
Confidence 0 0000 112232222 233344455788899999999999999999999 999999999998653211
Q ss_pred hccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCC--------CcHHHHHHH
Q 003363 711 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRV--------PVSNGLQYA 782 (826)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~v--------p~~~~~~~~ 782 (826)
. ..........+ . ..-..|+++.+|+.|..+ +..++++++
T Consensus 180 ~-----------------------------~~~~~~~~~~~--~-~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~ 227 (278)
T 2gzs_A 180 D-----------------------------ALLSRVTAVEP--L-QFCTKHLAIMEGSATQGDNRETHAVGVLSKIHTTL 227 (278)
T ss_dssp H-----------------------------HHHHHHHTSCT--T-TTTTCEEEEEECCC-----------CHHHHHHHHH
T ss_pred c-----------------------------hHHHHHHHhhc--c-CCCCCcEEEEecCccccccccchhhhhHHHHHHHH
Confidence 0 00000001100 0 112468999999999864 478999999
Q ss_pred HHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 783 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 783 ~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
++|+++|+++++.++||++|..... ..+...+.||.+
T Consensus 228 ~~L~~~g~~~~~~~~~g~~H~~~~~----~~~~~~l~fl~~ 264 (278)
T 2gzs_A 228 TILKDKGVNAVFWDFPNLGHGPMFN----ASFRQALLDISG 264 (278)
T ss_dssp HHHHHTTCCEEEEECTTCCHHHHHH----HHHHHHHHHHTT
T ss_pred HHHHcCCCeeEEEEcCCCCccchhH----HHHHHHHHHHhh
Confidence 9999999999999999999975321 223445667754
|
| >2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase, luciferase, oxidoreductase; 1.40A {Renilla reniformis} PDB: 2pse_A 2psj_A* 2psh_A 2psf_A | Back alignment and structure |
|---|
Probab=99.60 E-value=6.2e-15 Score=156.98 Aligned_cols=211 Identities=15% Similarity=0.193 Sum_probs=126.7
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
+.|.||++||.+.. ...|...+..|++. |.|+++|+||. |.+.. + ......++++.+.+..+++. ++.
T Consensus 42 ~~~~vvllHG~~~~--~~~w~~~~~~L~~~-~~via~Dl~Gh---G~S~~---~-~~~~~~~~~~a~dl~~ll~~--l~~ 109 (318)
T 2psd_A 42 AENAVIFLHGNATS--SYLWRHVVPHIEPV-ARCIIPDLIGM---GKSGK---S-GNGSYRLLDHYKYLTAWFEL--LNL 109 (318)
T ss_dssp TTSEEEEECCTTCC--GGGGTTTGGGTTTT-SEEEEECCTTS---TTCCC---C-TTSCCSHHHHHHHHHHHHTT--SCC
T ss_pred CCCeEEEECCCCCc--HHHHHHHHHHhhhc-CeEEEEeCCCC---CCCCC---C-CCCccCHHHHHHHHHHHHHh--cCC
Confidence 34689999997754 44676667777654 79999999994 44321 1 11223567777777777765 344
Q ss_pred -CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchh-hhccCCCCCC-c----------------hhhhhccCcCC
Q 003363 671 -SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-LMVGTTDIPD-W----------------CYVESYGSKGK 731 (826)
Q Consensus 671 -~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~-~~~~~~~~~~-~----------------~~~~~~~~~~~ 731 (826)
+++.|+||||||.+++.+|.++|++++++|+.++..... .......... + .+...+...
T Consensus 110 ~~~~~lvGhSmGg~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 187 (318)
T 2psd_A 110 PKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVIESWDEWPDIEEDIALIKSEEGEKMVLENNFFVETVLPS-- 187 (318)
T ss_dssp CSSEEEEEEEHHHHHHHHHHHHCTTSEEEEEEEEECCSCBSCCTTSCSCHHHHHHHHSTHHHHHHTTTCHHHHTHHHH--
T ss_pred CCCeEEEEEChhHHHHHHHHHhChHhhheEEEeccccCCccchhhhhhHHHHHHHHhcccchhhhhcchHHHHhhccc--
Confidence 789999999999999999999999999999876432110 0000000000 0 000000000
Q ss_pred ccCCCCCChhhHHH-----------------HhhcC----------------cccccCCC-CCcEEEEEeCCCCCCCcHH
Q 003363 732 DSFTESPSVEDLTR-----------------FHSKS----------------PISHISKV-KTPTIFLLGAQDLRVPVSN 777 (826)
Q Consensus 732 ~~~~~~~~~~~~~~-----------------~~~~s----------------p~~~~~~i-~~PvLii~G~~D~~vp~~~ 777 (826)
........+.... +.... ....+.++ ++|+|+++|++| .+++ .
T Consensus 188 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~P~Lvi~G~~D-~~~~-~ 264 (318)
T 2psd_A 188 -KIMRKLEPEEFAAYLEPFKEKGEVRRPTLSWPREIPLVKGGKPDVVQIVRNYNAYLRASDDLPKLFIESDPG-FFSN-A 264 (318)
T ss_dssp -TCSSCCCHHHHHHHHGGGCSSSGGGHHHHHHHHTCCBTTTSCHHHHHHHHHHHHHHHTCTTSCEEEEEEEEC-SSHH-H
T ss_pred -cccccCCHHHHHHHHHhhcCccccccchhcccccccccccccchhHHHHHHHHHHhccccCCCeEEEEeccc-cCcH-H
Confidence 0000000000000 00000 01124567 999999999999 8876 6
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 778 GLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 778 ~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
+..+.+.+. ..+++++ ++||..... ...++.+.|.+||.+.
T Consensus 265 ~~~~~~~~~----~~~~~~i-~~gH~~~~e-~p~~~~~~i~~fl~~~ 305 (318)
T 2psd_A 265 IVEGAKKFP----NTEFVKV-KGLHFLQED-APDEMGKYIKSFVERV 305 (318)
T ss_dssp HHHHHTTSS----SEEEEEE-EESSSGGGT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC----CcEEEEe-cCCCCCHhh-CHHHHHHHHHHHHHHh
Confidence 555555443 3678888 679976544 4568889999999865
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-13 Score=149.39 Aligned_cols=266 Identities=11% Similarity=0.135 Sum_probs=148.3
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (826)
+||||+ + |..+... ....++++++.++ ..+.+... ..........+|||||++|++....+ +.-.+|.
T Consensus 47 ~spdg~-l-~~~~~~~-----~~~~v~~~~~~~g--~~~~~~~~--~~~~~~p~~~a~spdg~~l~~~~~~~-~~v~v~~ 114 (347)
T 3hfq_A 47 LSAKDC-L-YSVDKED-----DEGGIAAWQIDGQ--TAHKLNTV--VAPGTPPAYVAVDEARQLVYSANYHK-GTAEVMK 114 (347)
T ss_dssp ECTTCE-E-EEEEEET-----TEEEEEEEEEETT--EEEEEEEE--EEESCCCSEEEEETTTTEEEEEETTT-TEEEEEE
T ss_pred EccCCe-E-EEEEecC-----CCceEEEEEecCC--cEEEeeee--ecCCCCCEEEEECCCCCEEEEEeCCC-CEEEEEE
Confidence 489998 5 4433321 2457778777432 22333221 00113467789999999998776432 3334444
Q ss_pred EecCCceeEEEecCCCccccc--cCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeec
Q 003363 184 LWSQSQLEKEFHVPQTVHGSV--YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 261 (826)
Q Consensus 184 i~~~~~~~~~~~~~~~~~g~v--~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (826)
+..++....+........+.. -.......++|||||+ |+. +..
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v-~~~--------------------------------- 159 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAV-IDL--------------------------------- 159 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEE-EET---------------------------------
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEE-EeC---------------------------------
Confidence 444445444433321111100 0001125689999999 544 332
Q ss_pred CCCccCCCccCceEEEEEcc-CCceEecc--CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceE
Q 003363 262 DWGETYAGKRQPSLFVININ-SGEVQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (826)
Q Consensus 262 d~g~~~~~~~~~~l~v~d~~-~g~~~~l~--~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~ 338 (826)
....|++|+++ +|++..+. .......+..++|+|||+. |++... ....++
T Consensus 160 ---------~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~----l~v~~~--------------~~~~v~ 212 (347)
T 3hfq_A 160 ---------GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQY----AFLAGE--------------LSSQIA 212 (347)
T ss_dssp ---------TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSE----EEEEET--------------TTTEEE
T ss_pred ---------CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCE----EEEEeC--------------CCCEEE
Confidence 22578899987 66655431 1222234567899999997 766542 122455
Q ss_pred EEEcccccchhhhhhhhcCCCCCCcceec---CCC------CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEE
Q 003363 339 AVRVSLYKSEASELELKESSSEDLPVVNL---TES------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 409 (826)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~L---t~~------~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~ 409 (826)
+++++. .+++.+.+ ... ......++|||||++|+...... ..|.+|
T Consensus 213 v~~~~~---------------~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~----------~~v~v~ 267 (347)
T 3hfq_A 213 SLKYDT---------------QTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY----------NTLAVF 267 (347)
T ss_dssp EEEEET---------------TTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT----------TEEEEE
T ss_pred EEEecC---------------CCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC----------CEEEEE
Confidence 555521 23332221 111 12356689999999886555332 468888
Q ss_pred eCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003363 410 DWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (826)
Q Consensus 410 d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt 484 (826)
+++.++... .+..+.. .+ ..+..++|+|||++|+++....+...+|.+|..+|+++++.
T Consensus 268 ~~~~~g~~~-------~~~~~~~--~~-------~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~~ 326 (347)
T 3hfq_A 268 AVTADGHLT-------LIQQIST--EG-------DFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLLQ 326 (347)
T ss_dssp EECGGGCEE-------EEEEEEC--SS-------SCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred EECCCCcEE-------EeEEEec--CC-------CCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEecc
Confidence 876432110 1111111 00 12346789999998887766667888999999999988764
|
| >3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase fold, carboxylesterase, Ser- hydrolase; 2.00A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.6e-16 Score=161.99 Aligned_cols=215 Identities=13% Similarity=0.139 Sum_probs=129.4
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.|+||++||.+.......|...+..|+ +||.|+++|+||.+ .+.. .......++++.+.+..+++.- ..+
T Consensus 41 ~p~vv~lHG~G~~~~~~~~~~~~~~L~-~~~~vi~~D~~G~G---~S~~----~~~~~~~~~~~~~~l~~~l~~~--~~~ 110 (292)
T 3l80_A 41 NPCFVFLSGAGFFSTADNFANIIDKLP-DSIGILTIDAPNSG---YSPV----SNQANVGLRDWVNAILMIFEHF--KFQ 110 (292)
T ss_dssp SSEEEEECCSSSCCHHHHTHHHHTTSC-TTSEEEEECCTTST---TSCC----CCCTTCCHHHHHHHHHHHHHHS--CCS
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHHh-hcCeEEEEcCCCCC---CCCC----CCcccccHHHHHHHHHHHHHHh--CCC
Confidence 389999997433322346667777776 69999999999944 3321 1122345777777777777763 446
Q ss_pred cEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCC-CC-Cc-hhhhhccC---------cCCccCCCCCC
Q 003363 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD-IP-DW-CYVESYGS---------KGKDSFTESPS 739 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~-~~-~~-~~~~~~~~---------~~~~~~~~~~~ 739 (826)
++.|+|||+||.+++.++.++|++++++|+.+|......+..... .. .. ........ .....+.....
T Consensus 111 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (292)
T 3l80_A 111 SYLLCVHSIGGFAALQIMNQSSKACLGFIGLEPTTVMIYRAGFSSDLYPQLALRRQKLKTAADRLNYLKDLSRSHFSSQQ 190 (292)
T ss_dssp EEEEEEETTHHHHHHHHHHHCSSEEEEEEEESCCCHHHHHHCTTSSSSHHHHHHHHTCCSHHHHHHHHHHHHHHHSCHHH
T ss_pred CeEEEEEchhHHHHHHHHHhCchheeeEEEECCCCcchhhhccccccchhHHHHHHHHhccCchhhhHhhccccccCHHH
Confidence 899999999999999999999999999999996443221111000 00 00 00000000 00000000000
Q ss_pred --------hhhHHHHhhcCc---------------ccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEE
Q 003363 740 --------VEDLTRFHSKSP---------------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 796 (826)
Q Consensus 740 --------~~~~~~~~~~sp---------------~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 796 (826)
......+....+ ...+.+ ++|+|+++|++|..++++ + .+.+.+. ..+ ++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~-~~P~lii~g~~D~~~~~~-~-~~~~~~~----~~~-~~ 262 (292)
T 3l80_A 191 FKQLWRGYDYCQRQLNDVQSLPDFKIRLALGEEDFKTGISE-KIPSIVFSESFREKEYLE-S-EYLNKHT----QTK-LI 262 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTCCSSCCCCGGGGCCCCCT-TSCEEEEECGGGHHHHHT-S-TTCCCCT----TCE-EE
T ss_pred HHHhHHHHHHHHHHHHhhhhccccchhhhhcchhhhhccCC-CCCEEEEEccCccccchH-H-HHhccCC----Cce-ee
Confidence 000011111111 123445 899999999999988777 5 5443333 356 89
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 797 FPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 797 ~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
+++++|.+... ...++.+.|.+||+++-
T Consensus 263 ~~~~gH~~~~e-~p~~~~~~i~~fl~~~~ 290 (292)
T 3l80_A 263 LCGQHHYLHWS-ETNSILEKVEQLLSNHE 290 (292)
T ss_dssp ECCSSSCHHHH-CHHHHHHHHHHHHHTCT
T ss_pred eCCCCCcchhh-CHHHHHHHHHHHHHhcc
Confidence 99999976543 34578899999998764
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3.6e-14 Score=151.48 Aligned_cols=269 Identities=10% Similarity=0.016 Sum_probs=167.7
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CC-ceeEEEecC-CCccccccCCCcccceeecCCCCeEEEEeecC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QS-QLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~-~~~~~~~~~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~ 229 (826)
..+...+|||||+.|+... . ..+.+|+ .+ ....+.... ....+. +..+.|+|||+.|+..+.+.
T Consensus 52 ~~v~~~~~~~~~~~l~~~~-d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~~l~~~~~d~ 119 (337)
T 1gxr_A 52 EVVCAVTISNPTRHVYTGG-K-----GCVKVWDISHPGNKSPVSQLDCLNRDNY------IRSCKLLPDGCTLIVGGEAS 119 (337)
T ss_dssp SCCCEEEECSSSSEEEEEC-B-----SEEEEEETTSTTCCSCSEEEECSCTTSB------EEEEEECTTSSEEEEEESSS
T ss_pred CceEEEEEecCCcEEEEcC-C-----CeEEEEECCCCCceeeeecccccCCCCc------EEEEEEcCCCCEEEEEcCCC
Confidence 3588899999999999875 2 2456662 22 111111111 112222 37899999999999887665
Q ss_pred CCCCCCccCCCCC--CCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCC
Q 003363 230 SPSKPTFSLGSTK--GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 307 (826)
Q Consensus 230 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~ 307 (826)
... .|+..... .......+........|.++....+++.....|++||+.+++..... ......+..++|+|||+
T Consensus 120 ~i~--~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~ 196 (337)
T 1gxr_A 120 TLS--IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF-QGHTDGASCIDISNDGT 196 (337)
T ss_dssp EEE--EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSS
T ss_pred cEE--EEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee-ecccCceEEEEECCCCC
Confidence 332 22221111 11111223333445667777545556666788999999988765441 23345678899999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEE
Q 003363 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 387 (826)
Q Consensus 308 ~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~ 387 (826)
. |+..+ .+..|+.+|+ .+++..........+....|+|||+.|+
T Consensus 197 ~----l~~~~---------------~dg~i~~~d~-----------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 240 (337)
T 1gxr_A 197 K----LWTGG---------------LDNTVRSWDL-----------------REGRQLQQHDFTSQIFSLGYCPTGEWLA 240 (337)
T ss_dssp E----EEEEE---------------TTSEEEEEET-----------------TTTEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred E----EEEEe---------------cCCcEEEEEC-----------------CCCceEeeecCCCceEEEEECCCCCEEE
Confidence 7 77665 3347889998 5555444444556678899999999988
Q ss_pred EEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCe
Q 003363 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 467 (826)
Q Consensus 388 f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 467 (826)
..+.+ ..|++||+.+++...+.. ....+..+.|+|||+.|+. ...++
T Consensus 241 ~~~~~-----------~~i~~~~~~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~l~~-~~~dg- 287 (337)
T 1gxr_A 241 VGMES-----------SNVEVLHVNKPDKYQLHL--------------------HESCVLSLKFAYCGKWFVS-TGKDN- 287 (337)
T ss_dssp EEETT-----------SCEEEEETTSSCEEEECC--------------------CSSCEEEEEECTTSSEEEE-EETTS-
T ss_pred EEcCC-----------CcEEEEECCCCCeEEEcC--------------------CccceeEEEECCCCCEEEE-ecCCC-
Confidence 77644 358999987754321110 1113446789999996654 33333
Q ss_pred EEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEe
Q 003363 468 QVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 507 (826)
Q Consensus 468 ~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s 507 (826)
.+..+|+.+++..........+....|+++++.++....
T Consensus 288 -~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 326 (337)
T 1gxr_A 288 -LLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSG 326 (337)
T ss_dssp -EEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET
T ss_pred -cEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecC
Confidence 566678888887765555555666778888886665443
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-13 Score=158.60 Aligned_cols=314 Identities=16% Similarity=0.124 Sum_probs=185.3
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (826)
.||||+.+++... ..+.++++. .+.....++... ..+...+|||||++||..+..+ .+.
T Consensus 26 ~spdg~~l~~~~~----------~~v~l~~~~-~~~~~~~~~~h~-----~~v~~~~~spdg~~lasg~~d~-----~v~ 84 (611)
T 1nr0_A 26 NTPAGDKIQYCNG----------TSVYTVPVG-SLTDTEIYTEHS-----HQTTVAKTSPSGYYCASGDVHG-----NVR 84 (611)
T ss_dssp ECTTSSEEEEEET----------TEEEEEETT-CSSCCEEECCCS-----SCEEEEEECTTSSEEEEEETTS-----EEE
T ss_pred eCCCCCEEEeCCC----------CEEEEecCC-CcccCeEecCCC-----CceEEEEECCCCcEEEEEeCCC-----CEE
Confidence 4899999998631 145555553 222233343333 4588999999999999876643 577
Q ss_pred Eec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC--CCCCccCCCCCCCCCCccCCCCCCccee
Q 003363 184 LWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP--SKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (826)
Q Consensus 184 i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (826)
+|+ .++......+ ....+.| ..++|||||+.||..+.+... ....|+. .........+...+....|
T Consensus 85 lWd~~~~~~~~~~~~-~~~~~~v------~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~gh~~~v~~v~f 155 (611)
T 1nr0_A 85 IWDTTQTTHILKTTI-PVFSGPV------KDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNLTGQARAMNSVDF 155 (611)
T ss_dssp EEESSSTTCCEEEEE-ECSSSCE------EEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCCCCCSSCEEEEEE
T ss_pred EeECCCCcceeeEee-cccCCce------EEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcceecCCCCCceEEEE
Confidence 884 2222211111 1222333 899999999999988764321 1122331 2222334456666677889
Q ss_pred ecCCCc-cCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceE
Q 003363 260 EEDWGE-TYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (826)
Q Consensus 260 ~~d~g~-~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~ 338 (826)
.|+... ..++..+..|.+||..+++..... ......+..++|+|||+. |+..+ .+..|.
T Consensus 156 ~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l-~~H~~~V~~v~fspdg~~----las~s---------------~D~~i~ 215 (611)
T 1nr0_A 156 KPSRPFRIISGSDDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNPDGSL----FASTG---------------GDGTIV 215 (611)
T ss_dssp CSSSSCEEEEEETTSCEEEEETTTBEEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTSCEE
T ss_pred CCCCCeEEEEEeCCCeEEEEECCCCeEeeee-ccccCceEEEEECCCCCE----EEEEE---------------CCCcEE
Confidence 888543 456667788999998877654431 233446789999999997 77666 334688
Q ss_pred EEEcccccchhhhhhhhcCCCCCCcc-eecC-------CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEe
Q 003363 339 AVRVSLYKSEASELELKESSSEDLPV-VNLT-------ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 410 (826)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt-------~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d 410 (826)
++|+ .+++. ..+. .+.+.+....|||||++|+..+.+ ..|.+||
T Consensus 216 lwd~-----------------~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D-----------~~v~lWd 267 (611)
T 1nr0_A 216 LYNG-----------------VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD-----------KTIKIWN 267 (611)
T ss_dssp EEET-----------------TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT-----------SEEEEEE
T ss_pred EEEC-----------------CCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC-----------CeEEEEe
Confidence 8887 34433 2332 456678889999999999876654 4588888
Q ss_pred CCCCCCCCccc----------------------ceeeeeeeeeccCCC---CCcccccCCCCCCccccCCCEEEEEEEeC
Q 003363 411 WPTNGNFSSLE----------------------KIVDVIPVVQCAEGD---CFPGLYSSSILSNPWLSDGCTMLLSSIWG 465 (826)
Q Consensus 411 ~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~---~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~ 465 (826)
+.+++...... ..+..+.++...... .+.| +...+..++|+|||+.|+ +...+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g-h~~~v~~l~~spdg~~l~-s~s~D 345 (611)
T 1nr0_A 268 VATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG-HNKAITALSSSADGKTLF-SADAE 345 (611)
T ss_dssp TTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEE-EEETT
T ss_pred CCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC-CCCCEEEEEEeCCCCEEE-EEeCC
Confidence 87754321000 000111222211100 0111 223455788999999665 44444
Q ss_pred CeEEEEEEECCCCcEEEecCC--CCCeeeEEEeecC
Q 003363 466 SSQVIISVNVSSGELLRITPA--ESNFSWSLLTLDG 499 (826)
Q Consensus 466 ~~~~l~~vdl~tg~~~~lt~~--~~~~~~~~~s~dg 499 (826)
+ .+..+|+.+++..++... ...+....+++++
T Consensus 346 ~--~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~ 379 (611)
T 1nr0_A 346 G--HINSWDISTGISNRVFPDVHATMITGIKTTSKG 379 (611)
T ss_dssp S--CEEEEETTTCCEEECSSCSCSSCEEEEEECTTS
T ss_pred C--cEEEEECCCCceeeecccCCcceEEEEEECCCC
Confidence 4 455668888887766422 2234444556443
|
| >3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A {Burkholderia SP} PDB: 1y37_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-16 Score=167.22 Aligned_cols=220 Identities=12% Similarity=0.192 Sum_probs=125.5
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
+.|+||++||.+.. ...|...+..|+ +||.|+++|+||.+ .+..............+++.+.+..+++. ++.
T Consensus 24 ~~p~vv~lHG~~~~--~~~~~~~~~~l~-~g~~v~~~D~~G~G---~s~~~~~~~~~~~~~~~~~~~~l~~~l~~--l~~ 95 (304)
T 3b12_A 24 SGPALLLLHGFPQN--LHMWARVAPLLA-NEYTVVCADLRGYG---GSSKPVGAPDHANYSFRAMASDQRELMRT--LGF 95 (304)
Confidence 45789999997654 446777778887 79999999999944 43321100001122334444444444433 344
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCC-----------------CCCch-------hhhh-
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD-----------------IPDWC-------YVES- 725 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~-----------------~~~~~-------~~~~- 725 (826)
+++.|+|||+||.+++.++.++|++++++|+.+|............ ..... +...
T Consensus 96 ~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (304)
T 3b12_A 96 ERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIPTYVMFEEVDRFVARAYWHWYFLQQPAPYPEKVIGADPDTFYEGC 175 (304)
Confidence 6899999999999999999999999999999988654221100000 00000 0000
Q ss_pred cc-----------CcCCccCCCC---CC--hhhHHHHhhc---C----cccccCCCCCcEEEEEeCCCCCC-CcHHHHHH
Q 003363 726 YG-----------SKGKDSFTES---PS--VEDLTRFHSK---S----PISHISKVKTPTIFLLGAQDLRV-PVSNGLQY 781 (826)
Q Consensus 726 ~~-----------~~~~~~~~~~---~~--~~~~~~~~~~---s----p~~~~~~i~~PvLii~G~~D~~v-p~~~~~~~ 781 (826)
+. ......+... +. ......+... + ....+.++++|+|+++|++|..+ +......+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~~~~~~~~~~~ 255 (304)
T 3b12_A 176 LFGWGATGADGFDPEQLEEYRKQWRDPAAIHGSCCDYRAGGTIDFELDHGDLGRQVQCPALVFSGSAGLMHSLFEMQVVW 255 (304)
Confidence 00 0000000000 00 0000000000 0 00115788999999999999655 44444444
Q ss_pred HHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 782 ARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 782 ~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
.+.+. .++++++ ++||.+..... .++.+.|.+||+++
T Consensus 256 ~~~~~----~~~~~~i-~~gH~~~~e~p-~~~~~~i~~fl~~~ 292 (304)
T 3b12_A 256 APRLA----NMRFASL-PGGHFFVDRFP-DDTARILREFLSDA 292 (304)
Confidence 44433 3677788 99998765443 47788899999765
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.6e-13 Score=140.82 Aligned_cols=258 Identities=9% Similarity=-0.012 Sum_probs=148.0
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEE-EEeCCCCCeEEEEecCCCCCC
Q 003363 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASA-VVPSPSGSKLLVVRNPENESP 179 (826)
Q Consensus 101 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~-~~~SPdG~~la~~~~~~~~~~ 179 (826)
...++|||+.+++.... ...++.+++.+.......++.. ..... ++|||||++|+ +....++..
T Consensus 44 ~~~~s~dg~~l~~~~~~--------~~~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~-~~~~~~~~~ 108 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDF--------CQTLVQIETQLEPPKVVAIQEG------QSSMADVDITPDDQFAV-TVTGLNHPF 108 (331)
T ss_dssp EEEECSSSCEEEEEEST--------TCEEEEEECSSSSCEEEEEEEC------SSCCCCEEECTTSSEEE-ECCCSSSSC
T ss_pred eEEEcCCCCEEEEEeCC--------CCeEEEEECCCCceeEEecccC------CCCccceEECCCCCEEE-EecCCCCcc
Confidence 44568999977554321 2367777653321102223222 23445 89999999998 544332222
Q ss_pred eEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcce
Q 003363 180 IQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 258 (826)
Q Consensus 180 ~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (826)
.+..++ ..++..+.+...... ..+.|||||++|++.....
T Consensus 109 ~i~v~d~~~~~~~~~~~~~~~~----------~~~~~spdg~~l~~~~~~~----------------------------- 149 (331)
T 3u4y_A 109 NMQSYSFLKNKFISTIPIPYDA----------VGIAISPNGNGLILIDRSS----------------------------- 149 (331)
T ss_dssp EEEEEETTTTEEEEEEECCTTE----------EEEEECTTSSCEEEEEETT-----------------------------
T ss_pred cEEEEECCCCCeEEEEECCCCc----------cceEECCCCCEEEEEecCC-----------------------------
Confidence 455554 455555555443333 6899999999887764432
Q ss_pred eecCCCccCCCccCce-EEEEEccC-Cce----EeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeecc
Q 003363 259 WEEDWGETYAGKRQPS-LFVININS-GEV----QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYN 332 (826)
Q Consensus 259 ~~~d~g~~~~~~~~~~-l~v~d~~~-g~~----~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~ 332 (826)
.. |++|+++. |.+ ... .........++|+|||+. |++...
T Consensus 150 --------------~~~i~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~spdg~~----l~v~~~-------------- 195 (331)
T 3u4y_A 150 --------------ANTVRRFKIDADGVLFDTGQEF--ISGGTRPFNITFTPDGNF----AFVANL-------------- 195 (331)
T ss_dssp --------------TTEEEEEEECTTCCEEEEEEEE--ECSSSSEEEEEECTTSSE----EEEEET--------------
T ss_pred --------------CceEEEEEECCCCcEeecCCcc--ccCCCCccceEECCCCCE----EEEEeC--------------
Confidence 23 66666543 222 111 122334678899999997 766652
Q ss_pred CCCceEEEEcccccchhhhhhhhcCCCCCCcc----eecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEE
Q 003363 333 RPCALYAVRVSLYKSEASELELKESSSEDLPV----VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR 408 (826)
Q Consensus 333 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~ 408 (826)
....|+++|+ .+++. ..+. .......+.|||||++|+..... ...|++
T Consensus 196 ~~~~v~v~d~-----------------~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~----------~~~i~~ 247 (331)
T 3u4y_A 196 IGNSIGILET-----------------QNPENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTES----------TVDVFN 247 (331)
T ss_dssp TTTEEEEEEC-----------------SSTTSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSS----------EEEEEE
T ss_pred CCCeEEEEEC-----------------CCCcccceeeecc-CCCCCceEEECCCCCEEEEEEcC----------CCEEEE
Confidence 2347889998 44443 3333 33456789999999987665432 246999
Q ss_pred EeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC
Q 003363 409 IDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA 486 (826)
Q Consensus 409 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~ 486 (826)
+|+.+++...+..- ..-+.. +.. .......++|+|||++|+++.... ..+..+|+.+..+..+...
T Consensus 248 ~d~~~~~~~~~~~~----~~~~~~--~~~----~~~~~~~~~~spdg~~l~v~~~~~--~~v~v~d~~~~~~~~~~~~ 313 (331)
T 3u4y_A 248 FNQLSGTLSFVKSF----GHGLLI--DPR----PLFGANQMALNKTETKLFISANIS--RELKVFTISGKVVGYVAGI 313 (331)
T ss_dssp EETTTTEEEEEEEE----ECCCCC--CCG----GGTTCCCEEECTTSSEEEEEETTT--TEEEEEETTSCEEEECTTC
T ss_pred EECCCCceeeeccc----cccccc--CCC----CcccccceEECCCCCEEEEecCCC--CcEEEEEecCCcccceecc
Confidence 99887654221100 000000 000 001123568999999888765433 3566678877776665443
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.5e-13 Score=142.99 Aligned_cols=261 Identities=11% Similarity=0.012 Sum_probs=154.6
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCC-CccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~-~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
...++|||||+++++..... ..++.++ .+++....+.... ..++ .....+.|||||++|++.......
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~---~~v~~~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~~-- 105 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKS---ESLVKIDLVTGETLGRIDLSTPEERV-----KSLFGAALSPDGKTLAIYESPVRL-- 105 (337)
T ss_dssp CCCEEECTTSSEEEEEETTT---TEEEEEETTTCCEEEEEECCBTTEEE-----ECTTCEEECTTSSEEEEEEEEEEE--
T ss_pred ccceEEcCCCCEEEEEeCCC---CeEEEEECCCCCeEeeEEcCCccccc-----ccccceEECCCCCEEEEEeccccc--
Confidence 56789999999987765432 3465555 4555555444332 0000 012689999999998887432100
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (826)
.++|.. .....|+++|+++++.... ......+..++|+|||+. |
T Consensus 106 --------------------------~~~~~~----~~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~----l 149 (337)
T 1pby_B 106 --------------------------ELTHFE----VQPTRVALYDAETLSRRKA--FEAPRQITMLAWARDGSK----L 149 (337)
T ss_dssp --------------------------CSSCEE----ECCCEEEEEETTTTEEEEE--EECCSSCCCEEECTTSSC----E
T ss_pred --------------------------cccccc----ccCceEEEEECCCCcEEEE--EeCCCCcceeEECCCCCE----E
Confidence 000000 0136899999998876654 233345667899999998 8
Q ss_pred EEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccC
Q 003363 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (826)
Q Consensus 314 vf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~ 393 (826)
++.. ..|+++|+ .+++...............|+|||++|++.....
T Consensus 150 ~~~~-----------------~~i~~~d~-----------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 195 (337)
T 1pby_B 150 YGLG-----------------RDLHVMDP-----------------EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESS 195 (337)
T ss_dssp EEES-----------------SSEEEEET-----------------TTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTT
T ss_pred EEeC-----------------CeEEEEEC-----------------CCCcEeeeeeccccCCCceeCCCccEEeeeccCC
Confidence 7762 16999998 5555443322222223558999999876544322
Q ss_pred CCC----------CC---CCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEE
Q 003363 394 SVD----------SG---AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 460 (826)
Q Consensus 394 ~~~----------~g---~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~ 460 (826)
... .+ +......|+++|+.+++...+. +.+ .......+.|+|||+.|++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-----~~~-------------~~~~~~~~~~s~dg~~l~~ 257 (337)
T 1pby_B 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE-----VRI-------------MDVFYFSTAVNPAKTRAFG 257 (337)
T ss_dssp TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE-----EEE-------------CSSCEEEEEECTTSSEEEE
T ss_pred CceeeeeeccccccccccccccccceEEEeCCCCCceEee-----cCC-------------CCCceeeEEECCCCCEEEE
Confidence 100 00 0001126889998876542111 000 0012235789999998876
Q ss_pred EEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 461 SSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 461 ~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
. ...|+.+|+.+++...............|+++|+.+++. .. ...|.+.++.+.
T Consensus 258 ~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~---~~~i~v~d~~~~ 311 (337)
T 1pby_B 258 A-----YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG-GA---LGDLAAYDAETL 311 (337)
T ss_dssp E-----ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEE-SB---SSEEEEEETTTC
T ss_pred e-----CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEE-cC---CCcEEEEECcCC
Confidence 6 357899999998876554433334556889999977765 22 356888886544
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-12 Score=137.91 Aligned_cols=234 Identities=11% Similarity=0.043 Sum_probs=147.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEe-cCCCccccccCCCcccceeecCCCCeEEEEeecCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~-~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~ 230 (826)
..+...+||||+ +|+..+..+ .+.+| ..++...... ...+..+.| ..++|||||++|+..+.+
T Consensus 83 ~~v~~~~~s~d~-~l~~~s~dg-----~v~lWd~~~~~~~~~~~~~~~~H~~~V------~~v~~spdg~~l~sgs~d-- 148 (344)
T 4gqb_B 83 AGVADLTWVGER-GILVASDSG-----AVELWELDENETLIVSKFCKYEHDDIV------STVSVLSSGTQAVSGSKD-- 148 (344)
T ss_dssp SCEEEEEEETTT-EEEEEETTS-----EEEEEEECTTSSCEEEEEEEECCSSCE------EEEEECTTSSEEEEEETT--
T ss_pred CCEEEEEEeCCC-eEEEEECCC-----EEEEEeccCCCceeEeeccccCCCCCE------EEEEECCCCCEEEEEeCC--
Confidence 358899999996 455554432 45666 2333322222 112333334 899999999999886543
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003363 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
..|.+||+.+++..... ......+..++|+||++.
T Consensus 149 ------------------------------------------~~i~iwd~~~~~~~~~~-~~h~~~V~~~~~~~~~~~-- 183 (344)
T 4gqb_B 149 ------------------------------------------ICIKVWDLAQQVVLSSY-RAHAAQVTCVAASPHKDS-- 183 (344)
T ss_dssp ------------------------------------------SCEEEEETTTTEEEEEE-CCCSSCEEEEEECSSCTT--
T ss_pred ------------------------------------------CeEEEEECCCCcEEEEE-cCcCCceEEEEecCCCCC--
Confidence 46899999998765441 233456788999999988
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCC--CCccccCceecCCCCEEE
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTE--SISSAFFPRFSPDGKFLV 387 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~--~~~~~~~p~~SpDG~~l~ 387 (826)
++.++. .+..|.++|+ .+++ ...+.. .........|+|++..++
T Consensus 184 --~l~s~s--------------~D~~v~iwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l 230 (344)
T 4gqb_B 184 --VFLSCS--------------EDNRILLWDT-----------------RCPKPASQIGCSAPGYLPTSLAWHPQQSEVF 230 (344)
T ss_dssp --EEEEEE--------------TTSCEEEEET-----------------TSSSCEEECC----CCCEEEEEECSSCTTEE
T ss_pred --ceeeec--------------cccccccccc-----------------cccceeeeeecceeeccceeeeecCCCCcce
Confidence 766552 2347888998 4444 334432 233466789999765544
Q ss_pred EEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCe
Q 003363 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 467 (826)
Q Consensus 388 f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 467 (826)
.....+ ..|.+||+.+++....... +...+..++|+|||..++++...++.
T Consensus 231 ~sg~~d----------g~v~~wd~~~~~~~~~~~~-------------------h~~~v~~v~fsp~g~~~lasgs~D~~ 281 (344)
T 4gqb_B 231 VFGDEN----------GTVSLVDTKSTSCVLSSAV-------------------HSQCVTGLVFSPHSVPFLASLSEDCS 281 (344)
T ss_dssp EEEETT----------SEEEEEESCC--CCEEEEC-------------------CSSCEEEEEECSSSSCCEEEEETTSC
T ss_pred EEeccC----------CcEEEEECCCCcEEEEEcC-------------------CCCCEEEEEEccCCCeEEEEEeCCCe
Confidence 333322 4689999887654321111 11234567899999777776665555
Q ss_pred EEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCC
Q 003363 468 QVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPV 510 (826)
Q Consensus 468 ~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~ 510 (826)
..| +|+.++++.++......+....|+|+++.++++++...
T Consensus 282 i~v--wd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~ 322 (344)
T 4gqb_B 282 LAV--LDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDH 322 (344)
T ss_dssp EEE--ECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred EEE--EECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCC
Confidence 444 58889988877665556666789999988877766443
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.2e-13 Score=140.21 Aligned_cols=261 Identities=10% Similarity=0.074 Sum_probs=181.1
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCC--------
Q 003363 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN-------- 176 (826)
Q Consensus 105 s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~-------- 176 (826)
+.||.+|.|+... + ...|+.++ .++...++|+.. ...-++|+|++|+|+....+
T Consensus 22 ~~~g~~iy~~n~~-d------~~~ly~~~--~dg~~~~~l~~~---------~~~~i~~~g~~Iyy~~~~~~~~~~~~~~ 83 (302)
T 3s25_A 22 CESDGEVFFSNTN-D------NGRLYAMN--IDGSNIHKLSND---------TAMYINADKNYVYYVRNNNQKITSQTFF 83 (302)
T ss_dssp EEETTEEEEEEGG-G------TTEEEEEE--TTSCSCEEEEEE---------EEEEEEECSSEEEEEEECC------CCS
T ss_pred EEeCCEEEEEeCC-C------CceEEEEc--CCCCCCEEccCC---------ceeeEEEcCCEEEEEECCCCccccccee
Confidence 4788999887432 1 24677765 455566666543 23466899999999987642
Q ss_pred --CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCC
Q 003363 177 --ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSW 253 (826)
Q Consensus 177 --~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (826)
....++.+. ++++.++++. . .+..|+|+|++|+|......
T Consensus 84 ~~n~~~Iy~i~~dg~~~~~l~~---~-----------~~~~~s~~g~~Iy~~~~~~~----------------------- 126 (302)
T 3s25_A 84 SYDRNSLCRIKRNGHGSTVLDP---D-----------PCIYASLIGNYIYYLHYDTQ----------------------- 126 (302)
T ss_dssp SCCSEEEEEEETTSCCCEEEEC---S-----------CEEEEEEETTEEEEEEESSS-----------------------
T ss_pred ccCCCeEEEEeCCCCcceEeec---C-----------CccEEEEeCCEEEEEeecCC-----------------------
Confidence 134577787 4445444442 2 24579999999999851110
Q ss_pred CCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccC
Q 003363 254 KGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNR 333 (826)
Q Consensus 254 ~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~ 333 (826)
....||++++++.+.++|+ .... ..|+|+|+. |+|+.. .
T Consensus 127 -----------------~~~~Iy~~~~dGs~~~~lt--~~~~----~~~~~~g~~----iy~t~~--------------g 165 (302)
T 3s25_A 127 -----------------TATSLYRIRIDGEEKKKIK--NHYL----FTCNTSDRY----FYYNNP--------------K 165 (302)
T ss_dssp -----------------SCEEEEEEETTSCCCEEEE--SSCC----CCSEEETTE----EEEECT--------------T
T ss_pred -----------------CCceEEEEECCCCCeEEEe--CCCc----eEeeEECCE----EEEEeC--------------C
Confidence 3478999999998888883 3332 357899999 999873 2
Q ss_pred CCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 334 PCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 334 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
...||++++ +++..++|..+.. ..| ++|+|++|+|..... ..+|+++++++
T Consensus 166 ~~~Iy~~~l-----------------~g~~~~~l~~~~~--~~~-~~P~g~~iy~t~~~~---------~~~I~~~~ldG 216 (302)
T 3s25_A 166 NGQLYRYDT-----------------ASQSEALFYDCNC--YKP-VVLDDTNVYYMDVNR---------DNAIVHVNINN 216 (302)
T ss_dssp TCCEEEEET-----------------TTTEEEEEECSCE--EEE-EEEETTEEEEEEGGG---------TTEEEEECSSS
T ss_pred CceEEEEEC-----------------CCCCEEEEeCCCc--cce-eeecCCEEEEEEcCC---------CcEEEEEECCC
Confidence 237999998 7777777765432 335 559999999987653 26899999998
Q ss_pred CCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeE
Q 003363 414 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWS 493 (826)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~ 493 (826)
+..+.++... .+.|+|+|++||+..... ...|+++++++...++|.... ..
T Consensus 217 ~~~~~Lt~~~------------------------~~~~~~~g~~Iy~~~~~~-~~~i~~~~~DG~~r~~l~~~~----~~ 267 (302)
T 3s25_A 217 PNPVVLTEAN------------------------IEHYNVYGSLIFYQRGGD-NPALCVVKNDGTGFKELAKGE----FC 267 (302)
T ss_dssp CCCEECSCSC------------------------EEEEEEETTEEEEEECSS-SCEEEEEETTSCCCEEEEESC----EE
T ss_pred CCeEEEeCCC------------------------cceEEECCCEEEEEECCC-CcEEEEEECCCCccEEeeCCc----cc
Confidence 8776665322 124789999998875443 478999999998888887653 23
Q ss_pred EEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003363 494 LLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (826)
Q Consensus 494 ~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 522 (826)
.+++.+++|+++...... |+..++.+
T Consensus 268 ~i~i~~d~Iy~td~~~~~---i~~~~~dG 293 (302)
T 3s25_A 268 NINVTSQYVYFTDFVSNK---EYCTSTQN 293 (302)
T ss_dssp EEEECSSEEEEEETTTCC---EEEEESSS
T ss_pred eEEEeCCEEEEEECCCCe---EEEEECCC
Confidence 678899999998754443 77766543
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-13 Score=157.48 Aligned_cols=264 Identities=18% Similarity=0.153 Sum_probs=167.3
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
..+...+++|||+.|+.....+ .+.+|+ .+...+... .....+ ..++|+|||+.|+....+....
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~-----~i~~w~~~~~~~~~~~---~~~~~v------~~~~~s~~g~~l~~~~~dg~v~ 369 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDK-----TVKLWNRNGQHLQTLT---GHSSSV------WGVAFSPDGQTIASASDDKTVK 369 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEETTSCEEEEEC---CCSSCE------EEEEECTTSSEEEEEETTSEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCC-----eEEEEeCCCCeeEEEe---CCCCCE------EEEEECCCCCEEEEEeCCCEEE
Confidence 4578899999999999876543 466773 332222221 111222 6899999999999887665432
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (826)
.|+. ..........+........|++|.....++.....|.+||..+..++.+ ......+..++|+||++.
T Consensus 370 --~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~--~~~~~~v~~~~~s~d~~~---- 440 (577)
T 2ymu_A 370 --LWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVWGVAFSPDDQT---- 440 (577)
T ss_dssp --EEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEE--ECCSSCEEEEEECTTSSE----
T ss_pred --EEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEe--cCCCCCeEEEEECCCCCE----
Confidence 2221 1111112223344445667888854445555678899999766656666 334456778999999997
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
|+..+ .+..|..+|+ .+.....+..+...+....|||||++|+..+.+
T Consensus 441 l~~~~---------------~d~~v~~w~~-----------------~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d 488 (577)
T 2ymu_A 441 IASAS---------------DDKTVKLWNR-----------------NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 488 (577)
T ss_dssp EEEEE---------------TTSEEEEEET-----------------TSCEEEEEECCSSCEEEEEECTTSCEEEEEETT
T ss_pred EEEEc---------------CCCEEEEEEC-----------------CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 77665 2336788887 556667777777788889999999998866644
Q ss_pred CCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003363 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (826)
..|.+||..+ +... . +.. +...+..++|+|||+.|+ +...++. |..
T Consensus 489 -----------~~i~iw~~~~-~~~~---------~-~~~---------h~~~v~~l~~s~dg~~l~-s~~~dg~--v~l 534 (577)
T 2ymu_A 489 -----------KTVKLWNRNG-QLLQ---------T-LTG---------HSSSVRGVAFSPDGQTIA-SASDDKT--VKL 534 (577)
T ss_dssp -----------SEEEEEETTS-CEEE---------E-EEC---------CSSCEEEEEECTTSSCEE-EEETTSE--EEE
T ss_pred -----------CEEEEEcCCC-CEEE---------E-EeC---------CCCCEEEEEEcCCCCEEE-EEECcCE--EEE
Confidence 4588888543 2110 0 000 112345778999999664 4444454 455
Q ss_pred EECCCCcEEEecCCCCCeeeEEEeecCCEEEEEE
Q 003363 473 VNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 473 vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ 506 (826)
+|..+..+..+......+....|++|++.|+...
T Consensus 535 wd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~ 568 (577)
T 2ymu_A 535 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 568 (577)
T ss_dssp ECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred EeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 5765555555655555666678999998776543
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.6e-12 Score=137.09 Aligned_cols=249 Identities=12% Similarity=0.123 Sum_probs=157.4
Q ss_pred ccEEEEeCCCCCeEEEEecCCC---CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPEN---ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~---~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~ 230 (826)
....+++||||++|++...... ....++.++ ..++..+.+...... ..+.|||||++|++....
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~----------~~~~~s~dg~~l~v~~~~-- 109 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKP----------FGATINNTTQTLWFGNTV-- 109 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCC----------CSEEEETTTTEEEEEETT--
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCc----------ceEEECCCCCEEEEEecC--
Confidence 3667899999999977654321 133455555 456666666554444 689999999988776432
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCC--------CccceEEE
Q 003363 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS--------LSVGQVVW 302 (826)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~--------~~~~~~~w 302 (826)
...|+++|++++++......... .....++|
T Consensus 110 -----------------------------------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (353)
T 3vgz_A 110 -----------------------------------------NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVA 148 (353)
T ss_dssp -----------------------------------------TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEE
T ss_pred -----------------------------------------CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEE
Confidence 25799999998886443111111 12567899
Q ss_pred eeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCC-CCccccCceecC
Q 003363 303 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSP 381 (826)
Q Consensus 303 SPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~Sp 381 (826)
+|||+. |++.... ....|+.+|+ .+++...... .........|+|
T Consensus 149 s~dg~~----l~~~~~~-------------~~~~i~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~s~ 194 (353)
T 3vgz_A 149 DDATNT----VYISGIG-------------KESVIWVVDG-----------------GNIKLKTAIQNTGKMSTGLALDS 194 (353)
T ss_dssp ETTTTE----EEEEEES-------------SSCEEEEEET-----------------TTTEEEEEECCCCTTCCCCEEET
T ss_pred CCCCCE----EEEEecC-------------CCceEEEEcC-----------------CCCceEEEecCCCCccceEEECC
Confidence 999997 7666522 2236999998 5555544333 334467889999
Q ss_pred CCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEE
Q 003363 382 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 461 (826)
Q Consensus 382 DG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~ 461 (826)
||++|+..... ..|+++|+.+++... .+.....+. ......+.|+|||+.++++
T Consensus 195 dg~~l~~~~~~-----------~~i~~~d~~~~~~~~----------~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 195 EGKRLYTTNAD-----------GELITIDTADNKILS----------RKKLLDDGK-----EHFFINISLDTARQRAFIT 248 (353)
T ss_dssp TTTEEEEECTT-----------SEEEEEETTTTEEEE----------EEECCCSSS-----CCCEEEEEEETTTTEEEEE
T ss_pred CCCEEEEEcCC-----------CeEEEEECCCCeEEE----------EEEcCCCCC-----CcccceEEECCCCCEEEEE
Confidence 99988765432 468999987754321 111100000 0012246899999988766
Q ss_pred EEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003363 462 SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (826)
Q Consensus 462 ~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 522 (826)
. .....|+.+|+.+++.......... ....++++++.+++..... ..|.+.++.+
T Consensus 249 ~--~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~---~~v~~~d~~~ 303 (353)
T 3vgz_A 249 D--SKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQA---GKVSVIDAKS 303 (353)
T ss_dssp E--SSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTT---TEEEEEETTT
T ss_pred e--CCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCC---CeEEEEECCC
Confidence 4 3445788889988887654433222 3467899999877765433 3577777543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-13 Score=151.75 Aligned_cols=290 Identities=10% Similarity=-0.024 Sum_probs=175.2
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecC--CCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVP--QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~--~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
+...+||| +..+++....+ + .+...+ ..++..+.+... .+..+.+ ..+.|+|||+.++..+.+....
T Consensus 125 ~~~~~~s~-~~~~~~~~~~~-~--~i~~~d~~~g~~~~~~~~~~~~~~~~~v------~~~~~~~~~~~~~s~~~d~~v~ 194 (433)
T 3bws_A 125 PKSVRFID-NTRLAIPLLED-E--GMDVLDINSGQTVRLSPPEKYKKKLGFV------ETISIPEHNELWVSQMQANAVH 194 (433)
T ss_dssp BCCCEESS-SSEEEEEBTTS-S--SEEEEETTTCCEEEECCCHHHHTTCCEE------EEEEEGGGTEEEEEEGGGTEEE
T ss_pred ceEEEEeC-CCeEEEEeCCC-C--eEEEEECCCCeEeeecCcccccccCCce------eEEEEcCCCEEEEEECCCCEEE
Confidence 55789999 55666665432 2 243333 344444433221 1222233 6889999998776665544322
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCc-cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGK-RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~-~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
.|+............+........|.++....+... ....|++||+.+++.... ......+..++|+|||+.
T Consensus 195 --~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~g~~--- 267 (433)
T 3bws_A 195 --VFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK--TDKIGLPRGLLLSKDGKE--- 267 (433)
T ss_dssp --EEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--CCCCSEEEEEEECTTSSE---
T ss_pred --EEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE--ecCCCCceEEEEcCCCCE---
Confidence 233221111111222334445667888854443333 567899999998887665 444556788999999997
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEec
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~ 391 (826)
|++.+.....- ...+..|+++|+ .+++.............+.|+|||++|++...
T Consensus 268 -l~~~~~~~~~~-------~~~dg~i~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 322 (433)
T 3bws_A 268 -LYIAQFSASNQ-------ESGGGRLGIYSM-----------------DKEKLIDTIGPPGNKRHIVSGNTENKIYVSDM 322 (433)
T ss_dssp -EEEEEEESCTT-------CSCCEEEEEEET-----------------TTTEEEEEEEEEECEEEEEECSSTTEEEEEET
T ss_pred -EEEEECCCCcc-------ccCCCeEEEEEC-----------------CCCcEEeeccCCCCcceEEECCCCCEEEEEec
Confidence 87766322110 012347999998 55555444444445677899999998877764
Q ss_pred cCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCC-----
Q 003363 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS----- 466 (826)
Q Consensus 392 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~----- 466 (826)
.+ ..|++||+.+++... .+.. ...+..++|+|||+.|++.....+
T Consensus 323 ~~----------~~v~v~d~~~~~~~~----------~~~~----------~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 372 (433)
T 3bws_A 323 CC----------SKIEVYDLKEKKVQK----------SIPV----------FDKPNTIALSPDGKYLYVSCRGPNHPTEG 372 (433)
T ss_dssp TT----------TEEEEEETTTTEEEE----------EEEC----------SSSEEEEEECTTSSEEEEEECCCCCTTTC
T ss_pred CC----------CEEEEEECCCCcEEE----------EecC----------CCCCCeEEEcCCCCEEEEEecCCCccccc
Confidence 43 579999988654321 1110 012346789999998877665433
Q ss_pred -------eEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEee
Q 003363 467 -------SQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 520 (826)
Q Consensus 467 -------~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 520 (826)
+..|+.+|+.+++...............|+++++.+++..... ..+.+.++
T Consensus 373 ~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d---~~i~v~~~ 430 (433)
T 3bws_A 373 YLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLD---HQIRVYRR 430 (433)
T ss_dssp TTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTT---TEEEEEEE
T ss_pred cccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCC---CeEEEEEe
Confidence 2389999999988777665544556678899998877655422 23555553
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.53 E-value=8.1e-13 Score=144.68 Aligned_cols=245 Identities=11% Similarity=0.105 Sum_probs=157.1
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003363 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (826)
Q Consensus 102 ~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (826)
..++|||+.++++... ...++++++. .++.......+ ..+...+|||||++|++....+ ..+
T Consensus 37 ~~~s~dg~~l~~~~~~--------d~~i~v~d~~--~~~~~~~~~~~-----~~v~~~~~spdg~~l~~~~~~~---~~v 98 (391)
T 1l0q_A 37 AVISPDGTKVYVANAH--------SNDVSIIDTA--TNNVIATVPAG-----SSPQGVAVSPDGKQVYVTNMAS---STL 98 (391)
T ss_dssp EEECTTSSEEEEEEGG--------GTEEEEEETT--TTEEEEEEECS-----SSEEEEEECTTSSEEEEEETTT---TEE
T ss_pred EEECCCCCEEEEECCC--------CCeEEEEECC--CCeEEEEEECC-----CCccceEECCCCCEEEEEECCC---CEE
Confidence 3458999988665322 3466776652 22322222222 2578899999999998875432 234
Q ss_pred EEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceee
Q 003363 182 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (826)
Q Consensus 182 ~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (826)
..++ ..++....+...... ..++|+|||++|++....
T Consensus 99 ~v~d~~~~~~~~~~~~~~~~----------~~~~~s~dg~~l~~~~~~-------------------------------- 136 (391)
T 1l0q_A 99 SVIDTTSNTVAGTVKTGKSP----------LGLALSPDGKKLYVTNNG-------------------------------- 136 (391)
T ss_dssp EEEETTTTEEEEEEECSSSE----------EEEEECTTSSEEEEEETT--------------------------------
T ss_pred EEEECCCCeEEEEEeCCCCc----------ceEEECCCCCEEEEEeCC--------------------------------
Confidence 4333 345554444433333 689999999999776432
Q ss_pred cCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEE
Q 003363 261 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 340 (826)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~ 340 (826)
...|++||+.+++.... ......+..++|+|||+. |++.+. ....|+++
T Consensus 137 -----------~~~v~~~d~~~~~~~~~--~~~~~~~~~~~~~~dg~~----l~~~~~--------------~~~~v~~~ 185 (391)
T 1l0q_A 137 -----------DKTVSVINTVTKAVINT--VSVGRSPKGIAVTPDGTK----VYVANF--------------DSMSISVI 185 (391)
T ss_dssp -----------TTEEEEEETTTTEEEEE--EECCSSEEEEEECTTSSE----EEEEET--------------TTTEEEEE
T ss_pred -----------CCEEEEEECCCCcEEEE--EecCCCcceEEECCCCCE----EEEEeC--------------CCCEEEEE
Confidence 36799999998887655 333445678999999997 766542 23479999
Q ss_pred EcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcc
Q 003363 341 RVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL 420 (826)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~ 420 (826)
|+ .+++...............|+|||++|+..+... ....|++||+.+++....
T Consensus 186 d~-----------------~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~--------~~~~v~~~d~~~~~~~~~- 239 (391)
T 1l0q_A 186 DT-----------------VTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK--------YFNTVSMIDTGTNKITAR- 239 (391)
T ss_dssp ET-----------------TTTEEEEEEECSSEEEEEEECTTSSEEEEEEECS--------SCCEEEEEETTTTEEEEE-
T ss_pred EC-----------------CCCeEEEEEecCCCccceEECCCCCEEEEEecCc--------CCCcEEEEECCCCeEEEE-
Confidence 98 5555544444445567789999999988777531 235799999877543211
Q ss_pred cceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003363 421 EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (826)
Q Consensus 421 ~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt 484 (826)
+... ..+..+.|+|||+.|+++...+ ..+..+|+.+++.....
T Consensus 240 ---------~~~~----------~~~~~~~~s~dg~~l~~s~~~d--~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 240 ---------IPVG----------PDPAGIAVTPDGKKVYVALSFX--NTVSVIDTATNTITATM 282 (391)
T ss_dssp ---------EECC----------SSEEEEEECTTSSEEEEEETTT--TEEEEEETTTTEEEEEE
T ss_pred ---------EecC----------CCccEEEEccCCCEEEEEcCCC--CEEEEEECCCCcEEEEE
Confidence 1100 0123568999999887765433 45777799888876543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-13 Score=161.56 Aligned_cols=255 Identities=13% Similarity=0.122 Sum_probs=160.0
Q ss_pred eCCCCCeEEEEecCCCCCC-eEEEEec---CCc---eeEEEecCCC--ccccccCCCcccceeec-CCCCeEEEEeecCC
Q 003363 161 PSPSGSKLLVVRNPENESP-IQFELWS---QSQ---LEKEFHVPQT--VHGSVYADGWFEGISWN-SDETLIAYVAEEPS 230 (826)
Q Consensus 161 ~SPdG~~la~~~~~~~~~~-~~~~i~~---~~~---~~~~~~~~~~--~~g~v~~~~~~~~~~wS-PDg~~ia~~~~~~~ 230 (826)
+.|+|.+++|.+..+++.. .++.... .+. .+.+++.... .|+. -....++|| |||++|||+....
T Consensus 122 p~~~g~~~yy~~~~~g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~----~~~~~~~~S~PDG~~lAy~~~~~- 196 (751)
T 2xe4_A 122 PYVYGKYRYYTREVKGKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAF----CDVMEVKPAPPEHDLVAFSVDMS- 196 (751)
T ss_dssp CEEETTEEEEEEECTTCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSC----CEEEEEEECTTTTCEEEEEEESS-
T ss_pred CeEECCEEEEEEECCCCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCe----EEEeeeEecCCCCCEEEEEEeCC-
Confidence 3479999999988764433 3444443 343 3444443211 1110 023689999 9999999987653
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCC-ceEeccCCCCCCccceEEEeeCCCCC
Q 003363 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG-EVQAVKGIPKSLSVGQVVWAPLNEGL 309 (826)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g-~~~~l~~~~~~~~~~~~~wSPDg~~~ 309 (826)
| .....||++|+++| +. +. ..-......++|||||+.
T Consensus 197 ---------------------------------G-----~~~~~l~v~dl~~g~~~--l~-~~~~~~~~~~~WspDg~~- 234 (751)
T 2xe4_A 197 ---------------------------------G-----NEVYTIEFKRISDPSQT--IA-DKVSGTNGEIVWGPDHTS- 234 (751)
T ss_dssp ---------------------------------S-----SSCEEEEEEETTCTTCC--CC-CCEEEECSCCEECSSTTE-
T ss_pred ---------------------------------C-----CceEEEEEEECCCCCEe--CC-ccccCceeeEEEecCCCE-
Confidence 1 12357999999998 62 21 000112457899999999
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc--eecCC--CCccccCceecCCCCE
Q 003363 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLTE--SISSAFFPRFSPDGKF 385 (826)
Q Consensus 310 ~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~Lt~--~~~~~~~p~~SpDG~~ 385 (826)
|+|+..... .++..||++++ .+++. +.+.. .......+.|||||++
T Consensus 235 ---l~y~~~d~~----------~~~~~v~~~~l-----------------gt~~~~~~lv~~~~~~~~~~~~~~SpDg~~ 284 (751)
T 2xe4_A 235 ---LFYVTKDET----------LRENKVWRHVM-----------------GKLQSEDVCLYEEHNPLFSAFMYKAADTNT 284 (751)
T ss_dssp ---EEEEEECTT----------CCEEEEEEEET-----------------TSCGGGCEEEEECCCTTCEEEEEECTTSSE
T ss_pred ---EEEEEECCC----------CCCCEEEEEEC-----------------CCCchhcEEEEecCCCceEEEEEECCCCCE
Confidence 999874321 13348999998 44432 23322 2234567899999999
Q ss_pred EEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccC---CCEEEEEE
Q 003363 386 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD---GCTMLLSS 462 (826)
Q Consensus 386 l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~D---g~~l~~~~ 462 (826)
|+|.+... ...+||++|+.++.... .+..+... .....|++| |+.|+|.+
T Consensus 285 l~~~~~~~--------~~~~l~~~d~~~~~~~~------~~~~l~~~-------------~~~~~~s~~~~~g~~l~~~t 337 (751)
T 2xe4_A 285 LCIGSQSP--------ETAEVHLLDLRKGNAHN------TLEIVRPR-------------EKGVRYDVQMHGTSHLVILT 337 (751)
T ss_dssp EEEEEECS--------SCEEEEEEESSSCTTCC------CEEESSCC-------------CTTCCEEEEEETTTEEEEEE
T ss_pred EEEEecCC--------CCceEEEEECCCCCCCc------eeEEeecC-------------CCCceEEEeeeeCCEEEEEe
Confidence 99998653 35789999998752110 00111100 113346666 88899988
Q ss_pred EeC--CeEEEEEEECCC-CcEEE-ecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEee
Q 003363 463 IWG--SSQVIISVNVSS-GELLR-ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 520 (826)
Q Consensus 463 ~~~--~~~~l~~vdl~t-g~~~~-lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 520 (826)
... +..+|+.+|+++ ++.+. +...........++++++.|++.... ....+|+++++
T Consensus 338 ~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~-~g~~~l~~~dl 398 (751)
T 2xe4_A 338 NEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRR-AGLTRIWTMMA 398 (751)
T ss_dssp CTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEE-TTEEEEEEEEC
T ss_pred CCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEe-CCEEEEEEEec
Confidence 765 677999999986 45555 55554444555677788888777654 34567888885
|
| >2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-14 Score=149.29 Aligned_cols=213 Identities=15% Similarity=0.163 Sum_probs=124.3
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.|.||++||.+.+ ...|...+..|+ .+|.|+++|+|| +|.+.. + .....++++.+.+..+++. ++.+
T Consensus 27 ~p~vvllHG~~~~--~~~w~~~~~~L~-~~~rvia~DlrG---hG~S~~---~--~~~~~~~~~a~dl~~ll~~--l~~~ 93 (276)
T 2wj6_A 27 GPAILLLPGWCHD--HRVYKYLIQELD-ADFRVIVPNWRG---HGLSPS---E--VPDFGYQEQVKDALEILDQ--LGVE 93 (276)
T ss_dssp SCEEEEECCTTCC--GGGGHHHHHHHT-TTSCEEEECCTT---CSSSCC---C--CCCCCHHHHHHHHHHHHHH--HTCC
T ss_pred CCeEEEECCCCCc--HHHHHHHHHHHh-cCCEEEEeCCCC---CCCCCC---C--CCCCCHHHHHHHHHHHHHH--hCCC
Confidence 4789999997654 567888888886 479999999999 444421 1 1123455555555555554 3457
Q ss_pred cEEEEEecchHHHHHHHHHhC-CCceeEEEecCCccch-----h-hhccCCCCCCchh-----hhhccCcC---------
Q 003363 672 KVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNL-----A-LMVGTTDIPDWCY-----VESYGSKG--------- 730 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~p~~~~-----~-~~~~~~~~~~~~~-----~~~~~~~~--------- 730 (826)
++.|+||||||.+++.++.++ |++++++|+.++.... . .+........|.. ...+....
T Consensus 94 ~~~lvGhSmGG~va~~~A~~~~P~rv~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (276)
T 2wj6_A 94 TFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDWLMWAPKPDFAKSLTLLKDPERWREGTHGLFDVWLDGHDEKRVRHHL 173 (276)
T ss_dssp SEEEEEEGGGHHHHHHHHHHHHHHHSCCEEEESCCCSSCCHHHHHHHHHHHCTTTHHHHHHHHHHHHHTTBCCHHHHHHH
T ss_pred ceEEEEECHHHHHHHHHHHHhCHHhhceEEEecccccCCCchHHHHhhhccCcchHHHHHHHHHHHhhcccchHHHHHHH
Confidence 899999999999999999999 9999999998753210 0 0000000011100 00000000
Q ss_pred CccCCCCCChhhH----H----HHh-hcCcccccCCCCCcEEEEEeCCCCCCC-c-HHHHHHHHHHHhCCCCEEEEEeCC
Q 003363 731 KDSFTESPSVEDL----T----RFH-SKSPISHISKVKTPTIFLLGAQDLRVP-V-SNGLQYARALREKGVETKVIVFPN 799 (826)
Q Consensus 731 ~~~~~~~~~~~~~----~----~~~-~~sp~~~~~~i~~PvLii~G~~D~~vp-~-~~~~~~~~~l~~~g~~~~~~~~p~ 799 (826)
...... ...+.. . .+. ..++...+.++++|+|+++|..|...+ + .....+.+.+ ...+++++|+
T Consensus 174 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lv~~~~~~~~~~~~~~~~~~~~~~~----p~a~~~~i~~ 248 (276)
T 2wj6_A 174 LEEMAD-YGYDCWGRSGRVIEDAYGRNGSPMQMMANLTKTRPIRHIFSQPTEPEYEKINSDFAEQH----PWFSYAKLGG 248 (276)
T ss_dssp HTTTTT-CCHHHHHHHHHHHHHHHHHHCCHHHHHHTCSSCCCEEEEECCSCSHHHHHHHHHHHHHC----TTEEEEECCC
T ss_pred HHHhhh-cchhhhhhccchhHHHHhhccchhhHHhhcCCCceEEEEecCccchhHHHHHHHHHhhC----CCeEEEEeCC
Confidence 000000 000000 0 000 012234567789999999875443332 1 2223333333 3589999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 800 DVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 800 ~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+||....++ ..++...+.+||.+
T Consensus 249 ~gH~~~~e~-P~~~~~~i~~Fl~~ 271 (276)
T 2wj6_A 249 PTHFPAIDV-PDRAAVHIREFATA 271 (276)
T ss_dssp SSSCHHHHS-HHHHHHHHHHHHHH
T ss_pred CCCcccccC-HHHHHHHHHHHHhh
Confidence 999765443 45788899999975
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-12 Score=138.02 Aligned_cols=259 Identities=10% Similarity=0.031 Sum_probs=146.7
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (826)
++|||+.+++.... ...+.+++++..++....+...+.. ......+|||||++|++....+ +.-.+|.
T Consensus 45 ~spdg~~l~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~-~~i~~~d 112 (343)
T 1ri6_A 45 VSPDKRYLYVGVRP--------EFRVLAYRIAPDDGALTFAAESALP---GSLTHISTDHQGQFVFVGSYNA-GNVSVTR 112 (343)
T ss_dssp ECTTSSEEEEEETT--------TTEEEEEEECTTTCCEEEEEEEECS---SCCSEEEECTTSSEEEEEETTT-TEEEEEE
T ss_pred ECCCCCEEEEeecC--------CCeEEEEEecCCCCceeeccccccC---CCCcEEEEcCCCCEEEEEecCC-CeEEEEE
Confidence 48999988665322 1355666664333333333211111 2467889999999998776532 3223333
Q ss_pred EecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCC
Q 003363 184 LWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW 263 (826)
Q Consensus 184 i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 263 (826)
+. .+...+....... +.. ...+.|||||+.|+....
T Consensus 113 ~~-~~~~~~~~~~~~~-~~~------~~~~~~s~dg~~l~~~~~------------------------------------ 148 (343)
T 1ri6_A 113 LE-DGLPVGVVDVVEG-LDG------CHSANISPDNRTLWVPAL------------------------------------ 148 (343)
T ss_dssp EE-TTEEEEEEEEECC-CTT------BCCCEECTTSSEEEEEEG------------------------------------
T ss_pred CC-CCccccccccccC-CCC------ceEEEECCCCCEEEEecC------------------------------------
Confidence 32 3322222221111 111 268899999998876532
Q ss_pred CccCCCccCceEEEEEccC-CceEecc----CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceE
Q 003363 264 GETYAGKRQPSLFVININS-GEVQAVK----GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (826)
Q Consensus 264 g~~~~~~~~~~l~v~d~~~-g~~~~l~----~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~ 338 (826)
....|++||+.+ +++..+. .......+..++|+|||+. |+++.. ....|+
T Consensus 149 -------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~----l~~~~~--------------~~~~i~ 203 (343)
T 1ri6_A 149 -------KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY----AYCVNE--------------LNSSVD 203 (343)
T ss_dssp -------GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE----EEEEET--------------TTTEEE
T ss_pred -------CCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCE----EEEEeC--------------CCCEEE
Confidence 125799999987 7664321 0222335567899999997 766652 223677
Q ss_pred EEEcccccchhhhhhhhcCCCCCCcce---e---cCCC---CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEE
Q 003363 339 AVRVSLYKSEASELELKESSSEDLPVV---N---LTES---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 409 (826)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~~---~---Lt~~---~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~ 409 (826)
+++++. .+++.. . +... ......+.|+|||++|+..... ...|.+|
T Consensus 204 ~~~~~~---------------~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~----------~~~i~v~ 258 (343)
T 1ri6_A 204 VWELKD---------------PHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT----------ASLITVF 258 (343)
T ss_dssp EEESSC---------------TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT----------TTEEEEE
T ss_pred EEEecC---------------CCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC----------CCEEEEE
Confidence 777631 223221 1 1111 1223468999999988655432 2568888
Q ss_pred eCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003363 410 DWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (826)
Q Consensus 410 d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt 484 (826)
|+...... ...+..+.. . ..+..++|+|||+.|++.....+...+|.+|..+|+.+++.
T Consensus 259 d~~~~~~~------~~~~~~~~~--~--------~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~ 317 (343)
T 1ri6_A 259 SVSEDGSV------LSKEGFQPT--E--------TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKG 317 (343)
T ss_dssp EECTTSCC------EEEEEEEEC--S--------SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEE
T ss_pred EEcCCCCc------eEEeeeecC--C--------CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcc
Confidence 87632110 001111111 0 12447789999998877665567888999999888876653
|
| >1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase directed evolution; 1.50A {Bacillus subtilis} SCOP: c.69.1.1 PDB: 1c7j_A 1c7i_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-15 Score=168.07 Aligned_cols=224 Identities=15% Similarity=0.151 Sum_probs=141.6
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cchHHHHHHHHCC-cEEEEECCC-CCCCCchhhhhcCCCCCCcchH
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVG-YSLLIVNYR-GSLGFGEEALQSLPGKVGSQDV 652 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~~~~~~~la~~G-~~Vl~~d~r-G~~g~G~~~~~~~~~~~~~~~~ 652 (826)
+...+|.|.. ..++.|+||++|||++..... ........|+++| ++|+.+||| |..|++...... ....+...+
T Consensus 83 L~l~v~~P~~--~~~~~PviV~iHGGg~~~g~~~~~~~~~~~la~~g~~vvv~~nYRlg~~Gf~~~~~~~-~~~~~n~gl 159 (489)
T 1qe3_A 83 LYVNVFAPDT--PSQNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFGFLHLSSFD-EAYSDNLGL 159 (489)
T ss_dssp CEEEEEEECS--SCCSEEEEEEECCSTTTSCCTTSGGGCCHHHHHHHTCEEEEECCCCHHHHSCCCTTTC-TTSCSCHHH
T ss_pred CEEEEEeCCC--CCCCCCEEEEECCCccccCCCCCcccCHHHHHhcCCEEEEecCccCcccccCcccccc-ccCCCCcch
Confidence 4556788874 234589999999988654332 2222355666665 999999999 333343321100 112334458
Q ss_pred HHHHHHHHHHHHcC---CCCCCcEEEEEecchHHHHHHHHHhC--CCceeEEEecCCccchhhhccCCCCCCchhhhhcc
Q 003363 653 NDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 727 (826)
Q Consensus 653 ~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~ 727 (826)
.|+.++++|+.++. .+|++||+|+|+|+||++++.++... +++|+++|+.+|..++......... ...+....+
T Consensus 160 ~D~~~al~wv~~~i~~fggDp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~~~~~~-~~~~~~~~g 238 (489)
T 1qe3_A 160 LDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASRTMTKEQAAST-AAAFLQVLG 238 (489)
T ss_dssp HHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCCCCBCHHHHHHH-HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCcceeEEEEechHHHHHHHHHhCccccchHHHHHHhCCCCCCCCHHHHHHH-HHHHHHHcC
Confidence 89999999998862 36999999999999999998887653 5789999999997633211100000 001112222
Q ss_pred Cc--CCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCC
Q 003363 728 SK--GKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 805 (826)
Q Consensus 728 ~~--~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 805 (826)
.. ...++...+..+ .+...+++........|.+++++..|..+.+++..+++++.+..++++.+-..++++|.+.
T Consensus 239 ~~~~~~~~Lr~~~~~~---l~~~~~~~~~~~~~~~~~~~~~p~~D~~~~~~~~~~~~~~~~~~~vp~~~g~~~~Eg~~~~ 315 (489)
T 1qe3_A 239 INESQLDRLHTVAAED---LLKAADQLRIAEKENIFQLFFQPALDPKTLPEEPEKSIAEGAASGIPLLIGTTRDEGYLFF 315 (489)
T ss_dssp CCTTCGGGGGTSCHHH---HHHHHHHHHTSTTCCTTSCSSCCBCBTTTBCSCHHHHHHTTTTTTCCEEEEEETTGGGGTC
T ss_pred CCHHHHHHHHcCCHHH---HHHHHHHhhhccccccCCccceEeECCeecCcCHHHHHhcCCCCCCCEEEeeecchhHhhc
Confidence 21 122222222111 1111122221123345678889999999999999999988888899999999999999876
Q ss_pred C
Q 003363 806 R 806 (826)
Q Consensus 806 ~ 806 (826)
.
T Consensus 316 ~ 316 (489)
T 1qe3_A 316 T 316 (489)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-14 Score=150.74 Aligned_cols=213 Identities=11% Similarity=0.028 Sum_probs=119.2
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
..|.||++||.+.. ...|...+..|++ ||.|+++|+|| +|.+... .....++++.+.+..+++.- .+.
T Consensus 50 ~~~~lvllHG~~~~--~~~~~~l~~~L~~-~~~v~~~D~~G---~G~S~~~-----~~~~~~~~~a~~~~~~l~~~-~~~ 117 (280)
T 3qmv_A 50 APLRLVCFPYAGGT--VSAFRGWQERLGD-EVAVVPVQLPG---RGLRLRE-----RPYDTMEPLAEAVADALEEH-RLT 117 (280)
T ss_dssp CSEEEEEECCTTCC--GGGGTTHHHHHCT-TEEEEECCCTT---SGGGTTS-----CCCCSHHHHHHHHHHHHHHT-TCS
T ss_pred CCceEEEECCCCCC--hHHHHHHHHhcCC-CceEEEEeCCC---CCCCCCC-----CCCCCHHHHHHHHHHHHHHh-CCC
Confidence 34889999997655 5567778888876 99999999999 5554321 12234555555544444432 145
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCcee----EEEecCCccchhhhcc-CCCCCCchh---hhhccCcCCc-----cCCCC
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFV----AAAARNPLCNLALMVG-TTDIPDWCY---VESYGSKGKD-----SFTES 737 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~----a~v~~~p~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~-----~~~~~ 737 (826)
+++.|+|||+||.+++.+|.++|+++. .+++.+.......... ......-.+ ...++..... .+...
T Consensus 118 ~~~~lvG~S~Gg~va~~~a~~~p~~~~~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (280)
T 3qmv_A 118 HDYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGLDDADTLGAAYFDR 197 (280)
T ss_dssp SSEEEEEETHHHHHHHHHHHHHHHTTCCCCSCEEEESCCCGGGCSCCCGGGSCHHHHHHHHHHHTCCC---------CCT
T ss_pred CCEEEEEeCHhHHHHHHHHHHHHHcCCCCceEEEEECCCCCCCcCcccccccCHHHHHHHHHHhCCCChhhhcCHHHHHH
Confidence 789999999999999999999887665 5555443221100000 000000000 0000000000 00000
Q ss_pred CCh---hhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCC-CCCHHHH
Q 003363 738 PSV---EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER-PQSDFES 813 (826)
Q Consensus 738 ~~~---~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~-~~~~~~~ 813 (826)
... ..........+ ..+.++++|+|+++|++|..++++.+..+.+.+. ...+++++++ ||.... .+...++
T Consensus 198 ~~~~~~~~~~~~~~~~~-~~~~~i~~P~l~i~G~~D~~~~~~~~~~~~~~~~---~~~~~~~~~g-gH~~~~~~~~~~~~ 272 (280)
T 3qmv_A 198 RLPVLRADLRACERYDW-HPRPPLDCPTTAFSAAADPIATPEMVEAWRPYTT---GSFLRRHLPG-NHFFLNGGPSRDRL 272 (280)
T ss_dssp THHHHHHHHHHHHTCCC-CCCCCBCSCEEEEEEEECSSSCHHHHHTTGGGBS---SCEEEEEEEE-ETTGGGSSHHHHHH
T ss_pred HHHHHHHHHHHHHhccc-cCCCceecCeEEEEecCCCCcChHHHHHHHHhcC---CceEEEEecC-CCeEEcCchhHHHH
Confidence 000 01111111111 2246789999999999999999888776655543 2467888875 887654 2333334
Q ss_pred HHHHHHH
Q 003363 814 FLNIGLW 820 (826)
Q Consensus 814 ~~~i~~w 820 (826)
.+.|.+|
T Consensus 273 ~~~i~~~ 279 (280)
T 3qmv_A 273 LAHLGTE 279 (280)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 4444433
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.51 E-value=8.2e-13 Score=140.87 Aligned_cols=275 Identities=13% Similarity=0.065 Sum_probs=169.8
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (826)
++|||+.++... ...+.++++..........+.. .......+...+|+|||+.|+.....+ .+.
T Consensus 59 ~~~~~~~l~~~~----------dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~ 122 (337)
T 1gxr_A 59 ISNPTRHVYTGG----------KGCVKVWDISHPGNKSPVSQLD-CLNRDNYIRSCKLLPDGCTLIVGGEAS-----TLS 122 (337)
T ss_dssp ECSSSSEEEEEC----------BSEEEEEETTSTTCCSCSEEEE-CSCTTSBEEEEEECTTSSEEEEEESSS-----EEE
T ss_pred EecCCcEEEEcC----------CCeEEEEECCCCCceeeeeccc-ccCCCCcEEEEEEcCCCCEEEEEcCCC-----cEE
Confidence 479998887642 2456666664432211111111 000114588999999999999876543 455
Q ss_pred Eec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeec
Q 003363 184 LWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 261 (826)
Q Consensus 184 i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (826)
+|+ .++........ ...+.+ ..+.|+||++.|+..+.+.... .|+............+........|.+
T Consensus 123 ~~d~~~~~~~~~~~~~-~~~~~i------~~~~~~~~~~~l~~~~~dg~v~--~~d~~~~~~~~~~~~~~~~i~~~~~~~ 193 (337)
T 1gxr_A 123 IWDLAAPTPRIKAELT-SSAPAC------YALAISPDSKVCFSCCSDGNIA--VWDLHNQTLVRQFQGHTDGASCIDISN 193 (337)
T ss_dssp EEECCCC--EEEEEEE-CSSSCE------EEEEECTTSSEEEEEETTSCEE--EEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EEECCCCCcceeeecc-cCCCce------EEEEECCCCCEEEEEeCCCcEE--EEeCCCCceeeeeecccCceEEEEECC
Confidence 662 33322222221 111222 7899999999999887765432 233222211122223344445667888
Q ss_pred CCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEE
Q 003363 262 DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 341 (826)
Q Consensus 262 d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d 341 (826)
+....+++.....|++||+.+++.... ......+..++|+|||+. |+..+ ....|+.+|
T Consensus 194 ~~~~l~~~~~dg~i~~~d~~~~~~~~~--~~~~~~v~~~~~s~~~~~----l~~~~---------------~~~~i~~~~ 252 (337)
T 1gxr_A 194 DGTKLWTGGLDNTVRSWDLREGRQLQQ--HDFTSQIFSLGYCPTGEW----LAVGM---------------ESSNVEVLH 252 (337)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEECTTSSE----EEEEE---------------TTSCEEEEE
T ss_pred CCCEEEEEecCCcEEEEECCCCceEee--ecCCCceEEEEECCCCCE----EEEEc---------------CCCcEEEEE
Confidence 754555666678999999998876655 334456778999999997 77665 234788999
Q ss_pred cccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCccc
Q 003363 342 VSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE 421 (826)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~ 421 (826)
+ .+++...+..+...+....|+|||++|+..+.+ ..|++||+.+++......
T Consensus 253 ~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~~~~~~~~~~~~~~~ 304 (337)
T 1gxr_A 253 V-----------------NKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD-----------NLLNAWRTPYGASIFQSK 304 (337)
T ss_dssp T-----------------TSSCEEEECCCSSCEEEEEECTTSSEEEEEETT-----------SEEEEEETTTCCEEEEEE
T ss_pred C-----------------CCCCeEEEcCCccceeEEEECCCCCEEEEecCC-----------CcEEEEECCCCeEEEEec
Confidence 8 566667777777788899999999988766643 468999988765421100
Q ss_pred ceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003363 422 KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (826)
Q Consensus 422 ~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~v 473 (826)
....+..+.|+|||+.|+ +...++...+|.+
T Consensus 305 --------------------~~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 305 --------------------ESSSVLSCDISVDDKYIV-TGSGDKKATVYEV 335 (337)
T ss_dssp --------------------CSSCEEEEEECTTSCEEE-EEETTSCEEEEEE
T ss_pred --------------------CCCcEEEEEECCCCCEEE-EecCCCeEEEEEE
Confidence 011334678999998664 4455666666654
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-12 Score=142.35 Aligned_cols=253 Identities=15% Similarity=0.130 Sum_probs=147.9
Q ss_pred CCcceEEEEEe--echhhcccceeEEEEEEeecCCCCccceeecCCc---ceecccEEEEeCCCCCeEEEEecCCCCCCe
Q 003363 106 GNGTQAMFSIS--QPNLLANKRKKFMLSTVISKENENSVTFQWAPFP---VEMTGASAVVPSPSGSKLLVVRNPENESPI 180 (826)
Q Consensus 106 ~dg~~v~~~~~--~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~---~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 180 (826)
+++..++.... ...+..+.....+.++.+.........+....+- .....+...+|||||++||..+... ..
T Consensus 81 ~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~---d~ 157 (365)
T 4h5i_A 81 ASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKV---PA 157 (365)
T ss_dssp EETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCS---SC
T ss_pred eCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCC---CC
Confidence 45554443322 2234555556667777665544332222211110 0002356789999999998876432 23
Q ss_pred EEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcce
Q 003363 181 QFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 258 (826)
Q Consensus 181 ~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (826)
.+.+|+ .++....... ++.| ..++|||||+.|+..+.
T Consensus 158 ~i~iwd~~~~~~~~~~~~----~~~V------~~v~fspdg~~l~s~s~------------------------------- 196 (365)
T 4h5i_A 158 IMRIIDPSDLTEKFEIET----RGEV------KDLHFSTDGKVVAYITG------------------------------- 196 (365)
T ss_dssp EEEEEETTTTEEEEEEEC----SSCC------CEEEECTTSSEEEEECS-------------------------------
T ss_pred EEEEeECCCCcEEEEeCC----CCce------EEEEEccCCceEEeccc-------------------------------
Confidence 677884 3333333322 2333 79999999999998743
Q ss_pred eecCCCccCCCccCceEEEEEccCCceEe-ccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCce
Q 003363 259 WEEDWGETYAGKRQPSLFVININSGEVQA-VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCAL 337 (826)
Q Consensus 259 ~~~d~g~~~~~~~~~~l~v~d~~~g~~~~-l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l 337 (826)
..+.+|+..+++... .........+..++|+|||+. ++..+..... ...+
T Consensus 197 --------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~----l~~~s~d~~~-----------~~~i 247 (365)
T 4h5i_A 197 --------------SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTV----LIAASLKKGK-----------GIVL 247 (365)
T ss_dssp --------------SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEE----EEEEEESSSC-----------CEEE
T ss_pred --------------eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCE----EEEEecCCcc-----------eeEE
Confidence 246677776665432 211233446778999999998 8777633221 1245
Q ss_pred EEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCC
Q 003363 338 YAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (826)
Q Consensus 338 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~ 417 (826)
+.+++.... ........+..+...+...+|||||++||..+.+ ..|.+||+.+++..
T Consensus 248 ~~~~~~~~~------------~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D-----------~~V~iwd~~~~~~~ 304 (365)
T 4h5i_A 248 TKISIKSGN------------TSVLRSKQVTNRFKGITSMDVDMKGELAVLASND-----------NSIALVKLKDLSMS 304 (365)
T ss_dssp EEEEEETTE------------EEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT-----------SCEEEEETTTTEEE
T ss_pred eecccccce------------ecceeeeeecCCCCCeEeEEECCCCCceEEEcCC-----------CEEEEEECCCCcEE
Confidence 666652100 0001123455666678889999999999877765 35899998875542
Q ss_pred Cc-ccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003363 418 SS-LEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (826)
Q Consensus 418 ~~-~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vd 474 (826)
.. ..+ +...+..++|||||++| ++.+.++..+||.+.
T Consensus 305 ~~~~~g-------------------H~~~V~~v~fSpdg~~l-aS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 305 KIFKQA-------------------HSFAITEVTISPDSTYV-ASVSAANTIHIIKLP 342 (365)
T ss_dssp EEETTS-------------------SSSCEEEEEECTTSCEE-EEEETTSEEEEEECC
T ss_pred EEecCc-------------------ccCCEEEEEECCCCCEE-EEEeCCCeEEEEEcC
Confidence 11 111 12245578999999855 566667777777664
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-12 Score=145.07 Aligned_cols=265 Identities=12% Similarity=0.083 Sum_probs=161.5
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
..+...+|||||++|+.....+ .+.+| ..+.....+. ...+.| ..+.|+|||+.|+..+.+....
T Consensus 109 ~~v~~~~~s~~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~---~~~~~v------~~~~~~~~~~~l~~~~~d~~i~ 174 (425)
T 1r5m_A 109 NQVTCLAWSHDGNSIVTGVENG-----ELRLWNKTGALLNVLN---FHRAPI------VSVKWNKDGTHIISMDVENVTI 174 (425)
T ss_dssp BCEEEEEECTTSSEEEEEETTS-----CEEEEETTSCEEEEEC---CCCSCE------EEEEECTTSSEEEEEETTCCEE
T ss_pred CceEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCeeeecc---CCCccE------EEEEECCCCCEEEEEecCCeEE
Confidence 3688999999999999876543 35566 3343333332 122222 7899999999999887765432
Q ss_pred CCCccCCCCCCCCCCccCC---------------CCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCcc
Q 003363 233 KPTFSLGSTKGGSSDKDCN---------------SWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSV 297 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~ 297 (826)
.|+.............. .......|.++ +..+++.....|++||+.+++..... ......+
T Consensus 175 --iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~-~~~~~~i 250 (425)
T 1r5m_A 175 --LWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKL-IGHHGPI 250 (425)
T ss_dssp --EEETTTTEEEEEECCC---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEE-CCCSSCE
T ss_pred --EEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeee-ccCCCce
Confidence 22211111100001111 11445567766 56666667889999999987654331 2334567
Q ss_pred ceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCC-cceecCCCCccccC
Q 003363 298 GQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFF 376 (826)
Q Consensus 298 ~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~Lt~~~~~~~~ 376 (826)
..++|+||++. |+..+ .+..|+++|+ ..+ ....+..+...+..
T Consensus 251 ~~~~~~~~~~~----l~~~~---------------~d~~i~i~d~-----------------~~~~~~~~~~~~~~~i~~ 294 (425)
T 1r5m_A 251 SVLEFNDTNKL----LLSAS---------------DDGTLRIWHG-----------------GNGNSQNCFYGHSQSIVS 294 (425)
T ss_dssp EEEEEETTTTE----EEEEE---------------TTSCEEEECS-----------------SSBSCSEEECCCSSCEEE
T ss_pred EEEEECCCCCE----EEEEc---------------CCCEEEEEEC-----------------CCCccceEecCCCccEEE
Confidence 88999999997 77665 3347888887 333 34555556677889
Q ss_pred ceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCC
Q 003363 377 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGC 456 (826)
Q Consensus 377 p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~ 456 (826)
..|+||| .|+..+.+ ..|++||+.++..... ... ....+..+.|+|||+
T Consensus 295 ~~~~~~~-~l~~~~~d-----------~~i~i~d~~~~~~~~~----------~~~---------~~~~i~~~~~s~~~~ 343 (425)
T 1r5m_A 295 ASWVGDD-KVISCSMD-----------GSVRLWSLKQNTLLAL----------SIV---------DGVPIFAGRISQDGQ 343 (425)
T ss_dssp EEEETTT-EEEEEETT-----------SEEEEEETTTTEEEEE----------EEC---------TTCCEEEEEECTTSS
T ss_pred EEECCCC-EEEEEeCC-----------CcEEEEECCCCcEeEe----------ccc---------CCccEEEEEEcCCCC
Confidence 9999999 55555433 4699999877543211 100 011334678999998
Q ss_pred EEEEEEEeCCeEEEEEEECCCCc---------------------EEEecCCCC--CeeeEEEeecCCEEEEEE
Q 003363 457 TMLLSSIWGSSQVIISVNVSSGE---------------------LLRITPAES--NFSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 457 ~l~~~~~~~~~~~l~~vdl~tg~---------------------~~~lt~~~~--~~~~~~~s~dg~~l~~~~ 506 (826)
.|+.. ..++. |..+|+.+++ +..+..... .+....|+++++.|+...
T Consensus 344 ~l~~~-~~dg~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 413 (425)
T 1r5m_A 344 KYAVA-FMDGQ--VNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAY 413 (425)
T ss_dssp EEEEE-ETTSC--EEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEE
T ss_pred EEEEE-ECCCe--EEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEe
Confidence 66544 44444 5555666655 333433322 566677888888665544
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-11 Score=134.28 Aligned_cols=270 Identities=13% Similarity=0.067 Sum_probs=150.0
Q ss_pred eeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCC--CCCeEEEEec-CCceeEEEecCCCccc
Q 003363 126 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN--ESPIQFELWS-QSQLEKEFHVPQTVHG 202 (826)
Q Consensus 126 ~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~--~~~~~~~i~~-~~~~~~~~~~~~~~~g 202 (826)
...++++.++...++..+++.. ........+|||||++|++....++ +.-.+|.+.. ++..+.+........
T Consensus 26 ~~~i~~~~~d~~~g~~~~~~~~----~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~- 100 (361)
T 3scy_A 26 SKGIYTFRFNEETGESLPLSDA----EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGA- 100 (361)
T ss_dssp CCEEEEEEEETTTCCEEEEEEE----ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSS-
T ss_pred CCCEEEEEEeCCCCCEEEeecc----cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCC-
Confidence 3466677676655555444332 1245677899999999988876522 3334455553 366665554331110
Q ss_pred cccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccC
Q 003363 203 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS 282 (826)
Q Consensus 203 ~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~ 282 (826)
....+++ ||+.|+..... ...|.+|++..
T Consensus 101 ------~p~~~~~--dg~~l~~~~~~-------------------------------------------~~~v~~~~~~~ 129 (361)
T 3scy_A 101 ------DPCYLTT--NGKNIVTANYS-------------------------------------------GGSITVFPIGQ 129 (361)
T ss_dssp ------CEEEEEE--CSSEEEEEETT-------------------------------------------TTEEEEEEBCT
T ss_pred ------CcEEEEE--CCCEEEEEECC-------------------------------------------CCEEEEEEeCC
Confidence 0024445 99887765321 25677777753
Q ss_pred -CceEecc---CCCC---------CCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchh
Q 003363 283 -GEVQAVK---GIPK---------SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 349 (826)
Q Consensus 283 -g~~~~l~---~~~~---------~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 349 (826)
+.+..+. ...+ ...+..++|+|||+. |++... ....|++++++.
T Consensus 130 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~----l~~~~~--------------~~~~v~v~~~~~----- 186 (361)
T 3scy_A 130 DGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY----LLADDL--------------GTDQIHKFNINP----- 186 (361)
T ss_dssp TSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE----EEEEET--------------TTTEEEEEEECT-----
T ss_pred CCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE----EEEEeC--------------CCCEEEEEEEcC-----
Confidence 3322220 0000 112356899999997 776652 122566666521
Q ss_pred hhhhhhcCCCCCC----c-c-------eecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCC
Q 003363 350 SELELKESSSEDL----P-V-------VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (826)
Q Consensus 350 ~~~~~~~~~~~~~----~-~-------~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~ 417 (826)
.++ + . ............+.|||||++|+...... ..|.+||+.++...
T Consensus 187 ----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~----------~~v~v~~~~~g~~~ 246 (361)
T 3scy_A 187 ----------NANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG----------GTVIAFRYADGMLD 246 (361)
T ss_dssp ----------TCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT----------CEEEEEEEETTEEE
T ss_pred ----------CCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC----------CeEEEEEecCCceE
Confidence 222 1 1 11122233456789999999877665332 46888887754321
Q ss_pred CcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEe-CCeEEEEEEECCCCcEEEecC--CCCCeeeEE
Q 003363 418 SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGELLRITP--AESNFSWSL 494 (826)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~-~~~~~l~~vdl~tg~~~~lt~--~~~~~~~~~ 494 (826)
. +..+...+. .+. ....++|+|||++||++... .+...+|.++..+|+.+.+.. .........
T Consensus 247 ~-------~~~~~~~~~--~~~-----~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~ 312 (361)
T 3scy_A 247 E-------IQTVAADTV--NAQ-----GSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFI 312 (361)
T ss_dssp E-------EEEEESCSS--CCC-----CEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEE
T ss_pred E-------eEEEecCCC--CCC-----CcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEE
Confidence 1 111111110 010 12367899999988776555 566778888777887665432 112234467
Q ss_pred EeecCCEEEEEEeC
Q 003363 495 LTLDGDNIIAVSSS 508 (826)
Q Consensus 495 ~s~dg~~l~~~~s~ 508 (826)
|++||+.|++....
T Consensus 313 ~spdg~~l~~~~~~ 326 (361)
T 3scy_A 313 ITPNGKYLLVACRD 326 (361)
T ss_dssp ECTTSCEEEEEETT
T ss_pred ECCCCCEEEEEECC
Confidence 89999987766543
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.2e-12 Score=134.84 Aligned_cols=281 Identities=11% Similarity=0.013 Sum_probs=174.9
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003363 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (826)
Q Consensus 103 ~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (826)
.++|||+.++... ....+.++++.. +.....+.... ..+...+|+|||++|+.....+ .+
T Consensus 39 ~~s~~~~~l~~~~---------~dg~i~vwd~~~-~~~~~~~~~h~-----~~v~~~~~~~~~~~l~s~~~dg-----~i 98 (369)
T 3zwl_B 39 KYNKEGDLLFSCS---------KDSSASVWYSLN-GERLGTLDGHT-----GTIWSIDVDCFTKYCVTGSADY-----SI 98 (369)
T ss_dssp EECTTSCEEEEEE---------SSSCEEEEETTT-CCEEEEECCCS-----SCEEEEEECTTSSEEEEEETTT-----EE
T ss_pred EEcCCCCEEEEEe---------CCCEEEEEeCCC-chhhhhhhhcC-----CcEEEEEEcCCCCEEEEEeCCC-----eE
Confidence 3489998876542 233566666532 22223333222 4588999999999999876543 46
Q ss_pred EEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceee
Q 003363 183 ELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (826)
Q Consensus 183 ~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (826)
.+| ..++..........+ ..+.|+|||+.|+....+..
T Consensus 99 ~iwd~~~~~~~~~~~~~~~v----------~~~~~~~~~~~l~~~~~~~~------------------------------ 138 (369)
T 3zwl_B 99 KLWDVSNGQCVATWKSPVPV----------KRVEFSPCGNYFLAILDNVM------------------------------ 138 (369)
T ss_dssp EEEETTTCCEEEEEECSSCE----------EEEEECTTSSEEEEEECCBT------------------------------
T ss_pred EEEECCCCcEEEEeecCCCe----------EEEEEccCCCEEEEecCCcc------------------------------
Confidence 666 344444444433333 78999999999998765410
Q ss_pred cCCCccCCCccCceEEEEEccCCce------------EeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeee
Q 003363 261 EDWGETYAGKRQPSLFVININSGEV------------QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK 328 (826)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~------------~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~ 328 (826)
.....|.+||+.++.. ..+........+..++|+|||+. |+..+
T Consensus 139 ---------~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~----------- 194 (369)
T 3zwl_B 139 ---------KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKY----IIAGH----------- 194 (369)
T ss_dssp ---------TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCE----EEEEE-----------
T ss_pred ---------CCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCE----EEEEc-----------
Confidence 0235688888765532 12211222226778899999997 76655
Q ss_pred eeccCCCceEEEEcccccchhhhhhhhcCCCC-CCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEE
Q 003363 329 YCYNRPCALYAVRVSLYKSEASELELKESSSE-DLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLH 407 (826)
Q Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~ 407 (826)
.+..|+++|+. . ......+..+...+....|+|||++|+..+.+ ..|+
T Consensus 195 ----~dg~i~i~d~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~ 243 (369)
T 3zwl_B 195 ----KDGKISKYDVS----------------NNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD-----------TNSF 243 (369)
T ss_dssp ----TTSEEEEEETT----------------TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT-----------SEEE
T ss_pred ----CCCEEEEEECC----------------CCcEeEEEEecCCCceeEEEECCCCCEEEEecCC-----------ceEE
Confidence 33478899982 2 23345566667778899999999998877644 4699
Q ss_pred EEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCC-----------eEEEEEEECC
Q 003363 408 RIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS-----------SQVIISVNVS 476 (826)
Q Consensus 408 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~-----------~~~l~~vdl~ 476 (826)
+||+.++....... . ...+..+.|+|+++.+++....++ ...+..+|+.
T Consensus 244 v~d~~~~~~~~~~~----------~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 303 (369)
T 3zwl_B 244 LVDVSTLQVLKKYE----------T----------DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI 303 (369)
T ss_dssp EEETTTCCEEEEEE----------C----------SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETT
T ss_pred EEECCCCceeeeec----------C----------CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC
Confidence 99988755321110 0 012346789999998876654321 2267788888
Q ss_pred CCcEEEecC-CCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003363 477 SGELLRITP-AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (826)
Q Consensus 477 tg~~~~lt~-~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 522 (826)
+++...... ....+....|+++++.++....+ ..|.+.++..
T Consensus 304 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~v~iw~~~~ 346 (369)
T 3zwl_B 304 FEEEIGRVQGHFGPLNTVAISPQGTSYASGGED----GFIRLHHFEK 346 (369)
T ss_dssp TCCEEEEEECCSSCEEEEEECTTSSEEEEEETT----SEEEEEEECH
T ss_pred CCcchhheecccCcEEEEEECCCCCEEEEEcCC----CeEEEEECcc
Confidence 877665443 34456667889988866654432 2466666543
|
| >4i19_A Epoxide hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.15A {Streptomyces carzinostaticus subsp} | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-13 Score=148.80 Aligned_cols=121 Identities=16% Similarity=0.205 Sum_probs=92.8
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHC---------CcEEEEECCCCCCCCchhhhh
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV---------GYSLLIVNYRGSLGFGEEALQ 641 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~---------G~~Vl~~d~rG~~g~G~~~~~ 641 (826)
-+|..++...+.+. .+..|.||++||.+++ ...|...+..|++. ||.|+++|+|| +|.+...
T Consensus 75 i~g~~i~~~~~~~~----~~~~~plll~HG~~~s--~~~~~~~~~~L~~~~~~~~~~~~~~~vi~~dl~G---~G~S~~~ 145 (388)
T 4i19_A 75 IDGATIHFLHVRSP----EPDATPMVITHGWPGT--PVEFLDIIGPLTDPRAHGGDPADAFHLVIPSLPG---FGLSGPL 145 (388)
T ss_dssp ETTEEEEEEEECCS----STTCEEEEEECCTTCC--GGGGHHHHHHHHCGGGGTSCGGGCEEEEEECCTT---SGGGCCC
T ss_pred ECCeEEEEEEccCC----CCCCCeEEEECCCCCC--HHHHHHHHHHHhCcccccCCCCCCeEEEEEcCCC---CCCCCCC
Confidence 36788887776654 2346789999998765 55788888888776 99999999999 5554321
Q ss_pred cCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCcc
Q 003363 642 SLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (826)
Q Consensus 642 ~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 706 (826)
. .......++.+.+..+++. ++.+++.++|||+||.+++.++.++|++++++++.+|..
T Consensus 146 ~----~~~~~~~~~a~~~~~l~~~--lg~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 204 (388)
T 4i19_A 146 K----SAGWELGRIAMAWSKLMAS--LGYERYIAQGGDIGAFTSLLLGAIDPSHLAGIHVNLLQT 204 (388)
T ss_dssp S----SCCCCHHHHHHHHHHHHHH--TTCSSEEEEESTHHHHHHHHHHHHCGGGEEEEEESSCCC
T ss_pred C----CCCCCHHHHHHHHHHHHHH--cCCCcEEEEeccHHHHHHHHHHHhChhhceEEEEecCCC
Confidence 1 1133577777777777766 345789999999999999999999999999999998643
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-11 Score=132.09 Aligned_cols=245 Identities=16% Similarity=0.125 Sum_probs=138.1
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
.+...+|||||++|++....+ +.-.+|.+. .++..+.+...... +.+ ..++|||||+.|++....
T Consensus 39 ~~~~~~~spdg~~l~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~s~dg~~l~~~~~~----- 104 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRPE-FRVLAYRIAPDDGALTFAAESALP--GSL------THISTDHQGQFVFVGSYN----- 104 (343)
T ss_dssp CCCCEEECTTSSEEEEEETTT-TEEEEEEECTTTCCEEEEEEEECS--SCC------SEEEECTTSSEEEEEETT-----
T ss_pred CCceEEECCCCCEEEEeecCC-CeEEEEEecCCCCceeeccccccC--CCC------cEEEEcCCCCEEEEEecC-----
Confidence 467789999999998876642 322333343 24454444333211 112 689999999988876432
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCC---ceEeccCCCCCCccceEEEeeCCCCCc
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG---EVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g---~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
...|.+||+..+ +.... ......+..++|+|||+.
T Consensus 105 --------------------------------------~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~-- 142 (343)
T 1ri6_A 105 --------------------------------------AGNVSVTRLEDGLPVGVVDV--VEGLDGCHSANISPDNRT-- 142 (343)
T ss_dssp --------------------------------------TTEEEEEEEETTEEEEEEEE--ECCCTTBCCCEECTTSSE--
T ss_pred --------------------------------------CCeEEEEECCCCcccccccc--ccCCCCceEEEECCCCCE--
Confidence 256888888433 33332 233345678899999997
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCC-Cccee-----cCC-CCccccCceecCCC
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVN-----LTE-SISSAFFPRFSPDG 383 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~-----Lt~-~~~~~~~p~~SpDG 383 (826)
|++... ....|+++|+ .+ +.... +.. .........|+|||
T Consensus 143 --l~~~~~--------------~~~~v~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg 189 (343)
T 1ri6_A 143 --LWVPAL--------------KQDRICLFTV-----------------SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE 189 (343)
T ss_dssp --EEEEEG--------------GGTEEEEEEE-----------------CTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred --EEEecC--------------CCCEEEEEEe-----------------cCCCceeeecccccccCCCCCcceEEECCCC
Confidence 765541 1236888887 33 43332 221 22245567899999
Q ss_pred CEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEE
Q 003363 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 463 (826)
Q Consensus 384 ~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~ 463 (826)
++|++..... ..|.+||++....... .+..+...+. .+.+ ......++|+|||+.|+++..
T Consensus 190 ~~l~~~~~~~----------~~i~~~~~~~~~g~~~-----~~~~~~~~~~--~~~~--~~~~~~i~~s~dg~~l~v~~~ 250 (343)
T 1ri6_A 190 QYAYCVNELN----------SSVDVWELKDPHGNIE-----CVQTLDMMPE--NFSD--TRWAADIHITPDGRHLYACDR 250 (343)
T ss_dssp SEEEEEETTT----------TEEEEEESSCTTSCCE-----EEEEEECSCT--TCCS--CCCEEEEEECTTSSEEEEEET
T ss_pred CEEEEEeCCC----------CEEEEEEecCCCCcEE-----EEeeccccCc--cccc--cCCccceEECCCCCEEEEEec
Confidence 9887766432 4688888854211100 0000000000 0000 001225789999998877654
Q ss_pred eCCeEEEEEEECCCCcEEEec--CCCCCeeeEEEeecCCEEEEEEe
Q 003363 464 WGSSQVIISVNVSSGELLRIT--PAESNFSWSLLTLDGDNIIAVSS 507 (826)
Q Consensus 464 ~~~~~~l~~vdl~tg~~~~lt--~~~~~~~~~~~s~dg~~l~~~~s 507 (826)
..+...+|.++..+++.+.+. ..........|+++++.+++...
T Consensus 251 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 296 (343)
T 1ri6_A 251 TASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQ 296 (343)
T ss_dssp TTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECT
T ss_pred CCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecC
Confidence 445555555544366555442 12222445678999987776553
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.7e-12 Score=134.13 Aligned_cols=276 Identities=12% Similarity=0.056 Sum_probs=147.1
Q ss_pred eEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEec---CCCccc
Q 003363 127 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHV---PQTVHG 202 (826)
Q Consensus 127 ~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~---~~~~~g 202 (826)
+.++++.++..+++...++... .......++|||||+ |+++...+ +...++.+. .++..+.+... ....
T Consensus 16 ~~i~v~~~d~~tg~~~~~~~~~---~~~~p~~~a~spdg~-l~~~~~~~-~~~~v~~~~~~~g~~~~~~~~~~~~~~p-- 88 (347)
T 3hfq_A 16 QGIYQGTLDTTAKTLTNDGLLA---ATQNPTYLALSAKDC-LYSVDKED-DEGGIAAWQIDGQTAHKLNTVVAPGTPP-- 88 (347)
T ss_dssp CEEEEEEEETTTTEEEEEEEEE---ECSCCCCEEECTTCE-EEEEEEET-TEEEEEEEEEETTEEEEEEEEEEESCCC--
T ss_pred CCEEEEEEcCCCCeEEEeeeee---ccCCcceEEEccCCe-EEEEEecC-CCceEEEEEecCCcEEEeeeeecCCCCC--
Confidence 3455555655544443332211 113467789999999 76665431 222344433 45554444432 2222
Q ss_pred cccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEcc-
Q 003363 203 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ- 281 (826)
Q Consensus 203 ~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~- 281 (826)
..++|||||++|++.... ...+.+|+++
T Consensus 89 --------~~~a~spdg~~l~~~~~~-------------------------------------------~~~v~v~~~~~ 117 (347)
T 3hfq_A 89 --------AYVAVDEARQLVYSANYH-------------------------------------------KGTAEVMKIAA 117 (347)
T ss_dssp --------SEEEEETTTTEEEEEETT-------------------------------------------TTEEEEEEECT
T ss_pred --------EEEEECCCCCEEEEEeCC-------------------------------------------CCEEEEEEeCC
Confidence 688999999988876432 2467777774
Q ss_pred CCceEeccC--CCC--------CCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhh
Q 003363 282 SGEVQAVKG--IPK--------SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (826)
Q Consensus 282 ~g~~~~l~~--~~~--------~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (826)
+|+.+.+.. ..+ ...+..++|+|||+ +++... ....|+++++.
T Consensus 118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-----l~v~~~--------------~~~~v~~~~~~-------- 170 (347)
T 3hfq_A 118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-----LAVIDL--------------GSDKVYVYNVS-------- 170 (347)
T ss_dssp TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-----EEEEET--------------TTTEEEEEEEC--------
T ss_pred CCCeeecceeecCCCCCCccccCCCceEEEECCCCc-----EEEEeC--------------CCCEEEEEEEC--------
Confidence 455444320 111 11345689999999 444431 22368888872
Q ss_pred hhhhcCCCCCCcceecC---CC-CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC--CCCCCcccceee
Q 003363 352 LELKESSSEDLPVVNLT---ES-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT--NGNFSSLEKIVD 425 (826)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt---~~-~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~--~~~~~~~~~~~~ 425 (826)
.++....+. .. .......+|||||++|++..... ..+.+++++. +....
T Consensus 171 --------~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~----------~~v~v~~~~~~~g~~~~------- 225 (347)
T 3hfq_A 171 --------DAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS----------SQIASLKYDTQTGAFTQ------- 225 (347)
T ss_dssp --------TTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT----------TEEEEEEEETTTTEEEE-------
T ss_pred --------CCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC----------CEEEEEEecCCCCceEE-------
Confidence 234433221 11 12345679999999887665442 4566666553 22110
Q ss_pred eeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec---CCCCCeeeEEEeecCCEE
Q 003363 426 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT---PAESNFSWSLLTLDGDNI 502 (826)
Q Consensus 426 ~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt---~~~~~~~~~~~s~dg~~l 502 (826)
+..+...+. .+.+ ......++|+|||++||++....+...+|.++. +|+.+.+. ..........|++||+.|
T Consensus 226 ~~~~~~~~~--~~~~--~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~spdg~~l 300 (347)
T 3hfq_A 226 LGIVKTIPA--DYTA--HNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA-DGHLTLIQQISTEGDFPRDFDLDPTEAFV 300 (347)
T ss_dssp EEEEESSCT--TCCS--CCEEEEEEECTTSCEEEEEEETTTEEEEEEECG-GGCEEEEEEEECSSSCCCEEEECTTSSEE
T ss_pred eeeeeecCC--CCCC--CCcceeEEECCCCCEEEEEeCCCCEEEEEEECC-CCcEEEeEEEecCCCCcCeEEECCCCCEE
Confidence 111100010 0100 012335789999998887766556666666653 34444432 212223456789999987
Q ss_pred EEEEeCCCCCCeEEEEee
Q 003363 503 IAVSSSPVDVPQVKYGYF 520 (826)
Q Consensus 503 ~~~~s~~~~p~~l~~~~~ 520 (826)
++...... .+.+.++
T Consensus 301 ~v~~~~~~---~v~v~~~ 315 (347)
T 3hfq_A 301 VVVNQNTD---NATLYAR 315 (347)
T ss_dssp EEEETTTT---EEEEEEE
T ss_pred EEEEcCCC---cEEEEEE
Confidence 76655432 3555543
|
| >3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.9e-13 Score=140.24 Aligned_cols=119 Identities=14% Similarity=0.189 Sum_probs=79.6
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcc
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~ 650 (826)
.+|..++.... +..|.||++||.+.. ...|...+..|+ .+|.|+++|+||. |.+............
T Consensus 12 ~~~~~~~~~~~--------g~g~~~vllHG~~~~--~~~w~~~~~~l~-~~~~vi~~Dl~G~---G~s~~~~~~~~~~~~ 77 (291)
T 3qyj_A 12 TTEARINLVKA--------GHGAPLLLLHGYPQT--HVMWHKIAPLLA-NNFTVVATDLRGY---GDSSRPASVPHHINY 77 (291)
T ss_dssp CSSCEEEEEEE--------CCSSEEEEECCTTCC--GGGGTTTHHHHT-TTSEEEEECCTTS---TTSCCCCCCGGGGGG
T ss_pred cCCeEEEEEEc--------CCCCeEEEECCCCCC--HHHHHHHHHHHh-CCCEEEEEcCCCC---CCCCCCCCCcccccc
Confidence 35566654432 134679999998765 556777777774 5899999999994 443211111011123
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCc
Q 003363 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (826)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~ 705 (826)
..+++.+.+..+++. +..+++.|+||||||.+++.++.++|++++++|+.++.
T Consensus 78 ~~~~~~~~~~~~~~~--l~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 130 (291)
T 3qyj_A 78 SKRVMAQDQVEVMSK--LGYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDIA 130 (291)
T ss_dssp SHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCC
T ss_pred CHHHHHHHHHHHHHH--cCCCCEEEEEEChHHHHHHHHHHhCchhccEEEEECCC
Confidence 344444444444444 23468999999999999999999999999999988653
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-13 Score=146.44 Aligned_cols=288 Identities=9% Similarity=0.033 Sum_probs=165.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCC-CCeEEEEecCCceeEE---EecCCCccccccCCCcccceeecCCCCeEEEEeecC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENE-SPIQFELWSQSQLEKE---FHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~-~~~~~~i~~~~~~~~~---~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~ 229 (826)
..+..++|||||++||..+..... -.....+|........ .......++.| ..++|+||++.| ..+.++
T Consensus 43 ~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V------~~~~~s~d~~~l-~~s~dg 115 (357)
T 4g56_B 43 VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGV------TDVAWVSEKGIL-VASDSG 115 (357)
T ss_dssp SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCE------EEEEEETTTEEE-EEETTS
T ss_pred CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCE------EEEEEcCCCCEE-EEECCC
Confidence 358899999999999987653210 0122344522111110 00001111222 789999999755 455555
Q ss_pred CCCCCCccCCCCCCCC----CCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeC
Q 003363 230 SPSKPTFSLGSTKGGS----SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 305 (826)
Q Consensus 230 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPD 305 (826)
..+ .|+........ ....+...+....|.++....+++.....|.+||+.+++..... ......+..++|+|+
T Consensus 116 ~v~--lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~ 192 (357)
T 4g56_B 116 AVE--LWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY-NAHSSEVNCVAACPG 192 (357)
T ss_dssp CEE--EC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTT
T ss_pred EEE--EeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE-cCCCCCEEEEEEccC
Confidence 433 34322221111 11234555667788998555566667889999999998765441 233446778999999
Q ss_pred CCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc-eec--CCCCccccCceecCC
Q 003363 306 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNL--TESISSAFFPRFSPD 382 (826)
Q Consensus 306 g~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~L--t~~~~~~~~p~~SpD 382 (826)
++. ++.++. .+..|.++|+ .+++. ..+ ......+....|+||
T Consensus 193 ~~~----~~~s~~--------------~dg~v~~wd~-----------------~~~~~~~~~~~~~~~~~v~~v~~sp~ 237 (357)
T 4g56_B 193 KDT----IFLSCG--------------EDGRILLWDT-----------------RKPKPATRIDFCASDTIPTSVTWHPE 237 (357)
T ss_dssp CSS----CEEEEE--------------TTSCEEECCT-----------------TSSSCBCBCCCTTCCSCEEEEEECTT
T ss_pred CCc----eeeeec--------------cCCceEEEEC-----------------CCCceeeeeeeccccccccchhhhhc
Confidence 986 555442 2336888887 44432 222 233445678899999
Q ss_pred CCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEE
Q 003363 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 462 (826)
Q Consensus 383 G~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~ 462 (826)
+..++.....+ ..|++||+.+++....... ....+..++|+|||+.++++.
T Consensus 238 ~~~~la~g~~d----------~~i~~wd~~~~~~~~~~~~-------------------~~~~v~~l~~sp~~~~~lasg 288 (357)
T 4g56_B 238 KDDTFACGDET----------GNVSLVNIKNPDSAQTSAV-------------------HSQNITGLAYSYHSSPFLASI 288 (357)
T ss_dssp STTEEEEEESS----------SCEEEEESSCGGGCEEECC-------------------CSSCEEEEEECSSSSCCEEEE
T ss_pred ccceEEEeecc----------cceeEEECCCCcEeEEEec-------------------cceeEEEEEEcCCCCCEEEEE
Confidence 76554443332 4589999877554221111 111344678999997776766
Q ss_pred EeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEee-cCCEEEEEEeCCCCCCeEEEEeec
Q 003363 463 IWGSSQVIISVNVSSGELLRITPAESNFSWSLLTL-DGDNIIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 463 ~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~-dg~~l~~~~s~~~~p~~l~~~~~~ 521 (826)
..++. |..+|+.+++..+.......+....|+| +++.| ++++.... |.+-++.
T Consensus 289 s~D~~--i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l-~s~s~Dg~---v~iW~~~ 342 (357)
T 4g56_B 289 SEDCT--VAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKF-TTVGWDHK---VLHHHLP 342 (357)
T ss_dssp ETTSC--EEEECTTSCEEEEECCCSSCEEEEEECSSSTTEE-EEEETTSC---EEEEECC
T ss_pred eCCCE--EEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEE-EEEcCCCe---EEEEECC
Confidence 65555 4555888998877765555566678888 55544 44443332 5555543
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-12 Score=151.20 Aligned_cols=264 Identities=18% Similarity=0.155 Sum_probs=167.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
..+...+|+|||+.|+.....+ .+.+| ..++..+... +..+.| ..++|+|||+.|+..+.++..+
T Consensus 263 ~~v~~v~~~~d~~~l~~~~~d~-----~i~~w~~~~~~~~~~~---~h~~~v------~~~~~~~~~~~l~t~~~d~~i~ 328 (577)
T 2ymu_A 263 SSVNGVAFRPDGQTIASASDDK-----TVKLWNRNGQLLQTLT---GHSSSV------WGVAFSPDGQTIASASDDKTVK 328 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEETTSCEEEEEC---CCSSCE------EEEEECTTSSEEEEEETTSCEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCC-----EEEEEeCCCcEEEEEe---cCCCCe------EEEEECCCCCEEEEEeCCCeEE
Confidence 4578899999999998876543 45677 3444433332 222223 7899999999999888766443
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (826)
.|+... ........+........|.++.....++.....|.+||..+..+..+ ......+..++|+|||+.
T Consensus 329 --~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~--~~~~~~v~~~~~s~dg~~---- 399 (577)
T 2ymu_A 329 --LWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVRGVAFSPDGQT---- 399 (577)
T ss_dssp --EEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEE--ECCSSCEEEEEECTTSSC----
T ss_pred --EEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEe--cCCCCCeEEEEECCCCCE----
Confidence 232111 11111122223334566788854445555678899999766666666 344456788999999998
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
|+..+ .+..|+++|. .+.....+..+...+....||||+++|+..+.+
T Consensus 400 l~~~~---------------~d~~v~~~~~-----------------~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 400 IASAS---------------DDKTVKLWNR-----------------NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDD 447 (577)
T ss_dssp EEEEE---------------TTSEEEEECT-----------------TCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEe---------------CCCEEEEEeC-----------------CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCC
Confidence 88776 2236777886 455566777777778889999999998876654
Q ss_pred CCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003363 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (826)
..|.+||..+.....+. . +...+..++|+|||+.|+ +...++. |..
T Consensus 448 -----------~~v~~w~~~~~~~~~~~-----------~---------~~~~v~~~~~spd~~~la-s~~~d~~--i~i 493 (577)
T 2ymu_A 448 -----------KTVKLWNRNGQLLQTLT-----------G---------HSSSVRGVAFSPDGQTIA-SASDDKT--VKL 493 (577)
T ss_dssp -----------SEEEEEETTSCEEEEEE-----------C---------CSSCEEEEEECTTSCEEE-EEETTSE--EEE
T ss_pred -----------CEEEEEECCCCEEEEEc-----------C---------CCCCEEEEEEcCCCCEEE-EEeCCCE--EEE
Confidence 35888886432111110 0 111344678999999664 4444444 455
Q ss_pred EECCCCcEEEecCCCCCeeeEEEeecCCEEEEEE
Q 003363 473 VNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 473 vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ 506 (826)
+|..+..++.+......+....|+++++.|+...
T Consensus 494 w~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 527 (577)
T 2ymu_A 494 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 527 (577)
T ss_dssp EETTSCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred EcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEE
Confidence 5765555566665555666778999998765443
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.2e-12 Score=136.66 Aligned_cols=289 Identities=12% Similarity=0.152 Sum_probs=166.7
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
.+...+|||||+.||....++ .+.+|+ ++..........+..+.| ..++|||||+.||..+.+....
T Consensus 18 ~v~~l~~sp~g~~las~~~D~-----~i~iw~~~~~~~~~~~~~~~~h~~~v------~~~~~sp~g~~l~s~s~D~~v~ 86 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDR-----RIRIWGTEGDSWICKSVLSEGHQRTV------RKVAWSPCGNYLASASFDATTC 86 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTS-----CEEEEEEETTEEEEEEEECSSCSSCE------EEEEECTTSSEEEEEETTSCEE
T ss_pred cEEEEEECCCCCEEEEEcCCC-----eEEEEEcCCCcceeeeeeccccCCcE------EEEEECCCCCEEEEEECCCcEE
Confidence 478899999999999876543 456662 232222222223333344 7999999999999988776543
Q ss_pred CCCccCCCCC--CCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCce----EeccCCCCCCccceEEEeeCC
Q 003363 233 KPTFSLGSTK--GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV----QAVKGIPKSLSVGQVVWAPLN 306 (826)
Q Consensus 233 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~----~~l~~~~~~~~~~~~~wSPDg 306 (826)
. |+..... .......+...+....|.++....+++..+..|.+||+.++.. ..+ ......+..++|+|||
T Consensus 87 i--w~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~ 162 (345)
T 3fm0_A 87 I--WKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL--NSHTQDVKHVVWHPSQ 162 (345)
T ss_dssp E--EEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEE--CCCCSCEEEEEECSSS
T ss_pred E--EEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEe--cCcCCCeEEEEECCCC
Confidence 2 3211111 1112234555566778888855556666778999999987642 223 2334467789999999
Q ss_pred CCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc---ceecCCCCccccCceecCCC
Q 003363 307 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESISSAFFPRFSPDG 383 (826)
Q Consensus 307 ~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~Lt~~~~~~~~p~~SpDG 383 (826)
+. |+..+. +..|.++|+ ..+. ...+..+...+...+|||||
T Consensus 163 ~~----l~s~s~---------------d~~i~~w~~-----------------~~~~~~~~~~~~~h~~~v~~l~~sp~g 206 (345)
T 3fm0_A 163 EL----LASASY---------------DDTVKLYRE-----------------EEDDWVCCATLEGHESTVWSLAFDPSG 206 (345)
T ss_dssp SC----EEEEET---------------TSCEEEEEE-----------------ETTEEEEEEEECCCSSCEEEEEECTTS
T ss_pred CE----EEEEeC---------------CCcEEEEEe-----------------cCCCEEEEEEecCCCCceEEEEECCCC
Confidence 98 877762 235666666 2332 24566677778899999999
Q ss_pred CEEEEEeccCCCCCCCCcccceEEEEeCCCCCC-CCccc-ceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEE
Q 003363 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLE-KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 461 (826)
Q Consensus 384 ~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~-~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~ 461 (826)
++|+..+.+. .|.+||....+. ..+.. ........+. .+.+.....+..++|++++..| ++
T Consensus 207 ~~l~s~s~D~-----------~v~iW~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~h~~~v~~v~~~~~~~~l-~s 269 (345)
T 3fm0_A 207 QRLASCSDDR-----------TVRIWRQYLPGNEQGVACSGSDPSWKCIC-----TLSGFHSRTIYDIAWCQLTGAL-AT 269 (345)
T ss_dssp SEEEEEETTS-----------CEEEEEEECTTCTTCCCCC---CEEEEEE-----EECSSCSSCEEEEEECTTTCCE-EE
T ss_pred CEEEEEeCCC-----------eEEEeccccCCCCccceeeccCCccceeE-----EecCCCCCcEEEEEEecCCCEE-EE
Confidence 9998777552 366666432221 11110 0000000000 0011112234578899999855 45
Q ss_pred EEeCCeEEEEEEECCCCc----E---EEe-cCCCCCeeeEEEeecCCEEEEEEeCCCC
Q 003363 462 SIWGSSQVIISVNVSSGE----L---LRI-TPAESNFSWSLLTLDGDNIIAVSSSPVD 511 (826)
Q Consensus 462 ~~~~~~~~l~~vdl~tg~----~---~~l-t~~~~~~~~~~~s~dg~~l~~~~s~~~~ 511 (826)
...++...+|.++..... . ..+ ......+....|+|++..++++++....
T Consensus 270 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~ 327 (345)
T 3fm0_A 270 ACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGE 327 (345)
T ss_dssp EETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred EeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCc
Confidence 555666777766533211 1 111 1223345666788887655655554433
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-12 Score=149.85 Aligned_cols=186 Identities=10% Similarity=0.016 Sum_probs=113.8
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (826)
+||||++++-.. ....+.++++..... ....+.... ...+...+|||||++||...... +....+.
T Consensus 67 ~spdg~~lasg~---------~d~~v~lWd~~~~~~-~~~~~~~~~---~~~v~~v~fs~dg~~l~~~~~~~-~~~~~v~ 132 (611)
T 1nr0_A 67 TSPSGYYCASGD---------VHGNVRIWDTTQTTH-ILKTTIPVF---SGPVKDISWDSESKRIAAVGEGR-ERFGHVF 132 (611)
T ss_dssp ECTTSSEEEEEE---------TTSEEEEEESSSTTC-CEEEEEECS---SSCEEEEEECTTSCEEEEEECCS-SCSEEEE
T ss_pred ECCCCcEEEEEe---------CCCCEEEeECCCCcc-eeeEeeccc---CCceEEEEECCCCCEEEEEECCC-CceeEEE
Confidence 389998876432 244677777633221 111121111 14588999999999999876543 2233456
Q ss_pred EecCCceeEEEecCCCccccccCCCcccceeecCCCC-eEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecC
Q 003363 184 LWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 262 (826)
Q Consensus 184 i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~-~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 262 (826)
+|+.+.....+ .+..+.| ..++|+||++ .|+..+.+.... .|+....+.......+..++....|++|
T Consensus 133 ~wd~~~~~~~l---~gh~~~v------~~v~f~p~~~~~l~s~s~D~~v~--lwd~~~~~~~~~l~~H~~~V~~v~fspd 201 (611)
T 1nr0_A 133 LFDTGTSNGNL---TGQARAM------NSVDFKPSRPFRIISGSDDNTVA--IFEGPPFKFKSTFGEHTKFVHSVRYNPD 201 (611)
T ss_dssp ETTTCCBCBCC---CCCSSCE------EEEEECSSSSCEEEEEETTSCEE--EEETTTBEEEEEECCCSSCEEEEEECTT
T ss_pred EeeCCCCccee---cCCCCCc------eEEEECCCCCeEEEEEeCCCeEE--EEECCCCeEeeeeccccCceEEEEECCC
Confidence 67544332211 2222333 7999999998 477777766543 2332211222234456677778889999
Q ss_pred CCccCCCccCceEEEEEccCCceEeccCC------CCCCccceEEEeeCCCCCccEEEEEee
Q 003363 263 WGETYAGKRQPSLFVININSGEVQAVKGI------PKSLSVGQVVWAPLNEGLHQYLVFVGW 318 (826)
Q Consensus 263 ~g~~~~~~~~~~l~v~d~~~g~~~~l~~~------~~~~~~~~~~wSPDg~~~~~~lvf~~~ 318 (826)
.....++..+..|.+||+.+++....... .....+..++|+|||+. |+..+.
T Consensus 202 g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~----l~s~s~ 259 (611)
T 1nr0_A 202 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK----IASASA 259 (611)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE----EEEEET
T ss_pred CCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCE----EEEEeC
Confidence 54455666788999999988876543100 23346778999999998 877663
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-12 Score=136.79 Aligned_cols=269 Identities=13% Similarity=0.086 Sum_probs=164.9
Q ss_pred cccEEEEeCCC----CCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEee
Q 003363 154 TGASAVVPSPS----GSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 227 (826)
Q Consensus 154 ~~~~~~~~SPd----G~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~ 227 (826)
..+...+|+|+ |+.|+..+..+ .+.+|+ .+.......+ .+..+.| ..+.|+|+++.|+..+.
T Consensus 33 ~~V~~v~~~~~~~~~~~~l~tgs~D~-----~v~vW~~~~~~~~~~~~l-~gh~~~v------~~~~~~~~~~~l~s~s~ 100 (321)
T 3ow8_A 33 DAIWSVAWGTNKKENSETVVTGSLDD-----LVKVWKWRDERLDLQWSL-EGHQLGV------VSVDISHTLPIAASSSL 100 (321)
T ss_dssp SCEEEEEEC-------CEEEEEETTS-----CEEEEEEETTEEEEEEEE-CCCSSCE------EEEEECSSSSEEEEEET
T ss_pred CcEEEEEEecCCCCCCCEEEEEcCCC-----CEEEEECCCCCeeeeeee-ccCCCCE------EEEEECCCCCEEEEEeC
Confidence 45899999986 55676655432 456662 2322222222 2333333 78999999999988877
Q ss_pred cCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCC
Q 003363 228 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 307 (826)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~ 307 (826)
+...+ .|+.....................|.++....+++.....|.+||+.+++..... ......+..++|+|||+
T Consensus 101 D~~i~--lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~-~~~~~~v~~~~~spdg~ 177 (321)
T 3ow8_A 101 DAHIR--LWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL-DTRGKFILSIAYSPDGK 177 (321)
T ss_dssp TSEEE--EEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE-ECSSSCEEEEEECTTSS
T ss_pred CCcEE--EEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe-cCCCceEEEEEECCCCC
Confidence 76543 3332222111112222333445678888555556666789999999988755431 22334577899999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEE
Q 003363 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFL 386 (826)
Q Consensus 308 ~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l 386 (826)
. |+..+ .+..|+++|+ .+++ ...+..+...+....|||||++|
T Consensus 178 ~----lasg~---------------~dg~i~iwd~-----------------~~~~~~~~~~~h~~~v~~l~~spd~~~l 221 (321)
T 3ow8_A 178 Y----LASGA---------------IDGIINIFDI-----------------ATGKLLHTLEGHAMPIRSLTFSPDSQLL 221 (321)
T ss_dssp E----EEEEE---------------TTSCEEEEET-----------------TTTEEEEEECCCSSCCCEEEECTTSCEE
T ss_pred E----EEEEc---------------CCCeEEEEEC-----------------CCCcEEEEEcccCCceeEEEEcCCCCEE
Confidence 8 87765 3347889998 4444 45566667778899999999988
Q ss_pred EEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCC
Q 003363 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 466 (826)
Q Consensus 387 ~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~ 466 (826)
+..+.+ ..|.+||+.++.......+ +...+..++|+|||+.|+ +...++
T Consensus 222 ~s~s~d-----------g~i~iwd~~~~~~~~~~~~-------------------h~~~v~~~~~sp~~~~l~-s~s~D~ 270 (321)
T 3ow8_A 222 VTASDD-----------GYIKIYDVQHANLAGTLSG-------------------HASWVLNVAFCPDDTHFV-SSSSDK 270 (321)
T ss_dssp EEECTT-----------SCEEEEETTTCCEEEEECC-------------------CSSCEEEEEECTTSSEEE-EEETTS
T ss_pred EEEcCC-----------CeEEEEECCCcceeEEEcC-------------------CCCceEEEEECCCCCEEE-EEeCCC
Confidence 866654 3488999876543211000 111344678999999654 444444
Q ss_pred eEEEEEEECCCCcEEEec-CCCCCeeeEEEeecCCEEEEEE
Q 003363 467 SQVIISVNVSSGELLRIT-PAESNFSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 467 ~~~l~~vdl~tg~~~~lt-~~~~~~~~~~~s~dg~~l~~~~ 506 (826)
. +..+|+.+++..... .....+....|+++++.|+...
T Consensus 271 ~--v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 271 S--VKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG 309 (321)
T ss_dssp C--EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred c--EEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEe
Confidence 4 555577777755443 3334566667888888765444
|
| >3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P | Back alignment and structure |
|---|
Probab=99.46 E-value=6.1e-13 Score=141.35 Aligned_cols=105 Identities=22% Similarity=0.401 Sum_probs=72.4
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHH-CCcEEEEECCCCCCCCchhhhhcCCCCCC-cchHHHHHHHHHHHHHcCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVG-SQDVNDVLTAIDHVIDMGLA 668 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~-~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~-~~~~~D~~~~i~~l~~~~~~ 668 (826)
..|+||++||++.+ ...|...+..|++ .+|.|+++|+||.| .+.... ...+. ...++|+.+.++.+... +
T Consensus 37 ~~p~lvllHG~~~~--~~~w~~~~~~L~~~~~~~via~Dl~GhG---~S~~~~-~~~~~~~~~a~dl~~~l~~l~~~--~ 108 (316)
T 3c5v_A 37 EGPVLLLLHGGGHS--ALSWAVFTAAIISRVQCRIVALDLRSHG---ETKVKN-PEDLSAETMAKDVGNVVEAMYGD--L 108 (316)
T ss_dssp SSCEEEEECCTTCC--GGGGHHHHHHHHTTBCCEEEEECCTTST---TCBCSC-TTCCCHHHHHHHHHHHHHHHHTT--C
T ss_pred CCcEEEEECCCCcc--cccHHHHHHHHhhcCCeEEEEecCCCCC---CCCCCC-ccccCHHHHHHHHHHHHHHHhcc--C
Confidence 34789999997654 5578888888876 38999999999954 432110 01111 11245555666655321 1
Q ss_pred CCCcEEEEEecchHHHHHHHHHh--CCCceeEEEecCCc
Q 003363 669 NPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPL 705 (826)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~ 705 (826)
.+++.|+||||||.+++.+|.+ +|+ ++++|+.++.
T Consensus 109 -~~~~~lvGhSmGG~ia~~~A~~~~~p~-v~~lvl~~~~ 145 (316)
T 3c5v_A 109 -PPPIMLIGHSMGGAIAVHTASSNLVPS-LLGLCMIDVV 145 (316)
T ss_dssp -CCCEEEEEETHHHHHHHHHHHTTCCTT-EEEEEEESCC
T ss_pred -CCCeEEEEECHHHHHHHHHHhhccCCC-cceEEEEccc
Confidence 2689999999999999999985 576 9999988764
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-12 Score=135.18 Aligned_cols=236 Identities=13% Similarity=0.180 Sum_probs=163.3
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccC
Q 003363 160 VPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 238 (826)
Q Consensus 160 ~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~ 238 (826)
.+++||++|+|....+ ..+++.+. ++...++++... .--+++||++|+|+.....+...
T Consensus 20 ~~~~~g~~iy~~n~~d--~~~ly~~~~dg~~~~~l~~~~--------------~~~i~~~g~~Iyy~~~~~~~~~~---- 79 (302)
T 3s25_A 20 LFCESDGEVFFSNTND--NGRLYAMNIDGSNIHKLSNDT--------------AMYINADKNYVYYVRNNNQKITS---- 79 (302)
T ss_dssp CEEEETTEEEEEEGGG--TTEEEEEETTSCSCEEEEEEE--------------EEEEEECSSEEEEEEECC---------
T ss_pred EEEEeCCEEEEEeCCC--CceEEEEcCCCCCCEEccCCc--------------eeeEEEcCCEEEEEECCCCcccc----
Confidence 3567999999986542 35799999 555777776531 23478999999999875421100
Q ss_pred CCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEee
Q 003363 239 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGW 318 (826)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~ 318 (826)
..+....+..||++++++++.+.|. ... ...|+|+|++ |+|+..
T Consensus 80 --------------------------~~~~~~n~~~Iy~i~~dg~~~~~l~--~~~----~~~~s~~g~~----Iy~~~~ 123 (302)
T 3s25_A 80 --------------------------QTFFSYDRNSLCRIKRNGHGSTVLD--PDP----CIYASLIGNY----IYYLHY 123 (302)
T ss_dssp ---------------------------CCSSCCSEEEEEEETTSCCCEEEE--CSC----EEEEEEETTE----EEEEEE
T ss_pred --------------------------cceeccCCCeEEEEeCCCCcceEee--cCC----ccEEEEeCCE----EEEEee
Confidence 0000113478999999999888873 221 2379999999 999862
Q ss_pred cCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCC
Q 003363 319 SSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSG 398 (826)
Q Consensus 319 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g 398 (826)
... ....||++++ ++...++|+.+.. +.|+|||++|+|.+..
T Consensus 124 ~~~-----------~~~~Iy~~~~-----------------dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g------ 165 (302)
T 3s25_A 124 DTQ-----------TATSLYRIRI-----------------DGEEKKKIKNHYL----FTCNTSDRYFYYNNPK------ 165 (302)
T ss_dssp SSS-----------SCEEEEEEET-----------------TSCCCEEEESSCC----CCSEEETTEEEEECTT------
T ss_pred cCC-----------CCceEEEEEC-----------------CCCCeEEEeCCCc----eEeeEECCEEEEEeCC------
Confidence 111 2237999998 7777888887643 5679999999999762
Q ss_pred CCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCC
Q 003363 399 AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG 478 (826)
Q Consensus 399 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg 478 (826)
..+|++++++++..+.+..+. . ..++.|+|+.|+++.. .....|++++++++
T Consensus 166 ----~~~Iy~~~l~g~~~~~l~~~~----------------------~-~~~~~P~g~~iy~t~~-~~~~~I~~~~ldG~ 217 (302)
T 3s25_A 166 ----NGQLYRYDTASQSEALFYDCN----------------------C-YKPVVLDDTNVYYMDV-NRDNAIVHVNINNP 217 (302)
T ss_dssp ----TCCEEEEETTTTEEEEEECSC----------------------E-EEEEEEETTEEEEEEG-GGTTEEEEECSSSC
T ss_pred ----CceEEEEECCCCCEEEEeCCC----------------------c-cceeeecCCEEEEEEc-CCCcEEEEEECCCC
Confidence 257999999886654332111 0 1134589999998754 33379999999999
Q ss_pred cEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 479 ELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 479 ~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
..+.|+.... ..++++++.|++...... ..|+..++.+.
T Consensus 218 ~~~~Lt~~~~----~~~~~~g~~Iy~~~~~~~--~~i~~~~~DG~ 256 (302)
T 3s25_A 218 NPVVLTEANI----EHYNVYGSLIFYQRGGDN--PALCVVKNDGT 256 (302)
T ss_dssp CCEECSCSCE----EEEEEETTEEEEEECSSS--CEEEEEETTSC
T ss_pred CeEEEeCCCc----ceEEECCCEEEEEECCCC--cEEEEEECCCC
Confidence 9999875432 458999999988754433 67999988764
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-11 Score=137.67 Aligned_cols=261 Identities=13% Similarity=0.045 Sum_probs=149.9
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
.+...+|||||++|+++...+ +.-.+|.+.. .+...+.+... ...+. +..++|||||+.|+..+.
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~d-g~v~iwd~~~~~~~~~~~~~~~-~~~~~------v~~~~~sp~~~~l~~~~~------ 169 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSD-KSLLVFDVDKTSKNVLKLRKRF-CFSKR------PNAISIAEDDTTVIIADK------ 169 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGG-TEEEEEEECSSSSSCEEEEEEE-ECSSC------EEEEEECTTSSEEEEEET------
T ss_pred ceEEEEEcCCCCEEEEEECCC-CeEEEEECcCCCCceeeeeecc-cCCCC------ceEEEEcCCCCEEEEEeC------
Confidence 478899999999986554432 3333333331 44444443211 11111 278999999999988643
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEe-----ccCCCCCCccceEEEeeC---
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA-----VKGIPKSLSVGQVVWAPL--- 305 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~-----l~~~~~~~~~~~~~wSPD--- 305 (826)
...+++|++.+++... + ......+..++|+||
T Consensus 170 --------------------------------------~g~v~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~ 209 (450)
T 2vdu_B 170 --------------------------------------FGDVYSIDINSIPEEKFTQEPI--LGHVSMLTDVHLIKDSDG 209 (450)
T ss_dssp --------------------------------------TSEEEEEETTSCCCSSCCCCCS--EECSSCEEEEEEEECTTS
T ss_pred --------------------------------------CCcEEEEecCCcccccccceee--ecccCceEEEEEcCCCCC
Confidence 2568999988776542 2 122346778999999
Q ss_pred CCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-cee-cCCCCccccCceecCCC
Q 003363 306 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVN-LTESISSAFFPRFSPDG 383 (826)
Q Consensus 306 g~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~-Lt~~~~~~~~p~~SpDG 383 (826)
|+. |+..+ .+..|+++|+ .++. ... +..+...+..+.|| ||
T Consensus 210 ~~~----l~s~~---------------~d~~i~vwd~-----------------~~~~~~~~~~~~h~~~v~~~~~s-d~ 252 (450)
T 2vdu_B 210 HQF----IITSD---------------RDEHIKISHY-----------------PQCFIVDKWLFGHKHFVSSICCG-KD 252 (450)
T ss_dssp CEE----EEEEE---------------TTSCEEEEEE-----------------SCTTCEEEECCCCSSCEEEEEEC-ST
T ss_pred CcE----EEEEc---------------CCCcEEEEEC-----------------CCCceeeeeecCCCCceEEEEEC-CC
Confidence 776 66555 2347888888 4443 333 45667778899999 99
Q ss_pred CEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccC--CCCCc----ccccCCCCCCccccCCCE
Q 003363 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAE--GDCFP----GLYSSSILSNPWLSDGCT 457 (826)
Q Consensus 384 ~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~f~----g~~~~~~~~~~ws~Dg~~ 457 (826)
++|+..+.+ ..|.+||+.++...........+..+..... ...|. ......+..+.|+|||+.
T Consensus 253 ~~l~s~~~d-----------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 321 (450)
T 2vdu_B 253 YLLLSAGGD-----------DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF 321 (450)
T ss_dssp TEEEEEESS-----------SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE
T ss_pred CEEEEEeCC-----------CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE
Confidence 998876643 4699999988664221110000000000000 00000 001123456789999998
Q ss_pred EEEEEEeCCeEEEEEE-ECCCCcEE---EecCCCCCeeeEEEeecCCEEEEEEeCCCCCC------eEEEEee
Q 003363 458 MLLSSIWGSSQVIISV-NVSSGELL---RITPAESNFSWSLLTLDGDNIIAVSSSPVDVP------QVKYGYF 520 (826)
Q Consensus 458 l~~~~~~~~~~~l~~v-dl~tg~~~---~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~------~l~~~~~ 520 (826)
|++.....+...+|.+ +..+++.+ .+... ..+....|++ +.+++...+...|. ++|.++.
T Consensus 322 l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~--~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 322 VAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN--DEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET--TEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC--CcEEEEEecccCCCCCCcceEEEEEEc
Confidence 8766545566666665 22333333 23333 4344445555 56777776666554 6666554
|
| >3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.2e-14 Score=148.11 Aligned_cols=195 Identities=14% Similarity=0.128 Sum_probs=126.6
Q ss_pred CeeEEEEEEecCCCCC-CCCCcEEEEEcCCCCCCCCccchHHHHHHHH------CCcEEEEECCCCCCCCchhhhhc---
Q 003363 573 QKPFEAIFVSSSHKKD-CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS------VGYSLLIVNYRGSLGFGEEALQS--- 642 (826)
Q Consensus 573 g~~l~~~~~~P~~~~~-~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~------~G~~Vl~~d~rG~~g~G~~~~~~--- 642 (826)
+.+.+.++|.|++++. .+++|+|+++||... ..........+.. .+++||.+++.. ...++...
T Consensus 23 ~~~r~~~VylP~~y~~~~~~yPVlylldG~~~---f~~~~~~~~~l~~~~~~~~~~~IvV~i~~~~---R~~dytp~~~~ 96 (331)
T 3gff_A 23 KETREYVIALPEGYAQSLEAYPVVYLLDGEDQ---FDHMASLLQFLSQGTMPQIPKVIIVGIHNTN---RMRDYTPTHTL 96 (331)
T ss_dssp TEEEEEEEECCTTGGGSCCCEEEEEESSHHHH---HHHHHHHHHHHTCSSSCSSCCCEEEEECCSS---HHHHSCSSCCS
T ss_pred CCeEEEEEEeCCCCCCCCCCccEEEEecChhh---hHHHHHHHHHHHhhhhcCCCCEEEEEECCCC---cccccCCCccc
Confidence 5678899999999865 688999999999421 0111223344443 358899988621 11111000
Q ss_pred -----------CCCCCCcchHHHHH--HHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchh
Q 003363 643 -----------LPGKVGSQDVNDVL--TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709 (826)
Q Consensus 643 -----------~~~~~~~~~~~D~~--~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~ 709 (826)
.+...+.....+.+ +.+.++.++..+++.| +|+||||||+++++++.++|++|+++++.+|...+.
T Consensus 97 ~~~~G~~~~~~~~~~g~~~~~~~~l~~el~p~i~~~~~~~~~r-~i~G~S~GG~~al~~~~~~p~~F~~~~~~S~~~w~~ 175 (331)
T 3gff_A 97 VLPSGNKGNPQYQHTGGAGRFLDFIEKELAPSIESQLRTNGIN-VLVGHSFGGLVAMEALRTDRPLFSAYLALDTSLWFD 175 (331)
T ss_dssp BCTTSSBCCGGGGGCCCHHHHHHHHHHTHHHHHHHHSCEEEEE-EEEEETHHHHHHHHHHHTTCSSCSEEEEESCCTTTT
T ss_pred cccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHCCCCCCe-EEEEECHHHHHHHHHHHhCchhhheeeEeCchhcCC
Confidence 00011111223322 4455666666666655 799999999999999999999999999999965321
Q ss_pred hhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCC-------CCCcHHHHHHH
Q 003363 710 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL-------RVPVSNGLQYA 782 (826)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~-------~vp~~~~~~~~ 782 (826)
.. . ..+...... ........|+++.+|+.|. .++...+++++
T Consensus 176 ~~------------~--------------~~~~~~~~~-----~~~~~~~~~l~l~~G~~d~~~~~~~~~~~~~~~~~l~ 224 (331)
T 3gff_A 176 SP------------H--------------YLTLLEERV-----VKGDFKQKQLFMAIANNPLSPGFGVSSYHKDLNLAFA 224 (331)
T ss_dssp TT------------H--------------HHHHHHHHH-----HHCCCSSEEEEEEECCCSEETTTEECCHHHHHHHHHH
T ss_pred hH------------H--------------HHHHHHHHh-----hcccCCCCeEEEEeCCCCCCCccchHHHHHHHHHHHH
Confidence 00 0 001111111 1112245799999999998 57788889999
Q ss_pred HHHHhC---CCCEEEEEeCCCCCCCC
Q 003363 783 RALREK---GVETKVIVFPNDVHGIE 805 (826)
Q Consensus 783 ~~l~~~---g~~~~~~~~p~~~H~~~ 805 (826)
++|++. |+++++.+||+++|+..
T Consensus 225 ~~Lk~~~~~g~~~~~~~~pg~~H~sv 250 (331)
T 3gff_A 225 DKLTKLAPKGLGFMAKYYPEETHQSV 250 (331)
T ss_dssp HHHHHHCCTTEEEEEEECTTCCTTTH
T ss_pred HHHHhccCCCceEEEEECCCCCcccc
Confidence 999986 77899999999999764
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-12 Score=138.32 Aligned_cols=267 Identities=12% Similarity=0.041 Sum_probs=141.7
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003363 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (826)
Q Consensus 103 ~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (826)
.+||||++|++..... .....+.++.++..++....+...+. ........++ ||++|++....+ +.-.+|
T Consensus 56 ~~spdg~~l~~~~~~~-----~~~~~v~~~~~~~~~g~~~~~~~~~~--~~~~p~~~~~--dg~~l~~~~~~~-~~v~~~ 125 (361)
T 3scy_A 56 IPSADGKFVYSVNEFS-----KDQAAVSAFAFDKEKGTLHLLNTQKT--MGADPCYLTT--NGKNIVTANYSG-GSITVF 125 (361)
T ss_dssp EECTTSSEEEEEECCS-----STTCEEEEEEEETTTTEEEEEEEEEC--SSSCEEEEEE--CSSEEEEEETTT-TEEEEE
T ss_pred EECCCCCEEEEEEccC-----CCCCcEEEEEEeCCCCcEEEeeEecc--CCCCcEEEEE--CCCEEEEEECCC-CEEEEE
Confidence 3489999886654321 12245555566554344444432210 0022344555 999887665432 333333
Q ss_pred EEecCCceeE---EEecCC-CccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcce
Q 003363 183 ELWSQSQLEK---EFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 258 (826)
Q Consensus 183 ~i~~~~~~~~---~~~~~~-~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (826)
.+...+.... ...... +..-.--.......+.|||||++|++....
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~------------------------------ 175 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG------------------------------ 175 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT------------------------------
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC------------------------------
Confidence 3333333221 111111 100000000011468999999988876421
Q ss_pred eecCCCccCCCccCceEEEEEccC--C----c-e------EeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceee
Q 003363 259 WEEDWGETYAGKRQPSLFVININS--G----E-V------QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL 325 (826)
Q Consensus 259 ~~~d~g~~~~~~~~~~l~v~d~~~--g----~-~------~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~ 325 (826)
...|++|+++. + + + ..+. ......+..++|+|||+. |++...
T Consensus 176 -------------~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~spdg~~----l~v~~~------- 230 (361)
T 3scy_A 176 -------------TDQIHKFNINPNANADNKEKFLTKGTPEAFK-VAPGSGPRHLIFNSDGKF----AYLINE------- 230 (361)
T ss_dssp -------------TTEEEEEEECTTCCTTTCCCCEEEEEEEEEE-CCTTCCEEEEEECTTSSE----EEEEET-------
T ss_pred -------------CCEEEEEEEcCCCCcccccceeeccccccee-cCCCCCCeEEEEcCCCCE----EEEEcC-------
Confidence 24566676653 3 2 2 1111 233445678999999996 665541
Q ss_pred eeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceec------CCCCccccCceecCCCCEEEEEeccCCCCCCC
Q 003363 326 GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL------TESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 399 (826)
Q Consensus 326 g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L------t~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~ 399 (826)
....|+++++ .++..+.+ ..+......+.|||||++|+......
T Consensus 231 -------~~~~v~v~~~-----------------~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~------ 280 (361)
T 3scy_A 231 -------IGGTVIAFRY-----------------ADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK------ 280 (361)
T ss_dssp -------TTCEEEEEEE-----------------ETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS------
T ss_pred -------CCCeEEEEEe-----------------cCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC------
Confidence 2236778887 33333222 11122345789999999876544330
Q ss_pred CcccceEEEEeCC--CCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCC
Q 003363 400 HSATDSLHRIDWP--TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS 477 (826)
Q Consensus 400 ~~~~~~l~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~t 477 (826)
...|.+|+++ ++....+ ..+.. + ..+..++|+|||++|+++....+...+|.+|..+
T Consensus 281 ---~~~i~v~~~~~~~g~~~~~--------~~~~~---g-------~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~ 339 (361)
T 3scy_A 281 ---ADGVAIFKVDETNGTLTKV--------GYQLT---G-------IHPRNFIITPNGKYLLVACRDTNVIQIFERDQAT 339 (361)
T ss_dssp ---SCEEEEEEECTTTCCEEEE--------EEEEC---S-------SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTT
T ss_pred ---CCEEEEEEEcCCCCcEEEe--------eEecC---C-------CCCceEEECCCCCEEEEEECCCCCEEEEEEECCC
Confidence 2456666664 3332111 10110 0 1234678999999888776667888999999999
Q ss_pred CcEEEecC
Q 003363 478 GELLRITP 485 (826)
Q Consensus 478 g~~~~lt~ 485 (826)
|+++.+..
T Consensus 340 g~~~~~~~ 347 (361)
T 3scy_A 340 GLLTDIKK 347 (361)
T ss_dssp CCEEECSC
T ss_pred CcEeecce
Confidence 99887753
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.8e-12 Score=140.34 Aligned_cols=294 Identities=7% Similarity=0.054 Sum_probs=168.6
Q ss_pred cCCCCcceEEEEEeech--hhcccceeEEEEEEeecCCCC-ccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCC
Q 003363 103 SGNGNGTQAMFSISQPN--LLANKRKKFMLSTVISKENEN-SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESP 179 (826)
Q Consensus 103 ~~s~dg~~v~~~~~~~~--~~~~~~~~~l~~~~i~~~~~~-~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~ 179 (826)
.+||||+.+.++.+... +........+.++++...... ........ ..+...+|||||++|+.....+
T Consensus 19 ~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~dg---- 89 (416)
T 2pm9_A 19 AWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVD-----SKFNDLDWSHNNKIIAGALDNG---- 89 (416)
T ss_dssp CBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCS-----SCEEEEEECSSSSCEEEEESSS----
T ss_pred eeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecC-----CceEEEEECCCCCeEEEEccCC----
Confidence 45899985555432110 011123456667776433211 11111111 4588999999999999876543
Q ss_pred eEEEEecCCc----eeEEEecCCCccccccCCCcccceeecCC-CCeEEEEeecCCCCCCCccCCCCC---------CCC
Q 003363 180 IQFELWSQSQ----LEKEFHVPQTVHGSVYADGWFEGISWNSD-ETLIAYVAEEPSPSKPTFSLGSTK---------GGS 245 (826)
Q Consensus 180 ~~~~i~~~~~----~~~~~~~~~~~~g~v~~~~~~~~~~wSPD-g~~ia~~~~~~~~~~~~~~~~~~~---------~~~ 245 (826)
.+.+|+-.. ...+..+ ....+.| ..+.|+|| ++.|+..+.+..... |+..... ...
T Consensus 90 -~v~vw~~~~~~~~~~~~~~~-~~h~~~v------~~~~~~~~~~~~l~s~~~dg~v~i--wd~~~~~~~~~~~~~~~~~ 159 (416)
T 2pm9_A 90 -SLELYSTNEANNAINSMARF-SNHSSSV------KTVKFNAKQDNVLASGGNNGEIFI--WDMNKCTESPSNYTPLTPG 159 (416)
T ss_dssp -CEEEECCSSTTSCCCEEEEC-CCSSSCC------CEEEECSSSTTBEEEECSSSCEEB--CBTTTTSSCTTTCCCBCCC
T ss_pred -eEEEeecccccccccchhhc-cCCccce------EEEEEcCCCCCEEEEEcCCCeEEE--EECCCCccccccccccccc
Confidence 355662211 1222222 2222333 79999999 788887776665433 3322211 011
Q ss_pred CCccCCCCCCcceeecCCCc-cCCCccCceEEEEEccCCceEeccCCCC-----CCccceEEEeeCCCCCccEEEEEeec
Q 003363 246 SDKDCNSWKGQGDWEEDWGE-TYAGKRQPSLFVININSGEVQAVKGIPK-----SLSVGQVVWAPLNEGLHQYLVFVGWS 319 (826)
Q Consensus 246 ~~~~~~~~~~~~~~~~d~g~-~~~~~~~~~l~v~d~~~g~~~~l~~~~~-----~~~~~~~~wSPDg~~~~~~lvf~~~~ 319 (826)
....+........|.++.+. .+++.....|.+||+.+++......... ...+..++|+|||+. +++++..
T Consensus 160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~l~~~~~ 235 (416)
T 2pm9_A 160 QSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST----RVATATG 235 (416)
T ss_dssp CSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT----EEEEEEC
T ss_pred cccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC----EEEEEEC
Confidence 12334455567788888443 3444567889999999887654421221 456788999999976 6666522
Q ss_pred CcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCC--cceecC-CCCccccCceecC-CCCEEEEEeccCCC
Q 003363 320 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PVVNLT-ESISSAFFPRFSP-DGKFLVFLSAKSSV 395 (826)
Q Consensus 320 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~Lt-~~~~~~~~p~~Sp-DG~~l~f~s~~~~~ 395 (826)
.. ....|+++|+ .++ ....+. .+...+....|+| ||+.|+..+.+
T Consensus 236 d~-----------~~~~i~~~d~-----------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d--- 284 (416)
T 2pm9_A 236 SD-----------NDPSILIWDL-----------------RNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD--- 284 (416)
T ss_dssp CS-----------SSCCCCEEET-----------------TSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESS---
T ss_pred CC-----------CCceEEEEeC-----------------CCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCC---
Confidence 11 1126888887 332 334454 5667788999999 89888766644
Q ss_pred CCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003363 396 DSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (826)
Q Consensus 396 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl 475 (826)
..|++||+.+++.... +.. +...+..+.|+||+..++++...++. |..+|+
T Consensus 285 --------g~v~~wd~~~~~~~~~----------~~~---------~~~~v~~~~~s~~~~~~l~s~~~d~~--i~iw~~ 335 (416)
T 2pm9_A 285 --------NTVLLWNPESAEQLSQ----------FPA---------RGNWCFKTKFAPEAPDLFACASFDNK--IEVQTL 335 (416)
T ss_dssp --------SEEEEECSSSCCEEEE----------EEC---------SSSCCCCEEECTTCTTEEEECCSSSE--EEEEES
T ss_pred --------CCEEEeeCCCCcccee----------ecC---------CCCceEEEEECCCCCCEEEEEecCCc--EEEEEc
Confidence 4589999887543211 000 11245678999999445555554554 444566
Q ss_pred CCCc
Q 003363 476 SSGE 479 (826)
Q Consensus 476 ~tg~ 479 (826)
.+++
T Consensus 336 ~~~~ 339 (416)
T 2pm9_A 336 QNLT 339 (416)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 5544
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.5e-12 Score=137.01 Aligned_cols=268 Identities=12% Similarity=0.067 Sum_probs=165.7
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
..+....|||||++|+..+..+ .+.+|+ .++........ .+. +..++|||||+.|+..+.+...
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg-----~v~iWd~~~~~~~~~~~~~---~~~------v~~~~~s~~~~~l~s~~~d~~v 121 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDG-----KLIIWDSYTTNKVHAIPLR---SSW------VMTCAYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTT-----EEEEEETTTCCEEEEEECS---SSC------EEEEEECTTSSEEEEEETTCEE
T ss_pred CceEEEEECCCCCEEEEEeCCC-----cEEEEECCCCCcceEeecC---Ccc------EEEEEECCCCCEEEEEeCCCeE
Confidence 4588999999999998876544 577774 33333322221 112 2789999999999988766543
Q ss_pred CCCCccCCCCCC----CCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCC
Q 003363 232 SKPTFSLGSTKG----GSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 307 (826)
Q Consensus 232 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~ 307 (826)
. .|+...... ......+........|.++ +..+++..+..|.+||+.+++..... ......+..++|+|||+
T Consensus 122 ~--iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~s~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~ 197 (340)
T 1got_B 122 S--IYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDTR 197 (340)
T ss_dssp E--EEETTTCSBSCEEEEEEECCSSCEEEEEEEET-TEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSS
T ss_pred E--EEECccCCCcceeEEEecCCCccEEEEEECCC-CcEEEEECCCcEEEEECCCCcEEEEE-cCCCCceEEEEECCCCC
Confidence 2 222111100 0111223333444456655 45666667889999999988765431 23344678899999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEE
Q 003363 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFL 386 (826)
Q Consensus 308 ~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l 386 (826)
. |+..+ .+..|.++|+ .++. ...+..+...+....|+|||+.|
T Consensus 198 ~----l~sg~---------------~d~~v~~wd~-----------------~~~~~~~~~~~h~~~v~~v~~~p~~~~l 241 (340)
T 1got_B 198 L----FVSGA---------------CDASAKLWDV-----------------REGMCRQTFTGHESDINAICFFPNGNAF 241 (340)
T ss_dssp E----EEEEE---------------TTSCEEEEET-----------------TTCSEEEEECCCSSCEEEEEECTTSSEE
T ss_pred E----EEEEe---------------CCCcEEEEEC-----------------CCCeeEEEEcCCcCCEEEEEEcCCCCEE
Confidence 6 66554 3347888998 4443 45666677778899999999998
Q ss_pred EEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCC
Q 003363 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 466 (826)
Q Consensus 387 ~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~ 466 (826)
+..+.+ ..|.+||+.++..... .. ... ....+..++|+|||+.|+. ...++
T Consensus 242 ~s~s~d-----------~~v~iwd~~~~~~~~~----------~~--~~~-----~~~~v~~~~~s~~g~~l~~-g~~d~ 292 (340)
T 1got_B 242 ATGSDD-----------ATCRLFDLRADQELMT----------YS--HDN-----IICGITSVSFSKSGRLLLA-GYDDF 292 (340)
T ss_dssp EEEETT-----------SCEEEEETTTTEEEEE----------EC--CTT-----CCSCEEEEEECTTSSEEEE-EETTS
T ss_pred EEEcCC-----------CcEEEEECCCCcEEEE----------Ec--cCC-----cccceEEEEECCCCCEEEE-ECCCC
Confidence 866654 3588999877443110 00 000 0012346789999996654 44344
Q ss_pred eEEEEEEECCCCcEEE-ecCCCCCeeeEEEeecCCEEEEEE
Q 003363 467 SQVIISVNVSSGELLR-ITPAESNFSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 467 ~~~l~~vdl~tg~~~~-lt~~~~~~~~~~~s~dg~~l~~~~ 506 (826)
.+..+|+.+++... +......+....|++++..|+...
T Consensus 293 --~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 331 (340)
T 1got_B 293 --NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS 331 (340)
T ss_dssp --EEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred --eEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEc
Confidence 45666877766544 344444566667888887655443
|
| >3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat esterase family 15 (CE-15), N-linked glycosylation, secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-12 Score=134.35 Aligned_cols=218 Identities=15% Similarity=0.154 Sum_probs=135.1
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECC--------CCCCCCchhhhhc-
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNY--------RGSLGFGEEALQS- 642 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~--------rG~~g~G~~~~~~- 642 (826)
....+...+|+|++ ..++.|+||.+||+... ..+||+|+.+++ +|+.|+|. +.+.
T Consensus 88 ~s~~~~~~i~lP~~--~~~p~Pvii~i~~~~~~-------------~~~G~a~~~~~~~~v~~~~~~gs~g~g~-f~~ly 151 (375)
T 3pic_A 88 KSISFTVTITYPSS--GTAPYPAIIGYGGGSLP-------------APAGVAMINFNNDNIAAQVNTGSRGQGK-FYDLY 151 (375)
T ss_dssp EEEEEEEEEECCSS--SCSSEEEEEEETTCSSC-------------CCTTCEEEEECHHHHSCCSSGGGTTCSH-HHHHH
T ss_pred ceeEEEEEEECCCC--CCCCccEEEEECCCccc-------------cCCCeEEEEecccccccccCCCCcccee-ccccc
Confidence 34568899999984 35789999999985322 257999999987 55556665 3211
Q ss_pred -CCCCCCcch--HHHHHHHHHHHHHcC--CCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhc-----
Q 003363 643 -LPGKVGSQD--VNDVLTAIDHVIDMG--LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV----- 712 (826)
Q Consensus 643 -~~~~~~~~~--~~D~~~~i~~l~~~~--~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~----- 712 (826)
....++... .-++..+++||..++ .+|++||+++|||+||..++++++.. ++|+++|..++.++-....
T Consensus 152 ~~~~~~gal~awaWg~~raid~L~~~~~~~VD~~RIgv~G~S~gG~~al~~aA~D-~Ri~~~v~~~~g~~G~~~~R~~~~ 230 (375)
T 3pic_A 152 GSSHSAGAMTAWAWGVSRVIDALELVPGARIDTTKIGVTGCSRNGKGAMVAGAFE-KRIVLTLPQESGAGGSACWRISDY 230 (375)
T ss_dssp CTTCSCCHHHHHHHHHHHHHHHHHHCGGGCEEEEEEEEEEETHHHHHHHHHHHHC-TTEEEEEEESCCTTTTSCHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHhCCccCcChhhEEEEEeCCccHHHHHHHhcC-CceEEEEeccCCCCchhhhhhhhh
Confidence 123444443 358999999999988 89999999999999999999999985 5899999987654321110
Q ss_pred ----cCC-C-------CCCchhhhhccCcCCccCCCCCChhhHHHHhhcCccc---ccCCC-CCcEEEEEeCCCCCCCcH
Q 003363 713 ----GTT-D-------IPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS---HISKV-KTPTIFLLGAQDLRVPVS 776 (826)
Q Consensus 713 ----~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~---~~~~i-~~PvLii~G~~D~~vp~~ 776 (826)
+.. . ...|+ ...+ ..|... ...-|.. .+.-+ ..|+|++.| .|..+++.
T Consensus 231 ~~~~Ge~v~~~~~~~~e~~Wf-~~~~-----~~y~~~---------~~~lP~D~h~L~ALiAPRPllv~~g-~D~w~~~~ 294 (375)
T 3pic_A 231 LKSQGANIQTASEIIGEDPWF-STTF-----NSYVNQ---------VPVLPFDHHSLAALIAPRGLFVIDN-NIDWLGPQ 294 (375)
T ss_dssp HHHTTCCCCCHHHHTTTCSCS-CGGG-----GGTTTC---------GGGSSCCHHHHHHTSTTSEEEEECC-CCGGGCHH
T ss_pred hcccCccccccccccCccccc-ccch-----hhhccc---------ccccCcCHHHHHHHhCCceEEEecC-CCcccCcH
Confidence 000 0 00111 0000 001000 0001111 11222 257999999 99999887
Q ss_pred HHHHHHHHH----HhCCC--CEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 777 NGLQYARAL----REKGV--ETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 777 ~~~~~~~~l----~~~g~--~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
.....+.++ +..|+ .+.+.+..+.+|+.. +. +..+.+.+||+++|+
T Consensus 295 g~~~~~~~a~~VY~~lG~~d~~~~~~~ggH~Hc~f-p~---~~~~~~~~F~~k~L~ 346 (375)
T 3pic_A 295 SCFGCMTAAHMAWQALGVSDHMGYSQIGAHAHCAF-PS---NQQSQLTAFVQKFLL 346 (375)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGEEEECCSCCSTTCC-CG---GGHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHcCCccceEEEeeCCCccccC-CH---HHHHHHHHHHHHHhC
Confidence 665444444 33354 466654333345322 22 234789999999985
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-12 Score=137.51 Aligned_cols=236 Identities=14% Similarity=0.096 Sum_probs=150.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
..+....|+|++..++..+..+ .+.+|+ .++..+.+.... ..+ ..++|||||+.|+..+.+...
T Consensus 81 ~~v~~~~~~~~~~~l~s~s~D~-----~i~lWd~~~~~~~~~~~~~~---~~~------~~~~~spdg~~l~~g~~dg~v 146 (321)
T 3ow8_A 81 LGVVSVDISHTLPIAASSSLDA-----HIRLWDLENGKQIKSIDAGP---VDA------WTLAFSPDSQYLATGTHVGKV 146 (321)
T ss_dssp SCEEEEEECSSSSEEEEEETTS-----EEEEEETTTTEEEEEEECCT---TCC------CCEEECTTSSEEEEECTTSEE
T ss_pred CCEEEEEECCCCCEEEEEeCCC-----cEEEEECCCCCEEEEEeCCC---ccE------EEEEECCCCCEEEEEcCCCcE
Confidence 4588899999999988776543 567773 333333332211 111 689999999999987765532
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
. .|+............+........|.++....+++..+..|.+||+.+++..... ......+..++|+|||+.
T Consensus 147 ~--i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~spd~~~--- 220 (321)
T 3ow8_A 147 N--IFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL-EGHAMPIRSLTFSPDSQL--- 220 (321)
T ss_dssp E--EEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCCCEEEECTTSCE---
T ss_pred E--EEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE-cccCCceeEEEEcCCCCE---
Confidence 2 2222111111112223334456678888555566667789999999988765431 233456789999999997
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEec
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~ 391 (826)
|+..+ .+..|.++|+. .......+..+...+...+|+|||++|+..+.
T Consensus 221 -l~s~s---------------~dg~i~iwd~~----------------~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 268 (321)
T 3ow8_A 221 -LVTAS---------------DDGYIKIYDVQ----------------HANLAGTLSGHASWVLNVAFCPDDTHFVSSSS 268 (321)
T ss_dssp -EEEEC---------------TTSCEEEEETT----------------TCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred -EEEEc---------------CCCeEEEEECC----------------CcceeEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence 76655 33468888982 22334566777777889999999999887665
Q ss_pred cCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003363 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (826)
Q Consensus 392 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (826)
+ ..|.+||+.++........ +...+..+.|+|||+.| ++...++...||
T Consensus 269 D-----------~~v~iwd~~~~~~~~~~~~-------------------h~~~v~~v~~s~~g~~l-~s~~~d~~i~vw 317 (321)
T 3ow8_A 269 D-----------KSVKVWDVGTRTCVHTFFD-------------------HQDQVWGVKYNGNGSKI-VSVGDDQEIHIY 317 (321)
T ss_dssp T-----------SCEEEEETTTTEEEEEECC-------------------CSSCEEEEEECTTSSEE-EEEETTCCEEEE
T ss_pred C-----------CcEEEEeCCCCEEEEEEcC-------------------CCCcEEEEEECCCCCEE-EEEeCCCeEEEE
Confidence 4 3588999877543211100 11134467899999866 455555665665
Q ss_pred E
Q 003363 472 S 472 (826)
Q Consensus 472 ~ 472 (826)
-
T Consensus 318 d 318 (321)
T 3ow8_A 318 D 318 (321)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=141.90 Aligned_cols=286 Identities=11% Similarity=0.029 Sum_probs=160.1
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (826)
+||||++|+-..... ..-....++++....... ...+...... ....+...+|||||+.|+ .... + .+.
T Consensus 50 fSpDG~~las~s~d~---~~~wd~~v~~~~~~~~~~-~~~~~~~~~~-~~~~V~~~~~s~d~~~l~-~s~d--g---~v~ 118 (357)
T 4g56_B 50 YRRDGALLLAASSLS---SRTWGGSIWVFKDPEGAP-NESLCTAGVQ-TEAGVTDVAWVSEKGILV-ASDS--G---AVE 118 (357)
T ss_dssp ECSSSCEEEEEECSS---SSSCCEEEEEESSCC----CGGGCSEEEE-CSSCEEEEEEETTTEEEE-EETT--S---CEE
T ss_pred ECCCCCEEEEEcCCC---CccccCeEEEEECCCCCc-ceeEecccCC-CCCCEEEEEEcCCCCEEE-EECC--C---EEE
Confidence 399999887543221 011245677766432211 1111110000 013588999999997665 3332 2 355
Q ss_pred Eec--CCceeEEEec-CCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceee
Q 003363 184 LWS--QSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (826)
Q Consensus 184 i~~--~~~~~~~~~~-~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (826)
+|+ .++....... ..+..+.| ..++|||||+.|+..+.+.... .|+............+...+....|.
T Consensus 119 lWd~~~~~~~~~~~~~~~~h~~~V------~~v~~spdg~~l~sgs~dg~v~--iwd~~~~~~~~~~~~h~~~v~~v~~s 190 (357)
T 4g56_B 119 LWEILEKESLLVNKFAKYEHDDIV------KTLSVFSDGTQAVSGGKDFSVK--VWDLSQKAVLKSYNAHSSEVNCVAAC 190 (357)
T ss_dssp EC--------CCCCEEECCCSSCE------EEEEECSSSSEEEEEETTSCEE--EEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred EeeccccceeEEEeeccCCCCCCE------EEEEECCCCCEEEEEeCCCeEE--EEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 663 2221111111 11222233 7899999999999888776543 33322222222233344445566677
Q ss_pred cCCCcc-CCCccCceEEEEEccCCceEec-cCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceE
Q 003363 261 EDWGET-YAGKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (826)
Q Consensus 261 ~d~g~~-~~~~~~~~l~v~d~~~g~~~~l-~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~ 338 (826)
++.... ++...+..|.+||+.+++.... ........+..++|+|++.. ++.++. .+..|+
T Consensus 191 ~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~----~la~g~--------------~d~~i~ 252 (357)
T 4g56_B 191 PGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDD----TFACGD--------------ETGNVS 252 (357)
T ss_dssp TTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTT----EEEEEE--------------SSSCEE
T ss_pred cCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccc----eEEEee--------------ccccee
Confidence 764333 3455568899999988875443 11233445678999999887 766552 234688
Q ss_pred EEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCE-EEEEeccCCCCCCCCcccceEEEEeCCCCCCC
Q 003363 339 AVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF-LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (826)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~-l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~ 417 (826)
++|+. .......+..+...+...+|||||+. |+..+.+ ..|++||+.+++..
T Consensus 253 ~wd~~----------------~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D-----------~~i~iwd~~~~~~~ 305 (357)
T 4g56_B 253 LVNIK----------------NPDSAQTSAVHSQNITGLAYSYHSSPFLASISED-----------CTVAVLDADFSEVF 305 (357)
T ss_dssp EEESS----------------CGGGCEEECCCSSCEEEEEECSSSSCCEEEEETT-----------SCEEEECTTSCEEE
T ss_pred EEECC----------------CCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCC-----------CEEEEEECCCCcEe
Confidence 89982 22334566666777888999999965 4444433 35899998875432
Q ss_pred CcccceeeeeeeeeccCCCCCcccccCCCCCCcccc-CCCEEEEEEEeCCeEEEEEEE
Q 003363 418 SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS-DGCTMLLSSIWGSSQVIISVN 474 (826)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~-Dg~~l~~~~~~~~~~~l~~vd 474 (826)
.... +...+..++|+| |++. +++...++...+|.++
T Consensus 306 ~~~~--------------------H~~~V~~vafsP~d~~~-l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 306 RDLS--------------------HRDFVTGVAWSPLDHSK-FTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EECC--------------------CSSCEEEEEECSSSTTE-EEEEETTSCEEEEECC
T ss_pred EECC--------------------CCCCEEEEEEeCCCCCE-EEEEcCCCeEEEEECC
Confidence 1110 112345778998 7774 4566666666666554
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-11 Score=136.08 Aligned_cols=275 Identities=15% Similarity=0.068 Sum_probs=154.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCcc---------ccccCCCcccceeecCCCCeE
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVH---------GSVYADGWFEGISWNSDETLI 222 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~---------g~v~~~~~~~~~~wSPDg~~i 222 (826)
..+...+|||||++||...+. ...+| ..++....+....... ...-.+..+..++|||||+.|
T Consensus 65 ~~V~~v~fspdg~~la~g~~~------~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 65 SVVCCVKFSNDGEYLATGCNK------TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp SCCCEEEECTTSSEEEEECBS------CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CEEEEEEECCCCCEEEEEcCC------cEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 347889999999999986432 23455 2333332221110000 000001134789999999999
Q ss_pred EEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEE
Q 003363 223 AYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVW 302 (826)
Q Consensus 223 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~w 302 (826)
|..+.+.... .|+............+...+....|.++....+++..+..|.+||+.+++.... ......+..++|
T Consensus 139 ~s~~~d~~i~--iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~--~~~~~~v~~~~~ 214 (393)
T 1erj_A 139 ATGAEDRLIR--IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT--LSIEDGVTTVAV 214 (393)
T ss_dssp EEEETTSCEE--EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEE
T ss_pred EEEcCCCeEE--EEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEE--EEcCCCcEEEEE
Confidence 9988776543 333222222222334555556777888865666677788999999999876544 233445778899
Q ss_pred ee-CCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceec-------CCCCcc
Q 003363 303 AP-LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNL-------TESISS 373 (826)
Q Consensus 303 SP-Dg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~L-------t~~~~~ 373 (826)
+| ||+. |+..+ .+..|.++|+ .++. ...+ ..+...
T Consensus 215 ~~~~~~~----l~~~s---------------~d~~v~iwd~-----------------~~~~~~~~~~~~~~~~~~h~~~ 258 (393)
T 1erj_A 215 SPGDGKY----IAAGS---------------LDRAVRVWDS-----------------ETGFLVERLDSENESGTGHKDS 258 (393)
T ss_dssp CSTTCCE----EEEEE---------------TTSCEEEEET-----------------TTCCEEEEEC------CCCSSC
T ss_pred ECCCCCE----EEEEc---------------CCCcEEEEEC-----------------CCCcEEEeecccccCCCCCCCC
Confidence 99 7876 66555 2336778887 3333 2233 345566
Q ss_pred ccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccce--eeeeeeeeccCCCCCcccccCCCCCCcc
Q 003363 374 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI--VDVIPVVQCAEGDCFPGLYSSSILSNPW 451 (826)
Q Consensus 374 ~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~f~g~~~~~~~~~~w 451 (826)
+....|+|||++|+..+.+ ..|.+||+.+.......... ......+ .| +...+..++|
T Consensus 259 v~~v~~~~~g~~l~s~s~d-----------~~v~~wd~~~~~~~~~~~~~~~~~~~~~~--------~~-h~~~v~~~~~ 318 (393)
T 1erj_A 259 VYSVVFTRDGQSVVSGSLD-----------RSVKLWNLQNANNKSDSKTPNSGTCEVTY--------IG-HKDFVLSVAT 318 (393)
T ss_dssp EEEEEECTTSSEEEEEETT-----------SEEEEEEC---------------CEEEEE--------EC-CSSCEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCC-----------CEEEEEECCCCCCcccccCCCCCcceEEE--------ec-ccCcEEEEEE
Confidence 7889999999998766544 45888998764432110000 0000000 00 1123446789
Q ss_pred ccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC-CCeeeEEEee
Q 003363 452 LSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTL 497 (826)
Q Consensus 452 s~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~-~~~~~~~~s~ 497 (826)
++|++.|+ +...++ .+..+|+.+++........ ..+....+++
T Consensus 319 ~~~~~~l~-sgs~D~--~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 319 TQNDEYIL-SGSKDR--GVLFWDKKSGNPLLMLQGHRNSVISVAVAN 362 (393)
T ss_dssp CGGGCEEE-EEETTS--EEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred CCCCCEEE-EEeCCC--eEEEEECCCCeEEEEECCCCCCEEEEEecC
Confidence 99998664 444344 4666788888765544332 3333344444
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.7e-11 Score=130.75 Aligned_cols=245 Identities=13% Similarity=0.153 Sum_probs=152.7
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
..+...+|||||++|+.....+ .+.+|+ .++...... ...+.| ..+.|+|||+.|+..+.+
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~---~h~~~v------~~~~~~~~~~~l~s~~~d--- 95 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSKDS-----SASVWYSLNGERLGTLD---GHTGTI------WSIDVDCFTKYCVTGSAD--- 95 (369)
T ss_dssp SCEEEEEECTTSCEEEEEESSS-----CEEEEETTTCCEEEEEC---CCSSCE------EEEEECTTSSEEEEEETT---
T ss_pred ceEEEEEEcCCCCEEEEEeCCC-----EEEEEeCCCchhhhhhh---hcCCcE------EEEEEcCCCCEEEEEeCC---
Confidence 4588999999999999876543 456663 333333332 222223 789999999999876432
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
..|.+||+.+++.... ......+..+.|+|||+.
T Consensus 96 -----------------------------------------g~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~--- 129 (369)
T 3zwl_B 96 -----------------------------------------YSIKLWDVSNGQCVAT--WKSPVPVKRVEFSPCGNY--- 129 (369)
T ss_dssp -----------------------------------------TEEEEEETTTCCEEEE--EECSSCEEEEEECTTSSE---
T ss_pred -----------------------------------------CeEEEEECCCCcEEEE--eecCCCeEEEEEccCCCE---
Confidence 5799999998887665 345556788999999997
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCc--cccCceecCCCCEEEEE
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS--SAFFPRFSPDGKFLVFL 389 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~--~~~~p~~SpDG~~l~f~ 389 (826)
|+....... .....|+.+|+......... ..........+....+ .+....|+|||+.|+..
T Consensus 130 -l~~~~~~~~----------~~~g~i~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (369)
T 3zwl_B 130 -FLAILDNVM----------KNPGSINIYEIERDSATHEL-----TKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAG 193 (369)
T ss_dssp -EEEEECCBT----------TBCCEEEEEEEEECTTTCCE-----EEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEE
T ss_pred -EEEecCCcc----------CCCCEEEEEEecCCccceee-----cccccceeeeccCCcCccceeEEEEcCCCCEEEEE
Confidence 777653210 12236777776321000000 0001112233333333 67888999999988876
Q ss_pred eccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEE
Q 003363 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (826)
Q Consensus 390 s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (826)
+.+ ..|++||+.++... ...... ....+..+.|+||++.|+.. ..+ ..
T Consensus 194 ~~d-----------g~i~i~d~~~~~~~---------~~~~~~---------~~~~v~~~~~~~~~~~l~~~-~~d--~~ 241 (369)
T 3zwl_B 194 HKD-----------GKISKYDVSNNYEY---------VDSIDL---------HEKSISDMQFSPDLTYFITS-SRD--TN 241 (369)
T ss_dssp ETT-----------SEEEEEETTTTTEE---------EEEEEC---------CSSCEEEEEECTTSSEEEEE-ETT--SE
T ss_pred cCC-----------CEEEEEECCCCcEe---------EEEEec---------CCCceeEEEECCCCCEEEEe-cCC--ce
Confidence 543 46899998773221 111100 11134467899999977544 333 35
Q ss_pred EEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCC
Q 003363 470 IISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSP 509 (826)
Q Consensus 470 l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~ 509 (826)
|..+|+.+++...............+++++..+++...+.
T Consensus 242 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 242 SFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp EEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC
T ss_pred EEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCC
Confidence 7777888888776665555566778999998877766543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=5.4e-11 Score=129.03 Aligned_cols=295 Identities=12% Similarity=0.106 Sum_probs=145.3
Q ss_pred EEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCC
Q 003363 128 FMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYAD 207 (826)
Q Consensus 128 ~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~ 207 (826)
.|+.+.++..+++...+...+.. ........+|||||++|+..... .-.+|.+...++..++.... .+|..
T Consensus 15 ~i~~~~~d~~~g~l~~~~~~~~~-~~~~~~~~a~spdg~~l~~~~~~---~v~~~~~~~~g~~~~~~~~~--~~g~~--- 85 (365)
T 1jof_A 15 AIFTVQFDDEKLTCKLIKRTEIP-QDEPISWMTFDHERKNIYGAAMK---KWSSFAVKSPTEIVHEASHP--IGGHP--- 85 (365)
T ss_dssp EEEEEEEETTTTEEEEEEEEECC-TTCCCSEEEECTTSSEEEEEEBT---EEEEEEEEETTEEEEEEEEE--CCSSG---
T ss_pred cEEEEEEECCCCCEEEeeEEccC-CCCCCcEEEECCCCCEEEEEccc---eEEEEEECCCCCEEEeeEee--cCCCC---
Confidence 46666665444443333221000 01246678999999988765442 22233332255554443321 11111
Q ss_pred CcccceeecCCCCeE-EEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEcc-CCce
Q 003363 208 GWFEGISWNSDETLI-AYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGEV 285 (826)
Q Consensus 208 ~~~~~~~wSPDg~~i-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-~g~~ 285 (826)
..++|||||++| +|++...... .+.. +.+. ....+.+|+++ .|+.
T Consensus 86 ---~~~~~spdg~~l~~~~~~~~~~~-------------------------~~~~---~~~~--~~g~v~v~~~~~~g~~ 132 (365)
T 1jof_A 86 ---RANDADTNTRAIFLLAAKQPPYA-------------------------VYAN---PFYK--FAGYGNVFSVSETGKL 132 (365)
T ss_dssp ---GGGCTTSCCEEEEEEECSSTTCC-------------------------EEEE---EESS--SCCEEEEEEECTTCCE
T ss_pred ---ccEEECCCCCEEEEEEecCCcce-------------------------eccc---eeec--CCceEEEEccCCCCcC
Confidence 568999999974 5554311000 0000 0000 12457777775 3554
Q ss_pred Ee-ccCC--CCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCC-C
Q 003363 286 QA-VKGI--PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE-D 361 (826)
Q Consensus 286 ~~-l~~~--~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~-~ 361 (826)
.. +... .....+..++|||||+. |+... . ....|+++|+ + +
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~spdG~~----l~~~~-~-------------~~~~v~~~~~-----------------~~~ 177 (365)
T 1jof_A 133 EKNVQNYEYQENTGIHGMVFDPTETY----LYSAD-L-------------TANKLWTHRK-----------------LAS 177 (365)
T ss_dssp EEEEEEEECCTTCCEEEEEECTTSSE----EEEEE-T-------------TTTEEEEEEE-----------------CTT
T ss_pred cceEeeEEeCCCCcceEEEECCCCCE----EEEEc-C-------------CCCEEEEEEE-----------------CCC
Confidence 32 2101 12335678999999996 65443 2 1236888887 4 4
Q ss_pred Ccceec---C--CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCC--CCCCCCcccceeeeeeeeeccC
Q 003363 362 LPVVNL---T--ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP--TNGNFSSLEKIVDVIPVVQCAE 434 (826)
Q Consensus 362 ~~~~~L---t--~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~--~~~~~~~~~~~~~~~~~~~~~~ 434 (826)
++...+ . .+........|||||++|+...... ..+.+++++ ++..... . ..+... +.
T Consensus 178 g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~----------~~v~v~~~~~~~g~~~~~---~-~~~~~~--~~ 241 (365)
T 1jof_A 178 GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG----------NRICEYVIDPATHMPVYT---H-HSFPLI--PP 241 (365)
T ss_dssp SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTT----------TEEEEEEECTTTCCEEEE---E-EEEESS--CT
T ss_pred CCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCC----------CeEEEEEEeCCCCcEEEc---c-ceEEcC--CC
Confidence 544322 1 1123456679999999887665432 345555443 4332100 0 001111 10
Q ss_pred CCCCcccc-----cCCCCCCc-cccCCCEEEEEEEeCC-----eEEEEEEECCCCcEEEe---cC-CCCCeeeEEEee--
Q 003363 435 GDCFPGLY-----SSSILSNP-WLSDGCTMLLSSIWGS-----SQVIISVNVSSGELLRI---TP-AESNFSWSLLTL-- 497 (826)
Q Consensus 435 ~~~f~g~~-----~~~~~~~~-ws~Dg~~l~~~~~~~~-----~~~l~~vdl~tg~~~~l---t~-~~~~~~~~~~s~-- 497 (826)
. +.|.- ......++ |+|||++||++..... ...+|.++. +|+++++ .. .........++|
T Consensus 242 ~--~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~-~g~~~~~~~~~~~~~~~~~~~a~sp~~ 318 (365)
T 1jof_A 242 G--IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD-CGSIEKQLFLSPTPTSGGHSNAVSPCP 318 (365)
T ss_dssp T--CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT-TSCEEEEEEEEECSSCCTTCCCEEECT
T ss_pred C--cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC-CCCEEEeeeeeecCCCCcccceecCCC
Confidence 0 00000 00133678 9999998876554433 455665543 6777652 11 122233457889
Q ss_pred -cCCEEEEEEeCCCCCCeEEEEeec
Q 003363 498 -DGDNIIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 498 -dg~~l~~~~s~~~~p~~l~~~~~~ 521 (826)
||+.+++..... ..|.+.+..
T Consensus 319 ~dg~~l~v~~~~~---~~v~v~~~~ 340 (365)
T 1jof_A 319 WSDEWMAITDDQE---GWLEIYRWK 340 (365)
T ss_dssp TCTTEEEEECSSS---CEEEEEEEE
T ss_pred cCCCEEEEEEcCC---CeEEEEEEc
Confidence 788766554332 235555543
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.1e-11 Score=129.37 Aligned_cols=277 Identities=10% Similarity=0.046 Sum_probs=166.3
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
..+...+|||||++|+..+..+ .+.+|+ .++....+.. .... +..++|||||+.||..+.+...
T Consensus 67 ~~V~~~~~sp~~~~l~s~s~D~-----~v~iWd~~~~~~~~~~~~---h~~~------v~~~~~s~~g~~las~~~d~~v 132 (380)
T 3iz6_a 67 GKVYSLDWTPEKNWIVSASQDG-----RLIVWNALTSQKTHAIKL---HCPW------VMECAFAPNGQSVACGGLDSAC 132 (380)
T ss_dssp SCEEEEEECTTSSCEEEEETTS-----EEEEEETTTTEEEEEEEC---CCTT------CCCCEECTTSSEEEECCSSSCC
T ss_pred cEEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCccceEEec---CCCC------EEEEEECCCCCEEEEeeCCCcE
Confidence 4588999999999999876654 677884 3333333221 1122 3789999999999988777654
Q ss_pred CCCCccCCC-----CCCCCCCccCCCCCCcceeecCCCc-cCCCccCceEEEEEccCCceEeccC----CCCCCccceEE
Q 003363 232 SKPTFSLGS-----TKGGSSDKDCNSWKGQGDWEEDWGE-TYAGKRQPSLFVININSGEVQAVKG----IPKSLSVGQVV 301 (826)
Q Consensus 232 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~d~g~-~~~~~~~~~l~v~d~~~g~~~~l~~----~~~~~~~~~~~ 301 (826)
..+...... .........+........|.++-+. .+++..+..|.+||+.+++.....+ ......+..+.
T Consensus 133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~ 212 (380)
T 3iz6_a 133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS 212 (380)
T ss_dssp EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEE
T ss_pred EEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEE
Confidence 422221110 0111223345555556667665433 4556677899999999987654421 11233566788
Q ss_pred Eee-CCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceec
Q 003363 302 WAP-LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFS 380 (826)
Q Consensus 302 wSP-Dg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~S 380 (826)
|+| +++. |+..+ .+..|.++|+.. .......+..+...+....|+
T Consensus 213 ~~~~~~~~----l~sgs---------------~D~~v~~wd~~~---------------~~~~~~~~~~h~~~v~~v~~~ 258 (380)
T 3iz6_a 213 INSLNANM----FISGS---------------CDTTVRLWDLRI---------------TSRAVRTYHGHEGDINSVKFF 258 (380)
T ss_dssp ECSSSCCE----EEEEE---------------TTSCEEEEETTT---------------TCCCCEEECCCSSCCCEEEEC
T ss_pred eecCCCCE----EEEEE---------------CCCeEEEEECCC---------------CCcceEEECCcCCCeEEEEEe
Confidence 877 6664 54444 334788888721 123345666777788999999
Q ss_pred CCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEE
Q 003363 381 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 460 (826)
Q Consensus 381 pDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~ 460 (826)
|||++|+..+.+ ..|.+||+.++..... +....... . .....+..++|+|||+.|+.
T Consensus 259 p~~~~l~s~s~D-----------~~i~lwd~~~~~~~~~----------~~~~~~~~-~-~~~~~v~~~~~s~~g~~l~~ 315 (380)
T 3iz6_a 259 PDGQRFGTGSDD-----------GTCRLFDMRTGHQLQV----------YNREPDRN-D-NELPIVTSVAFSISGRLLFA 315 (380)
T ss_dssp TTSSEEEEECSS-----------SCEEEEETTTTEEEEE----------ECCCCSSS-C-CSSCSCSEEEECSSSSEEEE
T ss_pred cCCCeEEEEcCC-----------CeEEEEECCCCcEEEE----------eccccccc-c-cccCceEEEEECCCCCEEEE
Confidence 999998866654 3589999887553211 11100000 0 00012456789999996654
Q ss_pred EEEeCCeEEEEEEECCCCcEEEec-----CCCCCeeeEEEeecCCEEEE
Q 003363 461 SSIWGSSQVIISVNVSSGELLRIT-----PAESNFSWSLLTLDGDNIIA 504 (826)
Q Consensus 461 ~~~~~~~~~l~~vdl~tg~~~~lt-----~~~~~~~~~~~s~dg~~l~~ 504 (826)
. .. +..++.+|+.+++...-. .....+....|+++|..|+.
T Consensus 316 g-~~--dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 361 (380)
T 3iz6_a 316 G-YS--NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCT 361 (380)
T ss_dssp E-CT--TSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEE
T ss_pred E-EC--CCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEE
Confidence 3 33 345666788777654322 22234556688999886543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.7e-11 Score=130.32 Aligned_cols=293 Identities=9% Similarity=-0.013 Sum_probs=167.9
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCC---CCeEEEEecCCCCCC
Q 003363 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPS---GSKLLVVRNPENESP 179 (826)
Q Consensus 103 ~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPd---G~~la~~~~~~~~~~ 179 (826)
.++|||..++...+.. .....+.++++.+............ ..+...+|+|+ |+.|+.....+
T Consensus 25 ~~~p~~~~l~~~~s~~-----~~d~~v~iw~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~l~~~~~dg---- 90 (357)
T 3i2n_A 25 KWVPCSAKFVTMGNFA-----RGTGVIQLYEIQHGDLKLLREIEKA-----KPIKCGTFGATSLQQRYLATGDFGG---- 90 (357)
T ss_dssp EECTTSSEEEEEEC-------CCCEEEEEEEECSSSEEEEEEEEES-----SCEEEEECTTCCTTTCCEEEEETTS----
T ss_pred EEcCCCceEEEecCcc-----CCCcEEEEEeCCCCcccceeeeccc-----CcEEEEEEcCCCCCCceEEEecCCC----
Confidence 3589998776553321 0245677777643321111111122 45889999999 68888765543
Q ss_pred eEEEEec--CCc-eeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCc
Q 003363 180 IQFELWS--QSQ-LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ 256 (826)
Q Consensus 180 ~~~~i~~--~~~-~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (826)
.+.+|+ .++ ...... ...+.|..-.+...++||||++.|+..+.+
T Consensus 91 -~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d---------------------------- 138 (357)
T 3i2n_A 91 -NLHIWNLEAPEMPVYSVK---GHKEIINAIDGIGGLGIGEGAPEIVTGSRD---------------------------- 138 (357)
T ss_dssp -CEEEECTTSCSSCSEEEC---CCSSCEEEEEEESGGGCC-CCCEEEEEETT----------------------------
T ss_pred -eEEEEeCCCCCccEEEEE---ecccceEEEeeccccccCCCccEEEEEeCC----------------------------
Confidence 456662 222 233222 222223111122233689999998876543
Q ss_pred ceeecCCCccCCCccCceEEEEEccCCc--eEeccCCCC--CCccceEE----EeeCCCCCccEEEEEeecCcceeeeee
Q 003363 257 GDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPK--SLSVGQVV----WAPLNEGLHQYLVFVGWSSETRKLGIK 328 (826)
Q Consensus 257 ~~~~~d~g~~~~~~~~~~l~v~d~~~g~--~~~l~~~~~--~~~~~~~~----wSPDg~~~~~~lvf~~~~~~~~~~g~~ 328 (826)
..|.+||+.+++ ...+....+ ...+..+. |+||++. |+..+
T Consensus 139 ----------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----l~~~~----------- 187 (357)
T 3i2n_A 139 ----------------GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERV----VCAGY----------- 187 (357)
T ss_dssp ----------------SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCE----EEEEE-----------
T ss_pred ----------------CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCE----EEEEc-----------
Confidence 468889988775 344421122 12444555 7899997 76665
Q ss_pred eeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecC---CCCEEEEEeccCCCCCCCCcccce
Q 003363 329 YCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSP---DGKFLVFLSAKSSVDSGAHSATDS 405 (826)
Q Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~Sp---DG~~l~f~s~~~~~~~g~~~~~~~ 405 (826)
.+..|+.+|+ .+++..........+....|+| +|+.|+..+.+ ..
T Consensus 188 ----~d~~i~i~d~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d-----------g~ 235 (357)
T 3i2n_A 188 ----DNGDIKLFDL-----------------RNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLE-----------GK 235 (357)
T ss_dssp ----TTSEEEEEET-----------------TTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEEST-----------TE
T ss_pred ----cCCeEEEEEC-----------------ccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCC-----------Ce
Confidence 3347899998 5666655566667788999999 99988876544 45
Q ss_pred EEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCC-------
Q 003363 406 LHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG------- 478 (826)
Q Consensus 406 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg------- 478 (826)
|++||+.++....... ... ... ....+..+.|+|||+.++++...++...+|.++....
T Consensus 236 i~i~d~~~~~~~~~~~----~~~-~~~---------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 301 (357)
T 3i2n_A 236 FHVFDMRTQHPTKGFA----SVS-EKA---------HKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE 301 (357)
T ss_dssp EEEEEEEEEETTTEEE----EEE-EEC---------CSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred EEEEeCcCCCccccee----eec-cCC---------CcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence 8888877644321110 000 000 1123456789999986777777777777777663221
Q ss_pred -----------cEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 003363 479 -----------ELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 479 -----------~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 521 (826)
.+..+......+....|+++++.+++..+... .|.+.++.
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~---~i~iw~~~ 352 (357)
T 3i2n_A 302 GIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQ---TVRVLIVT 352 (357)
T ss_dssp SCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTS---EEEEEEEC
T ss_pred CCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCC---cEEEEECC
Confidence 12233334445566678888887765554332 35555543
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.40 E-value=3.3e-11 Score=127.38 Aligned_cols=274 Identities=14% Similarity=0.168 Sum_probs=163.5
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
..+...+|||||++|+.....+ .+.+|+ .++..+... +..+.| ..++|+|||+.|+..+.+...
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg-----~i~iw~~~~~~~~~~~~---~h~~~v------~~~~~~~~~~~l~s~~~d~~i 89 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADK-----LIKIWGAYDGKFEKTIS---GHKLGI------SDVAWSSDSNLLVSASDDKTL 89 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEEEC---CCSSCE------EEEEECTTSSEEEEEETTSEE
T ss_pred CcEEEEEECCCCCEEEEeeCCC-----eEEEEeCCCcccchhhc---cCCCce------EEEEEcCCCCEEEEECCCCEE
Confidence 3588999999999998876543 466773 344443332 222223 789999999999998876643
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
. .|+............+........|.++....+++.....|.+||+.+++..... ......+..+.|+|||+.
T Consensus 90 ~--vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~--- 163 (312)
T 4ery_A 90 K--IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSL--- 163 (312)
T ss_dssp E--EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSE---
T ss_pred E--EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcEEEEEEcCCCCE---
Confidence 3 2332222211222334444445667777555556667789999999988754331 233446778999999997
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc-eecC-CCCccccCceecCCCCEEEEE
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLT-ESISSAFFPRFSPDGKFLVFL 389 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt-~~~~~~~~p~~SpDG~~l~f~ 389 (826)
|+..+ .+..|..+|+ .+++. ..+. ..........|+|||++|+..
T Consensus 164 -l~~~~---------------~d~~i~~wd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 210 (312)
T 4ery_A 164 -IVSSS---------------YDGLCRIWDT-----------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 210 (312)
T ss_dssp -EEEEE---------------TTSCEEEEET-----------------TTCCEEEEECCSSCCCEEEEEECTTSSEEEEE
T ss_pred -EEEEe---------------CCCcEEEEEC-----------------CCCceeeEEeccCCCceEEEEECCCCCEEEEE
Confidence 76655 2347888998 44432 3333 233456778999999998876
Q ss_pred eccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccc-cCCCEEEEEEEeCCeE
Q 003363 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL-SDGCTMLLSSIWGSSQ 468 (826)
Q Consensus 390 s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws-~Dg~~l~~~~~~~~~~ 468 (826)
+.+ ..|.+||+.++..... +....... ......|+ ++++.| ++...+ .
T Consensus 211 ~~d-----------~~i~iwd~~~~~~~~~----------~~~~~~~~-------~~~~~~~~~~~~~~l-~sg~~d--g 259 (312)
T 4ery_A 211 TLD-----------NTLKLWDYSKGKCLKT----------YTGHKNEK-------YCIFANFSVTGGKWI-VSGSED--N 259 (312)
T ss_dssp ETT-----------TEEEEEETTTTEEEEE----------ECSSCCSS-------SCCCEEEECSSSCEE-EECCTT--S
T ss_pred cCC-----------CeEEEEECCCCcEEEE----------EEecCCce-------EEEEEEEEeCCCcEE-EEECCC--C
Confidence 644 4689999877543211 00000000 00122344 456544 444333 3
Q ss_pred EEEEEECCCCcEEEecC-CCCCeeeEEEeecCCEEEEEEeCCCC
Q 003363 469 VIISVNVSSGELLRITP-AESNFSWSLLTLDGDNIIAVSSSPVD 511 (826)
Q Consensus 469 ~l~~vdl~tg~~~~lt~-~~~~~~~~~~s~dg~~l~~~~s~~~~ 511 (826)
.|..+|+.+++...... ....+....+++++..++....+.+.
T Consensus 260 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~ 303 (312)
T 4ery_A 260 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 303 (312)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTC
T ss_pred EEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCc
Confidence 56667888887665443 33345556788888866655433333
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-11 Score=132.89 Aligned_cols=198 Identities=15% Similarity=0.118 Sum_probs=128.7
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (826)
+||||+.++..... ....+.++++.+. .....+. .. ..+...+|||||++|+..++.. +..
T Consensus 141 fSpDg~~la~as~~-------~d~~i~iwd~~~~-~~~~~~~-~~-----~~V~~v~fspdg~~l~s~s~~~-----~~~ 201 (365)
T 4h5i_A 141 ISREGTVAAIASSK-------VPAIMRIIDPSDL-TEKFEIE-TR-----GEVKDLHFSTDGKVVAYITGSS-----LEV 201 (365)
T ss_dssp ECTTSSCEEEEESC-------SSCEEEEEETTTT-EEEEEEE-CS-----SCCCEEEECTTSSEEEEECSSC-----EEE
T ss_pred EcCCCCEEEEEECC-------CCCEEEEeECCCC-cEEEEeC-CC-----CceEEEEEccCCceEEecccee-----EEE
Confidence 48999998765432 3456777775322 2222222 22 3588999999999999876543 555
Q ss_pred Ee-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecC
Q 003363 184 LW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 262 (826)
Q Consensus 184 i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 262 (826)
+| ..+..... .......+ .+..++|||||+.|+..+.+..
T Consensus 202 ~~~~~~~~~~~-~~~~~~~~------~v~~v~fspdg~~l~~~s~d~~-------------------------------- 242 (365)
T 4h5i_A 202 ISTVTGSCIAR-KTDFDKNW------SLSKINFIADDTVLIAASLKKG-------------------------------- 242 (365)
T ss_dssp EETTTCCEEEE-ECCCCTTE------EEEEEEEEETTEEEEEEEESSS--------------------------------
T ss_pred EEeccCcceee-eecCCCCC------CEEEEEEcCCCCEEEEEecCCc--------------------------------
Confidence 55 33332221 11122222 2378999999999998876542
Q ss_pred CCccCCCccCceEEEEEccCCceEecc---CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEE
Q 003363 263 WGETYAGKRQPSLFVININSGEVQAVK---GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 339 (826)
Q Consensus 263 ~g~~~~~~~~~~l~v~d~~~g~~~~l~---~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~ 339 (826)
....++.|++..+....+. -......+..++|||||+. |+..+ .+..|.+
T Consensus 243 --------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~----lasgs---------------~D~~V~i 295 (365)
T 4h5i_A 243 --------KGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGEL----AVLAS---------------NDNSIAL 295 (365)
T ss_dssp --------CCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCE----EEEEE---------------TTSCEEE
T ss_pred --------ceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCc----eEEEc---------------CCCEEEE
Confidence 2246778888766543221 0223345778999999997 77766 3347889
Q ss_pred EEcccccchhhhhhhhcCCCCCCcc-ee-cCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCC
Q 003363 340 VRVSLYKSEASELELKESSSEDLPV-VN-LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (826)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~~-~~-Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~ 414 (826)
+|+ .+++. .. +..+...+...+|||||++|+-.+.+ ..|.+||++.+
T Consensus 296 wd~-----------------~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D-----------~tvrvw~ip~~ 344 (365)
T 4h5i_A 296 VKL-----------------KDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAA-----------NTIHIIKLPLN 344 (365)
T ss_dssp EET-----------------TTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETT-----------SEEEEEECCTT
T ss_pred EEC-----------------CCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCC-----------CeEEEEEcCCC
Confidence 998 55554 34 45677889999999999999877765 45888888754
|
| >3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.7e-12 Score=128.22 Aligned_cols=211 Identities=13% Similarity=0.063 Sum_probs=134.3
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCc--EEEEECCCCCCCC---chhhhh-cCC-------CC-CCc--chHHHH
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY--SLLIVNYRGSLGF---GEEALQ-SLP-------GK-VGS--QDVNDV 655 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~--~Vl~~d~rG~~g~---G~~~~~-~~~-------~~-~~~--~~~~D~ 655 (826)
.+.||++||.... ...|...+..|++.|| .|+.+|.++.+.. |.-... ..| .+ .+. ...+++
T Consensus 6 ~~pvvliHG~~~~--~~~~~~l~~~L~~~g~~~~vi~~dv~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~~l 83 (249)
T 3fle_A 6 TTATLFLHGYGGS--ERSETFMVKQALNKNVTNEVITARVSSEGKVYFDKKLSEDAANPIVKVEFKDNKNGNFKENAYWI 83 (249)
T ss_dssp CEEEEEECCTTCC--GGGTHHHHHHHHTTTSCSCEEEEEECSSCCEEESSCCC--CCSCEEEEEESSTTCCCHHHHHHHH
T ss_pred CCcEEEECCCCCC--hhHHHHHHHHHHHcCCCceEEEEEECCCCCEEEccccccccCCCeEEEEcCCCCCccHHHHHHHH
Confidence 4568899996554 6688889999999996 5888887753210 100000 000 00 011 135677
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC-----ceeEEEecCCccchhhhccCCCCCCchhhhhccCcC
Q 003363 656 LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 730 (826)
Q Consensus 656 ~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (826)
.++++.+.++. +.+++.|+||||||.+++.++.++|+ +++.+|++++..+....... .+.. ..+..
T Consensus 84 ~~~i~~l~~~~--~~~~~~lvGHSmGG~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~--~~~~---~~~~~-- 154 (249)
T 3fle_A 84 KEVLSQLKSQF--GIQQFNFVGHSMGNMSFAFYMKNYGDDRHLPQLKKEVNIAGVYNGILNMNE--NVNE---IIVDK-- 154 (249)
T ss_dssp HHHHHHHHHTT--CCCEEEEEEETHHHHHHHHHHHHHSSCSSSCEEEEEEEESCCTTCCTTTSS--CTTT---SCBCT--
T ss_pred HHHHHHHHHHh--CCCceEEEEECccHHHHHHHHHHCcccccccccceEEEeCCccCCcccccC--Ccch---hhhcc--
Confidence 78888887763 44789999999999999999998873 78899888876543211110 0000 00000
Q ss_pred CccCCCCCC--hhhHHHHhhcCcccccCCCCCcEEEEEeC------CCCCCCcHHHHHHHHHHHhCCCCEEEEEeCC--C
Q 003363 731 KDSFTESPS--VEDLTRFHSKSPISHISKVKTPTIFLLGA------QDLRVPVSNGLQYARALREKGVETKVIVFPN--D 800 (826)
Q Consensus 731 ~~~~~~~~~--~~~~~~~~~~sp~~~~~~i~~PvLii~G~------~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~--~ 800 (826)
.+.|. ......+... ...+.+.++|+|.|+|+ .|..||...++.+...+++.....+.+.+.| +
T Consensus 155 ----~g~p~~~~~~~~~l~~~--~~~~p~~~~~vl~I~G~~~~~~~sDG~V~~~Sa~~~~~l~~~~~~~y~e~~v~g~~a 228 (249)
T 3fle_A 155 ----QGKPSRMNAAYRQLLSL--YKIYCGKEIEVLNIYGDLEDGSHSDGRVSNSSSQSLQYLLRGSTKSYQEMKFKGAKA 228 (249)
T ss_dssp ----TCCBSSCCHHHHHTGGG--HHHHTTTTCEEEEEEEECCSSSCBSSSSBHHHHHTHHHHSTTCSSEEEEEEEESGGG
T ss_pred ----cCCCcccCHHHHHHHHH--HhhCCccCCeEEEEeccCCCCCCCCCcccHHHHHHHHHHHhhCCCceEEEEEeCCCC
Confidence 11111 1222222222 23345567899999998 6999999999888888877767777777866 8
Q ss_pred CCCCCCCCCHHHHHHHHHHHH
Q 003363 801 VHGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 801 ~H~~~~~~~~~~~~~~i~~w~ 821 (826)
.|..... +. ++.+.|.+||
T Consensus 229 ~Hs~l~~-n~-~V~~~I~~FL 247 (249)
T 3fle_A 229 QHSQLHE-NK-DVANEIIQFL 247 (249)
T ss_dssp STGGGGG-CH-HHHHHHHHHH
T ss_pred chhcccc-CH-HHHHHHHHHh
Confidence 8987644 33 7888888887
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-11 Score=133.51 Aligned_cols=273 Identities=7% Similarity=0.012 Sum_probs=157.9
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~ 235 (826)
.....|+|||++|+.....+ .+.+|+-......... ....+.| ..++|+|||+.|+..+.+.... .
T Consensus 100 ~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~-~~h~~~v------~~~~~~~~~~~l~s~s~d~~i~--i 165 (420)
T 3vl1_A 100 TAVDTAKLQMRRFILGTTEG-----DIKVLDSNFNLQREID-QAHVSEI------TKLKFFPSGEALISSSQDMQLK--I 165 (420)
T ss_dssp EEEEEECSSSCEEEEEETTS-----CEEEECTTSCEEEEET-TSSSSCE------EEEEECTTSSEEEEEETTSEEE--E
T ss_pred eEEEEEecCCCEEEEEECCC-----CEEEEeCCCcceeeec-ccccCcc------EEEEECCCCCEEEEEeCCCeEE--E
Confidence 55668999999999876543 4667742222222221 2232333 7999999999999888766433 3
Q ss_pred ccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCC--C--------------------
Q 003363 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP--K-------------------- 293 (826)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~--~-------------------- 293 (826)
|+............+........|.++....+++..+..|.+||+.+++........ .
T Consensus 166 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 245 (420)
T 3vl1_A 166 WSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEI 245 (420)
T ss_dssp EETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGG
T ss_pred EeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeec
Confidence 333323333333445566667789998655666667788999999988765431010 1
Q ss_pred -CCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecC-CC
Q 003363 294 -SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLT-ES 370 (826)
Q Consensus 294 -~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt-~~ 370 (826)
...+..++|+|||+. |+..+ .+..|.++|+ .++. ...+. .+
T Consensus 246 ~~~~v~~~~~s~~~~~----l~~~~---------------~dg~i~i~d~-----------------~~~~~~~~~~~~~ 289 (420)
T 3vl1_A 246 STSKKNNLEFGTYGKY----VIAGH---------------VSGVITVHNV-----------------FSKEQTIQLPSKF 289 (420)
T ss_dssp CCCCCCTTCSSCTTEE----EEEEE---------------TTSCEEEEET-----------------TTCCEEEEECCTT
T ss_pred ccCcccceEEcCCCCE----EEEEc---------------CCCeEEEEEC-----------------CCCceeEEccccc
Confidence 123345667888886 66554 3346889998 3333 33333 34
Q ss_pred CccccCceecCCCC-EEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCC
Q 003363 371 ISSAFFPRFSPDGK-FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 449 (826)
Q Consensus 371 ~~~~~~p~~SpDG~-~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 449 (826)
...+....|+|||+ .|+..+.+ ..|++||+.+++..... +..... .....
T Consensus 290 ~~~v~~~~~~~~~~~~l~~g~~d-----------g~i~vwd~~~~~~~~~~---------~~~~~~---------~~v~~ 340 (420)
T 3vl1_A 290 TCSCNSLTVDGNNANYIYAGYEN-----------GMLAQWDLRSPECPVGE---------FLINEG---------TPINN 340 (420)
T ss_dssp SSCEEEEEECSSCTTEEEEEETT-----------SEEEEEETTCTTSCSEE---------EEESTT---------SCEEE
T ss_pred CCCceeEEEeCCCCCEEEEEeCC-----------CeEEEEEcCCCcCchhh---------hhccCC---------CCceE
Confidence 56688999999999 55544433 46999999876431100 000000 11122
Q ss_pred ccccCCCEEEEEEEeCCeEEEEEEECCC--------CcEEEecCCCCCeeeEEEeecCC---EEEEEEeC
Q 003363 450 PWLSDGCTMLLSSIWGSSQVIISVNVSS--------GELLRITPAESNFSWSLLTLDGD---NIIAVSSS 508 (826)
Q Consensus 450 ~ws~Dg~~l~~~~~~~~~~~l~~vdl~t--------g~~~~lt~~~~~~~~~~~s~dg~---~l~~~~s~ 508 (826)
.+++||+ ++++...++...+|.+.... .....+......+....|++++. .++++.+.
T Consensus 341 ~~~~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~ 409 (420)
T 3vl1_A 341 VYFAAGA-LFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKN 409 (420)
T ss_dssp EEEETTE-EEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETT
T ss_pred EEeCCCC-EEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCC
Confidence 3556776 44554444555555443210 22223333334455567888887 67766653
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.4e-11 Score=130.56 Aligned_cols=199 Identities=15% Similarity=0.149 Sum_probs=128.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
..+...+|||||++|+..+..+ .+.+|+ .++..+.. .+..+.| ..+.|+||++.++..+..
T Consensus 128 ~~V~~v~~spdg~~l~sgs~d~-----~i~iwd~~~~~~~~~~---~~h~~~V------~~~~~~~~~~~~l~s~s~--- 190 (344)
T 4gqb_B 128 DIVSTVSVLSSGTQAVSGSKDI-----CIKVWDLAQQVVLSSY---RAHAAQV------TCVAASPHKDSVFLSCSE--- 190 (344)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEE---CCCSSCE------EEEEECSSCTTEEEEEET---
T ss_pred CCEEEEEECCCCCEEEEEeCCC-----eEEEEECCCCcEEEEE---cCcCCce------EEEEecCCCCCceeeecc---
Confidence 3588999999999999876543 467773 33333322 2233333 789999999866544322
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEe-ccCCCCCCccceEEEeeCCCCCc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA-VKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~-l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
+..|.+||+.+++... +........+..++|+|++..
T Consensus 191 ----------------------------------------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-- 228 (344)
T 4gqb_B 191 ----------------------------------------DNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSE-- 228 (344)
T ss_dssp ----------------------------------------TSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTT--
T ss_pred ----------------------------------------ccccccccccccceeeeeecceeeccceeeeecCCCCc--
Confidence 2568999998887544 321222335678999998877
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCE-EEEE
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF-LVFL 389 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~-l~f~ 389 (826)
++.++. .+..|.++|+. .+.....+..+...+...+|||||.. |+..
T Consensus 229 --~l~sg~--------------~dg~v~~wd~~----------------~~~~~~~~~~h~~~v~~v~fsp~g~~~lasg 276 (344)
T 4gqb_B 229 --VFVFGD--------------ENGTVSLVDTK----------------STSCVLSSAVHSQCVTGLVFSPHSVPFLASL 276 (344)
T ss_dssp --EEEEEE--------------TTSEEEEEESC----------------C--CCEEEECCSSCEEEEEECSSSSCCEEEE
T ss_pred --ceEEec--------------cCCcEEEEECC----------------CCcEEEEEcCCCCCEEEEEEccCCCeEEEEE
Confidence 666552 23478889982 23345667777778889999999965 5444
Q ss_pred eccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEE
Q 003363 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (826)
Q Consensus 390 s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (826)
+.+ ..|++||+.+++...+. + +...+..++|+|||+.|+++...++...
T Consensus 277 s~D-----------~~i~vwd~~~~~~~~~~-~-------------------H~~~V~~v~~sp~~~~llas~s~D~~v~ 325 (344)
T 4gqb_B 277 SED-----------CSLAVLDSSLSELFRSQ-A-------------------HRDFVRDATWSPLNHSLLTTVGWDHQVV 325 (344)
T ss_dssp ETT-----------SCEEEECTTCCEEEEEC-C-------------------CSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred eCC-----------CeEEEEECCCCcEEEEc-C-------------------CCCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence 433 35889998775432111 0 1124557889999998877777777666
Q ss_pred EEEEE
Q 003363 470 IISVN 474 (826)
Q Consensus 470 l~~vd 474 (826)
+|.++
T Consensus 326 ~w~v~ 330 (344)
T 4gqb_B 326 HHVVP 330 (344)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 66553
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-11 Score=131.34 Aligned_cols=303 Identities=11% Similarity=0.015 Sum_probs=163.9
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003363 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (826)
Q Consensus 102 ~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (826)
-.+||||+.++... .+..+.++++.+...........+ ....+...+|||||++||..+..+ .
T Consensus 22 l~~sp~g~~las~~---------~D~~i~iw~~~~~~~~~~~~~~~~---h~~~v~~~~~sp~g~~l~s~s~D~-----~ 84 (345)
T 3fm0_A 22 LAWNPAGTLLASCG---------GDRRIRIWGTEGDSWICKSVLSEG---HQRTVRKVAWSPCGNYLASASFDA-----T 84 (345)
T ss_dssp EEECTTSSCEEEEE---------TTSCEEEEEEETTEEEEEEEECSS---CSSCEEEEEECTTSSEEEEEETTS-----C
T ss_pred EEECCCCCEEEEEc---------CCCeEEEEEcCCCcceeeeeeccc---cCCcEEEEEECCCCCEEEEEECCC-----c
Confidence 34589999887542 233455555533211011111111 114588999999999999876543 3
Q ss_pred EEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCC---CCCCccCCCCCCc
Q 003363 182 FELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKG---GSSDKDCNSWKGQ 256 (826)
Q Consensus 182 ~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 256 (826)
..+|+ .+....+..+ .+..+.| ..++|+|||+.|+..+.+.... .|+...... ......+......
T Consensus 85 v~iw~~~~~~~~~~~~~-~~h~~~v------~~v~~sp~~~~l~s~s~D~~v~--iwd~~~~~~~~~~~~~~~h~~~v~~ 155 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTL-EGHENEV------KSVAWAPSGNLLATCSRDKSVW--VWEVDEEDEYECVSVLNSHTQDVKH 155 (345)
T ss_dssp EEEEEECCC-EEEEEEE-CCCSSCE------EEEEECTTSSEEEEEETTSCEE--EEEECTTSCEEEEEEECCCCSCEEE
T ss_pred EEEEEccCCCeEEEEEc-cCCCCCc------eEEEEeCCCCEEEEEECCCeEE--EEECCCCCCeEEEEEecCcCCCeEE
Confidence 55662 2222222222 2233333 7999999999999988776543 233211111 1112234444556
Q ss_pred ceeecCCCccCCCccCceEEEEEccCCceE---eccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccC
Q 003363 257 GDWEEDWGETYAGKRQPSLFVININSGEVQ---AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNR 333 (826)
Q Consensus 257 ~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~---~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~ 333 (826)
..|.++....+++..+..|.+||..+++.. .+ ......+..++|+|||+. |+..+.
T Consensus 156 ~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~--~~h~~~v~~l~~sp~g~~----l~s~s~--------------- 214 (345)
T 3fm0_A 156 VVWHPSQELLASASYDDTVKLYREEEDDWVCCATL--EGHESTVWSLAFDPSGQR----LASCSD--------------- 214 (345)
T ss_dssp EEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEE--CCCSSCEEEEEECTTSSE----EEEEET---------------
T ss_pred EEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEe--cCCCCceEEEEECCCCCE----EEEEeC---------------
Confidence 778888555556666788999999887643 33 233456789999999997 777662
Q ss_pred CCceEEEEcccccchhhhhhhhcCCCCC-CcceecCC-CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeC
Q 003363 334 PCALYAVRVSLYKSEASELELKESSSED-LPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 411 (826)
Q Consensus 334 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~Lt~-~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~ 411 (826)
+..|.++|............ ...... .....+.. +...+...+|+|+|..|+..+.+. .|.+|++
T Consensus 215 D~~v~iW~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~-----------~i~vw~~ 281 (345)
T 3fm0_A 215 DRTVRIWRQYLPGNEQGVAC--SGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDD-----------AIRVFQE 281 (345)
T ss_dssp TSCEEEEEEECTTCTTCCCC--C---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTS-----------CEEEEEE
T ss_pred CCeEEEeccccCCCCcccee--eccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCC-----------eEEEEEe
Confidence 22455555311000000000 000000 00112222 445677899999999988777552 3677776
Q ss_pred CCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003363 412 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (826)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vd 474 (826)
.++......... ...... . .+...+..++|+|++..++++...++...+|.+.
T Consensus 282 ~~~~~~~~~~~~-~~~~~~-~--------~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 282 DPNSDPQQPTFS-LTAHLH-Q--------AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334 (345)
T ss_dssp CTTSCTTSCCEE-EEEEET-T--------SSSSCEEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred CCCCCcceeeEE-EEeeec-c--------cccCcEeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence 654321111000 000000 0 0122455788999986566777777777777654
|
| >4g4g_A 4-O-methyl-glucuronoyl methylesterase; alpha/beta hydrolase, 3-layer alpha/beta/alpha sandwich, ROS fold, glucuronoyl esterase; 1.55A {Myceliophthora thermophila} PDB: 4g4i_A 4g4j_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=8.5e-12 Score=131.04 Aligned_cols=216 Identities=16% Similarity=0.128 Sum_probs=133.0
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECC--------CCCCCCchhhhhcC-
Q 003363 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNY--------RGSLGFGEEALQSL- 643 (826)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~--------rG~~g~G~~~~~~~- 643 (826)
...+.+.+|+|++ .++.|+||.+||+... ..+||+++.+|+ +|+.|+|. +....
T Consensus 122 s~sf~~~i~lP~g---~~P~Pvii~~~~~~~~-------------~~~G~A~i~f~~~~va~d~~~gsrG~g~-f~~ly~ 184 (433)
T 4g4g_A 122 SISFSASIRKPSG---AGPFPAIIGIGGASIP-------------IPSNVATITFNNDEFGAQMGSGSRGQGK-FYDLFG 184 (433)
T ss_dssp EEEEEEEEECCSS---SCCEEEEEEESCCCSC-------------CCTTSEEEEECHHHHSCCSSGGGTTCSH-HHHHHC
T ss_pred eEEEEEEEECCCC---CCCccEEEEECCCccc-------------cCCCeEEEEeCCcccccccCCCcCCccc-cccccC
Confidence 3557999999974 6889999999974211 357999999997 44555665 33221
Q ss_pred -CCCCCcch--HHHHHHHHHHHHH----cCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhc----
Q 003363 644 -PGKVGSQD--VNDVLTAIDHVID----MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV---- 712 (826)
Q Consensus 644 -~~~~~~~~--~~D~~~~i~~l~~----~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~---- 712 (826)
...++... .-++..++++|.. ++.+|++||+++|||+||..++++++.. ++|+++|..++.++-....
T Consensus 185 ~~~~~gal~aWAWg~~raiDyL~~~~~~~~~VD~~RIgv~G~S~gG~~Al~aaA~D-~Ri~~vi~~~sg~~G~~~~R~~~ 263 (433)
T 4g4g_A 185 RDHSAGSLTAWAWGVDRLIDGLEQVGAQASGIDTKRLGVTGCSRNGKGAFITGALV-DRIALTIPQESGAGGAACWRISD 263 (433)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHCHHHHCEEEEEEEEEEETHHHHHHHHHHHHC-TTCSEEEEESCCTTTTSCHHHHH
T ss_pred CccchHHHHHHHHhHHHHHHHHHhccccCCCcChhHEEEEEeCCCcHHHHHHHhcC-CceEEEEEecCCCCchhhhhhch
Confidence 12344333 3589999999999 7889999999999999999999999975 5899999988754321110
Q ss_pred -----cCC--------CCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccc---cCCC-CCcEEEEEeCCCCCCCc
Q 003363 713 -----GTT--------DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISH---ISKV-KTPTIFLLGAQDLRVPV 775 (826)
Q Consensus 713 -----~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~---~~~i-~~PvLii~G~~D~~vp~ 775 (826)
+.. ....|+ ...+ ..|... ...-|..+ +.-+ ..|+|++.| +|..+++
T Consensus 264 ~~~~~Ge~v~~~~~~~ge~~Wf-~~~f-----~~y~~~---------~~~LPfD~heL~ALiAPRPlLv~~g-~D~w~~p 327 (433)
T 4g4g_A 264 QQKAAGANIQTAAQIITENPWF-SRNF-----DPHVNS---------ITSVPQDHHLLAALIVPRGLAVFEN-NIDWLGP 327 (433)
T ss_dssp HHHHTTCCCCCHHHHTTTCCCS-CTTT-----GGGTTC---------GGGSSCCGGGHHHHHTTSEEEEEEC-CCTTTCH
T ss_pred hhcccCcchhhhhcccCCcccc-chhh-----Hhhccc---------cccCCcCHHHHHHhhCCceEEEecC-CCCcCCc
Confidence 000 000111 0000 000000 00011111 1111 257999999 9988888
Q ss_pred HHHHHHHHHHH----hCCC--CEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 776 SNGLQYARALR----EKGV--ETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 776 ~~~~~~~~~l~----~~g~--~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
......+.+++ ..|. .+.+.+.++.+|+.. +. +....+.+||+++|+
T Consensus 328 ~g~~~a~~aa~~VY~~lGa~d~l~~~~~ggH~Hc~f-p~---~~r~~~~~F~~k~Lk 380 (433)
T 4g4g_A 328 VSTTGCMAAGRLIYKAYGVPNNMGFSLVGGHNHCQF-PS---SQNQDLNSYINYFLL 380 (433)
T ss_dssp HHHHHHHHHHHHHHHHHTCGGGEEEEECCSSCTTCC-CG---GGHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCccceEEEeeCCCCcccC-CH---HHHHHHHHHHHHHhC
Confidence 76554444332 2243 567766545456432 22 234788899999985
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.8e-11 Score=130.66 Aligned_cols=269 Identities=13% Similarity=0.086 Sum_probs=164.8
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
..+...+|||||++||..+.++ .+.+|+ .+.......... . ++..++|||||+.||..+.+...
T Consensus 65 ~~V~~~~~s~d~~~l~s~s~Dg-----~v~vWd~~~~~~~~~~~~~~---~------~v~~~~~sp~g~~lasg~~d~~i 130 (354)
T 2pbi_B 65 NKVLCMDWCKDKRRIVSSSQDG-----KVIVWDSFTTNKEHAVTMPC---T------WVMACAYAPSGCAIACGGLDNKC 130 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----EEEEEETTTCCEEEEEECSS---S------CCCEEEECTTSSEEEEESTTSEE
T ss_pred CeEEEEEECCCCCEEEEEeCCC-----eEEEEECCCCCcceEEecCC---C------CEEEEEECCCCCEEEEeeCCCCE
Confidence 4588999999999998876554 677884 333333332211 1 23789999999999987765533
Q ss_pred CCCCccCCCCC------CCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeC
Q 003363 232 SKPTFSLGSTK------GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 305 (826)
Q Consensus 232 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPD 305 (826)
.. |...... .......+........|.++....+++..+..|.+||+.+++..... ......+..+.|+|+
T Consensus 131 ~v--~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~~~~~~~ 207 (354)
T 2pbi_B 131 SV--YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF-HGHGADVLCLDLAPS 207 (354)
T ss_dssp EE--EECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECCC
T ss_pred EE--EEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE-cCCCCCeEEEEEEeC
Confidence 21 1111110 01111224444455677877556667777889999999988765431 223335567778774
Q ss_pred --CCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCC
Q 003363 306 --NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPD 382 (826)
Q Consensus 306 --g~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpD 382 (826)
|+. |+..+ .+..|.++|+ .+++ ...+..+...+....|+||
T Consensus 208 ~~g~~----l~sgs---------------~Dg~v~~wd~-----------------~~~~~~~~~~~h~~~v~~v~~~p~ 251 (354)
T 2pbi_B 208 ETGNT----FVSGG---------------CDKKAMVWDM-----------------RSGQCVQAFETHESDVNSVRYYPS 251 (354)
T ss_dssp SSCCE----EEEEE---------------TTSCEEEEET-----------------TTCCEEEEECCCSSCEEEEEECTT
T ss_pred CCCCE----EEEEe---------------CCCeEEEEEC-----------------CCCcEEEEecCCCCCeEEEEEeCC
Confidence 555 55544 3347889998 4444 4455666777889999999
Q ss_pred CCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEE
Q 003363 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 462 (826)
Q Consensus 383 G~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~ 462 (826)
|+.|+..+.+ ..|.+||+.++.... .... .. ....+..+.|+|||+.|+ +.
T Consensus 252 ~~~l~s~s~D-----------~~v~lwd~~~~~~~~----------~~~~--~~-----~~~~~~~~~~s~~g~~l~-~g 302 (354)
T 2pbi_B 252 GDAFASGSDD-----------ATCRLYDLRADREVA----------IYSK--ES-----IIFGASSVDFSLSGRLLF-AG 302 (354)
T ss_dssp SSEEEEEETT-----------SCEEEEETTTTEEEE----------EECC--TT-----CCSCEEEEEECTTSSEEE-EE
T ss_pred CCEEEEEeCC-----------CeEEEEECCCCcEEE----------EEcC--CC-----cccceeEEEEeCCCCEEE-EE
Confidence 9988866654 358889987643211 0100 00 001233568999998654 44
Q ss_pred EeCCeEEEEEEECCCCcEEE-ecCCCCCeeeEEEeecCCEEEEEE
Q 003363 463 IWGSSQVIISVNVSSGELLR-ITPAESNFSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 463 ~~~~~~~l~~vdl~tg~~~~-lt~~~~~~~~~~~s~dg~~l~~~~ 506 (826)
..++. +..+|+.+++... +......+....|+++++.|+...
T Consensus 303 ~~d~~--i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs 345 (354)
T 2pbi_B 303 YNDYT--INVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGS 345 (354)
T ss_dssp ETTSC--EEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred ECCCc--EEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEc
Confidence 44444 5555777776544 444444566678899988665444
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.7e-11 Score=129.99 Aligned_cols=271 Identities=8% Similarity=0.020 Sum_probs=159.0
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (826)
++|||+.++-. .....+.++++.+. .....+.... ..+...+|||||++|+.....+ ...
T Consensus 63 ~s~d~~~l~s~---------s~Dg~v~iWd~~~~-~~~~~~~~~~-----~~v~~~~~s~~~~~l~s~~~d~-----~v~ 122 (340)
T 1got_B 63 WGTDSRLLLSA---------SQDGKLIIWDSYTT-NKVHAIPLRS-----SWVMTCAYAPSGNYVACGGLDN-----ICS 122 (340)
T ss_dssp ECTTSSEEEEE---------ETTTEEEEEETTTC-CEEEEEECSS-----SCEEEEEECTTSSEEEEEETTC-----EEE
T ss_pred ECCCCCEEEEE---------eCCCcEEEEECCCC-CcceEeecCC-----ccEEEEEECCCCCEEEEEeCCC-----eEE
Confidence 47888766432 23446667665322 2222222222 4578899999999998876543 556
Q ss_pred Eec--CC-ceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceee
Q 003363 184 LWS--QS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (826)
Q Consensus 184 i~~--~~-~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (826)
+|+ .+ ...+......+..+.| ..+.|+||++ |+..+.+.... .|+............+........|.
T Consensus 123 iw~~~~~~~~~~~~~~~~~h~~~v------~~~~~~~~~~-l~s~s~d~~i~--~wd~~~~~~~~~~~~h~~~v~~~~~~ 193 (340)
T 1got_B 123 IYNLKTREGNVRVSRELAGHTGYL------SCCRFLDDNQ-IVTSSGDTTCA--LWDIETGQQTTTFTGHTGDVMSLSLA 193 (340)
T ss_dssp EEETTTCSBSCEEEEEEECCSSCE------EEEEEEETTE-EEEEETTSCEE--EEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred EEECccCCCcceeEEEecCCCccE------EEEEECCCCc-EEEEECCCcEE--EEECCCCcEEEEEcCCCCceEEEEEC
Confidence 662 11 1112221112222333 7889999986 66666655433 33322222222223344455567788
Q ss_pred cCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEE
Q 003363 261 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 340 (826)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~ 340 (826)
++....+++..+..|.+||+.+++..... ......+..++|+|||+. |+..+ .+..|.++
T Consensus 194 ~~~~~l~sg~~d~~v~~wd~~~~~~~~~~-~~h~~~v~~v~~~p~~~~----l~s~s---------------~d~~v~iw 253 (340)
T 1got_B 194 PDTRLFVSGACDASAKLWDVREGMCRQTF-TGHESDINAICFFPNGNA----FATGS---------------DDATCRLF 253 (340)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCSEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTSCEEEE
T ss_pred CCCCEEEEEeCCCcEEEEECCCCeeEEEE-cCCcCCEEEEEEcCCCCE----EEEEc---------------CCCcEEEE
Confidence 87544556667789999999888755431 334456788999999997 76665 33468888
Q ss_pred EcccccchhhhhhhhcCCCCCCcc-eecCCC--CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCC
Q 003363 341 RVSLYKSEASELELKESSSEDLPV-VNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (826)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~--~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~ 417 (826)
|+ ..++. ..+... ...+....|||||+.|+..+.+ ..|.+||+.++...
T Consensus 254 d~-----------------~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-----------~~i~vwd~~~~~~~ 305 (340)
T 1got_B 254 DL-----------------RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-----------FNCNVWDALKADRA 305 (340)
T ss_dssp ET-----------------TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT-----------SEEEEEETTTCCEE
T ss_pred EC-----------------CCCcEEEEEccCCcccceEEEEECCCCCEEEEECCC-----------CeEEEEEcccCcEe
Confidence 87 33332 222221 2346788999999988766544 46899998765432
Q ss_pred CcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003363 418 SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (826)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (826)
....+ +...+..+.|+|||+.| ++...++...||
T Consensus 306 ~~~~~-------------------h~~~v~~~~~s~dg~~l-~s~s~D~~i~iW 339 (340)
T 1got_B 306 GVLAG-------------------HDNRVSCLGVTDDGMAV-ATGSWDSFLKIW 339 (340)
T ss_dssp EEEEC-------------------CSSCEEEEEECTTSSCE-EEEETTSCEEEE
T ss_pred eEeec-------------------CCCcEEEEEEcCCCCEE-EEEcCCccEEec
Confidence 11100 11234467899999855 455556666665
|
| >3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-12 Score=136.76 Aligned_cols=215 Identities=12% Similarity=0.041 Sum_probs=124.6
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHH-HHHHHcCC
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI-DHVIDMGL 667 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i-~~l~~~~~ 667 (826)
.+..|.||++||.........|...+..| ..||.|+++|+||. |.+. .....++++.+.+ +.+.+.
T Consensus 78 ~~~~~~lv~lhG~~~~~~~~~~~~~~~~L-~~~~~v~~~d~~G~---G~~~-------~~~~~~~~~~~~~~~~l~~~-- 144 (319)
T 3lcr_A 78 GQLGPQLILVCPTVMTTGPQVYSRLAEEL-DAGRRVSALVPPGF---HGGQ-------ALPATLTVLVRSLADVVQAE-- 144 (319)
T ss_dssp CCSSCEEEEECCSSTTCSGGGGHHHHHHH-CTTSEEEEEECTTS---STTC-------CEESSHHHHHHHHHHHHHHH--
T ss_pred CCCCCeEEEECCCCcCCCHHHHHHHHHHh-CCCceEEEeeCCCC---CCCC-------CCCCCHHHHHHHHHHHHHHh--
Confidence 34568899999942222355788888888 78999999999994 4321 0111233333322 233222
Q ss_pred CCCCcEEEEEecchHHHHHHHHHhC---CCceeEEEecCCccchhhhccCCCCCCch--hhhhccCcCCccCCCCCC-hh
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCNLALMVGTTDIPDWC--YVESYGSKGKDSFTESPS-VE 741 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~~---p~~~~a~v~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~ 741 (826)
.+.+++.|+|||+||.++..++.++ |+.++++|+.++....... .....+. ........ ...+..... ..
T Consensus 145 ~~~~~~~lvGhS~Gg~vA~~~A~~~~~~~~~v~~lvl~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 220 (319)
T 3lcr_A 145 VADGEFALAGHSSGGVVAYEVARELEARGLAPRGVVLIDSYSFDGDG---GRPEELFRSALNERFVE-YLRLTGGGNLSQ 220 (319)
T ss_dssp HTTSCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCCCCSSC---CHHHHHHHHHHHHHHHH-HHHHHCCCCHHH
T ss_pred cCCCCEEEEEECHHHHHHHHHHHHHHhcCCCccEEEEECCCCCCccc---hhhHHHHHHHHHHHHhh-hhcccCCCchhH
Confidence 1236899999999999999999887 8889999988764321100 0000000 00000000 000000000 01
Q ss_pred h---HHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 003363 742 D---LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIG 818 (826)
Q Consensus 742 ~---~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~ 818 (826)
. ...+...........+++|+|+++|++ ..+++.....+.+.+.. ..+++++++..|.+..++...++...|.
T Consensus 221 ~l~~~~~~~~~~~~~~~~~i~~PvLli~g~~-~~~~~~~~~~~~~~~~~---~~~~~~~~g~H~~~~~~~~~~~va~~i~ 296 (319)
T 3lcr_A 221 RITAQVWCLELLRGWRPEGLTAPTLYVRPAQ-PLVEQEKPEWRGDVLAA---MGQVVEAPGDHFTIIEGEHVASTAHIVG 296 (319)
T ss_dssp HHHHHHHHHHHTTTCCCCCCSSCEEEEEESS-CSSSCCCTHHHHHHHHT---CSEEEEESSCTTGGGSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcCCCEEEEEeCC-CCCCcccchhhhhcCCC---CceEEEeCCCcHHhhCcccHHHHHHHHH
Confidence 1 111111111112257899999999998 56666666777776654 3678888875555554466778999999
Q ss_pred HHHHHH
Q 003363 819 LWFKKY 824 (826)
Q Consensus 819 ~w~~~~ 824 (826)
+||.+.
T Consensus 297 ~fL~~~ 302 (319)
T 3lcr_A 297 DWLREA 302 (319)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999874
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-12 Score=137.25 Aligned_cols=149 Identities=14% Similarity=0.105 Sum_probs=100.3
Q ss_pred CCCCCCcEEEEEecchHHHHHHHHHhCCCcee-EEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHH
Q 003363 666 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFV-AAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLT 744 (826)
Q Consensus 666 ~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~-a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (826)
..+|++||+|+|+|+||++++.++..+|++|+ ++++.++...... .+.. ....+.. .+...+..+...
T Consensus 6 ~~iD~~RI~v~G~S~GG~mA~~~a~~~p~~fa~g~~v~ag~p~~~~----~~~~---~~~~~~~----~~~~~~~~~~~~ 74 (318)
T 2d81_A 6 FNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCA----RNQY---YTSCMYN----GYPSITTPTANM 74 (318)
T ss_dssp CCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTT----SSSC---GGGGSTT----CCCCCHHHHHHH
T ss_pred cCcCcceEEEEEECHHHHHHHHHHHHCchhhhccceEEeccccccc----chHH---HHHHhhc----cCCCCCCHHHHH
Confidence 34899999999999999999999999999998 8776665321100 0000 0000000 000011112222
Q ss_pred HHhhcCcccccCCCC-CcEEEEEeCCCCCCCcHHHHHHHHHHHhCCC--CEEEEEeCCCCCCCCCCCC------------
Q 003363 745 RFHSKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGV--ETKVIVFPNDVHGIERPQS------------ 809 (826)
Q Consensus 745 ~~~~~sp~~~~~~i~-~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~--~~~~~~~p~~~H~~~~~~~------------ 809 (826)
.....+++..+.+++ +|+||+||++|.+||++++++++++|++.+. +++++.+++++|.+.....
T Consensus 75 ~~~~~~~i~~~~~l~~~Pvli~HG~~D~vVP~~~s~~~~~~L~~~g~~~~ve~~~~~g~gH~~~~~~~~~~~~~c~~~~~ 154 (318)
T 2d81_A 75 KSWSGNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANVSYVTTTGAVHTFPTDFNGAGDNSCSLSTS 154 (318)
T ss_dssp HHHBTTTBCCGGGGGGCEEEEEEETTCCSSCHHHHHHHHHHHTTTSCGGGEEEEEETTCCSSEEESSCCTTCCCTTSCCT
T ss_pred HHhhcccCChhHcCCCCcEEEEeCCCCCCcCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCCCccCCcccCccccccCCC
Confidence 222224555555554 6899999999999999999999999998883 7999999999998653322
Q ss_pred ------HHHHHHHHHHHHHHHc
Q 003363 810 ------DFESFLNIGLWFKKYC 825 (826)
Q Consensus 810 ------~~~~~~~i~~w~~~~l 825 (826)
..+...+|++||...|
T Consensus 155 pyi~~~~~d~~~~i~~ff~g~~ 176 (318)
T 2d81_A 155 PYISNCNYDGAGAALKWIYGSL 176 (318)
T ss_dssp TCEEECSSCHHHHHHHHHHSSC
T ss_pred CcccCCCChHHHHHHHHHhccC
Confidence 2567788999996543
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.35 E-value=5.6e-11 Score=125.32 Aligned_cols=263 Identities=11% Similarity=0.053 Sum_probs=158.8
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
..+...+|||||+.|+.....+ .+.+|+ .+...+..... .+.| ..+.|+||++.|+..+.+...
T Consensus 14 ~~V~~~~fsp~~~~l~s~~~dg-----~v~lWd~~~~~~~~~~~~~---~~~v------~~~~~~~~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTLYSG-----RVELWNYETQVEVRSIQVT---ETPV------RAGKFIARKNWIIVGSDDFRI 79 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTS-----EEEEEETTTTEEEEEEECC---SSCE------EEEEEEGGGTEEEEEETTSEE
T ss_pred CceEEEEECCCCCEEEEEcCCC-----cEEEEECCCCceeEEeecc---CCcE------EEEEEeCCCCEEEEECCCCEE
Confidence 4588999999999999876543 577884 33333333221 1222 788999999999998877654
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc-eEeccCCCCCCccceEEEeeC-CCCC
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPL-NEGL 309 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSPD-g~~~ 309 (826)
+ .|+............+........|.++....+++..+..|.+||+.++. ..... ......+..++|+|+ ++.
T Consensus 80 ~--vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~- 155 (304)
T 2ynn_A 80 R--VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF-EGHEHFVMCVAFNPKDPST- 155 (304)
T ss_dssp E--EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEE-CCCCSCEEEEEECTTCTTE-
T ss_pred E--EEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhh-cccCCcEEEEEECCCCCCE-
Confidence 3 33332222223334556666677888885555667778899999998773 33321 233446788999995 554
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecC-CCCccccCceecC--CCCEE
Q 003363 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSP--DGKFL 386 (826)
Q Consensus 310 ~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt-~~~~~~~~p~~Sp--DG~~l 386 (826)
|+..+ .+..|.++|+. .......+. .+...+....|+| |+++|
T Consensus 156 ---l~sgs---------------~D~~v~iwd~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 201 (304)
T 2ynn_A 156 ---FASGC---------------LDRTVKVWSLG----------------QSTPNFTLTTGQERGVNYVDYYPLPDKPYM 201 (304)
T ss_dssp ---EEEEE---------------TTSEEEEEETT----------------CSSCSEEEECCCTTCEEEEEECCSTTCCEE
T ss_pred ---EEEEe---------------CCCeEEEEECC----------------CCCccceeccCCcCcEEEEEEEEcCCCCEE
Confidence 44444 33478888872 222223333 2334455667765 77887
Q ss_pred EEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCC
Q 003363 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 466 (826)
Q Consensus 387 ~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~ 466 (826)
+..+.+ ..|.+||+.++.......+ +...+..+.|+|+++.| ++...++
T Consensus 202 ~s~s~D-----------~~i~iWd~~~~~~~~~~~~-------------------h~~~v~~~~~~p~~~~l-~s~s~Dg 250 (304)
T 2ynn_A 202 ITASDD-----------LTIKIWDYQTKSCVATLEG-------------------HMSNVSFAVFHPTLPII-ISGSEDG 250 (304)
T ss_dssp EEEETT-----------SEEEEEETTTTEEEEEEEC-------------------CSSCEEEEEECSSSSEE-EEEETTS
T ss_pred EEEcCC-----------CeEEEEeCCCCccceeeCC-------------------CCCCEEEEEECCCCCEE-EEEcCCC
Confidence 766544 4689999877543211100 11133467899999854 5555555
Q ss_pred eEEEEEEECCCCcEEEecCC-CCCeeeEEEeecCCE
Q 003363 467 SQVIISVNVSSGELLRITPA-ESNFSWSLLTLDGDN 501 (826)
Q Consensus 467 ~~~l~~vdl~tg~~~~lt~~-~~~~~~~~~s~dg~~ 501 (826)
.. ..+|+.+++..+.... ........++++++.
T Consensus 251 ~i--~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (304)
T 2ynn_A 251 TL--KIWNSSTYKVEKTLNVGLERSWCIATHPTGRK 284 (304)
T ss_dssp CE--EEEETTTCCEEEEECCSSSSEEEEEECTTCGG
T ss_pred eE--EEEECCCCceeeeccCCCccEEEEEECCCCCc
Confidence 54 4558888876654433 233334456676654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.35 E-value=6e-11 Score=129.40 Aligned_cols=290 Identities=10% Similarity=0.050 Sum_probs=169.4
Q ss_pred cccEEEEeCCCC-CeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecC-CCCeEEEEeecC
Q 003363 154 TGASAVVPSPSG-SKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNS-DETLIAYVAEEP 229 (826)
Q Consensus 154 ~~~~~~~~SPdG-~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSP-Dg~~ia~~~~~~ 229 (826)
..+...+|+||| +.|+.....+ .+.+| ..++....... .+..+.| ..+.|+| |++.|+..+.+.
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~-~~h~~~v------~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGG-----DIILWDYDVQNKTSFIQG-MGPGDAI------TGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTS-----CEEEEETTSTTCEEEECC-CSTTCBE------EEEEEETTEEEEEEEEETTT
T ss_pred CCEEEEEECCCCCCEEEEEcCCC-----eEEEEeCCCcccceeeec-CCcCCce------eEEEeCCCCCCEEEEEeCCC
Confidence 358889999999 7777765543 45666 23344444332 1232333 7999999 678887777665
Q ss_pred CCCCCCccCCCCCCCCCC---ccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCC
Q 003363 230 SPSKPTFSLGSTKGGSSD---KDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLN 306 (826)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg 306 (826)
... .|+... ...... ..+..+.....|.++....+++.....|++||+.+..+..+ ......+..++|+|++
T Consensus 142 ~i~--iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~h~~~v~~~~~~~~~ 216 (383)
T 3ei3_B 142 ATT--LRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKE--KLHKAKVTHAEFNPRC 216 (383)
T ss_dssp EEE--EEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEE--ECSSSCEEEEEECSSC
T ss_pred EEE--EEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEe--ccCCCcEEEEEECCCC
Confidence 433 232211 111111 11224445677888865566666778999999976666666 3444567899999999
Q ss_pred CCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecC-CCCE
Q 003363 307 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSP-DGKF 385 (826)
Q Consensus 307 ~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~Sp-DG~~ 385 (826)
+. +++++. .+..|.++|+.... ..+.......+...+....|+| ||++
T Consensus 217 ~~----~l~s~~--------------~d~~i~iwd~~~~~-------------~~~~~~~~~~~~~~v~~~~~s~~~~~~ 265 (383)
T 3ei3_B 217 DW----LMATSS--------------VDATVKLWDLRNIK-------------DKNSYIAEMPHEKPVNAAYFNPTDSTK 265 (383)
T ss_dssp TT----EEEEEE--------------TTSEEEEEEGGGCC-------------STTCEEEEEECSSCEEEEEECTTTSCE
T ss_pred CC----EEEEEe--------------CCCEEEEEeCCCCC-------------cccceEEEecCCCceEEEEEcCCCCCE
Confidence 96 655552 33478889983100 1133333335667788999999 9999
Q ss_pred EEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEE--
Q 003363 386 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI-- 463 (826)
Q Consensus 386 l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~-- 463 (826)
|+..+.+ ..|.+||+.++........... ..+. + .......|+|++..+.+...
T Consensus 266 l~~~~~d-----------~~i~iwd~~~~~~~~~~~~~~~----------~~~~--~-~~~~~~~~~p~~~~~~~~~s~d 321 (383)
T 3ei3_B 266 LLTTDQR-----------NEIRVYSSYDWSKPDQIIIHPH----------RQFQ--H-LTPIKATWHPMYDLIVAGRYPD 321 (383)
T ss_dssp EEEEESS-----------SEEEEEETTBTTSCSEEEECCB----------CCCT--T-SCCCCCEECSSSSEEEEECBCC
T ss_pred EEEEcCC-----------CcEEEEECCCCccccccccccc----------cccc--c-ccceEEeccCCCCceEEEecCC
Confidence 8876644 4699999987665321111100 0000 0 01112356666554433321
Q ss_pred ----eCCeEEEEEEECCCCcEEEecCC---CCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEee
Q 003363 464 ----WGSSQVIISVNVSSGELLRITPA---ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 520 (826)
Q Consensus 464 ----~~~~~~l~~vdl~tg~~~~lt~~---~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 520 (826)
...+..|..+|+.+++....... ...+....|++++..|+.. + + ..|.+.++
T Consensus 322 g~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~-s--d--~~i~iw~~ 380 (383)
T 3ei3_B 322 DQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASG-M--G--FNILIWNR 380 (383)
T ss_dssp TTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEE-E--T--TEEEEEEC
T ss_pred cccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEe-c--C--CcEEEEec
Confidence 12345677789888876544332 2234444789999866555 3 2 34666554
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=6.8e-11 Score=130.48 Aligned_cols=266 Identities=12% Similarity=0.073 Sum_probs=167.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
..+...+|+|+|+.|+..+..+ .+.+|+ .++..+... +..+.| ..++|+|||+.|+..+.+...
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg-----~i~vwd~~~~~~~~~l~---~h~~~V------~~v~~~~~~~~l~sgs~D~~i 174 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDA-----TIKVWDYETGDFERTLK---GHTDSV------QDISFDHSGKLLASCSADMTI 174 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSS-----CEEEEETTTCCCCEEEC---CCSSCE------EEEEECTTSSEEEEEETTSCC
T ss_pred CcEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEe---ccCCcE------EEEEEcCCCCEEEEEeCCCeE
Confidence 4588999999999998876543 466773 444444332 222333 789999999999998887765
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
. .|+............+...+....|.++....+++..+..|.+||+.+++..... ......+..+.|+|||+.
T Consensus 175 ~--iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~g~~--- 248 (410)
T 1vyh_C 175 K--LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTL--- 248 (410)
T ss_dssp C--EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSE---
T ss_pred E--EEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eCCCccEEEEEECCCCCE---
Confidence 5 3332222222233344455556778888555566777899999999988754321 233345678899999996
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCC--------
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPD-------- 382 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpD-------- 382 (826)
|+..+ .+..|.++|+ .+++ ...+..+...+....|+|+
T Consensus 249 -l~s~s---------------~D~~v~vwd~-----------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 295 (410)
T 1vyh_C 249 -IASCS---------------NDQTVRVWVV-----------------ATKECKAELREHRHVVECISWAPESSYSSISE 295 (410)
T ss_dssp -EEEEE---------------TTSCEEEEET-----------------TTCCEEEEECCCSSCEEEEEECCSCGGGGGGG
T ss_pred -EEEEc---------------CCCeEEEEEC-----------------CCCceeeEecCCCceEEEEEEcCcccccchhh
Confidence 66655 3346888887 4443 3455666667778889987
Q ss_pred ------------CCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCc
Q 003363 383 ------------GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 450 (826)
Q Consensus 383 ------------G~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 450 (826)
|.+|+..+.+ ..|.+||+.++.......+ +...+..+.
T Consensus 296 ~~~~~~~~~~~~g~~l~sgs~D-----------~~i~iwd~~~~~~~~~~~~-------------------h~~~v~~v~ 345 (410)
T 1vyh_C 296 ATGSETKKSGKPGPFLLSGSRD-----------KTIKMWDVSTGMCLMTLVG-------------------HDNWVRGVL 345 (410)
T ss_dssp CCSCC-------CCEEEEEETT-----------SEEEEEETTTTEEEEEEEC-------------------CSSCEEEEE
T ss_pred hccccccccCCCCCEEEEEeCC-----------CeEEEEECCCCceEEEEEC-------------------CCCcEEEEE
Confidence 5556544433 4689999877543211100 111344678
Q ss_pred cccCCCEEEEEEEeCCeEEEEEEECCCCcE-EEecCCCCCeeeEEEeecCCEEEEE
Q 003363 451 WLSDGCTMLLSSIWGSSQVIISVNVSSGEL-LRITPAESNFSWSLLTLDGDNIIAV 505 (826)
Q Consensus 451 ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~-~~lt~~~~~~~~~~~s~dg~~l~~~ 505 (826)
|+|+|+.|+ +...++. |..+|+.+++. ..+......+....|++++..++..
T Consensus 346 ~~~~g~~l~-s~s~D~~--i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg 398 (410)
T 1vyh_C 346 FHSGGKFIL-SCADDKT--LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTG 398 (410)
T ss_dssp ECSSSSCEE-EEETTTE--EEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEE
T ss_pred EcCCCCEEE-EEeCCCe--EEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEE
Confidence 999998664 4444454 44557666653 4444444455666788887755543
|
| >4fol_A FGH, S-formylglutathione hydrolase; D-type esterase, oxidation sensor motif, esterase activity activation, esterase activity inhibition; 2.07A {Saccharomyces cerevisiae} PDB: 1pv1_A 3c6b_A* 4flm_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.4e-12 Score=134.05 Aligned_cols=233 Identities=12% Similarity=0.107 Sum_probs=134.1
Q ss_pred CCeeEEEEEEecCCCC-----CCCCCcEEEEEcCCCCCCCCccchH---HHHHHHHCCcEEEEECCC--CCCC-------
Q 003363 572 AQKPFEAIFVSSSHKK-----DCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYR--GSLG------- 634 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~-----~~~~~P~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vl~~d~r--G~~g------- 634 (826)
-+.++...+|+|+++. .++++|+|+++||.+.. ...|.. ..+.+++.|.+++.++-. +..-
T Consensus 24 l~~~~~~~VyLPp~y~~~~~~~~~~~PVLYlLhG~~~~--~~~w~~~~~~~~~~~~~~~~~v~p~~~p~~~~~~~~~~~~ 101 (299)
T 4fol_A 24 TKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCT--PDNASEKAFWQFQADKYGFAIVFPDTSPRGDEVANDPEGS 101 (299)
T ss_dssp TSSEEEEEEEECGGGGCC------CBCEEEEECCTTCC--HHHHHHHSCHHHHHHHHTCEEEEECSSCCSTTSCCCTTCC
T ss_pred cCCceEEEEEcCCCCCccccccCCCcCEEEEECCCCCC--hHHHHHhchHhHHHHHcCchhhccCCCcceeecCCCcccc
Confidence 3567888999998763 35689999999997654 334432 334567789999999842 1100
Q ss_pred --Cc--hhhhhcC-------CCCCCcchHHHHHHHHHHHHH----cCCCCCCcEEEEEecchHHHHHHHHHhC--CCcee
Q 003363 635 --FG--EEALQSL-------PGKVGSQDVNDVLTAIDHVID----MGLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFV 697 (826)
Q Consensus 635 --~G--~~~~~~~-------~~~~~~~~~~D~~~~i~~l~~----~~~~d~~rv~l~G~S~GG~~a~~~a~~~--p~~~~ 697 (826)
.| ..+.... ...+...-.+++...|+.-.. +...+.++.+|.|+||||+.|+.++.++ |+.+.
T Consensus 102 ~~~g~~~~~y~d~~~~p~~~~~~~~~~l~~EL~~~i~~~f~~~~~r~~~~r~~~~i~G~SMGG~gAl~~al~~~~~~~~~ 181 (299)
T 4fol_A 102 WDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGISMGGYGAICGYLKGYSGKRYK 181 (299)
T ss_dssp SSSBTTBCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEBTHHHHHHHHHHHHTGGGTCCS
T ss_pred cccccCCccccccccCccccCccHHHHHHHHhHHHHHHhcccccccccccccceEEEecCchHHHHHHHHHhCCCCCceE
Confidence 00 0000000 001111123344444332221 1112456899999999999999999985 67889
Q ss_pred EEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCccccc---CCC-CCcEEEEEeCCCCCC
Q 003363 698 AAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHI---SKV-KTPTIFLLGAQDLRV 773 (826)
Q Consensus 698 a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~---~~i-~~PvLii~G~~D~~v 773 (826)
++.+.+|+++.... .|..... . .+.+ .....+...++...+ .+. ..+++|-+|+.|.+.
T Consensus 182 ~~~s~s~~~~p~~~-------~~~~~~~-~-----~~~g----~~~~~~~~~d~~~l~~~~~~~~~~~i~id~G~~D~f~ 244 (299)
T 4fol_A 182 SCSAFAPIVNPSNV-------PWGQKAF-K-----GYLG----EEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFL 244 (299)
T ss_dssp EEEEESCCCCGGGS-------HHHHHHH-H-----HHTC---------CGGGCHHHHGGGSCCCTTCCEEEEEETTCTTH
T ss_pred EEEecccccCcccc-------ccccccc-c-----cccc----cchhhhhhcCHHHHHHhcccCCCCceEEEecCCCcch
Confidence 99999998764321 1111000 0 0000 111122333333322 222 367999999999876
Q ss_pred CcH-HHHHHHHHHHhCCCC--EEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 774 PVS-NGLQYARALREKGVE--TKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 774 p~~-~~~~~~~~l~~~g~~--~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
... ....+.++++++|.+ +++...||.+|.+... ...++..++|+.++|+
T Consensus 245 ~~~l~~~~f~~a~~~~g~~~~~~~r~~~GydHsy~f~---~~fi~dhl~fha~~Lg 297 (299)
T 4fol_A 245 EEHLKPELLLEAVKATSWQDYVEIKKVHGFDHSYYFV---STFVPEHAEFHARNLG 297 (299)
T ss_dssp HHHTCTHHHHHHHTTSTTTTCEEEEEETTCCSSHHHH---HHHHHHHHHHHHHHTT
T ss_pred hhhcCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHH---HHHHHHHHHHHHHhcC
Confidence 321 135688889888865 7888999989975321 2345667888888875
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.6e-11 Score=133.44 Aligned_cols=291 Identities=11% Similarity=-0.002 Sum_probs=168.4
Q ss_pred EEeCCCCCeEEEEecCCC------------CCCeEEEEec-CCceeEEE--ecCCCccccccCCCcccceeecCCCCeEE
Q 003363 159 VVPSPSGSKLLVVRNPEN------------ESPIQFELWS-QSQLEKEF--HVPQTVHGSVYADGWFEGISWNSDETLIA 223 (826)
Q Consensus 159 ~~~SPdG~~la~~~~~~~------------~~~~~~~i~~-~~~~~~~~--~~~~~~~g~v~~~~~~~~~~wSPDg~~ia 223 (826)
|.|+|+++.++++..... +...++.++. ++....+. ...... ..++|+| ++.++
T Consensus 69 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~----------~~~~~s~-~~~~~ 137 (433)
T 3bws_A 69 PVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQP----------KSVRFID-NTRLA 137 (433)
T ss_dssp ECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCB----------CCCEESS-SSEEE
T ss_pred eeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCc----------eEEEEeC-CCeEE
Confidence 349999888876654321 1124555442 23222222 222222 5889999 55566
Q ss_pred EEeecCCCCCCCccCCCCCCCC-----CCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccc
Q 003363 224 YVAEEPSPSKPTFSLGSTKGGS-----SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVG 298 (826)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~ 298 (826)
+.+.... ....|+........ ....+........|.++....+++.....|++||+++++..... ......+.
T Consensus 138 ~~~~~~~-~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~-~~~~~~~~ 215 (433)
T 3bws_A 138 IPLLEDE-GMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATV-DLTGKWSK 215 (433)
T ss_dssp EEBTTSS-SEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEE-ECSSSSEE
T ss_pred EEeCCCC-eEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEE-cCCCCCee
Confidence 6553321 11223322111111 11122223334556655322334445689999999988765431 22344677
Q ss_pred eEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCce
Q 003363 299 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPR 378 (826)
Q Consensus 299 ~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~ 378 (826)
.++|+|||+. |++.+. ....|+++|+ .+++...............
T Consensus 216 ~~~~~~~~~~----l~~~~~--------------~~~~i~~~d~-----------------~~~~~~~~~~~~~~~~~~~ 260 (433)
T 3bws_A 216 ILLYDPIRDL----VYCSNW--------------ISEDISVIDR-----------------KTKLEIRKTDKIGLPRGLL 260 (433)
T ss_dssp EEEEETTTTE----EEEEET--------------TTTEEEEEET-----------------TTTEEEEECCCCSEEEEEE
T ss_pred EEEEcCCCCE----EEEEec--------------CCCcEEEEEC-----------------CCCcEEEEecCCCCceEEE
Confidence 8999999997 766552 2237999998 5555544444445578899
Q ss_pred ecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEE
Q 003363 379 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 458 (826)
Q Consensus 379 ~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l 458 (826)
|+|||++|+..+...... ......|++||+.+++........ ..+..++|+|||+.+
T Consensus 261 ~~~~g~~l~~~~~~~~~~---~~~dg~i~~~d~~~~~~~~~~~~~--------------------~~~~~~~~~~~g~~l 317 (433)
T 3bws_A 261 LSKDGKELYIAQFSASNQ---ESGGGRLGIYSMDKEKLIDTIGPP--------------------GNKRHIVSGNTENKI 317 (433)
T ss_dssp ECTTSSEEEEEEEESCTT---CSCCEEEEEEETTTTEEEEEEEEE--------------------ECEEEEEECSSTTEE
T ss_pred EcCCCCEEEEEECCCCcc---ccCCCeEEEEECCCCcEEeeccCC--------------------CCcceEEECCCCCEE
Confidence 999999988777543110 012357999998875432111000 022356899999988
Q ss_pred EEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCC-----------CeEEEEeecc
Q 003363 459 LLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDV-----------PQVKYGYFVD 522 (826)
Q Consensus 459 ~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p-----------~~l~~~~~~~ 522 (826)
+++...+ ..++.+|+.+++...............++++++.+++........ ..|++.++.+
T Consensus 318 ~~~~~~~--~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 318 YVSDMCC--SKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp EEEETTT--TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred EEEecCC--CEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence 7775433 467777888888766555444556678899998887776554332 2677776543
|
| >3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG, P structure initiative; 1.80A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.4e-12 Score=130.76 Aligned_cols=210 Identities=14% Similarity=0.072 Sum_probs=127.7
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcE---E----------EEECCCCCCCCchhhhhc---CCCCCCcchHHHHH
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYS---L----------LIVNYRGSLGFGEEALQS---LPGKVGSQDVNDVL 656 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~---V----------l~~d~rG~~g~G~~~~~~---~~~~~~~~~~~D~~ 656 (826)
+.||++||.+.+ ...|...+..|+++++. + +.+|-++.+..+...... ..........+|+.
T Consensus 4 ~pvvllHG~~~~--~~~~~~l~~~L~~~~~~~~~~~~~~v~~~G~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~ 81 (254)
T 3ds8_A 4 IPIILIHGSGGN--ASSLDKMADQLMNEYRSSNEALTMTVNSEGKIKFEGKLTKDAKRPIIKFGFEQNQATPDDWSKWLK 81 (254)
T ss_dssp CCEEEECCTTCC--TTTTHHHHHHHHHTTCCCCCEEEEEEETTTEEEEESCCCTTCSSCEEEEEESSTTSCHHHHHHHHH
T ss_pred CCEEEECCCCCC--cchHHHHHHHHHHhcCCCceEEEEEEcCCCeEEEEEEeccCCCCCEEEEEecCCCCCHHHHHHHHH
Confidence 458899997655 45688889999988763 2 333322111111110000 00001112255666
Q ss_pred HHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC-----ceeEEEecCCccchhhhccCCCCCCchhhhhccCcCC
Q 003363 657 TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 731 (826)
Q Consensus 657 ~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (826)
++++.+.+.. ..+++.++||||||.+++.++.++|+ +++++|++++..+........ ....
T Consensus 82 ~~i~~l~~~~--~~~~~~lvGHS~Gg~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~~--------~~~~---- 147 (254)
T 3ds8_A 82 IAMEDLKSRY--GFTQMDGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIGSPFNDLDPNDNG--------MDLS---- 147 (254)
T ss_dssp HHHHHHHHHH--CCSEEEEEEETHHHHHHHHHHHHSTTCTTSCEEEEEEEESCCTTCSCHHHHC--------SCTT----
T ss_pred HHHHHHHHHh--CCCceEEEEECccHHHHHHHHHHccCCccccceeeEEEEcCCcCcccccccc--------cccc----
Confidence 6778877763 33789999999999999999999998 899999998866532211000 0000
Q ss_pred ccCCCCCC-hhhHHHHhhcCcccccCCCCCcEEEEEeC------CCCCCCcHHHHHHHHHHHhCCCCEEEEEeCC--CCC
Q 003363 732 DSFTESPS-VEDLTRFHSKSPISHISKVKTPTIFLLGA------QDLRVPVSNGLQYARALREKGVETKVIVFPN--DVH 802 (826)
Q Consensus 732 ~~~~~~~~-~~~~~~~~~~sp~~~~~~i~~PvLii~G~------~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~--~~H 802 (826)
+...+. ......+... ...+.+ ++|+|.|+|. .|..||+..++.+...++......+.+.+.+ ++|
T Consensus 148 --~~~~p~~~~~~~~~~~~--~~~~~~-~~~vl~I~G~~~~~~~~Dg~Vp~~ss~~l~~~~~~~~~~~~~~~~~g~~a~H 222 (254)
T 3ds8_A 148 --FKKLPNSTPQMDYFIKN--QTEVSP-DLEVLAIAGELSEDNPTDGIVPTISSLATRLFMPGSAKAYIEDIQVGEDAVH 222 (254)
T ss_dssp --CSSCSSCCHHHHHHHHT--GGGSCT-TCEEEEEEEESBTTBCBCSSSBHHHHTGGGGTSBTTBSEEEEEEEESGGGCG
T ss_pred --cccCCcchHHHHHHHHH--HhhCCC-CcEEEEEEecCCCCCCCCcEeeHHHHHHHHHHhhccCcceEEEEEeCCCCch
Confidence 001111 1111222111 112222 6899999999 9999999999888777776545566666766 669
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHc
Q 003363 803 GIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 803 ~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
..... +. ++.+.+..||+++.
T Consensus 223 s~l~~-~~-~v~~~i~~fL~~~~ 243 (254)
T 3ds8_A 223 QTLHE-TP-KSIEKTYWFLEKFK 243 (254)
T ss_dssp GGGGG-SH-HHHHHHHHHHHTCC
T ss_pred hcccC-CH-HHHHHHHHHHHHhc
Confidence 76544 33 58889999998764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-11 Score=147.73 Aligned_cols=238 Identities=9% Similarity=-0.003 Sum_probs=148.7
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003363 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (826)
Q Consensus 102 ~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (826)
-.+||||+.++... ....+.++++.+ +.....++... ..+..++|||||++|++....+ .
T Consensus 19 i~~sp~~~~la~~~---------~~g~v~iwd~~~-~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~dg-----~ 78 (814)
T 3mkq_A 19 IDFHPTEPWVLTTL---------YSGRVEIWNYET-QVEVRSIQVTE-----TPVRAGKFIARKNWIIVGSDDF-----R 78 (814)
T ss_dssp EEECSSSSEEEEEE---------TTSEEEEEETTT-TEEEEEEECCS-----SCEEEEEEEGGGTEEEEEETTS-----E
T ss_pred EEECCCCCEEEEEe---------CCCEEEEEECCC-CceEEEEecCC-----CcEEEEEEeCCCCEEEEEeCCC-----e
Confidence 34589999888753 223566666532 22233444333 4689999999999999886643 5
Q ss_pred EEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCccee
Q 003363 182 FELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (826)
Q Consensus 182 ~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (826)
+.+|+ .++...... ...+.| ..+.|||||++|+..+.+.....+.+... .........+........|
T Consensus 79 i~vw~~~~~~~~~~~~---~~~~~v------~~~~~s~~~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~v~~~~~ 148 (814)
T 3mkq_A 79 IRVFNYNTGEKVVDFE---AHPDYI------RSIAVHPTKPYVLSGSDDLTVKLWNWENN-WALEQTFEGHEHFVMCVAF 148 (814)
T ss_dssp EEEEETTTCCEEEEEE---CCSSCE------EEEEECSSSSEEEEEETTSEEEEEEGGGT-SEEEEEEECCSSCEEEEEE
T ss_pred EEEEECCCCcEEEEEe---cCCCCE------EEEEEeCCCCEEEEEcCCCEEEEEECCCC-ceEEEEEcCCCCcEEEEEE
Confidence 66773 343333332 122222 78999999999998877654432222110 0111122234444556778
Q ss_pred ec-CCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEee--CCCCCccEEEEEeecCcceeeeeeeeccCCCc
Q 003363 260 EE-DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP--LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 336 (826)
Q Consensus 260 ~~-d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSP--Dg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~ 336 (826)
.+ +....+++.....|.+||+.+++............+..++|+| ||+. |+..+ .+..
T Consensus 149 ~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----l~~~~---------------~dg~ 209 (814)
T 3mkq_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY----MITAS---------------DDLT 209 (814)
T ss_dssp ETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCE----EEEEC---------------TTSE
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCE----EEEEe---------------CCCE
Confidence 88 5334455556788999999876644331122235677899999 8886 66655 2347
Q ss_pred eEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 337 LYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 337 l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
|..+|+ .++. ...+..+...+....|+|||+.|+..+.+ ..|++||+.++.
T Consensus 210 i~~~d~-----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~v~vwd~~~~~ 261 (814)
T 3mkq_A 210 IKIWDY-----------------QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED-----------GTLKIWNSSTYK 261 (814)
T ss_dssp EEEEET-----------------TTTEEEEEEECCSSCEEEEEECSSSSEEEEEETT-----------SCEEEEETTTCS
T ss_pred EEEEEC-----------------CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC-----------CeEEEEECCCCc
Confidence 888897 3333 45566666778889999999988776644 348889987754
Q ss_pred C
Q 003363 416 N 416 (826)
Q Consensus 416 ~ 416 (826)
.
T Consensus 262 ~ 262 (814)
T 3mkq_A 262 V 262 (814)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.34 E-value=6.9e-11 Score=126.68 Aligned_cols=261 Identities=8% Similarity=0.038 Sum_probs=145.1
Q ss_pred EEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCC--CccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 003363 159 VVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQ--TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (826)
Q Consensus 159 ~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~--~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~ 235 (826)
++++++++.++.....+ +++.++ ..++..+.+.... .. ..+.|||||+.+++...
T Consensus 5 ~~~~~~~~~~v~~~~~~----~v~~~d~~~~~~~~~~~~~~~~~~----------~~~~~s~dg~~~~v~~~-------- 62 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPN----NLHVVDVASDTVYKSCVMPDKFGP----------GTAMMAPDNRTAYVLNN-------- 62 (349)
T ss_dssp CCCCTTCEEEEEEETTT----EEEEEETTTTEEEEEEECSSCCSS----------CEEEECTTSSEEEEEET--------
T ss_pred ccccCCCEEEEEeCCCC----eEEEEECCCCcEEEEEecCCCCCC----------ceeEECCCCCEEEEEeC--------
Confidence 46788777665544332 466555 4556555555443 33 68999999997776532
Q ss_pred ccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCC-----CCccceEEEeeCCCCCc
Q 003363 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-----SLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~-----~~~~~~~~wSPDg~~~~ 310 (826)
....|+++|+++++......... ...+..++|+|||+.
T Consensus 63 -----------------------------------~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-- 105 (349)
T 1jmx_B 63 -----------------------------------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKE-- 105 (349)
T ss_dssp -----------------------------------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSE--
T ss_pred -----------------------------------CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCE--
Confidence 23679999999887654311111 123568899999998
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCccee---cCCCCccccCceecCCCCEEE
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN---LTESISSAFFPRFSPDGKFLV 387 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---Lt~~~~~~~~p~~SpDG~~l~ 387 (826)
|++........+ ..| ......|+++|+ .+++... ............|||||+ |+
T Consensus 106 --l~~~~~~~~~~~--~~~-~~~~~~i~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 106 --VYATVNPTQRLN--DHY-VVKPPRLEVFST-----------------ADGLEAKPVRTFPMPRQVYLMRAADDGS-LY 162 (349)
T ss_dssp --EEEEEEEEEECS--SCE-EECCCEEEEEEG-----------------GGGGGBCCSEEEECCSSCCCEEECTTSC-EE
T ss_pred --EEEEcccccccc--ccc-ccCCCeEEEEEC-----------------CCccccceeeeccCCCcccceeECCCCc-EE
Confidence 877663210000 000 012347999998 3332211 112223455667999999 54
Q ss_pred EEeccCCCCCCCCcccceEEEEeCCCCCCCCc-cccee------------------------eeeeeeeccC--------
Q 003363 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS-LEKIV------------------------DVIPVVQCAE-------- 434 (826)
Q Consensus 388 f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~-~~~~~------------------------~~~~~~~~~~-------- 434 (826)
. .. .+|+++|+.+++.... ..... ....+...+.
T Consensus 163 ~-~~------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 229 (349)
T 1jmx_B 163 V-AG------------PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA 229 (349)
T ss_dssp E-ES------------SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCC
T ss_pred E-cc------------CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccc
Confidence 4 21 1288888877654321 11100 0000000000
Q ss_pred ------------CCCCcc----cccCCCCCCcccc-CCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEee
Q 003363 435 ------------GDCFPG----LYSSSILSNPWLS-DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTL 497 (826)
Q Consensus 435 ------------~~~f~g----~~~~~~~~~~ws~-Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~ 497 (826)
.+...- ........++|+| ||+.+++. ...|+.+|+.+++...............+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~ 304 (349)
T 1jmx_B 230 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-----LNRLAKYDLKQRKLIKAANLDHTYYCVAFDK 304 (349)
T ss_dssp EEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-----ESEEEEEETTTTEEEEEEECSSCCCEEEECS
T ss_pred ccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-----cCeEEEEECccCeEEEEEcCCCCccceEECC
Confidence 000000 0001123557889 99988766 4578999999998765543333344568899
Q ss_pred cCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 498 DGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 498 dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
+++.+++. +.. ..|.+.+..+.
T Consensus 305 dg~~l~~~--~~~--~~v~v~d~~~~ 326 (349)
T 1jmx_B 305 KGDKLYLG--GTF--NDLAVFNPDTL 326 (349)
T ss_dssp SSSCEEEE--SBS--SEEEEEETTTT
T ss_pred CCCEEEEe--cCC--CeEEEEecccc
Confidence 99888763 222 56888886543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.7e-11 Score=133.68 Aligned_cols=275 Identities=11% Similarity=0.054 Sum_probs=165.4
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003363 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (826)
Q Consensus 105 s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (826)
+||++.++- +.....+.++++.+. .....+.... ..+...+|+|||+.|+..+..+ .+.+
T Consensus 117 ~p~~~~l~s---------~s~Dg~i~vwd~~~~-~~~~~l~~h~-----~~V~~v~~~~~~~~l~sgs~D~-----~i~i 176 (410)
T 1vyh_C 117 HPVFSVMVS---------ASEDATIKVWDYETG-DFERTLKGHT-----DSVQDISFDHSGKLLASCSADM-----TIKL 176 (410)
T ss_dssp CSSSSEEEE---------EESSSCEEEEETTTC-CCCEEECCCS-----SCEEEEEECTTSSEEEEEETTS-----CCCE
T ss_pred cCCCCEEEE---------EeCCCeEEEEECCCC-cEEEEEeccC-----CcEEEEEEcCCCCEEEEEeCCC-----eEEE
Confidence 566665433 233456677776332 2223333232 4588999999999998776543 3456
Q ss_pred ecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCC
Q 003363 185 WSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWG 264 (826)
Q Consensus 185 ~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g 264 (826)
|+-.....+..+ .+..+.| ..+.|+|||+.|+..+.+.... .|+............+..+.....+.++..
T Consensus 177 wd~~~~~~~~~~-~~h~~~V------~~v~~~p~~~~l~s~s~D~~i~--~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~ 247 (410)
T 1vyh_C 177 WDFQGFECIRTM-HGHDHNV------SSVSIMPNGDHIVSASRDKTIK--MWEVQTGYCVKTFTGHREWVRMVRPNQDGT 247 (410)
T ss_dssp EETTSSCEEECC-CCCSSCE------EEEEECSSSSEEEEEETTSEEE--EEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred EeCCCCceeEEE-cCCCCCE------EEEEEeCCCCEEEEEeCCCeEE--EEECCCCcEEEEEeCCCccEEEEEECCCCC
Confidence 632221222221 2222233 7899999999999888776543 333322222223344556666667777744
Q ss_pred ccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCC----------------ccEEEEEeecCcceeeeee
Q 003363 265 ETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL----------------HQYLVFVGWSSETRKLGIK 328 (826)
Q Consensus 265 ~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~----------------~~~lvf~~~~~~~~~~g~~ 328 (826)
..+++..+..|.+||+.+++..... ......+..++|+|++... .++|+..+
T Consensus 248 ~l~s~s~D~~v~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs----------- 315 (410)
T 1vyh_C 248 LIASCSNDQTVRVWVVATKECKAEL-REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS----------- 315 (410)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE-----------
T ss_pred EEEEEcCCCeEEEEECCCCceeeEe-cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe-----------
Confidence 4455666789999999888765431 3344567789999984310 00033333
Q ss_pred eeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEE
Q 003363 329 YCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLH 407 (826)
Q Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~ 407 (826)
.+..|.++|+ .++. ...+..+...+....|+|||++|+..+.+ ..|.
T Consensus 316 ----~D~~i~iwd~-----------------~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D-----------~~i~ 363 (410)
T 1vyh_C 316 ----RDKTIKMWDV-----------------STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD-----------KTLR 363 (410)
T ss_dssp ----TTSEEEEEET-----------------TTTEEEEEEECCSSCEEEEEECSSSSCEEEEETT-----------TEEE
T ss_pred ----CCCeEEEEEC-----------------CCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCC-----------CeEE
Confidence 3447889998 4443 45666677778889999999998866543 4689
Q ss_pred EEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003363 408 RIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (826)
Q Consensus 408 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (826)
+||+.++........ +...+..+.|+|++..| ++...++...+|.
T Consensus 364 vwd~~~~~~~~~~~~-------------------h~~~v~~l~~~~~~~~l-~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 364 VWDYKNKRCMKTLNA-------------------HEHFVTSLDFHKTAPYV-VTGSVDQTVKVWE 408 (410)
T ss_dssp EECCTTSCCCEEEEC-------------------CSSCEEEEEECSSSSCE-EEEETTSEEEEEC
T ss_pred EEECCCCceEEEEcC-------------------CCCcEEEEEEcCCCCEE-EEEeCCCcEEEEe
Confidence 999877543211111 11134567899999855 5556666666664
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4e-11 Score=151.91 Aligned_cols=235 Identities=12% Similarity=0.037 Sum_probs=154.4
Q ss_pred cccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEec
Q 003363 209 WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV 288 (826)
Q Consensus 209 ~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l 288 (826)
....++|||||+.|+....++... .|+............+........|+++....+++.....|.+||+.+++...+
T Consensus 963 ~i~~~~~sp~g~~l~~g~~~g~i~--i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~ 1040 (1249)
T 3sfz_A 963 QVSCCCLSPHLEYVAFGDEDGAIK--IIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL 1040 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCE--EEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECC
T ss_pred cEEEEEEcCCCCEEEEEcCCCCEE--EEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEE
Confidence 347889999999999988766433 233222222223334555666788998865566666778999999999988766
Q ss_pred cCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCC-cceec
Q 003363 289 KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNL 367 (826)
Q Consensus 289 ~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~L 367 (826)
......+..+.|+||++ ++..+ .+..|+.+|+ .++ ....+
T Consensus 1041 --~~~~~~v~~~~~~~~~~-----l~~~~---------------~dg~v~vwd~-----------------~~~~~~~~~ 1081 (1249)
T 3sfz_A 1041 --QAHQETVKDFRLLQDSR-----LLSWS---------------FDGTVKVWNV-----------------ITGRIERDF 1081 (1249)
T ss_dssp --BCCSSCEEEEEECSSSE-----EEEEE---------------SSSEEEEEET-----------------TTTCCCEEE
T ss_pred --ecCCCcEEEEEEcCCCc-----EEEEE---------------CCCcEEEEEC-----------------CCCceeEEE
Confidence 44555778899999876 55444 2337889998 444 34566
Q ss_pred CCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCC
Q 003363 368 TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 447 (826)
Q Consensus 368 t~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~ 447 (826)
..+...+....|||||+.|+..+.+ ..|.+||+.++......... ...+.
T Consensus 1082 ~~~~~~v~~~~~s~d~~~l~s~s~d-----------~~v~iwd~~~~~~~~~l~~h-------------------~~~v~ 1131 (1249)
T 3sfz_A 1082 TCHQGTVLSCAISSDATKFSSTSAD-----------KTAKIWSFDLLSPLHELKGH-------------------NGCVR 1131 (1249)
T ss_dssp ECCSSCCCCEEECSSSSSCEEECCS-----------SCCCEECSSSSSCSBCCCCC-------------------SSCEE
T ss_pred cccCCcEEEEEECCCCCEEEEEcCC-----------CcEEEEECCCcceeeeeccC-------------------CCcEE
Confidence 6677788999999999998876654 34788888776543221111 11334
Q ss_pred CCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec----------CCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEE
Q 003363 448 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT----------PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKY 517 (826)
Q Consensus 448 ~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt----------~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~ 517 (826)
.++|+|||+.|+. ...++. |..+|+.+++..... ...+.+....|++|+..++... ..+.+
T Consensus 1132 ~~~~s~dg~~lat-~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~------g~v~v 1202 (1249)
T 3sfz_A 1132 CSAFSLDGILLAT-GDDNGE--IRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG------GYLKW 1202 (1249)
T ss_dssp EEEECSSSSEEEE-EETTSC--CCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES------SSEEE
T ss_pred EEEECCCCCEEEE-EeCCCE--EEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC------CeEEE
Confidence 6789999996654 444444 555577777654322 2223455678999998776542 35777
Q ss_pred Eeeccc
Q 003363 518 GYFVDK 523 (826)
Q Consensus 518 ~~~~~~ 523 (826)
.++.++
T Consensus 1203 wd~~~g 1208 (1249)
T 3sfz_A 1203 WNVATG 1208 (1249)
T ss_dssp BCSSSC
T ss_pred EECCCC
Confidence 776544
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.33 E-value=3.3e-10 Score=122.55 Aligned_cols=250 Identities=11% Similarity=0.090 Sum_probs=145.0
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCC-CccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENE-NSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~-~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (826)
++|||+.++... ....+.++++.+... ....+.... ..+...+|+|||+.|+.....+ .+
T Consensus 16 ~s~~~~~l~~~~---------~d~~v~i~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~l~~~~~dg-----~i 76 (372)
T 1k8k_C 16 WNKDRTQIAICP---------NNHEVHIYEKSGNKWVQVHELKEHN-----GQVTGVDWAPDSNRIVTCGTDR-----NA 76 (372)
T ss_dssp ECTTSSEEEEEC---------SSSEEEEEEEETTEEEEEEEEECCS-----SCEEEEEEETTTTEEEEEETTS-----CE
T ss_pred ECCCCCEEEEEe---------CCCEEEEEeCCCCcEEeeeeecCCC-----CcccEEEEeCCCCEEEEEcCCC-----eE
Confidence 479999887642 234566666643310 223333232 4588999999999998876532 34
Q ss_pred EEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceee
Q 003363 183 ELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (826)
Q Consensus 183 ~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (826)
.+| ..++........ ...+.| ..+.|+|||+.|+..+.+
T Consensus 77 ~vwd~~~~~~~~~~~~~-~~~~~v------~~~~~~~~~~~l~~~~~d-------------------------------- 117 (372)
T 1k8k_C 77 YVWTLKGRTWKPTLVIL-RINRAA------RCVRWAPNEKKFAVGSGS-------------------------------- 117 (372)
T ss_dssp EEEEEETTEEEEEEECC-CCSSCE------EEEEECTTSSEEEEEETT--------------------------------
T ss_pred EEEECCCCeeeeeEEee-cCCCce------eEEEECCCCCEEEEEeCC--------------------------------
Confidence 455 233333333221 122222 789999999999887543
Q ss_pred cCCCccCCCccCceEEEEEccCCc----eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCc
Q 003363 261 EDWGETYAGKRQPSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 336 (826)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~----~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~ 336 (826)
..|.+||+.+++ ...+. ......+..++|+||++. |+..+ .+..
T Consensus 118 ------------~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~----l~~~~---------------~dg~ 165 (372)
T 1k8k_C 118 ------------RVISICYFEQENDWWVCKHIK-KPIRSTVLSLDWHPNSVL----LAAGS---------------CDFK 165 (372)
T ss_dssp ------------SSEEEEEEETTTTEEEEEEEC-TTCCSCEEEEEECTTSSE----EEEEE---------------TTSC
T ss_pred ------------CEEEEEEecCCCcceeeeeee-cccCCCeeEEEEcCCCCE----EEEEc---------------CCCC
Confidence 458888888776 23331 233456789999999997 76665 2336
Q ss_pred eEEEEcccccc-hhhhhhhhcCCCCCC-cceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCC
Q 003363 337 LYAVRVSLYKS-EASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (826)
Q Consensus 337 l~~~d~~~~~~-~~~~~~~~~~~~~~~-~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~ 414 (826)
|+++|+..... ..........+...+ ....+..+...+....|+|||+.|+..+.+ ..|.+||+.++
T Consensus 166 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~i~d~~~~ 234 (372)
T 1k8k_C 166 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD-----------STVCLADADKK 234 (372)
T ss_dssp EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT-----------TEEEEEEGGGT
T ss_pred EEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC-----------CEEEEEECCCC
Confidence 77777521000 000000000000122 344555666678899999999988877644 45899998775
Q ss_pred CCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003363 415 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (826)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl 475 (826)
+..... .. ....+..+.|+|||+.| ++. .++...+|.++-
T Consensus 235 ~~~~~~----------~~---------~~~~v~~~~~~~~~~~l-~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 235 MAVATL----------AS---------ETLPLLAVTFITESSLV-AAG-HDCFPVLFTYDS 274 (372)
T ss_dssp TEEEEE----------EC---------SSCCEEEEEEEETTEEE-EEE-TTSSCEEEEEET
T ss_pred ceeEEE----------cc---------CCCCeEEEEEecCCCEE-EEE-eCCeEEEEEccC
Confidence 432111 00 01123467899999744 443 556667776654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.5e-11 Score=133.54 Aligned_cols=261 Identities=11% Similarity=0.030 Sum_probs=152.7
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
.++...+|||||+.+|..+.+. ... . ++..+.+ .+..+.| ..++||||| .. ..
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~-----TV~-d--~~~~~~l---~gh~~~v------~~V~FsPdg-------~~---~~ 68 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDI-----SIG-Q--PKYAKDI---NCNSKNL------FHVKEFPLE-------FE---NK 68 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSE-----EEE-E--ECCCSCC---SSBGGGT------EEEEEECCC-------CC---CT
T ss_pred ccEEEEEECCCCCEEEEEcCCc-----eee-c--cccccee---cCCCccE------EEEEECCCC-------Cc---ce
Confidence 3688999999999999765432 222 2 1111111 2333333 789999999 11 12
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCC-----ccceEEEeeCCCC
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL-----SVGQVVWAPLNEG 308 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~-----~~~~~~wSPDg~~ 308 (826)
..+........... .+..++....|+||.....+......+.+||.++ ....+ . .+. .+..++|||||+.
T Consensus 69 ~~~~~~~~~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l--~-~~~~~~~~sv~svafSPDG~~ 143 (588)
T 2j04_A 69 LDFELAQQNGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNL--D-SKGNLSSRTYHCFEWNPIESS 143 (588)
T ss_dssp TTTSCCCSSCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEEC--C-CSSCSTTTCEEEEEECSSSSC
T ss_pred EEEEeCCCceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeec--c-CCCccccccEEEEEEcCCCCE
Confidence 22221111111111 2356677888999965566666778899999654 33333 2 222 4779999999998
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc--------ceec----CCCCccccC
Q 003363 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP--------VVNL----TESISSAFF 376 (826)
Q Consensus 309 ~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--------~~~L----t~~~~~~~~ 376 (826)
|+..+ .++.|.++|+ .++. ...+ .++...+..
T Consensus 144 ----LAsgs---------------~DGtVkIWd~-----------------~~~~l~~~~~i~l~ti~~~~~gh~~~V~s 187 (588)
T 2j04_A 144 ----IVVGN---------------EDGELQFFSI-----------------RKNSENTPEFYFESSIRLSDAGSKDWVTH 187 (588)
T ss_dssp ----EEEEE---------------TTSEEEEEEC-----------------CCCTTTCCCCEEEEEEECSCTTCCCCEEE
T ss_pred ----EEEEc---------------CCCEEEEEEC-----------------CCCccccccceeeeeeecccccccccEEE
Confidence 88877 3447888887 4443 2344 334457889
Q ss_pred ceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCC
Q 003363 377 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGC 456 (826)
Q Consensus 377 p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~ 456 (826)
.+||||| |+..+.+ ..+++||+.++........ +.. .+...+..++|+ |+
T Consensus 188 VawSPdg--Laass~D-----------~tVrlWd~~~~~~~~~~~t-------L~~--------~h~~~V~svaFs--g~ 237 (588)
T 2j04_A 188 IVWYEDV--LVAALSN-----------NSVFSMTVSASSHQPVSRM-------IQN--------ASRRKITDLKIV--DY 237 (588)
T ss_dssp EEEETTE--EEEEETT-----------CCEEEECCCSSSSCCCEEE-------EEC--------CCSSCCCCEEEE--TT
T ss_pred EEEcCCc--EEEEeCC-----------CeEEEEECCCCccccceee-------ecc--------cccCcEEEEEEE--CC
Confidence 9999999 5544433 4588999877553210000 000 011246688899 56
Q ss_pred EEEEEEEeCCeEEEEEEECCCCcEEEec-CCCCCeeeEEE--eecCCEEEEEEeCCCCCCeEEEEe
Q 003363 457 TMLLSSIWGSSQVIISVNVSSGELLRIT-PAESNFSWSLL--TLDGDNIIAVSSSPVDVPQVKYGY 519 (826)
Q Consensus 457 ~l~~~~~~~~~~~l~~vdl~tg~~~~lt-~~~~~~~~~~~--s~dg~~l~~~~s~~~~p~~l~~~~ 519 (826)
.|+.+ . . ..+..+|+.+++...+. .....+....| ++++..++ ++..... +++..+
T Consensus 238 ~LASa-~-~--~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La-~a~edG~--klw~~d 296 (588)
T 2j04_A 238 KVVLT-C-P--GYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILL-MSNKTSY--KVLLED 296 (588)
T ss_dssp EEEEE-C-S--SEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEE-ECSSCEE--EEEESS
T ss_pred EEEEE-e-C--CeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEE-EEcCCCC--EEEeec
Confidence 55443 2 2 47777788888885555 43335566678 87775433 3332222 566543
|
| >3g02_A Epoxide hydrolase; alpha/beta hydrolase fold, enantioselective, mutant, directed evolution; 1.50A {Aspergillus niger} SCOP: c.69.1.11 PDB: 1qo7_A 3g0i_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.9e-11 Score=132.19 Aligned_cols=120 Identities=14% Similarity=0.089 Sum_probs=86.9
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHH------CCcEEEEECCCCCCCCchhhhhcCCC
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS------VGYSLLIVNYRGSLGFGEEALQSLPG 645 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~------~G~~Vl~~d~rG~~g~G~~~~~~~~~ 645 (826)
+|..++.....+. ....|.||++||.+++ ...|...+..|++ .||.|+++|+||.| .+... .
T Consensus 93 ~g~~i~~~~~~~~----~~~~~pllllHG~~~s--~~~~~~~~~~L~~~~~~~~~gf~vv~~DlpG~G---~S~~~---~ 160 (408)
T 3g02_A 93 EGLTIHFAALFSE----REDAVPIALLHGWPGS--FVEFYPILQLFREEYTPETLPFHLVVPSLPGYT---FSSGP---P 160 (408)
T ss_dssp TTEEEEEEEECCS----CTTCEEEEEECCSSCC--GGGGHHHHHHHHHHCCTTTCCEEEEEECCTTST---TSCCS---C
T ss_pred CCEEEEEEEecCC----CCCCCeEEEECCCCCc--HHHHHHHHHHHhcccccccCceEEEEECCCCCC---CCCCC---C
Confidence 6788887777653 2345779999998866 5578888888887 69999999999944 43211 1
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCC-cEEEEEecchHHHHHHHHHhCCCceeEEEecCCc
Q 003363 646 KVGSQDVNDVLTAIDHVIDMGLANPS-KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (826)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~~d~~-rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~ 705 (826)
......++++.+.+..+++. +..+ ++.++|||+||.+++.++.++|+++...+..++.
T Consensus 161 ~~~~~~~~~~a~~~~~l~~~--lg~~~~~~lvG~S~Gg~ia~~~A~~~p~~~~~~l~~~~~ 219 (408)
T 3g02_A 161 LDKDFGLMDNARVVDQLMKD--LGFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNFCNM 219 (408)
T ss_dssp SSSCCCHHHHHHHHHHHHHH--TTCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHH--hCCCCCEEEeCCCchHHHHHHHHHhCCCceEEEEeCCCC
Confidence 11233567777777777665 3344 8999999999999999999998766666655443
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-10 Score=121.73 Aligned_cols=243 Identities=12% Similarity=0.120 Sum_probs=142.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
..+...+|+|||++|+..+..+ .+.+|+ .++..+.+. +..+.| ..+.|+||++.|+..+.+...
T Consensus 66 ~~v~~~~~s~dg~~l~s~s~D~-----~v~~wd~~~~~~~~~~~---~h~~~v------~~~~~~~~~~~l~s~s~D~~i 131 (319)
T 3frx_A 66 HIVQDCTLTADGAYALSASWDK-----TLRLWDVATGETYQRFV---GHKSDV------MSVDIDKKASMIISGSRDKTI 131 (319)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEE---CCSSCE------EEEEECTTSCEEEEEETTSCE
T ss_pred ccEEEEEECCCCCEEEEEeCCC-----EEEEEECCCCCeeEEEc---cCCCcE------EEEEEcCCCCEEEEEeCCCeE
Confidence 4588899999999998876544 577883 333333222 222233 789999999999998887755
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCC------CccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeC
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW------GETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 305 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~------g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPD 305 (826)
+. |+.. .........+..+.....+.+.- ...+++..+..|.+||+.+++..... ......+..++|+||
T Consensus 132 ~v--wd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~sp~ 207 (319)
T 3frx_A 132 KV--WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF-IGHNSNINTLTASPD 207 (319)
T ss_dssp EE--EETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE-CCCCSCEEEEEECTT
T ss_pred EE--EECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee-cCCCCcEEEEEEcCC
Confidence 43 3221 11111122333444444454431 12344556688999999887755431 334456788999999
Q ss_pred CCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCE
Q 003363 306 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF 385 (826)
Q Consensus 306 g~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~ 385 (826)
|+. |+..+ .+..|.++|+ .+++..........+...+|||||+.
T Consensus 208 g~~----l~s~~---------------~dg~i~iwd~-----------------~~~~~~~~~~~~~~v~~~~~sp~~~~ 251 (319)
T 3frx_A 208 GTL----IASAG---------------KDGEIMLWNL-----------------AAKKAMYTLSAQDEVFSLAFSPNRYW 251 (319)
T ss_dssp SSE----EEEEE---------------TTCEEEEEET-----------------TTTEEEEEEECCSCEEEEEECSSSSE
T ss_pred CCE----EEEEe---------------CCCeEEEEEC-----------------CCCcEEEEecCCCcEEEEEEcCCCCE
Confidence 997 77665 3347889998 44443322223445788999999998
Q ss_pred EEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC
Q 003363 386 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 465 (826)
Q Consensus 386 l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~ 465 (826)
|+..... .+.+++++++... ........ .+.......+..++|+|||++|+ +...+
T Consensus 252 la~~~~~------------~i~v~~~~~~~~~----------~~~~~~~~-~~~~~~~~~v~~~~~spdg~~l~-sg~~D 307 (319)
T 3frx_A 252 LAAATAT------------GIKVFSLDPQYLV----------DDLRPEFA-GYSKAAEPHAVSLAWSADGQTLF-AGYTD 307 (319)
T ss_dssp EEEEETT------------EEEEEEETTEEEE----------EEECCCCT-TCCGGGCCCEEEEEECTTSSEEE-EEETT
T ss_pred EEEEcCC------------CcEEEEeCcCeee----------eccCcccc-ccccCcCcceeEEEECCCCCEEE-EeecC
Confidence 8755432 2666776553211 10000000 00000111234678999999664 55556
Q ss_pred CeEEEEEEE
Q 003363 466 SSQVIISVN 474 (826)
Q Consensus 466 ~~~~l~~vd 474 (826)
+...||.+.
T Consensus 308 g~i~vWd~~ 316 (319)
T 3frx_A 308 NVIRVWQVM 316 (319)
T ss_dssp SCEEEEEEE
T ss_pred ceEEEEEEe
Confidence 666666554
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-11 Score=134.83 Aligned_cols=293 Identities=15% Similarity=0.145 Sum_probs=165.9
Q ss_pred ccEEEEeCCCCCeEEEEecCCC------CCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEe
Q 003363 155 GASAVVPSPSGSKLLVVRNPEN------ESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 226 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~------~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~ 226 (826)
.+...+|||||+.++++....+ .....+.+|+ .+...+.... ....+ .+..+.|||||+.|+..+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~------~v~~~~~s~~~~~l~~~~ 86 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDS------KFNDLDWSHNNKIIAGAL 86 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSS------CEEEEEECSSSSCEEEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCC------ceEEEEECCCCCeEEEEc
Confidence 4667899999995555542211 1222345552 2221111110 01112 237999999999999988
Q ss_pred ecCCCCCCCccCCC----CCCCCCCccCCCCCCcceeecCCC-ccCCCccCceEEEEEccCCc------eEe-cc-CCCC
Q 003363 227 EEPSPSKPTFSLGS----TKGGSSDKDCNSWKGQGDWEEDWG-ETYAGKRQPSLFVININSGE------VQA-VK-GIPK 293 (826)
Q Consensus 227 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~d~g-~~~~~~~~~~l~v~d~~~g~------~~~-l~-~~~~ 293 (826)
.+.... .|+... .........+........|.++.+ ..+++.....|.+||+.+++ ... +. ....
T Consensus 87 ~dg~v~--vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 164 (416)
T 2pm9_A 87 DNGSLE--LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS 164 (416)
T ss_dssp SSSCEE--EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred cCCeEE--EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCC
Confidence 776543 233221 111222334555666778888733 34455567889999998876 221 10 0123
Q ss_pred CCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCC--
Q 003363 294 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTES-- 370 (826)
Q Consensus 294 ~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~-- 370 (826)
...+..++|+||+.. +++++. .+..|.++|+ .+++ ...+...
T Consensus 165 ~~~v~~~~~~~~~~~----~l~~~~--------------~dg~v~iwd~-----------------~~~~~~~~~~~~~~ 209 (416)
T 2pm9_A 165 VDEVISLAWNQSLAH----VFASAG--------------SSNFASIWDL-----------------KAKKEVIHLSYTSP 209 (416)
T ss_dssp SCCCCEEEECSSCTT----EEEEES--------------SSSCEEEEET-----------------TTTEEEEEECCCCC
T ss_pred CCCeeEEEeCCCCCc----EEEEEc--------------CCCCEEEEEC-----------------CCCCcceEEecccc
Confidence 346778999999665 666552 2347889998 4443 3334333
Q ss_pred ----CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCC-Cccc-ceeeeeeeeeccCCCCCcccccC
Q 003363 371 ----ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF-SSLE-KIVDVIPVVQCAEGDCFPGLYSS 444 (826)
Q Consensus 371 ----~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~-~~~~-~~~~~~~~~~~~~~~~f~g~~~~ 444 (826)
...+....|+|||..+++....+ .....|++||+.++... .... . +..
T Consensus 210 ~~~~~~~v~~~~~~~~~~~~l~~~~~d-------~~~~~i~~~d~~~~~~~~~~~~~~-------------------~~~ 263 (416)
T 2pm9_A 210 NSGIKQQLSVVEWHPKNSTRVATATGS-------DNDPSILIWDLRNANTPLQTLNQG-------------------HQK 263 (416)
T ss_dssp SSCCCCCEEEEEECSSCTTEEEEEECC-------SSSCCCCEEETTSTTSCSBCCCSC-------------------CSS
T ss_pred ccccCCceEEEEECCCCCCEEEEEECC-------CCCceEEEEeCCCCCCCcEEeecC-------------------ccC
Confidence 45678899999986544444332 11236889998875321 1111 1 111
Q ss_pred CCCCCcccc-CCCEEEEEEEeCCeEEEEEEECCCCcEEEe-cCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003363 445 SILSNPWLS-DGCTMLLSSIWGSSQVIISVNVSSGELLRI-TPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (826)
Q Consensus 445 ~~~~~~ws~-Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~l-t~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 522 (826)
.+..+.|+| |++.| ++...++ .|..+|+.+++.... ......+....|++++..++++.+.. ..|.+.++..
T Consensus 264 ~v~~~~~s~~~~~~l-~s~~~dg--~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d---~~i~iw~~~~ 337 (416)
T 2pm9_A 264 GILSLDWCHQDEHLL-LSSGRDN--TVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFD---NKIEVQTLQN 337 (416)
T ss_dssp CEEEEEECSSCSSCE-EEEESSS--EEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSS---SEEEEEESCC
T ss_pred ceeEEEeCCCCCCeE-EEEeCCC--CEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecC---CcEEEEEccC
Confidence 344678999 77755 4444444 456667777765543 33344455678899885455555443 2366666654
Q ss_pred c
Q 003363 523 K 523 (826)
Q Consensus 523 ~ 523 (826)
.
T Consensus 338 ~ 338 (416)
T 2pm9_A 338 L 338 (416)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=1e-10 Score=126.84 Aligned_cols=256 Identities=12% Similarity=0.012 Sum_probs=132.0
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeE-EEEec-------C-
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKL-LVVRN-------P- 174 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~l-a~~~~-------~- 174 (826)
+||||++++ +.+.. .+.+++++.. ++..++...+.. ......+|||||++| +++.+ .
T Consensus 47 ~spdg~~l~-~~~~~---------~v~~~~~~~~-g~~~~~~~~~~~---g~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 112 (365)
T 1jof_A 47 FDHERKNIY-GAAMK---------KWSSFAVKSP-TEIVHEASHPIG---GHPRANDADTNTRAIFLLAAKQPPYAVYAN 112 (365)
T ss_dssp ECTTSSEEE-EEEBT---------EEEEEEEEET-TEEEEEEEEECC---SSGGGGCTTSCCEEEEEEECSSTTCCEEEE
T ss_pred ECCCCCEEE-EEccc---------eEEEEEECCC-CCEEEeeEeecC---CCCccEEECCCCCEEEEEEecCCcceeccc
Confidence 489999774 33321 4556666422 222222211100 113347899999973 45543 1
Q ss_pred ----CCCCCeEEEEecCCceeEEEec-CCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcc
Q 003363 175 ----ENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKD 249 (826)
Q Consensus 175 ----~~~~~~~~~i~~~~~~~~~~~~-~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (826)
.++...+|.+...++..+.+.. ...... ...++.|||||++|+.. ..
T Consensus 113 ~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~------~~~~~~~spdG~~l~~~-~~--------------------- 164 (365)
T 1jof_A 113 PFYKFAGYGNVFSVSETGKLEKNVQNYEYQENT------GIHGMVFDPTETYLYSA-DL--------------------- 164 (365)
T ss_dssp EESSSCCEEEEEEECTTCCEEEEEEEEECCTTC------CEEEEEECTTSSEEEEE-ET---------------------
T ss_pred eeecCCceEEEEccCCCCcCcceEeeEEeCCCC------cceEEEECCCCCEEEEE-cC---------------------
Confidence 2233344444434544433321 100001 12689999999987554 22
Q ss_pred CCCCCCcceeecCCCccCCCccCceEEEEEcc-CCceEeccC--CC-CCCccceEEEeeCCCCCccEEEEEeecCcceee
Q 003363 250 CNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGEVQAVKG--IP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL 325 (826)
Q Consensus 250 ~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-~g~~~~l~~--~~-~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~ 325 (826)
+...|+++|++ +|+.+.+.. .+ ....+..++|||||+. |++... .
T Consensus 165 ---------------------~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~----l~v~~~-~----- 213 (365)
T 1jof_A 165 ---------------------TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNY----LYALME-A----- 213 (365)
T ss_dssp ---------------------TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSE----EEEEET-T-----
T ss_pred ---------------------CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCE----EEEEEC-C-----
Confidence 12579999998 787654311 12 1345678899999997 766542 1
Q ss_pred eeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcce-------ecCCC-Cc---------cccCce-ecCCCCEEE
Q 003363 326 GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-------NLTES-IS---------SAFFPR-FSPDGKFLV 387 (826)
Q Consensus 326 g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~Lt~~-~~---------~~~~p~-~SpDG~~l~ 387 (826)
...+.+++++. .+++.. .+..+ .+ ....+. |||||++|+
T Consensus 214 --------~~~v~v~~~~~---------------~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~ 270 (365)
T 1jof_A 214 --------GNRICEYVIDP---------------ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp --------TTEEEEEEECT---------------TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred --------CCeEEEEEEeC---------------CCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence 12344444310 233321 12111 01 356788 999999885
Q ss_pred EEeccCCCCCCCCcccceEEEEeCC-CCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCcccc---CCCEEEEEEE
Q 003363 388 FLSAKSSVDSGAHSATDSLHRIDWP-TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS---DGCTMLLSSI 463 (826)
Q Consensus 388 f~s~~~~~~~g~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~---Dg~~l~~~~~ 463 (826)
.+++.. . ......|.+|+++ ++....+ ...+.. .......++|+| ||++|++...
T Consensus 271 -v~~~~~---~-~~~~~~i~v~~~~~~g~~~~~-------~~~~~~---------~~~~~~~~a~sp~~~dg~~l~v~~~ 329 (365)
T 1jof_A 271 -ASSRAN---K-FELQGYIAGFKLRDCGSIEKQ-------LFLSPT---------PTSGGHSNAVSPCPWSDEWMAITDD 329 (365)
T ss_dssp -EEEEES---S-TTSCCEEEEEEECTTSCEEEE-------EEEEEC---------SSCCTTCCCEEECTTCTTEEEEECS
T ss_pred -EECCCC---C-CCCCCeEEEEEECCCCCEEEe-------eeeeec---------CCCCcccceecCCCcCCCEEEEEEc
Confidence 444321 0 0011267888775 3322110 000100 001234678899 8998877654
Q ss_pred eCCeEEEEEEECC
Q 003363 464 WGSSQVIISVNVS 476 (826)
Q Consensus 464 ~~~~~~l~~vdl~ 476 (826)
..+...+|.+|..
T Consensus 330 ~~~~v~v~~~~~~ 342 (365)
T 1jof_A 330 QEGWLEIYRWKDE 342 (365)
T ss_dssp SSCEEEEEEEETT
T ss_pred CCCeEEEEEEchh
Confidence 4567777877753
|
| >1kez_A Erythronolide synthase; polyketide synthase, modular polyketide synthase, thioesterase, 6-DEB, TE, DEBS, alpha, beta-hydrolase; 2.80A {Saccharopolyspora erythraea} SCOP: c.69.1.22 PDB: 1mo2_A | Back alignment and structure |
|---|
Probab=99.31 E-value=5.1e-12 Score=133.09 Aligned_cols=211 Identities=13% Similarity=0.062 Sum_probs=124.4
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHH-HHHHcC
Q 003363 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAID-HVIDMG 666 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~-~l~~~~ 666 (826)
..+..|.||++||.+.......|......|. .+|.|+.+|+||. |.+.. ....++++.+.+. .+.+.
T Consensus 63 ~~~~~~~lvllhG~~~~~~~~~~~~~~~~l~-~~~~v~~~d~~G~---G~s~~-------~~~~~~~~a~~~~~~l~~~- 130 (300)
T 1kez_A 63 DGPGEVTVICCAGTAAISGPHEFTRLAGALR-GIAPVRAVPQPGY---EEGEP-------LPSSMAAVAAVQADAVIRT- 130 (300)
T ss_dssp CCSCSSEEEECCCSSTTCSTTTTHHHHHHTS-SSCCBCCCCCTTS---STTCC-------BCSSHHHHHHHHHHHHHHH-
T ss_pred CCCCCCeEEEECCCcccCcHHHHHHHHHhcC-CCceEEEecCCCC---CCCCC-------CCCCHHHHHHHHHHHHHHh-
Confidence 3456789999999776532356777777665 4699999999994 43211 1224555554443 44444
Q ss_pred CCCCCcEEEEEecchHHHHHHHHHhCC---CceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChh--
Q 003363 667 LANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVE-- 741 (826)
Q Consensus 667 ~~d~~rv~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 741 (826)
.+.+++.|+|||+||.+++.++.++| ++++++|+.++........ ...+. ..................
T Consensus 131 -~~~~~~~LvGhS~GG~vA~~~A~~~p~~g~~v~~lvl~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~ 203 (300)
T 1kez_A 131 -QGDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYPPGHQDA----MNAWL--EELTATLFDRETVRMDDTRL 203 (300)
T ss_dssp -CSSCCEEEECCTHHHHHHHHHHHHTTTTTCCCSEEECBTCCCTTTCHH----HHHHH--HHHHGGGCCCCSSCCCHHHH
T ss_pred -cCCCCEEEEEECHhHHHHHHHHHHHHhcCCCccEEEEECCCCCcchhH----HHHHH--HHHHHHHHhCcCCccchHHH
Confidence 34578999999999999999999988 4899999998764321100 00000 000000000000000011
Q ss_pred -hHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhC-CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 003363 742 -DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK-GVETKVIVFPNDVHGIERPQSDFESFLNIGL 819 (826)
Q Consensus 742 -~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~-g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~ 819 (826)
....+...-......++++|+|+++|+ |..+++.. .. +... ...++++++++ +|.....+....+...|.+
T Consensus 204 ~~~~~~~~~~~~~~~~~i~~P~lii~G~-d~~~~~~~-~~----~~~~~~~~~~~~~i~g-gH~~~~~e~~~~~~~~i~~ 276 (300)
T 1kez_A 204 TALGAYDRLTGQWRPRETGLPTLLVSAG-EPMGPWPD-DS----WKPTWPFEHDTVAVPG-DHFTMVQEHADAIARHIDA 276 (300)
T ss_dssp HHHHHHHHHTTTCCCCCCSCCBEEEEES-SCSSCCCS-SC----CSCCCSSCCEEEEESS-CTTTSSSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCCCEEEEEeC-CCCCCCcc-cc----hhhhcCCCCeEEEecC-CChhhccccHHHHHHHHHH
Confidence 111111111111246789999999995 66666544 22 2222 22478999999 8987643445588899999
Q ss_pred HHHHH
Q 003363 820 WFKKY 824 (826)
Q Consensus 820 w~~~~ 824 (826)
||.+.
T Consensus 277 fl~~~ 281 (300)
T 1kez_A 277 WLGGG 281 (300)
T ss_dssp HHTCC
T ss_pred HHHhc
Confidence 99764
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-12 Score=145.45 Aligned_cols=183 Identities=16% Similarity=0.266 Sum_probs=121.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
..+...+|||||++||..+..+ ...+|+... .+.... .+.. .....+..++|||||+.||..++++...
T Consensus 86 ~~V~~vawSPdG~~LAs~s~dg-----~V~iwd~~~--~l~~l~--~~~~-~~~~sv~svafSPDG~~LAsgs~DGtVk- 154 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSNNG-----NVSVFKDNK--MLTNLD--SKGN-LSSRTYHCFEWNPIESSIVVGNEDGELQ- 154 (588)
T ss_dssp CCEEEEEECSSSSCEEEEETTS-----CEEEEETTE--EEEECC--CSSC-STTTCEEEEEECSSSSCEEEEETTSEEE-
T ss_pred CcEEEEEECCCCCEEEEEeCCC-----cEEEEeCCc--eeeecc--CCCc-cccccEEEEEEcCCCCEEEEEcCCCEEE-
Confidence 4589999999999999887654 466775332 222222 1111 0111237899999999999999887654
Q ss_pred CCccCCCCCCC-------CC----CccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceE----eccCCCCCCccc
Q 003363 234 PTFSLGSTKGG-------SS----DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ----AVKGIPKSLSVG 298 (826)
Q Consensus 234 ~~~~~~~~~~~-------~~----~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~----~l~~~~~~~~~~ 298 (826)
.|+...+... .. ..++..|+...+|+|| | ..+...+..+++||+++++.. .+. ......+.
T Consensus 155 -IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd-g-Laass~D~tVrlWd~~~~~~~~~~~tL~-~~h~~~V~ 230 (588)
T 2j04_A 155 -FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED-V-LVAALSNNSVFSMTVSASSHQPVSRMIQ-NASRRKIT 230 (588)
T ss_dssp -EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT-E-EEEEETTCCEEEECCCSSSSCCCEEEEE-CCCSSCCC
T ss_pred -EEECCCCccccccceeeeeeecccccccccEEEEEEcCC-c-EEEEeCCCeEEEEECCCCccccceeeec-ccccCcEE
Confidence 3443222210 11 1446679999999999 4 777778899999999988742 242 12345788
Q ss_pred eEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceec-CCCCccccCc
Q 003363 299 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESISSAFFP 377 (826)
Q Consensus 299 ~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-t~~~~~~~~p 377 (826)
.++|+ |+. |+.++ ...|..+|+ .++....+ ..+...+...
T Consensus 231 svaFs--g~~----LASa~----------------~~tIkLWd~-----------------~~~~~~~~~~gh~~~V~~v 271 (588)
T 2j04_A 231 DLKIV--DYK----VVLTC----------------PGYVHKIDL-----------------KNYSISSLKTGSLENFHII 271 (588)
T ss_dssp CEEEE--TTE----EEEEC----------------SSEEEEEET-----------------TTTEEEEEECSCCSCCCEE
T ss_pred EEEEE--CCE----EEEEe----------------CCeEEEEEC-----------------CCCeEEEEEcCCCceEEEE
Confidence 99999 554 66554 137999998 66666333 3666778889
Q ss_pred ee--cCCCCEEEEEe
Q 003363 378 RF--SPDGKFLVFLS 390 (826)
Q Consensus 378 ~~--SpDG~~l~f~s 390 (826)
.| ||||+.|+-..
T Consensus 272 a~~~s~d~~~La~a~ 286 (588)
T 2j04_A 272 PLNHEKESTILLMSN 286 (588)
T ss_dssp EETTCSSCEEEEECS
T ss_pred EeeeCCCCCEEEEEc
Confidence 99 99998765433
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-10 Score=125.77 Aligned_cols=269 Identities=12% Similarity=0.037 Sum_probs=153.5
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (826)
++|||++++-. ..+..+.+|+.... .....++... ..+...+|||||+.||.....+ ...
T Consensus 72 ~s~d~~~l~s~---------s~Dg~v~vWd~~~~-~~~~~~~~~~-----~~v~~~~~sp~g~~lasg~~d~-----~i~ 131 (354)
T 2pbi_B 72 WCKDKRRIVSS---------SQDGKVIVWDSFTT-NKEHAVTMPC-----TWVMACAYAPSGCAIACGGLDN-----KCS 131 (354)
T ss_dssp ECTTSSEEEEE---------ETTSEEEEEETTTC-CEEEEEECSS-----SCCCEEEECTTSSEEEEESTTS-----EEE
T ss_pred ECCCCCEEEEE---------eCCCeEEEEECCCC-CcceEEecCC-----CCEEEEEECCCCCEEEEeeCCC-----CEE
Confidence 46777766432 23456667764322 2222222222 3578899999999998764432 344
Q ss_pred Eec---CC-----ceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCC
Q 003363 184 LWS---QS-----QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 255 (826)
Q Consensus 184 i~~---~~-----~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (826)
+|. .. ....... ...+. +..++|+||++.|+..+.+.... .|+............+.....
T Consensus 132 v~~~~~~~~~~~~~~~~~~~---~h~~~------v~~~~~~~~~~~l~t~s~D~~v~--lwd~~~~~~~~~~~~h~~~v~ 200 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVA---MHTNY------LSACSFTNSDMQILTASGDGTCA--LWDVESGQLLQSFHGHGADVL 200 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEE---ECSSC------EEEEEECSSSSEEEEEETTSEEE--EEETTTCCEEEEEECCSSCEE
T ss_pred EEEEeccccccccccceeee---ccCCc------EEEEEEeCCCCEEEEEeCCCcEE--EEeCCCCeEEEEEcCCCCCeE
Confidence 441 10 1111111 11122 37899999999999888776543 333222221112222322222
Q ss_pred cceeec--CCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccC
Q 003363 256 QGDWEE--DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNR 333 (826)
Q Consensus 256 ~~~~~~--d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~ 333 (826)
...+.+ +....+++..+..|.+||+.+++..... ......+..++|+|||+. |+..+ .
T Consensus 201 ~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~-~~h~~~v~~v~~~p~~~~----l~s~s---------------~ 260 (354)
T 2pbi_B 201 CLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF-ETHESDVNSVRYYPSGDA----FASGS---------------D 260 (354)
T ss_dssp EEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------T
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCCeEEEEEeCCCCE----EEEEe---------------C
Confidence 334443 2223445556789999999988765431 234456789999999997 76665 2
Q ss_pred CCceEEEEcccccchhhhhhhhcCCCCCCcc-eecCCC--CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEe
Q 003363 334 PCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 410 (826)
Q Consensus 334 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~--~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d 410 (826)
+..|.++|+ ..+.. ..+... ........|||||+.|+..+.+ ..|.+||
T Consensus 261 D~~v~lwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d-----------~~i~vwd 312 (354)
T 2pbi_B 261 DATCRLYDL-----------------RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYND-----------YTINVWD 312 (354)
T ss_dssp TSCEEEEET-----------------TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT-----------SCEEEEE
T ss_pred CCeEEEEEC-----------------CCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECC-----------CcEEEEE
Confidence 336888887 33322 222222 2245678999999988766544 4589999
Q ss_pred CCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003363 411 WPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (826)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (826)
+.++.......+ +...+..++|+|||+.| ++...++...||
T Consensus 313 ~~~~~~~~~l~~-------------------h~~~v~~l~~spdg~~l-~sgs~D~~v~vW 353 (354)
T 2pbi_B 313 VLKGSRVSILFG-------------------HENRVSTLRVSPDGTAF-CSGSWDHTLRVW 353 (354)
T ss_dssp TTTCSEEEEECC-------------------CSSCEEEEEECTTSSCE-EEEETTSEEEEE
T ss_pred CCCCceEEEEEC-------------------CCCcEEEEEECCCCCEE-EEEcCCCCEEec
Confidence 877553211100 11234577899999855 555566666665
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.31 E-value=8.5e-12 Score=135.72 Aligned_cols=233 Identities=9% Similarity=0.064 Sum_probs=135.5
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
.+...+|||||++||..... +.-.+|.+.. +....+..+ .+..+.| ..++|+|||+.|+..+.+
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d--~~i~iw~~~~-~~~~~~~~~-~~h~~~v------~~~~~s~~~~~l~s~s~d------ 76 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTAT--NQVELYEQDG-NGWKHARTF-SDHDKIV------TCVDWAPKSNRIVTCSQD------ 76 (377)
T ss_dssp CCSCCEECSSSSEEECCCSS--SCBCEEEEET-TEEEECCCB-CCCSSCE------EEEEECTTTCCEEEEETT------
T ss_pred cEEEEEECCCCCEEEEecCC--CEEEEEEccC-CceEEEEEE-ecCCceE------EEEEEeCCCCEEEEEeCC------
Confidence 47788999999999875432 3333443332 211221111 1222333 789999999999887543
Q ss_pred CccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc----eEeccCCCCCCccceEEEeeCCCCCc
Q 003363 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~----~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
..|.+||+.+++ ...+ ......+..++|+|||+.
T Consensus 77 --------------------------------------~~v~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~-- 114 (377)
T 3dwl_C 77 --------------------------------------RNAYVYEKRPDGTWKQTLVL--LRLNRAATFVRWSPNEDK-- 114 (377)
T ss_dssp --------------------------------------SSEEEC------CCCCEEEC--CCCSSCEEEEECCTTSSC--
T ss_pred --------------------------------------CeEEEEEcCCCCceeeeeEe--cccCCceEEEEECCCCCE--
Confidence 468899988876 3334 344557789999999998
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc----ceecCC-CCccccCceecCCCCE
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP----VVNLTE-SISSAFFPRFSPDGKF 385 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~----~~~Lt~-~~~~~~~p~~SpDG~~ 385 (826)
|+..+ .+..|.++|+ .+++ ...+.. +...+....|+|||++
T Consensus 115 --l~~~~---------------~d~~i~iwd~-----------------~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 115 --FAVGS---------------GARVISVCYF-----------------EQENDWWVSKHLKRPLRSTILSLDWHPNNVL 160 (377)
T ss_dssp --CEEEE---------------SSSCEEECCC----------------------CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred --EEEEe---------------cCCeEEEEEE-----------------CCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence 88776 2336778887 3333 456665 6777889999999999
Q ss_pred EEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccc--------eeeeeeeeeccCCCCCcccccCCCCCCccccCCCE
Q 003363 386 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK--------IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 457 (826)
Q Consensus 386 l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~ 457 (826)
|+..+.+ ..|++||+.+++....... ........ . +...+..+.|+|||+.
T Consensus 161 l~~~~~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~v~~~~~sp~~~~ 219 (377)
T 3dwl_C 161 LAAGCAD-----------RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--P--------SGGWVHAVGFSPSGNA 219 (377)
T ss_dssp EEEEESS-----------SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--C--------CSSSEEEEEECTTSSC
T ss_pred EEEEeCC-----------CEEEEEEEEecccCCCccccccccccchhhhhhcc--c--------CCceEEEEEECCCCCE
Confidence 8877754 3488888765432111000 01111111 0 1223557789999996
Q ss_pred EEEEEEeCCeEEEEEEECCCCcE-----EEecCCCCCeeeEEEeecCCEEE
Q 003363 458 MLLSSIWGSSQVIISVNVSSGEL-----LRITPAESNFSWSLLTLDGDNII 503 (826)
Q Consensus 458 l~~~~~~~~~~~l~~vdl~tg~~-----~~lt~~~~~~~~~~~s~dg~~l~ 503 (826)
|+. ...++. |..+|+.+++. ..+......+....|+++++.++
T Consensus 220 l~~-~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 267 (377)
T 3dwl_C 220 LAY-AGHDSS--VTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVA 267 (377)
T ss_dssp EEE-EETTTE--EC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEE
T ss_pred EEE-EeCCCc--EEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEE
Confidence 654 444454 44456666653 33444444566678899886543
|
| >3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG, protein structure initiative, midwest center FO structural genomics; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-11 Score=123.77 Aligned_cols=199 Identities=12% Similarity=0.102 Sum_probs=125.7
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCC---cEEEEECCCCCCC--Cchhhh-h-cCC-------CC-CC----cchHH
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVG---YSLLIVNYRGSLG--FGEEAL-Q-SLP-------GK-VG----SQDVN 653 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G---~~Vl~~d~rG~~g--~G~~~~-~-~~~-------~~-~~----~~~~~ 653 (826)
+.||++||.+.+ ...|..++..|++.| +.|+.+|.++.+. +..... . ..| .+ .+ ....+
T Consensus 5 ~pvv~iHG~~~~--~~~~~~~~~~L~~~~~~~~~vi~~~v~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~a~ 82 (250)
T 3lp5_A 5 APVIMVPGSSAS--QNRFDSLITELGKETPKKHSVLKLTVQTDGTIKYSGSIAANDNEPFIVIGFANNRDGKANIDKQAV 82 (250)
T ss_dssp CCEEEECCCGGG--HHHHHHHHHHHHHHSSSCCCEEEEEECTTSCEEEEECCCTTCSSCEEEEEESCCCCSHHHHHHHHH
T ss_pred CCEEEECCCCCC--HHHHHHHHHHHHhcCCCCceEEEEEEecCCeEEEeeecCCCCcCCeEEEEeccCCCcccCHHHHHH
Confidence 458889996654 557888899998876 6777776555321 000000 0 000 00 00 12357
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhC-----CCceeEEEecCCccchhhhccCCCCCCchhhhhccC
Q 003363 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-----PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 728 (826)
Q Consensus 654 D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~-----p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 728 (826)
++.++++.+.++. +.+++.|+||||||.++..++.++ +++++.+|++++..+..... +.
T Consensus 83 ~l~~~~~~l~~~~--~~~~~~lvGHSmGg~~a~~~~~~~~~~~~~~~v~~lv~l~~p~~g~~~~-----~~--------- 146 (250)
T 3lp5_A 83 WLNTAFKALVKTY--HFNHFYALGHSNGGLIWTLFLERYLKESPKVHIDRLMTIASPYNMESTS-----TT--------- 146 (250)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEEEETHHHHHHHHHHHHTGGGSTTCEEEEEEEESCCTTTTCCC-----SS---------
T ss_pred HHHHHHHHHHHHc--CCCCeEEEEECHhHHHHHHHHHHccccccchhhCEEEEECCCCCccccc-----cc---------
Confidence 7788888887763 457899999999999999998877 67899999887755422110 00
Q ss_pred cCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeC----CCCCCCcHHHHHHHHHHHhCCCCEEEEEeC--CCCC
Q 003363 729 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA----QDLRVPVSNGLQYARALREKGVETKVIVFP--NDVH 802 (826)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~----~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p--~~~H 802 (826)
........+... ...+.+ ++|+|+|+|+ .|..||...++.+...++......+.+.+. +++|
T Consensus 147 ---------~~~~~~~~l~~~--~~~lp~-~vpvl~I~G~~~~~~Dg~Vp~~sa~~l~~l~~~~~~~~~~~~v~g~~a~H 214 (250)
T 3lp5_A 147 ---------AKTSMFKELYRY--RTGLPE-SLTVYSIAGTENYTSDGTVPYNSVNYGKYIFQDQVKHFTEITVTGANTAH 214 (250)
T ss_dssp ---------CCCHHHHHHHHT--GGGSCT-TCEEEEEECCCCCCTTTBCCHHHHTTHHHHHTTTSSEEEEEECTTTTBSS
T ss_pred ---------ccCHHHHHHHhc--cccCCC-CceEEEEEecCCCCCCceeeHHHHHHHHHHhcccccceEEEEEeCCCCch
Confidence 001112222211 122233 6899999999 999999999988877776544445555555 4669
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q 003363 803 GIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 803 ~~~~~~~~~~~~~~i~~w~~~ 823 (826)
..... +. ++.+.|.+||.+
T Consensus 215 ~~l~e-~~-~v~~~I~~FL~~ 233 (250)
T 3lp5_A 215 SDLPQ-NK-QIVSLIRQYLLA 233 (250)
T ss_dssp CCHHH-HH-HHHHHHHHHTSC
T ss_pred hcchh-CH-HHHHHHHHHHhc
Confidence 77543 33 678888888753
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-10 Score=125.36 Aligned_cols=249 Identities=12% Similarity=0.080 Sum_probs=139.8
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
..+...+|||||+.|+..+..+ .+.+|+ .++..+.+. +..+.| ..++|||||+.|+..+.+...
T Consensus 77 ~~V~~~~~~~~~~~l~s~s~D~-----~v~lwd~~~~~~~~~~~---~h~~~v------~~v~~sp~~~~l~s~~~d~~i 142 (343)
T 2xzm_R 77 HFVSDLALSQENCFAISSSWDK-----TLRLWDLRTGTTYKRFV---GHQSEV------YSVAFSPDNRQILSAGAEREI 142 (343)
T ss_dssp SCEEEEEECSSTTEEEEEETTS-----EEEEEETTSSCEEEEEE---CCCSCE------EEEEECSSTTEEEEEETTSCE
T ss_pred CceEEEEECCCCCEEEEEcCCC-----cEEEEECCCCcEEEEEc---CCCCcE------EEEEECCCCCEEEEEcCCCEE
Confidence 4588899999999998766543 577773 333333222 222223 789999999999988877654
Q ss_pred CCCCccCCCCC--CCCCCccCCCCCCcceeecCCC----------ccCCCccCceEEEEEccCCceEeccCCCCCCccce
Q 003363 232 SKPTFSLGSTK--GGSSDKDCNSWKGQGDWEEDWG----------ETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQ 299 (826)
Q Consensus 232 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~g----------~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~ 299 (826)
.. |+..... .......+..+.....|.++.. ...++.....|.+||........+ ......+..
T Consensus 143 ~~--wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~h~~~v~~ 218 (343)
T 2xzm_R 143 KL--WNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTF--KAHESNVNH 218 (343)
T ss_dssp EE--EESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEE--ECCSSCEEE
T ss_pred EE--EeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEE--cCccccceE
Confidence 42 3321100 0011123444455556666531 223344567899999554434444 233456788
Q ss_pred EEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCcee
Q 003363 300 VVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRF 379 (826)
Q Consensus 300 ~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~ 379 (826)
++|+|||+. |+..+ .+..|+++|+. ..............+...+|
T Consensus 219 ~~~s~~g~~----l~sgs---------------~dg~v~iwd~~----------------~~~~~~~~~~~~~~v~~v~~ 263 (343)
T 2xzm_R 219 LSISPNGKY----IATGG---------------KDKKLLIWDIL----------------NLTYPQREFDAGSTINQIAF 263 (343)
T ss_dssp EEECTTSSE----EEEEE---------------TTCEEEEEESS----------------CCSSCSEEEECSSCEEEEEE
T ss_pred EEECCCCCE----EEEEc---------------CCCeEEEEECC----------------CCcccceeecCCCcEEEEEE
Confidence 999999997 77665 33468888872 12222222222344778899
Q ss_pred cCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEE
Q 003363 380 SPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 459 (826)
Q Consensus 380 SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~ 459 (826)
||||+.|+. +.+ ..+.+||+.++....+..-.. .++... ....+ +...+..++|+|||+.|
T Consensus 264 sp~~~~la~-~~d-----------~~v~iw~~~~~~~~~~~~~~~--~~~~~~---~~~~~-~~~~v~~~~~sp~g~~l- 324 (343)
T 2xzm_R 264 NPKLQWVAV-GTD-----------QGVKIFNLMTQSKAPVCTIEA--EPITKA---EGQKG-KNPQCTSLAWNALGKKL- 324 (343)
T ss_dssp CSSSCEEEE-EES-----------SCEEEEESSSCCSCSEEECCC--CSGGGB---TTBCC-SCCCEEEEEECSSSCCE-
T ss_pred CCCCCEEEE-ECC-----------CCEEEEEeCCCCCCceEEeec--Ccchhh---hhhcC-CCCceEEEEECCCCCeE-
Confidence 999987753 322 238888887755422100000 000000 00000 11234567899999866
Q ss_pred EEEEeCCeEEEEEEE
Q 003363 460 LSSIWGSSQVIISVN 474 (826)
Q Consensus 460 ~~~~~~~~~~l~~vd 474 (826)
++...++...+|.++
T Consensus 325 ~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 325 FAGFTDGVIRTFSFE 339 (343)
T ss_dssp EEEETTSEEEEEEEE
T ss_pred EEecCCceEEEEEEE
Confidence 445556666666543
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.30 E-value=9.3e-11 Score=130.46 Aligned_cols=279 Identities=14% Similarity=0.116 Sum_probs=161.5
Q ss_pred cccEEEEeCCC-CCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecC-CCCeEEEEeecC
Q 003363 154 TGASAVVPSPS-GSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNS-DETLIAYVAEEP 229 (826)
Q Consensus 154 ~~~~~~~~SPd-G~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSP-Dg~~ia~~~~~~ 229 (826)
..+...+|+|+ ++.||..+..+ .+.+|+ .++....... .+..+.| .++.|+| |++.|+..+.+.
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg-----~i~lWd~~~~~~~~~~~~-~gH~~~V------~~l~f~p~~~~~l~s~s~D~ 187 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGG-----DIMLWNFGIKDKPTFIKG-IGAGGSI------TGLKFNPLNTNQFYASSMEG 187 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTS-----CEEEECSSCCSCCEEECC-CSSSCCC------CEEEECSSCTTEEEEECSSS
T ss_pred CCEEEEEEeCCCCCEEEEEeCCC-----EEEEEECCCCCceeEEEc-cCCCCCE------EEEEEeCCCCCEEEEEeCCC
Confidence 35889999995 55676655433 467773 3333333322 2334445 8999998 688888887776
Q ss_pred CCCCCCccCCCCCC--CCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCC
Q 003363 230 SPSKPTFSLGSTKG--GSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 307 (826)
Q Consensus 230 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~ 307 (826)
.... |+...... .........+.....|.++....+++.....|.+||+.+..+..+ ......+..++|+|+++
T Consensus 188 ~v~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~--~~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 188 TTRL--QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNL--RMHKKKVTHVALNPCCD 263 (435)
T ss_dssp CEEE--EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCS--BCCSSCEEEEEECTTCS
T ss_pred EEEE--eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEE--ecccceEEeeeecCCCc
Confidence 5543 33211110 011112233445667888855555666778999999988776666 33445678899999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEE
Q 003363 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 387 (826)
Q Consensus 308 ~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~ 387 (826)
. ++.++. .+..|.++|+.... ..........+...+....|||||++|+
T Consensus 264 ~----~~~s~s--------------~d~~v~iwd~~~~~-------------~~~~~~~~~~h~~~v~~~~~spdg~~l~ 312 (435)
T 4e54_B 264 W----FLATAS--------------VDQTVKIWDLRQVR-------------GKASFLYSLPHRHPVNAACFSPDGARLL 312 (435)
T ss_dssp S----EEEEEE--------------TTSBCCEEETTTCC-------------SSSCCSBCCBCSSCEEECCBCTTSSEEE
T ss_pred e----EEEEec--------------CcceeeEEeccccc-------------ccceEEEeeeccccccceeECCCCCeeE
Confidence 8 777652 22367778872100 0111222234556678899999999998
Q ss_pred EEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC--
Q 003363 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-- 465 (826)
Q Consensus 388 f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~-- 465 (826)
..+.+ ..|.+||+.++...... ..... .... ........|++++..+++.....
T Consensus 313 s~~~D-----------~~i~iwd~~~~~~~~~~---------~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~ 368 (435)
T 4e54_B 313 TTDQK-----------SEIRVYSASQWDCPLGL---------IPHPH-RHFQ---HLTPIKAAWHPRYNLIVVGRYPDPN 368 (435)
T ss_dssp EEESS-----------SCEEEEESSSSSSEEEE---------CCCCC-CCCS---SSCCCBCEECSSSSCEEEECCCCTT
T ss_pred EEcCC-----------CEEEEEECCCCccceEE---------ecccc-cccc---cceeEEEEEcCCCCEEEEEEcCCCC
Confidence 76654 35889998775532110 00000 0000 01123456778777665543322
Q ss_pred -------CeEEEEEEECCCCcEEEecC-CCC-C-eeeEEEeecCCEEE
Q 003363 466 -------SSQVIISVNVSSGELLRITP-AES-N-FSWSLLTLDGDNII 503 (826)
Q Consensus 466 -------~~~~l~~vdl~tg~~~~lt~-~~~-~-~~~~~~s~dg~~l~ 503 (826)
....|..+|..+|+...... ... . .+...|+++|..|+
T Consensus 369 ~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~la 416 (435)
T 4e54_B 369 FKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLA 416 (435)
T ss_dssp SCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEE
T ss_pred eEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEE
Confidence 12346777888888765433 222 2 23336899988654
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-10 Score=121.85 Aligned_cols=274 Identities=13% Similarity=0.058 Sum_probs=156.3
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003363 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (826)
Q Consensus 103 ~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (826)
.++|||+.++... ....+.++++... .....+.... ..+...+|+|||+.|+.....+ .+
T Consensus 30 ~~s~~~~~l~s~~---------~dg~i~iw~~~~~-~~~~~~~~h~-----~~v~~~~~~~~~~~l~s~~~d~-----~i 89 (312)
T 4ery_A 30 KFSPNGEWLASSS---------ADKLIKIWGAYDG-KFEKTISGHK-----LGISDVAWSSDSNLLVSASDDK-----TL 89 (312)
T ss_dssp EECTTSSEEEEEE---------TTSCEEEEETTTC-CEEEEECCCS-----SCEEEEEECTTSSEEEEEETTS-----EE
T ss_pred EECCCCCEEEEee---------CCCeEEEEeCCCc-ccchhhccCC-----CceEEEEEcCCCCEEEEECCCC-----EE
Confidence 3489998776542 2234555554221 1122222222 4588999999999999876543 56
Q ss_pred EEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceee
Q 003363 183 ELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (826)
Q Consensus 183 ~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (826)
.+|+ .++....+.. ..+.| ..+.|+||++.|+..+.+.... .|+............+........|.
T Consensus 90 ~vwd~~~~~~~~~~~~---~~~~v------~~~~~~~~~~~l~s~~~d~~i~--iwd~~~~~~~~~~~~~~~~v~~~~~~ 158 (312)
T 4ery_A 90 KIWDVSSGKCLKTLKG---HSNYV------FCCNFNPQSNLIVSGSFDESVR--IWDVKTGKCLKTLPAHSDPVSAVHFN 158 (312)
T ss_dssp EEEETTTCCEEEEEEC---CSSCE------EEEEECSSSSEEEEEETTSCEE--EEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred EEEECCCCcEEEEEcC---CCCCE------EEEEEcCCCCEEEEEeCCCcEE--EEECCCCEEEEEecCCCCcEEEEEEc
Confidence 6773 3333333321 11222 7889999999999888776433 33322222112222333344456778
Q ss_pred cCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEE
Q 003363 261 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 340 (826)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~ 340 (826)
++....+++.....|.+||+.+++............+..++|+|||+. |+..+ .+..|.++
T Consensus 159 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~---------------~d~~i~iw 219 (312)
T 4ery_A 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY----ILAAT---------------LDNTLKLW 219 (312)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSE----EEEEE---------------TTTEEEEE
T ss_pred CCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCE----EEEEc---------------CCCeEEEE
Confidence 775445566667889999998877543211223345677899999997 77665 23478888
Q ss_pred EcccccchhhhhhhhcCCCCCCc-ceecCCCCcc--ccCceec-CCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 341 RVSLYKSEASELELKESSSEDLP-VVNLTESISS--AFFPRFS-PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~--~~~p~~S-pDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
|+ .+++ ...+..+... .....++ ++|++|+..+.+ ..|++||+.+++.
T Consensus 220 d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-----------g~i~vwd~~~~~~ 271 (312)
T 4ery_A 220 DY-----------------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED-----------NLVYIWNLQTKEI 271 (312)
T ss_dssp ET-----------------TTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTT-----------SCEEEEETTTCCE
T ss_pred EC-----------------CCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCC-----------CEEEEEECCCchh
Confidence 88 4443 3344433222 2334455 567766544332 4589999887553
Q ss_pred CCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEE-eCCeEEEEEE
Q 003363 417 FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI-WGSSQVIISV 473 (826)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~-~~~~~~l~~v 473 (826)
.....+ +...+..++|+|+++.|+..+. .++...+|..
T Consensus 272 ~~~~~~-------------------h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 272 VQKLQG-------------------HTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp EEEECC-------------------CSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred hhhhhc-------------------cCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 211111 1112346789999986654332 3455566653
|
| >1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H; HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-12 Score=147.53 Aligned_cols=218 Identities=15% Similarity=0.102 Sum_probs=131.9
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cchHHHHHH-HHCCcEEEEECCCCC-CCCchhhhhcCCCCCCcchH
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFL-SSVGYSLLIVNYRGS-LGFGEEALQSLPGKVGSQDV 652 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~~~~~~~l-a~~G~~Vl~~d~rG~-~g~G~~~~~~~~~~~~~~~~ 652 (826)
+...+|.|.+....++.|+||++|||++..... .+....... ...|++|+.+|||.. .||+........ ..+...+
T Consensus 86 l~l~v~~P~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~~~~~~g~vvv~~nYRlg~~Gf~~~~~~~~~-~~~n~gl 164 (522)
T 1ukc_A 86 LFINVFKPSTATSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQN-GDLNAGL 164 (522)
T ss_dssp CEEEEEEETTCCTTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCCCHHHHHS-SCTTHHH
T ss_pred CEEEEEECCCCCCCCCCCEEEEECCCccccCCccccCcHHHHHhcCCcEEEEEecccccccccccchhcccc-CCCChhH
Confidence 455788887544456789999999998765432 233221111 256999999999942 233322211111 1234458
Q ss_pred HHHHHHHHHHHHcC---CCCCCcEEEEEecchHHHHHHHHHhC----CCceeEEEecCCccchhhhccCCCCCCc---hh
Q 003363 653 NDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA----PDKFVAAAARNPLCNLALMVGTTDIPDW---CY 722 (826)
Q Consensus 653 ~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~a~~~----p~~~~a~v~~~p~~~~~~~~~~~~~~~~---~~ 722 (826)
.|+.++++|+.++. ..|+++|.|+|+|.||+++..++... +.+|+++|+.+|...... ......+ .+
T Consensus 165 ~D~~~al~wv~~ni~~fggDp~~v~i~G~SaGg~~v~~~l~~~~~~~~~lf~~~i~~sg~~~~~~---~~~~~~~~~~~~ 241 (522)
T 1ukc_A 165 LDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWPTQR---TVSEMEFQFERF 241 (522)
T ss_dssp HHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCCCCCC---CSGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhEEEEEEChHHHHHHHHHhCCCccccccchhhhhcCCCcCCcC---CHHHHHHHHHHH
Confidence 99999999998862 37999999999999999887776643 568999999998653211 0000011 11
Q ss_pred hhhccCcCCccCCCCCChhhHHHHhhcCcccc---------cCCCCCc--EEEEEeCCCCCCCcHHHHHHHHHHHhCCCC
Q 003363 723 VESYGSKGKDSFTESPSVEDLTRFHSKSPISH---------ISKVKTP--TIFLLGAQDLRVPVSNGLQYARALREKGVE 791 (826)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~---------~~~i~~P--vLii~G~~D~~vp~~~~~~~~~~l~~~g~~ 791 (826)
....+.. ...+..+.++..++... ......| .+.++...|..+.+++..++.++-+..+++
T Consensus 242 ~~~~gc~--------~~~~~~~~Lr~~~~~~l~~a~~~~~~~~~~~~~~~~~~f~Pv~D~~~l~~~p~~~~~~g~~~~vp 313 (522)
T 1ukc_A 242 VNDTGCS--------SARDSLECLREQDIATIQKGNTGSPFPGGSSSPLPDWYFLPVTDGSLVPDELYNAFDAGNFIKVP 313 (522)
T ss_dssp HHHTTCT--------TCSSHHHHHHHSCHHHHHHHSSCCCCTTCCSSSCCSCCSCCCCCSSSSCSCHHHHHHHTCSCCCC
T ss_pred HHHcCCC--------CHHHHHHHHHcCCHHHHHHHHHhccccccccCcccccccccccCCcccCCCHHHHHhcCCCCCCC
Confidence 1222211 01122223332222111 1112233 556677778777777777777766666778
Q ss_pred EEEEEeCCCCCCCC
Q 003363 792 TKVIVFPNDVHGIE 805 (826)
Q Consensus 792 ~~~~~~p~~~H~~~ 805 (826)
+-+-...+++|.+.
T Consensus 314 ~l~G~~~~Eg~~f~ 327 (522)
T 1ukc_A 314 VLVGDDTDEGSNFA 327 (522)
T ss_dssp EEEEEETBGGGGTS
T ss_pred EEEEeecchhHHhh
Confidence 88778889999775
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-10 Score=128.12 Aligned_cols=288 Identities=15% Similarity=0.118 Sum_probs=168.6
Q ss_pred ccEEEEeCCCCC-eEEEEecCCCCCCeEEEEe---cCCc------eeEEEecCCCcccccc-CCCcccceeecCCCCeEE
Q 003363 155 GASAVVPSPSGS-KLLVVRNPENESPIQFELW---SQSQ------LEKEFHVPQTVHGSVY-ADGWFEGISWNSDETLIA 223 (826)
Q Consensus 155 ~~~~~~~SPdG~-~la~~~~~~~~~~~~~~i~---~~~~------~~~~~~~~~~~~g~v~-~~~~~~~~~wSPDg~~ia 223 (826)
.+...+|||||+ .||..... +.-.+|.+. ..++ ...........+...- ....+..++|||||+.|+
T Consensus 47 ~v~~~~~s~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 124 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGEKN--SVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIV 124 (425)
T ss_dssp CCSEEEECSSCTTEEEEEETB--TEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEE
T ss_pred ceEEEEECCCCCcEEEEecCC--ceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEE
Confidence 588899999999 88876543 333344441 1122 1222221111110000 011238999999999999
Q ss_pred EEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCc-------
Q 003363 224 YVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLS------- 296 (826)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~------- 296 (826)
..+.+.... .|+ ...........+........|.++....++......|.+||+.+++..... ......
T Consensus 125 ~~~~dg~i~--i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~ 200 (425)
T 1r5m_A 125 TGVENGELR--LWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHF-ELKETGGSSINAE 200 (425)
T ss_dssp EEETTSCEE--EEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEE-CCC----------
T ss_pred EEeCCCeEE--EEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe-eccccCccceeec
Confidence 987765433 232 111111222334445556778888555566666789999999888765431 111111
Q ss_pred --------cceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecC
Q 003363 297 --------VGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT 368 (826)
Q Consensus 297 --------~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt 368 (826)
+..+.|+|++. ++..+ ....|+.+|+. .......+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~-----~~~~~---------------~~g~i~~~d~~----------------~~~~~~~~~ 244 (425)
T 1r5m_A 201 NHSGDGSLGVDVEWVDDDK-----FVIPG---------------PKGAIFVYQIT----------------EKTPTGKLI 244 (425)
T ss_dssp -----CCCBSCCEEEETTE-----EEEEC---------------GGGCEEEEETT----------------CSSCSEEEC
T ss_pred cccCCcceeeEEEEcCCCE-----EEEEc---------------CCCeEEEEEcC----------------CCceeeeec
Confidence 67889999855 55444 22378999982 223344555
Q ss_pred CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCC
Q 003363 369 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 448 (826)
Q Consensus 369 ~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~ 448 (826)
.+...+....|+|||+.|+..+.+ ..|++||+.++........ ....+..
T Consensus 245 ~~~~~i~~~~~~~~~~~l~~~~~d-----------~~i~i~d~~~~~~~~~~~~-------------------~~~~i~~ 294 (425)
T 1r5m_A 245 GHHGPISVLEFNDTNKLLLSASDD-----------GTLRIWHGGNGNSQNCFYG-------------------HSQSIVS 294 (425)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETT-----------SCEEEECSSSBSCSEEECC-------------------CSSCEEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCC-----------CEEEEEECCCCccceEecC-------------------CCccEEE
Confidence 666778889999999988766644 3588999877544221110 1113446
Q ss_pred CccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC-CCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003363 449 NPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (826)
Q Consensus 449 ~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 522 (826)
+.|+||+ ++++...++ .|..+|+.+++....... ...+....|+++++.++....+ ..|.+.++..
T Consensus 295 ~~~~~~~--~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~i~~~~~ 361 (425)
T 1r5m_A 295 ASWVGDD--KVISCSMDG--SVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMD----GQVNVYDLKK 361 (425)
T ss_dssp EEEETTT--EEEEEETTS--EEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETT----SCEEEEECHH
T ss_pred EEECCCC--EEEEEeCCC--cEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECC----CeEEEEECCC
Confidence 7899999 444444343 566778888776655443 4456667889998866655432 2477777654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.29 E-value=4.6e-11 Score=144.24 Aligned_cols=264 Identities=9% Similarity=0.047 Sum_probs=164.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
..+...+|||||++||+....+ .+.+|+ .+...+... ...+.| ..+.|||||++|+..+.+...
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g-----~v~iwd~~~~~~~~~~~---~~~~~v------~~~~~s~~~~~l~~~~~dg~i 79 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSG-----RVEIWNYETQVEVRSIQ---VTETPV------RAGKFIARKNWIIVGSDDFRI 79 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTS-----EEEEEETTTTEEEEEEE---CCSSCE------EEEEEEGGGTEEEEEETTSEE
T ss_pred CceEEEEECCCCCEEEEEeCCC-----EEEEEECCCCceEEEEe---cCCCcE------EEEEEeCCCCEEEEEeCCCeE
Confidence 4588999999999999886543 566773 343333333 222223 799999999999998876543
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCC-ceEeccCCCCCCccceEEEee-CCCCC
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG-EVQAVKGIPKSLSVGQVVWAP-LNEGL 309 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g-~~~~l~~~~~~~~~~~~~wSP-Dg~~~ 309 (826)
. .|+............+........|.++....+++.....|.+||+.++ ...... ......+..++|+| ||+.
T Consensus 80 ~--vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~- 155 (814)
T 3mkq_A 80 R--VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF-EGHEHFVMCVAFNPKDPST- 155 (814)
T ss_dssp E--EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEE-ECCSSCEEEEEEETTEEEE-
T ss_pred E--EEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEE-cCCCCcEEEEEEEcCCCCE-
Confidence 3 3332222222223334555567788888555566667789999999876 333321 23345678899999 7776
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC-CccccCceecC--CCCEE
Q 003363 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES-ISSAFFPRFSP--DGKFL 386 (826)
Q Consensus 310 ~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~-~~~~~~p~~Sp--DG~~l 386 (826)
|+..+ .+..|+++|+. .......+..+ ...+....|+| ||+.|
T Consensus 156 ---l~~~~---------------~dg~v~vwd~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 201 (814)
T 3mkq_A 156 ---FASGC---------------LDRTVKVWSLG----------------QSTPNFTLTTGQERGVNYVDYYPLPDKPYM 201 (814)
T ss_dssp ---EEEEE---------------TTSEEEEEETT----------------CSSCSEEEECCCTTCCCEEEECCSTTCCEE
T ss_pred ---EEEEe---------------CCCeEEEEECC----------------CCcceeEEecCCCCCEEEEEEEECCCCCEE
Confidence 66655 33478888872 22233334333 35678899999 99988
Q ss_pred EEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCC
Q 003363 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 466 (826)
Q Consensus 387 ~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~ 466 (826)
+..+.+ ..|.+||+.++..... +.. +...+..+.|+|||+.|+ +...++
T Consensus 202 ~~~~~d-----------g~i~~~d~~~~~~~~~----------~~~---------~~~~v~~~~~~~~~~~l~-~~~~dg 250 (814)
T 3mkq_A 202 ITASDD-----------LTIKIWDYQTKSCVAT----------LEG---------HMSNVSFAVFHPTLPIII-SGSEDG 250 (814)
T ss_dssp EEECTT-----------SEEEEEETTTTEEEEE----------EEC---------CSSCEEEEEECSSSSEEE-EEETTS
T ss_pred EEEeCC-----------CEEEEEECCCCcEEEE----------EcC---------CCCCEEEEEEcCCCCEEE-EEeCCC
Confidence 766643 4689999876543111 000 111344678999999554 444344
Q ss_pred eEEEEEEECCCCcEEEecC-CCCCeeeEEEeecCCEE
Q 003363 467 SQVIISVNVSSGELLRITP-AESNFSWSLLTLDGDNI 502 (826)
Q Consensus 467 ~~~l~~vdl~tg~~~~lt~-~~~~~~~~~~s~dg~~l 502 (826)
. |..+|+.+++...... ....+....+++++..+
T Consensus 251 ~--v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 285 (814)
T 3mkq_A 251 T--LKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKN 285 (814)
T ss_dssp C--EEEEETTTCSEEEEECCSSSSEEEEEECTTCGGG
T ss_pred e--EEEEECCCCcEEEEeecCCCcEEEEEEccCCCce
Confidence 4 5556888877655443 33345556778887754
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-10 Score=123.76 Aligned_cols=272 Identities=11% Similarity=0.115 Sum_probs=158.8
Q ss_pred cccEEEEeCCCC-CeEEEEecCCCCCCeEEEEec---CC-ceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeec
Q 003363 154 TGASAVVPSPSG-SKLLVVRNPENESPIQFELWS---QS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 228 (826)
Q Consensus 154 ~~~~~~~~SPdG-~~la~~~~~~~~~~~~~~i~~---~~-~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~ 228 (826)
..+...+|+|++ +.|+..+.. + .+.+|+ .. ........-.+..+.| ..+.|+|||++|+..+.+
T Consensus 18 ~~V~~l~~~~~~~~~l~s~s~D--~---~v~~W~~~~~~~~~~~~~~~~~~h~~~v------~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 18 GWVTSLATSAGQPNLLLSASRD--K---TLISWKLTGDDQKFGVPVRSFKGHSHIV------QDCTLTADGAYALSASWD 86 (319)
T ss_dssp SCEEEEEECSSCTTEEEEEETT--S---EEEEEEEEEETTEEEEEEEEEECCSSCE------EEEEECTTSSEEEEEETT
T ss_pred ceEEEEEccCCCccEEEEecCC--c---cEEEecCCCCCccccccceEEeCCcccE------EEEEECCCCCEEEEEeCC
Confidence 458889999987 556555443 2 455552 11 1111111112222333 789999999999998877
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCC
Q 003363 229 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308 (826)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~ 308 (826)
...+ .|+............+........|.++....+++..+..|.+||+.+..+..+ ......+..+.|+|+++.
T Consensus 87 ~~v~--~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~--~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 87 KTLR--LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATL--LGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp SEEE--EEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEE--CCCSSCEEEEEECCC---
T ss_pred CEEE--EEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE--eccCCcEEEEEEccCCCC
Confidence 7544 333222222222334445555667887755556666778999999988777776 344456778899996431
Q ss_pred Ccc--EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCE
Q 003363 309 LHQ--YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKF 385 (826)
Q Consensus 309 ~~~--~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~ 385 (826)
... .|+..+ .+..|..+|+ ...+ ...+..+...+....|||||++
T Consensus 163 ~~~~~~l~s~~---------------~d~~i~~wd~-----------------~~~~~~~~~~~h~~~v~~~~~sp~g~~ 210 (319)
T 3frx_A 163 DDDSVTIISAG---------------NDKMVKAWNL-----------------NQFQIEADFIGHNSNINTLTASPDGTL 210 (319)
T ss_dssp ---CCEEEEEE---------------TTSCEEEEET-----------------TTTEEEEEECCCCSCEEEEEECTTSSE
T ss_pred CCCccEEEEEe---------------CCCEEEEEEC-----------------CcchhheeecCCCCcEEEEEEcCCCCE
Confidence 000 044333 3347888888 3333 3456667777888999999999
Q ss_pred EEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC
Q 003363 386 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 465 (826)
Q Consensus 386 l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~ 465 (826)
|+..+.+ ..|.+||+.++...... .. ...+..++|+|||..|+... .
T Consensus 211 l~s~~~d-----------g~i~iwd~~~~~~~~~~----------~~----------~~~v~~~~~sp~~~~la~~~--~ 257 (319)
T 3frx_A 211 IASAGKD-----------GEIMLWNLAAKKAMYTL----------SA----------QDEVFSLAFSPNRYWLAAAT--A 257 (319)
T ss_dssp EEEEETT-----------CEEEEEETTTTEEEEEE----------EC----------CSCEEEEEECSSSSEEEEEE--T
T ss_pred EEEEeCC-----------CeEEEEECCCCcEEEEe----------cC----------CCcEEEEEEcCCCCEEEEEc--C
Confidence 8866644 46899998775432110 00 01234678999998665432 3
Q ss_pred CeEEEEEEECCCCcEE-EecCC--------CCCeeeEEEeecCCEEEEEEe
Q 003363 466 SSQVIISVNVSSGELL-RITPA--------ESNFSWSLLTLDGDNIIAVSS 507 (826)
Q Consensus 466 ~~~~l~~vdl~tg~~~-~lt~~--------~~~~~~~~~s~dg~~l~~~~s 507 (826)
....+| +++++... .+... ...+....|+|||+.|+....
T Consensus 258 ~~i~v~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~ 306 (319)
T 3frx_A 258 TGIKVF--SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306 (319)
T ss_dssp TEEEEE--EETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEET
T ss_pred CCcEEE--EeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeec
Confidence 444455 44444332 22211 112334578999987765543
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-10 Score=127.75 Aligned_cols=268 Identities=10% Similarity=0.081 Sum_probs=145.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCc---------eeEEEecCCCccc------cccCCCcccceeec
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQ---------LEKEFHVPQTVHG------SVYADGWFEGISWN 216 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~---------~~~~~~~~~~~~g------~v~~~~~~~~~~wS 216 (826)
..+...+|||||++||.....+ .+.+|+ .+. ......+. +... .+-.++.+..+.|+
T Consensus 29 ~~V~~v~~s~~g~~la~g~~dg-----~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~l~~~ 102 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKGG-----RVVIFQQEQENKIQSHSRGEYNVYSTFQ-SHEPEFDYLKSLEIEEKINKIRWL 102 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETTS-----EEEEEEECC-----CCCCCCEEEEEEEE-CCCCEEEGGGTEEECCCCCEEEEC
T ss_pred CcEEEEEECCCCCEEEEEcCCC-----eEEEEEecCCCCCCcccccceeEecccc-cccccccccccccccCceEEEEEc
Confidence 4589999999999999876543 455662 222 00111111 1110 00000123899999
Q ss_pred CCC--CeEEEEeecCCCCCCCccCCCC------C---CC-----------------------------CCCccCCCCCCc
Q 003363 217 SDE--TLIAYVAEEPSPSKPTFSLGST------K---GG-----------------------------SSDKDCNSWKGQ 256 (826)
Q Consensus 217 PDg--~~ia~~~~~~~~~~~~~~~~~~------~---~~-----------------------------~~~~~~~~~~~~ 256 (826)
|++ ..|+..+.+.....+....... . .+ .....+......
T Consensus 103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 999 7788877766543222111000 0 00 001234555567
Q ss_pred ceeecCCCccCCCccCceEEEEEcc-CCceEec-c-----CCCCCCccceEEEeeCC-CCCccEEEEEeecCcceeeeee
Q 003363 257 GDWEEDWGETYAGKRQPSLFVININ-SGEVQAV-K-----GIPKSLSVGQVVWAPLN-EGLHQYLVFVGWSSETRKLGIK 328 (826)
Q Consensus 257 ~~~~~d~g~~~~~~~~~~l~v~d~~-~g~~~~l-~-----~~~~~~~~~~~~wSPDg-~~~~~~lvf~~~~~~~~~~g~~ 328 (826)
..|.++....+++ .+..|.+||+. +++...+ . -......+..++|+||| +. |+..+
T Consensus 183 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~----l~s~~----------- 246 (447)
T 3dw8_B 183 ISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNT----FVYSS----------- 246 (447)
T ss_dssp EEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTE----EEEEE-----------
T ss_pred EEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcE----EEEEe-----------
Confidence 7888884334444 68899999998 3433321 0 01223457789999999 54 44444
Q ss_pred eeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-----ceecCCCCc------------cccCceecCCCCEEEEEec
Q 003363 329 YCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-----VVNLTESIS------------SAFFPRFSPDGKFLVFLSA 391 (826)
Q Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~Lt~~~~------------~~~~p~~SpDG~~l~f~s~ 391 (826)
.+..|.++|+ .++. ...+..+.. .+....|+|||++|+..+.
T Consensus 247 ----~dg~i~iwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 305 (447)
T 3dw8_B 247 ----SKGTIRLCDM-----------------RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY 305 (447)
T ss_dssp ----TTSCEEEEET-----------------TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES
T ss_pred ----CCCeEEEEEC-----------------cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC
Confidence 2347888887 3333 344544443 6788999999999885543
Q ss_pred cCCCCCCCCcccceEEEEeCCC-CCCCCcccceeeeeeee-eccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEE
Q 003363 392 KSSVDSGAHSATDSLHRIDWPT-NGNFSSLEKIVDVIPVV-QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (826)
Q Consensus 392 ~~~~~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~-~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (826)
..|.+||+.+ +...........+..-. ....... + .....++|+|||+.| ++...+ ..
T Consensus 306 ------------~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---i--~~~~~~~~s~~~~~l-~s~s~d--g~ 365 (447)
T 3dw8_B 306 ------------LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC---I--FDKFECCWNGSDSVV-MTGSYN--NF 365 (447)
T ss_dssp ------------SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG---G--GCCCCEEECTTSSEE-EEECST--TE
T ss_pred ------------CeEEEEeCCCCccccceeeccccccccccccccccc---c--ccceEEEECCCCCEE-EEeccC--CE
Confidence 4589999876 33321111110000000 0000000 0 012247899999977 444333 45
Q ss_pred EEEEECCCCcEEEec
Q 003363 470 IISVNVSSGELLRIT 484 (826)
Q Consensus 470 l~~vdl~tg~~~~lt 484 (826)
|+.+|+.+++...+.
T Consensus 366 v~iwd~~~~~~~~~~ 380 (447)
T 3dw8_B 366 FRMFDRNTKRDITLE 380 (447)
T ss_dssp EEEEETTTCCEEEEE
T ss_pred EEEEEcCCCcceeee
Confidence 666788888876654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.28 E-value=9.8e-11 Score=124.72 Aligned_cols=227 Identities=11% Similarity=0.008 Sum_probs=137.4
Q ss_pred eEEEEe-cCCceeEEEecCC---CccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCC
Q 003363 180 IQFELW-SQSQLEKEFHVPQ---TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 255 (826)
Q Consensus 180 ~~~~i~-~~~~~~~~~~~~~---~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (826)
.+..++ ..++..+.+.... .. ..++|||||++|++....
T Consensus 12 ~v~~~d~~~~~~~~~~~~~~~~~~~----------~~~~~s~dg~~l~v~~~~--------------------------- 54 (337)
T 1pby_B 12 KLVVIDTEKMAVDKVITIADAGPTP----------MVPMVAPGGRIAYATVNK--------------------------- 54 (337)
T ss_dssp EEEEEETTTTEEEEEEECTTCTTCC----------CCEEECTTSSEEEEEETT---------------------------
T ss_pred eEEEEECCCCcEEEEEEcCCCCCCc----------cceEEcCCCCEEEEEeCC---------------------------
Confidence 455444 3455555555443 23 689999999988776432
Q ss_pred cceeecCCCccCCCccCceEEEEEccCCceEe-ccCCCC----CCccceEEEeeCCCCCccEEEEEeecCcceeeeeeee
Q 003363 256 QGDWEEDWGETYAGKRQPSLFVININSGEVQA-VKGIPK----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYC 330 (826)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~-l~~~~~----~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~ 330 (826)
...|++||+.+++... +. ... ...+..++|+|||+. |++........+...
T Consensus 55 ----------------~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~----l~~~~~~~~~~~~~~--- 110 (337)
T 1pby_B 55 ----------------SESLVKIDLVTGETLGRID-LSTPEERVKSLFGAALSPDGKT----LAIYESPVRLELTHF--- 110 (337)
T ss_dssp ----------------TTEEEEEETTTCCEEEEEE-CCBTTEEEECTTCEEECTTSSE----EEEEEEEEEECSSCE---
T ss_pred ----------------CCeEEEEECCCCCeEeeEE-cCCcccccccccceEECCCCCE----EEEEecccccccccc---
Confidence 2579999999888654 32 111 114567899999997 777642100000000
Q ss_pred ccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEe
Q 003363 331 YNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 410 (826)
Q Consensus 331 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d 410 (826)
......|+++|+ .+++.............+.|||||++|++.+ ..|+++|
T Consensus 111 ~~~~~~i~v~d~-----------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-------------~~i~~~d 160 (337)
T 1pby_B 111 EVQPTRVALYDA-----------------ETLSRRKAFEAPRQITMLAWARDGSKLYGLG-------------RDLHVMD 160 (337)
T ss_dssp EECCCEEEEEET-----------------TTTEEEEEEECCSSCCCEEECTTSSCEEEES-------------SSEEEEE
T ss_pred cccCceEEEEEC-----------------CCCcEEEEEeCCCCcceeEECCCCCEEEEeC-------------CeEEEEE
Confidence 002358999998 5555443333334467789999999987762 2499999
Q ss_pred CCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeE---------------------E
Q 003363 411 WPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ---------------------V 469 (826)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~---------------------~ 469 (826)
+.+++... .+.... ......|+|||+.|++.....+.. .
T Consensus 161 ~~~~~~~~----------~~~~~~----------~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (337)
T 1pby_B 161 PEAGTLVE----------DKPIQS----------WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG 220 (337)
T ss_dssp TTTTEEEE----------EECSTT----------TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE
T ss_pred CCCCcEee----------eeeccc----------cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccc
Confidence 88754321 111000 012447899998776554322222 6
Q ss_pred EEEEECCCCcEEEecCCC--CCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 470 IISVNVSSGELLRITPAE--SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 470 l~~vdl~tg~~~~lt~~~--~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
|+.+|+.+++...+.... .......+++|++.+++. . ..|++.++.+.
T Consensus 221 v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~-----~~v~~~d~~~~ 270 (337)
T 1pby_B 221 LLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-Y-----NVLESFDLEKN 270 (337)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-E-----SEEEEEETTTT
T ss_pred eEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-C-----CeEEEEECCCC
Confidence 899999999876443322 233446889999987766 1 56888886543
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.28 E-value=9.6e-12 Score=137.43 Aligned_cols=279 Identities=10% Similarity=0.003 Sum_probs=161.5
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~ 235 (826)
...++|||||++|+.....+ .+.+|+....... .. ...++ ......|+|||++|+..+.+.... .
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~-----~v~i~d~~~~~~~-~~-~~~~~------~~~~~~~~~~~~~l~~~~~dg~i~--i 123 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDG-----HDFLFNTIIRDGS-KM-LKRAD------YTAVDTAKLQMRRFILGTTEGDIK--V 123 (420)
T ss_dssp CTTCEEEEEETTEEEEEETT-----EEEEEECCSEETT-TT-SCSCC------EEEEEEECSSSCEEEEEETTSCEE--E
T ss_pred ccceeeeecCCeEEEEEcCC-----cEEEEEeccccee-eE-EecCC------ceEEEEEecCCCEEEEEECCCCEE--E
Confidence 44679999999999887643 4556632211110 00 01111 124557999999999988766443 3
Q ss_pred ccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceE-eccCCCCCCccceEEEeeCCCCCccEEE
Q 003363 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (826)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~-~l~~~~~~~~~~~~~wSPDg~~~~~~lv 314 (826)
|+............+........|.++....+++..+..|.+||+.+++.. .+ ......+..++|+|||+. |+
T Consensus 124 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~----l~ 197 (420)
T 3vl1_A 124 LDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL--IGHRATVTDIAIIDRGRN----VL 197 (420)
T ss_dssp ECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE--ECCSSCEEEEEEETTTTE----EE
T ss_pred EeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE--cCCCCcEEEEEEcCCCCE----EE
Confidence 332222222223345555667788888555666667789999999887644 44 234456788999999997 77
Q ss_pred EEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc-eecC------------------------C
Q 003363 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLT------------------------E 369 (826)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt------------------------~ 369 (826)
..+ .+..|.++|+ .+++. ..+. .
T Consensus 198 s~~---------------~d~~v~iwd~-----------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 245 (420)
T 3vl1_A 198 SAS---------------LDGTIRLWEC-----------------GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEI 245 (420)
T ss_dssp EEE---------------TTSCEEEEET-----------------TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGG
T ss_pred EEc---------------CCCcEEEeEC-----------------CCCceeEEeecCCCCCCCccEEEEecCCcceeeec
Confidence 665 2235667776 22221 1111 1
Q ss_pred CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCC
Q 003363 370 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 449 (826)
Q Consensus 370 ~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 449 (826)
....+....|||||+.|+..+.+ ..|.+||+.++...... . .. +...+..+
T Consensus 246 ~~~~v~~~~~s~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~---------~-~~--------~~~~v~~~ 296 (420)
T 3vl1_A 246 STSKKNNLEFGTYGKYVIAGHVS-----------GVITVHNVFSKEQTIQL---------P-SK--------FTCSCNSL 296 (420)
T ss_dssp CCCCCCTTCSSCTTEEEEEEETT-----------SCEEEEETTTCCEEEEE---------C-CT--------TSSCEEEE
T ss_pred ccCcccceEEcCCCCEEEEEcCC-----------CeEEEEECCCCceeEEc---------c-cc--------cCCCceeE
Confidence 23456778999999998776644 35899998775532110 0 00 11234577
Q ss_pred ccccCCCEEEEEEEeCCeEEEEEEECCCCc--EEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003363 450 PWLSDGCTMLLSSIWGSSQVIISVNVSSGE--LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (826)
Q Consensus 450 ~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~--~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 522 (826)
.|+|||+.++++...++ .|..+|+.+++ +..+...........+.++++ ++++.+.. ..+.+.++..
T Consensus 297 ~~~~~~~~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d---~~v~iw~~~~ 365 (420)
T 3vl1_A 297 TVDGNNANYIYAGYENG--MLAQWDLRSPECPVGEFLINEGTPINNVYFAAGA-LFVSSGFD---TSIKLDIISD 365 (420)
T ss_dssp EECSSCTTEEEEEETTS--EEEEEETTCTTSCSEEEEESTTSCEEEEEEETTE-EEEEETTT---EEEEEEEECC
T ss_pred EEeCCCCCEEEEEeCCC--eEEEEEcCCCcCchhhhhccCCCCceEEEeCCCC-EEEEecCC---ccEEEEeccC
Confidence 89999984445554444 45666887764 455544333223334556654 44443322 2355555543
|
| >2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS, non-ribosomal peptide synthetase, type II thioesterase, antibiotic biosynthesis; NMR {Bacillus subtilis} PDB: 2ron_A | Back alignment and structure |
|---|
Probab=99.27 E-value=4.5e-12 Score=128.83 Aligned_cols=209 Identities=16% Similarity=0.164 Sum_probs=112.3
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (826)
+..|.||++||.+.. ...|..++..|+ .+|.|+++|+||. |.+.. ....|+.+.++.+.+.-.+.
T Consensus 11 ~~~~~lv~lhg~g~~--~~~~~~~~~~L~-~~~~vi~~Dl~Gh---G~S~~---------~~~~~~~~~~~~~~~~l~~~ 75 (242)
T 2k2q_B 11 SEKTQLICFPFAGGY--SASFRPLHAFLQ-GECEMLAAEPPGH---GTNQT---------SAIEDLEELTDLYKQELNLR 75 (242)
T ss_dssp TCCCEEESSCCCCHH--HHHHHHHHHHHC-CSCCCEEEECCSS---CCSCC---------CTTTHHHHHHHHTTTTCCCC
T ss_pred CCCceEEEECCCCCC--HHHHHHHHHhCC-CCeEEEEEeCCCC---CCCCC---------CCcCCHHHHHHHHHHHHHhh
Confidence 445678999996644 446777777775 4799999999994 43311 02356666666655442222
Q ss_pred -CCcEEEEEecchHHHHHHHHHh------CCCceeEEEecCCccchhhhccCCCCCCchhhhhccC-cCC-c------cC
Q 003363 670 -PSKVTVVGGSHGGFLTTHLIGQ------APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS-KGK-D------SF 734 (826)
Q Consensus 670 -~~rv~l~G~S~GG~~a~~~a~~------~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~------~~ 734 (826)
.+++.|+||||||.+++.+|.+ +|+.+-......|....... .......+...+.. ... . ..
T Consensus 76 ~~~~~~lvGhSmGG~iA~~~A~~~~~~~~~p~~v~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (242)
T 2k2q_B 76 PDRPFVLFGHSMGGMITFRLAQKLEREGIFPQAVIISAIQPPHIQRKKV---SHLPDDQFLDHIIQLGGMPAELVENKEV 152 (242)
T ss_dssp CCSSCEEECCSSCCHHHHHHHHHHHHHHCSSCSEEEEEEECSCCCSCCC---SSCTTHHHHHTTCCTTCCCCTTTHHHHT
T ss_pred cCCCEEEEeCCHhHHHHHHHHHHHHHcCCCCCEEEEECCCCCCCCcccc---cCCCHHHHHHHHHHhCCCChHHhcCHHH
Confidence 2689999999999999999876 57654211111121110000 00000000000000 000 0 00
Q ss_pred C--CCCCh-hhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHH
Q 003363 735 T--ESPSV-EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 811 (826)
Q Consensus 735 ~--~~~~~-~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~ 811 (826)
. ..+.. ........... ..+.++++|+|+++|++|..++ .... .+.+.-...+++++++ ||.....+. .
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~-~~l~~i~~P~lvi~G~~D~~~~-~~~~----~~~~~~~~~~~~~~~~-gH~~~~e~p-~ 224 (242)
T 2k2q_B 153 MSFFLPSFRSDYRALEQFEL-YDLAQIQSPVHVFNGLDDKKCI-RDAE----GWKKWAKDITFHQFDG-GHMFLLSQT-E 224 (242)
T ss_dssp TTTCCSCHHHHHHHHTCCCC-SCCTTCCCSEEEEEECSSCCHH-HHHH----HHHTTCCCSEEEEEEC-CCSHHHHHC-H
T ss_pred HHHHHHHHHHHHHHHHhccc-CCCCccCCCEEEEeeCCCCcCH-HHHH----HHHHHhcCCeEEEEeC-CceeEcCCH-H
Confidence 0 00111 11111111111 1256789999999999998753 2222 2333222345777875 897654433 4
Q ss_pred HHHHHHHHHHHHH
Q 003363 812 ESFLNIGLWFKKY 824 (826)
Q Consensus 812 ~~~~~i~~w~~~~ 824 (826)
++...+.+|+++.
T Consensus 225 ~~~~~i~~fl~~~ 237 (242)
T 2k2q_B 225 EVAERIFAILNQH 237 (242)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcc
Confidence 7788899998753
|
| >3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase, thioesterase, norsolorinic acid, P polyketide, acyltransferase; 1.70A {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=99.26 E-value=3e-11 Score=124.66 Aligned_cols=212 Identities=13% Similarity=0.057 Sum_probs=115.4
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCC
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (826)
.+..|.||++||++.. ...|..... | ..+|.|+++|++|. +.... ....++++.+.+..+++.- .
T Consensus 18 ~~~~~~lv~lhg~~~~--~~~~~~~~~-l-~~~~~v~~~d~~G~---~~~~~-------~~~~~~~~~~~~~~~i~~~-~ 82 (265)
T 3ils_A 18 MVARKTLFMLPDGGGS--AFSYASLPR-L-KSDTAVVGLNCPYA---RDPEN-------MNCTHGAMIESFCNEIRRR-Q 82 (265)
T ss_dssp TTSSEEEEEECCTTCC--GGGGTTSCC-C-SSSEEEEEEECTTT---TCGGG-------CCCCHHHHHHHHHHHHHHH-C
T ss_pred CCCCCEEEEECCCCCC--HHHHHHHHh-c-CCCCEEEEEECCCC---CCCCC-------CCCCHHHHHHHHHHHHHHh-C
Confidence 3456889999997765 445666556 5 67899999999994 22210 1123444444333333321 1
Q ss_pred CCCcEEEEEecchHHHHHHHHH---hCCCceeEEEecCCccchhhhccCCCCCC--chhhhhccCcCC----c--cCCCC
Q 003363 669 NPSKVTVVGGSHGGFLTTHLIG---QAPDKFVAAAARNPLCNLALMVGTTDIPD--WCYVESYGSKGK----D--SFTES 737 (826)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~a~---~~p~~~~a~v~~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~--~~~~~ 737 (826)
...++.|+|||+||.++..++. .++++++++|+.++...... ...+. ..+......... . .-...
T Consensus 83 ~~~~~~l~GhS~Gg~ia~~~a~~l~~~~~~v~~lvl~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (265)
T 3ils_A 83 PRGPYHLGGWSSGGAFAYVVAEALVNQGEEVHSLIIIDAPIPQAM----EQLPRAFYEHCNSIGLFATQPGASPDGSTEP 158 (265)
T ss_dssp SSCCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCSSCCC----CCCCHHHHHHHHHTTTTTTSSSSCSSSCSCC
T ss_pred CCCCEEEEEECHhHHHHHHHHHHHHhCCCCceEEEEEcCCCCCcc----cccCHHHHHHHHHHHHhCCCccccccCCHHH
Confidence 2358999999999999999987 67888999988876432100 00000 000000000000 0 00000
Q ss_pred CCh---hhHHHHhhcCc--ccccCCCCCcEE-EEEeCC---CCCCC--------------cHHHHHHHHHHHhCCCCEEE
Q 003363 738 PSV---EDLTRFHSKSP--ISHISKVKTPTI-FLLGAQ---DLRVP--------------VSNGLQYARALREKGVETKV 794 (826)
Q Consensus 738 ~~~---~~~~~~~~~sp--~~~~~~i~~PvL-ii~G~~---D~~vp--------------~~~~~~~~~~l~~~g~~~~~ 794 (826)
... .....+..... .....++++|++ +++|++ |..++ ......+.+.+. +.++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~~lii~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~--~~~~~~ 236 (265)
T 3ils_A 159 PSYLIPHFTAVVDVMLDYKLAPLHARRMPKVGIVWAADTVMDERDAPKMKGMHFMIQKRTEFGPDGWDTIMP--GASFDI 236 (265)
T ss_dssp CTTHHHHHHHHHHHTTTCCCCCCCCSSCCEEEEEEEEECSSCTTTSCCCSSCCTTTSCCCCCSCTTHHHHST--TCCEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccCCCCeEEEEEccCCCCccccCccccCcchhhccccccCcchHHHhCC--ccceeE
Confidence 000 00111111111 112346889977 999999 99873 333333333222 136899
Q ss_pred EEeCCCCCCCCC-CCCHHHHHHHHHHHH
Q 003363 795 IVFPNDVHGIER-PQSDFESFLNIGLWF 821 (826)
Q Consensus 795 ~~~p~~~H~~~~-~~~~~~~~~~i~~w~ 821 (826)
++++|+||.+.. .+...++.+.|.+||
T Consensus 237 ~~i~gagH~~~~~~e~~~~v~~~i~~fL 264 (265)
T 3ils_A 237 VRADGANHFTLMQKEHVSIISDLIDRVM 264 (265)
T ss_dssp EEEEEEETTGGGSTTTTHHHHHHHHHHT
T ss_pred EEcCCCCcceeeChhhHHHHHHHHHHHh
Confidence 999999998762 233335555555554
|
| >1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A* 1tcc_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-11 Score=128.74 Aligned_cols=214 Identities=14% Similarity=0.090 Sum_probs=124.7
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCcc-ch-HHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHH
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~-~~-~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~ 653 (826)
+.+.++.|.++. .+..+.||++||.... ... |. .....|+++||.|+.+|+||. |... .....+
T Consensus 16 l~~~i~~p~~~~-~~~~~~VvllHG~~~~--~~~~~~~~l~~~L~~~G~~v~~~d~~g~---g~~~--------~~~~~~ 81 (317)
T 1tca_A 16 LDAGLTCQGASP-SSVSKPILLVPGTGTT--GPQSFDSNWIPLSTQLGYTPCWISPPPF---MLND--------TQVNTE 81 (317)
T ss_dssp HHHTEEETTBCT-TSCSSEEEEECCTTCC--HHHHHTTTHHHHHHTTTCEEEEECCTTT---TCSC--------HHHHHH
T ss_pred HhheeeCCCCCC-CCCCCeEEEECCCCCC--cchhhHHHHHHHHHhCCCEEEEECCCCC---CCCc--------HHHHHH
Confidence 334466676543 2344669999997654 233 65 677889999999999999984 3211 012357
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCC---CceeEEEecCCccchhhhccCCCCCCchhhhhccCcC
Q 003363 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 730 (826)
Q Consensus 654 D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (826)
++.+.++++.+.. ..++|.|+|||+||.++.+++..+| ++++++|+++|.......... ...+....
T Consensus 82 ~l~~~i~~~~~~~--g~~~v~lVGhS~GG~va~~~~~~~~~~~~~v~~lV~l~~~~~g~~~~~~--------~~~~~~~~ 151 (317)
T 1tca_A 82 YMVNAITALYAGS--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKGTVLAGP--------LDALAVSA 151 (317)
T ss_dssp HHHHHHHHHHHHT--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTTCBGGGHH--------HHHTTCBC
T ss_pred HHHHHHHHHHHHh--CCCCEEEEEEChhhHHHHHHHHHcCccchhhhEEEEECCCCCCCcchhh--------hhhhhhcC
Confidence 7888888887763 3478999999999999999888775 789999999886532211100 00000000
Q ss_pred CccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHH--HHHHHHHHHhCCCCEEEEEe-------CCCC
Q 003363 731 KDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSN--GLQYARALREKGVETKVIVF-------PNDV 801 (826)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~--~~~~~~~l~~~g~~~~~~~~-------p~~~ 801 (826)
...............+.... .....+|+++++|+.|..|++.. +......+.. .+.+.+ ++.+
T Consensus 152 ~~~~~~~~~s~f~~~L~~~~----~~~~~vp~~~i~g~~D~iV~p~~~~g~~~~~~l~~----a~~~~~~~~~~~~~~~g 223 (317)
T 1tca_A 152 PSVWQQTTGSALTTALRNAG----GLTQIVPTTNLYSATDEIVQPQVSNSPLDSSYLFN----GKNVQAQAVCGPLFVID 223 (317)
T ss_dssp HHHHHTBTTCHHHHHHHHTT----TTBCSSCEEEEECTTCSSSCCCCSSSTTSTTCCBT----SEEEEHHHHHCTTCCCC
T ss_pred chHHhhCcCcHHHHHHHhcC----CCCCCCCEEEEEeCCCCeECCccccccchhhhccC----CccEEeeeccCCCCccC
Confidence 00000000001111111110 01246899999999999998766 2211122221 122222 5788
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH
Q 003363 802 HGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 802 H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
|..... +. +.+..+++||+.
T Consensus 224 H~~~l~-~p-~~~~~v~~~L~~ 243 (317)
T 1tca_A 224 HAGSLT-SQ-FSYVVGRSALRS 243 (317)
T ss_dssp TTHHHH-BH-HHHHHHHHHHHC
T ss_pred cccccC-CH-HHHHHHHHHhcC
Confidence 964322 22 456788888864
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.26 E-value=6.3e-10 Score=120.29 Aligned_cols=235 Identities=9% Similarity=0.084 Sum_probs=139.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
..+...+|||||+.|++....+ .+.+| ..++...+..+. ...+.| ..+.|+|||+.|+..+.+
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~-----~v~i~~~~~~~~~~~~~~~-~h~~~v------~~~~~~~~~~~l~~~~~d--- 73 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNH-----EVHIYEKSGNKWVQVHELK-EHNGQV------TGVDWAPDSNRIVTCGTD--- 73 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSS-----EEEEEEEETTEEEEEEEEE-CCSSCE------EEEEEETTTTEEEEEETT---
T ss_pred CCeEEEEECCCCCEEEEEeCCC-----EEEEEeCCCCcEEeeeeec-CCCCcc------cEEEEeCCCCEEEEEcCC---
Confidence 3588899999999998874432 45556 333311222221 222223 799999999999886532
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEecc-CCCCCCccceEEEeeCCCCCc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~~~~wSPDg~~~~ 310 (826)
..|.+||+.+++..... -......+..+.|+|||+.
T Consensus 74 -----------------------------------------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-- 110 (372)
T 1k8k_C 74 -----------------------------------------RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK-- 110 (372)
T ss_dssp -----------------------------------------SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSE--
T ss_pred -----------------------------------------CeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCE--
Confidence 46899999888743321 1233456788999999997
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc----ceec-CCCCccccCceecCCCCE
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP----VVNL-TESISSAFFPRFSPDGKF 385 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~----~~~L-t~~~~~~~~p~~SpDG~~ 385 (826)
|+..+ .+..|+++|+ ..+. ...+ ..+...+....|+|||++
T Consensus 111 --l~~~~---------------~d~~v~i~d~-----------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (372)
T 1k8k_C 111 --FAVGS---------------GSRVISICYF-----------------EQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 156 (372)
T ss_dssp --EEEEE---------------TTSSEEEEEE-----------------ETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred --EEEEe---------------CCCEEEEEEe-----------------cCCCcceeeeeeecccCCCeeEEEEcCCCCE
Confidence 77665 2235777776 2222 2233 334566888999999998
Q ss_pred EEEEeccCCCCCCCCcccceEEEEeCCCCCCCCccc--------ceeeeeeeeeccCCCCCcccccCCCCCCccccCCCE
Q 003363 386 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE--------KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 457 (826)
Q Consensus 386 l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~ 457 (826)
|+..+.+ ..|++||+.......... ........+. + ....+..+.|+|||+.
T Consensus 157 l~~~~~d-----------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~v~~~~~~~~~~~ 216 (372)
T 1k8k_C 157 LAAGSCD-----------FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS--------S-SCGWVHGVCFSANGSR 216 (372)
T ss_dssp EEEEETT-----------SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC--------C-CSSCEEEEEECSSSSE
T ss_pred EEEEcCC-----------CCEEEEEcccccccccccccccccccchhhheEecC--------C-CCCeEEEEEECCCCCE
Confidence 8876644 358888865322110000 0000111110 0 1123457789999986
Q ss_pred EEEEEEeCCeEEEEEEECCCCcEEEe-cCCCCCeeeEEEeecCCEEE
Q 003363 458 MLLSSIWGSSQVIISVNVSSGELLRI-TPAESNFSWSLLTLDGDNII 503 (826)
Q Consensus 458 l~~~~~~~~~~~l~~vdl~tg~~~~l-t~~~~~~~~~~~s~dg~~l~ 503 (826)
|+.. ..++ .|..+|+.+++.... ......+....|++++..++
T Consensus 217 l~~~-~~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 260 (372)
T 1k8k_C 217 VAWV-SHDS--TVCLADADKKMAVATLASETLPLLAVTFITESSLVA 260 (372)
T ss_dssp EEEE-ETTT--EEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEE
T ss_pred EEEE-eCCC--EEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEE
Confidence 6544 3344 466667777765543 33333556678888876443
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.6e-11 Score=130.70 Aligned_cols=211 Identities=13% Similarity=0.096 Sum_probs=118.3
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCC-CCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKEN-ENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~-~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (826)
++|||+.++... ....+.++++.+.. .....+.... ..+...+|||||++|+..+..+ .+
T Consensus 19 ~s~~g~~l~~~~---------~d~~i~iw~~~~~~~~~~~~~~~h~-----~~v~~~~~s~~~~~l~s~s~d~-----~v 79 (377)
T 3dwl_C 19 FNSQRTEFVTTT---------ATNQVELYEQDGNGWKHARTFSDHD-----KIVTCVDWAPKSNRIVTCSQDR-----NA 79 (377)
T ss_dssp ECSSSSEEECCC---------SSSCBCEEEEETTEEEECCCBCCCS-----SCEEEEEECTTTCCEEEEETTS-----SE
T ss_pred ECCCCCEEEEec---------CCCEEEEEEccCCceEEEEEEecCC-----ceEEEEEEeCCCCEEEEEeCCC-----eE
Confidence 378998776532 23345556654321 1222333222 4688999999999999876543 35
Q ss_pred EEec--CCc-eeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCccee
Q 003363 183 ELWS--QSQ-LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (826)
Q Consensus 183 ~i~~--~~~-~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (826)
.+|+ .+. ......+ ....+.| ..+.|+|||+.|+..+.+
T Consensus 80 ~vwd~~~~~~~~~~~~~-~~~~~~v------~~~~~~~~~~~l~~~~~d------------------------------- 121 (377)
T 3dwl_C 80 YVYEKRPDGTWKQTLVL-LRLNRAA------TFVRWSPNEDKFAVGSGA------------------------------- 121 (377)
T ss_dssp EEC------CCCCEEEC-CCCSSCE------EEEECCTTSSCCEEEESS-------------------------------
T ss_pred EEEEcCCCCceeeeeEe-cccCCce------EEEEECCCCCEEEEEecC-------------------------------
Confidence 5662 222 1122222 1222223 799999999999887543
Q ss_pred ecCCCccCCCccCceEEEEEccCCc----eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCC
Q 003363 260 EEDWGETYAGKRQPSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 335 (826)
Q Consensus 260 ~~d~g~~~~~~~~~~l~v~d~~~g~----~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~ 335 (826)
..|.+||+.+++ .+.+. .+....+..++|+|||+. |+..+ .+.
T Consensus 122 -------------~~i~iwd~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~----l~~~~---------------~d~ 168 (377)
T 3dwl_C 122 -------------RVISVCYFEQENDWWVSKHLK-RPLRSTILSLDWHPNNVL----LAAGC---------------ADR 168 (377)
T ss_dssp -------------SCEEECCC-----CCCCEEEC-SSCCSCEEEEEECTTSSE----EEEEE---------------SSS
T ss_pred -------------CeEEEEEECCcccceeeeEee-cccCCCeEEEEEcCCCCE----EEEEe---------------CCC
Confidence 458888888776 45552 124557789999999997 77766 223
Q ss_pred ceEEEEcccccchh-hhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 336 ALYAVRVSLYKSEA-SELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 336 ~l~~~d~~~~~~~~-~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
.|+++|+....... ............++ ...+ .+...+....|||||++|+..+.+ ..|.+||+.+
T Consensus 169 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d-----------~~i~iwd~~~ 236 (377)
T 3dwl_C 169 KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHD-----------SSVTIAYPSA 236 (377)
T ss_dssp CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETT-----------TEEC-CEECS
T ss_pred EEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCC-----------CcEEEEECCC
Confidence 57777762110000 00000000000122 2233 556668889999999999877754 3588899887
Q ss_pred CCC
Q 003363 414 NGN 416 (826)
Q Consensus 414 ~~~ 416 (826)
+..
T Consensus 237 ~~~ 239 (377)
T 3dwl_C 237 PEQ 239 (377)
T ss_dssp TTS
T ss_pred CCC
Confidence 654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.3e-10 Score=122.85 Aligned_cols=263 Identities=13% Similarity=0.111 Sum_probs=157.9
Q ss_pred cceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCcc
Q 003363 124 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVH 201 (826)
Q Consensus 124 ~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~ 201 (826)
.....+.++++.+. +...+.... ....+...+|||||++|+.....+ .+.+|+ .++..+... ...
T Consensus 110 ~~d~~v~lw~~~~~--~~~~~~~~~---~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~---~~~ 176 (401)
T 4aez_A 110 ALERNVYVWNADSG--SVSALAETD---ESTYVASVKWSHDGSFLSVGLGNG-----LVDIYDVESQTKLRTMA---GHQ 176 (401)
T ss_dssp EETTEEEEEETTTC--CEEEEEECC---TTCCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEEEC---CCS
T ss_pred ECCCeEEEeeCCCC--cEeEeeecC---CCCCEEEEEECCCCCEEEEECCCC-----eEEEEECcCCeEEEEec---CCC
Confidence 34456777776332 322222221 114588999999999999876543 456663 333333322 222
Q ss_pred ccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEcc
Q 003363 202 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 281 (826)
Q Consensus 202 g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 281 (826)
+.| ..++| +++.|+..+. ...|.+||+.
T Consensus 177 ~~v------~~~~~--~~~~l~~~~~--------------------------------------------dg~i~i~d~~ 204 (401)
T 4aez_A 177 ARV------GCLSW--NRHVLSSGSR--------------------------------------------SGAIHHHDVR 204 (401)
T ss_dssp SCE------EEEEE--ETTEEEEEET--------------------------------------------TSEEEEEETT
T ss_pred Cce------EEEEE--CCCEEEEEcC--------------------------------------------CCCEEEEecc
Confidence 222 67888 5566666533 3578999987
Q ss_pred C-Cc-eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCC
Q 003363 282 S-GE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSS 359 (826)
Q Consensus 282 ~-g~-~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 359 (826)
. +. +..+ ......+..++|+|||+. |+..+ .+..|+++|+
T Consensus 205 ~~~~~~~~~--~~~~~~v~~~~~~~~~~~----l~s~~---------------~d~~v~iwd~----------------- 246 (401)
T 4aez_A 205 IANHQIGTL--QGHSSEVCGLAWRSDGLQ----LASGG---------------NDNVVQIWDA----------------- 246 (401)
T ss_dssp SSSCEEEEE--ECCSSCEEEEEECTTSSE----EEEEE---------------TTSCEEEEET-----------------
T ss_pred cCcceeeEE--cCCCCCeeEEEEcCCCCE----EEEEe---------------CCCeEEEccC-----------------
Confidence 4 33 3334 334456788999999997 77665 3347889998
Q ss_pred CCCc-ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCC
Q 003363 360 EDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCF 438 (826)
Q Consensus 360 ~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f 438 (826)
.++. ...+..+...+....|+|+|+.++...... ....|++||+.++...... ..
T Consensus 247 ~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs--------~d~~i~i~d~~~~~~~~~~----------~~------ 302 (401)
T 4aez_A 247 RSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGT--------MDKQIHFWNAATGARVNTV----------DA------ 302 (401)
T ss_dssp TCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCT--------TTCEEEEEETTTCCEEEEE----------EC------
T ss_pred CCCCccEEecCCcceEEEEEECCCCCCEEEEecCC--------CCCEEEEEECCCCCEEEEE----------eC------
Confidence 4443 445666777788999999998887765311 1256999998876542111 00
Q ss_pred cccccCCCCCCccccCCCEEEEEEE-eCCeEEEEEEECCCCcEEEe---cCCCCCeeeEEEeecCCEEEEEEeCCCCCCe
Q 003363 439 PGLYSSSILSNPWLSDGCTMLLSSI-WGSSQVIISVNVSSGELLRI---TPAESNFSWSLLTLDGDNIIAVSSSPVDVPQ 514 (826)
Q Consensus 439 ~g~~~~~~~~~~ws~Dg~~l~~~~~-~~~~~~l~~vdl~tg~~~~l---t~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~ 514 (826)
...+..+.|+|||+.|+.++. .++. |..+|+.+++...+ ......+....|++++..++....+ ..
T Consensus 303 ----~~~v~~~~~s~~~~~l~~~~g~~dg~--i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~d----g~ 372 (401)
T 4aez_A 303 ----GSQVTSLIWSPHSKEIMSTHGFPDNN--LSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASD----EN 372 (401)
T ss_dssp ----SSCEEEEEECSSSSEEEEEECTTTCE--EEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTT----SE
T ss_pred ----CCcEEEEEECCCCCeEEEEeecCCCc--EEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCC----Cc
Confidence 012446789999997765532 3344 44555556655543 3333445566889998866554332 24
Q ss_pred EEEEeeccc
Q 003363 515 VKYGYFVDK 523 (826)
Q Consensus 515 l~~~~~~~~ 523 (826)
|.+.++.++
T Consensus 373 i~iw~~~~~ 381 (401)
T 4aez_A 373 LKFWRVYDG 381 (401)
T ss_dssp EEEEECCC-
T ss_pred EEEEECCCC
Confidence 666665443
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.25 E-value=5.3e-10 Score=119.96 Aligned_cols=273 Identities=11% Similarity=0.025 Sum_probs=158.5
Q ss_pred ccEEEEe-----CC-CCCeEEEEecCCCCCCeEEEEec--CCc----eeEEEecCCCccccccCCCcccceeecCCCCeE
Q 003363 155 GASAVVP-----SP-SGSKLLVVRNPENESPIQFELWS--QSQ----LEKEFHVPQTVHGSVYADGWFEGISWNSDETLI 222 (826)
Q Consensus 155 ~~~~~~~-----SP-dG~~la~~~~~~~~~~~~~~i~~--~~~----~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~i 222 (826)
.+...+| +| ||+.|+..+.++ .+.+|+ .++ .......-.+..+.| ..++|+||++.|
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~-----~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V------~~~~~~~~~~~l 91 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSRDK-----TVMIWKLYEEEQNGYFGIPHKALTGHNHFV------SDLALSQENCFA 91 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEETTS-----CEEEEEECSSCCSSBSEEEEEEECCCSSCE------EEEEECSSTTEE
T ss_pred hhhheeeEEEeecCCCCCEEEEEcCCC-----EEEEEECCcCCcccccccccchhccCCCce------EEEEECCCCCEE
Confidence 4777788 77 999998766543 355552 111 111111112232333 789999999999
Q ss_pred EEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCC-CCCCccceEE
Q 003363 223 AYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI-PKSLSVGQVV 301 (826)
Q Consensus 223 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~-~~~~~~~~~~ 301 (826)
+..+.+...+ .|+............+........|.++....+++.....|.+||+.+......... .....+..+.
T Consensus 92 ~s~s~D~~v~--lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~ 169 (343)
T 2xzm_R 92 ISSSWDKTLR--LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVR 169 (343)
T ss_dssp EEEETTSEEE--EEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEE
T ss_pred EEEcCCCcEE--EEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeee
Confidence 9888776544 333222222223334555666778898865566666788999999986544443111 2233567889
Q ss_pred EeeCCCCCc------cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCcccc
Q 003363 302 WAPLNEGLH------QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 375 (826)
Q Consensus 302 wSPDg~~~~------~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~ 375 (826)
|+|+++... ++|+..+ .+..|.++|. .......+..+...+.
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~---------------~d~~i~iwd~-----------------~~~~~~~~~~h~~~v~ 217 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVG---------------WDGRLKVWNT-----------------NFQIRYTFKAHESNVN 217 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEE---------------TTSEEEEEET-----------------TTEEEEEEECCSSCEE
T ss_pred eccccccccccCCCCCEEEEEc---------------CCCEEEEEcC-----------------CCceeEEEcCccccce
Confidence 999984200 0144333 2346778885 4444455666677788
Q ss_pred CceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCC
Q 003363 376 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 455 (826)
Q Consensus 376 ~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg 455 (826)
...|||||++|+..+.+ ..|.+||+............ ...+..++|+||+
T Consensus 218 ~~~~s~~g~~l~sgs~d-----------g~v~iwd~~~~~~~~~~~~~-------------------~~~v~~v~~sp~~ 267 (343)
T 2xzm_R 218 HLSISPNGKYIATGGKD-----------KKLLIWDILNLTYPQREFDA-------------------GSTINQIAFNPKL 267 (343)
T ss_dssp EEEECTTSSEEEEEETT-----------CEEEEEESSCCSSCSEEEEC-------------------SSCEEEEEECSSS
T ss_pred EEEECCCCCEEEEEcCC-----------CeEEEEECCCCcccceeecC-------------------CCcEEEEEECCCC
Confidence 89999999998876654 45889998443221110000 0123467899999
Q ss_pred CEEEEEEEeCCeEEEEEEECCCCcEE---EecC-----------CCCCeeeEEEeecCCEEEEEE
Q 003363 456 CTMLLSSIWGSSQVIISVNVSSGELL---RITP-----------AESNFSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 456 ~~l~~~~~~~~~~~l~~vdl~tg~~~---~lt~-----------~~~~~~~~~~s~dg~~l~~~~ 506 (826)
+.+. .+ .++. +..+|+.+++.. .+.. ....+....|+++|+.|+...
T Consensus 268 ~~la-~~-~d~~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~ 328 (343)
T 2xzm_R 268 QWVA-VG-TDQG--VKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGF 328 (343)
T ss_dssp CEEE-EE-ESSC--EEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE
T ss_pred CEEE-EE-CCCC--EEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEec
Confidence 8553 32 3333 555576665432 2221 112344567888888665543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=7.2e-10 Score=126.53 Aligned_cols=303 Identities=8% Similarity=-0.025 Sum_probs=167.3
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCc-cceeecCCcceecccEEEEeCC----CCCeEEEEecCCCCC
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENS-VTFQWAPFPVEMTGASAVVPSP----SGSKLLVVRNPENES 178 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~-~~lt~~~~~~~~~~~~~~~~SP----dG~~la~~~~~~~~~ 178 (826)
.||||++++.. +. ...+.++++.....+. ..+.. + ......++|| ||++|+......
T Consensus 186 ~spdg~~l~v~-~~--------d~~V~v~D~~~~t~~~~~~i~~-g-----~~p~~va~sp~~~~dg~~l~v~~~~~--- 247 (543)
T 1nir_A 186 MSASGRYLLVI-GR--------DARIDMIDLWAKEPTKVAEIKI-G-----IEARSVESSKFKGYEDRYTIAGAYWP--- 247 (543)
T ss_dssp ECTTSCEEEEE-ET--------TSEEEEEETTSSSCEEEEEEEC-C-----SEEEEEEECCSTTCTTTEEEEEEEES---
T ss_pred ECCCCCEEEEE-CC--------CCeEEEEECcCCCCcEEEEEec-C-----CCcceEEeCCCcCCCCCEEEEEEccC---
Confidence 58999887543 22 1356666652122221 22221 1 3467889999 999987765322
Q ss_pred CeEEEEe-cCCceeEEEecCCC-ccccccCC-CcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCC
Q 003363 179 PIQFELW-SQSQLEKEFHVPQT-VHGSVYAD-GWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 255 (826)
Q Consensus 179 ~~~~~i~-~~~~~~~~~~~~~~-~~g~v~~~-~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (826)
.++.+++ ..++..+.+..... ..+..|.. .....+.+|||++.+++...
T Consensus 248 ~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~---------------------------- 299 (543)
T 1nir_A 248 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK---------------------------- 299 (543)
T ss_dssp SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET----------------------------
T ss_pred CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC----------------------------
Confidence 2343333 34455554443210 00000111 13367899999987766532
Q ss_pred cceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCC
Q 003363 256 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 335 (826)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~ 335 (826)
....|+++|..+++...++.++....+.++.|+|||++ ++..+. ...
T Consensus 300 ---------------~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~----l~va~~--------------~~~ 346 (543)
T 1nir_A 300 ---------------ETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRY----FMTAAN--------------NSN 346 (543)
T ss_dssp ---------------TTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCE----EEEEEG--------------GGT
T ss_pred ---------------CCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCE----EEEEec--------------CCC
Confidence 23689999988765322111222334667899999997 654442 223
Q ss_pred ceEEEEcccccchhhhhhhhcCCCCCCccee-cCCCC--ccccCce-ecCCCCEEEEEeccCCCCCCCCcccceEEEEeC
Q 003363 336 ALYAVRVSLYKSEASELELKESSSEDLPVVN-LTESI--SSAFFPR-FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 411 (826)
Q Consensus 336 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-Lt~~~--~~~~~p~-~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~ 411 (826)
.|.++|+ .++++.. +..+. ....... ++||+..++..... +...|.+||.
T Consensus 347 ~v~v~D~-----------------~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~---------~d~~V~v~d~ 400 (543)
T 1nir_A 347 KVAVIDS-----------------KDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL---------GDGSISLIGT 400 (543)
T ss_dssp EEEEEET-----------------TTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBS---------SSSEEEEEEC
T ss_pred eEEEEEC-----------------CCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccC---------CCceEEEEEe
Confidence 6888998 5665443 32111 1112233 47887765444332 1256888998
Q ss_pred CCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC----CeEEEEEEECCCCcEE--Ee--
Q 003363 412 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG----SSQVIISVNVSSGELL--RI-- 483 (826)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~----~~~~l~~vdl~tg~~~--~l-- 483 (826)
++.+.... ...++..+..+. .....+.++|||++|++.+..+ ....|.++|+++++.. .|
T Consensus 401 ~~~~~~~~---~~~~v~~l~~~g---------~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v 468 (543)
T 1nir_A 401 DPKNHPQY---AWKKVAELQGQG---------GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPI 468 (543)
T ss_dssp CTTTCTTT---BTSEEEEEECSC---------SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECH
T ss_pred CCCCCchh---cCeEEEEEEcCC---------CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeec
Confidence 77332110 011233232221 1234567999999888754211 1447888899887754 32
Q ss_pred ------cCCCCCeeeEEEeecCCEEEEEEeC-CCCCCeEEEEeeccc
Q 003363 484 ------TPAESNFSWSLLTLDGDNIIAVSSS-PVDVPQVKYGYFVDK 523 (826)
Q Consensus 484 ------t~~~~~~~~~~~s~dg~~l~~~~s~-~~~p~~l~~~~~~~~ 523 (826)
...........|+++|+++++..-+ ......|.++|..+.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~ 515 (543)
T 1nir_A 469 AEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL 515 (543)
T ss_dssp HHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred hhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCc
Confidence 1222334566899999999987643 345677888886544
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-09 Score=127.28 Aligned_cols=278 Identities=12% Similarity=0.120 Sum_probs=163.2
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCC---CCccceeecCCcceecc-cEEEEeCC--CCCeEEEEecCCCC
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKEN---ENSVTFQWAPFPVEMTG-ASAVVPSP--SGSKLLVVRNPENE 177 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~---~~~~~lt~~~~~~~~~~-~~~~~~SP--dG~~la~~~~~~~~ 177 (826)
+||||+.+++.. ...+.++++.+.. .....+.... .. +...+||| ||++||.....+
T Consensus 26 ~spdg~~l~~~~----------~~~v~v~~~~~~~~~~~~~~~~~~h~-----~~~v~~~~~sp~~~~~~l~s~~~dg-- 88 (615)
T 1pgu_A 26 YDPTTNAIAYPC----------GKSAFVRCLDDGDSKVPPVVQFTGHG-----SSVVTTVKFSPIKGSQYLCSGDESG-- 88 (615)
T ss_dssp EETTTTEEEEEE----------TTEEEEEECCSSCCSSCSEEEECTTT-----TSCEEEEEECSSTTCCEEEEEETTS--
T ss_pred ECCCCCEEEEec----------CCeEEEEECCCCCCccccceEEecCC-----CceEEEEEECcCCCCCEEEEecCCC--
Confidence 479999998864 1246666664321 2233333333 45 88999999 999999876543
Q ss_pred CCeEEEEec--CC------ceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcc
Q 003363 178 SPIQFELWS--QS------QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKD 249 (826)
Q Consensus 178 ~~~~~~i~~--~~------~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (826)
.+.+|+ .+ +...+..+. ...+. +..+.|||||+.|+..+.+..
T Consensus 89 ---~v~vw~~~~~~~~~~~~~~~~~~~~-~~~~~------v~~~~~s~~~~~l~~~~~~~~------------------- 139 (615)
T 1pgu_A 89 ---KVIVWGWTFDKESNSVEVNVKSEFQ-VLAGP------ISDISWDFEGRRLCVVGEGRD------------------- 139 (615)
T ss_dssp ---EEEEEEEEEEGGGTEEEEEEEEEEE-CCSSC------EEEEEECTTSSEEEEEECCSS-------------------
T ss_pred ---EEEEEeCCCCcccccccccccchhh-ccccc------EEEEEEeCCCCEEEEeccCCC-------------------
Confidence 455552 22 112222211 12222 379999999999998865431
Q ss_pred CCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeee
Q 003363 250 CNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKY 329 (826)
Q Consensus 250 ~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~ 329 (826)
....|++|| .+.....+ ......+..+.|+||++. +++++.
T Consensus 140 ---------------------~~~~v~~~d-~~~~~~~~--~~~~~~v~~~~~~~~~~~----~l~~~~----------- 180 (615)
T 1pgu_A 140 ---------------------NFGVFISWD-SGNSLGEV--SGHSQRINACHLKQSRPM----RSMTVG----------- 180 (615)
T ss_dssp ---------------------CSEEEEETT-TCCEEEEC--CSCSSCEEEEEECSSSSC----EEEEEE-----------
T ss_pred ---------------------CccEEEEEE-CCCcceee--ecCCccEEEEEECCCCCc----EEEEEe-----------
Confidence 235788888 33444455 344456788999999996 655552
Q ss_pred eccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCc---cccCceecCC-CCEEEEEeccCCCCCCCCcccc
Q 003363 330 CYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESIS---SAFFPRFSPD-GKFLVFLSAKSSVDSGAHSATD 404 (826)
Q Consensus 330 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~---~~~~p~~SpD-G~~l~f~s~~~~~~~g~~~~~~ 404 (826)
.+..|.++|+ .+++ ...+..+.. .+....|+|| |++|+..+.+ .
T Consensus 181 ---~d~~v~vwd~-----------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----------g 229 (615)
T 1pgu_A 181 ---DDGSVVFYQG-----------------PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD-----------R 229 (615)
T ss_dssp ---TTTEEEEEET-----------------TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT-----------C
T ss_pred ---CCCcEEEEeC-----------------CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCC-----------C
Confidence 3347888887 4433 445555655 6888999999 9988876654 3
Q ss_pred eEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003363 405 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (826)
Q Consensus 405 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt 484 (826)
.|++||+.+++...... .. .. .....+..+.|+ |++.|+.. ..++ .+..+|+.+++.....
T Consensus 230 ~i~vwd~~~~~~~~~~~---------~~-~~-----~~~~~v~~~~~~-~~~~l~~~-~~d~--~i~~wd~~~~~~~~~~ 290 (615)
T 1pgu_A 230 KISCFDGKSGEFLKYIE---------DD-QE-----PVQGGIFALSWL-DSQKFATV-GADA--TIRVWDVTTSKCVQKW 290 (615)
T ss_dssp CEEEEETTTCCEEEECC---------BT-TB-----CCCSCEEEEEES-SSSEEEEE-ETTS--EEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCCEeEEec---------cc-cc-----ccCCceEEEEEc-CCCEEEEE-cCCC--cEEEEECCCCcEEEEE
Confidence 58999988765422110 00 00 011134467899 88866544 3333 4666688877765443
Q ss_pred CCC-----CCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 003363 485 PAE-----SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 485 ~~~-----~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 521 (826)
... .......+ ++++.++....+ ..+.+.++.
T Consensus 291 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~----g~i~~~d~~ 327 (615)
T 1pgu_A 291 TLDKQQLGNQQVGVVA-TGNGRIISLSLD----GTLNFYELG 327 (615)
T ss_dssp ECCTTCGGGCEEEEEE-EETTEEEEEETT----SCEEEEETT
T ss_pred cCCCCcccCceeEEEe-CCCCeEEEEECC----CCEEEEECC
Confidence 322 12222233 366666554432 235555543
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.24 E-value=8.4e-11 Score=123.94 Aligned_cols=235 Identities=9% Similarity=0.004 Sum_probs=145.0
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (826)
++|||+.++-.. ....+.++++.+. .....+.... ..+....|+|||++|+..+..+ .+.
T Consensus 21 fsp~~~~l~s~~---------~dg~v~lWd~~~~-~~~~~~~~~~-----~~v~~~~~~~~~~~l~s~s~d~-----~i~ 80 (304)
T 2ynn_A 21 FHPTEPWVLTTL---------YSGRVELWNYETQ-VEVRSIQVTE-----TPVRAGKFIARKNWIIVGSDDF-----RIR 80 (304)
T ss_dssp ECSSSSEEEEEE---------TTSEEEEEETTTT-EEEEEEECCS-----SCEEEEEEEGGGTEEEEEETTS-----EEE
T ss_pred ECCCCCEEEEEc---------CCCcEEEEECCCC-ceeEEeeccC-----CcEEEEEEeCCCCEEEEECCCC-----EEE
Confidence 388998776432 2345666665322 2223333232 3478899999999999876544 567
Q ss_pred Eec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeec
Q 003363 184 LWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 261 (826)
Q Consensus 184 i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (826)
+|+ .++....+. +..+.| ..++|+||++.|+..+.+...+.+.+... .........+........|.|
T Consensus 81 vwd~~~~~~~~~~~---~h~~~v------~~~~~~~~~~~l~sgs~D~~v~lWd~~~~-~~~~~~~~~h~~~v~~v~~~p 150 (304)
T 2ynn_A 81 VFNYNTGEKVVDFE---AHPDYI------RSIAVHPTKPYVLSGSDDLTVKLWNWENN-WALEQTFEGHEHFVMCVAFNP 150 (304)
T ss_dssp EEETTTCCEEEEEE---CCSSCE------EEEEECSSSSEEEEEETTSCEEEEEGGGT-TEEEEEECCCCSCEEEEEECT
T ss_pred EEECCCCcEEEEEe---CCCCcE------EEEEEcCCCCEEEEECCCCeEEEEECCCC-cchhhhhcccCCcEEEEEECC
Confidence 773 333333222 222223 79999999999998888776543322211 011112234455556677887
Q ss_pred CCCc-cCCCccCceEEEEEccCCceE-eccCCCCCCccceEEEee--CCCCCccEEEEEeecCcceeeeeeeeccCCCce
Q 003363 262 DWGE-TYAGKRQPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAP--LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCAL 337 (826)
Q Consensus 262 d~g~-~~~~~~~~~l~v~d~~~g~~~-~l~~~~~~~~~~~~~wSP--Dg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l 337 (826)
+-+. .+++..+..|.+||+.+++.. .+. ......+..+.|+| |++. |+..+ .+..|
T Consensus 151 ~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~----l~s~s---------------~D~~i 210 (304)
T 2ynn_A 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPY----MITAS---------------DDLTI 210 (304)
T ss_dssp TCTTEEEEEETTSEEEEEETTCSSCSEEEE-CCCTTCEEEEEECCSTTCCE----EEEEE---------------TTSEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCccceec-cCCcCcEEEEEEEEcCCCCE----EEEEc---------------CCCeE
Confidence 4333 455666789999999766533 221 22233556778887 5554 55544 33478
Q ss_pred EEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 338 YAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 338 ~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
.++|+ .+++ ...+..+...+....|+||++.|+..+.+ ..|.+||..+++.
T Consensus 211 ~iWd~-----------------~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~D-----------g~i~iWd~~~~~~ 262 (304)
T 2ynn_A 211 KIWDY-----------------QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED-----------GTLKIWNSSTYKV 262 (304)
T ss_dssp EEEET-----------------TTTEEEEEEECCSSCEEEEEECSSSSEEEEEETT-----------SCEEEEETTTCCE
T ss_pred EEEeC-----------------CCCccceeeCCCCCCEEEEEECCCCCEEEEEcCC-----------CeEEEEECCCCce
Confidence 89998 4443 45667777778889999999988866654 3589999877553
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.4e-10 Score=134.07 Aligned_cols=226 Identities=12% Similarity=0.089 Sum_probs=139.2
Q ss_pred ccceeEEEEEEeecCCCC----ccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEec
Q 003363 123 NKRKKFMLSTVISKENEN----SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHV 196 (826)
Q Consensus 123 ~~~~~~l~~~~i~~~~~~----~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~ 196 (826)
.+.++.+.++++...... ...++.+. ..+...+|||||++|+..+..+ .+.+|+ .+...+.+.
T Consensus 401 ~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~-----~~v~~v~~s~~g~~l~sgs~Dg-----~v~vwd~~~~~~~~~~~- 469 (694)
T 3dm0_A 401 ASRDKSIILWKLTKDDKAYGVAQRRLTGHS-----HFVEDVVLSSDGQFALSGSWDG-----ELRLWDLAAGVSTRRFV- 469 (694)
T ss_dssp EETTSEEEEEECCCSTTCSCEEEEEEECCS-----SCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEE-
T ss_pred EeCCCcEEEEEccCCCcccccccceecCCC-----CcEEEEEECCCCCEEEEEeCCC-----cEEEEECCCCcceeEEe-
Confidence 344567777777543221 12333333 4588999999999998876543 577783 333333222
Q ss_pred CCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCC-CCCCCCccCCCCCCcceeecCCC--ccCCCccCc
Q 003363 197 PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST-KGGSSDKDCNSWKGQGDWEEDWG--ETYAGKRQP 273 (826)
Q Consensus 197 ~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~g--~~~~~~~~~ 273 (826)
+..+.| ..++|||||+.|+..+.+...+.+....... ........+..+.....|.++.. ..+++..+.
T Consensus 470 --~h~~~v------~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~ 541 (694)
T 3dm0_A 470 --GHTKDV------LSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDK 541 (694)
T ss_dssp --CCSSCE------EEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTS
T ss_pred --CCCCCE------EEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCC
Confidence 222333 7899999999999988877554322110000 00111123455556667777642 234555678
Q ss_pred eEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhh
Q 003363 274 SLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 353 (826)
Q Consensus 274 ~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~ 353 (826)
.|.+||+.+++..... ......+..++|+|||+. |+..+ .+..|.++|+
T Consensus 542 ~v~vwd~~~~~~~~~~-~~h~~~v~~v~~spdg~~----l~sg~---------------~Dg~i~iwd~----------- 590 (694)
T 3dm0_A 542 TVKVWNLSNCKLRSTL-AGHTGYVSTVAVSPDGSL----CASGG---------------KDGVVLLWDL----------- 590 (694)
T ss_dssp CEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTSBCEEEET-----------
T ss_pred eEEEEECCCCcEEEEE-cCCCCCEEEEEEeCCCCE----EEEEe---------------CCCeEEEEEC-----------
Confidence 8999999988765431 334456788999999997 77665 3347888898
Q ss_pred hhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 354 LKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 354 ~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
.+++..........+....|||||..|+..+ + ..|.+||+.++..
T Consensus 591 ------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~-----------~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 591 ------AEGKKLYSLEANSVIHALCFSPNRYWLCAAT-E-----------HGIKIWDLESKSI 635 (694)
T ss_dssp ------TTTEEEECCBCSSCEEEEEECSSSSEEEEEE-T-----------TEEEEEETTTTEE
T ss_pred ------CCCceEEEecCCCcEEEEEEcCCCcEEEEEc-C-----------CCEEEEECCCCCC
Confidence 4444333233344577889999998776433 2 2489999887553
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.23 E-value=8.9e-10 Score=123.07 Aligned_cols=175 Identities=13% Similarity=0.071 Sum_probs=108.7
Q ss_pred ceEEEEEcc--CCceEec-cCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchh
Q 003363 273 PSLFVININ--SGEVQAV-KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 349 (826)
Q Consensus 273 ~~l~v~d~~--~g~~~~l-~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 349 (826)
..|.+||+. +++.... ........+..++|+|||+. |+..+ ....++.+++
T Consensus 125 g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~----l~~~~---------------~~g~v~~~~~------- 178 (450)
T 2vdu_B 125 KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT----VIIAD---------------KFGDVYSIDI------- 178 (450)
T ss_dssp TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE----EEEEE---------------TTSEEEEEET-------
T ss_pred CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE----EEEEe---------------CCCcEEEEec-------
Confidence 578899988 6654433 11122345778999999997 77665 2347899997
Q ss_pred hhhhhhcCCCCCCcce-----ecCCCCccccCceecCC---CCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCc-c
Q 003363 350 SELELKESSSEDLPVV-----NLTESISSAFFPRFSPD---GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS-L 420 (826)
Q Consensus 350 ~~~~~~~~~~~~~~~~-----~Lt~~~~~~~~p~~SpD---G~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~-~ 420 (826)
.++... .+..+...+....|+|| |++|+..+.+ ..|++||+.++..... .
T Consensus 179 ----------~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d-----------~~i~vwd~~~~~~~~~~~ 237 (450)
T 2vdu_B 179 ----------NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD-----------EHIKISHYPQCFIVDKWL 237 (450)
T ss_dssp ----------TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT-----------SCEEEEEESCTTCEEEEC
T ss_pred ----------CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC-----------CcEEEEECCCCceeeeee
Confidence 333222 45556667888999999 8888766643 3588999877553211 1
Q ss_pred cceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC--------------
Q 003363 421 EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-------------- 486 (826)
Q Consensus 421 ~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~-------------- 486 (826)
.+ +...+..++|+ ||+.|+.. . .+..|..+|+.+++.......
T Consensus 238 ~~-------------------h~~~v~~~~~s-d~~~l~s~-~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (450)
T 2vdu_B 238 FG-------------------HKHFVSSICCG-KDYLLLSA-G--GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLA 294 (450)
T ss_dssp CC-------------------CSSCEEEEEEC-STTEEEEE-E--SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC
T ss_pred cC-------------------CCCceEEEEEC-CCCEEEEE-e--CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccc
Confidence 00 11134467899 99876544 3 334677778888875543321
Q ss_pred ------------CCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEee
Q 003363 487 ------------ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 520 (826)
Q Consensus 487 ------------~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 520 (826)
...+....++++++.+++..... ..|.+.++
T Consensus 295 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d---~~i~iw~~ 337 (450)
T 2vdu_B 295 PPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT---KCIIILEM 337 (450)
T ss_dssp ----------CBCCCEEEEEECSSSSEEEEEETTC---SEEEEEEE
T ss_pred cccccccccccceEEEEEEEEeCCCCEEEEEECCC---CeEEEEEe
Confidence 11344556778888766665332 34666666
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.23 E-value=5.7e-10 Score=122.55 Aligned_cols=229 Identities=12% Similarity=0.064 Sum_probs=139.2
Q ss_pred cccEEEEeCC-CCCeEEEEecCCCCCCeEEEEec--CC-------ceeEEEecCCCccccccCCCcccceeecCCCCeEE
Q 003363 154 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWS--QS-------QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIA 223 (826)
Q Consensus 154 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~i~~--~~-------~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia 223 (826)
..+...+|+| +|+.|+.....+ .+.+|+ .+ +...... +..+.| ..+.|+|||+.++
T Consensus 82 ~~V~~~~~~p~~~~~l~s~s~dg-----~v~vw~~~~~~~~~~~~~~~~~~~---~h~~~v------~~~~~~p~~~~~l 147 (402)
T 2aq5_A 82 APVLDIAWCPHNDNVIASGSEDC-----TVMVWEIPDGGLVLPLREPVITLE---GHTKRV------GIVAWHPTAQNVL 147 (402)
T ss_dssp SCEEEEEECTTCTTEEEEEETTS-----EEEEEECCTTCCSSCBCSCSEEEE---CCSSCE------EEEEECSSBTTEE
T ss_pred CCEEEEEeCCCCCCEEEEEeCCC-----eEEEEEccCCCCccccCCceEEec---CCCCeE------EEEEECcCCCCEE
Confidence 4689999999 888888776543 455662 22 1122222 122222 7899999995444
Q ss_pred EEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC-CCCCCccceEEE
Q 003363 224 YVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVW 302 (826)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~-~~~~~~~~~~~w 302 (826)
+++.. +..|.+||+.+++...... ......+..++|
T Consensus 148 ~s~~~-------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 184 (402)
T 2aq5_A 148 LSAGC-------------------------------------------DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDW 184 (402)
T ss_dssp EEEET-------------------------------------------TSCEEEEETTTTEEEEEECTTTCCSCEEEEEE
T ss_pred EEEcC-------------------------------------------CCEEEEEECCCCCccEEEecCCCCCceEEEEE
Confidence 44321 2569999999887654410 123446788999
Q ss_pred eeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc-eec-CCCCcc-ccCcee
Q 003363 303 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNL-TESISS-AFFPRF 379 (826)
Q Consensus 303 SPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~L-t~~~~~-~~~p~~ 379 (826)
+|||+. |+..+ .+..|+++|+ .+++. ..+ ..+.+. .....|
T Consensus 185 ~~~~~~----l~~~~---------------~d~~i~iwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~ 228 (402)
T 2aq5_A 185 SRDGAL----ICTSC---------------RDKRVRVIEP-----------------RKGTVVAEKDRPHEGTRPVHAVF 228 (402)
T ss_dssp CTTSSC----EEEEE---------------TTSEEEEEET-----------------TTTEEEEEEECSSCSSSCCEEEE
T ss_pred CCCCCE----EEEEe---------------cCCcEEEEeC-----------------CCCceeeeeccCCCCCcceEEEE
Confidence 999998 88776 3347899998 44443 344 344333 677899
Q ss_pred cCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEE
Q 003363 380 SPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 459 (826)
Q Consensus 380 SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~ 459 (826)
+|||+.|+...... ....|.+||+.++....... ..+ ....+..+.|+|||+.|+
T Consensus 229 ~~~~~~l~~g~~~~--------~d~~i~iwd~~~~~~~~~~~---------~~~--------~~~~v~~~~~s~~~~~l~ 283 (402)
T 2aq5_A 229 VSEGKILTTGFSRM--------SERQVALWDTKHLEEPLSLQ---------ELD--------TSSGVLLPFFDPDTNIVY 283 (402)
T ss_dssp CSTTEEEEEEECTT--------CCEEEEEEETTBCSSCSEEE---------ECC--------CCSSCEEEEEETTTTEEE
T ss_pred cCCCcEEEEeccCC--------CCceEEEEcCccccCCceEE---------ecc--------CCCceeEEEEcCCCCEEE
Confidence 99999777653221 23579999987755311100 000 011345678999999887
Q ss_pred EEEEeCCeEEEEEEECCCCc--EEEecCC--CCCeeeEEEeecCCEE
Q 003363 460 LSSIWGSSQVIISVNVSSGE--LLRITPA--ESNFSWSLLTLDGDNI 502 (826)
Q Consensus 460 ~~~~~~~~~~l~~vdl~tg~--~~~lt~~--~~~~~~~~~s~dg~~l 502 (826)
++...++...+ +|+.+++ ...+... ...+....|++++..+
T Consensus 284 ~~g~~dg~i~i--~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~ 328 (402)
T 2aq5_A 284 LCGKGDSSIRY--FEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLE 328 (402)
T ss_dssp EEETTCSCEEE--EEECSSTTCEEEEEEECCSSCCSEEEECCGGGSC
T ss_pred EEEcCCCeEEE--EEecCCCcceEeecccccCCcccceEEecccccc
Confidence 66544454444 4555666 5555432 2344556788887654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=8e-10 Score=140.01 Aligned_cols=239 Identities=10% Similarity=0.084 Sum_probs=133.9
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003363 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (826)
Q Consensus 102 ~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (826)
-.+||||+.++... ....+.++++.+. .....+.... ..+...+|||||++||.....+ .
T Consensus 621 ~~~s~~~~~l~s~~---------~d~~i~vw~~~~~-~~~~~~~~h~-----~~v~~~~~s~~~~~l~s~~~d~-----~ 680 (1249)
T 3sfz_A 621 ACFSQDGQRIASCG---------ADKTLQVFKAETG-EKLLDIKAHE-----DEVLCCAFSSDDSYIATCSADK-----K 680 (1249)
T ss_dssp EEECTTSSEEEEEE---------TTSCEEEEETTTC-CEEEEECCCS-----SCEEEEEECTTSSEEEEEETTS-----E
T ss_pred EEECCCCCEEEEEe---------CCCeEEEEECCCC-CEEEEeccCC-----CCEEEEEEecCCCEEEEEeCCC-----e
Confidence 34588998876532 2345666665322 2223333222 4688999999999999876543 5
Q ss_pred EEEec--CCceeEEEecCCCccccccCCCcccceeecCCCC--eEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcc
Q 003363 182 FELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDET--LIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 257 (826)
Q Consensus 182 ~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~--~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (826)
+.+|+ .++...... +..+.| ..+.|+|+++ .++..+.+.... .|+............+.......
T Consensus 681 v~vwd~~~~~~~~~~~---~~~~~v------~~~~~~~~~~~~~l~sg~~d~~v~--vwd~~~~~~~~~~~~h~~~v~~~ 749 (1249)
T 3sfz_A 681 VKIWDSATGKLVHTYD---EHSEQV------NCCHFTNKSNHLLLATGSNDFFLK--LWDLNQKECRNTMFGHTNSVNHC 749 (1249)
T ss_dssp EEEEETTTCCEEEEEE---CCSSCE------EEEEECSSSSCCEEEEEETTSCEE--EEETTSSSEEEEECCCSSCEEEE
T ss_pred EEEEECCCCceEEEEc---CCCCcE------EEEEEecCCCceEEEEEeCCCeEE--EEECCCcchhheecCCCCCEEEE
Confidence 67773 344333332 222222 7899999655 444444444322 33332222222233445555667
Q ss_pred eeecCCCccCCCccCceEEEEEccCCceEeccCC------------CCCCccceEEEeeCCCCCccEEEEEeecCcceee
Q 003363 258 DWEEDWGETYAGKRQPSLFVININSGEVQAVKGI------------PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL 325 (826)
Q Consensus 258 ~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~------------~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~ 325 (826)
.|.++....+++.....|.+||+.+++....... .....+..++|+|||+. |+..+. .....+
T Consensus 750 ~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~----l~~~~~-~~v~~~ 824 (1249)
T 3sfz_A 750 RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK----IIVAAK-NKVLLF 824 (1249)
T ss_dssp EECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSE----EEEEET-TEEEEE
T ss_pred EEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCE----EEEEcC-CcEEEE
Confidence 7888855556666678899999987754322100 01123456678888876 665542 110000
Q ss_pred e--------------------e--------eeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCc
Q 003363 326 G--------------------I--------KYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFP 377 (826)
Q Consensus 326 g--------------------~--------~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p 377 (826)
. . ......+..|..+|+. .......+..+...+...
T Consensus 825 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~----------------~~~~~~~~~~h~~~v~~v 888 (1249)
T 3sfz_A 825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID----------------SRLKVADCRGHLSWVHGV 888 (1249)
T ss_dssp ETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETT----------------TTEEEEEECCCSSCEEEE
T ss_pred EecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC----------------CCceeeecCCCccceEEE
Confidence 0 0 0011123456677762 223345566677778899
Q ss_pred eecCCCCEEEEEecc
Q 003363 378 RFSPDGKFLVFLSAK 392 (826)
Q Consensus 378 ~~SpDG~~l~f~s~~ 392 (826)
.|||||+.|+..+.+
T Consensus 889 ~~spdg~~l~s~s~d 903 (1249)
T 3sfz_A 889 MFSPDGSSFLTASDD 903 (1249)
T ss_dssp EECTTSSEEEEEETT
T ss_pred EECCCCCEEEEEeCC
Confidence 999999998877755
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-08 Score=108.46 Aligned_cols=259 Identities=10% Similarity=0.008 Sum_probs=143.0
Q ss_pred EEEeCCCCCeEEEEecC------CCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCC
Q 003363 158 AVVPSPSGSKLLVVRNP------ENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (826)
Q Consensus 158 ~~~~SPdG~~la~~~~~------~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~ 230 (826)
.+++||||++|++.... +.....+..++ ...+....+.+..... .-....-..+.|||||++|++.....
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~--~~~g~~p~~~~~spDG~~l~v~n~~~- 146 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR--FDVGPYSWMNANTPNNADLLFFQFAA- 146 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc--cccCCCccceEECCCCCEEEEEecCC-
Confidence 88999999999876531 11123355555 3444444444431000 00000115789999999998864321
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEec-cCCCCCCccceEEEeeCCCCC
Q 003363 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNEGL 309 (826)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l-~~~~~~~~~~~~~wSPDg~~~ 309 (826)
...|.++| +++++... ...+ +.+.+.|+|+.
T Consensus 147 -----------------------------------------~~~v~viD-~t~~~~~~~i~~~-----~~~~~~~~~~~- 178 (373)
T 2mad_H 147 -----------------------------------------GPAVGLVV-QGGSSDDQLLSSP-----TCYHIHPGAPS- 178 (373)
T ss_pred -----------------------------------------CCeEEEEE-CCCCEEeEEcCCC-----ceEEEEeCCCc-
Confidence 25799999 99886532 2122 12566788876
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceec------CCCCccccCceecCCC
Q 003363 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL------TESISSAFFPRFSPDG 383 (826)
Q Consensus 310 ~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L------t~~~~~~~~p~~SpDG 383 (826)
.++..+ .+..+..+|. . +...... .........|.+++|+
T Consensus 179 ---~~~~~~--------------~dg~~~~vd~-~----------------g~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 224 (373)
T 2mad_H 179 ---TFYLLC--------------AQGGLAKTDH-A----------------GGAAGAGLVGAMLTAAQNLLTQPAQANKS 224 (373)
T ss_pred ---eEEEEc--------------CCCCEEEEEC-C----------------CcEEEEEeccccccCCcceeecceeEecC
Confidence 655432 1224556664 1 1111011 1111122457889999
Q ss_pred CEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCC-CCcccccCCCCCCccccCCCEEEEEE
Q 003363 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD-CFPGLYSSSILSNPWLSDGCTMLLSS 462 (826)
Q Consensus 384 ~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~f~g~~~~~~~~~~ws~Dg~~l~~~~ 462 (826)
..++|.+.. .+++++|+.++....+. .+...... ...+....+...+.+++||+++|+..
T Consensus 225 ~~~~~~~~~-----------~~v~vid~~~~~~~v~~--------~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~ 285 (373)
T 2mad_H 225 GRIVWPVYS-----------GKILQADISAAGATNKA--------PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLT 285 (373)
T ss_pred CEEEEEcCC-----------ceEEEEeccCCcceEee--------eeeecCCcccccceecCceEeEEECCCCCEEEEEe
Confidence 998888732 36999998765432111 01000000 00000000112356899999998876
Q ss_pred EeC-------CeEEEEEEECCCCcE-EEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 463 IWG-------SSQVIISVNVSSGEL-LRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 463 ~~~-------~~~~l~~vdl~tg~~-~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
... ....|+.+|++++++ .+|..+. ......+++||+.++++..... ..|.++|..+.
T Consensus 286 ~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~~~--~~V~ViD~~t~ 351 (373)
T 2mad_H 286 SEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAISVAQDGGPDLYALSAGT--EVLHIYDAGAG 351 (373)
T ss_pred ccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEEECCCCCeEEEEEcCCC--CeEEEEECCCC
Confidence 432 235799999999887 5564433 2445689999996666654322 46888887654
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.20 E-value=5.2e-10 Score=122.92 Aligned_cols=201 Identities=14% Similarity=0.168 Sum_probs=130.1
Q ss_pred cceeecC-CCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc-----
Q 003363 211 EGISWNS-DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE----- 284 (826)
Q Consensus 211 ~~~~wSP-Dg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~----- 284 (826)
..++|+| |++.|+..+.+ ..|.+||+.++.
T Consensus 85 ~~~~~~p~~~~~l~s~s~d--------------------------------------------g~v~vw~~~~~~~~~~~ 120 (402)
T 2aq5_A 85 LDIAWCPHNDNVIASGSED--------------------------------------------CTVMVWEIPDGGLVLPL 120 (402)
T ss_dssp EEEEECTTCTTEEEEEETT--------------------------------------------SEEEEEECCTTCCSSCB
T ss_pred EEEEeCCCCCCEEEEEeCC--------------------------------------------CeEEEEEccCCCCcccc
Confidence 8999999 88888776433 568999988763
Q ss_pred ---eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCC
Q 003363 285 ---VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 361 (826)
Q Consensus 285 ---~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 361 (826)
+..+ ......+..++|+|||+. +++++. .+..|+++|+ .+
T Consensus 121 ~~~~~~~--~~h~~~v~~~~~~p~~~~----~l~s~~--------------~dg~i~iwd~-----------------~~ 163 (402)
T 2aq5_A 121 REPVITL--EGHTKRVGIVAWHPTAQN----VLLSAG--------------CDNVILVWDV-----------------GT 163 (402)
T ss_dssp CSCSEEE--ECCSSCEEEEEECSSBTT----EEEEEE--------------TTSCEEEEET-----------------TT
T ss_pred CCceEEe--cCCCCeEEEEEECcCCCC----EEEEEc--------------CCCEEEEEEC-----------------CC
Confidence 2333 233456788999999976 666652 2347889998 44
Q ss_pred Cc-ceec--CCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCC
Q 003363 362 LP-VVNL--TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCF 438 (826)
Q Consensus 362 ~~-~~~L--t~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f 438 (826)
++ ...+ ..+...+....|+|||+.|+..+.+ ..|++||+.++.... . +.....+
T Consensus 164 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~iwd~~~~~~~~---------~-~~~~~~~-- 220 (402)
T 2aq5_A 164 GAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD-----------KRVRVIEPRKGTVVA---------E-KDRPHEG-- 220 (402)
T ss_dssp TEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT-----------SEEEEEETTTTEEEE---------E-EECSSCS--
T ss_pred CCccEEEecCCCCCceEEEEECCCCCEEEEEecC-----------CcEEEEeCCCCceee---------e-eccCCCC--
Confidence 44 4455 5566778899999999998877644 469999987754311 1 1000000
Q ss_pred cccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcE--EEec-CCCCCeeeEEEeecCCEEEEEEeCCCCCCeE
Q 003363 439 PGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL--LRIT-PAESNFSWSLLTLDGDNIIAVSSSPVDVPQV 515 (826)
Q Consensus 439 ~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~--~~lt-~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l 515 (826)
..+..+.|+|||+.|+.......+..|..+|+.+++. .... .....+....|+++++.+++...... .|
T Consensus 221 -----~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg---~i 292 (402)
T 2aq5_A 221 -----TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS---SI 292 (402)
T ss_dssp -----SSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCS---CE
T ss_pred -----CcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCC---eE
Confidence 0134678999998555443334567788889887653 2222 22334566788999998776664333 36
Q ss_pred EEEeeccc
Q 003363 516 KYGYFVDK 523 (826)
Q Consensus 516 ~~~~~~~~ 523 (826)
.+.++...
T Consensus 293 ~i~d~~~~ 300 (402)
T 2aq5_A 293 RYFEITSE 300 (402)
T ss_dssp EEEEECSS
T ss_pred EEEEecCC
Confidence 67776543
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-09 Score=117.29 Aligned_cols=115 Identities=10% Similarity=0.052 Sum_probs=65.0
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
....++|||||+++++.... ...++.++ ..++....+....... ........+.|||||++|++...+.....
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~---~~~i~~~d~~t~~~~~~~~~~~~~~---~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 117 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNH---YGDIYGIDLDTCKNTFHANLSSVPG---EVGRSMYSFAISPDGKEVYATVNPTQRLN 117 (349)
T ss_dssp SSCEEEECTTSSEEEEEETT---TTEEEEEETTTTEEEEEEESCCSTT---EEEECSSCEEECTTSSEEEEEEEEEEECS
T ss_pred CCceeEECCCCCEEEEEeCC---CCcEEEEeCCCCcEEEEEEcccccc---cccccccceEECCCCCEEEEEcccccccc
Confidence 36788999999988766532 23466555 4455555444322100 00001168899999999998765421000
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEec-cCCCCCCccceEEEeeCCC
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNE 307 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l-~~~~~~~~~~~~~wSPDg~ 307 (826)
. .|. .....|++||+++++.... ........+..++|+|||+
T Consensus 118 ~-----------------------~~~---------~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 118 D-----------------------HYV---------VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 160 (349)
T ss_dssp S-----------------------CEE---------ECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred c-----------------------ccc---------cCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc
Confidence 0 000 0236899999988654322 1011222466788999998
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-09 Score=116.27 Aligned_cols=246 Identities=12% Similarity=0.120 Sum_probs=146.6
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCC--CCeEEEEeecC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEP 229 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPD--g~~ia~~~~~~ 229 (826)
..+...+|||||++||.....+ .+.+|+ .+....+..+ .+..+.| ..+.|+|+ ++.|+..+.+
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~-~~h~~~v------~~~~~~~~~~~~~l~s~~~d- 78 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSDK-----TIKIFEVEGETHKLIDTL-TGHEGPV------WRVDWAHPKFGTILASCSYD- 78 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETTS-----CEEEEEEETTEEEEEEEE-CCCSSCE------EEEEECCGGGCSEEEEEETT-
T ss_pred ccEEEEEEcCCCCEEEEEECCC-----cEEEEecCCCcceeeeEe-cCCCCcE------EEEEeCCCCCCCEEEEeccC-
Confidence 4588999999999999876532 355552 1222222222 2222333 78999988 8888876443
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEecc-CCCCCCccceEEEeeC--C
Q 003363 230 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPL--N 306 (826)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~~~~wSPD--g 306 (826)
..|.+||+.+++...+. -......+..++|+|+ |
T Consensus 79 -------------------------------------------g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 115 (379)
T 3jrp_A 79 -------------------------------------------GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG 115 (379)
T ss_dssp -------------------------------------------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC
T ss_pred -------------------------------------------CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC
Confidence 46899999988632221 0334456889999999 7
Q ss_pred CCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecC-----
Q 003363 307 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSP----- 381 (826)
Q Consensus 307 ~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~Sp----- 381 (826)
+. |+..+ .+..|.++|+... .......+..+...+..+.|+|
T Consensus 116 ~~----l~~~~---------------~d~~i~v~d~~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 116 PL----LLVAS---------------SDGKVSVVEFKEN--------------GTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp SE----EEEEE---------------TTSEEEEEECCTT--------------SCCCEEEEECCTTCEEEEEECCCC---
T ss_pred CE----EEEec---------------CCCcEEEEecCCC--------------CceeeEEecCCCCceEEEEEcCccccc
Confidence 76 66665 3347888887210 1122344556666788899999
Q ss_pred --------CCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCcccc
Q 003363 382 --------DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 453 (826)
Q Consensus 382 --------DG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~ 453 (826)
||+.|+..+.+ ..|++||+.++.... ........ +...+..+.|+|
T Consensus 163 ~~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~------~~~~~~~~---------h~~~v~~~~~sp 216 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGAD-----------NLVKIWKYNSDAQTY------VLESTLEG---------HSDWVRDVAWSP 216 (379)
T ss_dssp -------CTTCEEEEEETT-----------SCEEEEEEETTTTEE------EEEEEECC---------CSSCEEEEEECC
T ss_pred cccccCCCCCCEEEEEeCC-----------CeEEEEEecCCCcce------eeEEEEec---------ccCcEeEEEECC
Confidence 78988877654 358888887654310 01110100 112345778999
Q ss_pred C---CCEEEEEEEeCCeEEEEEEECCCCc---EEEecC---CCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 003363 454 D---GCTMLLSSIWGSSQVIISVNVSSGE---LLRITP---AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 454 D---g~~l~~~~~~~~~~~l~~vdl~tg~---~~~lt~---~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 521 (826)
| ++ ++++...++...+| |+.+++ ...+.. ....+....|+++++.++....+ . .+.+.++.
T Consensus 217 ~~~~~~-~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d--g--~i~iw~~~ 286 (379)
T 3jrp_A 217 TVLLRS-YLASVSQDRTCIIW--TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD--N--KVTLWKEN 286 (379)
T ss_dssp CCSSSE-EEEEEETTSCEEEE--EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESS--S--SEEEEEEE
T ss_pred CCCCCC-eEEEEeCCCEEEEE--eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCC--C--cEEEEeCC
Confidence 9 55 55666656665665 444543 233322 22345566889999876655542 2 25555543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=2e-09 Score=117.81 Aligned_cols=248 Identities=12% Similarity=0.064 Sum_probs=141.7
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003363 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (826)
Q Consensus 103 ~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (826)
.++|||+.++... ....+.++++.+. .....+.... ..+...+|+|||++|+..+..+ .+
T Consensus 130 ~~s~dg~~l~s~~---------~d~~i~iwd~~~~-~~~~~~~~h~-----~~v~~~~~~p~~~~l~s~s~d~-----~v 189 (393)
T 1erj_A 130 CFSPDGKFLATGA---------EDRLIRIWDIENR-KIVMILQGHE-----QDIYSLDYFPSGDKLVSGSGDR-----TV 189 (393)
T ss_dssp EECTTSSEEEEEE---------TTSCEEEEETTTT-EEEEEECCCS-----SCEEEEEECTTSSEEEEEETTS-----EE
T ss_pred EECCCCCEEEEEc---------CCCeEEEEECCCC-cEEEEEccCC-----CCEEEEEEcCCCCEEEEecCCC-----cE
Confidence 3489999886532 2345666665322 1122232222 4588999999999998776543 56
Q ss_pred EEec--CCceeEEEecCCCccccccCCCcccceeecC-CCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCccee
Q 003363 183 ELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNS-DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (826)
Q Consensus 183 ~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSP-Dg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (826)
.+|+ .++..........+ ..+.|+| ||+.|+..+.+
T Consensus 190 ~iwd~~~~~~~~~~~~~~~v----------~~~~~~~~~~~~l~~~s~d------------------------------- 228 (393)
T 1erj_A 190 RIWDLRTGQCSLTLSIEDGV----------TTVAVSPGDGKYIAAGSLD------------------------------- 228 (393)
T ss_dssp EEEETTTTEEEEEEECSSCE----------EEEEECSTTCCEEEEEETT-------------------------------
T ss_pred EEEECCCCeeEEEEEcCCCc----------EEEEEECCCCCEEEEEcCC-------------------------------
Confidence 7773 34333333332222 6889999 89988876543
Q ss_pred ecCCCccCCCccCceEEEEEccCCceEe-ccC-----CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccC
Q 003363 260 EEDWGETYAGKRQPSLFVININSGEVQA-VKG-----IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNR 333 (826)
Q Consensus 260 ~~d~g~~~~~~~~~~l~v~d~~~g~~~~-l~~-----~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~ 333 (826)
..|.+||+.+++... +.. ......+..++|+|||+. |+..+ .
T Consensus 229 -------------~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~----l~s~s---------------~ 276 (393)
T 1erj_A 229 -------------RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS----VVSGS---------------L 276 (393)
T ss_dssp -------------SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE----EEEEE---------------T
T ss_pred -------------CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCE----EEEEe---------------C
Confidence 468889988876543 210 122345778999999997 76555 2
Q ss_pred CCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCC
Q 003363 334 PCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 412 (826)
Q Consensus 334 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~ 412 (826)
+..|.++|+........ ......+. ...+..+...+....|+|||++|+..+.+ ..|++||+.
T Consensus 277 d~~v~~wd~~~~~~~~~-----~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D-----------~~v~iwd~~ 340 (393)
T 1erj_A 277 DRSVKLWNLQNANNKSD-----SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD-----------RGVLFWDKK 340 (393)
T ss_dssp TSEEEEEEC--------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT-----------SEEEEEETT
T ss_pred CCEEEEEECCCCCCccc-----ccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCC-----------CeEEEEECC
Confidence 33677777631100000 00001111 23445566667889999999998866644 458999988
Q ss_pred CCCCCCcccceee-eeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003363 413 TNGNFSSLEKIVD-VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (826)
Q Consensus 413 ~~~~~~~~~~~~~-~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vd 474 (826)
++.......+... +..+. -.....|+||++ ++++...++...||.+.
T Consensus 341 ~~~~~~~l~~h~~~v~~v~--------------~~~~~~~~p~~~-~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 341 SGNPLLMLQGHRNSVISVA--------------VANGSSLGPEYN-VFATGSGDCKARIWKYK 388 (393)
T ss_dssp TCCEEEEEECCSSCEEEEE--------------ECSSCTTCTTCE-EEEEEETTSEEEEEEEE
T ss_pred CCeEEEEECCCCCCEEEEE--------------ecCCcCcCCCCC-EEEEECCCCcEEECccc
Confidence 7654321111110 11100 001234567776 55666777777888664
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.19 E-value=8.6e-09 Score=110.84 Aligned_cols=254 Identities=12% Similarity=0.044 Sum_probs=141.1
Q ss_pred cccEEEEeCCC----CCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecC-CCCeEEEEe
Q 003363 154 TGASAVVPSPS----GSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNS-DETLIAYVA 226 (826)
Q Consensus 154 ~~~~~~~~SPd----G~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSP-Dg~~ia~~~ 226 (826)
..+...+|+|+ |+.|+.....+ .+.+|+ .++....+. ...+.| ..+.|+| |++.|+..+
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~---~~~~~i------~~~~~~~~~~~~l~s~~ 135 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRG-----IIRIINPITMQCIKHYV---GHGNAI------NELKFHPRDPNLLLSVS 135 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTC-----EEEEECTTTCCEEEEEE---SCCSCE------EEEEECSSCTTEEEEEE
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCC-----EEEEEEchhceEeeeec---CCCCcE------EEEEECCCCCCEEEEEe
Confidence 35888999999 66777765543 566773 344433332 222223 7999999 888887764
Q ss_pred ecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC--CCCCCccceEEEee
Q 003363 227 EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG--IPKSLSVGQVVWAP 304 (826)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~--~~~~~~~~~~~wSP 304 (826)
.+ ..|.+||+.+++...... ......+..++|+|
T Consensus 136 ~d--------------------------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (366)
T 3k26_A 136 KD--------------------------------------------HALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 171 (366)
T ss_dssp TT--------------------------------------------SCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred CC--------------------------------------------CeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence 32 569999999887655410 13345678999999
Q ss_pred CCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhh-----cCCC-------CCCcceecCCCCc
Q 003363 305 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELK-----ESSS-------EDLPVVNLTESIS 372 (826)
Q Consensus 305 Dg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~-----~~~~-------~~~~~~~Lt~~~~ 372 (826)
||+. |+..+ .+..|+++|+............. .... .......+..+..
T Consensus 172 ~~~~----l~~~~---------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T 3k26_A 172 LGEK----IMSCG---------------MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN 232 (366)
T ss_dssp TSSE----EEEEE---------------TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred CCCE----EEEec---------------CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence 9997 77665 23468888874221110000000 0000 0000111222455
Q ss_pred cccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCC--cccceeeeeeeeeccCCCCCcccccCCCCCCc
Q 003363 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS--SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 450 (826)
Q Consensus 373 ~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 450 (826)
.+....|+ |+.|+..+.+ ..|.+||+.++.... +.........+..... ....+..+.
T Consensus 233 ~v~~~~~~--~~~l~~~~~d-----------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~ 292 (366)
T 3k26_A 233 YVDCVRWL--GDLILSKSCE-----------NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY-------SQCDIWYMR 292 (366)
T ss_dssp CCCEEEEE--TTEEEEECSS-----------SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC-------SSCCSSCCC
T ss_pred eEEEEEEc--CCEEEEEecC-----------CEEEEEeCCCccccccccccCCcchheeccccc-------cCCcEEEEE
Confidence 67778888 6676655543 468889987754421 1111111111110000 122456788
Q ss_pred cccC--CCEEEEEEEeCCeEEEEEEECCCCc-----EEEecCC--CCCeeeEEEeecCCEEEEEEe
Q 003363 451 WLSD--GCTMLLSSIWGSSQVIISVNVSSGE-----LLRITPA--ESNFSWSLLTLDGDNIIAVSS 507 (826)
Q Consensus 451 ws~D--g~~l~~~~~~~~~~~l~~vdl~tg~-----~~~lt~~--~~~~~~~~~s~dg~~l~~~~s 507 (826)
|+|| |+.|+.. ..++ .|..+|+.+++ ...+... ...+....|+++++.|+....
T Consensus 293 ~s~~~~~~~l~~~-~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 355 (366)
T 3k26_A 293 FSMDFWQKMLALG-NQVG--KLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCD 355 (366)
T ss_dssp CEECTTSSEEEEE-CTTS--CEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred EcCCCCCcEEEEE-ecCC--cEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeC
Confidence 9999 8866543 3334 45666777764 2244443 345666788998887665543
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.19 E-value=6.8e-10 Score=120.97 Aligned_cols=288 Identities=9% Similarity=0.015 Sum_probs=157.8
Q ss_pred EecCCCCc-ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCC-CCCeEEEEecCCCCC
Q 003363 101 FNSGNGNG-TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP-SGSKLLVVRNPENES 178 (826)
Q Consensus 101 ~~~~s~dg-~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SP-dG~~la~~~~~~~~~ 178 (826)
.-.++||| +.++... ....+.++++.+.. ....+...+. ...+....||| +|+.|+.....+
T Consensus 78 ~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~-~~~~~~~~~h---~~~v~~~~~~~~~~~~l~s~~~d~--- 141 (383)
T 3ei3_B 78 SLEWHPTHPTTVAVGS---------KGGDIILWDYDVQN-KTSFIQGMGP---GDAITGMKFNQFNTNQLFVSSIRG--- 141 (383)
T ss_dssp EEEECSSCTTEEEEEE---------BTSCEEEEETTSTT-CEEEECCCST---TCBEEEEEEETTEEEEEEEEETTT---
T ss_pred EEEECCCCCCEEEEEc---------CCCeEEEEeCCCcc-cceeeecCCc---CCceeEEEeCCCCCCEEEEEeCCC---
Confidence 33458888 5554432 23456666664322 1222221111 14688999999 677777765543
Q ss_pred CeEEEEec-CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcc
Q 003363 179 PIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 257 (826)
Q Consensus 179 ~~~~~i~~-~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (826)
.+.+|+ .+...+.........+. +..+.|+||++.|+..+.+.... .|+. ..........+.......
T Consensus 142 --~i~iwd~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~~l~~~~~d~~i~--i~d~-~~~~~~~~~~h~~~v~~~ 210 (383)
T 3ei3_B 142 --ATTLRDFSGSVIQVFAKTDSWDYW------YCCVDVSVSRQMLATGDSTGRLL--LLGL-DGHEIFKEKLHKAKVTHA 210 (383)
T ss_dssp --EEEEEETTSCEEEEEECCCCSSCC------EEEEEEETTTTEEEEEETTSEEE--EEET-TSCEEEEEECSSSCEEEE
T ss_pred --EEEEEECCCCceEEEeccCCCCCC------eEEEEECCCCCEEEEECCCCCEE--EEEC-CCCEEEEeccCCCcEEEE
Confidence 566773 33333333222222222 37999999999999887765433 2222 111112223345555677
Q ss_pred eeecCCC-ccCCCccCceEEEEEccC----CceEeccCCCCCCccceEEEee-CCCCCccEEEEEeecCcceeeeeeeec
Q 003363 258 DWEEDWG-ETYAGKRQPSLFVININS----GEVQAVKGIPKSLSVGQVVWAP-LNEGLHQYLVFVGWSSETRKLGIKYCY 331 (826)
Q Consensus 258 ~~~~d~g-~~~~~~~~~~l~v~d~~~----g~~~~l~~~~~~~~~~~~~wSP-Dg~~~~~~lvf~~~~~~~~~~g~~~~~ 331 (826)
.|.++.. ..+++..+..|.+||+.+ ++.... ......+..++|+| ||+. |+..+
T Consensus 211 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~~----l~~~~-------------- 270 (383)
T 3ei3_B 211 EFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE--MPHEKPVNAAYFNPTDSTK----LLTTD-------------- 270 (383)
T ss_dssp EECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE--EECSSCEEEEEECTTTSCE----EEEEE--------------
T ss_pred EECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE--ecCCCceEEEEEcCCCCCE----EEEEc--------------
Confidence 7888844 345566678999999987 444443 23445678999999 9997 77665
Q ss_pred cCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCC------CccccCceecCCCCEEEEEeccCCCCCCCCcccc
Q 003363 332 NRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTES------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 404 (826)
Q Consensus 332 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~------~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~ 404 (826)
.+..|+++|+. ++. ...+..+ ........|+|++..++.....+....| ....
T Consensus 271 -~d~~i~iwd~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~--s~d~ 330 (383)
T 3ei3_B 271 -QRNEIRVYSSY-----------------DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLL--NDKR 330 (383)
T ss_dssp -SSSEEEEEETT-----------------BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCT--TCCC
T ss_pred -CCCcEEEEECC-----------------CCccccccccccccccccccceEEeccCCCCceEEEecCCccccc--CCCC
Confidence 23478888873 222 2222211 1122235788888776644332211112 2346
Q ss_pred eEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECC
Q 003363 405 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 476 (826)
Q Consensus 405 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~ 476 (826)
.|++||+.+++....... .. ....+..++|+|||+.|+.. . ++. |..+|++
T Consensus 331 ~i~iwd~~~~~~~~~l~~----------~~-------~~~~~~~~~~s~~g~~l~s~-s-d~~--i~iw~~~ 381 (383)
T 3ei3_B 331 TIDIYDANSGGLVHQLRD----------PN-------AAGIISLNKFSPTGDVLASG-M-GFN--ILIWNRE 381 (383)
T ss_dssp CEEEEETTTCCEEEEECB----------TT-------BCSCCCEEEECTTSSEEEEE-E-TTE--EEEEECC
T ss_pred eEEEEecCCCceeeeecC----------CC-------CCceEEEEEEecCccEEEEe-c-CCc--EEEEecC
Confidence 799999887654211100 00 00112344899999966544 3 444 4444554
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.18 E-value=5e-10 Score=122.41 Aligned_cols=231 Identities=10% Similarity=-0.007 Sum_probs=134.9
Q ss_pred ceeEEEEEEeecCCC-----CccceeecCCcceecccEEEEeCCC----C---CeEEEEecCCCCCCeEEEEecCCce--
Q 003363 125 RKKFMLSTVISKENE-----NSVTFQWAPFPVEMTGASAVVPSPS----G---SKLLVVRNPENESPIQFELWSQSQL-- 190 (826)
Q Consensus 125 ~~~~l~~~~i~~~~~-----~~~~lt~~~~~~~~~~~~~~~~SPd----G---~~la~~~~~~~~~~~~~~i~~~~~~-- 190 (826)
....+.++++..... ....+.... ..+...+|+|+ | +.|+..... +.-.+|.+......
T Consensus 34 ~dg~i~iw~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~g~~~~~l~s~~~d--g~i~iw~~~~~~~~~~ 106 (397)
T 1sq9_A 34 GDGYLKVWDNKLLDNENPKDKSYSHFVHK-----SGLHHVDVLQAIERDAFELCLVATTSFS--GDLLFYRITREDETKK 106 (397)
T ss_dssp TTSEEEEEESBCCTTCCGGGGEEEEECCT-----TCEEEEEEEEEEETTTEEEEEEEEEETT--SCEEEEEEEECTTTCC
T ss_pred CCCEEEEEECCCcccccCCCcceEEecCC-----CcEEEEEEecccccCCccccEEEEEcCC--CCEEEEEccCCccccc
Confidence 445777777754321 122222222 45889999999 9 888877653 33333333332220
Q ss_pred --eEEEecCCCc--cccccCCCcccceeec----CCCCe-EEEEeecCCCCCCCccCCC------CCCCC-----CC---
Q 003363 191 --EKEFHVPQTV--HGSVYADGWFEGISWN----SDETL-IAYVAEEPSPSKPTFSLGS------TKGGS-----SD--- 247 (826)
Q Consensus 191 --~~~~~~~~~~--~g~v~~~~~~~~~~wS----PDg~~-ia~~~~~~~~~~~~~~~~~------~~~~~-----~~--- 247 (826)
.+........ .+.| ..+.|+ ||++. |+..+.+.... .|+... ..... ..
T Consensus 107 ~~~~~~~~~~~~~~~~~v------~~~~~~~~~~~~~~~~l~~~~~dg~i~--iwd~~~~~~~~~~~~~~~~~~~~~~~~ 178 (397)
T 1sq9_A 107 VIFEKLDLLDSDMKKHSF------WALKWGASNDRLLSHRLVATDVKGTTY--IWKFHPFADESNSLTLNWSPTLELQGT 178 (397)
T ss_dssp EEEEEECCSCTTGGGSCE------EEEEEECCC----CEEEEEEETTSCEE--EEEEESSSSHHHHTTTCCCCEEEEEEE
T ss_pred ccceeecccccccCCCcE------EEEEEeeccCCCCceEEEEEeCCCcEE--EEeCCccccccccceeeccCcceeeee
Confidence 2222211000 1333 799999 99999 88777665433 233211 11111 11
Q ss_pred ----ccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCC---C---CCccceEEEeeCCCCCccEEEEEe
Q 003363 248 ----KDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP---K---SLSVGQVVWAPLNEGLHQYLVFVG 317 (826)
Q Consensus 248 ----~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~---~---~~~~~~~~wSPDg~~~~~~lvf~~ 317 (826)
..+........|.++. ..+++.....|.+||+.+++..... .. . ...+..++|+|||+. |+..+
T Consensus 179 ~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~h~~~~~~i~~i~~~~~~~~----l~~~~ 252 (397)
T 1sq9_A 179 VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNF-ESQHSMINNSNSIRSVKFSPQGSL----LAIAH 252 (397)
T ss_dssp ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEE-ECCC---CCCCCEEEEEECSSTTE----EEEEE
T ss_pred eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEE-eccccccccCCccceEEECCCCCE----EEEEe
Confidence 2234455667788885 6666667789999999988765441 11 2 556789999999997 77665
Q ss_pred ecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCC-------------CCccccCceecCCC
Q 003363 318 WSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTE-------------SISSAFFPRFSPDG 383 (826)
Q Consensus 318 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~-------------~~~~~~~p~~SpDG 383 (826)
... ....|+++|+ .+++ ...+.. +...+....|+|||
T Consensus 253 ~d~------------~~g~i~i~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 303 (397)
T 1sq9_A 253 DSN------------SFGCITLYET-----------------EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 303 (397)
T ss_dssp EET------------TEEEEEEEET-----------------TTCCEEEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred cCC------------CCceEEEEEC-----------------CCCcccceeccCcccccccccccccCCcEEEEEECCCC
Confidence 210 1136888887 3333 344444 55668889999999
Q ss_pred CEEEEEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 384 ~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
++|+..+.+ ..|++||+.+++.
T Consensus 304 ~~l~~~~~d-----------g~i~iwd~~~~~~ 325 (397)
T 1sq9_A 304 ETLCSAGWD-----------GKLRFWDVKTKER 325 (397)
T ss_dssp SEEEEEETT-----------SEEEEEETTTTEE
T ss_pred CEEEEEeCC-----------CeEEEEEcCCCce
Confidence 998866643 4699999877543
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.18 E-value=2.5e-09 Score=112.12 Aligned_cols=237 Identities=12% Similarity=0.163 Sum_probs=138.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CC---ceeEEEecCCCccccccCCCcccceeecCC--CCeEEEEee
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QS---QLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAE 227 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~---~~~~~~~~~~~~~g~v~~~~~~~~~~wSPD--g~~ia~~~~ 227 (826)
..+...+|||||++||..+.++ .+.+|+ .+ +....+ .+..+.| ..++|+|+ |+.||..+.
T Consensus 10 ~~V~~~~~s~~g~~las~s~D~-----~v~iw~~~~~~~~~~~~l---~gH~~~V------~~v~~s~~~~g~~l~s~s~ 75 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSDK-----TIKIFEVEGETHKLIDTL---TGHEGPV------WRVDWAHPKFGTILASCSY 75 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEEBCSSCBCCCEEE---CCCSSCE------EEEEECCGGGCSEEEEEET
T ss_pred CceEEEEECCCCCEEEEEeCCC-----EEEEEecCCCCcEEEEEE---ccccCCe------EEEEecCCCcCCEEEEEcC
Confidence 3588899999999999876543 455662 21 222222 2333334 78999974 888887654
Q ss_pred cCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC-CCCCCccceEEEeeC-
Q 003363 228 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVWAPL- 305 (826)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~-~~~~~~~~~~~wSPD- 305 (826)
+ ..|.+||+.+++...+.. ......+..++|+|+
T Consensus 76 D--------------------------------------------~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 111 (297)
T 2pm7_B 76 D--------------------------------------------GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHE 111 (297)
T ss_dssp T--------------------------------------------TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGG
T ss_pred C--------------------------------------------CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCC
Confidence 3 578999998875322210 223446788999998
Q ss_pred -CCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCC--
Q 003363 306 -NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPD-- 382 (826)
Q Consensus 306 -g~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpD-- 382 (826)
|+. |+..+ .+..|.++|+... .......+..+...+....|+|+
T Consensus 112 ~g~~----l~s~s---------------~d~~v~~wd~~~~--------------~~~~~~~~~~h~~~v~~~~~~p~~~ 158 (297)
T 2pm7_B 112 YGPM----LLVAS---------------SDGKVSVVEFKEN--------------GTTSPIIIDAHAIGVNSASWAPATI 158 (297)
T ss_dssp GCSE----EEEEE---------------TTSEEEEEEBCSS--------------SCBCCEEEECCSSCEEEEEECCCC-
T ss_pred CCcE----EEEEE---------------CCCcEEEEEecCC--------------CceeeeeeecccCccceEeecCCcc
Confidence 665 65554 2346788887210 01113345556667788899997
Q ss_pred -----------CCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCcc
Q 003363 383 -----------GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 451 (826)
Q Consensus 383 -----------G~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~w 451 (826)
+++|+..+.+ ..|.+||+.++.... .+...+. | +...+..++|
T Consensus 159 ~~~~~~~~~~~~~~l~sgs~D-----------~~v~lwd~~~~~~~~------~~~~~l~--------~-H~~~V~~v~~ 212 (297)
T 2pm7_B 159 EEDGEHNGTKESRKFVTGGAD-----------NLVKIWKYNSDAQTY------VLESTLE--------G-HSDWVRDVAW 212 (297)
T ss_dssp -----------CCEEEEEETT-----------SCEEEEEEETTTTEE------EEEEEEC--------C-CSSCEEEEEE
T ss_pred cccccCCCCCCcceEEEEcCC-----------CcEEEEEEcCCCceE------EEEEEec--------C-CCCceEEEEE
Confidence 4666655544 347788876644210 0011000 0 1123457889
Q ss_pred ccCC--CEEEEEEEeCCeEEEEEEECCCCcE-EEec---CCCCCeeeEEEeecCCEEEEEEe
Q 003363 452 LSDG--CTMLLSSIWGSSQVIISVNVSSGEL-LRIT---PAESNFSWSLLTLDGDNIIAVSS 507 (826)
Q Consensus 452 s~Dg--~~l~~~~~~~~~~~l~~vdl~tg~~-~~lt---~~~~~~~~~~~s~dg~~l~~~~s 507 (826)
+||+ ..++++...++...||.++...+.. ..+. .....+....|+++++.|+....
T Consensus 213 sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~ 274 (297)
T 2pm7_B 213 SPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 274 (297)
T ss_dssp CCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET
T ss_pred CCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC
Confidence 9996 3566677777777777655322222 2222 11223455678999886655443
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.9e-09 Score=116.87 Aligned_cols=239 Identities=12% Similarity=0.099 Sum_probs=152.9
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
.....||+ +.++.....+ .+.+| ..++........ ..+. +..++|+|||+.|+..+.+
T Consensus 96 ~~~~~~s~--~~l~~~~~d~-----~v~lw~~~~~~~~~~~~~~--~~~~------v~~v~~s~~~~~l~~~~~d----- 155 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALER-----NVYVWNADSGSVSALAETD--ESTY------VASVKWSHDGSFLSVGLGN----- 155 (401)
T ss_dssp CBCEEECT--TSEEEEEETT-----EEEEEETTTCCEEEEEECC--TTCC------EEEEEECTTSSEEEEEETT-----
T ss_pred EEEEeecC--CCEEEEECCC-----eEEEeeCCCCcEeEeeecC--CCCC------EEEEEECCCCCEEEEECCC-----
Confidence 33466665 4455554433 45666 345555555432 2222 2799999999999886533
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (826)
..|.+||+.+++..... ......+..++| +++. |
T Consensus 156 ---------------------------------------g~i~iwd~~~~~~~~~~-~~~~~~v~~~~~--~~~~----l 189 (401)
T 4aez_A 156 ---------------------------------------GLVDIYDVESQTKLRTM-AGHQARVGCLSW--NRHV----L 189 (401)
T ss_dssp ---------------------------------------SCEEEEETTTCCEEEEE-CCCSSCEEEEEE--ETTE----E
T ss_pred ---------------------------------------CeEEEEECcCCeEEEEe-cCCCCceEEEEE--CCCE----E
Confidence 46899999887754431 334446677888 4554 5
Q ss_pred EEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccC
Q 003363 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (826)
Q Consensus 314 vf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~ 393 (826)
+..+ .+..|+.+|+.. .......+..+...+....|+|||+.|+..+.+
T Consensus 190 ~~~~---------------~dg~i~i~d~~~---------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d- 238 (401)
T 4aez_A 190 SSGS---------------RSGAIHHHDVRI---------------ANHQIGTLQGHSSEVCGLAWRSDGLQLASGGND- 238 (401)
T ss_dssp EEEE---------------TTSEEEEEETTS---------------SSCEEEEEECCSSCEEEEEECTTSSEEEEEETT-
T ss_pred EEEc---------------CCCCEEEEeccc---------------CcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCC-
Confidence 5544 334788899821 123355666677788899999999998877654
Q ss_pred CCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003363 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (826)
Q Consensus 394 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~v 473 (826)
..|.+||+.++........ ....+..+.|+|++..++++.....+..|..+
T Consensus 239 ----------~~v~iwd~~~~~~~~~~~~-------------------~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~ 289 (401)
T 4aez_A 239 ----------NVVQIWDARSSIPKFTKTN-------------------HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289 (401)
T ss_dssp ----------SCEEEEETTCSSEEEEECC-------------------CSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred ----------CeEEEccCCCCCccEEecC-------------------CcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence 3589999887443211000 11235578899999878776543345668888
Q ss_pred ECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003363 474 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (826)
Q Consensus 474 dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 522 (826)
|+.+++..........+....|+++++.++......+. .+.+.++..
T Consensus 290 d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg--~i~v~~~~~ 336 (401)
T 4aez_A 290 NAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDN--NLSIWSYSS 336 (401)
T ss_dssp ETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTC--EEEEEEEET
T ss_pred ECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCC--cEEEEecCC
Confidence 99888877665555566777899999987776543333 466666544
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-08 Score=108.66 Aligned_cols=163 Identities=9% Similarity=0.006 Sum_probs=106.5
Q ss_pred cceeecC--CCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEec
Q 003363 211 EGISWNS--DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV 288 (826)
Q Consensus 211 ~~~~wSP--Dg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l 288 (826)
..+.|+| +|+.|+..+.+ ..|.+||+.+++...+
T Consensus 129 ~~~~~~~~~~~~~l~s~s~d--------------------------------------------g~i~~wd~~~~~~~~~ 164 (343)
T 3lrv_A 129 IYMYGHNEVNTEYFIWADNR--------------------------------------------GTIGFQSYEDDSQYIV 164 (343)
T ss_dssp EEEECCC---CCEEEEEETT--------------------------------------------CCEEEEESSSSCEEEE
T ss_pred EEEEcCCCCCCCEEEEEeCC--------------------------------------------CcEEEEECCCCcEEEE
Confidence 7899999 99988876543 4689999999887654
Q ss_pred cCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc--ee
Q 003363 289 KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VN 366 (826)
Q Consensus 289 ~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~ 366 (826)
........+..++|+|||+. |+..+ .+..|.++|+ .+++. ..
T Consensus 165 ~~~~~~~~i~~~~~~pdg~~----lasg~---------------~dg~i~iwd~-----------------~~~~~~~~~ 208 (343)
T 3lrv_A 165 HSAKSDVEYSSGVLHKDSLL----LALYS---------------PDGILDVYNL-----------------SSPDQASSR 208 (343)
T ss_dssp ECCCSSCCCCEEEECTTSCE----EEEEC---------------TTSCEEEEES-----------------SCTTSCCEE
T ss_pred EecCCCCceEEEEECCCCCE----EEEEc---------------CCCEEEEEEC-----------------CCCCCCccE
Confidence 21223335788999999996 65554 3347889998 44443 45
Q ss_pred cCC-CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCC
Q 003363 367 LTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 445 (826)
Q Consensus 367 Lt~-~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~ 445 (826)
+.. +...+....|||||++|+..+ + ..|.+||+.++........... ..+ .
T Consensus 209 ~~~~h~~~v~~l~fs~~g~~l~s~~-~-----------~~v~iwd~~~~~~~~~~~~~~~----------~~~------~ 260 (343)
T 3lrv_A 209 FPVDEEAKIKEVKFADNGYWMVVEC-D-----------QTVVCFDLRKDVGTLAYPTYTI----------PEF------K 260 (343)
T ss_dssp CCCCTTSCEEEEEECTTSSEEEEEE-S-----------SBEEEEETTSSTTCBSSCCCBC--------------------
T ss_pred EeccCCCCEEEEEEeCCCCEEEEEe-C-----------CeEEEEEcCCCCcceeeccccc----------ccc------c
Confidence 665 677789999999999988766 2 1599999987654221111000 000 1
Q ss_pred C--CCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003363 446 I--LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (826)
Q Consensus 446 ~--~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~ 481 (826)
. ..++|+|||+.|+..+..++...+|.++.......
T Consensus 261 ~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~ 298 (343)
T 3lrv_A 261 TGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT 298 (343)
T ss_dssp -CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEE
T ss_pred ccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceE
Confidence 1 13789999997765443366777777764444433
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.15 E-value=3.5e-09 Score=112.77 Aligned_cols=287 Identities=11% Similarity=0.023 Sum_probs=154.3
Q ss_pred cccEEEEeCCCC-CeEEEEecCCCCCCeEEEEecCC-ceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSG-SKLLVVRNPENESPIQFELWSQS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG-~~la~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
..+...+|||++ +.||..+.+ +.-.+|.+.... ........-.+..+.| ..+.|+|||+.|+..+.+...
T Consensus 39 ~~V~~v~~sp~~~~~l~S~s~D--~~i~vWd~~~~~~~~~~~~~~l~~h~~~V------~~~~~s~dg~~l~s~~~d~~i 110 (340)
T 4aow_A 39 GWVTQIATTPQFPDMILSASRD--KTIIMWKLTRDETNYGIPQRALRGHSHFV------SDVVISSDGQFALSGSWDGTL 110 (340)
T ss_dssp SCEEEEEECTTCTTEEEEEETT--SCEEEEEECCSSSCSEEEEEEECCCSSCE------EEEEECTTSSEEEEEETTSEE
T ss_pred CCEEEEEEeCCCCCEEEEEcCC--CeEEEEECCCCCcccceeeEEEeCCCCCE------EEEEECCCCCEEEEEcccccc
Confidence 468999999984 666655543 332333333221 1111111112222333 789999999999988766532
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
.. |......................+.++....+++..+..+.+||+.+..............+..+.|++++..
T Consensus 111 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--- 185 (340)
T 4aow_A 111 RL--WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN--- 185 (340)
T ss_dssp EE--EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSS---
T ss_pred eE--EeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCC---
Confidence 21 1111000000001111111122334443333444456788999987765544421233445677899999876
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEe
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLS 390 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s 390 (826)
.++.+-. .+..|..+|+ .+++ ...+..+...+....|+|||++|+..+
T Consensus 186 -~~~~s~~-------------~d~~i~i~d~-----------------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s 234 (340)
T 4aow_A 186 -PIIVSCG-------------WDKLVKVWNL-----------------ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG 234 (340)
T ss_dssp -CEEEEEE-------------TTSCEEEEET-----------------TTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred -cEEEEEc-------------CCCEEEEEEC-----------------CCCceeeEecCCCCcEEEEEECCCCCEEEEEe
Confidence 4443311 2346888887 4443 455666677788899999999887666
Q ss_pred ccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEE
Q 003363 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470 (826)
Q Consensus 391 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l 470 (826)
.+ ..|.+||+.+......... ...+..+.|+|++. ++.. ..++ .|
T Consensus 235 ~D-----------g~i~iwd~~~~~~~~~~~~--------------------~~~v~~~~~~~~~~-~~~~-~~d~--~i 279 (340)
T 4aow_A 235 KD-----------GQAMLWDLNEGKHLYTLDG--------------------GDIINALCFSPNRY-WLCA-ATGP--SI 279 (340)
T ss_dssp TT-----------CEEEEEETTTTEEEEEEEC--------------------SSCEEEEEECSSSS-EEEE-EETT--EE
T ss_pred CC-----------CeEEEEEeccCceeeeecC--------------------CceEEeeecCCCCc-eeec-cCCC--EE
Confidence 44 4688999877443211000 01233567889886 4333 3344 45
Q ss_pred EEEECCCCcEEEecC----------CCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 471 ISVNVSSGELLRITP----------AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 471 ~~vdl~tg~~~~lt~----------~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
..+|+.++....-.. ....+....|+++++.|+....+ . .|.+-++.++
T Consensus 280 ~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D-g---~v~iW~~~tG 338 (340)
T 4aow_A 280 KIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD-N---LVRVWQVTIG 338 (340)
T ss_dssp EEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETT-S---CEEEEEEEC-
T ss_pred EEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCC-C---EEEEEeCCCc
Confidence 566777765433221 12234556788898876554332 2 2566665544
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.14 E-value=8.6e-10 Score=130.55 Aligned_cols=247 Identities=11% Similarity=0.028 Sum_probs=150.5
Q ss_pred cccEEEEeCCCCCe-EEEEecCCCCCCeEEEEec---CCce-eEEEecCCCccccccCCCcccceeecCCCCeEEEEeec
Q 003363 154 TGASAVVPSPSGSK-LLVVRNPENESPIQFELWS---QSQL-EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 228 (826)
Q Consensus 154 ~~~~~~~~SPdG~~-la~~~~~~~~~~~~~~i~~---~~~~-~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~ 228 (826)
..+...+|+|++.. |+..+..+ .+.+|+ .... ......-.+..+.| ..++|||||+.|+..+.+
T Consensus 383 ~~V~~v~~~~~~~~~l~s~s~D~-----~i~~W~~~~~~~~~~~~~~~~~~h~~~v------~~v~~s~~g~~l~sgs~D 451 (694)
T 3dm0_A 383 DMVTAIATPIDNADIIVSASRDK-----SIILWKLTKDDKAYGVAQRRLTGHSHFV------EDVVLSSDGQFALSGSWD 451 (694)
T ss_dssp SCEEEEECCTTCCSEEEEEETTS-----EEEEEECCCSTTCSCEEEEEEECCSSCE------EEEEECTTSSEEEEEETT
T ss_pred ceeEEEEecCCCCCEEEEEeCCC-----cEEEEEccCCCcccccccceecCCCCcE------EEEEECCCCCEEEEEeCC
Confidence 45888999998754 44444332 566662 1111 11111111222333 789999999999988877
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEecc--CCCCCCccceEEEeeCC
Q 003363 229 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK--GIPKSLSVGQVVWAPLN 306 (826)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~~~~wSPDg 306 (826)
...+ .|+............+...+....|+++....+++..+..|.+||..+.....+. .......+..++|+|++
T Consensus 452 g~v~--vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 452 GELR--LWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529 (694)
T ss_dssp SEEE--EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred CcEE--EEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence 6544 3332222222233345555667788888666677777889999998766554442 11223357789999998
Q ss_pred CCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCE
Q 003363 307 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKF 385 (826)
Q Consensus 307 ~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~ 385 (826)
... +++++. .+..|.++|+ .++. ...+..+.+.+....|||||++
T Consensus 530 ~~~---~l~s~s--------------~d~~v~vwd~-----------------~~~~~~~~~~~h~~~v~~v~~spdg~~ 575 (694)
T 3dm0_A 530 LQP---TIVSAS--------------WDKTVKVWNL-----------------SNCKLRSTLAGHTGYVSTVAVSPDGSL 575 (694)
T ss_dssp SSC---EEEEEE--------------TTSCEEEEET-----------------TTCCEEEEECCCSSCEEEEEECTTSSE
T ss_pred Ccc---eEEEEe--------------CCCeEEEEEC-----------------CCCcEEEEEcCCCCCEEEEEEeCCCCE
Confidence 431 344431 3347888998 4443 4566777778899999999999
Q ss_pred EEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC
Q 003363 386 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 465 (826)
Q Consensus 386 l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~ 465 (826)
|+..+.+ ..|.+||+.++........ ...+..++|+||+..|.. +. +
T Consensus 576 l~sg~~D-----------g~i~iwd~~~~~~~~~~~~--------------------~~~v~~~~~sp~~~~l~~-~~-~ 622 (694)
T 3dm0_A 576 CASGGKD-----------GVVLLWDLAEGKKLYSLEA--------------------NSVIHALCFSPNRYWLCA-AT-E 622 (694)
T ss_dssp EEEEETT-----------SBCEEEETTTTEEEECCBC--------------------SSCEEEEEECSSSSEEEE-EE-T
T ss_pred EEEEeCC-----------CeEEEEECCCCceEEEecC--------------------CCcEEEEEEcCCCcEEEE-Ec-C
Confidence 8876654 3588899877543211100 012346789999975543 32 3
Q ss_pred CeEEEEEEECCCCcEEE
Q 003363 466 SSQVIISVNVSSGELLR 482 (826)
Q Consensus 466 ~~~~l~~vdl~tg~~~~ 482 (826)
+ .|..+|+.+++...
T Consensus 623 ~--~i~iwd~~~~~~~~ 637 (694)
T 3dm0_A 623 H--GIKIWDLESKSIVE 637 (694)
T ss_dssp T--EEEEEETTTTEEEE
T ss_pred C--CEEEEECCCCCChh
Confidence 3 37777888877554
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-09 Score=118.73 Aligned_cols=274 Identities=11% Similarity=0.044 Sum_probs=157.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCc------eeEEEecCCCccccccCCCcccceeecCC----C--
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQ------LEKEFHVPQTVHGSVYADGWFEGISWNSD----E-- 219 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~------~~~~~~~~~~~~g~v~~~~~~~~~~wSPD----g-- 219 (826)
..+...+|+| +.|+.....+ .+.+| ..++ ....+. ...+.| ..+.|+|| |
T Consensus 17 ~~i~~~~~~~--~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~---~h~~~v------~~~~~~~~~~~~g~~ 80 (397)
T 1sq9_A 17 ADIFSVSACN--SFTVSCSGDG-----YLKVWDNKLLDNENPKDKSYSHF---VHKSGL------HHVDVLQAIERDAFE 80 (397)
T ss_dssp SCEEEEEECS--SEEEEEETTS-----EEEEEESBCCTTCCGGGGEEEEE---CCTTCE------EEEEEEEEEETTTEE
T ss_pred cCeEEEEecC--CeEEEEcCCC-----EEEEEECCCcccccCCCcceEEe---cCCCcE------EEEEEecccccCCcc
Confidence 4588899999 6777665433 45666 2333 222222 122222 78999999 9
Q ss_pred -CeEEEEeecCCCCCCCccCCCCCC-----CCCCccC-----CCCCCcceee----cCCCc-cCCCccCceEEEEEccC-
Q 003363 220 -TLIAYVAEEPSPSKPTFSLGSTKG-----GSSDKDC-----NSWKGQGDWE----EDWGE-TYAGKRQPSLFVININS- 282 (826)
Q Consensus 220 -~~ia~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-----~~~~~~~~~~----~d~g~-~~~~~~~~~l~v~d~~~- 282 (826)
+.|+..+.+.... .|+...... ......+ ........|. ++... .+++.....|++||+.+
T Consensus 81 ~~~l~s~~~dg~i~--iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 158 (397)
T 1sq9_A 81 LCLVATTSFSGDLL--FYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF 158 (397)
T ss_dssp EEEEEEEETTSCEE--EEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESS
T ss_pred ccEEEEEcCCCCEE--EEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcc
Confidence 9998887766433 233211111 1111222 2444567788 77555 56666778999999987
Q ss_pred -----CceE------eccC-----CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEccccc
Q 003363 283 -----GEVQ------AVKG-----IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 346 (826)
Q Consensus 283 -----g~~~------~l~~-----~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 346 (826)
++.. .+.+ ......+..++|+||| . |+..+ .+..|+++|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~----l~~~~---------------~dg~i~i~d~---- 214 (397)
T 1sq9_A 159 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L----IATGF---------------NNGTVQISEL---- 214 (397)
T ss_dssp SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E----EEEEC---------------TTSEEEEEET----
T ss_pred ccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e----EEEEe---------------CCCcEEEEEC----
Confidence 4432 2211 1234457789999999 8 88776 3347889998
Q ss_pred chhhhhhhhcCCCCCCc-ceecCC---C---CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCc
Q 003363 347 SEASELELKESSSEDLP-VVNLTE---S---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 419 (826)
Q Consensus 347 ~~~~~~~~~~~~~~~~~-~~~Lt~---~---~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~ 419 (826)
.+++ ...+.. + ...+....|+|||+.|+..+.+. ....|.+||+.++.....
T Consensus 215 -------------~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~--------~~g~i~i~d~~~~~~~~~ 273 (397)
T 1sq9_A 215 -------------STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN--------SFGCITLYETEFGERIGS 273 (397)
T ss_dssp -------------TTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET--------TEEEEEEEETTTCCEEEE
T ss_pred -------------CCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC--------CCceEEEEECCCCcccce
Confidence 4343 344444 4 66788999999999988776541 124699999887543211
Q ss_pred ccceeeeeeeeeccCCCCCcc-cccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecC------C------
Q 003363 420 LEKIVDVIPVVQCAEGDCFPG-LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP------A------ 486 (826)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~f~g-~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~------~------ 486 (826)
..... .+....... .....+..+.|+|||+.|+. ...++ .|..+|+.+++...... .
T Consensus 274 ~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 343 (397)
T 1sq9_A 274 LSVPT-------HSSQASLGEFAHSSWVMSLSFNDSGETLCS-AGWDG--KLRFWDVKTKERITTLNMHCDDIEIEEDIL 343 (397)
T ss_dssp ECBC---------------CCBSBSSCEEEEEECSSSSEEEE-EETTS--EEEEEETTTTEEEEEEECCGGGCSSGGGCC
T ss_pred eccCc-------ccccccccccccCCcEEEEEECCCCCEEEE-EeCCC--eEEEEEcCCCceeEEEecccCcccchhhhh
Confidence 11100 000000000 01123457789999996654 33333 56667888877655443 2
Q ss_pred ----------CCCeeeEEEeecCC
Q 003363 487 ----------ESNFSWSLLTLDGD 500 (826)
Q Consensus 487 ----------~~~~~~~~~s~dg~ 500 (826)
...+....|+++++
T Consensus 344 ~g~~~~~~~~~~~v~~~~~~~~g~ 367 (397)
T 1sq9_A 344 AVDEHGDSLAEPGVFDVKFLKKGW 367 (397)
T ss_dssp CBCTTSCBCSSCCEEEEEEECTTT
T ss_pred ccccccccccCCceeEEEeccccc
Confidence 34456668888873
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.11 E-value=8.9e-09 Score=107.88 Aligned_cols=245 Identities=11% Similarity=0.107 Sum_probs=140.7
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCC-ccceeecCCcceecccEEEEeCCC--CCeEEEEecCCCCCCe
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENEN-SVTFQWAPFPVEMTGASAVVPSPS--GSKLLVVRNPENESPI 180 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~-~~~lt~~~~~~~~~~~~~~~~SPd--G~~la~~~~~~~~~~~ 180 (826)
++|||++++-.. ....+.++++.....+ ...|.... ..+...+|+|+ |+.||..+.++
T Consensus 17 ~s~~g~~las~s---------~D~~v~iw~~~~~~~~~~~~l~gH~-----~~V~~v~~s~~~~g~~l~s~s~D~----- 77 (297)
T 2pm7_B 17 MDYYGKRMATCS---------SDKTIKIFEVEGETHKLIDTLTGHE-----GPVWRVDWAHPKFGTILASCSYDG----- 77 (297)
T ss_dssp ECTTSSEEEEEE---------TTSCEEEEEBCSSCBCCCEEECCCS-----SCEEEEEECCGGGCSEEEEEETTT-----
T ss_pred ECCCCCEEEEEe---------CCCEEEEEecCCCCcEEEEEEcccc-----CCeEEEEecCCCcCCEEEEEcCCC-----
Confidence 479999876432 2345666666433222 22333332 45889999974 88888776543
Q ss_pred EEEEec--CCceeEEEecCCCccccccCCCcccceeecCC--CCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCc
Q 003363 181 QFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ 256 (826)
Q Consensus 181 ~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPD--g~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (826)
.+.+|+ .++...+.... ...+.| ..++|+|| |+.|+..+.+
T Consensus 78 ~v~iWd~~~~~~~~~~~~~-~h~~~v------~~v~~~p~~~g~~l~s~s~d---------------------------- 122 (297)
T 2pm7_B 78 KVMIWKEENGRWSQIAVHA-VHSASV------NSVQWAPHEYGPMLLVASSD---------------------------- 122 (297)
T ss_dssp EEEEEEBSSSCBCCCEEEC-CCSSCE------EEEEECCGGGCSEEEEEETT----------------------------
T ss_pred EEEEEEcCCCceEEEEEee-cCCCce------eEEEeCcCCCCcEEEEEECC----------------------------
Confidence 567773 23222221111 112222 78999998 8888776433
Q ss_pred ceeecCCCccCCCccCceEEEEEccCCc---eEeccCCCCCCccceEEEeeCC-------------CCCccEEEEEeecC
Q 003363 257 GDWEEDWGETYAGKRQPSLFVININSGE---VQAVKGIPKSLSVGQVVWAPLN-------------EGLHQYLVFVGWSS 320 (826)
Q Consensus 257 ~~~~~d~g~~~~~~~~~~l~v~d~~~g~---~~~l~~~~~~~~~~~~~wSPDg-------------~~~~~~lvf~~~~~ 320 (826)
..|.+||+.++. ...+ ......+..++|+|++ +. |+..+
T Consensus 123 ----------------~~v~~wd~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~----l~sgs--- 177 (297)
T 2pm7_B 123 ----------------GKVSVVEFKENGTTSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRK----FVTGG--- 177 (297)
T ss_dssp ----------------SEEEEEEBCSSSCBCCEEE--ECCSSCEEEEEECCCC------------CCE----EEEEE---
T ss_pred ----------------CcEEEEEecCCCceeeeee--ecccCccceEeecCCcccccccCCCCCCcce----EEEEc---
Confidence 568888887653 2223 2334467788999984 33 54444
Q ss_pred cceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCC----cceecCCCCccccCceecCCC---CEEEEEeccC
Q 003363 321 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL----PVVNLTESISSAFFPRFSPDG---KFLVFLSAKS 393 (826)
Q Consensus 321 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~----~~~~Lt~~~~~~~~p~~SpDG---~~l~f~s~~~ 393 (826)
.+..|.++|+. ... ....+..+...+...+||||| ++|+..+.+
T Consensus 178 ------------~D~~v~lwd~~----------------~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D- 228 (297)
T 2pm7_B 178 ------------ADNLVKIWKYN----------------SDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD- 228 (297)
T ss_dssp ------------TTSCEEEEEEE----------------TTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT-
T ss_pred ------------CCCcEEEEEEc----------------CCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECC-
Confidence 23357777762 111 234566677788999999996 666655544
Q ss_pred CCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003363 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (826)
Q Consensus 394 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~v 473 (826)
..|.+||+.++..... ..+... .. +...+..++|+|||+.| ++...++...||..
T Consensus 229 ----------~~v~iWd~~~~~~~~~-------~~~~~~---~~----~~~~v~~~~~s~~g~~l-as~~~D~~v~lw~~ 283 (297)
T 2pm7_B 229 ----------RTCIIWTQDNEQGPWK-------KTLLKE---EK----FPDVLWRASWSLSGNVL-ALSGGDNKVTLWKE 283 (297)
T ss_dssp ----------SCEEEEEESSTTSCCE-------EEESSS---SC----CSSCEEEEEECSSSCCE-EEEETTSCEEEEEE
T ss_pred ----------CcEEEEEeCCCCCccc-------eeeeec---cc----CCCcEEEEEECCCCCEE-EEEcCCCcEEEEEE
Confidence 3477888765321100 000000 00 11234467899999865 45556777888877
Q ss_pred ECCCCcEEE
Q 003363 474 NVSSGELLR 482 (826)
Q Consensus 474 dl~tg~~~~ 482 (826)
+.. |+...
T Consensus 284 ~~~-g~w~~ 291 (297)
T 2pm7_B 284 NLE-GKWEP 291 (297)
T ss_dssp CTT-SCEEE
T ss_pred CCC-CcEEe
Confidence 653 44443
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.11 E-value=3.1e-09 Score=113.32 Aligned_cols=247 Identities=10% Similarity=0.046 Sum_probs=144.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCc----eeEEEecCCCccccccCCCcccceeecCCCC-eEEEEe
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQ----LEKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVA 226 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~----~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~-~ia~~~ 226 (826)
..+...+|||||+.|+.....+ .+.+| ..+. ........ +.| ..+.|+|||+ .|+..+
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~-----~v~iw~~~~~~~~~~~~~~~~~~----~~v------~~~~~~~~~~~~l~~~~ 76 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDG-----SLTVYKFDIQAKNVDLLQSLRYK----HPL------LCCNFIDNTDLQIYVGT 76 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTS-----EEEEEEEETTTTEEEEEEEEECS----SCE------EEEEEEESSSEEEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEcCCC-----eEEEEEeCCCCccccceeeeecC----Cce------EEEEECCCCCcEEEEEc
Confidence 3588999999999998876543 34455 2333 22222222 222 7999999999 888764
Q ss_pred ecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEc-cCCceEeccCCCCCCccceEEEeeC
Q 003363 227 EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI-NSGEVQAVKGIPKSLSVGQVVWAPL 305 (826)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~-~~g~~~~l~~~~~~~~~~~~~wSPD 305 (826)
.+ ..|++||+ .+++...+.+......+..+.|+|
T Consensus 77 ~d--------------------------------------------g~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~- 111 (342)
T 1yfq_A 77 VQ--------------------------------------------GEILKVDLIGSPSFQALTNNEANLGICRICKYG- 111 (342)
T ss_dssp TT--------------------------------------------SCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-
T ss_pred CC--------------------------------------------CeEEEEEeccCCceEeccccCCCCceEEEEeCC-
Confidence 32 56999999 999887773211555778999999
Q ss_pred CCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCE
Q 003363 306 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF 385 (826)
Q Consensus 306 g~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~ 385 (826)
++. |+..+ .+..|+.+|+....... ....++..........+....|+|++
T Consensus 112 ~~~----l~s~~---------------~d~~i~iwd~~~~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~-- 162 (342)
T 1yfq_A 112 DDK----LIAAS---------------WDGLIEVIDPRNYGDGV--------IAVKNLNSNNTKVKNKIFTMDTNSSR-- 162 (342)
T ss_dssp TTE----EEEEE---------------TTSEEEEECHHHHTTBC--------EEEEESCSSSSSSCCCEEEEEECSSE--
T ss_pred CCE----EEEEc---------------CCCeEEEEccccccccc--------ccccCCeeeEEeeCCceEEEEecCCc--
Confidence 776 66555 23478888872100000 00002222222255667888999998
Q ss_pred EEEEeccCCCCCCCCcccceEEEEeCCC-CCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCcccc-CCCEEEEEEE
Q 003363 386 LVFLSAKSSVDSGAHSATDSLHRIDWPT-NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS-DGCTMLLSSI 463 (826)
Q Consensus 386 l~f~s~~~~~~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~-Dg~~l~~~~~ 463 (826)
|+..+.+ ..|++||+.+ +........ .. ....+..+.|+| |++.++ +..
T Consensus 163 l~~~~~d-----------~~i~i~d~~~~~~~~~~~~~---------~~--------~~~~i~~i~~~~~~~~~l~-~~~ 213 (342)
T 1yfq_A 163 LIVGMNN-----------SQVQWFRLPLCEDDNGTIEE---------SG--------LKYQIRDVALLPKEQEGYA-CSS 213 (342)
T ss_dssp EEEEEST-----------TEEEEEESSCCTTCCCEEEE---------CS--------CSSCEEEEEECSGGGCEEE-EEE
T ss_pred EEEEeCC-----------CeEEEEECCccccccceeee---------cC--------CCCceeEEEECCCCCCEEE-EEe
Confidence 5444332 4699999877 432110000 00 011234678999 998654 445
Q ss_pred eCCeEEEEEEECC-----CCcEEEecCCCC---------CeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003363 464 WGSSQVIISVNVS-----SGELLRITPAES---------NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (826)
Q Consensus 464 ~~~~~~l~~vdl~-----tg~~~~lt~~~~---------~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 522 (826)
.++...+|.++.. ......+..... .+....|+++++.++....+ . .|.+.++..
T Consensus 214 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g---~i~vwd~~~ 282 (342)
T 1yfq_A 214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD-G---IISCWNLQT 282 (342)
T ss_dssp TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT-S---CEEEEETTT
T ss_pred cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC-c---eEEEEcCcc
Confidence 5666677766654 133344433322 45556788888866544432 2 367777643
|
| >2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase; HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A* 1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A* 2hrq_A* 3k9b_A* 1k4y_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=4.1e-11 Score=135.97 Aligned_cols=129 Identities=25% Similarity=0.289 Sum_probs=92.5
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCcc-chHHHHHHHHCCcEEEEECCC-CCCCCchhhhhcCCCCCCcchHH
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YSKSLAFLSSVGYSLLIVNYR-GSLGFGEEALQSLPGKVGSQDVN 653 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~-~~~~~~~la~~G~~Vl~~d~r-G~~g~G~~~~~~~~~~~~~~~~~ 653 (826)
+...+|.|.+....++.|+||++|||++...... +.. ..+..+.|++|+.+||| |..|++....... .+...+.
T Consensus 99 l~lnv~~P~~~~~~~~~Pv~v~iHGG~~~~g~~~~~~~-~~la~~~g~vvv~~nYRlg~~gf~~~~~~~~---~~n~gl~ 174 (542)
T 2h7c_A 99 LYLNIYTPADLTKKNRLPVMVWIHGGGLMVGAASTYDG-LALAAHENVVVVTIQYRLGIWGFFSTGDEHS---RGNWGHL 174 (542)
T ss_dssp CEEEEEECSCTTSCCCEEEEEEECCSTTTSCCSTTSCC-HHHHHHHTCEEEEECCCCHHHHHCCCSSTTC---CCCHHHH
T ss_pred cEEEEEECCCCCCCCCCCEEEEECCCcccCCCccccCH-HHHHhcCCEEEEecCCCCccccCCCCCcccC---ccchhHH
Confidence 4446888976544578999999999887654432 322 22334589999999999 4333332221112 2334578
Q ss_pred HHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHh--CCCceeEEEecCCccch
Q 003363 654 DVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCNL 708 (826)
Q Consensus 654 D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~~~~ 708 (826)
|+.++++|+.++ ...|+++|.|+|+|+||+++..++.. .+.+|+++|+.+|....
T Consensus 175 D~~~al~wv~~ni~~fggDp~~Vtl~G~SaGg~~~~~~~~~~~~~~lf~~ai~~Sg~~~~ 234 (542)
T 2h7c_A 175 DQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVALT 234 (542)
T ss_dssp HHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTTC
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEEechHHHHHHHHHhhhhhhHHHHHHhhhcCCccC
Confidence 999999999885 34799999999999999999988875 35799999999987643
|
| >1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A {Galactomyces geotrichum} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.11 E-value=2e-11 Score=138.37 Aligned_cols=221 Identities=15% Similarity=0.097 Sum_probs=125.5
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCcc-ch--HHHH-HHH-HCCcEEEEECCCCCCCCch----hhhhcCCCC
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YS--KSLA-FLS-SVGYSLLIVNYRGSLGFGE----EALQSLPGK 646 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~-~~--~~~~-~la-~~G~~Vl~~d~rG~~g~G~----~~~~~~~~~ 646 (826)
+...+|.|.+....++.|+||++|||++...... +. ..+. .++ ..|++|+.+|||... +|- ......
T Consensus 106 l~l~v~~P~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~l~~~~l~~~~~~vvv~~nYRl~~-~gf~~~~~~~~~~--- 181 (544)
T 1thg_A 106 LYLNVFRPAGTKPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGP-FGFLGGDAITAEG--- 181 (544)
T ss_dssp CEEEEEEETTCCTTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHH-HHHCCSHHHHHHT---
T ss_pred eEEEEEeCCCCCCCCCCcEEEEECCCccccCCccccCchHHHHHHhhcCCCEEEEeCCCCCCc-ccCCCcccccccC---
Confidence 4456788875444578999999999987654432 21 1222 222 358999999999743 111 100111
Q ss_pred CCcchHHHHHHHHHHHHHcC---CCCCCcEEEEEecchHHHHHHHHHhC--------CCceeEEEecCCccchhhhccCC
Q 003363 647 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPLCNLALMVGTT 715 (826)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~~~p~~~~~~~~~~~ 715 (826)
.+...+.|+.++++|+.++. ..|++||.|+|+|+||.+++.++... ..+|+++|+.+|...........
T Consensus 182 ~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~~~~~~~~~~~~~~~lf~~~i~~Sg~~~~~~~~~~~ 261 (544)
T 1thg_A 182 NTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGGPLPYHDSSSV 261 (544)
T ss_dssp CTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCCCCCCSSSCCS
T ss_pred CCchhHHHHHHHHHHHHHHHHHhCCChhHeEEEEECHHHHHHHHHHhCCCccccccccccccceEEecccccccCcCChH
Confidence 23345899999999998862 47999999999999999998777652 45899999999853211111100
Q ss_pred CCC-Cc-hhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCC-----------CCCcEEEEEeCCCCCCCcHHHHHHH
Q 003363 716 DIP-DW-CYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK-----------VKTPTIFLLGAQDLRVPVSNGLQYA 782 (826)
Q Consensus 716 ~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~-----------i~~PvLii~G~~D~~vp~~~~~~~~ 782 (826)
... .+ .+....+... .....+..+.++..++...+.. .....+.+....|..+.+.+..++.
T Consensus 262 ~~~~~~~~~~~~~gc~~-----~~~~~~~~~cLr~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~P~~Dg~~l~~~p~~~~ 336 (544)
T 1thg_A 262 GPDISYNRFAQYAGCDT-----SASANDTLECLRSKSSSVLHDAQNSYDLKDLFGLLPQFLGFGPRPDGNIIPDAAYELF 336 (544)
T ss_dssp SSSCHHHHHHHHHTCCT-----TSCHHHHHHHHHHSCHHHHHHHHHHHHHHHSTTTSCGGGTSCCCCCSSSSCSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCC-----CCCcHHHHHHHhcCCHHHHHHhhhhcccccccccccccccceeeeCCcccCcCHHHHH
Confidence 000 11 1112222210 0000022233333322111100 0000011233445556666667776
Q ss_pred HHHHhCCCCEEEEEeCCCCCCCC
Q 003363 783 RALREKGVETKVIVFPNDVHGIE 805 (826)
Q Consensus 783 ~~l~~~g~~~~~~~~p~~~H~~~ 805 (826)
+..+..++++.+-...++||.+.
T Consensus 337 ~~g~~~~vp~l~G~~~~Eg~~f~ 359 (544)
T 1thg_A 337 RSGRYAKVPYISGNQEDEGTAFA 359 (544)
T ss_dssp HTTCSCCCCEEEEEETBTTTTTG
T ss_pred hcCCCCCccEEEEeecCchhhhc
Confidence 66666678888888888898764
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.7e-09 Score=125.52 Aligned_cols=240 Identities=10% Similarity=0.046 Sum_probs=147.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCC----ceeEEEecCCCcccc-ccCCCcccceeecC--CCCeEEE
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQS----QLEKEFHVPQTVHGS-VYADGWFEGISWNS--DETLIAY 224 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~----~~~~~~~~~~~~~g~-v~~~~~~~~~~wSP--Dg~~ia~ 224 (826)
..+...+|||||++||+..+. .+.+| ..+ +..+.+. +..+. | ..++||| ||+.||.
T Consensus 19 ~~v~~~~~spdg~~l~~~~~~------~v~v~~~~~~~~~~~~~~~~~---~h~~~~v------~~~~~sp~~~~~~l~s 83 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPCGK------SAFVRCLDDGDSKVPPVVQFT---GHGSSVV------TTVKFSPIKGSQYLCS 83 (615)
T ss_dssp TCCCCCEEETTTTEEEEEETT------EEEEEECCSSCCSSCSEEEEC---TTTTSCE------EEEEECSSTTCCEEEE
T ss_pred CceeEEEECCCCCEEEEecCC------eEEEEECCCCCCccccceEEe---cCCCceE------EEEEECcCCCCCEEEE
Confidence 458889999999999998632 35566 233 2333322 22222 3 7899999 9999988
Q ss_pred EeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCC------ceEeccC-CCCCCcc
Q 003363 225 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG------EVQAVKG-IPKSLSV 297 (826)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g------~~~~l~~-~~~~~~~ 297 (826)
.+.+ ..|.+||+.++ +.+.+.. ......+
T Consensus 84 ~~~d--------------------------------------------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v 119 (615)
T 1pgu_A 84 GDES--------------------------------------------GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPI 119 (615)
T ss_dssp EETT--------------------------------------------SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCE
T ss_pred ecCC--------------------------------------------CEEEEEeCCCCcccccccccccchhhcccccE
Confidence 6442 56889998655 2222210 2234467
Q ss_pred ceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCc
Q 003363 298 GQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFP 377 (826)
Q Consensus 298 ~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p 377 (826)
..++|+|||+. |+..+...+ ....|+.+|. +.....+..+...+...
T Consensus 120 ~~~~~s~~~~~----l~~~~~~~~-----------~~~~v~~~d~------------------~~~~~~~~~~~~~v~~~ 166 (615)
T 1pgu_A 120 SDISWDFEGRR----LCVVGEGRD-----------NFGVFISWDS------------------GNSLGEVSGHSQRINAC 166 (615)
T ss_dssp EEEEECTTSSE----EEEEECCSS-----------CSEEEEETTT------------------CCEEEECCSCSSCEEEE
T ss_pred EEEEEeCCCCE----EEEeccCCC-----------CccEEEEEEC------------------CCcceeeecCCccEEEE
Confidence 88999999998 887763221 1235666663 33456667777788899
Q ss_pred eecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccC---CCCCCccccC
Q 003363 378 RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS---SILSNPWLSD 454 (826)
Q Consensus 378 ~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~---~~~~~~ws~D 454 (826)
.|+|||+.+++....+ ..|.+||+.+++.... +.. +.. .+..+.|+||
T Consensus 167 ~~~~~~~~~l~~~~~d----------~~v~vwd~~~~~~~~~----------~~~---------~~~~~~~v~~~~~~~~ 217 (615)
T 1pgu_A 167 HLKQSRPMRSMTVGDD----------GSVVFYQGPPFKFSAS----------DRT---------HHKQGSFVRDVEFSPD 217 (615)
T ss_dssp EECSSSSCEEEEEETT----------TEEEEEETTTBEEEEE----------ECS---------SSCTTCCEEEEEECST
T ss_pred EECCCCCcEEEEEeCC----------CcEEEEeCCCcceeee----------ecc---------cCCCCceEEEEEECCC
Confidence 9999999544444332 4688999776443111 100 011 2346789999
Q ss_pred -CCEEEEEEEeCCeEEEEEEECCCCcEEEec-----CCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003363 455 -GCTMLLSSIWGSSQVIISVNVSSGELLRIT-----PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (826)
Q Consensus 455 -g~~l~~~~~~~~~~~l~~vdl~tg~~~~lt-----~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 522 (826)
|+.|+.. ..++ .|..+|+.+++..... .....+....|+ +++.++....+ ..+.+.++..
T Consensus 218 ~~~~l~~~-~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d----~~i~~wd~~~ 283 (615)
T 1pgu_A 218 SGEFVITV-GSDR--KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD----ATIRVWDVTT 283 (615)
T ss_dssp TCCEEEEE-ETTC--CEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT----SEEEEEETTT
T ss_pred CCCEEEEE-eCCC--eEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCC----CcEEEEECCC
Confidence 8866544 3333 5666788888766554 333445556777 77766655433 3366666543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.2e-09 Score=113.88 Aligned_cols=243 Identities=12% Similarity=0.107 Sum_probs=142.1
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCc-cceeecCCcceecccEEEEeCCC--CCeEEEEecCCCCCC
Q 003363 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENS-VTFQWAPFPVEMTGASAVVPSPS--GSKLLVVRNPENESP 179 (826)
Q Consensus 103 ~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~-~~lt~~~~~~~~~~~~~~~~SPd--G~~la~~~~~~~~~~ 179 (826)
.++|||+.++... ....+.++++....... ..+.... ..+...+|+|+ |++|+.....+
T Consensus 18 ~~s~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~~~dg---- 79 (379)
T 3jrp_A 18 VLDYYGKRLATCS---------SDKTIKIFEVEGETHKLIDTLTGHE-----GPVWRVDWAHPKFGTILASCSYDG---- 79 (379)
T ss_dssp EECSSSSEEEEEE---------TTSCEEEEEEETTEEEEEEEECCCS-----SCEEEEEECCGGGCSEEEEEETTS----
T ss_pred EEcCCCCEEEEEE---------CCCcEEEEecCCCcceeeeEecCCC-----CcEEEEEeCCCCCCCEEEEeccCC----
Confidence 3489999887542 12345555554322221 2232222 45889999988 89888776543
Q ss_pred eEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCC--CCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCC
Q 003363 180 IQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 255 (826)
Q Consensus 180 ~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPD--g~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (826)
.+.+| ..++...+.... ...+.| ..+.|+|+ ++.|+..+.+
T Consensus 80 -~v~iwd~~~~~~~~~~~~~-~~~~~v------~~~~~~~~~~~~~l~~~~~d--------------------------- 124 (379)
T 3jrp_A 80 -KVLIWKEENGRWSQIAVHA-VHSASV------NSVQWAPHEYGPLLLVASSD--------------------------- 124 (379)
T ss_dssp -CEEEEEEETTEEEEEEEEC-CCSSCE------EEEEECCGGGCSEEEEEETT---------------------------
T ss_pred -EEEEEEcCCCceeEeeeec-CCCcce------EEEEeCCCCCCCEEEEecCC---------------------------
Confidence 34555 233322222221 222223 79999999 8888886443
Q ss_pred cceeecCCCccCCCccCceEEEEEccCCce---EeccCCCCCCccceEEEee-------------CCCCCccEEEEEeec
Q 003363 256 QGDWEEDWGETYAGKRQPSLFVININSGEV---QAVKGIPKSLSVGQVVWAP-------------LNEGLHQYLVFVGWS 319 (826)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~---~~l~~~~~~~~~~~~~wSP-------------Dg~~~~~~lvf~~~~ 319 (826)
..|.+||+.++.. ..+ ......+..++|+| |++. |+..+
T Consensus 125 -----------------~~i~v~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~-- 179 (379)
T 3jrp_A 125 -----------------GKVSVVEFKENGTTSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRK----FVTGG-- 179 (379)
T ss_dssp -----------------SEEEEEECCTTSCCCEEEE--ECCTTCEEEEEECCCC----------CTTCE----EEEEE--
T ss_pred -----------------CcEEEEecCCCCceeeEEe--cCCCCceEEEEEcCccccccccccCCCCCCE----EEEEe--
Confidence 5788999887632 223 23344677899999 5776 66555
Q ss_pred CcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCC-CcceecCCCCccccCceecCC---CCEEEEEeccCCC
Q 003363 320 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVNLTESISSAFFPRFSPD---GKFLVFLSAKSSV 395 (826)
Q Consensus 320 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~Lt~~~~~~~~p~~SpD---G~~l~f~s~~~~~ 395 (826)
.+..|+++|+.... .. .....+..+...+..+.|+|| |++|+..+.+
T Consensus 180 -------------~dg~i~i~d~~~~~-------------~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d--- 230 (379)
T 3jrp_A 180 -------------ADNLVKIWKYNSDA-------------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD--- 230 (379)
T ss_dssp -------------TTSCEEEEEEETTT-------------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT---
T ss_pred -------------CCCeEEEEEecCCC-------------cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC---
Confidence 23367788872100 00 112355566777889999999 7877766644
Q ss_pred CCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003363 396 DSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (826)
Q Consensus 396 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl 475 (826)
..|.+||+.++..... ..+... .. +...+..+.|+|||+.|+. ...++...+|.++.
T Consensus 231 --------g~i~iwd~~~~~~~~~-------~~~~~~---~~----~~~~v~~~~~s~~g~~l~~-~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 231 --------RTCIIWTQDNEQGPWK-------KTLLKE---EK----FPDVLWRASWSLSGNVLAL-SGGDNKVTLWKENL 287 (379)
T ss_dssp --------SCEEEEEESSTTSCCE-------EEESSS---SC----CSSCEEEEEECSSSCCEEE-EESSSSEEEEEEEE
T ss_pred --------CEEEEEeCCCCCccce-------eeeecc---cc----CCCcEEEEEEcCCCCEEEE-ecCCCcEEEEeCCC
Confidence 3488888877542110 000000 00 1113446789999996654 44567777887764
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=7.6e-08 Score=105.07 Aligned_cols=259 Identities=13% Similarity=0.078 Sum_probs=143.4
Q ss_pred cccEEEEeCC-CCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCC---eEEEEee
Q 003363 154 TGASAVVPSP-SGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDET---LIAYVAE 227 (826)
Q Consensus 154 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~---~ia~~~~ 227 (826)
..+...+|+| +++.|+.....+ .+.+| ..++........... ..+.|+|++. .|+....
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 164 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDK-----TLKVWDTNTLQTADVFNFEETV----------YSHHMSPVSTKHCLVAVGTR 164 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTS-----EEEEEETTTTEEEEEEECSSCE----------EEEEECSSCSSCCEEEEEES
T ss_pred CcEEEEEEccCCCcEEEEEeCCC-----eEEEeeCCCCccceeccCCCce----------eeeEeecCCCCCcEEEEEcC
Confidence 4688999999 667777665433 56677 344444444433333 6778888544 6665432
Q ss_pred cCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCC
Q 003363 228 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 307 (826)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~ 307 (826)
...|.+||+.+++..... ......+..++|+|+++
T Consensus 165 --------------------------------------------~~~v~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~ 199 (408)
T 4a11_B 165 --------------------------------------------GPKVQLCDLKSGSCSHIL-QGHRQEILAVSWSPRYD 199 (408)
T ss_dssp --------------------------------------------SSSEEEEESSSSCCCEEE-CCCCSCEEEEEECSSCT
T ss_pred --------------------------------------------CCeEEEEeCCCcceeeee-cCCCCcEEEEEECCCCC
Confidence 257999999887644331 33445678899999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEE
Q 003363 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 387 (826)
Q Consensus 308 ~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~ 387 (826)
. +++++. .+..|+.+|+......-........+........+..+...+....|+|||++|+
T Consensus 200 ~----ll~~~~--------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 261 (408)
T 4a11_B 200 Y----ILATAS--------------ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL 261 (408)
T ss_dssp T----EEEEEE--------------TTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEE
T ss_pred c----EEEEEc--------------CCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEE
Confidence 8 777663 2336778887311000000000000000001112234556678899999999988
Q ss_pred EEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccc-cCCCEEEEEEEeCC
Q 003363 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL-SDGCTMLLSSIWGS 466 (826)
Q Consensus 388 f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws-~Dg~~l~~~~~~~~ 466 (826)
..+.+ ..|.+||+.++........... . ... ......+. ..+..+++. ..++
T Consensus 262 ~~~~d-----------g~i~vwd~~~~~~~~~~~~~~~--~-------~~~------~~~~~~~~~~~~~~~~~~-~~~~ 314 (408)
T 4a11_B 262 TVGTD-----------NRMRLWNSSNGENTLVNYGKVC--N-------NSK------KGLKFTVSCGCSSEFVFV-PYGS 314 (408)
T ss_dssp EEETT-----------SCEEEEETTTCCBCCCCCCCCC--C-------CCS------SCCCCEECCSSSSCEEEE-EETT
T ss_pred EecCC-----------CeEEEEECCCCccceecccccc--c-------ccc------ccceeEEecCCCceEEEE-ecCC
Confidence 77654 3589999988665322211100 0 000 00111222 223334444 3333
Q ss_pred eEEEEEEECCCCcEEEecC-CCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 467 SQVIISVNVSSGELLRITP-AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 467 ~~~l~~vdl~tg~~~~lt~-~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
.+..+|+.+++...... ....+....|++++..|+....+ . .|.+.++...
T Consensus 315 --~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g---~i~iw~~~~~ 366 (408)
T 4a11_B 315 --TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRD-C---NILAWVPSLY 366 (408)
T ss_dssp --EEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETT-S---CEEEEEECC-
T ss_pred --EEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCC-C---eEEEEeCCCC
Confidence 56777888887665544 33456667899998876644432 2 3666665543
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.11 E-value=6.9e-09 Score=108.91 Aligned_cols=273 Identities=14% Similarity=0.088 Sum_probs=157.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
..+...+| |||++|+.....+ .+.+|+ .+......... .+. +..+.|+||++.|+..+.+...
T Consensus 19 ~~v~~~~~-~~~~~l~s~~~dg-----~v~vw~~~~~~~~~~~~~~---~~~------v~~~~~~~~~~~l~~~~~dg~i 83 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVSRDG-----TVRLWSKDDQWLGTVVYTG---QGF------LNSVCYDSEKELLLFGGKDTMI 83 (313)
T ss_dssp SCEEEEEE-EETTEEEEEETTS-----EEEEEEESSSEEEEEEEEC---SSC------EEEEEEETTTTEEEEEETTSCE
T ss_pred CCcEEEEe-cCCCEEEEEEcCC-----cEEEEECCCCEEEEEeecC---Ccc------EEEEEECCCCCEEEEecCCCeE
Confidence 45788899 9999998876543 566663 33333333221 222 2799999999999998876643
Q ss_pred CCCCcc-CCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEee-CCCCC
Q 003363 232 SKPTFS-LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP-LNEGL 309 (826)
Q Consensus 232 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSP-Dg~~~ 309 (826)
..+... ............+........|. ....+++.....|.+|| .......+ ......+..+.|+| +++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~~~d-~~~~~~~~--~~~~~~v~~~~~~~~~~~~- 157 (313)
T 3odt_A 84 NGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DGVVISGSWDKTAKVWK-EGSLVYNL--QAHNASVWDAKVVSFSENK- 157 (313)
T ss_dssp EEEETTCCTTSCC-CEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE-TTEEEEEE--ECCSSCEEEEEEEETTTTE-
T ss_pred EEEEeeecCCCCcccchhhcccCEEEEEec--CCEEEEEeCCCCEEEEc-CCcEEEec--ccCCCceeEEEEccCCCCE-
Confidence 211111 11111111222333333344453 23445555678899999 33334444 33445677889999 7776
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCC-CCccccCceecCCCCEEEE
Q 003363 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVF 388 (826)
Q Consensus 310 ~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~l~f 388 (826)
|+..+ .+..|+.+|. . .....+.. +...+....|+|+|+ |+.
T Consensus 158 ---l~~~~---------------~d~~i~i~d~-----------------~-~~~~~~~~~~~~~i~~~~~~~~~~-~~~ 200 (313)
T 3odt_A 158 ---FLTAS---------------ADKTIKLWQN-----------------D-KVIKTFSGIHNDVVRHLAVVDDGH-FIS 200 (313)
T ss_dssp ---EEEEE---------------TTSCEEEEET-----------------T-EEEEEECSSCSSCEEEEEEEETTE-EEE
T ss_pred ---EEEEE---------------CCCCEEEEec-----------------C-ceEEEEeccCcccEEEEEEcCCCe-EEE
Confidence 66554 2346778874 2 23334443 566688899999998 554
Q ss_pred EeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeE
Q 003363 389 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 468 (826)
Q Consensus 389 ~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~ 468 (826)
.+.+ ..|++||+.+++....... ....+..+.|+|||+ |+ +...+ .
T Consensus 201 ~~~d-----------g~i~i~d~~~~~~~~~~~~-------------------~~~~i~~~~~~~~~~-l~-~~~~d--g 246 (313)
T 3odt_A 201 CSND-----------GLIKLVDMHTGDVLRTYEG-------------------HESFVYCIKLLPNGD-IV-SCGED--R 246 (313)
T ss_dssp EETT-----------SEEEEEETTTCCEEEEEEC-------------------CSSCEEEEEECTTSC-EE-EEETT--S
T ss_pred ccCC-----------CeEEEEECCchhhhhhhhc-------------------CCceEEEEEEecCCC-EE-EEecC--C
Confidence 4433 4699999887553211100 111344678999994 43 33333 4
Q ss_pred EEEEEECCCCcEEEec-CCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 469 VIISVNVSSGELLRIT-PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 469 ~l~~vdl~tg~~~~lt-~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
.|..+|+.+++..... .....+....|++++. ++. .+... .|.+.++...
T Consensus 247 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~-~~~dg---~i~iw~~~~~ 297 (313)
T 3odt_A 247 TVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIV-GSSDN---LVRIFSQEKS 297 (313)
T ss_dssp EEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEE-EETTS---CEEEEESCGG
T ss_pred EEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEE-EeCCC---cEEEEeCCCC
Confidence 5666788888765544 3333566667888887 333 33322 3667676543
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-09 Score=118.97 Aligned_cols=156 Identities=10% Similarity=0.082 Sum_probs=96.6
Q ss_pred ccceeecCCCCeEEEEeecCCCCCCCccCCC-CCC-------CCCCccCCCCCCcceeecCC-CccCCCccCceEEEEEc
Q 003363 210 FEGISWNSDETLIAYVAEEPSPSKPTFSLGS-TKG-------GSSDKDCNSWKGQGDWEEDW-GETYAGKRQPSLFVINI 280 (826)
Q Consensus 210 ~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~d~-g~~~~~~~~~~l~v~d~ 280 (826)
+..++|+|||+.|+.. .+.... .|+... ... ......+........|.++. ...+++.....|.+||+
T Consensus 180 v~~~~~~~~~~~l~s~-~d~~i~--iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 256 (447)
T 3dw8_B 180 INSISINSDYETYLSA-DDLRIN--LWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM 256 (447)
T ss_dssp CCEEEECTTSSEEEEE-CSSEEE--EEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred eEEEEEcCCCCEEEEe-CCCeEE--EEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence 3799999999999876 444322 333210 000 01233455556677888885 34455666789999999
Q ss_pred cCCce-----EeccCCCCCC------------ccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcc
Q 003363 281 NSGEV-----QAVKGIPKSL------------SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVS 343 (826)
Q Consensus 281 ~~g~~-----~~l~~~~~~~------------~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 343 (826)
.+++. ..+. .... .+..++|+|||+. |+..+ . ..|.++|+.
T Consensus 257 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~~----l~~~~---------------~-~~v~iwd~~ 314 (447)
T 3dw8_B 257 RASALCDRHSKLFE--EPEDPSNRSFFSEIISSISDVKFSHSGRY----MMTRD---------------Y-LSVKVWDLN 314 (447)
T ss_dssp TTCSSSCTTCEEEC--CC-----CCHHHHHTTCEEEEEECTTSSE----EEEEE---------------S-SEEEEEETT
T ss_pred cCCccccceeeEec--cCCCccccccccccCceEEEEEECCCCCE----EEEee---------------C-CeEEEEeCC
Confidence 98874 4442 2221 6778999999997 77554 2 378888872
Q ss_pred cccchhhhhhhhcCCCCCCcceecCCCCcc---------------ccCceecCCCCEEEEEeccCCCCCCCCcccceEEE
Q 003363 344 LYKSEASELELKESSSEDLPVVNLTESISS---------------AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR 408 (826)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~---------------~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~ 408 (826)
. .......+..+... .....|||||++|+..+.+ ..|++
T Consensus 315 ~---------------~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~d-----------g~v~i 368 (447)
T 3dw8_B 315 M---------------ENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYN-----------NFFRM 368 (447)
T ss_dssp C---------------CSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECST-----------TEEEE
T ss_pred C---------------CccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccC-----------CEEEE
Confidence 1 12223333333211 2237999999998655543 46999
Q ss_pred EeCCCCCC
Q 003363 409 IDWPTNGN 416 (826)
Q Consensus 409 ~d~~~~~~ 416 (826)
||+.+++.
T Consensus 369 wd~~~~~~ 376 (447)
T 3dw8_B 369 FDRNTKRD 376 (447)
T ss_dssp EETTTCCE
T ss_pred EEcCCCcc
Confidence 99988664
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.10 E-value=6.8e-10 Score=121.02 Aligned_cols=279 Identities=9% Similarity=-0.009 Sum_probs=149.5
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (826)
++|||+.++-. ..+..+.+|++.+. .....+.... ..+...+|||||++||..... +...+|.
T Consensus 74 ~sp~~~~l~s~---------s~D~~v~iWd~~~~-~~~~~~~~h~-----~~v~~~~~s~~g~~las~~~d--~~v~iw~ 136 (380)
T 3iz6_a 74 WTPEKNWIVSA---------SQDGRLIVWNALTS-QKTHAIKLHC-----PWVMECAFAPNGQSVACGGLD--SACSIFN 136 (380)
T ss_dssp ECTTSSCEEEE---------ETTSEEEEEETTTT-EEEEEEECCC-----TTCCCCEECTTSSEEEECCSS--SCCEEEE
T ss_pred EcCCCCEEEEE---------eCCCeEEEEECCCC-ccceEEecCC-----CCEEEEEECCCCCEEEEeeCC--CcEEEEE
Confidence 47777766432 23456777765322 2222232222 347788999999999875432 3333444
Q ss_pred EecCCce---eEEEecCCCccccccCCCcccceeecCCCC-eEEEEeecCCCCCCCccCCCCCCCC-----CCccCCCCC
Q 003363 184 LWSQSQL---EKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVAEEPSPSKPTFSLGSTKGGS-----SDKDCNSWK 254 (826)
Q Consensus 184 i~~~~~~---~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~-~ia~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 254 (826)
+...... ..+...-.+..+.+ ..+.|+|++. .|+..+.+.... .|+........ ....+....
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v------~~~~~~~~~~~~l~s~s~D~~i~--~wd~~~~~~~~~~~~~~~~~h~~~v 208 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYA------SSCQYVPDQETRLITGSGDQTCV--LWDVTTGQRISIFGSEFPSGHTADV 208 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCC------CCCBCCSSSSSCEEEECTTSCEE--EECTTTCCEEEEECCCSSSSCCSCE
T ss_pred CCCCccccCCccceeeccCCCcce------EEEEEecCCCCEEEEECCCCcEE--EEEcCCCcEEEEeecccCCCCccCe
Confidence 3311100 00111112222333 6788999854 577666665443 33322111110 011223333
Q ss_pred Ccceeec-CCCccCCCccCceEEEEEcc-CCc-eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeec
Q 003363 255 GQGDWEE-DWGETYAGKRQPSLFVININ-SGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCY 331 (826)
Q Consensus 255 ~~~~~~~-d~g~~~~~~~~~~l~v~d~~-~g~-~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~ 331 (826)
....|.+ +....+++..+..|.+||+. +++ ++.+ ......+..++|+|||+. |+..+
T Consensus 209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~----l~s~s-------------- 268 (380)
T 3iz6_a 209 LSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY--HGHEGDINSVKFFPDGQR----FGTGS-------------- 268 (380)
T ss_dssp EEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE--CCCSSCCCEEEECTTSSE----EEEEC--------------
T ss_pred EEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE--CCcCCCeEEEEEecCCCe----EEEEc--------------
Confidence 3344443 32233445567889999986 333 3444 334456789999999997 77665
Q ss_pred cCCCceEEEEcccccchhhhhhhhcCCCCCCcce-ecCCC-------CccccCceecCCCCEEEEEeccCCCCCCCCccc
Q 003363 332 NRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLTES-------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSAT 403 (826)
Q Consensus 332 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~Lt~~-------~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~ 403 (826)
.+..|.++|+ .++... .+... ...+....|||||+.|+..+.+
T Consensus 269 -~D~~i~lwd~-----------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d----------- 319 (380)
T 3iz6_a 269 -DDGTCRLFDM-----------------RTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN----------- 319 (380)
T ss_dssp -SSSCEEEEET-----------------TTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT-----------
T ss_pred -CCCeEEEEEC-----------------CCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECC-----------
Confidence 3346888887 343322 22211 1235678999999988765543
Q ss_pred ceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003363 404 DSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (826)
Q Consensus 404 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (826)
..|++||..+++... .+... ...+...+..++|+|||+.| ++...++...+|.
T Consensus 320 g~i~vwd~~~~~~~~---------~~~~~------~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 320 GDCYVWDTLLAEMVL---------NLGTL------QNSHEGRISCLGLSSDGSAL-CTGSWDKNLKIWA 372 (380)
T ss_dssp SCEEEEETTTCCEEE---------EECCS------CSSCCCCCCEEEECSSSSEE-EEECTTSCEEEEE
T ss_pred CCEEEEECCCCceEE---------EEecc------cCCCCCceEEEEECCCCCEE-EEeeCCCCEEEEe
Confidence 458999987654321 00000 00022245678899999965 5555566666664
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.10 E-value=1.4e-08 Score=107.97 Aligned_cols=248 Identities=15% Similarity=0.105 Sum_probs=135.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecC--CceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ--SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
..+....|||||++|+.....+ .+.+|.. ............. .....++|+++.|+..+.+...
T Consensus 87 ~~V~~~~~s~dg~~l~s~~~d~-----~i~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~s~s~d~~~ 152 (340)
T 4aow_A 87 HFVSDVVISSDGQFALSGSWDG-----TLRLWDLTTGTTTRRFVGHTKD---------VLSVAFSSDNRQIVSGSRDKTI 152 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEECCSSC---------EEEEEECTTSSCEEEEETTSCE
T ss_pred CCEEEEEECCCCCEEEEEcccc-----cceEEeecccceeeeecCCCCc---------eeEEEEeecCccceeecCCCeE
Confidence 4588999999999998876543 4556632 2222222211111 1577899999999888766543
Q ss_pred CCCCccCCCCC-CCCCCccCCCCCCcceeecCCCcc--CCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCC
Q 003363 232 SKPTFSLGSTK-GGSSDKDCNSWKGQGDWEEDWGET--YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308 (826)
Q Consensus 232 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~g~~--~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~ 308 (826)
.. |+..... .......+........|.++.... +++.....|.+||+.+++..... ......+..++|+|||+.
T Consensus 153 ~~--~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~-~~h~~~v~~~~~s~~~~~ 229 (340)
T 4aow_A 153 KL--WNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH-IGHTGYLNTVTVSPDGSL 229 (340)
T ss_dssp EE--ECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSE
T ss_pred EE--EEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEe-cCCCCcEEEEEECCCCCE
Confidence 21 2211000 001111222222233444442221 23334678999999988765442 233446788999999997
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEE
Q 003363 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVF 388 (826)
Q Consensus 309 ~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f 388 (826)
|+..+ .+..|.++|+ .+............+....|+|++..++
T Consensus 230 ----l~s~s---------------~Dg~i~iwd~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~- 272 (340)
T 4aow_A 230 ----CASGG---------------KDGQAMLWDL-----------------NEGKHLYTLDGGDIINALCFSPNRYWLC- 272 (340)
T ss_dssp ----EEEEE---------------TTCEEEEEET-----------------TTTEEEEEEECSSCEEEEEECSSSSEEE-
T ss_pred ----EEEEe---------------CCCeEEEEEe-----------------ccCceeeeecCCceEEeeecCCCCceee-
Confidence 76655 3346888888 4444333333344567789999987554
Q ss_pred EeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeE
Q 003363 389 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 468 (826)
Q Consensus 389 ~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~ 468 (826)
.+.+ ..|.+||+.++......... ... .... .....+..++|+|||+.| ++...++..
T Consensus 273 ~~~d-----------~~i~iwd~~~~~~~~~~~~~--~~~-------~~~~-~h~~~v~~l~~s~dg~~l-~sgs~Dg~v 330 (340)
T 4aow_A 273 AATG-----------PSIKIWDLEGKIIVDELKQE--VIS-------TSSK-AEPPQCTSLAWSADGQTL-FAGYTDNLV 330 (340)
T ss_dssp EEET-----------TEEEEEETTTTEEEEEECCC-----------------CCCCCEEEEEECTTSSEE-EEEETTSCE
T ss_pred ccCC-----------CEEEEEECCCCeEEEecccc--cee-------eecc-CCCCCEEEEEECCCCCEE-EEEeCCCEE
Confidence 3322 45889998774432110000 000 0000 011234567899999966 455555655
Q ss_pred EEEEEECCCCc
Q 003363 469 VIISVNVSSGE 479 (826)
Q Consensus 469 ~l~~vdl~tg~ 479 (826)
.|| |+.+|+
T Consensus 331 ~iW--~~~tGt 339 (340)
T 4aow_A 331 RVW--QVTIGT 339 (340)
T ss_dssp EEE--EEEC--
T ss_pred EEE--eCCCcC
Confidence 555 555664
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.6e-09 Score=113.42 Aligned_cols=246 Identities=10% Similarity=0.057 Sum_probs=139.4
Q ss_pred ecCCCC---cceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEE------EeCCCCCeEEEEe
Q 003363 102 NSGNGN---GTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAV------VPSPSGSKLLVVR 172 (826)
Q Consensus 102 ~~~s~d---g~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~------~~SPdG~~la~~~ 172 (826)
-.++|+ |+.++... ....+.++++.........+.... ..+... +|||||+.|+...
T Consensus 71 ~~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~s~~~~~l~~~~ 136 (357)
T 3i2n_A 71 GTFGATSLQQRYLATGD---------FGGNLHIWNLEAPEMPVYSVKGHK-----EIINAIDGIGGLGIGEGAPEIVTGS 136 (357)
T ss_dssp EECTTCCTTTCCEEEEE---------TTSCEEEECTTSCSSCSEEECCCS-----SCEEEEEEESGGGCC-CCCEEEEEE
T ss_pred EEEcCCCCCCceEEEec---------CCCeEEEEeCCCCCccEEEEEecc-----cceEEEeeccccccCCCccEEEEEe
Confidence 345677 67665532 234566666643321233333222 335555 5799999998876
Q ss_pred cCCCCCCeEEEEec--CCc-eeEEEecCCCc-cccccCCCccccee----ecCCCCeEEEEeecCCCCCCCccCCCCCCC
Q 003363 173 NPENESPIQFELWS--QSQ-LEKEFHVPQTV-HGSVYADGWFEGIS----WNSDETLIAYVAEEPSPSKPTFSLGSTKGG 244 (826)
Q Consensus 173 ~~~~~~~~~~~i~~--~~~-~~~~~~~~~~~-~g~v~~~~~~~~~~----wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~ 244 (826)
..+ .+.+|+ .+. .........+. ...+ ..+. |+||++.|+..+.+
T Consensus 137 ~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~v------~~~~~~~~~~~~~~~l~~~~~d---------------- 189 (357)
T 3i2n_A 137 RDG-----TVKVWDPRQKDDPVANMEPVQGENKRDC------WTVAFGNAYNQEERVVCAGYDN---------------- 189 (357)
T ss_dssp TTS-----CEEEECTTSCSSCSEEECCCTTSCCCCE------EEEEEECCCC-CCCEEEEEETT----------------
T ss_pred CCC-----eEEEEeCCCCCCcceeccccCCCCCCce------EEEEEEeccCCCCCEEEEEccC----------------
Confidence 543 456662 222 33333221111 1111 4444 89999988876432
Q ss_pred CCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEee---CCCCCccEEEEEeecCc
Q 003363 245 SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP---LNEGLHQYLVFVGWSSE 321 (826)
Q Consensus 245 ~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSP---Dg~~~~~~lvf~~~~~~ 321 (826)
..|.+||+.+++.... ......+..+.|+| +++. |+..+
T Consensus 190 ----------------------------~~i~i~d~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~----l~~~~---- 231 (357)
T 3i2n_A 190 ----------------------------GDIKLFDLRNMALRWE--TNIKNGVCSLEFDRKDISMNK----LVATS---- 231 (357)
T ss_dssp ----------------------------SEEEEEETTTTEEEEE--EECSSCEEEEEESCSSSSCCE----EEEEE----
T ss_pred ----------------------------CeEEEEECccCceeee--cCCCCceEEEEcCCCCCCCCE----EEEEC----
Confidence 5799999999887665 34445678999999 8886 76655
Q ss_pred ceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ce-----ecCCCCccccCceecCCCCEEEEEeccCCC
Q 003363 322 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VV-----NLTESISSAFFPRFSPDGKFLVFLSAKSSV 395 (826)
Q Consensus 322 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~-----~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~ 395 (826)
.+..|+++|+. ++. .. .+..+...+....|+|||+.+++....+
T Consensus 232 -----------~dg~i~i~d~~-----------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-- 281 (357)
T 3i2n_A 232 -----------LEGKFHVFDMR-----------------TQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA-- 281 (357)
T ss_dssp -----------STTEEEEEEEE-----------------EEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETT--
T ss_pred -----------CCCeEEEEeCc-----------------CCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCC--
Confidence 23367778772 221 11 2225666788899999999544444332
Q ss_pred CCCCCcccceEEEEeCCCCCCCCcccc---------eeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCC
Q 003363 396 DSGAHSATDSLHRIDWPTNGNFSSLEK---------IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 466 (826)
Q Consensus 396 ~~g~~~~~~~l~~~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~ 466 (826)
..|++||+..+........ .......... +...+..+.|+|||+.|+++...++
T Consensus 282 --------g~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---------~~~~v~~~~~s~~~~~l~~s~~~d~ 344 (357)
T 3i2n_A 282 --------GGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL---------STQPISSLDWSPDKRGLCVCSSFDQ 344 (357)
T ss_dssp --------SEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC---------CSSCEEEEEECSSSTTEEEEEETTS
T ss_pred --------CcEEEeecCCCcccccccCCCCccccccccceeecccc---------CCCCeeEEEEcCCCCeEEEEecCCC
Confidence 4588888776543211100 0011111110 1224557889999998876666666
Q ss_pred eEEEEEE
Q 003363 467 SQVIISV 473 (826)
Q Consensus 467 ~~~l~~v 473 (826)
...+|.+
T Consensus 345 ~i~iw~~ 351 (357)
T 3i2n_A 345 TVRVLIV 351 (357)
T ss_dssp EEEEEEE
T ss_pred cEEEEEC
Confidence 6666644
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-08 Score=106.78 Aligned_cols=252 Identities=14% Similarity=0.039 Sum_probs=145.3
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
....|+|+|||+.|+++.... ..++.+...+.. +....... . ..++.++|||+.++. ..
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~---~~i~~~~~~~~~-~~~~~~~~---~------~~~l~~~~dg~l~v~--~~------ 87 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQ---NRTWAWSDDGQL-SPEMHPSH---H------QNGHCLNKQGHLIAC--SH------ 87 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGG---TEEEEEETTSCE-EEEESSCS---S------EEEEEECTTCCEEEE--ET------
T ss_pred cccCCeEeCCCCEEEEEeCCC---CEEEEEECCCCe-EEEECCCC---C------cceeeECCCCcEEEE--ec------
Confidence 466899999999888876543 246666643333 33322211 1 168999999984433 21
Q ss_pred CccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCC---CCccceEEEeeCCCCCcc
Q 003363 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~---~~~~~~~~wSPDg~~~~~ 311 (826)
....|+++|..+|+.+.+..... ...+..++++|||+
T Consensus 88 ------------------------------------~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~---- 127 (296)
T 3e5z_A 88 ------------------------------------GLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS---- 127 (296)
T ss_dssp ------------------------------------TTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC----
T ss_pred ------------------------------------CCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC----
Confidence 12579999998888776521111 12355789999997
Q ss_pred EEEEEeecCcce--eeeeee-eccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEE
Q 003363 312 YLVFVGWSSETR--KLGIKY-CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVF 388 (826)
Q Consensus 312 ~lvf~~~~~~~~--~~g~~~-~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f 388 (826)
|+++....... ..+... .......||+++. . +..+.+...........|+|||+.| +
T Consensus 128 -l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~-----------------~-g~~~~~~~~~~~~~gi~~s~dg~~l-v 187 (296)
T 3e5z_A 128 -LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP-----------------D-GTLSAPIRDRVKPNGLAFLPSGNLL-V 187 (296)
T ss_dssp -EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT-----------------T-SCEEEEECCCSSEEEEEECTTSCEE-E
T ss_pred -EEEECCccccccccccccccccCCCcEEEEECC-----------------C-CCEEEeecCCCCCccEEECCCCCEE-E
Confidence 66652100000 000000 0011247999986 4 5566665555556778999999988 5
Q ss_pred EeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeE
Q 003363 389 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 468 (826)
Q Consensus 389 ~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~ 468 (826)
.... ...|+++|+...+. +. .. ..++ .. .. ..+..+++++||+ |+++. ..
T Consensus 188 ~~~~----------~~~i~~~~~~~~g~--~~-~~---~~~~-~~-~~-------~~p~~i~~d~~G~-l~v~~----~~ 237 (296)
T 3e5z_A 188 SDTG----------DNATHRYCLNARGE--TE-YQ---GVHF-TV-EP-------GKTDGLRVDAGGL-IWASA----GD 237 (296)
T ss_dssp EETT----------TTEEEEEEECSSSC--EE-EE---EEEE-CC-SS-------SCCCSEEEBTTSC-EEEEE----TT
T ss_pred EeCC----------CCeEEEEEECCCCc--Cc-CC---CeEe-eC-CC-------CCCCeEEECCCCC-EEEEc----CC
Confidence 5533 25799999863222 10 00 1111 00 00 1234678999997 66655 34
Q ss_pred EEEEEECCCCcEEEecCCCCCeeeEEE-eecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 469 VIISVNVSSGELLRITPAESNFSWSLL-TLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 469 ~l~~vdl~tg~~~~lt~~~~~~~~~~~-s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
.|+++|.++..+..+..... .....| +++++.|++...+ .|+.++..++
T Consensus 238 ~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-----~l~~~~~~~~ 287 (296)
T 3e5z_A 238 GVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-----EFWSIETNVR 287 (296)
T ss_dssp EEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETT-----EEEEEECSCC
T ss_pred eEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC-----eEEEEEcccc
Confidence 68888987655566655444 455567 4677777766543 5777776543
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.08 E-value=2.8e-09 Score=112.88 Aligned_cols=253 Identities=11% Similarity=0.093 Sum_probs=146.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecC--CCCeEEEEeecC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNS--DETLIAYVAEEP 229 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSP--Dg~~ia~~~~~~ 229 (826)
..+...+|||||++||..+..+ .+.+|+ .+....+..+ .+..+.| ..++|+| +|+.|+..+.+.
T Consensus 14 ~~V~~v~~s~~g~~lasgs~D~-----~v~lwd~~~~~~~~~~~l-~gH~~~V------~~v~~~~~~~~~~l~s~s~D~ 81 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSSDR-----SVKIFDVRNGGQILIADL-RGHEGPV------WQVAWAHPMYGNILASCSYDR 81 (316)
T ss_dssp CCEEEEEECGGGCEEEEEETTT-----EEEEEEEETTEEEEEEEE-ECCSSCE------EEEEECCGGGSSCEEEEETTS
T ss_pred CeEEEeeEcCCCCEEEEEeCCC-----eEEEEEecCCCcEEEEEE-cCCCccE------EEEEeCCCCCCCEEEEEECCC
Confidence 3588899999999999876543 456662 2322222222 2333334 7899987 489999888777
Q ss_pred CCCCCCccCCCCC--CCCCCccCCCCCCcceeecCC-C-ccCCCccCceEEEEEccCCc-eEecc-CCCCCCccceEEEe
Q 003363 230 SPSKPTFSLGSTK--GGSSDKDCNSWKGQGDWEEDW-G-ETYAGKRQPSLFVININSGE-VQAVK-GIPKSLSVGQVVWA 303 (826)
Q Consensus 230 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~-g-~~~~~~~~~~l~v~d~~~g~-~~~l~-~~~~~~~~~~~~wS 303 (826)
... .|+..... .......+...+....|.++- | ...++..+..|.+||+.++. ..... -......+..++|+
T Consensus 82 ~v~--iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 159 (316)
T 3bg1_A 82 KVI--IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWA 159 (316)
T ss_dssp CEE--EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEEC
T ss_pred EEE--EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEc
Confidence 554 33322111 111123455566677888872 3 33455567889999998763 22111 02233456788999
Q ss_pred eCC-----------------CCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCC---c
Q 003363 304 PLN-----------------EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL---P 363 (826)
Q Consensus 304 PDg-----------------~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~---~ 363 (826)
|++ +. |+..+ .+..|.++|+. ..+ .
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~----l~sgs---------------~D~~v~lWd~~----------------~~~~~~~ 204 (316)
T 3bg1_A 160 PAVVPGSLIDHPSGQKPNYIKR----FASGG---------------CDNLIKLWKEE----------------EDGQWKE 204 (316)
T ss_dssp CCCCC------CCSCCCCCCCB----EECCB---------------TTSBCCEEEEC----------------TTSCEEE
T ss_pred cccCCccccccccccCccccce----EEEec---------------CCCeEEEEEeC----------------CCCccce
Confidence 984 33 33322 23356667762 121 2
Q ss_pred ceecCCCCccccCceecCCC----CEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCc
Q 003363 364 VVNLTESISSAFFPRFSPDG----KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFP 439 (826)
Q Consensus 364 ~~~Lt~~~~~~~~p~~SpDG----~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 439 (826)
...+..+...+...+|+||+ +.|+..+.+ ..|.+||+.+......... +.. .
T Consensus 205 ~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D-----------~~v~iw~~~~~~~~~~~~~---~~~---~------- 260 (316)
T 3bg1_A 205 EQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQD-----------GRVFIWTCDDASSNTWSPK---LLH---K------- 260 (316)
T ss_dssp EECCBCCSSCEEEEECCCCSSCSCCEEEEEETT-----------CEEEEEECSSTTCCCCBCC---EEE---E-------
T ss_pred eeecccCCCceEEEEecCCCCCCCceEEEEcCC-----------CeEEEEEccCccccchhhh---hhh---c-------
Confidence 34566677778899999997 667655544 4588888765321000000 000 0
Q ss_pred ccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003363 440 GLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 483 (826)
Q Consensus 440 g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~l 483 (826)
+...+..++|+|||+.| ++...++...||..+.. |+..++
T Consensus 261 --~~~~v~~v~~sp~g~~l-as~~~D~~v~lw~~~~~-g~~~~~ 300 (316)
T 3bg1_A 261 --FNDVVWHVSWSITANIL-AVSGGDNKVTLWKESVD-GQWVCI 300 (316)
T ss_dssp --CSSCEEEEEECTTTCCE-EEEESSSCEEEEEECTT-SCEEEE
T ss_pred --CCCcEEEEEEcCCCCEE-EEEcCCCeEEEEEECCC-CcEEEe
Confidence 11234577899999855 45566777788877653 555444
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-08 Score=116.61 Aligned_cols=236 Identities=7% Similarity=-0.032 Sum_probs=137.6
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccC
Q 003363 160 VPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 238 (826)
Q Consensus 160 ~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~ 238 (826)
+++|+|+.++ ....++ .+.+++ ..++..+.+...... ..+.|||||++|+..+.+
T Consensus 144 ~~~p~~~~~v--s~~~d~--~V~v~D~~t~~~~~~i~~g~~~----------~~v~~spdg~~l~v~~~d---------- 199 (543)
T 1nir_A 144 DLDLPNLFSV--TLRDAG--QIALVDGDSKKIVKVIDTGYAV----------HISRMSASGRYLLVIGRD---------- 199 (543)
T ss_dssp CCCGGGEEEE--EEGGGT--EEEEEETTTCCEEEEEECSTTE----------EEEEECTTSCEEEEEETT----------
T ss_pred ccCCCCEEEE--EEcCCC--eEEEEECCCceEEEEEecCccc----------ceEEECCCCCEEEEECCC----------
Confidence 5889885443 332212 344444 445555555433333 588899999988776432
Q ss_pred CCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEc--cCCceEeccCCCCCCccceEEEee----CCCCCccE
Q 003363 239 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI--NSGEVQAVKGIPKSLSVGQVVWAP----LNEGLHQY 312 (826)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~--~~g~~~~l~~~~~~~~~~~~~wSP----Dg~~~~~~ 312 (826)
..|.+||+ .++++..- ++....+..++||| ||+.
T Consensus 200 ----------------------------------~~V~v~D~~~~t~~~~~~--i~~g~~p~~va~sp~~~~dg~~---- 239 (543)
T 1nir_A 200 ----------------------------------ARIDMIDLWAKEPTKVAE--IKIGIEARSVESSKFKGYEDRY---- 239 (543)
T ss_dssp ----------------------------------SEEEEEETTSSSCEEEEE--EECCSEEEEEEECCSTTCTTTE----
T ss_pred ----------------------------------CeEEEEECcCCCCcEEEE--EecCCCcceEEeCCCcCCCCCE----
Confidence 57999999 77765433 23344677899999 9996
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcce-ecCCC-----------CccccCceec
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLTES-----------ISSAFFPRFS 380 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~Lt~~-----------~~~~~~p~~S 380 (826)
|+.... .+..|.++|. .++++. .+... ........+|
T Consensus 240 l~v~~~--------------~~~~v~v~D~-----------------~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s 288 (543)
T 1nir_A 240 TIAGAY--------------WPPQFAIMDG-----------------ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS 288 (543)
T ss_dssp EEEEEE--------------ESSEEEEEET-----------------TTCCEEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred EEEEEc--------------cCCeEEEEec-----------------cccccceeecccCcccCccccccCCceEEEEEC
Confidence 655441 1236778887 454432 22211 1134567899
Q ss_pred CCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEE
Q 003363 381 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 460 (826)
Q Consensus 381 pDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~ 460 (826)
|||+.+++.... ...|+++|..+.+...++ .++ . +. .+..+.|+|||++++.
T Consensus 289 ~~~~~~~vs~~~----------~g~i~vvd~~~~~~l~~~-----~i~---~---~~-------~~~~~~~spdg~~l~v 340 (543)
T 1nir_A 289 HEHPEFIVNVKE----------TGKVLLVNYKDIDNLTVT-----SIG---A---AP-------FLHDGGWDSSHRYFMT 340 (543)
T ss_dssp SSSSEEEEEETT----------TTEEEEEECTTSSSCEEE-----EEE---C---CS-------SCCCEEECTTSCEEEE
T ss_pred CCCCEEEEEECC----------CCeEEEEEecCCCcceeE-----Eec---c---Cc-------CccCceECCCCCEEEE
Confidence 999987655433 367999998775432110 011 0 11 2346789999998876
Q ss_pred EEEeCCeEEEEEEECCCCcEEEecCCC-C---CeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003363 461 SSIWGSSQVIISVNVSSGELLRITPAE-S---NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (826)
Q Consensus 461 ~~~~~~~~~l~~vdl~tg~~~~lt~~~-~---~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 522 (826)
+...++ .|..+|+.++++....... . ......++++++.++++.+..+ ..|.+.+..+
T Consensus 341 a~~~~~--~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d--~~V~v~d~~~ 402 (543)
T 1nir_A 341 AANNSN--KVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGD--GSISLIGTDP 402 (543)
T ss_dssp EEGGGT--EEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSS--SEEEEEECCT
T ss_pred EecCCC--eEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCC--ceEEEEEeCC
Confidence 543333 4666899999877654321 1 0111224667677665543222 2467777654
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.07 E-value=2e-08 Score=106.94 Aligned_cols=277 Identities=6% Similarity=-0.098 Sum_probs=152.5
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCC--ccceeecCCcceecccEEEEeCCCCC-eEEEEecCCCCCC
Q 003363 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENEN--SVTFQWAPFPVEMTGASAVVPSPSGS-KLLVVRNPENESP 179 (826)
Q Consensus 103 ~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~--~~~lt~~~~~~~~~~~~~~~~SPdG~-~la~~~~~~~~~~ 179 (826)
.++|||+.++... ....+.++++...... ...+.... ..+...+|+|+|+ .|+.....+
T Consensus 18 ~~s~~~~~l~~~~---------~d~~v~iw~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~~dg---- 79 (342)
T 1yfq_A 18 KIIPSKSLLLITS---------WDGSLTVYKFDIQAKNVDLLQSLRYK-----HPLLCCNFIDNTDLQIYVGTVQG---- 79 (342)
T ss_dssp EEEGGGTEEEEEE---------TTSEEEEEEEETTTTEEEEEEEEECS-----SCEEEEEEEESSSEEEEEEETTS----
T ss_pred EEcCCCCEEEEEc---------CCCeEEEEEeCCCCccccceeeeecC-----CceEEEEECCCCCcEEEEEcCCC----
Confidence 3478888776542 2346667776544311 22222222 4588999999999 888776433
Q ss_pred eEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcc
Q 003363 180 IQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 257 (826)
Q Consensus 180 ~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (826)
.+.+|+ .......+.. ....+.| ..+.|+| ++.|+..+.+
T Consensus 80 -~i~~wd~~~~~~~~~~~~-~~~~~~v------~~l~~~~-~~~l~s~~~d----------------------------- 121 (342)
T 1yfq_A 80 -EILKVDLIGSPSFQALTN-NEANLGI------CRICKYG-DDKLIAASWD----------------------------- 121 (342)
T ss_dssp -CEEEECSSSSSSEEECBS-CCCCSCE------EEEEEET-TTEEEEEETT-----------------------------
T ss_pred -eEEEEEeccCCceEeccc-cCCCCce------EEEEeCC-CCEEEEEcCC-----------------------------
Confidence 355663 3322222111 0022223 7899999 8888876432
Q ss_pred eeecCCCccCCCccCceEEEEEccC---------CceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeee
Q 003363 258 DWEEDWGETYAGKRQPSLFVININS---------GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK 328 (826)
Q Consensus 258 ~~~~d~g~~~~~~~~~~l~v~d~~~---------g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~ 328 (826)
..|.+||+.+ ++.... ......+..++|+|++ |+..+
T Consensus 122 ---------------~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~------l~~~~----------- 167 (342)
T 1yfq_A 122 ---------------GLIEVIDPRNYGDGVIAVKNLNSNN--TKVKNKIFTMDTNSSR------LIVGM----------- 167 (342)
T ss_dssp ---------------SEEEEECHHHHTTBCEEEEESCSSS--SSSCCCEEEEEECSSE------EEEEE-----------
T ss_pred ---------------CeEEEEcccccccccccccCCeeeE--EeeCCceEEEEecCCc------EEEEe-----------
Confidence 5688899876 553333 3344567788998865 33333
Q ss_pred eeccCCCceEEEEcccccchhhhhhhhcCCCCC-Cc---ceecCCCCccccCceecC-CCCEEEEEeccCCCCCCCCccc
Q 003363 329 YCYNRPCALYAVRVSLYKSEASELELKESSSED-LP---VVNLTESISSAFFPRFSP-DGKFLVFLSAKSSVDSGAHSAT 403 (826)
Q Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~---~~~Lt~~~~~~~~p~~Sp-DG~~l~f~s~~~~~~~g~~~~~ 403 (826)
....|+.+|+ .+ +. ..........+....|+| ||+.|+..+.+
T Consensus 168 ----~d~~i~i~d~-----------------~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d----------- 215 (342)
T 1yfq_A 168 ----NNSQVQWFRL-----------------PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID----------- 215 (342)
T ss_dssp ----STTEEEEEES-----------------SCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETT-----------
T ss_pred ----CCCeEEEEEC-----------------CccccccceeeecCCCCceeEEEECCCCCCEEEEEecC-----------
Confidence 2337888998 33 22 123334455678899999 99988876654
Q ss_pred ceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003363 404 DSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 483 (826)
Q Consensus 404 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~l 483 (826)
..+.+|+++.++...... ....+.......-.......+..++|+|||+.|+ +...++ .|..+|+.+++....
T Consensus 216 g~i~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg--~i~vwd~~~~~~~~~ 288 (342)
T 1yfq_A 216 GRVAVEFFDDQGDDYNSS----KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY-TAGSDG--IISCWNLQTRKKIKN 288 (342)
T ss_dssp SEEEEEECCTTCCSTTCT----TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEE-EEETTS--CEEEEETTTTEEEEE
T ss_pred CcEEEEEEcCCCcccccc----cceeeecccccccccccceeEEEEEEcCCCCEEE-EecCCc--eEEEEcCccHhHhhh
Confidence 357777777651100000 0000000000000000011345678999998665 433333 466678888876554
Q ss_pred cCCC-CCeeeEEEeecCCEEEEEEeCC
Q 003363 484 TPAE-SNFSWSLLTLDGDNIIAVSSSP 509 (826)
Q Consensus 484 t~~~-~~~~~~~~s~dg~~l~~~~s~~ 509 (826)
.... .. ....++++++.++....+.
T Consensus 289 ~~~~h~~-~v~~~~~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 289 FAKFNED-SVVKIACSDNILCLATSDD 314 (342)
T ss_dssp CCCCSSS-EEEEEEECSSEEEEEEECT
T ss_pred hhcccCC-CceEecCCCCeEEEEecCC
Confidence 4433 21 2223338888777666543
|
| >1ei9_A Palmitoyl protein thioesterase 1; alpha/beta hydrolase, glycoprotein, hydrolase; HET: NDG NAG; 2.25A {Bos taurus} SCOP: c.69.1.13 PDB: 1eh5_A* 1exw_A* 3gro_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-09 Score=112.32 Aligned_cols=105 Identities=15% Similarity=0.079 Sum_probs=68.9
Q ss_pred EEEEEcCCCCCCCC-ccchHHHHHHHHC--CcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 594 LIVVLHGGPHSVSL-SSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 594 ~vv~~HGg~~~~~~-~~~~~~~~~la~~--G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
.||++||.+..... ..|......|++. |+.|+++|+ | +|.+..... .+.....+++...++.+.....+ .
T Consensus 7 pvVllHG~~~~~~~~~~~~~~~~~L~~~~~g~~v~~~d~-G---~g~s~~~~~--~~~~~~~~~~~~~~~~l~~~~~l-~ 79 (279)
T 1ei9_A 7 PLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEI-G---KTLREDVEN--SFFLNVNSQVTTVCQILAKDPKL-Q 79 (279)
T ss_dssp CEEEECCTTCCSCCTTTTHHHHHHHHHHSTTCCEEECCC-S---SSHHHHHHH--HHHSCHHHHHHHHHHHHHSCGGG-T
T ss_pred cEEEECCCCCCCCCcccHHHHHHHHHHHCCCcEEEEEEe-C---CCCcccccc--ccccCHHHHHHHHHHHHHhhhhc-c
Confidence 48999996654322 4688888888765 889999997 7 443321000 00011123344444444332112 2
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCc-eeEEEecCCc
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDK-FVAAAARNPL 705 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~-~~a~v~~~p~ 705 (826)
+++.|+||||||.++..++.++|+. ++.+|+.++.
T Consensus 80 ~~~~lvGhSmGG~ia~~~a~~~~~~~v~~lv~~~~p 115 (279)
T 1ei9_A 80 QGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQ 115 (279)
T ss_dssp TCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESCC
T ss_pred CCEEEEEECHHHHHHHHHHHHcCCcccceEEEecCc
Confidence 6899999999999999999999984 9999877753
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.8e-08 Score=107.34 Aligned_cols=236 Identities=15% Similarity=0.180 Sum_probs=128.8
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc------eeEEEecCCCccccccCCCcccceeecCCCCeEEEEee
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ------LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 227 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~------~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~ 227 (826)
..+...+|||+|+.||..+..+ .+.+|+... ..+....-.+..+.| ..++|||||++||..+.
T Consensus 59 ~~v~~v~~sp~~~~las~s~D~-----~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V------~~v~~sp~g~~las~s~ 127 (330)
T 2hes_X 59 KAIRSVAWRPHTSLLAAGSFDS-----TVSIWAKEESADRTFEMDLLAIIEGHENEV------KGVAWSNDGYYLATCSR 127 (330)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEEC-------CCCEEEEEEC----CE------EEEEECTTSCEEEEEET
T ss_pred CCEEEEEECCCCCEEEEEeCCC-----cEEEEEcccCcCccccceeEEEEcCCCCcE------EEEEECCCCCEEEEEeC
Confidence 4588999999999998876543 455663210 111111112232333 78999999999988754
Q ss_pred cCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEcc-CCc----eEeccCCCCCCccceEEE
Q 003363 228 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGE----VQAVKGIPKSLSVGQVVW 302 (826)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-~g~----~~~l~~~~~~~~~~~~~w 302 (826)
+ ..|.+||+. +++ +..+ ......+..++|
T Consensus 128 D--------------------------------------------~~v~iwd~~~~~~~~~~~~~~--~~h~~~v~~v~~ 161 (330)
T 2hes_X 128 D--------------------------------------------KSVWIWETDESGEEYECISVL--QEHSQDVKHVIW 161 (330)
T ss_dssp T--------------------------------------------SCEEEEECCTTCCCCEEEEEE--CCCSSCEEEEEE
T ss_pred C--------------------------------------------CEEEEEeccCCCCCeEEEEEe--ccCCCceEEEEE
Confidence 3 468888884 322 2233 233446788999
Q ss_pred eeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCC---cceecCCCCccccCcee
Q 003363 303 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL---PVVNLTESISSAFFPRF 379 (826)
Q Consensus 303 SPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~Lt~~~~~~~~p~~ 379 (826)
+||++. |+..+ .+..|.++|. .++ ....+..+...+....|
T Consensus 162 ~p~~~~----l~s~s---------------~D~~i~iW~~-----------------~~~~~~~~~~~~~h~~~v~~~~~ 205 (330)
T 2hes_X 162 HPSEAL----LASSS---------------YDDTVRIWKD-----------------YDDDWECVAVLNGHEGTVWSSDF 205 (330)
T ss_dssp CSSSSE----EEEEE---------------TTSCEEEEEE-----------------ETTEEEEEEEECCCSSCEEEEEE
T ss_pred CCCCCE----EEEEc---------------CCCeEEEEEC-----------------CCCCeeEEEEccCCCCcEEEEEe
Confidence 999997 76665 2235666665 222 34556677777888999
Q ss_pred cCC--CCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCE
Q 003363 380 SPD--GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 457 (826)
Q Consensus 380 SpD--G~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~ 457 (826)
+|+ +..|+..+.+ ..|.+||+.++.... ......... +++.+...+..++|++++
T Consensus 206 ~~~~~~~~l~s~s~D-----------~~v~iw~~~~~~~~~--~~~~~~~~~--------~~~~h~~~v~~v~~s~~~-- 262 (330)
T 2hes_X 206 DKTEGVFRLCSGSDD-----------STVRVWKYMGDDEDD--QQEWVCEAI--------LPDVHKRQVYNVAWGFNG-- 262 (330)
T ss_dssp CCSSSSCEEEEEETT-----------SCEEEEEEEEECTTS--CEEEEEEEE--------CCSCCSSCEEEEEECTTS--
T ss_pred cCCCCeeEEEEEeCC-----------CeEEEEEecCCCccc--cceeEEeee--------cccccccceEEEEEcCCC--
Confidence 999 6666655543 347777765432210 000001111 111112234567898766
Q ss_pred EEEEEEeCCeEEEEEEECCCCcEEEe---cC-CCC-CeeeEEEeec-CCEEEEEEe
Q 003363 458 MLLSSIWGSSQVIISVNVSSGELLRI---TP-AES-NFSWSLLTLD-GDNIIAVSS 507 (826)
Q Consensus 458 l~~~~~~~~~~~l~~vdl~tg~~~~l---t~-~~~-~~~~~~~s~d-g~~l~~~~s 507 (826)
++++...++...||.+. +++.+.+ .. ... .+....|++. ++.++++.+
T Consensus 263 ~l~s~~~dg~v~iw~~~--~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s 316 (330)
T 2hes_X 263 LIASVGADGVLAVYEEV--DGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGG 316 (330)
T ss_dssp CEEEEETTSCEEEEEEE--TTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEE
T ss_pred EEEEEeCCCEEEEEEcC--CCceEEEeccccccccceEEEEEEecCCCceEEEEec
Confidence 34555556666676554 6643222 12 222 3444567773 233444443
|
| >1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester acylh hydrolase; HET: NAG F23; 1.40A {Candida cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A* 1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A* 1gz7_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.3e-11 Score=135.25 Aligned_cols=127 Identities=20% Similarity=0.231 Sum_probs=88.8
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCcc-ch--HHHH-HH-HHCCcEEEEECCCCCC-CCc--hhhhhcCCCCC
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YS--KSLA-FL-SSVGYSLLIVNYRGSL-GFG--EEALQSLPGKV 647 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~-~~--~~~~-~l-a~~G~~Vl~~d~rG~~-g~G--~~~~~~~~~~~ 647 (826)
+...+|.|.+....++.|+||++|||++...... +. ..+. .+ ...|++|+.+|||... |+. ....... .
T Consensus 98 l~l~v~~P~~~~~~~~~Pv~v~iHGGg~~~g~~~~~~~~~l~~~~~~~~~~~vvv~~nYRl~~~gf~~~~~~~~~~---~ 174 (534)
T 1llf_A 98 LTINVVRPPGTKAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGDDIKAEG---S 174 (534)
T ss_dssp CEEEEEECTTCCTTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHHHT---C
T ss_pred eEEEEEECCCCCCCCCceEEEEEeCCCcccCCCcccCchHHHHHHHhcCCCEEEEEeCCCCCCCCCCCcccccccC---C
Confidence 4556888975444568899999999987654432 22 1121 22 3468999999999743 111 1111111 2
Q ss_pred CcchHHHHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHhC--------CCceeEEEecCCc
Q 003363 648 GSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPL 705 (826)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~~~p~ 705 (826)
+...+.|+.++++|+.++ ...|++||.|+|+|+||.++..++... +.+|+++|+.+|.
T Consensus 175 ~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~l~~~~~~~~~~~~~lf~~ai~~Sg~ 243 (534)
T 1llf_A 175 GNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp TTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred CchhHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHhHHHHHHHHcCCCccccccccchhHhHhhhccC
Confidence 344589999999999885 347999999999999999887776653 4689999999984
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.2e-08 Score=121.38 Aligned_cols=185 Identities=10% Similarity=0.028 Sum_probs=110.5
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (826)
++|||+.++... ....+.+++.. +.+.. .+... ...+...+||| |++|+..+..+ .+.
T Consensus 25 fspdg~~lAsgs---------~Dg~I~lw~~~--~~~~~-~~~~~----~~~V~~l~fsp-g~~L~S~s~D~-----~v~ 82 (902)
T 2oaj_A 25 FDFTQNLLAIAT---------VTGEVHIYGQQ--QVEVV-IKLED----RSAIKEMRFVK-GIYLVVINAKD-----TVY 82 (902)
T ss_dssp EETTTTEEEEEE---------TTSEEEEECST--TCEEE-EECSS----CCCEEEEEEET-TTEEEEEETTC-----EEE
T ss_pred ECCCCCEEEEEe---------CCCEEEEEeCC--CcEEE-EEcCC----CCCEEEEEEcC-CCEEEEEECcC-----eEE
Confidence 378888776532 33466666542 22211 11111 14588999999 88888776543 577
Q ss_pred Eec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCC-----------CCCccC
Q 003363 184 LWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG-----------SSDKDC 250 (826)
Q Consensus 184 i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 250 (826)
+|+ .++....... ++.| ..++|+|||++|+..+.+.... .|+....... .....+
T Consensus 83 lWd~~~~~~~~~~~~----~~~V------~~v~~sp~g~~l~sgs~dg~V~--lwd~~~~~~~~~~i~~~~~~~~~~~~h 150 (902)
T 2oaj_A 83 VLSLYSQKVLTTVFV----PGKI------TSIDTDASLDWMLIGLQNGSMI--VYDIDRDQLSSFKLDNLQKSSFFPAAR 150 (902)
T ss_dssp EEETTTCSEEEEEEC----SSCE------EEEECCTTCSEEEEEETTSCEE--EEETTTTEEEEEEECCHHHHHTCSSSC
T ss_pred EEECCCCcEEEEEcC----CCCE------EEEEECCCCCEEEEEcCCCcEE--EEECCCCccccceeccccccccccccC
Confidence 783 3433333322 2233 7999999999999888776543 2332211110 122344
Q ss_pred CCCCCcceeecCC-CccCCCccCceEEEEEccCCceEec-cCC-----C-----------CCCccceEEEeeCCCCCccE
Q 003363 251 NSWKGQGDWEEDW-GETYAGKRQPSLFVININSGEVQAV-KGI-----P-----------KSLSVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 251 ~~~~~~~~~~~d~-g~~~~~~~~~~l~v~d~~~g~~~~l-~~~-----~-----------~~~~~~~~~wSPDg~~~~~~ 312 (826)
...+....|.|+. +..+++..+..+ +||+.+++.... ... + ....+..++|+|||+.
T Consensus 151 ~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~---- 225 (902)
T 2oaj_A 151 LSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH---- 225 (902)
T ss_dssp CCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE----
T ss_pred CCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE----
Confidence 5566677888853 344555667788 999998875533 111 0 0134778999999997
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEc
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRV 342 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~ 342 (826)
|+..+ .+..|.++|+
T Consensus 226 lasgs---------------~Dg~i~lWd~ 240 (902)
T 2oaj_A 226 IITIH---------------EDNSLVFWDA 240 (902)
T ss_dssp EEEEE---------------TTCCEEEEET
T ss_pred EEEEE---------------CCCeEEEEEC
Confidence 77666 2336777777
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.04 E-value=5.2e-08 Score=103.65 Aligned_cols=259 Identities=14% Similarity=0.105 Sum_probs=147.2
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEec-CCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~-~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
....++|+|||+ |+++...+ ..++.++ .+++...+... ...+ .++.|+|||+.++......
T Consensus 46 ~~~~~~~~~~g~-l~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~----------~~i~~~~dg~l~v~~~~~~--- 108 (333)
T 2dg1_A 46 QLEGLNFDRQGQ-LFLLDVFE---GNIFKINPETKEIKRPFVSHKANP----------AAIKIHKDGRLFVCYLGDF--- 108 (333)
T ss_dssp CEEEEEECTTSC-EEEEETTT---CEEEEECTTTCCEEEEEECSSSSE----------EEEEECTTSCEEEEECTTS---
T ss_pred cccCcEECCCCC-EEEEECCC---CEEEEEeCCCCcEEEEeeCCCCCc----------ceEEECCCCcEEEEeCCCC---
Confidence 357889999998 55543322 2566666 45555554421 2222 6899999997444331110
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEec-cCCCCCCccceEEEeeCCCCCcc
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l-~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
.....|+++|.++++.+.+ ........+..++++|||+
T Consensus 109 -------------------------------------~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~---- 147 (333)
T 2dg1_A 109 -------------------------------------KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG---- 147 (333)
T ss_dssp -------------------------------------SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC----
T ss_pred -------------------------------------CCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC----
Confidence 0125799999998887643 2112233567889999996
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEec
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~ 391 (826)
|++....... ......||++|. ++++.+.+.........+.|+|||+.|++...
T Consensus 148 -l~v~~~~~~~--------~~~~~~l~~~~~-----------------~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~ 201 (333)
T 2dg1_A 148 -FYFTDFRGYS--------TNPLGGVYYVSP-----------------DFRTVTPIIQNISVANGIALSTDEKVLWVTET 201 (333)
T ss_dssp -EEEEECCCBT--------TBCCEEEEEECT-----------------TSCCEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred -EEEEeccccc--------cCCCceEEEEeC-----------------CCCEEEEeecCCCcccceEECCCCCEEEEEeC
Confidence 6665532110 012347999987 55666655443334567899999998877654
Q ss_pred cCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003363 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (826)
Q Consensus 392 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (826)
. ...|+++|+.+++........ .+. ...... ..+..+++++||+ |+++... ...|+
T Consensus 202 ~----------~~~i~~~d~~~~g~~~~~~~~-~~~--~~~~~~--------~~~~~i~~d~~G~-l~v~~~~--~~~v~ 257 (333)
T 2dg1_A 202 T----------ANRLHRIALEDDGVTIQPFGA-TIP--YYFTGH--------EGPDSCCIDSDDN-LYVAMYG--QGRVL 257 (333)
T ss_dssp G----------GTEEEEEEECTTSSSEEEEEE-EEE--EECCSS--------SEEEEEEEBTTCC-EEEEEET--TTEEE
T ss_pred C----------CCeEEEEEecCCCcCcccccc-eEE--EecCCC--------CCCCceEECCCCC-EEEEEcC--CCEEE
Confidence 3 256999998653221100000 000 000000 0123567889997 6555432 23677
Q ss_pred EEECCCCcEEEecCCCC------CeeeEEEeecCCEEEEEEeCCC--CCCeEEEEeec
Q 003363 472 SVNVSSGELLRITPAES------NFSWSLLTLDGDNIIAVSSSPV--DVPQVKYGYFV 521 (826)
Q Consensus 472 ~vdl~tg~~~~lt~~~~------~~~~~~~s~dg~~l~~~~s~~~--~p~~l~~~~~~ 521 (826)
++|.++..+..+..... ......+++|++.|++...... ....|+.+++.
T Consensus 258 ~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 258 VFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp EECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred EECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 78886555555543321 2345577888888887766533 23456666643
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.2e-07 Score=101.18 Aligned_cols=300 Identities=9% Similarity=0.043 Sum_probs=157.5
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCcceecccEEEEeCCCCCeEEEEecC------CCC
Q 003363 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP------ENE 177 (826)
Q Consensus 105 s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~-~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~------~~~ 177 (826)
.+|++++ |..++.. . +.. ..+..++. ...+.+ ++.... .. ..++||||++|+..... ++.
T Consensus 81 ~~~~~~v-yV~n~~~-~-~~~-~~VsVID~--~t~~vv~~I~vG~------~P-gia~SpDgk~lyVan~~~~~~~~G~~ 147 (426)
T 3c75_H 81 APDARRV-YIQDPAH-F-AAI-TQQFVIDG--STGRILGMTDGGF------LP-HPVAAEDGSFFAQASTVFERIARGKR 147 (426)
T ss_dssp CCCTTEE-EEEECTT-T-CSS-EEEEEEET--TTTEEEEEEEECS------SC-EEEECTTSSCEEEEEEEEEETTEEEE
T ss_pred CCCCCEE-EEECCCc-C-CCC-CeEEEEEC--CCCEEEEEEECCC------CC-ceEECCCCCEEEEEeccccccccCCC
Confidence 3788775 6655432 0 001 45666553 333322 222222 24 78999999999766421 001
Q ss_pred CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCc
Q 003363 178 SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ 256 (826)
Q Consensus 178 ~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (826)
...+..++ ...+..+.+.+...... -....-.++.+||||++|+.....
T Consensus 148 ~~~VsviD~~t~~vv~~I~v~g~~r~--~~g~~P~~~~~spDGk~lyV~n~~---------------------------- 197 (426)
T 3c75_H 148 TDYVEVFDPVTFLPIADIELPDAPRF--LVGTYQWMNALTPDNKNLLFYQFS---------------------------- 197 (426)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCCCC--CBSCCGGGSEECTTSSEEEEEECS----------------------------
T ss_pred CCEEEEEECCCCcEEEEEECCCcccc--ccCCCcceEEEcCCCCEEEEEecC----------------------------
Confidence 23466666 45556665555311000 000001588999999987765321
Q ss_pred ceeecCCCccCCCccCceEEEEEccCCceEe-ccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCC
Q 003363 257 GDWEEDWGETYAGKRQPSLFVININSGEVQA-VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 335 (826)
Q Consensus 257 ~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~-l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~ 335 (826)
....|.++|+.++++.. +. .++ .....|+|+. .++... .+.
T Consensus 198 --------------~~~~VsVID~~t~kvv~~I~-v~g-----~~~~~p~g~~----~~v~~~--------------~dG 239 (426)
T 3c75_H 198 --------------PAPAVGVVDLEGKTFDRMLD-VPD-----CYHIFPASPT----VFYMNC--------------RDG 239 (426)
T ss_dssp --------------SSCEEEEEETTTTEEEEEEE-CCS-----EEEEEEEETT----EEEEEE--------------TTS
T ss_pred --------------CCCeEEEEECCCCeEEEEEE-cCC-----ceeeccCCCc----EEEEEc--------------CCC
Confidence 12679999999988653 31 211 1344566655 444331 122
Q ss_pred ceEEEEcccccchhhhhhhhcCCCCCCcce-e----cCCCCc-cccCceecCCCCEEEEEeccCCCCCCCCcccceEEEE
Q 003363 336 ALYAVRVSLYKSEASELELKESSSEDLPVV-N----LTESIS-SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 409 (826)
Q Consensus 336 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~----Lt~~~~-~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~ 409 (826)
.+..+++ .+++.. . +..... ....+.|++||+.++|.+.. ..++++
T Consensus 240 ~~~~V~~-----------------~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~-----------g~V~Vi 291 (426)
T 3c75_H 240 SLARVDF-----------------ADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYT-----------GKIFQA 291 (426)
T ss_dssp SEEEEEC-----------------CTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTT-----------SEEEEE
T ss_pred CEEEEEC-----------------CCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCC-----------CcEEEE
Confidence 4555554 222211 1 111111 12346789999999888642 369999
Q ss_pred eCCCCCCCCcccceeeeeeeeeccCCCC-CcccccCCCCCCccccCCCEEEEEEEeC-------CeEEEEEEECCCCcEE
Q 003363 410 DWPTNGNFSSLEKIVDVIPVVQCAEGDC-FPGLYSSSILSNPWLSDGCTMLLSSIWG-------SSQVIISVNVSSGELL 481 (826)
Q Consensus 410 d~~~~~~~~~~~~~~~~~~~~~~~~~~~-f~g~~~~~~~~~~ws~Dg~~l~~~~~~~-------~~~~l~~vdl~tg~~~ 481 (826)
|+.++....+. .+....... -.|....+...+.+++||+++|+..... ....|..+|+.++++.
T Consensus 292 D~~~~~~~v~~--------~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv 363 (426)
T 3c75_H 292 DLTAEGATFRA--------PIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERI 363 (426)
T ss_dssp EECSSCEEECC--------CEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred eccCCceEEee--------eeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEE
Confidence 98764432110 000000000 0000001223467899999998876532 2468999999998866
Q ss_pred EecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 482 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 482 ~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
.-.+-........+++||+.++++.... -..|.++|+.+.
T Consensus 364 ~~I~vg~~P~gia~spDg~~~lyv~n~~--s~~VsVID~~t~ 403 (426)
T 3c75_H 364 NKIELGHEIDSINVSQDAEPLLYALSAG--TQTLHIYDAATG 403 (426)
T ss_dssp EEEEEEEEECEEEECCSSSCEEEEEETT--TTEEEEEETTTC
T ss_pred EEEECCCCcCeEEEccCCCEEEEEEcCC--CCeEEEEECCCC
Confidence 4332222234457899999444444422 245888887654
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.03 E-value=4.3e-09 Score=116.96 Aligned_cols=206 Identities=8% Similarity=0.016 Sum_probs=131.0
Q ss_pred cceeecC-CCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCC-ccCCCccCceEEEEEccCCceEec
Q 003363 211 EGISWNS-DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWG-ETYAGKRQPSLFVININSGEVQAV 288 (826)
Q Consensus 211 ~~~~wSP-Dg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g-~~~~~~~~~~l~v~d~~~g~~~~l 288 (826)
.+++|+| +++.||..+.++....+.+.............+...+....|.|.-+ ..+++..+..|.+||+.++..+.+
T Consensus 123 ~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 202 (435)
T 4e54_B 123 TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVF 202 (435)
T ss_dssp EEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEE
T ss_pred EEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEE
Confidence 7899999 56778888777765433222211111223345666777888987434 445566678899999998877665
Q ss_pred cC-CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceec
Q 003363 289 KG-IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL 367 (826)
Q Consensus 289 ~~-~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L 367 (826)
.. ......+..++|+|||+. |+..+ .+..|+++|+ .+.....+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~----l~~g~---------------~dg~i~~wd~-----------------~~~~~~~~ 246 (435)
T 4e54_B 203 ASSDTINIWFCSLDVSASSRM----VVTGD---------------NVGNVILLNM-----------------DGKELWNL 246 (435)
T ss_dssp ECCSSCSCCCCCEEEETTTTE----EEEEC---------------SSSBEEEEES-----------------SSCBCCCS
T ss_pred eccCCCCccEEEEEECCCCCE----EEEEe---------------CCCcEeeecc-----------------CcceeEEE
Confidence 31 122334668899999996 66554 3347889998 66666777
Q ss_pred CCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCC
Q 003363 368 TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 447 (826)
Q Consensus 368 t~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~ 447 (826)
..+...+....|+|+|+.++.....+ ..|.+||+.+........... .+...+.
T Consensus 247 ~~h~~~v~~v~~~p~~~~~~~s~s~d----------~~v~iwd~~~~~~~~~~~~~~----------------~h~~~v~ 300 (435)
T 4e54_B 247 RMHKKKVTHVALNPCCDWFLATASVD----------QTVKIWDLRQVRGKASFLYSL----------------PHRHPVN 300 (435)
T ss_dssp BCCSSCEEEEEECTTCSSEEEEEETT----------SBCCEEETTTCCSSSCCSBCC----------------BCSSCEE
T ss_pred ecccceEEeeeecCCCceEEEEecCc----------ceeeEEecccccccceEEEee----------------ecccccc
Confidence 77777888999999998766555443 357788887654321110000 0112345
Q ss_pred CCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003363 448 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (826)
Q Consensus 448 ~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~ 481 (826)
.++|+|||+.|+ +...++. |..+|+.+++..
T Consensus 301 ~~~~spdg~~l~-s~~~D~~--i~iwd~~~~~~~ 331 (435)
T 4e54_B 301 AACFSPDGARLL-TTDQKSE--IRVYSASQWDCP 331 (435)
T ss_dssp ECCBCTTSSEEE-EEESSSC--EEEEESSSSSSE
T ss_pred ceeECCCCCeeE-EEcCCCE--EEEEECCCCccc
Confidence 678999999664 4444444 455577666543
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.03 E-value=6.8e-09 Score=115.13 Aligned_cols=148 Identities=14% Similarity=0.164 Sum_probs=91.9
Q ss_pred ceEEEEEccCCc----eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccch
Q 003363 273 PSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 348 (826)
Q Consensus 273 ~~l~v~d~~~g~----~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 348 (826)
..|.+||+.++. ...+ ......+..++|+|+++. +++++. .+..|.++|+..
T Consensus 254 g~i~i~d~~~~~~~~~~~~~--~~~~~~v~~i~~~p~~~~----~l~tg~--------------~dg~v~vwd~~~---- 309 (430)
T 2xyi_A 254 QKLMIWDTRNNNTSKPSHTV--DAHTAEVNCLSFNPYSEF----ILATGS--------------ADKTVALWDLRN---- 309 (430)
T ss_dssp SEEEEEETTCSCSSSCSEEE--ECCSSCEEEEEECSSCTT----EEEEEE--------------TTSEEEEEETTC----
T ss_pred CeEEEEECCCCCCCcceeEe--ecCCCCeEEEEeCCCCCC----EEEEEe--------------CCCeEEEEeCCC----
Confidence 679999998762 2333 234456788999999998 777662 234788999831
Q ss_pred hhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccce----e
Q 003363 349 ASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI----V 424 (826)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~----~ 424 (826)
.......+..+...+....|+|+|+.++.....+ ..|.+||+...+........ .
T Consensus 310 -----------~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~~ 368 (430)
T 2xyi_A 310 -----------LKLKLHSFESHKDEIFQVQWSPHNETILASSGTD----------RRLHVWDLSKIGEEQSTEDAEDGPP 368 (430)
T ss_dssp -----------TTSCSEEEECCSSCEEEEEECSSCTTEEEEEETT----------SCCEEEEGGGTTCCCCHHHHHHCCT
T ss_pred -----------CCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCC----------CcEEEEeCCCCccccCccccccCCc
Confidence 1233556666777889999999998765555432 45888888763321110000 0
Q ss_pred eeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003363 425 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (826)
Q Consensus 425 ~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vd 474 (826)
.+.... .+ +...+..+.|+|+++.++++...++...+|.++
T Consensus 369 ~~~~~~--------~~-h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 369 ELLFIH--------GG-HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp TEEEEC--------CC-CSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred ceEEEc--------CC-CCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 011100 00 112355788999999677777777777777764
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.4e-08 Score=103.91 Aligned_cols=252 Identities=10% Similarity=0.030 Sum_probs=143.9
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
....|+|+|||+.|+|+.... ..++.+..+++........... .++.|+|||+.++. +.
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~---~~i~~~~~~g~~~~~~~~~~~~----------~gl~~d~dG~l~v~--~~------ 104 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVG---RRVLGWREDGTVDVLLDATAFT----------NGNAVDAQQRLVHC--EH------ 104 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTT---TEEEEEETTSCEEEEEESCSCE----------EEEEECTTSCEEEE--ET------
T ss_pred CccCCeEeCCCCEEEEEECCC---CEEEEEeCCCCEEEEeCCCCcc----------ceeeECCCCCEEEE--EC------
Confidence 356799999999998886533 2455555545544333322222 68899999984443 21
Q ss_pred CccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCC---CCccceEEEeeCCCCCcc
Q 003363 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~---~~~~~~~~wSPDg~~~~~ 311 (826)
....|++++.+ |+.+.+..... ...+..++++|||+
T Consensus 105 ------------------------------------~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~---- 143 (305)
T 3dr2_A 105 ------------------------------------GRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA---- 143 (305)
T ss_dssp ------------------------------------TTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC----
T ss_pred ------------------------------------CCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC----
Confidence 12467888876 66555521111 12356789999997
Q ss_pred EEEEEeecCcc--eeeeeee-eccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEE
Q 003363 312 YLVFVGWSSET--RKLGIKY-CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVF 388 (826)
Q Consensus 312 ~lvf~~~~~~~--~~~g~~~-~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f 388 (826)
|+|+...... ...+... .......||++|. ++++.+.+. .......+.|||||+.|++
T Consensus 144 -l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~-----------------~~g~~~~~~-~~~~p~gl~~spdg~~lyv 204 (305)
T 3dr2_A 144 -IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP-----------------DGSPLQRMA-DLDHPNGLAFSPDEQTLYV 204 (305)
T ss_dssp -EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS-----------------SSCCCEEEE-EESSEEEEEECTTSSEEEE
T ss_pred -EEEeCcCCCccccccccccccccCCCeEEEEcC-----------------CCCcEEEEe-cCCCCcceEEcCCCCEEEE
Confidence 7775210000 0000000 0011247999997 667777665 4444566899999998877
Q ss_pred EeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeE
Q 003363 389 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 468 (826)
Q Consensus 389 ~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~ 468 (826)
...... ......|+++++.+++ +.. ...... . .. .....+.+.+||+ |+++. . .
T Consensus 205 ~~~~~~-----~~~~~~i~~~~~~~~~---l~~-~~~~~~---~-~~--------~~pdgi~~d~~G~-lwv~~--~--~ 258 (305)
T 3dr2_A 205 SQTPEQ-----GHGSVEITAFAWRDGA---LHD-RRHFAS---V-PD--------GLPDGFCVDRGGW-LWSSS--G--T 258 (305)
T ss_dssp EECCC--------CCCEEEEEEEETTE---EEE-EEEEEC---C-SS--------SCCCSEEECTTSC-EEECC--S--S
T ss_pred EecCCc-----CCCCCEEEEEEecCCC---ccC-CeEEEE---C-CC--------CCCCeEEECCCCC-EEEec--C--C
Confidence 664321 0123579999987643 111 001111 0 00 1234567889998 66553 2 2
Q ss_pred EEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEe
Q 003363 469 VIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 519 (826)
Q Consensus 469 ~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~ 519 (826)
.|+++|.++.....+..... .....|+++++.|++...+ .|+.++
T Consensus 259 gv~~~~~~g~~~~~~~~~~~-~~~~~f~~d~~~L~it~~~-----~l~~~~ 303 (305)
T 3dr2_A 259 GVCVFDSDGQLLGHIPTPGT-ASNCTFDQAQQRLFITGGP-----CLWMLP 303 (305)
T ss_dssp EEEEECTTSCEEEEEECSSC-CCEEEECTTSCEEEEEETT-----EEEEEE
T ss_pred cEEEECCCCCEEEEEECCCc-eeEEEEeCCCCEEEEEcCC-----eEEEEE
Confidence 48899987666666655443 4556777777777766543 455554
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.03 E-value=1.6e-08 Score=112.17 Aligned_cols=184 Identities=15% Similarity=0.087 Sum_probs=107.3
Q ss_pred ceEEEEEccCCce--------EeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEccc
Q 003363 273 PSLFVININSGEV--------QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 344 (826)
Q Consensus 273 ~~l~v~d~~~g~~--------~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 344 (826)
..|.+||+.++.. ..+ ......+..++|+|++.. +++++. ....|+++|+..
T Consensus 204 g~i~vwd~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~----~l~s~~--------------~dg~i~i~d~~~ 263 (430)
T 2xyi_A 204 HTICLWDINATPKEHRVIDAKNIF--TGHTAVVEDVAWHLLHES----LFGSVA--------------DDQKLMIWDTRN 263 (430)
T ss_dssp SCEEEEETTSCCBGGGEEECSEEE--CCCSSCEEEEEECSSCTT----EEEEEE--------------TTSEEEEEETTC
T ss_pred CeEEEEeCCCCCCCCceeccceee--cCCCCCEeeeEEeCCCCC----EEEEEe--------------CCCeEEEEECCC
Confidence 5688999876321 222 234446788999997766 666552 334788999831
Q ss_pred ccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCccccee
Q 003363 345 YKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 424 (826)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 424 (826)
.. .......+..+...+....|+|+|++++.....+ ..|.+||+.+......+
T Consensus 264 ~~-------------~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~d----------g~v~vwd~~~~~~~~~~---- 316 (430)
T 2xyi_A 264 NN-------------TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD----------KTVALWDLRNLKLKLHS---- 316 (430)
T ss_dssp SC-------------SSSCSEEEECCSSCEEEEEECSSCTTEEEEEETT----------SEEEEEETTCTTSCSEE----
T ss_pred CC-------------CCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCC----------CeEEEEeCCCCCCCeEE----
Confidence 00 0123444555666788999999999765555443 46999998764321100
Q ss_pred eeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCC------------CcEEEecCC-CCCee
Q 003363 425 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS------------GELLRITPA-ESNFS 491 (826)
Q Consensus 425 ~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~t------------g~~~~lt~~-~~~~~ 491 (826)
+.. ....+..+.|+|+++.++++...++...+|.++..+ .+....... ...+.
T Consensus 317 -----~~~---------h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 382 (430)
T 2xyi_A 317 -----FES---------HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS 382 (430)
T ss_dssp -----EEC---------CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEE
T ss_pred -----eec---------CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCce
Confidence 000 111345778999998777777766666666443211 123222222 23456
Q ss_pred eEEEeecCCEEEEEEeCCCCCCeEEEEee
Q 003363 492 WSLLTLDGDNIIAVSSSPVDVPQVKYGYF 520 (826)
Q Consensus 492 ~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 520 (826)
...|++++..++++.+... .|.+.++
T Consensus 383 ~~~~~p~~~~~l~s~s~dg---~i~iw~~ 408 (430)
T 2xyi_A 383 DFSWNPNEPWIICSVSEDN---IMQVWQM 408 (430)
T ss_dssp EEEECSSSTTEEEEEETTS---EEEEEEE
T ss_pred EEEECCCCCCEEEEEECCC---CEEEeEc
Confidence 6678888885555555332 3555554
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.02 E-value=8.8e-08 Score=105.69 Aligned_cols=244 Identities=15% Similarity=0.099 Sum_probs=154.5
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
.....||+++ .||...+. .+.+| ..++..++..+.. ..+.| .+++|||||+.||..+.+
T Consensus 108 ~~~l~wS~~n-~lAvgld~------tV~lWd~~tg~~~~~~~~~~-~~~~V------~sv~fspdg~~lasgs~D----- 168 (420)
T 4gga_A 108 LNLVDWSSGN-VLAVALDN------SVYLWSASSGDILQLLQMEQ-PGEYI------SSVAWIKEGNYLAVGTSS----- 168 (420)
T ss_dssp CBCEEECTTS-EEEEEETT------EEEEEETTTCCEEEEEECCS-TTCCE------EEEEECTTSSEEEEEETT-----
T ss_pred ceeEEECCCC-EEEEEeCC------EEEEEECCCCCEEEEEEecC-CCCcE------EEEEECCCCCEEEEEECC-----
Confidence 4568999864 77765432 46778 4566666665432 21223 899999999999886543
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (826)
..|.+||+.+++..... ......+. ++++|++. |
T Consensus 169 ---------------------------------------g~v~iWd~~~~~~~~~~-~~h~~~v~--~~s~~~~~----l 202 (420)
T 4gga_A 169 ---------------------------------------AEVQLWDVQQQKRLRNM-TSHSARVG--SLSWNSYI----L 202 (420)
T ss_dssp ---------------------------------------SCEEEEETTTTEEEEEE-CCCSSCEE--EEEEETTE----E
T ss_pred ---------------------------------------CeEEEEEcCCCcEEEEE-eCCCCceE--EEeeCCCE----E
Confidence 56899999988765441 22222333 45667775 5
Q ss_pred EEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccC
Q 003363 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (826)
Q Consensus 314 vf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~ 393 (826)
+..+ ....++.+|... .......+..+........|+|+|++|+..+.+
T Consensus 203 ~sgs---------------~d~~i~~~d~~~---------------~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D- 251 (420)
T 4gga_A 203 SSGS---------------RSGHIHHHDVRV---------------AEHHVATLSGHSQEVCGLRWAPDGRHLASGGND- 251 (420)
T ss_dssp EEEE---------------TTSEEEEEETTS---------------SSCEEEEEECCSSCEEEEEECTTSSEEEEEETT-
T ss_pred EEEe---------------CCCceeEeeecc---------------cceeeEEecccccceeeeeecCCCCeeeeeecc-
Confidence 5444 334677777621 223345566677778889999999998877655
Q ss_pred CCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003363 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (826)
Q Consensus 394 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~v 473 (826)
..+.+++..++........... . ....+..+.|+|++..++++.....+..|..+
T Consensus 252 ----------~~v~i~~~~~~~~~~~~~~~~~-----------~----~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iw 306 (420)
T 4gga_A 252 ----------NLVNVWPSAPGEGGWVPLQTFT-----------Q----HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 306 (420)
T ss_dssp ----------SCEEEEESSCCSSCSCCSEEEC-----------C----CSSCEEEEEECTTCTTEEEEEECTTTCEEEEE
T ss_pred ----------ccceEEeeccccccceeeeeec-----------c----cCCceeeeeeCCCcccEEEEEeecCCCEEEEE
Confidence 3478888877554221110000 0 11134467899988878776655556677888
Q ss_pred ECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003363 474 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (826)
Q Consensus 474 dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 522 (826)
|+.+++..........+....++++++.++......+. .|.+.+..+
T Consensus 307 d~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~--~I~iwd~~~ 353 (420)
T 4gga_A 307 NVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQN--QLVIWKYPT 353 (420)
T ss_dssp ETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTC--CEEEEETTT
T ss_pred eCCccccceeeccccceeeeeecCCCCeEEEEEecCCC--EEEEEECCC
Confidence 99999877766655556667889999988876644332 366666543
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.02 E-value=2.2e-07 Score=100.13 Aligned_cols=122 Identities=7% Similarity=-0.056 Sum_probs=71.4
Q ss_pred ceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeecc-CCCCCcccccCCCCCCccccCC
Q 003363 377 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA-EGDCFPGLYSSSILSNPWLSDG 455 (826)
Q Consensus 377 p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~g~~~~~~~~~~ws~Dg 455 (826)
..++|||+.++|.+.. ..++++|+.++....+. ..++.... ....+ ...+...+.++||+
T Consensus 205 ~~~~~~g~~~~~~~~~-----------~~v~v~d~~~~~~~~~~-----~~~~~~~~~~~~~~---~p~g~~~~a~~~dg 265 (361)
T 2oiz_A 205 IAPALDKDKAHFVSYY-----------GNVYSADFSGDEVKVDG-----PWSLLNDEDKAKNW---VPGGYNLVGLHRAS 265 (361)
T ss_dssp SCCEECSSEEEEEBTT-----------SEEEEEECSSSSCEEEE-----EEESCCHHHHHTTC---EECCSSCEEEETTT
T ss_pred EEecccCCEEEEEeCC-----------CeEEEEEecCCCceecc-----cccccCcccccccc---ccCCeeEEEEecCC
Confidence 3458999998887642 35999998765432110 00000000 00000 00122246789999
Q ss_pred CEEEEEEEeC--------CeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 456 CTMLLSSIWG--------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 456 ~~l~~~~~~~--------~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
+++|+..... ....++.+|++++++..-..... .....+++||+.++. ... ..|.++|..+.
T Consensus 266 ~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v-~n~----~~v~v~D~~t~ 335 (361)
T 2oiz_A 266 GRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLT-LDG----GNVNVYDISQP 335 (361)
T ss_dssp TEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEE-ECS----SCEEEEECSSS
T ss_pred CeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEE-eCC----CeEEEEECCCC
Confidence 9888765411 23589999999988765433333 556789999996654 332 66888886544
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.02 E-value=8e-08 Score=100.59 Aligned_cols=242 Identities=12% Similarity=0.071 Sum_probs=140.7
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~ 235 (826)
...|.|+|+++.|+++... ...++.++..+...........+ .++.|+|||+ |+.. .
T Consensus 15 ~Egp~w~~~~~~l~~~d~~---~~~i~~~d~~~~~~~~~~~~~~~----------~~i~~~~dG~-l~v~-~-------- 71 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIP---AKKVCRWDSFTKQVQRVTMDAPV----------SSVALRQSGG-YVAT-I-------- 71 (297)
T ss_dssp EEEEEEETTTTEEEEEETT---TTEEEEEETTTCCEEEEECSSCE----------EEEEEBTTSS-EEEE-E--------
T ss_pred ccCCeEECCCCEEEEEECC---CCEEEEEECCCCcEEEEeCCCce----------EEEEECCCCC-EEEE-E--------
Confidence 4578999999999887543 23566666333333344444333 7899999999 3332 1
Q ss_pred ccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCC---CCCccceEEEeeCCCCCccE
Q 003363 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP---KSLSVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~---~~~~~~~~~wSPDg~~~~~~ 312 (826)
...|+++|.++++.+.+.... ......+++++|||+
T Consensus 72 ------------------------------------~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~----- 110 (297)
T 3g4e_A 72 ------------------------------------GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGR----- 110 (297)
T ss_dssp ------------------------------------TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSC-----
T ss_pred ------------------------------------CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCC-----
Confidence 146899999998877663111 122456789999998
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
|++......... . ........||+++. + +....+.........+.|||||+.|++....
T Consensus 111 l~~~~~~~~~~~-~--~~~~~~~~l~~~d~-----------------~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~ 169 (297)
T 3g4e_A 111 YFAGTMAEETAP-A--VLERHQGALYSLFP-----------------D-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSL 169 (297)
T ss_dssp EEEEEEECCSBT-T--BCCTTCEEEEEECT-----------------T-SCEEEEEEEESBEEEEEECTTSCEEEEEEGG
T ss_pred EEEecCCccccc-c--cccCCCcEEEEEEC-----------------C-CCEEEEeeccccccceEEcCCCCEEEEecCC
Confidence 666553221100 0 00012346888885 3 3444444333445678999999998777654
Q ss_pred CCCCCCCCcccceEEEEeCC--CCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEE
Q 003363 393 SSVDSGAHSATDSLHRIDWP--TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l 470 (826)
. ..|+++|++ ++.. . ...+ +...+... ..+..+++.+||+ |+++.... ..|
T Consensus 170 ~----------~~i~~~~~d~~~G~~---~--~~~~--~~~~~~~~-------~~p~g~~~d~~G~-lwva~~~~--~~v 222 (297)
T 3g4e_A 170 S----------YSVDAFDYDLQTGQI---S--NRRS--VYKLEKEE-------QIPDGMCIDAEGK-LWVACYNG--GRV 222 (297)
T ss_dssp G----------TEEEEEEECTTTCCE---E--EEEE--EEECCGGG-------CEEEEEEEBTTSC-EEEEEETT--TEE
T ss_pred C----------CcEEEEeccCCCCcc---c--CcEE--EEECCCCC-------CCCCeeEECCCCC-EEEEEcCC--CEE
Confidence 2 568888874 3321 0 0011 11110000 1123567889996 66654332 358
Q ss_pred EEEECCCCcEEEe-cCCCCCeeeEEEe-ecCCEEEEEEeCC
Q 003363 471 ISVNVSSGELLRI-TPAESNFSWSLLT-LDGDNIIAVSSSP 509 (826)
Q Consensus 471 ~~vdl~tg~~~~l-t~~~~~~~~~~~s-~dg~~l~~~~s~~ 509 (826)
+++|.++|+.... ...........|. ++++.|+++....
T Consensus 223 ~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 223 IRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp EEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred EEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 8899987876543 3333345556777 7788877776553
|
| >2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase, hydrolase; 1.58A {Geobacillus stearothermophilus} PDB: 2ogs_A | Back alignment and structure |
|---|
Probab=99.02 E-value=4.3e-10 Score=126.17 Aligned_cols=133 Identities=19% Similarity=0.198 Sum_probs=92.2
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cchHHHHHHHHCC-cEEEEECCCCC-CCCchhhhhc--CCC
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVG-YSLLIVNYRGS-LGFGEEALQS--LPG 645 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~~~~~~~la~~G-~~Vl~~d~rG~-~g~G~~~~~~--~~~ 645 (826)
.|+..+ .+|.|.. ..++.|+||++|||++..... ........|+++| ++|+.+|||.. .||+...... ...
T Consensus 82 edcl~l--~v~~P~~--~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~~~~~~~~~ 157 (498)
T 2ogt_A 82 EDGLYL--NIWSPAA--DGKKRPVLFWIHGGAFLFGSGSSPWYDGTAFAKHGDVVVVTINYRMNVFGFLHLGDSFGEAYA 157 (498)
T ss_dssp SCCCEE--EEEESCS--SSCCEEEEEEECCSTTTSCCTTCGGGCCHHHHHHHTCEEEEECCCCHHHHCCCCTTTTCGGGT
T ss_pred CCCcEE--EEEecCC--CCCCCcEEEEEcCCccCCCCCCCCcCCHHHHHhCCCEEEEeCCCcCchhhccCchhhcccccc
Confidence 345444 5677862 456789999999998654332 2122346677766 99999999932 1233221100 011
Q ss_pred CCCcchHHHHHHHHHHHHHcC---CCCCCcEEEEEecchHHHHHHHHHhC--CCceeEEEecCCccc
Q 003363 646 KVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCN 707 (826)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~~~ 707 (826)
..+...+.|+.++++|+.++. ..|+++|.|+|+|+||.+++.++... ..+|+++|+.+|...
T Consensus 158 ~~~n~gl~D~~~al~wv~~~i~~fggdp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~ 224 (498)
T 2ogt_A 158 QAGNLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVLLSLPEASGLFRRAMLQSGSGS 224 (498)
T ss_dssp TGGGHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCCCCeEEEEEECHHHHHHHHHHhcccccchhheeeeccCCcc
Confidence 233456899999999998862 37899999999999999998887743 468999999998654
|
| >2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod glycosylated protein, hydrolase; HET: NAG FUC SCK SCU P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A* 1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A* 2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A* 2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ... | Back alignment and structure |
|---|
Probab=99.02 E-value=2.3e-10 Score=129.87 Aligned_cols=131 Identities=21% Similarity=0.170 Sum_probs=90.8
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccc-hHHHHHHHH-CCcEEEEECCCC-CCCCchhhhhcCCCCC
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKSLAFLSS-VGYSLLIVNYRG-SLGFGEEALQSLPGKV 647 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~-~~~~~~la~-~G~~Vl~~d~rG-~~g~G~~~~~~~~~~~ 647 (826)
.|+..+ .+|.|... ..++.|+||++|||++....... ......|++ .|++|+.+|||. ..||+... ..+...
T Consensus 94 edcl~l--~v~~P~~~-~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~la~~~g~vvv~~nYRlg~~Gf~~~~--~~~~~~ 168 (543)
T 2ha2_A 94 EDCLYL--NVWTPYPR-PASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFGFLALP--GSREAP 168 (543)
T ss_dssp SCCCEE--EEEEESSC-CSSCEEEEEEECCSTTTCCCTTSGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCT--TCSSCC
T ss_pred CcCCeE--EEeecCCC-CCCCCeEEEEECCCccccCCCCCCcCChHHHHhcCCEEEEEecccccccccccCC--CCCCCC
Confidence 345444 56778642 34568999999999865544321 122345654 799999999994 22332221 011223
Q ss_pred CcchHHHHHHHHHHHHHcC---CCCCCcEEEEEecchHHHHHHHHHhC--CCceeEEEecCCcc
Q 003363 648 GSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 706 (826)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~~ 706 (826)
+...+.|+.++++|+.++. ..|++||.|+|+|+||.++..++... +.+|+++|+.+|..
T Consensus 169 ~n~gl~D~~~al~wv~~~i~~fggDp~~v~i~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 232 (543)
T 2ha2_A 169 GNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (543)
T ss_dssp SCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCChhheEEEeechHHHHHHHHHhCcccHHhHhhheeccCCc
Confidence 3446899999999999862 37999999999999999998877643 46899999999853
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.01 E-value=3.9e-07 Score=97.37 Aligned_cols=127 Identities=13% Similarity=0.128 Sum_probs=71.5
Q ss_pred Cceec-CCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccC
Q 003363 376 FPRFS-PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 454 (826)
Q Consensus 376 ~p~~S-pDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~D 454 (826)
.+.|. +||+ ++|.+.. .+++++|..++....+. .. .+...... ..+--+ .+...+..++|
T Consensus 230 ~~~~~~~dG~-~~~vs~~-----------g~V~v~d~~~~~~~v~~-~~-~~~~~~~~-~~g~~p----~g~q~~a~~~~ 290 (386)
T 3sjl_D 230 HPAYSQKAGR-LVWPTYT-----------GKIHQIDLSSGDAKFLP-AV-EALTEAER-ADGWRP----GGWQQVAYHRA 290 (386)
T ss_dssp CCEEETTTTE-EEEEBTT-----------SEEEEEECTTSSCEECC-CE-ESSCHHHH-HTTEEE----CSSSCEEEETT
T ss_pred cceeEcCCCc-EEEEeCC-----------CEEEEEECCCCcceeec-ce-eccccccc-cccccC----CCcceeeECCC
Confidence 36774 7884 6677653 36999998775432111 00 00000000 000001 12235667899
Q ss_pred CCEEEEEEEeC-------CeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 455 GCTMLLSSIWG-------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 455 g~~l~~~~~~~-------~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
++++|+....+ ....++.+|+.++++.+-..-........+++|++..+++... .-..+.++|..+.
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~--~~~~VsViD~~t~ 364 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST--GDKTLYIHDAESG 364 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET--TTTEEEEEETTTC
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC--CCCeEEEEECCCC
Confidence 99999876532 2468999999998876433222223346889999855555443 2345888886544
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.8e-09 Score=120.80 Aligned_cols=296 Identities=10% Similarity=-0.020 Sum_probs=150.9
Q ss_pred hhcccceeEEEEEEeecCCCCcc---ceeecCCcceecccEEEEeCCC------CCeEEEEecCCCCCCeEEEEec--CC
Q 003363 120 LLANKRKKFMLSTVISKENENSV---TFQWAPFPVEMTGASAVVPSPS------GSKLLVVRNPENESPIQFELWS--QS 188 (826)
Q Consensus 120 ~~~~~~~~~l~~~~i~~~~~~~~---~lt~~~~~~~~~~~~~~~~SPd------G~~la~~~~~~~~~~~~~~i~~--~~ 188 (826)
+++......+.++++.+...... .+.... ..+...+|||+ |+.||..+.. + .+.+|+ .+
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~-----~~V~~v~wsp~~~~~~~~~~LAs~s~D--g---tvrlWd~~~~ 245 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSF-----GEVWDLKWHEGCHAPHLVGCLSFVSQE--G---TINFLEIIDN 245 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEEECC-----CSEEEEEECSSCCCSSSSCEEEEEETT--S---CEEEEECCCC
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEEecC-----CcEEEEEECCCCCCCCCCceEEEEecC--C---eEEEEEcCCC
Confidence 34455667777777754322111 122111 45888999997 5678776654 2 345552 12
Q ss_pred cee--EEEecC------CCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCC-CCCCccCCCCCCcc--
Q 003363 189 QLE--KEFHVP------QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKG-GSSDKDCNSWKGQG-- 257 (826)
Q Consensus 189 ~~~--~~~~~~------~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-- 257 (826)
... ....+. .+..+ .+.+++|+|++ .||..+.+++.. .|+...... ......+...+...
T Consensus 246 ~~~~~~~~~~~~p~~~l~~h~~------~v~sv~~s~~~-~lasgs~DgtV~--lWD~~~~~~~~~~~~~H~~~V~sv~~ 316 (524)
T 2j04_B 246 ATDVHVFKMCEKPSLTLSLADS------LITTFDFLSPT-TVVCGFKNGFVA--EFDLTDPEVPSFYDQVHDSYILSVST 316 (524)
T ss_dssp SSSSSEEECCCSCSEEECCTTT------CEEEEEESSSS-EEEEEETTSEEE--EEETTBCSSCSEEEECSSSCEEEEEE
T ss_pred ccccccceeecCceEEEEcCCC------CEEEEEecCCC-eEEEEeCCCEEE--EEECCCCCCceEEeecccccEEEEEE
Confidence 110 000000 11112 33799999975 688877776544 333221111 11123445555555
Q ss_pred eeecCC-CccCCCccCceEEEEEccCCceEe-ccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCC
Q 003363 258 DWEEDW-GETYAGKRQPSLFVININSGEVQA-VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 335 (826)
Q Consensus 258 ~~~~d~-g~~~~~~~~~~l~v~d~~~g~~~~-l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~ 335 (826)
.|.++. ....++..+..|.+||+.+++... +.+......+..++|+|||+. ++..+ ...
T Consensus 317 ~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~----l~s~~---------------~d~ 377 (524)
T 2j04_B 317 AYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYS----YIYSD---------------GAS 377 (524)
T ss_dssp ECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTE----EEEEC---------------SSS
T ss_pred EcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCe----EEEeC---------------CCC
Confidence 456663 223556667899999998765322 211111123567899999997 76655 223
Q ss_pred ceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCC
Q 003363 336 ALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (826)
Q Consensus 336 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~ 414 (826)
.|.++|+ ..+. ...+..+...+...+|||||+.|+-.+.+ ..|.+||+..+
T Consensus 378 tv~lwd~-----------------~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~D-----------gtv~lwd~~~~ 429 (524)
T 2j04_B 378 SLRAVPS-----------------RAAFAVHPLVSRETTITAIGVSRLHPMVLAGSAD-----------GSLIITNAARR 429 (524)
T ss_dssp EEEEEET-----------------TCTTCCEEEEECSSCEEEEECCSSCCBCEEEETT-----------TEEECCBSCSS
T ss_pred cEEEEEC-----------------cccccceeeecCCCceEEEEeCCCCCeEEEEECC-----------CEEEEEechHh
Confidence 5788887 3443 46677777888999999999988766544 45788886543
Q ss_pred CCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEE
Q 003363 415 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSL 494 (826)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~ 494 (826)
-........ .... ...+..++|+|||+.+-+ .+...++.++..+.....+......+....
T Consensus 430 ~~~~~~~~~-~~~~--------------~~~v~~v~~sp~g~~~~~----~~~~~~~~~~~~g~~~~~l~gh~~~V~~Va 490 (524)
T 2j04_B 430 LLHGIKNSS-ATQK--------------SLRLWKWDYSIKDDKYRI----DSSYEVYPLTVNDVSKAKIDAHGINITCTK 490 (524)
T ss_dssp TTTCC-------CC--------------CCEEEECBCCSSSCEEEE----CCCCCCCC-------------CCCSCCCEE
T ss_pred hccccccCc-ccee--------------eeEEEEeccCCCCCeEEc----cCCceecccccCCcceeeecCCCceEEEEE
Confidence 111100000 0000 001125678999984422 122233333332333445555545566678
Q ss_pred EeecCC
Q 003363 495 LTLDGD 500 (826)
Q Consensus 495 ~s~dg~ 500 (826)
|+|++.
T Consensus 491 fsp~~~ 496 (524)
T 2j04_B 491 WNETSA 496 (524)
T ss_dssp ECCSTT
T ss_pred CCCCCC
Confidence 999874
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.00 E-value=8.8e-09 Score=113.82 Aligned_cols=264 Identities=15% Similarity=0.089 Sum_probs=149.1
Q ss_pred eEEEEEEeecCCCCccc-eeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCcccccc
Q 003363 127 KFMLSTVISKENENSVT-FQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVY 205 (826)
Q Consensus 127 ~~l~~~~i~~~~~~~~~-lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~ 205 (826)
..+++|++.+ ++..+ ++...- ...+...+|||||++||.....+ .+.+|+-...+.+.... +..+
T Consensus 125 ~tV~lWd~~t--g~~~~~~~~~~~---~~~V~sv~fspdg~~lasgs~Dg-----~v~iWd~~~~~~~~~~~-~h~~--- 190 (420)
T 4gga_A 125 NSVYLWSASS--GDILQLLQMEQP---GEYISSVAWIKEGNYLAVGTSSA-----EVQLWDVQQQKRLRNMT-SHSA--- 190 (420)
T ss_dssp TEEEEEETTT--CCEEEEEECCST---TCCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEEC-CCSS---
T ss_pred CEEEEEECCC--CCEEEEEEecCC---CCcEEEEEECCCCCEEEEEECCC-----eEEEEEcCCCcEEEEEe-CCCC---
Confidence 4677777532 23322 222210 13489999999999999876543 46777322222222221 2211
Q ss_pred CCCcccceeecCCCCeEEEEeecCCCCCCCccCCCC-CCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc
Q 003363 206 ADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST-KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE 284 (826)
Q Consensus 206 ~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~ 284 (826)
...++++|++.|+..+.+..... |+.... ........+........|.++.....++..+..+.+||..+++
T Consensus 191 -----~v~~~s~~~~~l~sgs~d~~i~~--~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~ 263 (420)
T 4gga_A 191 -----RVGSLSWNSYILSSGSRSGHIHH--HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 263 (420)
T ss_dssp -----CEEEEEEETTEEEEEETTSEEEE--EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCS
T ss_pred -----ceEEEeeCCCEEEEEeCCCceeE--eeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccc
Confidence 23345567777777665543221 111000 0001112233333344566664444455567889999998775
Q ss_pred eEec--c-CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCC
Q 003363 285 VQAV--K-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 361 (826)
Q Consensus 285 ~~~l--~-~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 361 (826)
.... . .......+..++|+|++.. ++.++.. ..+..|..+|+ .+
T Consensus 264 ~~~~~~~~~~~~~~~V~~~~~~p~~~~----~la~~~g------------s~D~~I~iwd~-----------------~t 310 (420)
T 4gga_A 264 GGWVPLQTFTQHQGAVKAVAWCPWQSN----VLATGGG------------TSDRHIRIWNV-----------------CS 310 (420)
T ss_dssp SCSCCSEEECCCSSCEEEEEECTTCTT----EEEEEEC------------TTTCEEEEEET-----------------TT
T ss_pred ccceeeeeecccCCceeeeeeCCCccc----EEEEEee------------cCCCEEEEEeC-----------------Cc
Confidence 3211 0 0233446778899999998 8776421 12346888998 56
Q ss_pred CcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCccc
Q 003363 362 LPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGL 441 (826)
Q Consensus 362 ~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~ 441 (826)
+...........+....|+|+++.|+..+... ...|++||+.++.......+
T Consensus 311 ~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~---------d~~I~iwd~~~~~~v~~l~g------------------- 362 (420)
T 4gga_A 311 GACLSAVDAHSQVCSILWSPHYKELISGHGFA---------QNQLVIWKYPTMAKVAELKG------------------- 362 (420)
T ss_dssp TEEEEEEECSSCEEEEEEETTTTEEEEEECTT---------TCCEEEEETTTCCEEEEECC-------------------
T ss_pred cccceeeccccceeeeeecCCCCeEEEEEecC---------CCEEEEEECCCCcEEEEEcC-------------------
Confidence 65544444445677889999999998776432 25699999987654211111
Q ss_pred ccCCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003363 442 YSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (826)
Q Consensus 442 ~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~v 473 (826)
+...+..++|+|||+.| ++...++...||.+
T Consensus 363 H~~~V~~l~~spdg~~l-~S~s~D~tvriWdv 393 (420)
T 4gga_A 363 HTSRVLSLTMSPDGATV-ASAAADETLRLWRC 393 (420)
T ss_dssp CSSCEEEEEECTTSSCE-EEEETTTEEEEECC
T ss_pred CCCCEEEEEEcCCCCEE-EEEecCCeEEEEEC
Confidence 12245577899999865 55555666666644
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.4e-08 Score=107.23 Aligned_cols=110 Identities=15% Similarity=0.227 Sum_probs=75.2
Q ss_pred cccEEEEeCCC---CCeEEEEecCCCCCCeEEEEec--C-Ccee-EEEecCCCccccccCCCcccceeecCCCCeEEEEe
Q 003363 154 TGASAVVPSPS---GSKLLVVRNPENESPIQFELWS--Q-SQLE-KEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 226 (826)
Q Consensus 154 ~~~~~~~~SPd---G~~la~~~~~~~~~~~~~~i~~--~-~~~~-~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~ 226 (826)
..+...+|||| |++|+.....+ .+.+|+ . +... .... ...+.| ..+.|+|||+.|+..+
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~---~h~~~v------~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWAN-----DVRCWEVQDSGQTIPKAQQ---MHTGPV------LDVCWSDDGSKVFTAS 105 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTS-----EEEEEEECTTSCEEEEEEE---ECSSCE------EEEEECTTSSEEEEEE
T ss_pred CceEEEEEcCCCCCceEEEEECCCC-----cEEEEEcCCCCceeEEEec---cccCCE------EEEEECcCCCEEEEEc
Confidence 46899999999 68888766543 455662 1 3222 2222 122222 7999999999998764
Q ss_pred ecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEE--ee
Q 003363 227 EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVW--AP 304 (826)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~w--SP 304 (826)
.+ ..|.+||+.+++...+ ......+..+.| +|
T Consensus 106 ~d--------------------------------------------g~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~ 139 (368)
T 3mmy_A 106 CD--------------------------------------------KTAKMWDLSSNQAIQI--AQHDAPVKTIHWIKAP 139 (368)
T ss_dssp TT--------------------------------------------SEEEEEETTTTEEEEE--EECSSCEEEEEEEECS
T ss_pred CC--------------------------------------------CcEEEEEcCCCCceee--ccccCceEEEEEEeCC
Confidence 32 5799999999988776 445556788999 88
Q ss_pred CCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEc
Q 003363 305 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 342 (826)
Q Consensus 305 Dg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~ 342 (826)
|++. |+..+ .+..|+.+|+
T Consensus 140 ~~~~----l~~~~---------------~dg~i~vwd~ 158 (368)
T 3mmy_A 140 NYSC----VMTGS---------------WDKTLKFWDT 158 (368)
T ss_dssp SCEE----EEEEE---------------TTSEEEEECS
T ss_pred CCCE----EEEcc---------------CCCcEEEEEC
Confidence 8886 66655 2336778887
|
| >1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation, pancreas, glycoprotein, chimeric; 2.01A {Cavia porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B* 1n8s_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.8e-10 Score=126.99 Aligned_cols=112 Identities=12% Similarity=0.027 Sum_probs=81.5
Q ss_pred CCCcEEEEEcCCCCCCCCccchH-HHHHHHH-CCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSK-SLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~-~~~~la~-~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (826)
...|+||++||.+... ...|.. .+..|++ .||.|+++|+||.+...... . ... -....+|+.++++++.++..
T Consensus 68 ~~~~~vvllHG~~~s~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g~g~s~~~~--~-~~~-~~~~~~dl~~~i~~l~~~~g 142 (432)
T 1gpl_A 68 LNRKTRFIIHGFTDSG-ENSWLSDMCKNMFQVEKVNCICVDWKGGSKAQYSQ--A-SQN-IRVVGAEVAYLVQVLSTSLN 142 (432)
T ss_dssp TTSEEEEEECCTTCCT-TSHHHHHHHHHHHHHCCEEEEEEECHHHHTSCHHH--H-HHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEECCCCCCC-CchHHHHHHHHHHhcCCcEEEEEECccccCccchh--h-Hhh-HHHHHHHHHHHHHHHHHhcC
Confidence 4568999999976553 235655 6667765 79999999999844322110 0 000 01124678888888876544
Q ss_pred CCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCcc
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 706 (826)
++.+++.|+|||+||.+++.++.++|++++++++.+|..
T Consensus 143 ~~~~~i~lvGhSlGg~vA~~~a~~~p~~v~~iv~l~pa~ 181 (432)
T 1gpl_A 143 YAPENVHIIGHSLGAHTAGEAGKRLNGLVGRITGLDPAE 181 (432)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHTTTTCSSEEEEESCBC
T ss_pred CCcccEEEEEeCHHHHHHHHHHHhcccccceeEEecccc
Confidence 677899999999999999999999999999999888754
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=98.98 E-value=9.2e-08 Score=101.50 Aligned_cols=200 Identities=13% Similarity=0.106 Sum_probs=117.6
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe---cCCceeEEEecCCCccccccCCCcccceeecC--CCCeEEEEeec
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFHVPQTVHGSVYADGWFEGISWNS--DETLIAYVAEE 228 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSP--Dg~~ia~~~~~ 228 (826)
..+...+|||||++||.....+ .+.+| ......+....-....+.| ..++|+| |++.|+..+.+
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~v------~~~~~~~~~d~~~l~s~~~d 80 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSSDQ-----HIKVFKLDKDTSNWELSDSWRAHDSSI------VAIDWASPEYGRIIASASYD 80 (351)
T ss_dssp SCEEEEEECSSSSEEEEEETTS-----EEEEEEECSSSCCEEEEEEEECCSSCE------EEEEECCGGGCSEEEEEETT
T ss_pred cceeEEEEcCCCCEEEEeeCCC-----eEEEEECCCCCCcceecceeccCCCcE------EEEEEcCCCCCCEEEEEcCC
Confidence 4588999999999998876543 45556 2222212221111222333 7999999 69988876543
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc----------eEeccCCCCCCccc
Q 003363 229 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE----------VQAVKGIPKSLSVG 298 (826)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~----------~~~l~~~~~~~~~~ 298 (826)
..|.+||+.+++ ...+ ......+.
T Consensus 81 --------------------------------------------g~v~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~v~ 114 (351)
T 3f3f_A 81 --------------------------------------------KTVKLWEEDPDQEECSGRRWNKLCTL--NDSKGSLY 114 (351)
T ss_dssp --------------------------------------------SCEEEEEECTTSCTTSSCSEEEEEEE--CCCSSCEE
T ss_pred --------------------------------------------CeEEEEecCCCcccccccCcceeeee--cccCCcee
Confidence 468889988763 2333 23445678
Q ss_pred eEEEeeC--CCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceec--------
Q 003363 299 QVVWAPL--NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNL-------- 367 (826)
Q Consensus 299 ~~~wSPD--g~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~L-------- 367 (826)
.++|+|+ ++. |+..+ .+..|+++|+. +++ ...+
T Consensus 115 ~~~~~~~~~~~~----l~~~~---------------~dg~v~iwd~~-----------------~~~~~~~~~~~~~~~~ 158 (351)
T 3f3f_A 115 SVKFAPAHLGLK----LACLG---------------NDGILRLYDAL-----------------EPSDLRSWTLTSEMKV 158 (351)
T ss_dssp EEEECCGGGCSE----EEEEE---------------TTCEEEEEECS-----------------STTCTTCCEEEEEEES
T ss_pred EEEEcCCCCCcE----EEEec---------------CCCcEEEecCC-----------------ChHHhccccccccccc
Confidence 8999999 886 66655 33468888873 221 1111
Q ss_pred -----CCCCccccCceecCC---CCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCc
Q 003363 368 -----TESISSAFFPRFSPD---GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFP 439 (826)
Q Consensus 368 -----t~~~~~~~~p~~SpD---G~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 439 (826)
..+........|+|+ ++.|+..+.+. .+..++...+.... +.....
T Consensus 159 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~--------~~~~~~------- 212 (351)
T 3f3f_A 159 LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ-----------AIIYQRGKDGKLHV--------AAKLPG------- 212 (351)
T ss_dssp CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE-----------EEEEEECTTSCEEE--------EEECCC-------
T ss_pred cccccCCcccceeEEEeccCCCCCcEEEEecCCC-----------cEEEEccCCCceee--------eeecCC-------
Confidence 123445778899998 88777666442 24444433322110 000000
Q ss_pred ccccCCCCCCccccCCC---EEEEEEEeCCeEEEEEEE
Q 003363 440 GLYSSSILSNPWLSDGC---TMLLSSIWGSSQVIISVN 474 (826)
Q Consensus 440 g~~~~~~~~~~ws~Dg~---~l~~~~~~~~~~~l~~vd 474 (826)
+...+..+.|+|++. .++++...++...+|.++
T Consensus 213 --h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~ 248 (351)
T 3f3f_A 213 --HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT 248 (351)
T ss_dssp --CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEE
T ss_pred --CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCC
Confidence 112345678999983 466676667777777665
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.5e-08 Score=120.92 Aligned_cols=235 Identities=12% Similarity=0.129 Sum_probs=141.5
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCC--CCeEEEEeecC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEP 229 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPD--g~~ia~~~~~~ 229 (826)
..+...+|||||++|+.....+ .+.+|+ ++....+..+ .+..+.| ..+.|+|+ |+.|+..+.+
T Consensus 10 ~~V~~l~~s~dg~~latg~~dg-----~I~vwd~~~~~~~~~~~l-~~h~~~V------~~l~~s~~~~~~~l~s~s~D- 76 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSDK-----TIKIFEVEGETHKLIDTL-TGHEGPV------WRVDWAHPKFGTILASCSYD- 76 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETTT-----EEEEEEEETTEEEEEEEE-CCCSSCE------EEEEECCTTSCSEEEEEETT-
T ss_pred ceeEEEEECCCCCeEEEEECCC-----cEEEEecCCCCCccceec-cCCcCce------EEEEecCCCCCCEEEEEeCC-
Confidence 4588999999999998876543 456662 2222222222 2333344 89999999 8888887543
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEecc-CCCCCCccceEEEeeC--C
Q 003363 230 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPL--N 306 (826)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~~~~wSPD--g 306 (826)
..|.+||+.+++...+. -......+..++|+|+ |
T Consensus 77 -------------------------------------------g~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~ 113 (753)
T 3jro_A 77 -------------------------------------------GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG 113 (753)
T ss_dssp -------------------------------------------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC
T ss_pred -------------------------------------------CeEEEEECCCCcccccccccCCCCCeEEEEECCCCCC
Confidence 56999999988632221 0334457889999999 7
Q ss_pred CCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecC-----
Q 003363 307 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSP----- 381 (826)
Q Consensus 307 ~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~Sp----- 381 (826)
+. ++..+ .+..|..+|+... .......+..+...+....|+|
T Consensus 114 ~~----l~sgs---------------~dg~I~vwdl~~~--------------~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 114 PL----LLVAS---------------SDGKVSVVEFKEN--------------GTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp SE----EEEEE---------------TTSEEEEEECCSS--------------SCCCCEEEECCSSCEEEEEECCCC---
T ss_pred CE----EEEEe---------------CCCcEEEEEeecC--------------CCcceeEeecCCCceEEEEecCccccc
Confidence 76 66655 3347888887210 1113344556666788899999
Q ss_pred --------CCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCcccc
Q 003363 382 --------DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 453 (826)
Q Consensus 382 --------DG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~ 453 (826)
||+.|+..+.+ ..|++||+.++.... ........ +...+..+.|+|
T Consensus 161 ~~~~~~~~d~~~l~sgs~d-----------g~I~iwd~~~~~~~~------~~~~~~~~---------h~~~V~~l~~sp 214 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGAD-----------NLVKIWKYNSDAQTY------VLESTLEG---------HSDWVRDVAWSP 214 (753)
T ss_dssp ------CGGGCCEEEEETT-----------SCEEEEEEETTTTEE------EEEEEECC---------CSSCEEEEEECC
T ss_pred ccccccCCCCCEEEEEECC-----------CeEEEEeccCCcccc------eeeeeecC---------CCCcEEEEEecc
Confidence 68888776654 348888887653210 01111100 112345778999
Q ss_pred C---CCEEEEEEEeCCeEEEEEEECCCCcE---EEecC---CCCCeeeEEEeecCCEEEEEE
Q 003363 454 D---GCTMLLSSIWGSSQVIISVNVSSGEL---LRITP---AESNFSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 454 D---g~~l~~~~~~~~~~~l~~vdl~tg~~---~~lt~---~~~~~~~~~~s~dg~~l~~~~ 506 (826)
| |+ ++++...++...+| |+.+++. ..+.. ....+....|+++++.++...
T Consensus 215 ~~~~~~-~l~s~s~Dg~I~iw--d~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s 273 (753)
T 3jro_A 215 TVLLRS-YLASVSQDRTCIIW--TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 273 (753)
T ss_dssp CCSSSE-EEEEEESSSCEEEE--EESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEEC
T ss_pred CCCCCC-EEEEEecCCEEEEe--cCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEc
Confidence 9 65 55666656665665 4445421 11111 222344567889888665543
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.8e-08 Score=104.62 Aligned_cols=239 Identities=16% Similarity=0.110 Sum_probs=138.5
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
..+...+|+|+|++||..+..+ .+.+|+ .++..+....... ....++++++.|+..+.+...
T Consensus 68 ~~V~~v~~~~~~~~l~sgs~Dg-----~v~iw~~~~~~~~~~~~~h~~-----------~~~~~~~~~~~l~s~~~~~~~ 131 (318)
T 4ggc_A 68 EYISSVAWIKEGNYLAVGTSSA-----EVQLWDVQQQKRLRNMTSHSA-----------RVGSLSWNSYILSSGSRSGHI 131 (318)
T ss_dssp CCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEECCSS-----------CEEEEEEETTEEEEEETTSEE
T ss_pred CeEEEEEECCCCCEEEEEECCC-----cEEEeecCCceeEEEecCccc-----------eEEEeecCCCEEEEEecCCce
Confidence 3488999999999999876543 567783 3333333221111 345677888877776554422
Q ss_pred CCCCccCCCC-CCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEecc---CCCCCCccceEEEeeCCC
Q 003363 232 SKPTFSLGST-KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK---GIPKSLSVGQVVWAPLNE 307 (826)
Q Consensus 232 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~---~~~~~~~~~~~~wSPDg~ 307 (826)
.. +..... ........+........+.++....+++..+..|.+||+.+++..... .......+....|+|++.
T Consensus 132 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 209 (318)
T 4ggc_A 132 HH--HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 209 (318)
T ss_dssp EE--EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTST
T ss_pred Ee--eecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCC
Confidence 11 110000 000111122333334445555334445556788999999877532210 022233567889999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEE
Q 003363 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 387 (826)
Q Consensus 308 ~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~ 387 (826)
. ++..... .....|.++|. ...................|+|+++.++
T Consensus 210 ~----~~~~~~~------------~~~~~i~lwd~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 256 (318)
T 4ggc_A 210 N----VLATGGG------------TSDRHIRIWNV-----------------CSGACLSAVDAHSQVCSILWSPHYKELI 256 (318)
T ss_dssp T----EEEEEEC------------TTTCEEEEEET-----------------TTCCEEEEEECSSCEEEEEEETTTTEEE
T ss_pred c----EEEEEec------------CCCCEEEEEec-----------------ccccccccccceeeeeeeeecccccceE
Confidence 8 8765422 12336777887 4444444444555677889999999998
Q ss_pred EEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCe
Q 003363 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 467 (826)
Q Consensus 388 f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 467 (826)
..+... ...|++||+.+++......+ +...+..++|+|||+.| ++...++.
T Consensus 257 ~~sg~~---------d~~i~iwd~~~~~~~~~l~g-------------------H~~~V~~l~~spdg~~l-~S~s~D~~ 307 (318)
T 4ggc_A 257 SGHGFA---------QNQLVIWKYPTMAKVAELKG-------------------HTSRVLSLTMSPDGATV-ASAAADET 307 (318)
T ss_dssp EEECTT---------TCCEEEEETTTCCEEEEECC-------------------CSSCEEEEEECTTSSCE-EEEETTTE
T ss_pred EEEEcC---------CCEEEEEECCCCcEEEEEcC-------------------CCCCEEEEEEcCCCCEE-EEEecCCe
Confidence 776432 25699999987654221111 11234577899999855 56666666
Q ss_pred EEEEE
Q 003363 468 QVIIS 472 (826)
Q Consensus 468 ~~l~~ 472 (826)
..||.
T Consensus 308 v~iWd 312 (318)
T 4ggc_A 308 LRLWR 312 (318)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 66663
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=98.97 E-value=4.1e-08 Score=105.76 Aligned_cols=249 Identities=8% Similarity=0.028 Sum_probs=122.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEec-CCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
..+...+|||||+.||...+.. +.+|+.......... ..+. ..+.|+++++.++.++.... .
T Consensus 20 ~~V~~v~fs~dg~~la~g~~~~------~~iw~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~d~-~ 82 (355)
T 3vu4_A 20 NPVTDYEFNQDQSCLILSTLKS------FEIYNVHPVAHIMSQEMRHL----------SKVRMLHRTNYVAFVTGVKE-V 82 (355)
T ss_dssp CCCCEEEECTTSSEEEEECSSE------EEEEEETTEEEEEEEECSCC----------CEEEECTTSSEEEEECSSTT-E
T ss_pred CceEEEEECCCCCEEEEEcCCE------EEEEecCCcceeeeeecCCe----------EEEEEcCCCCEEEEEECCcc-E
Confidence 4588999999999998754332 457732222222211 1122 67889999998887654321 1
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCC-ceEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG-EVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g-~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
...|+.......... ..........+.++. +.......|++||+.++ +.... ... ..+..+++| +.
T Consensus 83 v~iWd~~~~~~~~~~-~~~~~v~~v~~~~~~---~~~~~~~~i~i~d~~~~~~~~~~--~~~--~~~~~~~s~--~~--- 149 (355)
T 3vu4_A 83 VHIWDDVKKQDVSRI-KVDAPVKDLFLSREF---IVVSYGDVISVFKFGNPWKRITD--DIR--FGGVCEFSN--GL--- 149 (355)
T ss_dssp EEEEETTTTEEEEEE-ECSSCEEEEEECSSE---EEEEETTEEEEEESSTTCCBSSC--CEE--EEEEEEEET--TE---
T ss_pred EEEEECCCCcEEEEE-ECCCceEEEEEcCCE---EEEEEcCEEEEEECCCCceeeEE--ecc--CCceEEEEc--cE---
Confidence 112221111110000 011111122233221 11112355777777665 22211 111 333445666 33
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEe
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLS 390 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s 390 (826)
+++.+. .....|.++|+............. ....-.. ...+..+...+...+|||||++|+..+
T Consensus 150 -la~~sg-------------~~~g~v~iwd~~~~~~~~~~~~~~-~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s 214 (355)
T 3vu4_A 150 -LVYSNE-------------FNLGQIHITKLQSSGSATTQDQGV-QQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS 214 (355)
T ss_dssp -EEEEES-------------SCTTCEEEEECCC-------------------CCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred -EEEeCC-------------CcCcEEEEEECCCCCccccccccc-cccccCcccEEEEccCCceEEEEECCCCCEEEEEe
Confidence 555521 133468888873110000000000 0000001 566777788899999999999988766
Q ss_pred ccCCCCCCCCcccce-EEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEE
Q 003363 391 AKSSVDSGAHSATDS-LHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (826)
Q Consensus 391 ~~~~~~~g~~~~~~~-l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (826)
.+ .. |.+||+.+++..... .. |.+...+..++|+|||+.|+ +...++...
T Consensus 215 ~d-----------~~~v~iwd~~~~~~~~~~----------~~-------g~h~~~v~~~~~s~~~~~l~-s~s~d~~v~ 265 (355)
T 3vu4_A 215 QD-----------GTIIRVFKTEDGVLVREF----------RR-------GLDRADVVDMKWSTDGSKLA-VVSDKWTLH 265 (355)
T ss_dssp TT-----------CSEEEEEETTTCCEEEEE----------EC-------TTCCSCEEEEEECTTSCEEE-EEETTCEEE
T ss_pred CC-----------CCEEEEEECCCCcEEEEE----------Ec-------CCCCCcEEEEEECCCCCEEE-EEECCCEEE
Confidence 54 44 889998876542111 00 00112345778999998664 444455555
Q ss_pred EEEEECCCC
Q 003363 470 IISVNVSSG 478 (826)
Q Consensus 470 l~~vdl~tg 478 (826)
+| |+..+
T Consensus 266 iw--~~~~~ 272 (355)
T 3vu4_A 266 VF--EIFND 272 (355)
T ss_dssp EE--ESSCC
T ss_pred EE--EccCC
Confidence 55 55443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-07 Score=100.48 Aligned_cols=235 Identities=14% Similarity=0.102 Sum_probs=135.5
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
...|+|+||++.++++...+ .+++.++ .+++. +.+.....+ ..+.|+|||+.++.. .
T Consensus 51 ~egp~~~~~~~~l~~~d~~~---~~i~~~d~~~~~~-~~~~~~~~v----------~~i~~~~dg~l~v~~--~------ 108 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILE---RELHELHLASGRK-TVHALPFMG----------SALAKISDSKQLIAS--D------ 108 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGG---TEEEEEETTTTEE-EEEECSSCE----------EEEEEEETTEEEEEE--T------
T ss_pred CcCCeEeCCCCEEEEEECCC---CEEEEEECCCCcE-EEEECCCcc----------eEEEEeCCCeEEEEE--C------
Confidence 45789999999998886432 3577777 34433 333333333 688999999865542 1
Q ss_pred CccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCC---CCccceEEEeeCCCCCcc
Q 003363 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~---~~~~~~~~wSPDg~~~~~ 311 (826)
..|+++|.++++.+.+..... ...+..+.++|||+
T Consensus 109 --------------------------------------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~---- 146 (326)
T 2ghs_A 109 --------------------------------------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA---- 146 (326)
T ss_dssp --------------------------------------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC----
T ss_pred --------------------------------------CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCC----
Confidence 249999999998876632211 12456789999997
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEec
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~ 391 (826)
|++....... ......||+++ + ++.+.+.........+.|||||+.|++...
T Consensus 147 -l~v~~~~~~~--------~~~~~~l~~~~-~------------------g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 147 -LWIGTMGRKA--------ETGAGSIYHVA-K------------------GKVTKLFADISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp -EEEEEEETTC--------CTTCEEEEEEE-T------------------TEEEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred -EEEEeCCCcC--------CCCceEEEEEe-C------------------CcEEEeeCCCcccCCeEEcCCCCEEEEEEC
Confidence 6665422110 01234688887 2 223333332233457899999999887654
Q ss_pred cCCCCCCCCcccceEEEEeCC--CC-CCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeE
Q 003363 392 KSSVDSGAHSATDSLHRIDWP--TN-GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 468 (826)
Q Consensus 392 ~~~~~~g~~~~~~~l~~~d~~--~~-~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~ 468 (826)
. ...|+++|++ ++ .... ...+.. ...... ....+.+.+||+ |+++... ..
T Consensus 199 ~----------~~~I~~~d~~~~~Gl~~~~----~~~~~~---~~~~~~-------~p~gi~~d~~G~-lwva~~~--~~ 251 (326)
T 2ghs_A 199 K----------VNRLMRVPLDARTGLPTGK----AEVFID---STGIKG-------GMDGSVCDAEGH-IWNARWG--EG 251 (326)
T ss_dssp T----------TCEEEEEEBCTTTCCBSSC----CEEEEE---CTTSSS-------EEEEEEECTTSC-EEEEEET--TT
T ss_pred C----------CCEEEEEEcccccCCcccC----ceEEEE---CCCCCC-------CCCeeEECCCCC-EEEEEeC--CC
Confidence 3 2579999986 43 2110 000101 000000 122466788886 6555432 23
Q ss_pred EEEEEECCCCcEEEecCCCCCeeeEEEe-ecCCEEEEEEeCC
Q 003363 469 VIISVNVSSGELLRITPAESNFSWSLLT-LDGDNIIAVSSSP 509 (826)
Q Consensus 469 ~l~~vdl~tg~~~~lt~~~~~~~~~~~s-~dg~~l~~~~s~~ 509 (826)
.|+++|.++..+..+...........|+ ++++.|++.....
T Consensus 252 ~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 252 AVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred EEEEECCCCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 6888898544455555443344555676 6777776665443
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.6e-08 Score=107.04 Aligned_cols=268 Identities=10% Similarity=-0.013 Sum_probs=141.3
Q ss_pred CCCC---cceEEEEEeechhhcccceeEEEEEEeecCCCCc-cceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCC
Q 003363 104 GNGN---GTQAMFSISQPNLLANKRKKFMLSTVISKENENS-VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESP 179 (826)
Q Consensus 104 ~s~d---g~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~-~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~ 179 (826)
++|| |+.++... ....+.++++...+... ..+.... ..+...+|+|||++|+.....+
T Consensus 47 ~~~~~~~g~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~l~s~~~dg---- 108 (368)
T 3mmy_A 47 FSPPTLPGNFLIAGS---------WANDVRCWEVQDSGQTIPKAQQMHT-----GPVLDVCWSDDGSKVFTASCDK---- 108 (368)
T ss_dssp ECCTTSSSEEEEEEE---------TTSEEEEEEECTTSCEEEEEEEECS-----SCEEEEEECTTSSEEEEEETTS----
T ss_pred EcCCCCCceEEEEEC---------CCCcEEEEEcCCCCceeEEEecccc-----CCEEEEEECcCCCEEEEEcCCC----
Confidence 4777 57665432 23456777775433322 2333333 4688999999999999876543
Q ss_pred eEEEEe--cCCceeEEEecCCCccccccCCCcccceee--cCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCC
Q 003363 180 IQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISW--NSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 255 (826)
Q Consensus 180 ~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~w--SPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (826)
.+.+| ..++..+.......+ ..+.| +||++.|+..+.+.... .|+............. ....
T Consensus 109 -~v~iwd~~~~~~~~~~~~~~~v----------~~~~~~~~~~~~~l~~~~~dg~i~--vwd~~~~~~~~~~~~~-~~~~ 174 (368)
T 3mmy_A 109 -TAKMWDLSSNQAIQIAQHDAPV----------KTIHWIKAPNYSCVMTGSWDKTLK--FWDTRSSNPMMVLQLP-ERCY 174 (368)
T ss_dssp -EEEEEETTTTEEEEEEECSSCE----------EEEEEEECSSCEEEEEEETTSEEE--EECSSCSSCSEEEECS-SCEE
T ss_pred -cEEEEEcCCCCceeeccccCce----------EEEEEEeCCCCCEEEEccCCCcEE--EEECCCCcEEEEEecC-CCce
Confidence 56677 344444433322233 78999 99999998887765433 2222111111111100 0000
Q ss_pred cceeecCCCccCCCccCceEEEEEccCCceEecc-CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCC
Q 003363 256 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 334 (826)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~ 334 (826)
...+.. ...+.......+.+|++......... ............+.+++......++..+ .+
T Consensus 175 ~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~d 237 (368)
T 3mmy_A 175 CADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS---------------IE 237 (368)
T ss_dssp EEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE---------------TT
T ss_pred EEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec---------------CC
Confidence 111111 12233345567888888765432221 1222234445566666654222233332 33
Q ss_pred CceEEEEcccccchhhhhhhhcCCCCCCcceecCCCC------------ccccCceecCCCCEEEEEeccCCCCCCCCcc
Q 003363 335 CALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI------------SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 402 (826)
Q Consensus 335 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~------------~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~ 402 (826)
..|.++|+..... ......+..+. ..+....|||||++|+..+.+
T Consensus 238 g~i~i~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d---------- 294 (368)
T 3mmy_A 238 GRVAIHYINPPNP-------------AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSD---------- 294 (368)
T ss_dssp SEEEEEESSCSCH-------------HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETT----------
T ss_pred CcEEEEecCCCCc-------------cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccC----------
Confidence 4677777631100 01112222222 147788999999998876654
Q ss_pred cceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEE
Q 003363 403 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 463 (826)
Q Consensus 403 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~ 463 (826)
..|++||+.++........ +...+..++|+|||+.|+..+.
T Consensus 295 -g~i~iwd~~~~~~~~~~~~-------------------~~~~v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 295 -GRFSFWDKDARTKLKTSEQ-------------------LDQPISACCFNHNGNIFAYASS 335 (368)
T ss_dssp -SCEEEEETTTTEEEEECCC-------------------CSSCEEEEEECTTSSCEEEEEC
T ss_pred -CeEEEEECCCCcEEEEecC-------------------CCCCceEEEECCCCCeEEEEec
Confidence 3589999887543211110 1123457789999997776654
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=4.6e-07 Score=103.18 Aligned_cols=334 Identities=7% Similarity=-0.059 Sum_probs=164.9
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~-~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (826)
++.|.....|..... ...+++++. ...+.. .+... .....+++||||++++..... + .+.
T Consensus 161 ~~~d~~~~~~V~~~~-------~~~V~viD~--~t~~v~~~i~~g------~~p~~v~~SpDGr~lyv~~~d--g--~V~ 221 (567)
T 1qks_A 161 NDWDLENLFSVTLRD-------AGQIALIDG--STYEIKTVLDTG------YAVHISRLSASGRYLFVIGRD--G--KVN 221 (567)
T ss_dssp SCCCGGGEEEEEETT-------TTEEEEEET--TTCCEEEEEECS------SCEEEEEECTTSCEEEEEETT--S--EEE
T ss_pred cccCCCceEEEEeCC-------CCeEEEEEC--CCCeEEEEEeCC------CCccceEECCCCCEEEEEcCC--C--eEE
Confidence 455655566655432 335666554 333322 22222 134578999999998765432 2 455
Q ss_pred EEec---CCceeEEEecCCCccccccCCCcccceeec----CCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCC----
Q 003363 183 ELWS---QSQLEKEFHVPQTVHGSVYADGWFEGISWN----SDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCN---- 251 (826)
Q Consensus 183 ~i~~---~~~~~~~~~~~~~~~g~v~~~~~~~~~~wS----PDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 251 (826)
.++. ..+....+...... ..+.+| |||++++...+.+... ..++....+..+...-..
T Consensus 222 viD~~~~t~~~v~~i~~G~~P----------~~ia~s~~~~pDGk~l~v~n~~~~~v-~ViD~~t~~~~~~i~~~~~~~~ 290 (567)
T 1qks_A 222 MIDLWMKEPTTVAEIKIGSEA----------RSIETSKMEGWEDKYAIAGAYWPPQY-VIMDGETLEPKKIQSTRGMTYD 290 (567)
T ss_dssp EEETTSSSCCEEEEEECCSEE----------EEEEECCSTTCTTTEEEEEEEETTEE-EEEETTTCCEEEEEECCEECTT
T ss_pred EEECCCCCCcEeEEEecCCCC----------ceeEEccccCCCCCEEEEEEccCCeE-EEEECCCCcEEEEEeccccccc
Confidence 5553 34444444433333 588999 7999888766543211 111211111000000000
Q ss_pred ------C-CCCcceeecCCCcc-CCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcce
Q 003363 252 ------S-WKGQGDWEEDWGET-YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETR 323 (826)
Q Consensus 252 ------~-~~~~~~~~~d~g~~-~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~ 323 (826)
. -......+++..+. +..+....|+++|..+.+...++.+........+.|+|||++ ++....
T Consensus 291 ~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~----~~va~~----- 361 (567)
T 1qks_A 291 EQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRY----FITAAN----- 361 (567)
T ss_dssp TCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCE----EEEEEG-----
T ss_pred cccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCE----EEEEeC-----
Confidence 0 00011112221111 111223556666655432211111112223446789999996 655542
Q ss_pred eeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC----CccccCce-ecCCCCEEEEEeccCCCCCC
Q 003363 324 KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES----ISSAFFPR-FSPDGKFLVFLSAKSSVDSG 398 (826)
Q Consensus 324 ~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~----~~~~~~p~-~SpDG~~l~f~s~~~~~~~g 398 (826)
....|..+|+ .+++......- ......+. +.|||..++.+++-.
T Consensus 362 ---------~sn~V~ViD~-----------------~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g----- 410 (567)
T 1qks_A 362 ---------ARNKLVVIDT-----------------KEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMG----- 410 (567)
T ss_dssp ---------GGTEEEEEET-----------------TTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSS-----
T ss_pred ---------CCCeEEEEEC-----------------CCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCC-----
Confidence 2237889998 55554322211 11112334 479888775555432
Q ss_pred CCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCC----eEEEEEEE
Q 003363 399 AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS----SQVIISVN 474 (826)
Q Consensus 399 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~----~~~l~~vd 474 (826)
...|.++|.++++.... ...++..+..+.. +...+..+|||+++|+...... ...|..+|
T Consensus 411 ----~~~Vsvid~~~~~~~~~---~~kvv~~i~~~g~---------g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 411 ----DDSVALIGTDPEGHPDN---AWKILDSFPALGG---------GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp ----SSEEEEEECCTTTCTTT---BTSEEEEEECSCS---------CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred ----CCeEEEecCCCCCCccc---cCEEEEEEecCCC---------CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 25688999877432211 1112332222211 1123456899999987642221 34677788
Q ss_pred CCCC-----c--EEEecC--------CCCCeeeEEEeecCCEEEEEEe-CCCCCCeEEEEeeccc
Q 003363 475 VSSG-----E--LLRITP--------AESNFSWSLLTLDGDNIIAVSS-SPVDVPQVKYGYFVDK 523 (826)
Q Consensus 475 l~tg-----~--~~~lt~--------~~~~~~~~~~s~dg~~l~~~~s-~~~~p~~l~~~~~~~~ 523 (826)
+++. . .+.+.. .........|+++|++++++.- .......|.++|..+.
T Consensus 475 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 475 IKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp GGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence 7765 1 134421 1223455689999999988753 3345677888885543
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.94 E-value=5.3e-08 Score=118.07 Aligned_cols=216 Identities=9% Similarity=0.084 Sum_probs=127.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
..+...+|||||+.||.....+ .+.+|+........... ..+.| ..++||| |++|+..+.+
T Consensus 18 ~~V~~lafspdg~~lAsgs~Dg-----~I~lw~~~~~~~~~~~~--~~~~V------~~l~fsp-g~~L~S~s~D----- 78 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAIATVTG-----EVHIYGQQQVEVVIKLE--DRSAI------KEMRFVK-GIYLVVINAK----- 78 (902)
T ss_dssp SCEEEEEEETTTTEEEEEETTS-----EEEEECSTTCEEEEECS--SCCCE------EEEEEET-TTEEEEEETT-----
T ss_pred CCcEEEEECCCCCEEEEEeCCC-----EEEEEeCCCcEEEEEcC--CCCCE------EEEEEcC-CCEEEEEECc-----
Confidence 3588999999999999876543 57778433333333222 12223 8999999 8877766432
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (826)
..|.+||+.+++.... ......+..++|+|||+. |
T Consensus 79 ---------------------------------------~~v~lWd~~~~~~~~~--~~~~~~V~~v~~sp~g~~----l 113 (902)
T 2oaj_A 79 ---------------------------------------DTVYVLSLYSQKVLTT--VFVPGKITSIDTDASLDW----M 113 (902)
T ss_dssp ---------------------------------------CEEEEEETTTCSEEEE--EECSSCEEEEECCTTCSE----E
T ss_pred ---------------------------------------CeEEEEECCCCcEEEE--EcCCCCEEEEEECCCCCE----E
Confidence 5799999998875433 223346788999999997 7
Q ss_pred EEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc------------eecCCCCccccCceecC
Q 003363 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV------------VNLTESISSAFFPRFSP 381 (826)
Q Consensus 314 vf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~------------~~Lt~~~~~~~~p~~Sp 381 (826)
+..+ .+..|.++|+ .++.. ..+..+.+.+...+|+|
T Consensus 114 ~sgs---------------~dg~V~lwd~-----------------~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp 161 (902)
T 2oaj_A 114 LIGL---------------QNGSMIVYDI-----------------DRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP 161 (902)
T ss_dssp EEEE---------------TTSCEEEEET-----------------TTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred EEEc---------------CCCcEEEEEC-----------------CCCccccceeccccccccccccCCCCeEEEEEcc
Confidence 6655 2346888887 33332 12344556788999999
Q ss_pred CCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCC--CCcccccCCCCCCccccCCCEEE
Q 003363 382 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD--CFPGLYSSSILSNPWLSDGCTML 459 (826)
Q Consensus 382 DG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~f~g~~~~~~~~~~ws~Dg~~l~ 459 (826)
++..++.....+ ..+ +||+.++......... ..+ -....+. .........+..++|+|||+.|+
T Consensus 162 ~~~~~l~~g~~d----------g~v-lWd~~~~~~~~~~~~~--~~~-g~~~~~~~~~~~~~h~~~V~~v~fspdg~~la 227 (902)
T 2oaj_A 162 RDIGTVLISYEY----------VTL-TYSLVENEIKQSFIYE--LPP-FAPGGDFSEKTNEKRTPKVIQSLYHPNSLHII 227 (902)
T ss_dssp TEEEEEEEECSS----------CEE-EEETTTTEEEEEECCC--BCT-TCCCSTTCCCTTSCBCCCEEEEEECTTSSEEE
T ss_pred CCCCEEEEEeCC----------CcE-EEECCCCceEEEEecc--cCC-cCCCcccccccccccCCCeEEEEEcCCCCEEE
Confidence 754444344332 457 9998875432110000 000 0000000 00000112355788999998654
Q ss_pred EEEEeCCeEEEEEEECCCCcEEE
Q 003363 460 LSSIWGSSQVIISVNVSSGELLR 482 (826)
Q Consensus 460 ~~~~~~~~~~l~~vdl~tg~~~~ 482 (826)
+...++. |..+|+.+|+...
T Consensus 228 -sgs~Dg~--i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 228 -TIHEDNS--LVFWDANSGHMIM 247 (902)
T ss_dssp -EEETTCC--EEEEETTTCCEEE
T ss_pred -EEECCCe--EEEEECCCCcEEE
Confidence 4444444 5556888887654
|
| >1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A* 1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A* 3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A* 2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ... | Back alignment and structure |
|---|
Probab=98.94 E-value=1.5e-09 Score=122.95 Aligned_cols=127 Identities=21% Similarity=0.181 Sum_probs=89.2
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccc-hHHHHHHHH-CCcEEEEECCCCC-CCCchhhhhcCCCCCCcchH
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKSLAFLSS-VGYSLLIVNYRGS-LGFGEEALQSLPGKVGSQDV 652 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~-~~~~~~la~-~G~~Vl~~d~rG~-~g~G~~~~~~~~~~~~~~~~ 652 (826)
+...+|.|... .++.|+||++|||++....... ......|++ .|++|+.+|||.. .||.... ..+...+...+
T Consensus 93 l~lnv~~P~~~--~~~~Pv~v~iHGGg~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~--~~~~~~~n~gl 168 (529)
T 1p0i_A 93 LYLNVWIPAPK--PKNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGALGFLALP--GNPEAPGNMGL 168 (529)
T ss_dssp CEEEEEEESSC--CSSEEEEEEECCSTTTSCCTTCGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCT--TCTTSCSCHHH
T ss_pred CeEEEeeCCCC--CCCCeEEEEECCCccccCCCCccccChHHHhccCCeEEEEecccccccccccCC--CCCCCcCcccH
Confidence 34457788742 3678999999998865543321 122355655 7999999999942 1222110 01112334458
Q ss_pred HHHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHhC--CCceeEEEecCCcc
Q 003363 653 NDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 706 (826)
Q Consensus 653 ~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~~ 706 (826)
.|+.++++|+.++ ...|+++|.|+|+|+||.++..++... ..+|+++|+.+|..
T Consensus 169 ~D~~~al~wv~~~i~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~ 227 (529)
T 1p0i_A 169 FDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSF 227 (529)
T ss_dssp HHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCT
T ss_pred HHHHHHHHHHHHHHHHhCCChhheEEeeccccHHHHHHHHhCccchHHHHHHHHhcCcc
Confidence 9999999999886 247999999999999999999887753 45899999999865
|
| >2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase; HET: TFC; 2.70A {Trichoplusia NI} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.2e-10 Score=130.09 Aligned_cols=126 Identities=22% Similarity=0.228 Sum_probs=87.6
Q ss_pred EEEEEEec-----CCCCCCCC----CcEEEEEcCCCCCCCCccc-hHHHHHHHHCCcEEEEECCCCCC-CCchhhhhcCC
Q 003363 576 FEAIFVSS-----SHKKDCSC----DPLIVVLHGGPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGSL-GFGEEALQSLP 644 (826)
Q Consensus 576 l~~~~~~P-----~~~~~~~~----~P~vv~~HGg~~~~~~~~~-~~~~~~la~~G~~Vl~~d~rG~~-g~G~~~~~~~~ 644 (826)
+...+|.| ... ..++ .|+||++|||++....... ......|+++|++|+.+|||... |+..... .
T Consensus 91 L~lnv~~P~~~~~~~~-~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~l~~~g~vvv~~nYRl~~~Gf~~~~~---~ 166 (551)
T 2fj0_A 91 IHANIHVPYYALPRDA-ADKNRFAGLPVLVFIHGGGFAFGSGDSDLHGPEYLVSKDVIVITFNYRLNVYGFLSLNS---T 166 (551)
T ss_dssp CEEEEEEEGGGCCCC---------CEEEEEEECCSTTTSCCSCTTTCBCTTGGGGSCEEEEECCCCHHHHHCCCSS---S
T ss_pred eEEEEEecCccccccc-cccCcCCCCCEEEEEcCCccccCCCcccccCHHHHHhCCeEEEEeCCcCCccccccCcc---c
Confidence 45567778 422 2333 8999999998865443321 12345677899999999999631 2211110 1
Q ss_pred CCCCcchHHHHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHh--CCCceeEEEecCCc
Q 003363 645 GKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPL 705 (826)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~ 705 (826)
...+...+.|+.++++|+.++ ...|+++|.|+|+|+||.+++.++.. .+.+|+++|+.+|.
T Consensus 167 ~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~ 232 (551)
T 2fj0_A 167 SVPGNAGLRDMVTLLKWVQRNAHFFGGRPDDVTLMGQSAGAAATHILSLSKAADGLFRRAILMSGT 232 (551)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCC
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhCCChhhEEEEEEChHHhhhhccccCchhhhhhhheeeecCC
Confidence 123345689999999999886 23799999999999999999988765 35789999999985
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-07 Score=101.35 Aligned_cols=188 Identities=14% Similarity=0.125 Sum_probs=109.1
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
++....++++++.++++...+ ..+.+|+ .++..........+ ..+.|++++. +... +...
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d----~~v~iWd~~~~~~~~~~~~~~~v----------~~v~~~~~~~--~~~~-~~~i- 121 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVK----EVVHIWDDVKKQDVSRIKVDAPV----------KDLFLSREFI--VVSY-GDVI- 121 (355)
T ss_dssp CCCEEEECTTSSEEEEECSST----TEEEEEETTTTEEEEEEECSSCE----------EEEEECSSEE--EEEE-TTEE-
T ss_pred CeEEEEEcCCCCEEEEEECCc----cEEEEEECCCCcEEEEEECCCce----------EEEEEcCCEE--EEEE-cCEE-
Confidence 467788999999998775443 2577884 34444333333222 7888988753 3322 2211
Q ss_pred CCCccCCCC-CCCCCCccCCCCCCcceeecCCCccCC--CccCceEEEEEccCCc-----------------eEeccCCC
Q 003363 233 KPTFSLGST-KGGSSDKDCNSWKGQGDWEEDWGETYA--GKRQPSLFVININSGE-----------------VQAVKGIP 292 (826)
Q Consensus 233 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~g~~~~--~~~~~~l~v~d~~~g~-----------------~~~l~~~~ 292 (826)
..|+.... +....... ..+...+.+ ..... +.....|.+||+.+++ +..+ ..
T Consensus 122 -~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~--~~ 193 (355)
T 3vu4_A 122 -SVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI--KA 193 (355)
T ss_dssp -EEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEE--CC
T ss_pred -EEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE--Ec
Confidence 12221111 11111100 001111221 11111 3456789999998876 4555 34
Q ss_pred CCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCc-eEEEEcccccchhhhhhhhcCCCCCCc-ceecC-C
Q 003363 293 KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA-LYAVRVSLYKSEASELELKESSSEDLP-VVNLT-E 369 (826)
Q Consensus 293 ~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~-l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt-~ 369 (826)
....+..++|+|||+. |+..+ .+.. |.++|+ .+++ ...+. .
T Consensus 194 h~~~v~~~~~s~~g~~----l~s~s---------------~d~~~v~iwd~-----------------~~~~~~~~~~~g 237 (355)
T 3vu4_A 194 HTNPIKMVRLNRKSDM----VATCS---------------QDGTIIRVFKT-----------------EDGVLVREFRRG 237 (355)
T ss_dssp CSSCEEEEEECTTSSE----EEEEE---------------TTCSEEEEEET-----------------TTCCEEEEEECT
T ss_pred cCCceEEEEECCCCCE----EEEEe---------------CCCCEEEEEEC-----------------CCCcEEEEEEcC
Confidence 4557889999999997 77665 3346 888898 4444 44555 2
Q ss_pred -CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 370 -SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 370 -~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
+...+...+|||||++|+..+.+ ..|.+||+..+.
T Consensus 238 ~h~~~v~~~~~s~~~~~l~s~s~d-----------~~v~iw~~~~~~ 273 (355)
T 3vu4_A 238 LDRADVVDMKWSTDGSKLAVVSDK-----------WTLHVFEIFNDQ 273 (355)
T ss_dssp TCCSCEEEEEECTTSCEEEEEETT-----------CEEEEEESSCCS
T ss_pred CCCCcEEEEEECCCCCEEEEEECC-----------CEEEEEEccCCC
Confidence 56678899999999998877654 458889987654
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=6.3e-08 Score=105.73 Aligned_cols=224 Identities=13% Similarity=0.071 Sum_probs=128.7
Q ss_pred cccEEEEeCC-CCCeEEEEecCCCCCCeEEEEec--CCceeEEEec------C----CCccccccCCCcccceeecC-CC
Q 003363 154 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWS--QSQLEKEFHV------P----QTVHGSVYADGWFEGISWNS-DE 219 (826)
Q Consensus 154 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~------~----~~~~g~v~~~~~~~~~~wSP-Dg 219 (826)
..+...+||| ||++||.....+ .+.+|+ .+........ . ....+. +..+.|+| ++
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~ 112 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDG-----VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS------VETVQWYPHDT 112 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTS-----CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC------EEEEEECTTCT
T ss_pred CcEEEEEEecCCCCEEEEEcCCC-----eEEEEECCCCcccceEeccccccccccccccCCCc------EEEEEEccCCC
Confidence 4588999999 999998876543 355552 2222111110 0 112222 37999999 66
Q ss_pred CeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccce
Q 003363 220 TLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQ 299 (826)
Q Consensus 220 ~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~ 299 (826)
+.|+..+. ...|.+||+.+++.... ......+..
T Consensus 113 ~~l~s~~~--------------------------------------------d~~i~iwd~~~~~~~~~--~~~~~~~~~ 146 (408)
T 4a11_B 113 GMFTSSSF--------------------------------------------DKTLKVWDTNTLQTADV--FNFEETVYS 146 (408)
T ss_dssp TCEEEEET--------------------------------------------TSEEEEEETTTTEEEEE--EECSSCEEE
T ss_pred cEEEEEeC--------------------------------------------CCeEEEeeCCCCcccee--ccCCCceee
Confidence 66666532 25799999999887665 334445678
Q ss_pred EEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCcee
Q 003363 300 VVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRF 379 (826)
Q Consensus 300 ~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~ 379 (826)
+.|+|++.. .+.|+..+ ....|+++|+. .......+..+...+....|
T Consensus 147 ~~~~~~~~~-~~~~~~~~---------------~~~~v~~~d~~----------------~~~~~~~~~~~~~~v~~~~~ 194 (408)
T 4a11_B 147 HHMSPVSTK-HCLVAVGT---------------RGPKVQLCDLK----------------SGSCSHILQGHRQEILAVSW 194 (408)
T ss_dssp EEECSSCSS-CCEEEEEE---------------SSSSEEEEESS----------------SSCCCEEECCCCSCEEEEEE
T ss_pred eEeecCCCC-CcEEEEEc---------------CCCeEEEEeCC----------------CcceeeeecCCCCcEEEEEE
Confidence 889986542 01155444 33478899982 23345566667777889999
Q ss_pred cCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEE
Q 003363 380 SPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 459 (826)
Q Consensus 380 SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~ 459 (826)
+|||+++++....+ ..|.+||+.++................. ....+. .....+..+.|+|||+.|+
T Consensus 195 ~~~~~~ll~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~ 261 (408)
T 4a11_B 195 SPRYDYILATASAD----------SRVKLWDVRRASGCLITLDQHNGKKSQA--VESANT-AHNGKVNGLCFTSDGLHLL 261 (408)
T ss_dssp CSSCTTEEEEEETT----------SCEEEEETTCSSCCSEECCTTTTCSCCC--TTTSSC-SCSSCEEEEEECTTSSEEE
T ss_pred CCCCCcEEEEEcCC----------CcEEEEECCCCCccccccccccccccee--eccccc-cccCceeEEEEcCCCCEEE
Confidence 99999755454432 4588999877543111100000000000 000000 0222455778999999775
Q ss_pred EEEEeCCeEEEEEEECCCCcEEE
Q 003363 460 LSSIWGSSQVIISVNVSSGELLR 482 (826)
Q Consensus 460 ~~~~~~~~~~l~~vdl~tg~~~~ 482 (826)
.. ..++ .|..+|+.+++...
T Consensus 262 ~~-~~dg--~i~vwd~~~~~~~~ 281 (408)
T 4a11_B 262 TV-GTDN--RMRLWNSSNGENTL 281 (408)
T ss_dssp EE-ETTS--CEEEEETTTCCBCC
T ss_pred Ee-cCCC--eEEEEECCCCccce
Confidence 44 3333 46666887776543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.93 E-value=4.5e-07 Score=101.26 Aligned_cols=291 Identities=11% Similarity=0.068 Sum_probs=162.6
Q ss_pred hhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEec
Q 003363 119 NLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHV 196 (826)
Q Consensus 119 ~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~ 196 (826)
-+..+.....+.++++.+. .....+.... ..+...+|+|++ .|+.....+ .+.+|+ .++......
T Consensus 134 ~l~sgs~dg~i~vwd~~~~-~~~~~~~~h~-----~~V~~l~~~~~~-~l~s~s~dg-----~i~vwd~~~~~~~~~~~- 200 (464)
T 3v7d_B 134 YVITGADDKMIRVYDSINK-KFLLQLSGHD-----GGVWALKYAHGG-ILVSGSTDR-----TVRVWDIKKGCCTHVFE- 200 (464)
T ss_dssp EEEEEETTSCEEEEETTTT-EEEEEECCCS-----SCEEEEEECSTT-EEEEEETTS-----CEEEEETTTTEEEEEEC-
T ss_pred EEEEEcCCCcEEEEECCCC-cEEEEEeCCC-----cCEEEEEEcCCC-EEEEEeCCC-----CEEEEECCCCcEEEEEC-
Confidence 3444455667777775322 2222333222 568999999999 666554432 456673 333333332
Q ss_pred CCCccccccCCCcccceeec--CCCCeEEEEeecCCCCCCCccCCCCCCCCC-----------------------CccCC
Q 003363 197 PQTVHGSVYADGWFEGISWN--SDETLIAYVAEEPSPSKPTFSLGSTKGGSS-----------------------DKDCN 251 (826)
Q Consensus 197 ~~~~~g~v~~~~~~~~~~wS--PDg~~ia~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~ 251 (826)
+..+.| ..+.|+ ||++.|+..+.+..... |+......... ...+.
T Consensus 201 --~h~~~v------~~l~~~~~~~~~~l~s~s~d~~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (464)
T 3v7d_B 201 --GHNSTV------RCLDIVEYKNIKYIVTGSRDNTLHV--WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 270 (464)
T ss_dssp --CCSSCE------EEEEEEESSSCEEEEEEETTSCEEE--EECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred --CCCCcc------EEEEEecCCCCCEEEEEcCCCcEEE--eeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence 222222 677777 68888888877664432 22111111000 00010
Q ss_pred CCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeec
Q 003363 252 SWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCY 331 (826)
Q Consensus 252 ~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~ 331 (826)
... ..+.++....+++..+..|.+||+.+++..... ......+..++|+|||+. |+..+
T Consensus 271 ~~v--~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~----l~sg~-------------- 329 (464)
T 3v7d_B 271 ASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL-SGHTDRIYSTIYDHERKR----CISAS-------------- 329 (464)
T ss_dssp SCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEETTTTE----EEEEE--------------
T ss_pred ceE--EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCCEEEEEEcCCCCE----EEEEe--------------
Confidence 000 112333233445556788999999888765431 233456788999999997 76655
Q ss_pred cCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEe
Q 003363 332 NRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 410 (826)
Q Consensus 332 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d 410 (826)
.+..|+.+|+ .+++ ...+..+...+....|+ +++|+..+.+ ..|.+||
T Consensus 330 -~dg~i~vwd~-----------------~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~d-----------g~v~vwd 378 (464)
T 3v7d_B 330 -MDTTIRIWDL-----------------ENGELMYTLQGHTALVGLLRLS--DKFLVSAAAD-----------GSIRGWD 378 (464)
T ss_dssp -TTSCEEEEET-----------------TTTEEEEEECCCSSCEEEEEEC--SSEEEEEETT-----------SEEEEEE
T ss_pred -CCCcEEEEEC-----------------CCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCC-----------CcEEEEE
Confidence 3347889998 4444 45666666667777776 5677666544 4589999
Q ss_pred CCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCe
Q 003363 411 WPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNF 490 (826)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~ 490 (826)
+.++...... . .........|++|++.|+.. . ++ .+..+|+.+|+...........
T Consensus 379 ~~~~~~~~~~------------~--------~~~~~~~~~~~~~~~~l~~~-~-dg--~i~iwd~~~g~~~~~~~~~~~~ 434 (464)
T 3v7d_B 379 ANDYSRKFSY------------H--------HTNLSAITTFYVSDNILVSG-S-EN--QFNIYNLRSGKLVHANILKDAD 434 (464)
T ss_dssp TTTCCEEEEE------------E--------CTTCCCEEEEEECSSEEEEE-E-TT--EEEEEETTTCCEEESCTTTTCS
T ss_pred CCCCceeeee------------c--------CCCCccEEEEEeCCCEEEEe-c-CC--eEEEEECCCCcEEehhhccCCC
Confidence 8774421100 0 00122355789999866543 3 33 5777798899877632222222
Q ss_pred eeEEEeecCCEEEEEEeC
Q 003363 491 SWSLLTLDGDNIIAVSSS 508 (826)
Q Consensus 491 ~~~~~s~dg~~l~~~~s~ 508 (826)
....++.+++.+++..++
T Consensus 435 ~v~~v~~~~~~l~~~~~~ 452 (464)
T 3v7d_B 435 QIWSVNFKGKTLVAAVEK 452 (464)
T ss_dssp EEEEEEEETTEEEEEEEE
T ss_pred cEEEEEecCCEEEEEEEe
Confidence 333455567777666654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.92 E-value=3.5e-08 Score=106.02 Aligned_cols=237 Identities=14% Similarity=0.104 Sum_probs=126.7
Q ss_pred eeEEEEEEeecCCCCccceeecCCcceecccEEEEeCC-CCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccc
Q 003363 126 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP-SGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHG 202 (826)
Q Consensus 126 ~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g 202 (826)
...+.++++... .....+.... ..+....|+| +|+.|+.....+ .+.+|+ .++............+
T Consensus 94 dg~i~v~d~~~~-~~~~~~~~~~-----~~i~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~ 162 (366)
T 3k26_A 94 RGIIRIINPITM-QCIKHYVGHG-----NAINELKFHPRDPNLLLSVSKDH-----ALRLWNIQTDTLVAIFGGVEGHRD 162 (366)
T ss_dssp TCEEEEECTTTC-CEEEEEESCC-----SCEEEEEECSSCTTEEEEEETTS-----CEEEEETTTTEEEEEECSTTSCSS
T ss_pred CCEEEEEEchhc-eEeeeecCCC-----CcEEEEEECCCCCCEEEEEeCCC-----eEEEEEeecCeEEEEecccccccC
Confidence 446677765322 2223333222 4688999999 899888876543 456663 3333333311122222
Q ss_pred cccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccC
Q 003363 203 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS 282 (826)
Q Consensus 203 ~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~ 282 (826)
.| ..+.|+|||+.|+..+.+ ..|.+||+.+
T Consensus 163 ~v------~~~~~~~~~~~l~~~~~d--------------------------------------------g~i~i~d~~~ 192 (366)
T 3k26_A 163 EV------LSADYDLLGEKIMSCGMD--------------------------------------------HSLKLWRINS 192 (366)
T ss_dssp CE------EEEEECTTSSEEEEEETT--------------------------------------------SCEEEEESCS
T ss_pred ce------eEEEECCCCCEEEEecCC--------------------------------------------CCEEEEECCC
Confidence 33 799999999999887543 3466666665
Q ss_pred CceEec-c--------------------------CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCC
Q 003363 283 GEVQAV-K--------------------------GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 335 (826)
Q Consensus 283 g~~~~l-~--------------------------~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~ 335 (826)
++.... . .......+..+.|+ ++. |+..+ .+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~----l~~~~---------------~d~ 251 (366)
T 3k26_A 193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL----ILSKS---------------CEN 251 (366)
T ss_dssp HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTE----EEEEC---------------SSS
T ss_pred CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCE----EEEEe---------------cCC
Confidence 542211 0 01133456678888 555 55554 234
Q ss_pred ceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCC--CCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 336 ALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPD--GKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 336 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpD--G~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
.|.++|+......-.... ...........+..+...+....|+|| |++|+..+.+ ..|++||+.+
T Consensus 252 ~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d-----------g~i~vwd~~~ 318 (366)
T 3k26_A 252 AIVCWKPGKMEDDIDKIK--PSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQV-----------GKLYVWDLEV 318 (366)
T ss_dssp EEEEEEESSTTCCGGGCC--TTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTT-----------SCEEEEECCS
T ss_pred EEEEEeCCCccccccccc--cCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecC-----------CcEEEEECCC
Confidence 677888732100000000 000000113344445566888999999 9988866544 3589999888
Q ss_pred CCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003363 414 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (826)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (826)
++..... ...+.... ....+..+.|+|||+.|+ +...++...+|
T Consensus 319 ~~~~~~~------~~~~~~~~-------~~~~v~~~~~s~~~~~l~-s~~~dg~i~iw 362 (366)
T 3k26_A 319 EDPHKAK------CTTLTHHK-------CGAAIRQTSFSRDSSILI-AVCDDASIWRW 362 (366)
T ss_dssp SSGGGCE------EEEECCTT-------CCSCEEEEEECTTSSEEE-EEETTSEEEEE
T ss_pred CCCcccc------ceEEcccc-------cCCceEEEEeCCCCCeEE-EEeCCCEEEEE
Confidence 6542110 00000000 012345788999999665 44445544444
|
| >1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A {Bacillus subtilis} SCOP: c.69.1.22 | Back alignment and structure |
|---|
Probab=98.91 E-value=3.3e-09 Score=106.57 Aligned_cols=199 Identities=13% Similarity=0.038 Sum_probs=108.5
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.+.|+++||.+.. ...|......|.. |.|+.+|++| ++. ...|+.+.++.+. ...
T Consensus 17 ~~~l~~~hg~~~~--~~~~~~~~~~l~~--~~v~~~d~~g---~~~-------------~~~~~~~~i~~~~-----~~~ 71 (230)
T 1jmk_C 17 EQIIFAFPPVLGY--GLMYQNLSSRLPS--YKLCAFDFIE---EED-------------RLDRYADLIQKLQ-----PEG 71 (230)
T ss_dssp SEEEEEECCTTCC--GGGGHHHHHHCTT--EEEEEECCCC---STT-------------HHHHHHHHHHHHC-----CSS
T ss_pred CCCEEEECCCCCc--hHHHHHHHHhcCC--CeEEEecCCC---HHH-------------HHHHHHHHHHHhC-----CCC
Confidence 4779999997654 4567777777754 9999999997 321 2445555555431 135
Q ss_pred cEEEEEecchHHHHHHHHHhC---CCceeEEEecCCccchh--hhccCCCCCCchhhhhccCcCCccCCCCCChhhHH--
Q 003363 672 KVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCNLA--LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLT-- 744 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~---p~~~~a~v~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 744 (826)
++.++|||+||.++..++.+. ++.++++++.++..... .+..................... +..........
T Consensus 72 ~~~l~G~S~Gg~ia~~~a~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 150 (230)
T 1jmk_C 72 PLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNVNRDNEA-LNSEAVKHGLKQK 150 (230)
T ss_dssp CEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCEECCCC--------CCHHHHHHHTTTCSG-GGSHHHHHHHHHH
T ss_pred CeEEEEECHhHHHHHHHHHHHHHcCCCccEEEEECCCCCCcccccccccHHHHHHHHHhcChhhhh-hhhHHHHHHHHHH
Confidence 799999999999999998765 36788888877653211 00000000000000000000000 00000000000
Q ss_pred --HHhhcCc-ccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhC-CCCEEEEEeCCCCC--CCCCCCCHHHHHHHHH
Q 003363 745 --RFHSKSP-ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK-GVETKVIVFPNDVH--GIERPQSDFESFLNIG 818 (826)
Q Consensus 745 --~~~~~sp-~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~-g~~~~~~~~p~~~H--~~~~~~~~~~~~~~i~ 818 (826)
.+..... .....++++|+++++|++|..++. .. ..+.+. ...++++.+++ +| .+. .+....+...+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~-~~----~~w~~~~~~~~~~~~i~g-~H~~~~~-~~~~~~~~~~i~ 223 (230)
T 1jmk_C 151 THAFYSYYVNLISTGQVKADIDLLTSGADFDIPE-WL----ASWEEATTGAYRMKRGFG-THAEMLQ-GETLDRNAGILL 223 (230)
T ss_dssp HHHHHHHHHHCCCCSCBSSEEEEEECSSCCCCCT-TE----ECSGGGBSSCEEEEECSS-CGGGTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccccccccEEEEEeCCCCCCcc-cc----chHHHhcCCCeEEEEecC-ChHHHcC-cHhHHHHHHHHH
Confidence 0000100 123467889999999999998862 21 122221 23588999997 88 443 333334556666
Q ss_pred HHHHH
Q 003363 819 LWFKK 823 (826)
Q Consensus 819 ~w~~~ 823 (826)
+|+.+
T Consensus 224 ~~l~~ 228 (230)
T 1jmk_C 224 EFLNT 228 (230)
T ss_dssp HHHTC
T ss_pred HHHhh
Confidence 66643
|
| >1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase, neurotransmitter cleavage, catalytic triad, alpha/beta hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP: c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A* 1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A 1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A* 1vxr_A* ... | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-09 Score=122.60 Aligned_cols=127 Identities=21% Similarity=0.183 Sum_probs=89.4
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccc-hHHHHHHH-HCCcEEEEECCCCC-CCCchhhhhcCCCCCCcchH
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKSLAFLS-SVGYSLLIVNYRGS-LGFGEEALQSLPGKVGSQDV 652 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~-~~~~~~la-~~G~~Vl~~d~rG~-~g~G~~~~~~~~~~~~~~~~ 652 (826)
+...+|.|... .++.|+||++|||++....... ......|+ +.|++|+.+|||.. .||.... ..+...+...+
T Consensus 95 l~lnv~~P~~~--~~~~Pv~v~iHGG~~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~--~~~~~~~n~gl 170 (537)
T 1ea5_A 95 LYLNIWVPSPR--PKSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALH--GSQEAPGNVGL 170 (537)
T ss_dssp CEEEEEECSSC--CSSEEEEEEECCSTTTCCCTTCGGGCTHHHHHHHTCEEEECCCCCHHHHHCCCT--TCSSSCSCHHH
T ss_pred CeEEEeccCCC--CCCCeEEEEECCCcccCCCCCCCccChHHHHhcCCEEEEEeccCccccccccCC--CCCCCcCcccc
Confidence 34457788742 3678999999998876544321 12234565 78999999999942 1221110 00112334458
Q ss_pred HHHHHHHHHHHHcC---CCCCCcEEEEEecchHHHHHHHHHh--CCCceeEEEecCCcc
Q 003363 653 NDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLC 706 (826)
Q Consensus 653 ~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~~ 706 (826)
.|+.++++|+.++. ..|+++|.|+|+|+||.++..++.. ...+|+++|+.+|..
T Consensus 171 ~D~~~al~wv~~ni~~fggdp~~vtl~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~ 229 (537)
T 1ea5_A 171 LDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSP 229 (537)
T ss_dssp HHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCT
T ss_pred HHHHHHHHHHHHHHHHhCCCccceEEEecccHHHHHHHHHhCccchhhhhhheeccCCc
Confidence 99999999999862 4799999999999999999888764 246899999999864
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.7e-08 Score=105.93 Aligned_cols=262 Identities=8% Similarity=-0.010 Sum_probs=143.2
Q ss_pred cceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCcccc
Q 003363 124 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGS 203 (826)
Q Consensus 124 ~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~ 203 (826)
.....+.++++... .....+.... ..+...+|+|+|+.|+.....+ .-.+|.++.......+... ....+.
T Consensus 36 ~~dg~v~vw~~~~~-~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg--~i~~~~~~~~~~~~~~~~~-~~~~~~ 106 (313)
T 3odt_A 36 SRDGTVRLWSKDDQ-WLGTVVYTGQ-----GFLNSVCYDSEKELLLFGGKDT--MINGVPLFATSGEDPLYTL-IGHQGN 106 (313)
T ss_dssp ETTSEEEEEEESSS-EEEEEEEECS-----SCEEEEEEETTTTEEEEEETTS--CEEEEETTCCTTSCC-CEE-CCCSSC
T ss_pred EcCCcEEEEECCCC-EEEEEeecCC-----ccEEEEEECCCCCEEEEecCCC--eEEEEEeeecCCCCcccch-hhcccC
Confidence 34556777776322 1122222222 4688999999999998876543 3233333322211111111 122222
Q ss_pred ccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeec-CCCccCCCccCceEEEEEccC
Q 003363 204 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE-DWGETYAGKRQPSLFVININS 282 (826)
Q Consensus 204 v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~g~~~~~~~~~~l~v~d~~~ 282 (826)
| ..+.| +++.|+..+.+.... .|+ ..........+........|.+ +....+++.....|.+||. .
T Consensus 107 i------~~~~~--~~~~l~~~~~d~~i~--~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~-~ 173 (313)
T 3odt_A 107 V------CSLSF--QDGVVISGSWDKTAK--VWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN-D 173 (313)
T ss_dssp E------EEEEE--ETTEEEEEETTSEEE--EEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET-T
T ss_pred E------EEEEe--cCCEEEEEeCCCCEE--EEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec-C
Confidence 2 56777 677887776655332 222 0111111112223333445555 4344455556788999993 2
Q ss_pred CceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCC
Q 003363 283 GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL 362 (826)
Q Consensus 283 g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 362 (826)
.....+. ......+..++|+|+++ ++..+ .+..|+++|+ .++
T Consensus 174 ~~~~~~~-~~~~~~i~~~~~~~~~~-----~~~~~---------------~dg~i~i~d~-----------------~~~ 215 (313)
T 3odt_A 174 KVIKTFS-GIHNDVVRHLAVVDDGH-----FISCS---------------NDGLIKLVDM-----------------HTG 215 (313)
T ss_dssp EEEEEEC-SSCSSCEEEEEEEETTE-----EEEEE---------------TTSEEEEEET-----------------TTC
T ss_pred ceEEEEe-ccCcccEEEEEEcCCCe-----EEEcc---------------CCCeEEEEEC-----------------Cch
Confidence 3333342 22455678899999987 55544 2347889998 434
Q ss_pred -cceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCccc
Q 003363 363 -PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGL 441 (826)
Q Consensus 363 -~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~ 441 (826)
....+..+...+....|+||| +|+..+.+ ..|++||+.++..... +...
T Consensus 216 ~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d-----------g~v~iwd~~~~~~~~~----------~~~~-------- 265 (313)
T 3odt_A 216 DVLRTYEGHESFVYCIKLLPNG-DIVSCGED-----------RTVRIWSKENGSLKQV----------ITLP-------- 265 (313)
T ss_dssp CEEEEEECCSSCEEEEEECTTS-CEEEEETT-----------SEEEEECTTTCCEEEE----------EECS--------
T ss_pred hhhhhhhcCCceEEEEEEecCC-CEEEEecC-----------CEEEEEECCCCceeEE----------Eecc--------
Confidence 345566667778899999999 45544433 4699999887653211 1110
Q ss_pred ccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcE
Q 003363 442 YSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL 480 (826)
Q Consensus 442 ~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~ 480 (826)
...+..+.|+|||+ ++ +...++ .|..+|+.+++.
T Consensus 266 -~~~i~~~~~~~~~~-~~-~~~~dg--~i~iw~~~~~~~ 299 (313)
T 3odt_A 266 -AISIWSVDCMSNGD-II-VGSSDN--LVRIFSQEKSRW 299 (313)
T ss_dssp -SSCEEEEEECTTSC-EE-EEETTS--CEEEEESCGGGC
T ss_pred -CceEEEEEEccCCC-EE-EEeCCC--cEEEEeCCCCce
Confidence 11234678999998 43 344444 455556666553
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.91 E-value=7.2e-08 Score=114.95 Aligned_cols=245 Identities=11% Similarity=0.072 Sum_probs=143.1
Q ss_pred EEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCC-ccceeecCCcceecccEEEEeCCC--CCeEEEEecCC
Q 003363 99 WTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENEN-SVTFQWAPFPVEMTGASAVVPSPS--GSKLLVVRNPE 175 (826)
Q Consensus 99 ~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~-~~~lt~~~~~~~~~~~~~~~~SPd--G~~la~~~~~~ 175 (826)
...-.++|||+.++... ..+.+.++++...... ...+.... ..+...+|||+ |+.|+.....+
T Consensus 12 V~~l~~s~dg~~latg~---------~dg~I~vwd~~~~~~~~~~~l~~h~-----~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 12 IHDAVLDYYGKRLATCS---------SDKTIKIFEVEGETHKLIDTLTGHE-----GPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp EEEECCCSSSCCEEEEE---------TTTEEEEEEEETTEEEEEEEECCCS-----SCEEEEEECCTTSCSEEEEEETTS
T ss_pred eEEEEECCCCCeEEEEE---------CCCcEEEEecCCCCCccceeccCCc-----CceEEEEecCCCCCCEEEEEeCCC
Confidence 33445689999876542 2345666666432221 12222222 46889999999 99998876643
Q ss_pred CCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCC--CCeEEEEeecCCCCCCCccCCCCCCCCCCccCC
Q 003363 176 NESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCN 251 (826)
Q Consensus 176 ~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPD--g~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (826)
.+.+| ..++...+... ....+.| ..+.|+|+ |+.|+..+.+
T Consensus 78 -----~I~vwd~~~~~~~~~~~~-~~h~~~V------~~v~~sp~~~~~~l~sgs~d----------------------- 122 (753)
T 3jro_A 78 -----KVLIWKEENGRWSQIAVH-AVHSASV------NSVQWAPHEYGPLLLVASSD----------------------- 122 (753)
T ss_dssp -----CEEEEEEETTEEEEEEEE-CCCSSCE------EEEEECCGGGCSEEEEEETT-----------------------
T ss_pred -----eEEEEECCCCcccccccc-cCCCCCe------EEEEECCCCCCCEEEEEeCC-----------------------
Confidence 34555 23332222222 1222233 79999999 8888876433
Q ss_pred CCCCcceeecCCCccCCCccCceEEEEEccCCc---eEeccCCCCCCccceEEEee-------------CCCCCccEEEE
Q 003363 252 SWKGQGDWEEDWGETYAGKRQPSLFVININSGE---VQAVKGIPKSLSVGQVVWAP-------------LNEGLHQYLVF 315 (826)
Q Consensus 252 ~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~---~~~l~~~~~~~~~~~~~wSP-------------Dg~~~~~~lvf 315 (826)
..|.+||+.++. ...+ ......+..+.|+| ||+. |+.
T Consensus 123 ---------------------g~I~vwdl~~~~~~~~~~~--~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~----l~s 175 (753)
T 3jro_A 123 ---------------------GKVSVVEFKENGTTSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRK----FVT 175 (753)
T ss_dssp ---------------------SEEEEEECCSSSCCCCEEE--ECCSSCEEEEEECCCC---------CGGGCC----EEE
T ss_pred ---------------------CcEEEEEeecCCCcceeEe--ecCCCceEEEEecCcccccccccccCCCCCE----EEE
Confidence 578999988763 2223 23344677899999 5777 776
Q ss_pred EeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCC-CcceecCCCCccccCceecCC---CCEEEEEec
Q 003363 316 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVNLTESISSAFFPRFSPD---GKFLVFLSA 391 (826)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~Lt~~~~~~~~p~~SpD---G~~l~f~s~ 391 (826)
.+ .+..|+++|+.... .. .....+..+...+....|+|| |+.|+..+.
T Consensus 176 gs---------------~dg~I~iwd~~~~~-------------~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~ 227 (753)
T 3jro_A 176 GG---------------ADNLVKIWKYNSDA-------------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 227 (753)
T ss_dssp EE---------------TTSCEEEEEEETTT-------------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES
T ss_pred EE---------------CCCeEEEEeccCCc-------------ccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec
Confidence 65 23467788772100 00 122455666777899999999 887776664
Q ss_pred cCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003363 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (826)
Q Consensus 392 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (826)
+ ..|.+||+.++......... . . . .+...+..++|+|||+.|+ +...++...+|
T Consensus 228 D-----------g~I~iwd~~~~~~~~~~~~~----~---~---~----~~~~~v~~l~~spdg~~l~-s~s~Dg~I~vw 281 (753)
T 3jro_A 228 D-----------RTCIIWTQDNEQGPWKKTLL----K---E---E----KFPDVLWRASWSLSGNVLA-LSGGDNKVTLW 281 (753)
T ss_dssp S-----------SCEEEEEESSSSSCCBCCBS----S---S---S----CCSSCCCCEEECTTTCCEE-EECSSSCEECC
T ss_pred C-----------CEEEEecCCCCCCcceeEEe----c---c---C----CCCCceEEEEEcCCCCEEE-EEcCCCEEEEE
Confidence 4 35888988775432111000 0 0 0 0122456789999998664 44445554444
Q ss_pred EE
Q 003363 472 SV 473 (826)
Q Consensus 472 ~v 473 (826)
.+
T Consensus 282 d~ 283 (753)
T 3jro_A 282 KE 283 (753)
T ss_dssp BC
T ss_pred ec
Confidence 43
|
| >3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic residues, glycoprotein, hydrolase, lipid degradation, zymogen, disulf; HET: NAG BTB; 1.49A {Candida antarctica} PDB: 3icw_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=8.4e-09 Score=106.73 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=83.5
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch-HHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHH
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 654 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~-~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D 654 (826)
+...++.|.. .+.+..+.||++||..... ...|. .....|+++||.|+.+|++|. |... .....++
T Consensus 50 L~~~i~~p~~-~~~~~~~pVVLvHG~~~~~-~~~w~~~l~~~L~~~Gy~V~a~DlpG~---G~~~--------~~~~~~~ 116 (316)
T 3icv_A 50 LDAGLTCQGA-SPSSVSKPILLVPGTGTTG-PQSFDSNWIPLSAQLGYTPCWISPPPF---MLND--------TQVNTEY 116 (316)
T ss_dssp HHHTEEETTB-BTTBCSSEEEEECCTTCCH-HHHHTTTHHHHHHHTTCEEEEECCTTT---TCSC--------HHHHHHH
T ss_pred HhhhEeCCCC-CCCCCCCeEEEECCCCCCc-HHHHHHHHHHHHHHCCCeEEEecCCCC---CCCc--------HHHHHHH
Confidence 3344555633 2334556799999965431 13565 678899999999999999984 3211 1123567
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhC---CCceeEEEecCCccc
Q 003363 655 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCN 707 (826)
Q Consensus 655 ~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~---p~~~~a~v~~~p~~~ 707 (826)
+.+.++.+.+.. ..+++.|+||||||.++.+++..+ +++++.+|+++|...
T Consensus 117 la~~I~~l~~~~--g~~~v~LVGHSmGGlvA~~al~~~p~~~~~V~~lV~lapp~~ 170 (316)
T 3icv_A 117 MVNAITTLYAGS--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK 170 (316)
T ss_dssp HHHHHHHHHHHT--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTT
T ss_pred HHHHHHHHHHHh--CCCceEEEEECHHHHHHHHHHHhccccchhhceEEEECCCCC
Confidence 888888887763 347899999999999998777765 589999999998654
|
| >2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha/beta- hydrolases, catalytic triade, hydrolase; 1.8A {Bacillus subtilis} PDB: 2cbg_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=5.6e-09 Score=106.00 Aligned_cols=190 Identities=7% Similarity=-0.022 Sum_probs=111.0
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
..|.||++||.+.. ...|...+..|. .+|.|+.+|++|. + ...+++.+.++.+. ..
T Consensus 21 ~~~~l~~~hg~~~~--~~~~~~~~~~l~-~~~~v~~~d~~g~---~-------------~~~~~~~~~i~~~~-----~~ 76 (244)
T 2cb9_A 21 GGKNLFCFPPISGF--GIYFKDLALQLN-HKAAVYGFHFIEE---D-------------SRIEQYVSRITEIQ-----PE 76 (244)
T ss_dssp CSSEEEEECCTTCC--GGGGHHHHHHTT-TTSEEEEECCCCS---T-------------THHHHHHHHHHHHC-----SS
T ss_pred CCCCEEEECCCCCC--HHHHHHHHHHhC-CCceEEEEcCCCH---H-------------HHHHHHHHHHHHhC-----CC
Confidence 35679999997654 456777777775 5899999999982 1 12455555554431 13
Q ss_pred CcEEEEEecchHHHHHHHHHhC---CCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCC-h------
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS-V------ 740 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~---p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------ 740 (826)
.++.|+|||+||.++..++.+. ++.+.++++.++...... ......... ...+. .+. .
T Consensus 77 ~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~lvl~~~~~~~~~------~~~~~~~~~-----~~~~~-~~~~~~~~~~~ 144 (244)
T 2cb9_A 77 GPYVLLGYSAGGNLAFEVVQAMEQKGLEVSDFIIVDAYKKDQS------ITADTENDD-----SAAYL-PEAVRETVMQK 144 (244)
T ss_dssp SCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCCCCSC------CCCC------------CCS-CHHHHHHHTHH
T ss_pred CCEEEEEECHhHHHHHHHHHHHHHcCCCccEEEEEcCCCCccc------ccccccHHH-----HHHHh-HHHHHHHHHHH
Confidence 5799999999999999998765 577888888876532100 000000000 00000 000 0
Q ss_pred -hhHHHHhhcCcccccCCCCCcEEEEEeC--CCCCCCcHHHHHHHHHHHhC-CCCEEEEEeCCCCCC-CCCCCCHHHHHH
Q 003363 741 -EDLTRFHSKSPISHISKVKTPTIFLLGA--QDLRVPVSNGLQYARALREK-GVETKVIVFPNDVHG-IERPQSDFESFL 815 (826)
Q Consensus 741 -~~~~~~~~~sp~~~~~~i~~PvLii~G~--~D~~vp~~~~~~~~~~l~~~-g~~~~~~~~p~~~H~-~~~~~~~~~~~~ 815 (826)
.....+... .....++++|+++++|+ +|. +++... +.+.+. ..+++++++|+ +|. +...+....+..
T Consensus 145 ~~~~~~~~~~--~~~~~~i~~Pvl~i~g~~~~D~-~~~~~~----~~w~~~~~~~~~~~~i~g-gH~~~~~~~~~~~~~~ 216 (244)
T 2cb9_A 145 KRCYQEYWAQ--LINEGRIKSNIHFIEAGIQTET-SGAMVL----QKWQDAAEEGYAEYTGYG-AHKDMLEGEFAEKNAN 216 (244)
T ss_dssp HHHHHHHHHH--CCCCSCBSSEEEEEECSBCSCC-CHHHHT----TSSGGGBSSCEEEEECSS-BGGGTTSHHHHHHHHH
T ss_pred HHHHHHHHHh--hccCCCcCCCEEEEEccCcccc-ccccch----hHHHHhcCCCCEEEEecC-ChHHHcChHHHHHHHH
Confidence 001111110 12346788999999999 887 333222 222222 23589999997 883 333334446777
Q ss_pred HHHHHHHHH
Q 003363 816 NIGLWFKKY 824 (826)
Q Consensus 816 ~i~~w~~~~ 824 (826)
.+.+||.+.
T Consensus 217 ~i~~~L~~~ 225 (244)
T 2cb9_A 217 IILNILDKI 225 (244)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhcC
Confidence 888888753
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-07 Score=105.16 Aligned_cols=267 Identities=9% Similarity=0.014 Sum_probs=139.8
Q ss_pred CC-CcceEEEEEeechhhcccceeEEEEEEeec---CCCCcccee-ecCCcceecccEEEEeCCCCCeEEEEecCCCCCC
Q 003363 105 NG-NGTQAMFSISQPNLLANKRKKFMLSTVISK---ENENSVTFQ-WAPFPVEMTGASAVVPSPSGSKLLVVRNPENESP 179 (826)
Q Consensus 105 s~-dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~---~~~~~~~lt-~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~ 179 (826)
+| ||+.++... .+..+.++++.. .......++ ... ..+...+|+|+|+.|+.....+ .-
T Consensus 72 s~~~~~~l~s~s---------~dg~v~vwd~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~l~s~s~dg--~i 135 (437)
T 3gre_A 72 SPGETPYLITGS---------DQGVIKIWNLKEIIVGEVYSSSLTYDCS-----STVTQITMIPNFDAFAVSSKDG--QI 135 (437)
T ss_dssp ECSSSCEEEEEE---------TTSEEEEEEHHHHHTTCCCSCSEEEECS-----SCEEEEEECTTSSEEEEEETTS--EE
T ss_pred CCCCCCEEEEec---------CCceEEEeECcccccCcccceeeeccCC-----CCEEEEEEeCCCCEEEEEeCCC--EE
Confidence 67 887665432 345677777644 210111222 112 4689999999999998876543 22
Q ss_pred eEEEEe--cCCceeEEEecCCCcccccc----CCCccccee--ecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCC
Q 003363 180 IQFELW--SQSQLEKEFHVPQTVHGSVY----ADGWFEGIS--WNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCN 251 (826)
Q Consensus 180 ~~~~i~--~~~~~~~~~~~~~~~~g~v~----~~~~~~~~~--wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (826)
.+|.+. ..++..+..... .++.-.+ .++....+. |+||++.|+..+.
T Consensus 136 ~vwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------ 190 (437)
T 3gre_A 136 IVLKVNHYQQESEVKFLNCE-CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN------------------------ 190 (437)
T ss_dssp EEEEEEEEEETTEEEEEEEE-EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET------------------------
T ss_pred EEEEeccccCCceeeccccc-eeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC------------------------
Confidence 333332 133332222111 1100000 011112333 6677877776543
Q ss_pred CCCCcceeecCCCccCCCccCceEEEEEccCCceEec-cCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeee
Q 003363 252 SWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYC 330 (826)
Q Consensus 252 ~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l-~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~ 330 (826)
...|.+||+.+++.... .+......+..++|+|||+. |+..+
T Consensus 191 --------------------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~----l~s~~------------- 233 (437)
T 3gre_A 191 --------------------LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCV----LILGT------------- 233 (437)
T ss_dssp --------------------TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCE----EEEEE-------------
T ss_pred --------------------CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCE----EEEEc-------------
Confidence 35799999988876543 21113457789999999997 76655
Q ss_pred ccCCCceEEEEcccccchhhhhhhhcCCCCCCcc-eecC-CCCcccc----CceecCCCCEEEEEeccCCCCCCCCcccc
Q 003363 331 YNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLT-ESISSAF----FPRFSPDGKFLVFLSAKSSVDSGAHSATD 404 (826)
Q Consensus 331 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt-~~~~~~~----~p~~SpDG~~l~f~s~~~~~~~g~~~~~~ 404 (826)
.+..|.++|+ ..++. ..+. .+...+. .|.|+|||+.|+..+.+ .
T Consensus 234 --~dg~i~iwd~-----------------~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~d-----------g 283 (437)
T 3gre_A 234 --TRGIIDIWDI-----------------RFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK-----------T 283 (437)
T ss_dssp --TTSCEEEEET-----------------TTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTT-----------E
T ss_pred --CCCeEEEEEc-----------------CCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCC-----------C
Confidence 3347888998 44443 3332 3333333 44778888877755533 4
Q ss_pred eEEEEeCCCCCCCCcccceeeeeeeeec-cCC-----CCCcc-cccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCC
Q 003363 405 SLHRIDWPTNGNFSSLEKIVDVIPVVQC-AEG-----DCFPG-LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS 477 (826)
Q Consensus 405 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~f~g-~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~t 477 (826)
.|.+||+.++............+..... +.. ..+.| .+...+..++|+ +++ ++++...++ .|..+|+.+
T Consensus 284 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~~d~--~i~~wd~~~ 359 (437)
T 3gre_A 284 FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-ILLTDEATS--SIVMFSLNE 359 (437)
T ss_dssp EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEGGGT--EEEEEETTC
T ss_pred cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce-EEEecCCCC--eEEEEECCC
Confidence 6999999876532211111000000000 000 01111 122345677888 665 445544344 566678888
Q ss_pred CcEEEe
Q 003363 478 GELLRI 483 (826)
Q Consensus 478 g~~~~l 483 (826)
++....
T Consensus 360 ~~~~~~ 365 (437)
T 3gre_A 360 LSSSKA 365 (437)
T ss_dssp GGGCEE
T ss_pred cccceE
Confidence 764433
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=98.89 E-value=7.1e-08 Score=102.42 Aligned_cols=194 Identities=12% Similarity=0.086 Sum_probs=111.7
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCc---cceeecCCcceecccEEEEeCC--CCCeEEEEecCCCCC
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENS---VTFQWAPFPVEMTGASAVVPSP--SGSKLLVVRNPENES 178 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~---~~lt~~~~~~~~~~~~~~~~SP--dG~~la~~~~~~~~~ 178 (826)
++|||+.++... ....+.++++....... ..+.... ..+...+|+| ||+.|+.....+
T Consensus 19 ~~~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~d~~~l~s~~~dg--- 81 (351)
T 3f3f_A 19 YDFYGRHVATCS---------SDQHIKVFKLDKDTSNWELSDSWRAHD-----SSIVAIDWASPEYGRIIASASYDK--- 81 (351)
T ss_dssp ECSSSSEEEEEE---------TTSEEEEEEECSSSCCEEEEEEEECCS-----SCEEEEEECCGGGCSEEEEEETTS---
T ss_pred EcCCCCEEEEee---------CCCeEEEEECCCCCCcceecceeccCC-----CcEEEEEEcCCCCCCEEEEEcCCC---
Confidence 478998776542 23466677765433221 1222222 4588999999 699998876543
Q ss_pred CeEEEEec--CCce-------eEEEecCCCccccccCCCcccceeecCC--CCeEEEEeecCCCCCCCccCCCCCCCCCC
Q 003363 179 PIQFELWS--QSQL-------EKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPSPSKPTFSLGSTKGGSSD 247 (826)
Q Consensus 179 ~~~~~i~~--~~~~-------~~~~~~~~~~~g~v~~~~~~~~~~wSPD--g~~ia~~~~~~~~~~~~~~~~~~~~~~~~ 247 (826)
.+.+|+ .++. ..+... ....+.| ..+.|+|+ ++.|+..+.+
T Consensus 82 --~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~v------~~~~~~~~~~~~~l~~~~~d------------------- 133 (351)
T 3f3f_A 82 --TVKLWEEDPDQEECSGRRWNKLCTL-NDSKGSL------YSVKFAPAHLGLKLACLGND------------------- 133 (351)
T ss_dssp --CEEEEEECTTSCTTSSCSEEEEEEE-CCCSSCE------EEEEECCGGGCSEEEEEETT-------------------
T ss_pred --eEEEEecCCCcccccccCcceeeee-cccCCce------eEEEEcCCCCCcEEEEecCC-------------------
Confidence 344552 2210 222222 1222333 78999999 9988886543
Q ss_pred ccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEec----------c--CCCCCCccceEEEeeC---CCCCccE
Q 003363 248 KDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV----------K--GIPKSLSVGQVVWAPL---NEGLHQY 312 (826)
Q Consensus 248 ~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l----------~--~~~~~~~~~~~~wSPD---g~~~~~~ 312 (826)
..|.+||+.+++.... . .......+..+.|+|+ ++.
T Consensus 134 -------------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---- 184 (351)
T 3f3f_A 134 -------------------------GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEK---- 184 (351)
T ss_dssp -------------------------CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCE----
T ss_pred -------------------------CcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcE----
Confidence 4688888776653211 0 0122335678999998 665
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc---ceecCCCCccccCceecCCC----CE
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESISSAFFPRFSPDG----KF 385 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~Lt~~~~~~~~p~~SpDG----~~ 385 (826)
|+..+. ...+...+. ..+. ...+..+...+....|+|+| +.
T Consensus 185 l~~~~~---------------~~~~~~~~~-----------------~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~ 232 (351)
T 3f3f_A 185 LAVSAL---------------EQAIIYQRG-----------------KDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQL 232 (351)
T ss_dssp EEEEET---------------TEEEEEEEC-----------------TTSCEEEEEECCCCCSCEEEEEECCCSSCSSEE
T ss_pred EEEecC---------------CCcEEEEcc-----------------CCCceeeeeecCCCCcceeEEEECCCCCCcceE
Confidence 555541 113333333 2333 34455566778899999999 56
Q ss_pred EEEEeccCCCCCCCCcccceEEEEeCCCC
Q 003363 386 LVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (826)
Q Consensus 386 l~f~s~~~~~~~g~~~~~~~l~~~d~~~~ 414 (826)
|+..+.+ ..|.+||+.++
T Consensus 233 l~s~~~d-----------g~i~iwd~~~~ 250 (351)
T 3f3f_A 233 IATGCKD-----------GRIRIFKITEK 250 (351)
T ss_dssp EEEEETT-----------SCEEEEEEEEC
T ss_pred EEEEcCC-----------CeEEEEeCCCC
Confidence 6555543 34777877654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=5.5e-07 Score=94.52 Aligned_cols=243 Identities=14% Similarity=0.083 Sum_probs=149.7
Q ss_pred EEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 157 SAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 157 ~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
...+|||++ .||...+. .+.+| ..++..+..... +..+.| ..++|+|||+.||..+.+
T Consensus 29 ~~l~WS~~~-~lAvg~D~------tV~iWd~~tg~~~~~~~~~-~~~~~V------~~v~~~~~~~~l~sgs~D------ 88 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVALDN------SVYLWSASSGDILQLLQME-QPGEYI------SSVAWIKEGNYLAVGTSS------ 88 (318)
T ss_dssp BCEEECTTS-EEEEEETT------EEEEEETTTCCEEEEEECC-STTCCE------EEEEECTTSSEEEEEETT------
T ss_pred eEEEECCCC-EEEEEeCC------EEEEEECCCCCEEEEEEec-CCCCeE------EEEEECCCCCEEEEEECC------
Confidence 457999987 67764432 46788 355655655432 222223 789999999999876543
Q ss_pred CccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003363 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (826)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lv 314 (826)
..|.+||+.+++.... .... ......++++++. ++
T Consensus 89 --------------------------------------g~v~iw~~~~~~~~~~--~~~h-~~~~~~~~~~~~~----l~ 123 (318)
T 4ggc_A 89 --------------------------------------AEVQLWDVQQQKRLRN--MTSH-SARVGSLSWNSYI----LS 123 (318)
T ss_dssp --------------------------------------SEEEEEETTTTEEEEE--EECC-SSCEEEEEEETTE----EE
T ss_pred --------------------------------------CcEEEeecCCceeEEE--ecCc-cceEEEeecCCCE----EE
Confidence 5789999999876543 1111 2234567888875 55
Q ss_pred EEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCC
Q 003363 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 394 (826)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~ 394 (826)
..+ ....+..++... .......+..+........|+++|+.|+..+.+
T Consensus 124 s~~---------------~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-- 171 (318)
T 4ggc_A 124 SGS---------------RSGHIHHHDVRV---------------AEHHVATLSGHSQEVCGLRWAPDGRHLASGGND-- 171 (318)
T ss_dssp EEE---------------TTSEEEEEETTS---------------SSCEEEEEECCSSCEEEEEECTTSSEEEEEETT--
T ss_pred EEe---------------cCCceEeeecCC---------------CceeEEEEcCccCceEEEEEcCCCCEEEEEecC--
Confidence 444 222455555410 222334555666677888999999988766644
Q ss_pred CCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003363 395 VDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (826)
Q Consensus 395 ~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vd 474 (826)
..|.+||+.+++.......... . ....+....|++++..++..........+..+|
T Consensus 172 ---------~~i~iwd~~~~~~~~~~~~~~~-----------~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd 227 (318)
T 4ggc_A 172 ---------NLVNVWPSAPGEGGWVPLQTFT-----------Q----HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 227 (318)
T ss_dssp ---------SCEEEEESSCBTTBSCCSEEEC-----------C----CCSCEEEEEECTTSTTEEEEEECTTTCEEEEEE
T ss_pred ---------cceeEEECCCCcccccceeeec-----------c----cCCceEEEEecCCCCcEEEEEecCCCCEEEEEe
Confidence 3588899887654221111100 0 011233556788877777666655556677778
Q ss_pred CCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003363 475 VSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (826)
Q Consensus 475 l~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 522 (826)
..++...........+....++++++.+++.....+. .|.+.++.+
T Consensus 228 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~--~i~iwd~~~ 273 (318)
T 4ggc_A 228 VCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQN--QLVIWKYPT 273 (318)
T ss_dssp TTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTC--CEEEEETTT
T ss_pred cccccccccccceeeeeeeeecccccceEEEEEcCCC--EEEEEECCC
Confidence 8888777666665566677889999988776644332 366666543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.5e-07 Score=97.24 Aligned_cols=201 Identities=12% Similarity=0.065 Sum_probs=115.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCC-ccccccCCCcccceeecCCCCeEEEEeecCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQT-VHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~-~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~ 230 (826)
..+....|||+ .||.....+ .+.+|+ .+....+..+... ..+.| ..++|||||+.||..+.+
T Consensus 15 ~~v~~~~~s~~--~las~~~D~-----~i~lw~~~~~~~~~~~~~~~~~h~~~v------~~v~~sp~~~~las~s~D-- 79 (330)
T 2hes_X 15 EKIWSFDFSQG--ILATGSTDR-----KIKLVSVKYDDFTLIDVLDETAHKKAI------RSVAWRPHTSLLAAGSFD-- 79 (330)
T ss_dssp SCEEEEEEETT--EEEEEESSS-----CEEEEECSSSCCEEEEEECTTCCCSCE------EEEEECTTSSEEEEEETT--
T ss_pred CceeeeccCCC--EEEEEcCCC-----EEEEEEecCCCeEEEEEEecCCccCCE------EEEEECCCCCEEEEEeCC--
Confidence 34788899988 666654432 456662 2222222222122 33334 789999999998887544
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCC-------c-eEeccCCCCCCccceEEE
Q 003363 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG-------E-VQAVKGIPKSLSVGQVVW 302 (826)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g-------~-~~~l~~~~~~~~~~~~~w 302 (826)
..|.+||+..+ + ...+ ......+..++|
T Consensus 80 ------------------------------------------~~v~iw~~~~~~~~~~~~~~~~~~--~~h~~~V~~v~~ 115 (330)
T 2hes_X 80 ------------------------------------------STVSIWAKEESADRTFEMDLLAII--EGHENEVKGVAW 115 (330)
T ss_dssp ------------------------------------------SCEEEEEC-------CCCEEEEEE--C----CEEEEEE
T ss_pred ------------------------------------------CcEEEEEcccCcCccccceeEEEE--cCCCCcEEEEEE
Confidence 35677776432 1 1223 223346778999
Q ss_pred eeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCC-CcceecCCCCccccCceecC
Q 003363 303 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVNLTESISSAFFPRFSP 381 (826)
Q Consensus 303 SPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~Lt~~~~~~~~p~~Sp 381 (826)
+|||+. |+..+ .+..|.++|+... ... .....+..+...+....|+|
T Consensus 116 sp~g~~----las~s---------------~D~~v~iwd~~~~-------------~~~~~~~~~~~~h~~~v~~v~~~p 163 (330)
T 2hes_X 116 SNDGYY----LATCS---------------RDKSVWIWETDES-------------GEEYECISVLQEHSQDVKHVIWHP 163 (330)
T ss_dssp CTTSCE----EEEEE---------------TTSCEEEEECCTT-------------CCCCEEEEEECCCSSCEEEEEECS
T ss_pred CCCCCE----EEEEe---------------CCCEEEEEeccCC-------------CCCeEEEEEeccCCCceEEEEECC
Confidence 999997 77666 2346788887210 001 12345666777788999999
Q ss_pred CCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccC--CCEEE
Q 003363 382 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD--GCTML 459 (826)
Q Consensus 382 DG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~D--g~~l~ 459 (826)
||+.|+..+.+ ..|.+||..++... .+..+.. +...+..+.|+|+ +. ++
T Consensus 164 ~~~~l~s~s~D-----------~~i~iW~~~~~~~~--------~~~~~~~---------h~~~v~~~~~~~~~~~~-~l 214 (330)
T 2hes_X 164 SEALLASSSYD-----------DTVRIWKDYDDDWE--------CVAVLNG---------HEGTVWSSDFDKTEGVF-RL 214 (330)
T ss_dssp SSSEEEEEETT-----------SCEEEEEEETTEEE--------EEEEECC---------CSSCEEEEEECCSSSSC-EE
T ss_pred CCCEEEEEcCC-----------CeEEEEECCCCCee--------EEEEccC---------CCCcEEEEEecCCCCee-EE
Confidence 99988876654 34777776543211 1111100 1113346678998 44 44
Q ss_pred EEEEeCCeEEEEEEE
Q 003363 460 LSSIWGSSQVIISVN 474 (826)
Q Consensus 460 ~~~~~~~~~~l~~vd 474 (826)
++...++...||.++
T Consensus 215 ~s~s~D~~v~iw~~~ 229 (330)
T 2hes_X 215 CSGSDDSTVRVWKYM 229 (330)
T ss_dssp EEEETTSCEEEEEEE
T ss_pred EEEeCCCeEEEEEec
Confidence 566667777787665
|
| >1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse, membrane, nerve, muscle neurotransmitter degradation, glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.7e-09 Score=121.91 Aligned_cols=118 Identities=16% Similarity=0.137 Sum_probs=81.7
Q ss_pred CCCCcEEEEEcCCCCCCCCccc-hHHHHHHH-HCCcEEEEECCCC-CCCCchhhh---h-cCCCCCCcchHHHHHHHHHH
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSY-SKSLAFLS-SVGYSLLIVNYRG-SLGFGEEAL---Q-SLPGKVGSQDVNDVLTAIDH 661 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~-~~~~~~la-~~G~~Vl~~d~rG-~~g~G~~~~---~-~~~~~~~~~~~~D~~~~i~~ 661 (826)
.++.|+||++|||++....... ......|+ ..|++|+.+|||. .-||..... . ......+...+.|+.++++|
T Consensus 138 ~~~~PV~v~iHGGg~~~g~~~~~~~~~~~l~~~~~~vvv~~nYRlg~~Gfl~~~~~~~~~~~~~~~~n~gl~D~~~al~w 217 (585)
T 1dx4_A 138 TNGLPILIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVGLWDQALAIRW 217 (585)
T ss_dssp CSSEEEEEEECCSTTTCCCTTCGGGCCHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcccCCCCCCCCCCchhhhccCCEEEEEecccccchhhcccccccccccCCCCCCcccHHHHHHHHHH
Confidence 4678999999999876544321 11234555 4799999999993 222221100 0 01112234458999999999
Q ss_pred HHHcC---CCCCCcEEEEEecchHHHHHHHHHhC--CCceeEEEecCCcc
Q 003363 662 VIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 706 (826)
Q Consensus 662 l~~~~---~~d~~rv~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~~ 706 (826)
+.++. ..|+++|.|+|+|+||.++..++... ..+|+++|+.+|..
T Consensus 218 v~~ni~~fggDp~~vti~G~SaGg~~v~~~~~~~~~~~lf~~ai~~Sg~~ 267 (585)
T 1dx4_A 218 LKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTM 267 (585)
T ss_dssp HHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCT
T ss_pred HHHHHHHhCCCcceeEEeecchHHHHHHHHHhCCcccchhHhhhhhcccc
Confidence 99862 36999999999999999998877642 36899999998853
|
| >1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18 | Back alignment and structure |
|---|
Probab=98.87 E-value=5.7e-09 Score=108.47 Aligned_cols=102 Identities=17% Similarity=0.231 Sum_probs=78.3
Q ss_pred CCCcEEEEEcCCCCCCC---CccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcC
Q 003363 590 SCDPLIVVLHGGPHSVS---LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 666 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~---~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 666 (826)
+..|.||++||...... ...|....+.|.++||.|+++|++| +|.+. ...+++.+.++.+++.
T Consensus 5 ~~~~~vvlvHG~~~~~~~~~~~~~~~~~~~L~~~G~~v~~~d~~g---~g~s~----------~~~~~~~~~i~~~~~~- 70 (285)
T 1ex9_A 5 QTKYPIVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQ---LDTSE----------VRGEQLLQQVEEIVAL- 70 (285)
T ss_dssp CCSSCEEEECCTTCCSEETTEESSTTHHHHHHHTTCCEEEECCCS---SSCHH----------HHHHHHHHHHHHHHHH-
T ss_pred CCCCeEEEeCCCCCCccccccccHHHHHHHHHhCCCEEEEEeCCC---CCCch----------hhHHHHHHHHHHHHHH-
Confidence 44678999999765431 2367778889999999999999998 43332 2345666666666554
Q ss_pred CCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCcc
Q 003363 667 LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (826)
Q Consensus 667 ~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 706 (826)
++.++|.|+|||+||.++..++.++|++++++|++++..
T Consensus 71 -~~~~~v~lvGhS~GG~~a~~~a~~~p~~v~~lv~i~~p~ 109 (285)
T 1ex9_A 71 -SGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAPH 109 (285)
T ss_dssp -HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred -hCCCCEEEEEECHhHHHHHHHHHhChhheeEEEEECCCC
Confidence 245789999999999999999999999999999998853
|
| >2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A {Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A 1jmy_A | Back alignment and structure |
|---|
Probab=98.85 E-value=8.6e-10 Score=125.39 Aligned_cols=127 Identities=20% Similarity=0.204 Sum_probs=85.4
Q ss_pred EEEEEEecCCCC-CCCCCcEEEEEcCCCCCCCCcc-------chHHHHHHH-HCCcEEEEECCCCC-CCCchhhhhcCCC
Q 003363 576 FEAIFVSSSHKK-DCSCDPLIVVLHGGPHSVSLSS-------YSKSLAFLS-SVGYSLLIVNYRGS-LGFGEEALQSLPG 645 (826)
Q Consensus 576 l~~~~~~P~~~~-~~~~~P~vv~~HGg~~~~~~~~-------~~~~~~~la-~~G~~Vl~~d~rG~-~g~G~~~~~~~~~ 645 (826)
+...+|.|.... ..++.|+||++|||++...... +......|+ ..|++|+.+|||.. .|+........+
T Consensus 81 l~lnv~~P~~~~~~~~~~PV~v~iHGGg~~~Gs~~~~~~~~~~~~~~~~la~~~~vvvV~~nYRLg~~Gfl~~~~~~~p- 159 (579)
T 2bce_A 81 LYLNIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLGFLSTGDSNLP- 159 (579)
T ss_dssp CEEEEEEEECSSSCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHHHHHCCCSSTTCC-
T ss_pred CEEEEEECCCCCCCCCCCeEEEEECCCcccCCCCCccccccccccChHHHhcCCCEEEEEeCCccccccCCcCCCCCCC-
Confidence 444577786532 3467899999999886433221 111123454 45799999999942 222211111122
Q ss_pred CCCcchHHHHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHh--CCCceeEEEecCCc
Q 003363 646 KVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPL 705 (826)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~ 705 (826)
+...+.|+.++++|+.++ ...|+++|.|+|+|.||.++..++.. ...+|+++|+.++.
T Consensus 160 --gn~gl~D~~~Al~wv~~ni~~fGgDp~~Vti~G~SAGg~~~~~~~~~~~~~~lf~~ai~~Sg~ 222 (579)
T 2bce_A 160 --GNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGV 222 (579)
T ss_dssp --CCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCC
T ss_pred --CccchHHHHHHHHHHHHHHHHhCCCcccEEEecccccchheeccccCcchhhHHHHHHHhcCC
Confidence 223488999999999885 24799999999999999999887764 34689999998874
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.85 E-value=9.6e-08 Score=104.40 Aligned_cols=60 Identities=3% Similarity=0.097 Sum_probs=38.7
Q ss_pred cccEEEEeCC--------CCCeEEEEecCCCCCCeEEEEec---CCceeEEEecCCCccccccCCCcccceeecCCCCe-
Q 003363 154 TGASAVVPSP--------SGSKLLVVRNPENESPIQFELWS---QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL- 221 (826)
Q Consensus 154 ~~~~~~~~SP--------dG~~la~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~- 221 (826)
..+...+||| ||+.||..+.+. .+.+|+ ++........... + ..++|+|++..
T Consensus 137 ~~v~~v~~~p~~~~~~~~d~~~las~s~D~-----tv~~Wd~~~~~~~~~~~~~~~~----v------~~v~~~p~~~~~ 201 (393)
T 4gq1_A 137 NFVNDIDIADVYSADNRLAEQVIASVGDDC-----TLIIWRLTDEGPILAGYPLSSP----G------ISVQFRPSNPNQ 201 (393)
T ss_dssp SCEEEEEEEEEECTTCSEEEEEEEEEETTS-----EEEEEEEETTEEEEEEEECSSC----E------EEEEEETTEEEE
T ss_pred CceEEEEEccccccccCCCCCEEEEEECCC-----eEEEEECCCCceeeeecCCCCC----c------EEEEECCCCCce
Confidence 4688999998 999999887654 567773 2233333332222 2 78999999875
Q ss_pred EEEEeec
Q 003363 222 IAYVAEE 228 (826)
Q Consensus 222 ia~~~~~ 228 (826)
|+..+.+
T Consensus 202 l~~~~~d 208 (393)
T 4gq1_A 202 LIVGERN 208 (393)
T ss_dssp EEEEETT
T ss_pred EEecCCC
Confidence 5544333
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=98.84 E-value=8e-09 Score=109.94 Aligned_cols=211 Identities=11% Similarity=0.068 Sum_probs=115.3
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHH-HHHHHHcCCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLAN 669 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~d 669 (826)
..|.|+++||.+.. ...|...+..| ..+|.|+.+|++|. |..... . ..++++.+. ++.+.+. ..
T Consensus 100 ~~~~l~~lhg~~~~--~~~~~~l~~~L-~~~~~v~~~d~~g~---~~~~~~--~-----~~~~~~a~~~~~~i~~~--~~ 164 (329)
T 3tej_A 100 NGPTLFCFHPASGF--AWQFSVLSRYL-DPQWSIIGIQSPRP---NGPMQT--A-----ANLDEVCEAHLATLLEQ--QP 164 (329)
T ss_dssp SSCEEEEECCTTSC--CGGGGGGGGTS-CTTCEEEEECCCTT---TSHHHH--C-----SSHHHHHHHHHHHHHHH--CS
T ss_pred CCCcEEEEeCCccc--chHHHHHHHhc-CCCCeEEEeeCCCC---CCCCCC--C-----CCHHHHHHHHHHHHHHh--CC
Confidence 45789999997655 44666666666 56899999999984 333211 1 134444433 3333333 12
Q ss_pred CCcEEEEEecchHHHHHHHHHh---CCCceeEEEecCCccchhhhccC-----CCCCCchhhhhccCcC-CccCCCCCCh
Q 003363 670 PSKVTVVGGSHGGFLTTHLIGQ---APDKFVAAAARNPLCNLALMVGT-----TDIPDWCYVESYGSKG-KDSFTESPSV 740 (826)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~a~~---~p~~~~a~v~~~p~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~ 740 (826)
..++.|+|||+||.++..++.+ +|+.+..+++..+.......... .+.............. ........ .
T Consensus 165 ~~~~~l~G~S~Gg~ia~~~a~~L~~~~~~v~~lvl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 243 (329)
T 3tej_A 165 HGPYYLLGYSLGGTLAQGIAARLRARGEQVAFLGLLDTWPPETQNWQEKEANGLDPEVLAEINREREAFLAAQQGSTS-T 243 (329)
T ss_dssp SSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCCTHHHHTC-----CCCCTHHHHHHHHHHHHHHTTCCCSC-C
T ss_pred CCCEEEEEEccCHHHHHHHHHHHHhcCCcccEEEEeCCCCCCccccccccccccChhhHHHHHHHHHHHHHhcccccc-H
Confidence 3689999999999999999988 99999999988876543211100 0000000000000000 00000001 1
Q ss_pred hhHHHH----hhc-C--cccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCC-CCCCCCHHH
Q 003363 741 EDLTRF----HSK-S--PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG-IERPQSDFE 812 (826)
Q Consensus 741 ~~~~~~----~~~-s--p~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~-~~~~~~~~~ 812 (826)
+....+ ... . .......+.+|++++.|+.|..++......+.+.. ..++++.+++ +|. +..+.....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~l~~~~~d~~~~~~~~~~w~~~~----~~~~~~~v~g-~H~~~~~~~~~~~ 318 (329)
T 3tej_A 244 ELFTTIEGNYADAVRLLTTAHSVPFDGKATLFVAERTLQEGMSPERAWSPWI----AELDIYRQDC-AHVDIISPGTFEK 318 (329)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEEEGGGCCTTCCHHHHHTTTE----EEEEEEEESS-CGGGGGSTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcCCCeEEEEeccCCCCCCCchhhHHHhc----CCcEEEEecC-ChHHhCCChHHHH
Confidence 111111 100 0 00113456789999999999887765543332222 3588889984 665 444444445
Q ss_pred HHHHHHHHHH
Q 003363 813 SFLNIGLWFK 822 (826)
Q Consensus 813 ~~~~i~~w~~ 822 (826)
....+.+|+.
T Consensus 319 ia~~l~~~L~ 328 (329)
T 3tej_A 319 IGPIIRATLN 328 (329)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 5555555553
|
| >1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET: 2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D 1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A 2es4_A 1tah_B 1qge_D 1qge_E | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-08 Score=107.64 Aligned_cols=105 Identities=18% Similarity=0.242 Sum_probs=79.7
Q ss_pred CCCcEEEEEcCCCCCCCC----ccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHc
Q 003363 590 SCDPLIVVLHGGPHSVSL----SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM 665 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~----~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 665 (826)
+..|+||++||....... ..|....+.|+++||.|+++|++|.+. +.. .....+++.+.++.+++.
T Consensus 6 ~~~~~vVlvHG~~~~~~~~~~~~~w~~l~~~L~~~G~~V~~~d~~g~g~---s~~-------~~~~~~~l~~~i~~~l~~ 75 (320)
T 1ys1_X 6 ATRYPIILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSGFQS---DDG-------PNGRGEQLLAYVKTVLAA 75 (320)
T ss_dssp CCSSCEEEECCTTCCSEETTTEESSTTHHHHHHHTTCCEEECCCCSSCC---SSS-------TTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCccccchHHHHHHHHHHHHhCCCEEEEEcCCCCCC---CCC-------CCCCHHHHHHHHHHHHHH
Confidence 456789999997654311 457778899999999999999998443 210 012456666666666655
Q ss_pred CCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCcc
Q 003363 666 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (826)
Q Consensus 666 ~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 706 (826)
++.++|.|+|||+||.++..++.++|++++++|++++..
T Consensus 76 --~~~~~v~lvGHS~GG~va~~~a~~~p~~V~~lV~i~~p~ 114 (320)
T 1ys1_X 76 --TGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTPH 114 (320)
T ss_dssp --HCCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred --hCCCCEEEEEECHhHHHHHHHHHhChhhceEEEEECCCC
Confidence 345789999999999999999999999999999998754
|
| >3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase, cell adhesion, cell J glycoprotein, membrane, postsynaptic cell membrane; HET: NAG; 1.80A {Rattus norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A* 2vh8_A 3bl8_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.2e-09 Score=122.38 Aligned_cols=124 Identities=22% Similarity=0.290 Sum_probs=85.2
Q ss_pred EEEEEEecCCCC---CCCCCcEEEEEcCCCCCCCCcc-chHHHHHHHHC-CcEEEEECCCCCC-CCchhhhhcCCCCCCc
Q 003363 576 FEAIFVSSSHKK---DCSCDPLIVVLHGGPHSVSLSS-YSKSLAFLSSV-GYSLLIVNYRGSL-GFGEEALQSLPGKVGS 649 (826)
Q Consensus 576 l~~~~~~P~~~~---~~~~~P~vv~~HGg~~~~~~~~-~~~~~~~la~~-G~~Vl~~d~rG~~-g~G~~~~~~~~~~~~~ 649 (826)
+...+|.|.... ..++.|+||++|||++...... +.. ..|+++ |++|+.+|||... ||..... ....+.
T Consensus 112 L~l~v~~P~~~~~~~~~~~~Pv~v~iHGGg~~~g~~~~~~~--~~la~~~~~vvv~~~YRl~~~Gfl~~~~---~~~~~n 186 (574)
T 3bix_A 112 LYLNIYVPTEDDIRDSGGPKPVMVYIHGGSYMEGTGNLYDG--SVLASYGNVIVITVNYRLGVLGFLSTGD---QAAKGN 186 (574)
T ss_dssp CEEEEEEEC--------CCEEEEEECCCSSSSSCCGGGSCC--HHHHHHHTCEEEEECCCCHHHHHCCCSS---SSCCCC
T ss_pred CEEEEEECCCCCcCCCCCCCcEEEEECCCcccCCCCCccCc--hhhhccCCEEEEEeCCcCcccccCcCCC---CCCCCc
Confidence 445688887531 2357899999999987654432 222 345554 6999999999532 1211100 011234
Q ss_pred chHHHHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHhCC---CceeEEEecCC
Q 003363 650 QDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNP 704 (826)
Q Consensus 650 ~~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~p 704 (826)
..+.|+.++++|+.++ ...|+++|.|+|+|.||.++..++.... .+|+++|+.+|
T Consensus 187 ~gl~D~~~al~wv~~ni~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~glf~~aI~~Sg 247 (574)
T 3bix_A 187 YGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEKGLFQRAIAQSG 247 (574)
T ss_dssp HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTCTTSCTTSCCEEEEESC
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCchhEEEEeecccHHHHHHHhhCCCcchhHHHHHHHhcC
Confidence 4589999999999986 2479999999999999999988876543 57999998886
|
| >1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP: b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.7e-09 Score=117.85 Aligned_cols=113 Identities=9% Similarity=-0.015 Sum_probs=81.3
Q ss_pred CCCCcEEEEEcCCCCCCCCccchH-HHHHHHH-CCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcC
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYSK-SLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 666 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~-~~~~la~-~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 666 (826)
+...|+||++||++... ...|.. .+..|.+ .||.|+++|+||.+...... . .... ....+|+.+.++++.++.
T Consensus 67 ~~~~p~vvliHG~~~~~-~~~w~~~l~~~l~~~~~~~Vi~~D~~G~G~S~~~~--~-~~~~-~~~~~dl~~li~~L~~~~ 141 (452)
T 1bu8_A 67 QLDRKTRFIVHGFIDKG-EDGWLLDMCKKMFQVEKVNCICVDWRRGSRTEYTQ--A-SYNT-RVVGAEIAFLVQVLSTEM 141 (452)
T ss_dssp CTTSEEEEEECCSCCTT-CTTHHHHHHHHHHTTCCEEEEEEECHHHHSSCHHH--H-HHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCC-CchHHHHHHHHHHhhCCCEEEEEechhcccCchhH--h-HhhH-HHHHHHHHHHHHHHHHhc
Confidence 34568999999977653 245665 4566665 49999999999944322110 0 0000 112567788888887654
Q ss_pred CCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCcc
Q 003363 667 LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (826)
Q Consensus 667 ~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 706 (826)
.++.+++.|+|||+||.+++.++.++|++++++++.+|..
T Consensus 142 g~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1bu8_A 142 GYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE 181 (452)
T ss_dssp CCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCCccceEEEEEChhHHHHHHHHHhcccccceEEEecCCc
Confidence 4667899999999999999999999999999999988754
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-06 Score=94.94 Aligned_cols=84 Identities=10% Similarity=0.065 Sum_probs=51.5
Q ss_pred ceecCCCCEEEEEeccCCCCCCCCc-ccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCC
Q 003363 377 PRFSPDGKFLVFLSAKSSVDSGAHS-ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 455 (826)
Q Consensus 377 p~~SpDG~~l~f~s~~~~~~~g~~~-~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg 455 (826)
..++|||++|+....... .+.|. ...+|+++|+.+++.. ..+.... ....+.|+|||
T Consensus 272 ~~~s~d~~~lyV~~~~~~--~~~~~~~~~~V~VID~~t~~vv----------~~i~~g~----------~p~~i~~s~Dg 329 (373)
T 2mad_H 272 VAYLKSSDGIYLLTSEQS--AWKLHAAAKEVTSVTGLVGQTS----------SQISLGH----------DVDAISVAQDG 329 (373)
T ss_pred EEECCCCCEEEEEeccCC--cccccCCCCeEEEEECCCCEEE----------EEEECCC----------CcCeEEECCCC
Confidence 568899988765443211 01111 2358999998885542 1111110 23477899999
Q ss_pred CEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003363 456 CTMLLSSIWGSSQVIISVNVSSGELLRI 483 (826)
Q Consensus 456 ~~l~~~~~~~~~~~l~~vdl~tg~~~~l 483 (826)
+++++.... +...|..+|++++++...
T Consensus 330 ~~~l~v~~~-~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 330 GPDLYALSA-GTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CeEEEEEcC-CCCeEEEEECCCCCEEee
Confidence 966565442 345789999999887765
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-07 Score=103.73 Aligned_cols=260 Identities=14% Similarity=0.066 Sum_probs=124.9
Q ss_pred EEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcee--EEEecCCCccccccCCCcccceeecC--------CCCeEEE
Q 003363 157 SAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLE--KEFHVPQTVHGSVYADGWFEGISWNS--------DETLIAY 224 (826)
Q Consensus 157 ~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~--~~~~~~~~~~g~v~~~~~~~~~~wSP--------Dg~~ia~ 224 (826)
....++|+++.||..+.+. .+.+|+ .++.. +......+..+.| ..++|+| ||+.||.
T Consensus 93 ~~~~~~~~~~~las~~~d~-----~v~lw~~~~~~~~~~~~~~~~~gH~~~v------~~v~~~p~~~~~~~~d~~~las 161 (393)
T 4gq1_A 93 NVNSSPVYSLFLACVCQDN-----TVRLIITKNETIITQHVLGGKSGHHNFV------NDIDIADVYSADNRLAEQVIAS 161 (393)
T ss_dssp ----CCEEEEEEEEEETTS-----CEEEEEEETTEEEEEEEECTTTSCSSCE------EEEEEEEEECTTCSEEEEEEEE
T ss_pred ceeecCCCCCEEEEEeCCC-----cEEEEECCCCccceeeeecccCCCCCce------EEEEEccccccccCCCCCEEEE
Confidence 3445677787887766543 355662 23222 2233334555555 8999998 9999998
Q ss_pred EeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCce-EeccCCCCCCccceEEEe
Q 003363 225 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWA 303 (826)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~-~~l~~~~~~~~~~~~~wS 303 (826)
.+.+ ..|.+||+.++.. ..+ ......+..++|+
T Consensus 162 ~s~D--------------------------------------------~tv~~Wd~~~~~~~~~~--~~~~~~v~~v~~~ 195 (393)
T 4gq1_A 162 VGDD--------------------------------------------CTLIIWRLTDEGPILAG--YPLSSPGISVQFR 195 (393)
T ss_dssp EETT--------------------------------------------SEEEEEEEETTEEEEEE--EECSSCEEEEEEE
T ss_pred EECC--------------------------------------------CeEEEEECCCCceeeee--cCCCCCcEEEEEC
Confidence 7654 5789999876653 334 3344567789999
Q ss_pred eCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCC---------CCCcceecCCCCccc
Q 003363 304 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSS---------EDLPVVNLTESISSA 374 (826)
Q Consensus 304 PDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~---------~~~~~~~Lt~~~~~~ 374 (826)
|++.. ++.++. .+..|.++|+..+.............. ..........+...+
T Consensus 196 p~~~~----~l~~~~--------------~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v 257 (393)
T 4gq1_A 196 PSNPN----QLIVGE--------------RNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSL 257 (393)
T ss_dssp TTEEE----EEEEEE--------------TTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSC
T ss_pred CCCCc----eEEecC--------------CCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccc
Confidence 99875 555542 223577777632110000000000000 000001112233345
Q ss_pred cCceec-CCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCccc-ccCCCCCCccc
Q 003363 375 FFPRFS-PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGL-YSSSILSNPWL 452 (826)
Q Consensus 375 ~~p~~S-pDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~-~~~~~~~~~ws 452 (826)
....|+ |||++|+-.+.+ ..+.+||+.++...........-+..+....+ ..+. -........|.
T Consensus 258 ~~v~~~~~dg~~l~s~s~d-----------~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 258 ANVRWIGSDGSGILAMCKS-----------GAWLRWNLFANNDYNEISDSTMKLGPKNLLPN--VQGISLFPSLLGACPH 324 (393)
T ss_dssp SEEEEETTTTCEEEEECTT-----------SEEEEEEC-------------------CCSCS--EEEECSSCCSSCCEEC
T ss_pred eeeeeecCCCCEEEEEeCC-----------CCEEEEECccCCCCceEeeecCccccEEEccc--cccccccCcceeEEEc
Confidence 566775 899998766543 45888888765442211111100000000000 0000 00011233343
Q ss_pred c-CCCEEEEEEEeCCeEEEEEEECCCCcEEEe-cCCCCCeeeEEEeecCCEEEEEE
Q 003363 453 S-DGCTMLLSSIWGSSQVIISVNVSSGELLRI-TPAESNFSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 453 ~-Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~l-t~~~~~~~~~~~s~dg~~l~~~~ 506 (826)
+ .++.++++...++ .|..+|..+++.... ......+....|+|||+.|+...
T Consensus 325 ~~~~~~~~~sgs~Dg--~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as 378 (393)
T 4gq1_A 325 PRYMDYFATAHSQHG--LIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIAT 378 (393)
T ss_dssp SSCTTEEEEEETTTT--EEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred cCCCCEEEEEECCCC--EEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence 3 4444544433334 456668877765443 33344566678999999876554
|
| >2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase, biodegradation, catal; HET: PG4; 1.20A {Paucimonas lemoignei} PDB: 2vtv_A* 2x76_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.1e-08 Score=108.20 Aligned_cols=122 Identities=18% Similarity=0.160 Sum_probs=86.4
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCC--------CCccc----hHHHHHHHHCCcE---EEEECCCCCCCCchhhh
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSV--------SLSSY----SKSLAFLSSVGYS---LLIVNYRGSLGFGEEAL 640 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~--------~~~~~----~~~~~~la~~G~~---Vl~~d~rG~~g~G~~~~ 640 (826)
+.|....|. .. ..+.||++||..... ....| ...+..|.++||. |+++|++| +|.+..
T Consensus 28 ~gG~~~~p~---~~-~~~pVVlvHG~~~~~~~~~~~~~~~~~w~~~~~~l~~~L~~~Gy~~~~V~~~D~~g---~G~S~~ 100 (342)
T 2x5x_A 28 YGGFGGGSC---TA-TKTPVIFIHGNGDNAISFDMPPGNVSGYGTPARSVYAELKARGYNDCEIFGVTYLS---SSEQGS 100 (342)
T ss_dssp SCEEECCSS---CC-CSCCEEEECCTTCCGGGGGCCCCCCTTTCCCSSCHHHHHHHTTCCTTSEEEECCSC---HHHHTC
T ss_pred cCcccCCCC---CC-CCCeEEEECCcCCCcccccccccccccccccHHHHHHHHHhCCCCCCeEEEEeCCC---CCccCC
Confidence 345555554 22 334589999966532 13356 6788899999998 99999999 444321
Q ss_pred hcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhC--CCceeEEEecCCccc
Q 003363 641 QSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCN 707 (826)
Q Consensus 641 ~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~~~ 707 (826)
... ........+++.+.++.+++.. ..++|.|+||||||.++..++.++ |++++++|+++|...
T Consensus 101 ~~~-~~~~~~~~~~l~~~I~~l~~~~--g~~~v~LVGHSmGG~iA~~~a~~~~~p~~V~~lVlla~p~~ 166 (342)
T 2x5x_A 101 AQY-NYHSSTKYAIIKTFIDKVKAYT--GKSQVDIVAHSMGVSMSLATLQYYNNWTSVRKFINLAGGIR 166 (342)
T ss_dssp GGG-CCBCHHHHHHHHHHHHHHHHHH--TCSCEEEEEETHHHHHHHHHHHHHTCGGGEEEEEEESCCTT
T ss_pred ccc-cCCHHHHHHHHHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHcCchhhhcEEEEECCCcc
Confidence 110 1112234778888888887763 347899999999999999999988 899999999988654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.1e-07 Score=101.71 Aligned_cols=205 Identities=10% Similarity=0.094 Sum_probs=120.3
Q ss_pred cccEEEEeCC-CCCeEEEEecCCCCCCeEEEEec--C---Cc-e--eEEEecCCCccccccCCCcccceeecCCCCeEEE
Q 003363 154 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWS--Q---SQ-L--EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAY 224 (826)
Q Consensus 154 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~i~~--~---~~-~--~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~ 224 (826)
..+...+||| ||++||..+..+ .+.+|+ . +. . ....... +.| ..++|+||++.|+.
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~~~~~~h~----~~v------~~~~~~~~~~~l~s 128 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSDQG-----VIKIWNLKEIIVGEVYSSSLTYDCS----STV------TQITMIPNFDAFAV 128 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEETTS-----EEEEEEHHHHHTTCCCSCSEEEECS----SCE------EEEEECTTSSEEEE
T ss_pred CceEEEEECCCCCCEEEEecCCc-----eEEEeECcccccCcccceeeeccCC----CCE------EEEEEeCCCCEEEE
Confidence 4588999999 999999876543 566773 2 21 1 1111212 222 89999999999988
Q ss_pred EeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEcc---CCceEecc-C--------CC
Q 003363 225 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ---SGEVQAVK-G--------IP 292 (826)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~---~g~~~~l~-~--------~~ 292 (826)
.+.+ ..|.+||++ +++..... + .+
T Consensus 129 ~s~d--------------------------------------------g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~ 164 (437)
T 3gre_A 129 SSKD--------------------------------------------GQIIVLKVNHYQQESEVKFLNCECIRKINLKN 164 (437)
T ss_dssp EETT--------------------------------------------SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGG
T ss_pred EeCC--------------------------------------------CEEEEEEeccccCCceeeccccceeEEEEccC
Confidence 6543 467777773 44332220 0 00
Q ss_pred --CCCccceE--EEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceec
Q 003363 293 --KSLSVGQV--VWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNL 367 (826)
Q Consensus 293 --~~~~~~~~--~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~L 367 (826)
....+..+ .|+||++. |+..+ .+..|+++|+ .+++ ...+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~----l~~~~---------------~d~~i~iwd~-----------------~~~~~~~~~ 208 (437)
T 3gre_A 165 FGKNEYAVRMRAFVNEEKSL----LVALT---------------NLSRVIIFDI-----------------RTLERLQII 208 (437)
T ss_dssp GSSCCCEEEEEEEECSSCEE----EEEEE---------------TTSEEEEEET-----------------TTCCEEEEE
T ss_pred cccccCceEEEEEEcCCCCE----EEEEe---------------CCCeEEEEeC-----------------CCCeeeEEE
Confidence 11122222 26677775 65554 3347899998 4444 4455
Q ss_pred CC--CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCc-c-cceeeeeeeeeccCCCCCccccc
Q 003363 368 TE--SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS-L-EKIVDVIPVVQCAEGDCFPGLYS 443 (826)
Q Consensus 368 t~--~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~-~-~~~~~~~~~~~~~~~~~f~g~~~ 443 (826)
.. +...+....|+|||++|+..+.+ ..|.+||+.++..... . .....+..+.
T Consensus 209 ~~~~h~~~v~~~~~s~~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~------------- 264 (437)
T 3gre_A 209 ENSPRHGAVSSICIDEECCVLILGTTR-----------GIIDIWDIRFNVLIRSWSFGDHAPITHVE------------- 264 (437)
T ss_dssp ECCGGGCCEEEEEECTTSCEEEEEETT-----------SCEEEEETTTTEEEEEEBCTTCEEEEEEE-------------
T ss_pred ccCCCCCceEEEEECCCCCEEEEEcCC-----------CeEEEEEcCCccEEEEEecCCCCceEEEE-------------
Confidence 44 45678889999999998876654 3589999887543211 1 1111111110
Q ss_pred CCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003363 444 SSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 483 (826)
Q Consensus 444 ~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~l 483 (826)
..+.|++|++.|+ +. ..+..|..+|+.+++....
T Consensus 265 ---~~~~~s~~~~~l~-s~--~~dg~i~iwd~~~~~~~~~ 298 (437)
T 3gre_A 265 ---VCQFYGKNSVIVV-GG--SSKTFLTIWNFVKGHCQYA 298 (437)
T ss_dssp ---ECTTTCTTEEEEE-EE--STTEEEEEEETTTTEEEEE
T ss_pred ---eccccCCCccEEE-EE--cCCCcEEEEEcCCCcEEEE
Confidence 1236778886543 33 3445677778888775543
|
| >1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET: DDQ; 2.99A {Equus caballus} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.3e-09 Score=116.24 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=80.3
Q ss_pred CCCcEEEEEcCCCCCCCCccchH-HHHHHHHC-CcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSK-SLAFLSSV-GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~-~~~~la~~-G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (826)
...|+||++||.+... ...|.. .+..|.++ ||.|+++|+||.+...... . ... -....+|+.+.++++.++..
T Consensus 68 ~~~p~vvliHG~~~~~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g~G~S~~~~--~-~~~-~~~~~~dl~~~i~~L~~~~g 142 (452)
T 1w52_X 68 SSRKTHFVIHGFRDRG-EDSWPSDMCKKILQVETTNCISVDWSSGAKAEYTQ--A-VQN-IRIVGAETAYLIQQLLTELS 142 (452)
T ss_dssp TTSCEEEEECCTTCCS-SSSHHHHHHHHHHTTSCCEEEEEECHHHHTSCHHH--H-HHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEcCCCCCC-CchHHHHHHHHHHhhCCCEEEEEecccccccccHH--H-HHh-HHHHHHHHHHHHHHHHHhcC
Confidence 4568999999977553 245655 55667654 9999999999844322110 0 000 01124677788888876533
Q ss_pred CCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCcc
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 706 (826)
++.+++.|+|||+||.++..++.++|++++++++.+|..
T Consensus 143 ~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1w52_X 143 YNPENVHIIGHSLGAHTAGEAGRRLEGRVGRVTGLDPAE 181 (452)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCcccEEEEEeCHHHHHHHHHHHhcccceeeEEeccccc
Confidence 567899999999999999999999999999999988754
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=98.78 E-value=8.4e-08 Score=101.39 Aligned_cols=229 Identities=11% Similarity=0.064 Sum_probs=125.2
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCC-ccceeecCCcceecccEEEEeCC--CCCeEEEEecCCCCCCeE
Q 003363 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENEN-SVTFQWAPFPVEMTGASAVVPSP--SGSKLLVVRNPENESPIQ 181 (826)
Q Consensus 105 s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~-~~~lt~~~~~~~~~~~~~~~~SP--dG~~la~~~~~~~~~~~~ 181 (826)
+|||++|+-.. .+..+.++++...... ...|.... ..+...+|+| +|+.|+..+..+ .
T Consensus 22 s~~g~~lasgs---------~D~~v~lwd~~~~~~~~~~~l~gH~-----~~V~~v~~~~~~~~~~l~s~s~D~-----~ 82 (316)
T 3bg1_A 22 DYYGTRLATCS---------SDRSVKIFDVRNGGQILIADLRGHE-----GPVWQVAWAHPMYGNILASCSYDR-----K 82 (316)
T ss_dssp CGGGCEEEEEE---------TTTEEEEEEEETTEEEEEEEEECCS-----SCEEEEEECCGGGSSCEEEEETTS-----C
T ss_pred cCCCCEEEEEe---------CCCeEEEEEecCCCcEEEEEEcCCC-----ccEEEEEeCCCCCCCEEEEEECCC-----E
Confidence 78888775432 3345666666433111 12233232 4588999987 488888776543 4
Q ss_pred EEEec--CCceeEEEecCCCccccccCCCcccceeecCC--CCeEEEEeecCCCCCCCccCCCC-CCCCCCccCCCCCCc
Q 003363 182 FELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPSPSKPTFSLGST-KGGSSDKDCNSWKGQ 256 (826)
Q Consensus 182 ~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPD--g~~ia~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 256 (826)
+.+|+ .+....+..+ .+..+.| ..++|+|| |+.|+..+.+.....+....... ........+......
T Consensus 83 v~iWd~~~~~~~~~~~~-~~h~~~V------~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~ 155 (316)
T 3bg1_A 83 VIIWREENGTWEKSHEH-AGHDSSV------NSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNA 155 (316)
T ss_dssp EEEECCSSSCCCEEEEE-CCCSSCC------CEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCC
T ss_pred EEEEECCCCcceEEEEc-cCCCCce------EEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcce
Confidence 66773 2322222222 1222233 79999998 78888877766443221111000 001112223333444
Q ss_pred ceeecCC-----------------CccCCCccCceEEEEEccCCc-eEeccC-CCCCCccceEEEeeCC----CCCccEE
Q 003363 257 GDWEEDW-----------------GETYAGKRQPSLFVININSGE-VQAVKG-IPKSLSVGQVVWAPLN----EGLHQYL 313 (826)
Q Consensus 257 ~~~~~d~-----------------g~~~~~~~~~~l~v~d~~~g~-~~~l~~-~~~~~~~~~~~wSPDg----~~~~~~l 313 (826)
..|.++. ....++..+..|.+||+.++. .+.+.. ......+..++|+||+ +. |
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~----l 231 (316)
T 3bg1_A 156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTST----I 231 (316)
T ss_dssp CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCE----E
T ss_pred EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCce----E
Confidence 5565542 123455567789999987542 222210 2233467889999997 43 5
Q ss_pred EEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCC--cceecCCCCccccCceecCCCCEEEEEec
Q 003363 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (826)
Q Consensus 314 vf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~ 391 (826)
+..+ .+..|.++++... ..+ ....+..+...+...+|||||++|+..+.
T Consensus 232 as~s---------------~D~~v~iw~~~~~--------------~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~ 282 (316)
T 3bg1_A 232 ASCS---------------QDGRVFIWTCDDA--------------SSNTWSPKLLHKFNDVVWHVSWSITANILAVSGG 282 (316)
T ss_dssp EEEE---------------TTCEEEEEECSST--------------TCCCCBCCEEEECSSCEEEEEECTTTCCEEEEES
T ss_pred EEEc---------------CCCeEEEEEccCc--------------cccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcC
Confidence 5544 2336778887210 001 12233344566788999999999987775
Q ss_pred c
Q 003363 392 K 392 (826)
Q Consensus 392 ~ 392 (826)
+
T Consensus 283 D 283 (316)
T 3bg1_A 283 D 283 (316)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-08 Score=108.30 Aligned_cols=207 Identities=13% Similarity=0.082 Sum_probs=112.6
Q ss_pred EEEEEcC--CCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHH-HHHHHcCCCCC
Q 003363 594 LIVVLHG--GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI-DHVIDMGLANP 670 (826)
Q Consensus 594 ~vv~~HG--g~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i-~~l~~~~~~d~ 670 (826)
.|+++|| ++.. ...|...+..|. .+|.|+.+|++|.+. +... ........++++.+.+ +.+.+. .+.
T Consensus 91 ~l~~~hg~g~~~~--~~~~~~l~~~L~-~~~~v~~~d~~G~g~---~~~~--~~~~~~~~~~~~a~~~~~~i~~~--~~~ 160 (319)
T 2hfk_A 91 VLVGCTGTAANGG--PHEFLRLSTSFQ-EERDFLAVPLPGYGT---GTGT--GTALLPADLDTALDAQARAILRA--AGD 160 (319)
T ss_dssp EEEEECCCCTTCS--TTTTHHHHHTTT-TTCCEEEECCTTCCB---C-----CBCCEESSHHHHHHHHHHHHHHH--HTT
T ss_pred cEEEeCCCCCCCc--HHHHHHHHHhcC-CCCceEEecCCCCCC---Cccc--ccCCCCCCHHHHHHHHHHHHHHh--cCC
Confidence 7999997 3322 446777777775 689999999999443 2000 0001112344433332 222222 123
Q ss_pred CcEEEEEecchHHHHHHHHHhC----CCceeEEEecCCccchhhhccCCCCCCch--hhhhccCcCCccCCCCCChhhH-
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQA----PDKFVAAAARNPLCNLALMVGTTDIPDWC--YVESYGSKGKDSFTESPSVEDL- 743 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~----p~~~~a~v~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~- 743 (826)
.++.|+|||+||.++..+|.++ ++.++++++.++........ ...+. ........ .+.. ......
T Consensus 161 ~p~~l~G~S~GG~vA~~~A~~l~~~~g~~v~~lvl~d~~~~~~~~~----~~~~~~~l~~~~~~~---~~~~-~~~~~~~ 232 (319)
T 2hfk_A 161 APVVLLGHAGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEP----IEVWSRQLGEGLFAG---ELEP-MSDARLL 232 (319)
T ss_dssp SCEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCCCTTSCHH----HHHTHHHHHHHHHHT---CSSC-CCHHHHH
T ss_pred CCEEEEEECHHHHHHHHHHHHHHHhhCCCceEEEEeCCCCCCchhH----HHHHHHHhhHHHHHh---hccc-cchHHHH
Confidence 6799999999999999999876 45688888887643210000 00000 00000000 0000 011111
Q ss_pred --HHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHH-HHHHHHHHHhC-CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 003363 744 --TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSN-GLQYARALREK-GVETKVIVFPNDVHGIERPQSDFESFLNIGL 819 (826)
Q Consensus 744 --~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~-~~~~~~~l~~~-g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~ 819 (826)
..+...-.......+++|+|+++| .|..++... ... +... ...++++.++ ++|.....+....+...+.+
T Consensus 233 ~~~~~~~~~~~~~~~~i~~Pvl~i~g-~D~~~~~~~~~~~----~~~~~~~~~~~~~v~-g~H~~~~~e~~~~~~~~i~~ 306 (319)
T 2hfk_A 233 AMGRYARFLAGPRPGRSSAPVLLVRA-SEPLGDWQEERGD----WRAHWDLPHTVADVP-GDHFTMMRDHAPAVAEAVLS 306 (319)
T ss_dssp HHHHHHHHHHSCCCCCCCSCEEEEEE-SSCSSCCCGGGCC----CSCCCSSCSEEEEES-SCTTHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCCCEEEEEc-CCCCCCccccccc----hhhcCCCCCEEEEeC-CCcHHHHHHhHHHHHHHHHH
Confidence 111110000123678899999999 999888754 222 2221 2247888998 58874332255678888999
Q ss_pred HHHHH
Q 003363 820 WFKKY 824 (826)
Q Consensus 820 w~~~~ 824 (826)
|+.+.
T Consensus 307 ~L~~~ 311 (319)
T 2hfk_A 307 WLDAI 311 (319)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99764
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.76 E-value=8.2e-08 Score=108.68 Aligned_cols=162 Identities=7% Similarity=-0.051 Sum_probs=96.5
Q ss_pred ceEEEEEccCCceE------------eccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEE
Q 003363 273 PSLFVININSGEVQ------------AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 340 (826)
Q Consensus 273 ~~l~v~d~~~g~~~------------~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~ 340 (826)
..|.+||+.+++.. .+ ......+..++|+|++ . |+..+ .+..|.++
T Consensus 235 gtvrlWd~~~~~~~~~~~~~~~~p~~~l--~~h~~~v~sv~~s~~~-~----lasgs---------------~DgtV~lW 292 (524)
T 2j04_B 235 GTINFLEIIDNATDVHVFKMCEKPSLTL--SLADSLITTFDFLSPT-T----VVCGF---------------KNGFVAEF 292 (524)
T ss_dssp SCEEEEECCCCSSSSSEEECCCSCSEEE--CCTTTCEEEEEESSSS-E----EEEEE---------------TTSEEEEE
T ss_pred CeEEEEEcCCCccccccceeecCceEEE--EcCCCCEEEEEecCCC-e----EEEEe---------------CCCEEEEE
Confidence 45777887665321 22 2233467789999864 4 66655 33478899
Q ss_pred EcccccchhhhhhhhcCCCCCC-c-ceecCCCCccccCc--eecCCC-CEEEEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 341 RVSLYKSEASELELKESSSEDL-P-VVNLTESISSAFFP--RFSPDG-KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~-~-~~~Lt~~~~~~~~p--~~SpDG-~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
|+ .++ . ...+..+...+... .|+||| +.|+-.+.+ ..|.+||+.++.
T Consensus 293 D~-----------------~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D-----------~tvklWD~~~~~ 344 (524)
T 2j04_B 293 DL-----------------TDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVD-----------GYFYIFNPKDIA 344 (524)
T ss_dssp ET-----------------TBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETT-----------SEEEEECGGGHH
T ss_pred EC-----------------CCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccC-----------CeEEEEECCCCC
Confidence 98 433 2 23456666677777 689998 666655544 468899986643
Q ss_pred CCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcE-EEecCCCCCeeeEE
Q 003363 416 NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL-LRITPAESNFSWSL 494 (826)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~-~~lt~~~~~~~~~~ 494 (826)
......+. .. ...+..++|+||++.++ ++..++ .+..+|+.++.. ..+......+....
T Consensus 345 ~~~~~~~~--------------~~---~~~v~~v~fsp~~~~l~-s~~~d~--tv~lwd~~~~~~~~~l~gH~~~V~sva 404 (524)
T 2j04_B 345 TTKTTVSR--------------FR---GSNLVPVVYCPQIYSYI-YSDGAS--SLRAVPSRAAFAVHPLVSRETTITAIG 404 (524)
T ss_dssp HHCEEEEE--------------CS---CCSCCCEEEETTTTEEE-EECSSS--EEEEEETTCTTCCEEEEECSSCEEEEE
T ss_pred cccccccc--------------cc---cCcccceEeCCCcCeEE-EeCCCC--cEEEEECcccccceeeecCCCceEEEE
Confidence 21100000 00 01245678999998654 333333 456668877764 44555555566678
Q ss_pred EeecCCEEEE
Q 003363 495 LTLDGDNIIA 504 (826)
Q Consensus 495 ~s~dg~~l~~ 504 (826)
|+|++..|+.
T Consensus 405 ~Sp~g~~l~S 414 (524)
T 2j04_B 405 VSRLHPMVLA 414 (524)
T ss_dssp CCSSCCBCEE
T ss_pred eCCCCCeEEE
Confidence 8998876543
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.75 E-value=2e-06 Score=91.76 Aligned_cols=156 Identities=12% Similarity=0.043 Sum_probs=98.4
Q ss_pred ccEEEEeCC--CCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCC
Q 003363 155 GASAVVPSP--SGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (826)
Q Consensus 155 ~~~~~~~SP--dG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~ 230 (826)
.+...+|+| +|++++..+..+ .+.+|+ .++..+.... ..... +..++|+|||+.||..+.
T Consensus 127 ~v~~~~~~~~~~~~~l~s~s~dg-----~i~~wd~~~~~~~~~~~~--~~~~~------i~~~~~~pdg~~lasg~~--- 190 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWADNRG-----TIGFQSYEDDSQYIVHSA--KSDVE------YSSGVLHKDSLLLALYSP--- 190 (343)
T ss_dssp CEEEEECCC---CCEEEEEETTC-----CEEEEESSSSCEEEEECC--CSSCC------CCEEEECTTSCEEEEECT---
T ss_pred CEEEEEcCCCCCCCEEEEEeCCC-----cEEEEECCCCcEEEEEec--CCCCc------eEEEEECCCCCEEEEEcC---
Confidence 488899999 999998876543 456663 3333332221 11112 278999999998887543
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceE--eccCCCCCCccceEEEeeCCCC
Q 003363 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ--AVKGIPKSLSVGQVVWAPLNEG 308 (826)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~--~l~~~~~~~~~~~~~wSPDg~~ 308 (826)
+..|.+||+.+++.. .+. ......+..++|+|||+.
T Consensus 191 -----------------------------------------dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~l~fs~~g~~ 228 (343)
T 3lrv_A 191 -----------------------------------------DGILDVYNLSSPDQASSRFP-VDEEAKIKEVKFADNGYW 228 (343)
T ss_dssp -----------------------------------------TSCEEEEESSCTTSCCEECC-CCTTSCEEEEEECTTSSE
T ss_pred -----------------------------------------CCEEEEEECCCCCCCccEEe-ccCCCCEEEEEEeCCCCE
Confidence 257999999988754 442 113557889999999997
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc-eecCC---CCccc--cCceecCC
Q 003363 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTE---SISSA--FFPRFSPD 382 (826)
Q Consensus 309 ~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~---~~~~~--~~p~~SpD 382 (826)
|+..+. . .|.++|+ ..+.. ..+.. +.... ....|+||
T Consensus 229 ----l~s~~~---------------~-~v~iwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (343)
T 3lrv_A 229 ----MVVECD---------------Q-TVVCFDL-----------------RKDVGTLAYPTYTIPEFKTGTVTYDIDDS 271 (343)
T ss_dssp ----EEEEES---------------S-BEEEEET-----------------TSSTTCBSSCCCBC-----CCEEEEECTT
T ss_pred ----EEEEeC---------------C-eEEEEEc-----------------CCCCcceeecccccccccccceEEEECCC
Confidence 766651 1 6888898 33322 22222 21222 24899999
Q ss_pred CCEEEEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 383 G~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
|++|+..+..+ ..+.+|++..+.
T Consensus 272 g~~l~~~s~~d----------~~i~v~~~~~~~ 294 (343)
T 3lrv_A 272 GKNMIAYSNES----------NSLTIYKFDKKT 294 (343)
T ss_dssp SSEEEEEETTT----------TEEEEEEECTTT
T ss_pred CCEEEEecCCC----------CcEEEEEEcccc
Confidence 99998766522 357777776543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.75 E-value=1e-06 Score=91.92 Aligned_cols=253 Identities=10% Similarity=-0.020 Sum_probs=135.6
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCe
Q 003363 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 180 (826)
Q Consensus 101 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 180 (826)
.+.++|||+.+.++... ...|+.++. .++ ...+.... ......+++|||+.++.. . +...
T Consensus 32 g~~~d~~g~~l~~~~~~--------~~~i~~~~~--~~~-~~~~~~~~-----~~~~~l~~~~dg~l~v~~-~---~~~~ 91 (296)
T 3e5z_A 32 GPVYVPARSAVIFSDVR--------QNRTWAWSD--DGQ-LSPEMHPS-----HHQNGHCLNKQGHLIACS-H---GLRR 91 (296)
T ss_dssp EEEEEGGGTEEEEEEGG--------GTEEEEEET--TSC-EEEEESSC-----SSEEEEEECTTCCEEEEE-T---TTTE
T ss_pred CCeEeCCCCEEEEEeCC--------CCEEEEEEC--CCC-eEEEECCC-----CCcceeeECCCCcEEEEe-c---CCCe
Confidence 34557888877665322 235666654 222 33333222 346788999999854432 2 1234
Q ss_pred EEEEec-CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeec-CCCCCCCccCCCCCCCCCCccCCCCCCcce
Q 003363 181 QFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE-PSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 258 (826)
Q Consensus 181 ~~~i~~-~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (826)
++.+.. .++.+.+........ ......+.++|||+ |+++... ..... +..
T Consensus 92 i~~~d~~~g~~~~~~~~~~~~~-----~~~~~~i~~d~~G~-l~vtd~~~g~~~~--~~~-------------------- 143 (296)
T 3e5z_A 92 LERQREPGGEWESIADSFEGKK-----LNSPNDVCLAPDGS-LWFSDPTYGIDKP--EEG-------------------- 143 (296)
T ss_dssp EEEECSTTCCEEEEECEETTEE-----CCCCCCEEECTTSC-EEEEECSHHHHCG--GGS--------------------
T ss_pred EEEEcCCCCcEEEEeeccCCCC-----CCCCCCEEECCCCC-EEEECCccccccc--ccc--------------------
Confidence 665553 666555443211110 00125789999997 4443110 00000 000
Q ss_pred eecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceE
Q 003363 259 WEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (826)
Q Consensus 259 ~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~ 338 (826)
...........||.++.+ ++++.+ .........++|+|||+. | +... ....|+
T Consensus 144 -----~~~~~~~~~~~l~~~~~~-g~~~~~--~~~~~~~~gi~~s~dg~~----l-v~~~--------------~~~~i~ 196 (296)
T 3e5z_A 144 -----YGGEMELPGRWVFRLAPD-GTLSAP--IRDRVKPNGLAFLPSGNL----L-VSDT--------------GDNATH 196 (296)
T ss_dssp -----SCCCCCSSSCEEEEECTT-SCEEEE--ECCCSSEEEEEECTTSCE----E-EEET--------------TTTEEE
T ss_pred -----ccccccCCCcEEEEECCC-CCEEEe--ecCCCCCccEEECCCCCE----E-EEeC--------------CCCeEE
Confidence 000000123579999987 777666 333335568999999997 6 4431 223788
Q ss_pred EEEcccccchhhhhhhhcCCCCCCcc----eecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCC
Q 003363 339 AVRVSLYKSEASELELKESSSEDLPV----VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (826)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~----~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~ 414 (826)
++++. .++.. +.+....+......+++||+ | |++. . ..|+++|.++
T Consensus 197 ~~~~~----------------~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l-~v~~-~----------~~v~~~~~~g- 246 (296)
T 3e5z_A 197 RYCLN----------------ARGETEYQGVHFTVEPGKTDGLRVDAGGL-I-WASA-G----------DGVHVLTPDG- 246 (296)
T ss_dssp EEEEC----------------SSSCEEEEEEEECCSSSCCCSEEEBTTSC-E-EEEE-T----------TEEEEECTTS-
T ss_pred EEEEC----------------CCCcCcCCCeEeeCCCCCCCeEEECCCCC-E-EEEc-C----------CeEEEECCCC-
Confidence 88872 13333 22222233456789999998 3 3332 2 3589998753
Q ss_pred CCCCcccceeeeeeeeeccCCCCCcccccCCCCCCcc-ccCCCEEEEEEEeCCeEEEEEEECCCCcEEE
Q 003363 415 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW-LSDGCTMLLSSIWGSSQVIISVNVSSGELLR 482 (826)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~w-s~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~ 482 (826)
+.. ..+..+. .+..++| ++|++.|++++. ..||++++.+++++.
T Consensus 247 ~~~----------~~~~~~~----------~~~~~~f~~~d~~~L~v~t~----~~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 247 DEL----------GRVLTPQ----------TTSNLCFGGPEGRTLYMTVS----TEFWSIETNVRGLEH 291 (296)
T ss_dssp CEE----------EEEECSS----------CCCEEEEESTTSCEEEEEET----TEEEEEECSCCBCCC
T ss_pred CEE----------EEEECCC----------CceeEEEECCCCCEEEEEcC----CeEEEEEcccccccc
Confidence 211 1111110 1235677 589998887753 269999998877653
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.74 E-value=7.5e-07 Score=95.98 Aligned_cols=99 Identities=14% Similarity=0.053 Sum_probs=57.3
Q ss_pred CceecCCCCEEEEEeccCCCCCCCCc-ccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccC
Q 003363 376 FPRFSPDGKFLVFLSAKSSVDSGAHS-ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 454 (826)
Q Consensus 376 ~p~~SpDG~~l~f~s~~~~~~~g~~~-~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~D 454 (826)
...|+|||++++........ .+.+. ....|+++|+.+++.. ..+... . ...+.|+||
T Consensus 258 ~~a~~~dg~~lyv~~~~~~~-~~~~~~~~~~v~viD~~t~~~v----------~~i~~~----------~-p~~ia~spd 315 (361)
T 2oiz_A 258 LVGLHRASGRMYVFMHPDGK-EGTHKFPAAEIWVMDTKTKQRV----------ARIPGR----------D-ALSMTIDQQ 315 (361)
T ss_dssp CEEEETTTTEEEEEEESSCC-TTCTTCCCSEEEEEETTTTEEE----------EEEECT----------T-CCEEEEETT
T ss_pred EEEEecCCCeEEEEEccCCC-cccccCCCceEEEEECCCCcEE----------EEEecC----------C-eeEEEECCC
Confidence 35899999987654331100 01111 2358999998885432 111111 0 346789999
Q ss_pred CCEEEEEEEeCCeEEEEEEECCCC--cEEEe-cCCCCCeeeEEEeecCC
Q 003363 455 GCTMLLSSIWGSSQVIISVNVSSG--ELLRI-TPAESNFSWSLLTLDGD 500 (826)
Q Consensus 455 g~~l~~~~~~~~~~~l~~vdl~tg--~~~~l-t~~~~~~~~~~~s~dg~ 500 (826)
|++||.+ .. ..|..+|++++ ++... ...........++|+|+
T Consensus 316 g~~l~v~-n~---~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 316 RNLMLTL-DG---GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TTEEEEE-CS---SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CCEEEEe-CC---CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 9977644 32 56777799999 65443 22222334557788875
|
| >3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=7.2e-08 Score=105.44 Aligned_cols=109 Identities=20% Similarity=0.204 Sum_probs=72.4
Q ss_pred CCcEEEEEcCCCCCCCCccc--hHHHHHHH-HCCcEEEEECCCCCCCCchhhhhc--C---CCCCC----cchHHHHHHH
Q 003363 591 CDPLIVVLHGGPHSVSLSSY--SKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQS--L---PGKVG----SQDVNDVLTA 658 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~--~~~~~~la-~~G~~Vl~~d~rG~~g~G~~~~~~--~---~~~~~----~~~~~D~~~~ 658 (826)
..| ||++|||.+.... .+ ......|+ +.|+.|+++|+||. |++.... . ..+.+ ...++|+...
T Consensus 38 g~P-i~l~~Ggeg~~~~-~~~~~g~~~~lA~~~~~~Vi~~DhRg~---G~S~p~~~~~~~~~~~l~~lt~~q~~~Dl~~~ 112 (446)
T 3n2z_B 38 GGS-ILFYTGNEGDIIW-FCNNTGFMWDVAEELKAMLVFAEHRYY---GESLPFGDNSFKDSRHLNFLTSEQALADFAEL 112 (446)
T ss_dssp TCE-EEEEECCSSCHHH-HHHHCHHHHHHHHHHTEEEEEECCTTS---TTCCTTGGGGGSCTTTSTTCSHHHHHHHHHHH
T ss_pred CCC-EEEEeCCCCcchh-hhhcccHHHHHHHHhCCcEEEEecCCC---CCCCCCCccccccchhhccCCHHHHHHHHHHH
Confidence 346 6667888765211 11 12233343 45899999999994 4442110 0 11111 2347888888
Q ss_pred HHHHHHcC-CCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCC
Q 003363 659 IDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 704 (826)
Q Consensus 659 i~~l~~~~-~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p 704 (826)
++++.... .....++.++||||||.++++++.++|+++.++|+.++
T Consensus 113 ~~~l~~~~~~~~~~p~il~GhS~GG~lA~~~~~~yP~~v~g~i~ssa 159 (446)
T 3n2z_B 113 IKHLKRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASA 159 (446)
T ss_dssp HHHHHHHSTTGGGCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETC
T ss_pred HHHHHHhcccCCCCCEEEEEeCHHHHHHHHHHHhhhccccEEEEecc
Confidence 88887652 22346899999999999999999999999999988664
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.69 E-value=8.5e-07 Score=98.96 Aligned_cols=271 Identities=8% Similarity=0.005 Sum_probs=151.7
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCcc
Q 003363 160 VPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 237 (826)
Q Consensus 160 ~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~ 237 (826)
.++++|++|+..+..+ .+.+|+ .++...... +..+.| ..+.|+||+ .|+..+.+.... .|+
T Consensus 127 ~~~~~~~~l~sgs~dg-----~i~vwd~~~~~~~~~~~---~h~~~V------~~l~~~~~~-~l~s~s~dg~i~--vwd 189 (464)
T 3v7d_B 127 CLQFEDNYVITGADDK-----MIRVYDSINKKFLLQLS---GHDGGV------WALKYAHGG-ILVSGSTDRTVR--VWD 189 (464)
T ss_dssp EEEEETTEEEEEETTS-----CEEEEETTTTEEEEEEC---CCSSCE------EEEEECSTT-EEEEEETTSCEE--EEE
T ss_pred EEEECCCEEEEEcCCC-----cEEEEECCCCcEEEEEe---CCCcCE------EEEEEcCCC-EEEEEeCCCCEE--EEE
Confidence 4455788888766543 466774 333333222 333333 789999999 777777666543 333
Q ss_pred CCCCCCCCCCccCCCCCCcceee--cCCCccCCCccCceEEEEEccCCceEeccCCC--------------------CCC
Q 003363 238 LGSTKGGSSDKDCNSWKGQGDWE--EDWGETYAGKRQPSLFVININSGEVQAVKGIP--------------------KSL 295 (826)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~--~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~--------------------~~~ 295 (826)
............+........|. ++....+++.....|.+||+.+++........ ...
T Consensus 190 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (464)
T 3v7d_B 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269 (464)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC
T ss_pred CCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc
Confidence 22222112222333344444455 33233455556788999999877532210000 000
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccc
Q 003363 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSA 374 (826)
Q Consensus 296 ~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~ 374 (826)
...-.+++|+++. |+..+ .+..|+.+|+ .+++ ...+..+...+
T Consensus 270 ~~~v~~~~~~~~~----l~~~~---------------~d~~i~vwd~-----------------~~~~~~~~~~~~~~~v 313 (464)
T 3v7d_B 270 MASVRTVSGHGNI----VVSGS---------------YDNTLIVWDV-----------------AQMKCLYILSGHTDRI 313 (464)
T ss_dssp SSCEEEEEEETTE----EEEEE---------------TTSCEEEEET-----------------TTTEEEEEECCCSSCE
T ss_pred cceEEEEcCCCCE----EEEEe---------------CCCeEEEEEC-----------------CCCcEEEEecCCCCCE
Confidence 1112356788886 66555 3347889998 4443 45566667778
Q ss_pred cCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccC
Q 003363 375 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 454 (826)
Q Consensus 375 ~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~D 454 (826)
....|+|||++|+..+.+ ..|++||+.+++........ ...+..+.|+
T Consensus 314 ~~~~~~~~~~~l~sg~~d-----------g~i~vwd~~~~~~~~~~~~h-------------------~~~v~~~~~~-- 361 (464)
T 3v7d_B 314 YSTIYDHERKRCISASMD-----------TTIRIWDLENGELMYTLQGH-------------------TALVGLLRLS-- 361 (464)
T ss_dssp EEEEEETTTTEEEEEETT-----------SCEEEEETTTTEEEEEECCC-------------------SSCEEEEEEC--
T ss_pred EEEEEcCCCCEEEEEeCC-----------CcEEEEECCCCcEEEEEeCC-------------------CCcEEEEEEc--
Confidence 889999999998866644 35899998875532111110 1122344565
Q ss_pred CCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 455 GCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 455 g~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
++.| ++...++. |..+|+.+++...............+++++..++... + ..+.+.++.++
T Consensus 362 ~~~l-~s~s~dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d----g~i~iwd~~~g 422 (464)
T 3v7d_B 362 DKFL-VSAAADGS--IRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-E----NQFNIYNLRSG 422 (464)
T ss_dssp SSEE-EEEETTSE--EEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-T----TEEEEEETTTC
T ss_pred CCEE-EEEeCCCc--EEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-C----CeEEEEECCCC
Confidence 4544 44444444 5566887776554444444445567888888655443 2 35777776554
|
| >2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A {Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-08 Score=110.39 Aligned_cols=112 Identities=16% Similarity=0.199 Sum_probs=81.1
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCc---EEEEECCCCCCCCchhh-------------hh-----------
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY---SLLIVNYRGSLGFGEEA-------------LQ----------- 641 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~---~Vl~~d~rG~~g~G~~~-------------~~----------- 641 (826)
....|.||++||.+.. ...|...+..|+++|| .|+++|++| +|.+. ..
T Consensus 19 ~~~~ppVVLlHG~g~s--~~~w~~la~~La~~Gy~~~~Via~DlpG---~G~S~~~~~Dv~~~G~~~~~G~n~~p~id~~ 93 (484)
T 2zyr_A 19 AEDFRPVVFVHGLAGS--AGQFESQGMRFAANGYPAEYVKTFEYDT---ISWALVVETDMLFSGLGSEFGLNISQIIDPE 93 (484)
T ss_dssp --CCCCEEEECCTTCC--GGGGHHHHHHHHHTTCCGGGEEEECCCH---HHHHHHTTTSTTTTTGGGHHHHHHGGGSCHH
T ss_pred CCCCCEEEEECCCCCC--HHHHHHHHHHHHHcCCCcceEEEEECCC---CCccccccccccccccccccccccccccccc
Confidence 3456779999997655 5578889999999999 799999998 44320 00
Q ss_pred ----c-CCC--CCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCC---CceeEEEecCCccc
Q 003363 642 ----S-LPG--KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCN 707 (826)
Q Consensus 642 ----~-~~~--~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~p~~~ 707 (826)
. ... .......+++.+.++.+++.. +.+++.|+||||||.+++.++.++| ++++++|+++|..+
T Consensus 94 ~l~~v~~~~~~~~~~~~~~dla~~L~~ll~~l--g~~kV~LVGHSmGG~IAl~~A~~~Pe~~~~V~~LVlIapp~~ 167 (484)
T 2zyr_A 94 TLDKILSKSRERLIDETFSRLDRVIDEALAES--GADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDGVWG 167 (484)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHTCHHHHHTEEEEEEESCCCS
T ss_pred cccccccccccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHCccchhhhCEEEEECCccc
Confidence 0 000 001123567777788877763 3478999999999999999999987 48999999988654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.67 E-value=3.1e-06 Score=89.79 Aligned_cols=254 Identities=6% Similarity=-0.014 Sum_probs=134.9
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCe
Q 003363 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 180 (826)
Q Consensus 101 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 180 (826)
.+.+++||+ +.+.. . ....|+.++. .+++.+.+.... ...+...+++|||+.++......+....
T Consensus 49 ~~~~~~~g~-l~~~~-~-------~~~~i~~~d~--~~~~~~~~~~~~----~~~~~~i~~~~dg~l~v~~~~~~~~~~~ 113 (333)
T 2dg1_A 49 GLNFDRQGQ-LFLLD-V-------FEGNIFKINP--ETKEIKRPFVSH----KANPAAIKIHKDGRLFVCYLGDFKSTGG 113 (333)
T ss_dssp EEEECTTSC-EEEEE-T-------TTCEEEEECT--TTCCEEEEEECS----SSSEEEEEECTTSCEEEEECTTSSSCCE
T ss_pred CcEECCCCC-EEEEE-C-------CCCEEEEEeC--CCCcEEEEeeCC----CCCcceEEECCCCcEEEEeCCCCCCCce
Confidence 344578887 43432 1 2245666653 333444333211 1357788999999755443322112245
Q ss_pred EEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCccee
Q 003363 181 QFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (826)
Q Consensus 181 ~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (826)
++.++ .++....+.... .. ......+.++|||+ |++.......
T Consensus 114 i~~~d~~~~~~~~~~~~~-~~------~~~~~~i~~d~~g~-l~v~~~~~~~---------------------------- 157 (333)
T 2dg1_A 114 IFAATENGDNLQDIIEDL-ST------AYCIDDMVFDSKGG-FYFTDFRGYS---------------------------- 157 (333)
T ss_dssp EEEECTTSCSCEEEECSS-SS------CCCEEEEEECTTSC-EEEEECCCBT----------------------------
T ss_pred EEEEeCCCCEEEEEEccC-cc------CCcccceEECCCCC-EEEEeccccc----------------------------
Confidence 77666 444444333211 11 11236889999996 4444321100
Q ss_pred ecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEE
Q 003363 260 EEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 339 (826)
Q Consensus 260 ~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~ 339 (826)
......||++|.++++.+.+ .........++|+|||+. |++... ....|++
T Consensus 158 ---------~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~i~~~~dg~~----l~v~~~--------------~~~~i~~ 208 (333)
T 2dg1_A 158 ---------TNPLGGVYYVSPDFRTVTPI--IQNISVANGIALSTDEKV----LWVTET--------------TANRLHR 208 (333)
T ss_dssp ---------TBCCEEEEEECTTSCCEEEE--EEEESSEEEEEECTTSSE----EEEEEG--------------GGTEEEE
T ss_pred ---------cCCCceEEEEeCCCCEEEEe--ecCCCcccceEECCCCCE----EEEEeC--------------CCCeEEE
Confidence 01236799999888887766 222224567899999997 766541 1236888
Q ss_pred EEcccccchhhhhhhhcCCCCCCccee--------cCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeC
Q 003363 340 VRVSLYKSEASELELKESSSEDLPVVN--------LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 411 (826)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~~~~--------Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~ 411 (826)
+|+.. .+..... +.. ........+++||+. |++... ...|+++|.
T Consensus 209 ~d~~~---------------~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l--~v~~~~---------~~~v~~~d~ 261 (333)
T 2dg1_A 209 IALED---------------DGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNL--YVAMYG---------QGRVLVFNK 261 (333)
T ss_dssp EEECT---------------TSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCE--EEEEET---------TTEEEEECT
T ss_pred EEecC---------------CCcCcccccceEEEecCC-CCCCCceEECCCCCE--EEEEcC---------CCEEEEECC
Confidence 88721 1111111 111 123456788999983 333321 246899986
Q ss_pred CCCCCCCcccceeeeeeeeeccCC--CCCcccccCCCCCCccccCCCEEEEEEEeC---CeEEEEEEECCC
Q 003363 412 PTNGNFSSLEKIVDVIPVVQCAEG--DCFPGLYSSSILSNPWLSDGCTMLLSSIWG---SSQVIISVNVSS 477 (826)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~--~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~---~~~~l~~vdl~t 477 (826)
.+ +.. ..+..+.. +.+ ..+..++|++||+.|++++..+ ....||++++..
T Consensus 262 ~g-~~~----------~~~~~~~~~~g~~-----~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~~ 316 (333)
T 2dg1_A 262 RG-YPI----------GQILIPGRDEGHM-----LRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFA 316 (333)
T ss_dssp TS-CEE----------EEEECTTGGGTCS-----CBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSS
T ss_pred CC-CEE----------EEEEcCCCccccc-----cCcceEEECCCCCEEEEEeCccCCCCCceEEEEeccc
Confidence 43 211 11111110 000 0234678899998898877653 356788888653
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.67 E-value=5.6e-06 Score=88.45 Aligned_cols=90 Identities=14% Similarity=0.032 Sum_probs=55.5
Q ss_pred cCceecCCCCEEEEEeccCCCCCCCCcc-cceEEEEeCCCCCCCC-cccceeeeeeeeeccCCCCCcccccCCCCCCccc
Q 003363 375 FFPRFSPDGKFLVFLSAKSSVDSGAHSA-TDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 452 (826)
Q Consensus 375 ~~p~~SpDG~~l~f~s~~~~~~~g~~~~-~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws 452 (826)
....++||+++|+....... .|.|.. .++|+++|+.+++... +..+. ....+.++
T Consensus 283 q~~a~~~~~~~lyV~~~~~~--~~~hk~~~~~V~viD~~t~kv~~~i~vg~---------------------~~~~lavs 339 (386)
T 3sjl_D 283 QQVAYHRALDRIYLLVDQRD--EWRHKTASRFVVVLDAKTGERLAKFEMGH---------------------EIDSINVS 339 (386)
T ss_dssp SCEEEETTTTEEEEEEEECC--TTCTTSCEEEEEEEETTTCCEEEEEEEEE---------------------EECEEEEC
T ss_pred ceeeECCCCCeEEEEecccc--ccccCCCCCEEEEEECCCCeEEEEEECCC---------------------CcceEEEC
Confidence 34677899998876554321 133333 3689999998866531 11110 12366789
Q ss_pred cCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC
Q 003363 453 SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 488 (826)
Q Consensus 453 ~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~ 488 (826)
+||+.++|.+. .+...+..+|..++++.+-....+
T Consensus 340 ~D~~~~ly~tn-~~~~~VsViD~~t~k~~~~i~~~~ 374 (386)
T 3sjl_D 340 QDEKPLLYALS-TGDKTLYIHDAESGEELRSVNQLG 374 (386)
T ss_dssp SSSSCEEEEEE-TTTTEEEEEETTTCCEEEEECCCC
T ss_pred CCCCeEEEEEc-CCCCeEEEEECCCCcEEEEecCCC
Confidence 99985555544 345567888999988776544433
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.5e-06 Score=91.70 Aligned_cols=85 Identities=18% Similarity=0.155 Sum_probs=51.3
Q ss_pred CceecCCCCEEEEEeccCCCCCCCCc-ccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccC
Q 003363 376 FPRFSPDGKFLVFLSAKSSVDSGAHS-ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 454 (826)
Q Consensus 376 ~p~~SpDG~~l~f~s~~~~~~~g~~~-~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~D 454 (826)
...++|||++|+...... ..|.|. ..++|.++|..+.+...- ++ .+. ....+.|+||
T Consensus 323 ~va~s~dg~rlyVa~~~~--~~gthk~~s~~VsVID~~T~kvv~~-------I~---vg~----------~P~gia~spD 380 (426)
T 3c75_H 323 QTAYHRQSDRIYLLVDQR--DEWKHKAASRFVVVLNAETGERINK-------IE---LGH----------EIDSINVSQD 380 (426)
T ss_dssp CEEEEGGGTEEEEEEEEC--CTTCTTSCEEEEEEEETTTCCEEEE-------EE---EEE----------EECEEEECCS
T ss_pred eeEEcCCCCEEEEEeccc--ccccccCCCCEEEEEECCCCeEEEE-------EE---CCC----------CcCeEEEccC
Confidence 358999999876554321 012221 236899999988664211 11 100 1236789999
Q ss_pred CCEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003363 455 GCTMLLSSIWGSSQVIISVNVSSGELLRI 483 (826)
Q Consensus 455 g~~l~~~~~~~~~~~l~~vdl~tg~~~~l 483 (826)
|+.++|.+.+ ....|..+|+.++++..-
T Consensus 381 g~~~lyv~n~-~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 381 AEPLLYALSA-GTQTLHIYDAATGEELRS 408 (426)
T ss_dssp SSCEEEEEET-TTTEEEEEETTTCCEEEE
T ss_pred CCEEEEEEcC-CCCeEEEEECCCCCEEEE
Confidence 9944444443 345788899999987744
|
| >1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19 | Back alignment and structure |
|---|
Probab=98.63 E-value=3.1e-08 Score=108.67 Aligned_cols=112 Identities=12% Similarity=0.033 Sum_probs=77.1
Q ss_pred CCCcEEEEEcCCCCCCCCccchH-HHHHH-HHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSK-SLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~-~~~~l-a~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (826)
...|+||++||..... ...|.. .+..| +..+|.|+++|++|.+..... ... .......+++.+.++++.++..
T Consensus 67 ~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g~g~s~y~--~~~--~~~~~v~~~la~ll~~L~~~~g 141 (449)
T 1hpl_A 67 TGRKTRFIIHGFIDKG-EESWLSTMCQNMFKVESVNCICVDWKSGSRTAYS--QAS--QNVRIVGAEVAYLVGVLQSSFD 141 (449)
T ss_dssp TTSEEEEEECCCCCTT-CTTHHHHHHHHHHHHCCEEEEEEECHHHHSSCHH--HHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEecCCCCC-CccHHHHHHHHHHhcCCeEEEEEeCCcccCCccH--HHH--HHHHHHHHHHHHHHHHHHHhcC
Confidence 4568999999966442 234554 44444 567999999999984322100 000 0000113566777777765433
Q ss_pred CCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCcc
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 706 (826)
++.+++.|+|||+||.+|..++.++|++++++++..|..
T Consensus 142 ~~~~~v~LIGhSlGg~vA~~~a~~~p~~v~~iv~Ldpa~ 180 (449)
T 1hpl_A 142 YSPSNVHIIGHSLGSHAAGEAGRRTNGAVGRITGLDPAE 180 (449)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCcccEEEEEECHhHHHHHHHHHhcchhcceeeccCccc
Confidence 567899999999999999999999999999999887754
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.7e-06 Score=90.28 Aligned_cols=187 Identities=15% Similarity=0.022 Sum_probs=104.0
Q ss_pred ceEEEEEccCCceEe-ccCCCCC----CccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccc
Q 003363 273 PSLFVININSGEVQA-VKGIPKS----LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~-l~~~~~~----~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (826)
..|+++|++++++.. +. .... .....+++ +++. |+...+. ....|+++|+
T Consensus 105 ~~v~~iD~~t~~~~~~i~-~g~~~~~~~~p~~i~~--~~~~----lyv~~~~-------------~~~~v~viD~----- 159 (328)
T 3dsm_A 105 YRIFIINPKTYEITGYIE-CPDMDMESGSTEQMVQ--YGKY----VYVNCWS-------------YQNRILKIDT----- 159 (328)
T ss_dssp SEEEEEETTTTEEEEEEE-CTTCCTTTCBCCCEEE--ETTE----EEEEECT-------------TCCEEEEEET-----
T ss_pred CeEEEEECCCCeEEEEEE-cCCccccCCCcceEEE--ECCE----EEEEcCC-------------CCCEEEEEEC-----
Confidence 579999999988763 32 1110 13446666 5554 6554321 1237999998
Q ss_pred hhhhhhhhcCCCCCCcce-ecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeee
Q 003363 348 EASELELKESSSEDLPVV-NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 426 (826)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~-~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 426 (826)
++++.. .+.. ........++|||+ |++..........+......|+++|..+++..
T Consensus 160 ------------~t~~~~~~i~~-g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~--------- 216 (328)
T 3dsm_A 160 ------------ETDKVVDELTI-GIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVE--------- 216 (328)
T ss_dssp ------------TTTEEEEEEEC-SSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE---------
T ss_pred ------------CCCeEEEEEEc-CCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEE---------
Confidence 555543 3332 23456788999998 54454332100000011367999998775431
Q ss_pred eeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe--cCC-CCCeeeEEEeecCCEEE
Q 003363 427 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI--TPA-ESNFSWSLLTLDGDNII 503 (826)
Q Consensus 427 ~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~l--t~~-~~~~~~~~~s~dg~~l~ 503 (826)
..+..+.. .....++|+|||+.||++. . .++.+|++++++... ... ........++++++.++
T Consensus 217 -~~~~~~~g--------~~p~~la~~~d~~~lyv~~---~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~ly 282 (328)
T 3dsm_A 217 -KQFKFKLG--------DWPSEVQLNGTRDTLYWIN---N--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVY 282 (328)
T ss_dssp -EEEECCTT--------CCCEEEEECTTSCEEEEES---S--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEE
T ss_pred -EEEecCCC--------CCceeEEEecCCCEEEEEc---c--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEE
Confidence 11111100 1234678999999888753 2 789999998886421 111 12233346777677666
Q ss_pred EEE-eCCCCCCeEEEEeec
Q 003363 504 AVS-SSPVDVPQVKYGYFV 521 (826)
Q Consensus 504 ~~~-s~~~~p~~l~~~~~~ 521 (826)
+.. .+......|++++..
T Consensus 283 va~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 283 VADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEECTTSSSEEEEEEECTT
T ss_pred EEcccccccCCEEEEECCC
Confidence 664 222344567777754
|
| >1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A | Back alignment and structure |
|---|
Probab=98.60 E-value=3.6e-08 Score=108.17 Aligned_cols=111 Identities=12% Similarity=0.069 Sum_probs=75.0
Q ss_pred CCCcEEEEEcCCCCCCCCccchH-HHHHHHH-CCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSK-SLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~-~~~~la~-~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (826)
...|+||++||..... ...|.. ....|.+ .+|.|+++|++|.+... ..... .......+++.+.++++.++..
T Consensus 68 ~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g~g~s~--y~~~~--~~~~~~a~~l~~ll~~L~~~~g 142 (450)
T 1rp1_A 68 TDKKTRFIIHGFIDKG-EENWLLDMCKNMFKVEEVNCICVDWKKGSQTS--YTQAA--NNVRVVGAQVAQMLSMLSANYS 142 (450)
T ss_dssp TTSEEEEEECCCCCTT-CTTHHHHHHHHHTTTCCEEEEEEECHHHHSSC--HHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEccCCCCC-CcchHHHHHHHHHhcCCeEEEEEeCccccCCc--chHHH--HHHHHHHHHHHHHHHHHHHhcC
Confidence 4579999999966442 224544 3445544 58999999999833211 00000 0001124566777777764433
Q ss_pred CCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCcc
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 706 (826)
++.+++.|+|||+||.+|..++.++|+ +.++++..|..
T Consensus 143 ~~~~~v~LVGhSlGg~vA~~~a~~~p~-v~~iv~Ldpa~ 180 (450)
T 1rp1_A 143 YSPSQVQLIGHSLGAHVAGEAGSRTPG-LGRITGLDPVE 180 (450)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHTSTT-CCEEEEESCCC
T ss_pred CChhhEEEEEECHhHHHHHHHHHhcCC-cccccccCccc
Confidence 567899999999999999999999999 99999887754
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.5e-06 Score=97.15 Aligned_cols=240 Identities=9% Similarity=-0.027 Sum_probs=138.9
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCc
Q 003363 158 AVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 236 (826)
Q Consensus 158 ~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~ 236 (826)
.+.|+.|...++|+.+.+ ...+.+++ ..++....+.+.... .++.+||||++|+... .
T Consensus 158 ~~~~~~d~~~~~~V~~~~--~~~V~viD~~t~~v~~~i~~g~~p----------~~v~~SpDGr~lyv~~-~-------- 216 (567)
T 1qks_A 158 QQMNDWDLENLFSVTLRD--AGQIALIDGSTYEIKTVLDTGYAV----------HISRLSASGRYLFVIG-R-------- 216 (567)
T ss_dssp SCCSCCCGGGEEEEEETT--TTEEEEEETTTCCEEEEEECSSCE----------EEEEECTTSCEEEEEE-T--------
T ss_pred ccccccCCCceEEEEeCC--CCeEEEEECCCCeEEEEEeCCCCc----------cceEECCCCCEEEEEc-C--------
Confidence 456788877777887754 33677777 455555555554444 5789999999876542 1
Q ss_pred cCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEcc--CCceEeccCCCCCCccceEEEe----eCCCCCc
Q 003363 237 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ--SGEVQAVKGIPKSLSVGQVVWA----PLNEGLH 310 (826)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~--~g~~~~l~~~~~~~~~~~~~wS----PDg~~~~ 310 (826)
...|.++|+. ++++..- ++.......++|| |||++
T Consensus 217 -----------------------------------dg~V~viD~~~~t~~~v~~--i~~G~~P~~ia~s~~~~pDGk~-- 257 (567)
T 1qks_A 217 -----------------------------------DGKVNMIDLWMKEPTTVAE--IKIGSEARSIETSKMEGWEDKY-- 257 (567)
T ss_dssp -----------------------------------TSEEEEEETTSSSCCEEEE--EECCSEEEEEEECCSTTCTTTE--
T ss_pred -----------------------------------CCeEEEEECCCCCCcEeEE--EecCCCCceeEEccccCCCCCE--
Confidence 2469999995 5554322 2333456789999 79996
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCccee-cCCC-----------CccccCce
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN-LTES-----------ISSAFFPR 378 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-Lt~~-----------~~~~~~p~ 378 (826)
++... . .+..+.++|. .+.+... +.-. ........
T Consensus 258 --l~v~n-~-------------~~~~v~ViD~-----------------~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~ 304 (567)
T 1qks_A 258 --AIAGA-Y-------------WPPQYVIMDG-----------------ETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL 304 (567)
T ss_dssp --EEEEE-E-------------ETTEEEEEET-----------------TTCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred --EEEEE-c-------------cCCeEEEEEC-----------------CCCcEEEEEeccccccccccccCCCceEEEE
Confidence 65544 2 1236778886 4444322 2111 00233456
Q ss_pred ecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEE
Q 003363 379 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 458 (826)
Q Consensus 379 ~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l 458 (826)
.|+++..+++.... ..+|+++|........ +..+ . .+.+ +....|+|||+++
T Consensus 305 ~s~~~~~~vv~~~~----------~g~v~~vd~~~~~~~~-------v~~i-~---~~~~-------~~d~~~~pdgr~~ 356 (567)
T 1qks_A 305 ASHYRPEFIVNVKE----------TGKILLVDYTDLNNLK-------TTEI-S---AERF-------LHDGGLDGSHRYF 356 (567)
T ss_dssp ECSSSSEEEEEETT----------TTEEEEEETTCSSEEE-------EEEE-E---CCSS-------EEEEEECTTSCEE
T ss_pred EcCCCCEEEEEecC----------CCeEEEEecCCCccce-------eeee-e---cccc-------ccCceECCCCCEE
Confidence 78888876655422 3679999976533111 1111 0 0111 1245699999988
Q ss_pred EEEEEeCCeEEEEEEECCCCcEEEecCC-CC-C--eeeE-EEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003363 459 LLSSIWGSSQVIISVNVSSGELLRITPA-ES-N--FSWS-LLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (826)
Q Consensus 459 ~~~~~~~~~~~l~~vdl~tg~~~~lt~~-~~-~--~~~~-~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 522 (826)
+++... ...|..+|++++++.....- .. . .... .+.++++.++++..-. ...|.+++..+
T Consensus 357 ~va~~~--sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g--~~~Vsvid~~~ 421 (567)
T 1qks_A 357 ITAANA--RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMG--DDSVALIGTDP 421 (567)
T ss_dssp EEEEGG--GTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSS--SSEEEEEECCT
T ss_pred EEEeCC--CCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCC--CCeEEEecCCC
Confidence 776533 34577799999987654432 11 0 0122 2466667665544322 23477777654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=3.5e-06 Score=90.13 Aligned_cols=261 Identities=13% Similarity=0.032 Sum_probs=135.8
Q ss_pred EEEeCCCCCeEEEEecC------CCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCC
Q 003363 158 AVVPSPSGSKLLVVRNP------ENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (826)
Q Consensus 158 ~~~~SPdG~~la~~~~~------~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~ 230 (826)
.+.+||||+++++.... +.....+..++ ..++..+.+.+..... .+ ....-.++.+||||++|+.....+
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~-~~-~g~~P~~ia~SpDGk~lyVan~~~- 145 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR-FS-VGPRVHIIGNCASSACLLFFLFGS- 145 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS-CC-BSCCTTSEEECTTSSCEEEEECSS-
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc-cc-cCCCcceEEEcCCCCEEEEEccCC-
Confidence 78999999999776421 11123456666 4556666665541100 00 000015899999999877653321
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEE--EEccCCceEeccCCCCCCccceEEEeeCCCC
Q 003363 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFV--ININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308 (826)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v--~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~ 308 (826)
...+.+ +|+.+ +..+. .++. +...|+|+.
T Consensus 146 -----------------------------------------~~~v~V~~iD~~t--v~~i~-v~~~-----~~~~p~g~~ 176 (368)
T 1mda_H 146 -----------------------------------------SAAAGLSVPGASD--DQLTK-SASC-----FHIHPGAAA 176 (368)
T ss_dssp -----------------------------------------SCEEEEEETTTEE--EEEEE-CSSC-----CCCEEEETT
T ss_pred -----------------------------------------CCeEEEEEEchhh--ceEEE-CCCc-----eEEccCCCe
Confidence 245666 78776 45442 2221 234688887
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCccee-cCCCCccccCceecCCCCEEE
Q 003363 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN-LTESISSAFFPRFSPDGKFLV 387 (826)
Q Consensus 309 ~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-Lt~~~~~~~~p~~SpDG~~l~ 387 (826)
.++... .+..+..+|+.... ...++... .+....-...|..++|++.++
T Consensus 177 ----~~~~~~--------------~dg~~~~vd~~~~~------------~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~ 226 (368)
T 1mda_H 177 ----THYLGS--------------CPASLAASDLAAAP------------AAAGIVGAQCTGAQNCSSQAAQANYPGMLV 226 (368)
T ss_dssp ----EEECCC--------------CTTSCEEEECCSSC------------CCCEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred ----EEEEEc--------------CCCCEEEEECcccc------------ccCCeEEEEeeeeeeCCCCccccccCCEEE
Confidence 655431 12245667762000 00122211 000000112333488999998
Q ss_pred EEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCC-CCCcccccCCCCCCccccCCCEEEEEEEeC-
Q 003363 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEG-DCFPGLYSSSILSNPWLSDGCTMLLSSIWG- 465 (826)
Q Consensus 388 f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~- 465 (826)
|.+. . .++.+|+.++... ++..+..... ....+....+...+.+++||+++|++....
T Consensus 227 ~vs~-~-----------~V~viD~~~~~~~--------v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~ 286 (368)
T 1mda_H 227 WAVA-S-----------SILQGDIPAAGAT--------MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS 286 (368)
T ss_dssp ECBS-S-----------CCEEEECCSSCCE--------EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECS
T ss_pred EEcC-C-----------EEEEEECCCCcce--------EEEEEEeccccccccccccCcceeeEEcCCCCEEEEEecccc
Confidence 8885 3 3888998654321 1111110000 000000001222357999999998876523
Q ss_pred C-----eEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEe-CCCCCCeEEEEeeccc
Q 003363 466 S-----SQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS-SPVDVPQVKYGYFVDK 523 (826)
Q Consensus 466 ~-----~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s-~~~~p~~l~~~~~~~~ 523 (826)
+ ...+..+|++++++..-.+.........+++||+.+++... .. ..|.++|+.+.
T Consensus 287 ~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~---~~VsVID~~t~ 347 (368)
T 1mda_H 287 RSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGT---EVLDIYDAASD 347 (368)
T ss_dssp SCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTT---TEEEEEESSSC
T ss_pred CcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCC---CeEEEEECCCC
Confidence 3 33455999999876543222222334578999998877766 33 44888887644
|
| >3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis, hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A {Homo sapiens} PDB: 1xkt_A | Back alignment and structure |
|---|
Probab=98.59 E-value=7.6e-08 Score=99.97 Aligned_cols=96 Identities=11% Similarity=0.022 Sum_probs=66.9
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (826)
+..|.||++||.+++ ...|...+..|. +.|+++|+++.. ....++++.+.+..+++.- ..
T Consensus 22 ~~~~~l~~~hg~~~~--~~~~~~~~~~L~---~~v~~~d~~~~~--------------~~~~~~~~a~~~~~~i~~~-~~ 81 (283)
T 3tjm_A 22 SSERPLFLVHPIEGS--TTVFHSLASRLS---IPTYGLQCTRAA--------------PLDSIHSLAAYYIDCIRQV-QP 81 (283)
T ss_dssp SSSCCEEEECCTTCC--SGGGHHHHHHCS---SCEEEECCCTTS--------------CCSCHHHHHHHHHHHHTTT-CC
T ss_pred CCCCeEEEECCCCCC--HHHHHHHHHhcC---ceEEEEecCCCC--------------CCCCHHHHHHHHHHHHHHh-CC
Confidence 345678999997765 557777777775 999999996521 1123555554444444332 12
Q ss_pred CCcEEEEEecchHHHHHHHHHhC---CCcee---EEEecCCc
Q 003363 670 PSKVTVVGGSHGGFLTTHLIGQA---PDKFV---AAAARNPL 705 (826)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~a~~~---p~~~~---a~v~~~p~ 705 (826)
.+++.|+||||||.+++.++.+. |+.+. +++++++.
T Consensus 82 ~~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~~~~lvlid~~ 123 (283)
T 3tjm_A 82 EGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDGS 123 (283)
T ss_dssp SSCCEEEEETHHHHHHHHHHHHHHHHHTTSCCCCEEEEESCC
T ss_pred CCCEEEEEECHhHHHHHHHHHHHHHcCCCCCccceEEEEcCC
Confidence 36899999999999999998865 77887 88887764
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.2e-06 Score=89.88 Aligned_cols=251 Identities=6% Similarity=-0.092 Sum_probs=132.3
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCe
Q 003363 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 180 (826)
Q Consensus 101 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 180 (826)
-|.++|||+.+.|+... ...++.++. . ++...+.... ......+++|||+.++ ... +...
T Consensus 49 gp~~~~~g~~l~~~d~~--------~~~i~~~~~--~-g~~~~~~~~~-----~~~~gl~~d~dG~l~v-~~~---~~~~ 108 (305)
T 3dr2_A 49 GPAWWEAQRTLVWSDLV--------GRRVLGWRE--D-GTVDVLLDAT-----AFTNGNAVDAQQRLVH-CEH---GRRA 108 (305)
T ss_dssp EEEEEGGGTEEEEEETT--------TTEEEEEET--T-SCEEEEEESC-----SCEEEEEECTTSCEEE-EET---TTTE
T ss_pred CCeEeCCCCEEEEEECC--------CCEEEEEeC--C-CCEEEEeCCC-----CccceeeECCCCCEEE-EEC---CCCE
Confidence 45678999988776322 224555543 2 2333333322 3467789999998443 322 1224
Q ss_pred EEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeec-CCCCCCCccCCCCCCCCCCccCCCCCCccee
Q 003363 181 QFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE-PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (826)
Q Consensus 181 ~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (826)
++.+..+++.+.+.....+.. ......+.++|||+ |+++... .... . +
T Consensus 109 v~~~~~~g~~~~~~~~~~~~~-----~~~~~~i~~d~dG~-l~~td~~~g~~~--~-----------------------~ 157 (305)
T 3dr2_A 109 ITRSDADGQAHLLVGRYAGKR-----LNSPNDLIVARDGA-IWFTDPPFGLRK--P-----------------------S 157 (305)
T ss_dssp EEEECTTSCEEEEECEETTEE-----CSCCCCEEECTTSC-EEEECCSGGGSC--G-----------------------G
T ss_pred EEEECCCCCEEEEEeccCCCc-----cCCCCCEEECCCCC-EEEeCcCCCccc--c-----------------------c
Confidence 666654455554443211110 00125789999997 5553100 0000 0 0
Q ss_pred ecCCCcc-CCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceE
Q 003363 260 EEDWGET-YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (826)
Q Consensus 260 ~~d~g~~-~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~ 338 (826)
. +.. ........||++|.++|+++.+ . .......++|+|||+. |++....... .....|+
T Consensus 158 ~---~~~~~~~~~~~~v~~~d~~~g~~~~~--~-~~~~p~gl~~spdg~~----lyv~~~~~~~---------~~~~~i~ 218 (305)
T 3dr2_A 158 Q---GCPADPELAHHSVYRLPPDGSPLQRM--A-DLDHPNGLAFSPDEQT----LYVSQTPEQG---------HGSVEIT 218 (305)
T ss_dssp G---SCCCCCSSSCEEEEEECSSSCCCEEE--E-EESSEEEEEECTTSSE----EEEEECCC------------CCCEEE
T ss_pred c---ccccccccCCCeEEEEcCCCCcEEEE--e-cCCCCcceEEcCCCCE----EEEEecCCcC---------CCCCEEE
Confidence 0 000 0001236799999988988877 3 3234567899999997 7665421100 0124788
Q ss_pred EEEcccccchhhhhhhhcCCCCCC--cceec-CCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 339 AVRVSLYKSEASELELKESSSEDL--PVVNL-TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~--~~~~L-t~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
++++.. .+ ..+.+ ....+......+++||+ +|++.. ..|+++|.++ +
T Consensus 219 ~~~~~~----------------~~l~~~~~~~~~~~~~pdgi~~d~~G~--lwv~~~-----------~gv~~~~~~g-~ 268 (305)
T 3dr2_A 219 AFAWRD----------------GALHDRRHFASVPDGLPDGFCVDRGGW--LWSSSG-----------TGVCVFDSDG-Q 268 (305)
T ss_dssp EEEEET----------------TEEEEEEEEECCSSSCCCSEEECTTSC--EEECCS-----------SEEEEECTTS-C
T ss_pred EEEecC----------------CCccCCeEEEECCCCCCCeEEECCCCC--EEEecC-----------CcEEEECCCC-C
Confidence 888731 11 01111 11233455678899998 445532 2388998643 2
Q ss_pred CCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003363 416 NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (826)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl 475 (826)
.. ..+..+. .+..++|++|++.|++++. ..||++++
T Consensus 269 ~~----------~~~~~~~----------~~~~~~f~~d~~~L~it~~----~~l~~~~~ 304 (305)
T 3dr2_A 269 LL----------GHIPTPG----------TASNCTFDQAQQRLFITGG----PCLWMLPL 304 (305)
T ss_dssp EE----------EEEECSS----------CCCEEEECTTSCEEEEEET----TEEEEEEC
T ss_pred EE----------EEEECCC----------ceeEEEEeCCCCEEEEEcC----CeEEEEEC
Confidence 11 1111110 2346788899998888753 25777765
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.5e-05 Score=81.57 Aligned_cols=203 Identities=11% Similarity=0.122 Sum_probs=121.6
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecC-CCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
....++|+|++++|+++... ...++.+. +++....+.... ... .+++++|++..|++...
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~---~~~I~~~~~~g~~~~~~~~~~~~~p----------~~ia~d~~~~~lyv~d~----- 98 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDIS---EPSIGRASLHGGEPTTIIRQDLGSP----------EGIALDHLGRTIFWTDS----- 98 (267)
T ss_dssp EEEEEEEETTTTEEEEEETT---TTEEEEEESSSCCCEEEECTTCCCE----------EEEEEETTTTEEEEEET-----
T ss_pred cEEEEEEecCCCEEEEEECC---CCEEEEEecCCCCcEEEEECCCCCc----------cEEEEEecCCeEEEEEC-----
Confidence 45688999999998776542 33577777 333333333211 122 58899999888876532
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCC-CccceEEEeeCCCCCcc
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg~~~~~ 311 (826)
....|+++++++...+.+ .... .....++++|++..
T Consensus 99 --------------------------------------~~~~I~~~~~~g~~~~~~--~~~~~~~P~~i~vd~~~g~--- 135 (267)
T 1npe_A 99 --------------------------------------QLDRIEVAKMDGTQRRVL--FDTGLVNPRGIVTDPVRGN--- 135 (267)
T ss_dssp --------------------------------------TTTEEEEEETTSCSCEEE--ECSSCSSEEEEEEETTTTE---
T ss_pred --------------------------------------CCCEEEEEEcCCCCEEEE--EECCCCCccEEEEeeCCCE---
Confidence 225789999887655544 2222 35678899998886
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecC-CCCccccCceecCCCCEEEEEe
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLS 390 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~l~f~s 390 (826)
|+++.... ....|+++++ ++...+.+. .........+++|||++|++..
T Consensus 136 -lyv~~~~~------------~~~~I~~~~~-----------------dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d 185 (267)
T 1npe_A 136 -LYWTDWNR------------DNPKIETSHM-----------------DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVD 185 (267)
T ss_dssp -EEEEECCS------------SSCEEEEEET-----------------TSCCCEEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred -EEEEECCC------------CCcEEEEEec-----------------CCCCcEEEEECCCCCCcEEEEcCCCCEEEEEE
Confidence 77664211 1237888887 433333332 2233456788999999887776
Q ss_pred ccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEE
Q 003363 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470 (826)
Q Consensus 391 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l 470 (826)
.. ...|+++|+++..... +.. ....| . ....|+..||++. .+...|
T Consensus 186 ~~----------~~~I~~~~~~g~~~~~-------~~~------~~~~P-------~--gi~~d~~~lyva~--~~~~~v 231 (267)
T 1npe_A 186 AG----------THRAECLNPAQPGRRK-------VLE------GLQYP-------F--AVTSYGKNLYYTD--WKTNSV 231 (267)
T ss_dssp TT----------TTEEEEEETTEEEEEE-------EEE------CCCSE-------E--EEEEETTEEEEEE--TTTTEE
T ss_pred CC----------CCEEEEEecCCCceEE-------Eec------CCCCc-------e--EEEEeCCEEEEEE--CCCCeE
Confidence 44 2579999987532111 111 00011 1 2234667787753 233468
Q ss_pred EEEECCCCcEEE
Q 003363 471 ISVNVSSGELLR 482 (826)
Q Consensus 471 ~~vdl~tg~~~~ 482 (826)
+++|.++|+...
T Consensus 232 ~~~d~~~g~~~~ 243 (267)
T 1npe_A 232 IAMDLAISKEMD 243 (267)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEeCCCCCceE
Confidence 899998877543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=7e-06 Score=84.11 Aligned_cols=178 Identities=8% Similarity=-0.022 Sum_probs=106.8
Q ss_pred ceEEEEEccCCceEeccCCCCC-CccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (826)
..|++++++++..+.+ .... .....++++|+++. |+++.. ....|+++++
T Consensus 58 ~~I~~~~~~g~~~~~~--~~~~~~~p~~ia~d~~~~~----lyv~d~--------------~~~~I~~~~~--------- 108 (267)
T 1npe_A 58 PSIGRASLHGGEPTTI--IRQDLGSPEGIALDHLGRT----IFWTDS--------------QLDRIEVAKM--------- 108 (267)
T ss_dssp TEEEEEESSSCCCEEE--ECTTCCCEEEEEEETTTTE----EEEEET--------------TTTEEEEEET---------
T ss_pred CEEEEEecCCCCcEEE--EECCCCCccEEEEEecCCe----EEEEEC--------------CCCEEEEEEc---------
Confidence 6799999988776555 2222 35678899999886 766542 2236888887
Q ss_pred hhhhcCCCCCCcceecCC-CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeee
Q 003363 352 LELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (826)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 430 (826)
++...+.+.. ........+++|++.+|++..... ....|+++++++.....+. .
T Consensus 109 --------~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~--------~~~~I~~~~~dg~~~~~~~-------~-- 163 (267)
T 1npe_A 109 --------DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR--------DNPKIETSHMDGTNRRILA-------Q-- 163 (267)
T ss_dssp --------TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS--------SSCEEEEEETTSCCCEEEE-------C--
T ss_pred --------CCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC--------CCcEEEEEecCCCCcEEEE-------E--
Confidence 4433333322 223456678999988887766431 1357889987653321110 0
Q ss_pred eccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCC
Q 003363 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPV 510 (826)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~ 510 (826)
. . + .....+++++|++.||++. .+...|+++|++++..+.+...... -..++.+++.+++.....
T Consensus 164 -~--~--~-----~~P~gia~d~~~~~lyv~d--~~~~~I~~~~~~g~~~~~~~~~~~~--P~gi~~d~~~lyva~~~~- 228 (267)
T 1npe_A 164 -D--N--L-----GLPNGLTFDAFSSQLCWVD--AGTHRAECLNPAQPGRRKVLEGLQY--PFAVTSYGKNLYYTDWKT- 228 (267)
T ss_dssp -T--T--C-----SCEEEEEEETTTTEEEEEE--TTTTEEEEEETTEEEEEEEEECCCS--EEEEEEETTEEEEEETTT-
T ss_pred -C--C--C-----CCCcEEEEcCCCCEEEEEE--CCCCEEEEEecCCCceEEEecCCCC--ceEEEEeCCEEEEEECCC-
Confidence 0 0 0 0123678999998888764 3345788999987665555432221 124566777777654332
Q ss_pred CCCeEEEEeec
Q 003363 511 DVPQVKYGYFV 521 (826)
Q Consensus 511 ~p~~l~~~~~~ 521 (826)
..|++++..
T Consensus 229 --~~v~~~d~~ 237 (267)
T 1npe_A 229 --NSVIAMDLA 237 (267)
T ss_dssp --TEEEEEETT
T ss_pred --CeEEEEeCC
Confidence 347776654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-05 Score=88.26 Aligned_cols=218 Identities=11% Similarity=0.022 Sum_probs=122.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
......+|+|+|+ |+++ +. ....+..++ .++....+....... . +.|+|||+.|+......
T Consensus 131 ~~P~~la~d~~g~-lyv~-d~--~~~~I~~id~~~g~~~~~~~~~~~~----------~-ia~~~~g~~l~~~d~~~--- 192 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAY-QR--DDPRVRLISVDDNKVTTVHPGFKGG----------K-PAVTKDKQRVYSIGWEG--- 192 (409)
T ss_dssp CCEEEEEECSTTE-EEEE-ET--TTTEEEEEETTTTEEEEEEETCCBC----------B-CEECTTSSEEEEEBSST---
T ss_pred CCceEEEEeCCCC-EEEE-ec--CCCcEEEEECCCCEEEEeeccCCCC----------c-eeEecCCCcEEEEecCC---
Confidence 4577889999998 5444 33 223566666 445555444332222 3 89999999776653221
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCce-Eecc-CCC-CCCccceEEEeeCCCCC
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVK-GIP-KSLSVGQVVWAPLNEGL 309 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~-~~l~-~~~-~~~~~~~~~wSPDg~~~ 309 (826)
...|++++..++.. +.+. -.. ....+..++++|++..
T Consensus 193 ---------------------------------------~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~- 232 (409)
T 3hrp_A 193 ---------------------------------------THTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW- 232 (409)
T ss_dssp ---------------------------------------TCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE-
T ss_pred ---------------------------------------CceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe-
Confidence 13799999887654 2220 012 2335667899996665
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceec----CCC-Cccc-c-CceecCC
Q 003363 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL----TES-ISSA-F-FPRFSPD 382 (826)
Q Consensus 310 ~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L----t~~-~~~~-~-~p~~SpD 382 (826)
|++.. ....|+++|. +++....+ ... .+.. . ..+|+|+
T Consensus 233 ---lyv~d---------------~~~~I~~~d~-----------------~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~ 277 (409)
T 3hrp_A 233 ---LYFVD---------------SNKNFGRFNV-----------------KTQEVTLIKQLELSGSLGTNPGPYLIYYFV 277 (409)
T ss_dssp ---EEEEC---------------TTCEEEEEET-----------------TTCCEEEEEECCCCSCCCCSSCCEEEEETT
T ss_pred ---EEEEE---------------CCCcEEEEEC-----------------CCCCEEEEecccccCCCCCCccccEEEeCC
Confidence 77732 1236999997 45544333 221 2222 3 7889998
Q ss_pred CCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccce--eeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEE
Q 003363 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI--VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 460 (826)
Q Consensus 383 G~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~ 460 (826)
+..|++.... ...|++++.++. ...+.... .....- ......| .....+++++||+ ||+
T Consensus 278 ~g~lyv~d~~----------~~~I~~~~~~g~-~~~~~g~~~~~g~~dg--~~~~~~~-----~~P~gia~d~dG~-lyv 338 (409)
T 3hrp_A 278 DSNFYMSDQN----------LSSVYKITPDGE-CEWFCGSATQKTVQDG--LREEALF-----AQPNGMTVDEDGN-FYI 338 (409)
T ss_dssp TTEEEEEETT----------TTEEEEECTTCC-EEEEEECTTCCSCBCE--EGGGCBC-----SSEEEEEECTTCC-EEE
T ss_pred CCEEEEEeCC----------CCEEEEEecCCC-EEEEEeCCCCCCcCCC--cccccEe-----CCCeEEEEeCCCC-EEE
Confidence 7777665533 257999987653 11100000 000000 0000001 1234678999998 666
Q ss_pred EEEeC-CeEEEEEEECCCCcEEEecC
Q 003363 461 SSIWG-SSQVIISVNVSSGELLRITP 485 (826)
Q Consensus 461 ~~~~~-~~~~l~~vdl~tg~~~~lt~ 485 (826)
+ + . +...|+++++.+|++..+..
T Consensus 339 a-d-~~~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 339 V-D-GFKGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp E-E-TTTTCEEEEEETTTTEEEEEEE
T ss_pred E-e-CCCCCEEEEEECCCCEEEEEeC
Confidence 5 2 3 56678999987888877654
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.53 E-value=2e-06 Score=89.73 Aligned_cols=238 Identities=11% Similarity=0.025 Sum_probs=127.4
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003363 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (826)
Q Consensus 102 ~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (826)
|.++|++..+.++... ...|+.++. .++....+... ..+...+++|||+ |++... ..+
T Consensus 18 p~w~~~~~~l~~~d~~--------~~~i~~~d~--~~~~~~~~~~~------~~~~~i~~~~dG~-l~v~~~-----~~l 75 (297)
T 3g4e_A 18 PVWEEVSNSLLFVDIP--------AKKVCRWDS--FTKQVQRVTMD------APVSSVALRQSGG-YVATIG-----TKF 75 (297)
T ss_dssp EEEETTTTEEEEEETT--------TTEEEEEET--TTCCEEEEECS------SCEEEEEEBTTSS-EEEEET-----TEE
T ss_pred CeEECCCCEEEEEECC--------CCEEEEEEC--CCCcEEEEeCC------CceEEEEECCCCC-EEEEEC-----CeE
Confidence 4457877777665322 235666554 22222222211 3477889999999 433322 257
Q ss_pred EEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceee
Q 003363 182 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (826)
Q Consensus 182 ~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (826)
+.++ .+++.+.+........ ......+.++|||+ |++.........
T Consensus 76 ~~~d~~~g~~~~~~~~~~~~~-----~~~~~di~~d~dG~-l~~~~~~~~~~~--------------------------- 122 (297)
T 3g4e_A 76 CALNWKEQSAVVLATVDNDKK-----NNRFNDGKVDPAGR-YFAGTMAEETAP--------------------------- 122 (297)
T ss_dssp EEEETTTTEEEEEEECCTTCS-----SEEEEEEEECTTSC-EEEEEEECCSBT---------------------------
T ss_pred EEEECCCCcEEEEEecCCCCC-----CCCCCCEEECCCCC-EEEecCCccccc---------------------------
Confidence 7776 4555555554322110 01126789999998 555433211000
Q ss_pred cCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEE
Q 003363 261 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 340 (826)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~ 340 (826)
.........||.++.+ ++...+ ...-.....++|+|||+. |++... ....|+++
T Consensus 123 -----~~~~~~~~~l~~~d~~-g~~~~~--~~~~~~pngi~~spdg~~----lyv~~~--------------~~~~i~~~ 176 (297)
T 3g4e_A 123 -----AVLERHQGALYSLFPD-HHVKKY--FDQVDISNGLDWSLDHKI----FYYIDS--------------LSYSVDAF 176 (297)
T ss_dssp -----TBCCTTCEEEEEECTT-SCEEEE--EEEESBEEEEEECTTSCE----EEEEEG--------------GGTEEEEE
T ss_pred -----ccccCCCcEEEEEECC-CCEEEE--eeccccccceEEcCCCCE----EEEecC--------------CCCcEEEE
Confidence 0000133678988875 455444 222224567899999997 766542 12368888
Q ss_pred EcccccchhhhhhhhcCCCCCCcc---e---ecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCC
Q 003363 341 RVSLYKSEASELELKESSSEDLPV---V---NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (826)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~~---~---~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~ 414 (826)
+++. .++.. + .+....+......+++||+ | |++... ...|+++|.+++
T Consensus 177 ~~d~---------------~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-l-wva~~~---------~~~v~~~d~~tG 230 (297)
T 3g4e_A 177 DYDL---------------QTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-L-WVACYN---------GGRVIRLDPVTG 230 (297)
T ss_dssp EECT---------------TTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-E-EEEEET---------TTEEEEECTTTC
T ss_pred eccC---------------CCCcccCcEEEEECCCCCCCCCeeEECCCCC-E-EEEEcC---------CCEEEEEcCCCc
Confidence 7621 23322 1 1222223455678899996 3 344321 246999998765
Q ss_pred CCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccc-cCCCEEEEEEEeC
Q 003363 415 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL-SDGCTMLLSSIWG 465 (826)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws-~Dg~~l~~~~~~~ 465 (826)
+... .+..+. ..+..++|+ ||+++||+++...
T Consensus 231 ~~~~----------~i~~p~---------~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 231 KRLQ----------TVKLPV---------DKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp CEEE----------EEECSS---------SBEEEEEEESGGGCEEEEEEBCT
T ss_pred eEEE----------EEECCC---------CCceEEEEeCCCCCEEEEEcCCc
Confidence 5321 111110 023366787 8999999887654
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=5e-06 Score=88.08 Aligned_cols=233 Identities=10% Similarity=0.059 Sum_probs=126.9
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCe
Q 003363 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 180 (826)
Q Consensus 101 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 180 (826)
-|.++||++.+.++... ...|+.++. .+++.+.++. + ..+...+|+|||+.++.. .. .
T Consensus 53 gp~~~~~~~~l~~~d~~--------~~~i~~~d~--~~~~~~~~~~-~-----~~v~~i~~~~dg~l~v~~-~~-----g 110 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNIL--------ERELHELHL--ASGRKTVHAL-P-----FMGSALAKISDSKQLIAS-DD-----G 110 (326)
T ss_dssp EEEEETTTTEEEEEEGG--------GTEEEEEET--TTTEEEEEEC-S-----SCEEEEEEEETTEEEEEE-TT-----E
T ss_pred CCeEeCCCCEEEEEECC--------CCEEEEEEC--CCCcEEEEEC-C-----CcceEEEEeCCCeEEEEE-CC-----C
Confidence 34567888877665322 235666654 3333333322 1 347778899999876653 21 3
Q ss_pred EEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCccee
Q 003363 181 QFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (826)
Q Consensus 181 ~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (826)
++.++ .+++.+.+........ ...+..+.++|||+ |++.......
T Consensus 111 l~~~d~~~g~~~~~~~~~~~~~-----~~~~~~i~~d~~G~-l~v~~~~~~~---------------------------- 156 (326)
T 2ghs_A 111 LFLRDTATGVLTLHAELESDLP-----GNRSNDGRMHPSGA-LWIGTMGRKA---------------------------- 156 (326)
T ss_dssp EEEEETTTCCEEEEECSSTTCT-----TEEEEEEEECTTSC-EEEEEEETTC----------------------------
T ss_pred EEEEECCCCcEEEEeeCCCCCC-----CCCCCCEEECCCCC-EEEEeCCCcC----------------------------
Confidence 77776 4566555543321110 11236889999998 5444322100
Q ss_pred ecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEE
Q 003363 260 EEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 339 (826)
Q Consensus 260 ~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~ 339 (826)
......||+++ +++++.+ .........++|+|||+. |++... ....|++
T Consensus 157 ---------~~~~~~l~~~~--~g~~~~~--~~~~~~~~~i~~s~dg~~----lyv~~~--------------~~~~I~~ 205 (326)
T 2ghs_A 157 ---------ETGAGSIYHVA--KGKVTKL--FADISIPNSICFSPDGTT----GYFVDT--------------KVNRLMR 205 (326)
T ss_dssp ---------CTTCEEEEEEE--TTEEEEE--EEEESSEEEEEECTTSCE----EEEEET--------------TTCEEEE
T ss_pred ---------CCCceEEEEEe--CCcEEEe--eCCCcccCCeEEcCCCCE----EEEEEC--------------CCCEEEE
Confidence 00236799999 5777665 222223457899999997 777641 2237889
Q ss_pred EEcccccchhhhhhhhcCCCCCC-cc---e---ecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCC
Q 003363 340 VRVSLYKSEASELELKESSSEDL-PV---V---NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 412 (826)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~-~~---~---~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~ 412 (826)
+|++. .++ .. + .+....+......+++||+. |++... ...|+++|..
T Consensus 206 ~d~~~---------------~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~l--wva~~~---------~~~v~~~d~~ 259 (326)
T 2ghs_A 206 VPLDA---------------RTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI--WNARWG---------EGAVDRYDTD 259 (326)
T ss_dssp EEBCT---------------TTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE--EEEEET---------TTEEEEECTT
T ss_pred EEccc---------------ccCCcccCceEEEECCCCCCCCCeeEECCCCCE--EEEEeC---------CCEEEEECCC
Confidence 98720 123 21 1 12222333456778899963 333321 2468999863
Q ss_pred CCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccc-cCCCEEEEEEEeCC
Q 003363 413 TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL-SDGCTMLLSSIWGS 466 (826)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws-~Dg~~l~~~~~~~~ 466 (826)
++.. ..+..+. ..+..++|+ +|++.|++++...+
T Consensus 260 -g~~~----------~~i~~~~---------~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 260 -GNHI----------ARYEVPG---------KQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp -CCEE----------EEEECSC---------SBEEEEEEESTTSCEEEEEEBCTT
T ss_pred -CCEE----------EEEECCC---------CCcEEEEEecCCCCEEEEEecCCC
Confidence 2221 0111110 012356787 89888888776543
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.52 E-value=3.2e-06 Score=93.41 Aligned_cols=168 Identities=12% Similarity=0.119 Sum_probs=99.4
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CC--------ceeEEEecCCCccccccCCCcccceeecCC-CCeEE
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS--QS--------QLEKEFHVPQTVHGSVYADGWFEGISWNSD-ETLIA 223 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~--------~~~~~~~~~~~~~g~v~~~~~~~~~~wSPD-g~~ia 223 (826)
.+...+|||||++||...... +....+.+|+ .+ +.........+..+.| ..++|+|+ ++.|+
T Consensus 94 ~v~~l~~spdg~~lav~~~sg-s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V------~~v~~~p~~~~~la 166 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSS-EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMV------IDMKWNPTVPSMVA 166 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEET-TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSE------EEEEECSSCTTEEE
T ss_pred cccEEEEcCCCCEEEEEEecc-CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCce------EEEEECCCCCCEEE
Confidence 488899999999998642111 1223455662 11 1111122222222333 79999998 66666
Q ss_pred EEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEe
Q 003363 224 YVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWA 303 (826)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wS 303 (826)
..+.+ ..|.+||+.++...... ......+..++|+
T Consensus 167 s~s~D--------------------------------------------g~v~iwD~~~~~~~~~~-~~~~~~v~~v~ws 201 (434)
T 2oit_A 167 VCLAD--------------------------------------------GSIAVLQVTETVKVCAT-LPSTVAVTSVCWS 201 (434)
T ss_dssp EEETT--------------------------------------------SCEEEEEESSSEEEEEE-ECGGGCEEEEEEC
T ss_pred EEECC--------------------------------------------CeEEEEEcCCCcceeec-cCCCCceeEEEEc
Confidence 65432 56999999887543221 2233467789999
Q ss_pred eCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCC-------CCccccC
Q 003363 304 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-------SISSAFF 376 (826)
Q Consensus 304 PDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~-------~~~~~~~ 376 (826)
|||+. |+..+ .+..|+.+|+ .+.....+.. +...+..
T Consensus 202 pdg~~----lasgs---------------~dg~v~iwd~-----------------~~~~~~~~~~~~~~~~~~~~~v~~ 245 (434)
T 2oit_A 202 PKGKQ----LAVGK---------------QNGTVVQYLP-----------------TLQEKKVIPCPPFYESDHPVRVLD 245 (434)
T ss_dssp TTSSC----EEEEE---------------TTSCEEEECT-----------------TCCEEEEECCCTTCCTTSCEEEEE
T ss_pred CCCCE----EEEEc---------------CCCcEEEEcc-----------------CCcccccccCCcccCCCCceeEEE
Confidence 99998 88766 2346888887 3122222221 1235778
Q ss_pred ceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCC
Q 003363 377 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (826)
Q Consensus 377 p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~ 414 (826)
..|++++.+++..+..+ |.......++++++...
T Consensus 246 v~w~~~~~~l~~~~~~d----g~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 246 VLWIGTYVFAIVYAAAD----GTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEETTEEEEEEEETT----CCSSSCCEEEEEECCCT
T ss_pred EEEecCceEEEEEccCC----CccCCCCceEEEEeccC
Confidence 89999998876555443 11112345888888764
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=98.50 E-value=8.7e-06 Score=84.86 Aligned_cols=166 Identities=11% Similarity=0.049 Sum_probs=83.8
Q ss_pred cEEEEeCC---CCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCC
Q 003363 156 ASAVVPSP---SGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (826)
Q Consensus 156 ~~~~~~SP---dG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~ 230 (826)
+...+||| ||+.||-.+.+ ..+.+| ..|+..+.+......... ....+|||||+.++..+.+..
T Consensus 181 v~~l~fs~~~g~~~~LaSgS~D-----~TIkIWDl~TGk~l~tL~g~~~~v~~------v~~vafSpdG~~lvs~s~~~~ 249 (356)
T 2w18_A 181 ETILTFAEVQGMQEALLGTTIM-----NNIVIWNLKTGQLLKKMHIDDSYQAS------VCHKAYSEMGLLFIVLSHPCA 249 (356)
T ss_dssp SCEEEEEEEETSTTEEEEEETT-----SEEEEEETTTCCEEEEEECCC---CC------CEEEEEEETTEEEEEEC----
T ss_pred eeeEEeeccCCCCceEEEecCC-----CcEEEEECCCCcEEEEEcCCCcceee------eEEEEECCCCCEEEEeccCCC
Confidence 44445555 44445444333 367788 345544444311110001 145689999998887654221
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEecc--CCCCCCccceEEEeeCCCC
Q 003363 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK--GIPKSLSVGQVVWAPLNEG 308 (826)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~~~~wSPDg~~ 308 (826)
. | ...++.....|.+||+.+|+...+. ..+..........+.+|..
T Consensus 250 ~----w----------------------------~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~ 297 (356)
T 2w18_A 250 K----E----------------------------SESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHC 297 (356)
T ss_dssp ----------------------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTE
T ss_pred c----c----------------------------eeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCE
Confidence 0 0 1122335678899999998764331 0011100001112222333
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCcccc-CceecCCCCEE
Q 003363 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAF-FPRFSPDGKFL 386 (826)
Q Consensus 309 ~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~-~p~~SpDG~~l 386 (826)
++-.+ .+..|.++|+ .+++ ...|..+..... ..+|||||++|
T Consensus 298 ----lASgS---------------~DgTIkIWDl-----------------~tGk~l~tL~gH~~~vvs~vafSPDG~~L 341 (356)
T 2w18_A 298 ----AAAIL---------------TSGTIAIWDL-----------------LLGQCTALLPPVSDQHWSFVKWSGTDSHL 341 (356)
T ss_dssp ----EEEEE---------------TTSCEEEEET-----------------TTCSEEEEECCC--CCCCEEEECSSSSEE
T ss_pred ----EEEEc---------------CCCcEEEEEC-----------------CCCcEEEEecCCCCCeEEEEEECCCCCEE
Confidence 33322 3347999998 6665 456665654444 47999999998
Q ss_pred EEEeccCCCCCCCCcccceEEEEeC
Q 003363 387 VFLSAKSSVDSGAHSATDSLHRIDW 411 (826)
Q Consensus 387 ~f~s~~~~~~~g~~~~~~~l~~~d~ 411 (826)
+-.+.+ ..|++||.
T Consensus 342 aSGS~D-----------~TIklWd~ 355 (356)
T 2w18_A 342 LAGQKD-----------GNIFVYHY 355 (356)
T ss_dssp EEECTT-----------SCEEEEEE
T ss_pred EEEECC-----------CcEEEecC
Confidence 866654 34777764
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-05 Score=84.77 Aligned_cols=219 Identities=9% Similarity=0.011 Sum_probs=121.9
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
.....++|||| +| |+.+.. ...+..++ ..++..+.+.+.... +. .....++.+ ++++|+.. ..
T Consensus 85 ~p~~i~~~~~g-~l-yv~~~~--~~~v~~iD~~t~~~~~~i~~g~~~-~~---~~~p~~i~~--~~~~lyv~-~~----- 148 (328)
T 3dsm_A 85 SPRYIHFLSDE-KA-YVTQIW--DYRIFIINPKTYEITGYIECPDMD-ME---SGSTEQMVQ--YGKYVYVN-CW----- 148 (328)
T ss_dssp SEEEEEEEETT-EE-EEEEBS--CSEEEEEETTTTEEEEEEECTTCC-TT---TCBCCCEEE--ETTEEEEE-EC-----
T ss_pred CCcEEEEeCCC-eE-EEEECC--CCeEEEEECCCCeEEEEEEcCCcc-cc---CCCcceEEE--ECCEEEEE-cC-----
Confidence 46678899998 55 554421 23577776 455555555543300 00 000146666 56665443 21
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (826)
| ....|.++|++++++... ++.......+.++|||+ +
T Consensus 149 ------------------------------~------~~~~v~viD~~t~~~~~~--i~~g~~p~~i~~~~dG~-----l 185 (328)
T 3dsm_A 149 ------------------------------S------YQNRILKIDTETDKVVDE--LTIGIQPTSLVMDKYNK-----M 185 (328)
T ss_dssp ------------------------------T------TCCEEEEEETTTTEEEEE--EECSSCBCCCEECTTSE-----E
T ss_pred ------------------------------C------CCCEEEEEECCCCeEEEE--EEcCCCccceEEcCCCC-----E
Confidence 0 125799999999886544 23333456789999998 6
Q ss_pred EEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcce-ecCCC-CccccCceecCCCCEEEEEec
Q 003363 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLTES-ISSAFFPRFSPDGKFLVFLSA 391 (826)
Q Consensus 314 vf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~Lt~~-~~~~~~p~~SpDG~~l~f~s~ 391 (826)
++++...... ..+ ......|+++|. ++++.. .+.-. .......+|+|||++|++...
T Consensus 186 ~v~~~~~~~~---~~~-~~~~~~v~~id~-----------------~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 186 WTITDGGYEG---SPY-GYEAPSLYRIDA-----------------ETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp EEEBCCBCTT---CSS-CBCCCEEEEEET-----------------TTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred EEEECCCccC---Ccc-ccCCceEEEEEC-----------------CCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence 6665322100 000 001247999997 555543 33222 224677899999998765431
Q ss_pred cCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEe--CCeEE
Q 003363 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW--GSSQV 469 (826)
Q Consensus 392 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~--~~~~~ 469 (826)
.|+++|..+++..... +.+ . .. .....++++|++..||++... .....
T Consensus 245 -------------~v~~~d~~t~~~~~~~-----~~~---~--~~-------~~p~gi~vdp~~g~lyva~~~~y~~~~~ 294 (328)
T 3dsm_A 245 -------------DIWRMPVEADRVPVRP-----FLE---F--RD-------TKYYGLTVNPNNGEVYVADAIDYQQQGI 294 (328)
T ss_dssp -------------SEEEEETTCSSCCSSC-----SBC---C--CS-------SCEEEEEECTTTCCEEEEECTTSSSEEE
T ss_pred -------------EEEEEECCCCceeeee-----eec---C--CC-------CceEEEEEcCCCCeEEEEcccccccCCE
Confidence 4899998876642110 000 0 00 122356789877778776411 34567
Q ss_pred EEEEECCCCcEEEe
Q 003363 470 IISVNVSSGELLRI 483 (826)
Q Consensus 470 l~~vdl~tg~~~~l 483 (826)
|+++|.++..+..+
T Consensus 295 V~v~d~~g~~~~~i 308 (328)
T 3dsm_A 295 VYRYSPQGKLIDEF 308 (328)
T ss_dssp EEEECTTCCEEEEE
T ss_pred EEEECCCCCEEEEE
Confidence 88889873334444
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.6e-05 Score=88.05 Aligned_cols=298 Identities=10% Similarity=-0.010 Sum_probs=153.7
Q ss_pred ccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCc
Q 003363 123 NKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTV 200 (826)
Q Consensus 123 ~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~ 200 (826)
+.....+.++++.+. .....+.... ..+....|+ ++.|+.....+ .+.+|+ .++...... +.
T Consensus 135 g~~dg~i~vwd~~~~-~~~~~~~~h~-----~~v~~~~~~--~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~---~h 198 (445)
T 2ovr_B 135 GSDDNTLKVWSAVTG-KCLRTLVGHT-----GGVWSSQMR--DNIIISGSTDR-----TLKVWNAETGECIHTLY---GH 198 (445)
T ss_dssp EETTSCEEEEETTTC-CEEEECCCCS-----SCEEEEEEE--TTEEEEEETTS-----CEEEEETTTTEEEEEEC---CC
T ss_pred EECCCcEEEEECCCC-cEEEEEcCCC-----CCEEEEEec--CCEEEEEeCCC-----eEEEEECCcCcEEEEEC---CC
Confidence 334556777765322 2222232222 457777776 56777665433 456663 333333322 22
Q ss_pred cccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEc
Q 003363 201 HGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI 280 (826)
Q Consensus 201 ~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~ 280 (826)
.+.| ..+.|+ ++.|+..+.+.... .|+............+........| +....+++..+..|.+||+
T Consensus 199 ~~~v------~~~~~~--~~~l~s~s~dg~i~--~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~ 266 (445)
T 2ovr_B 199 TSTV------RCMHLH--EKRVVSGSRDATLR--VWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDP 266 (445)
T ss_dssp SSCE------EEEEEE--TTEEEEEETTSEEE--EEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEG
T ss_pred CCcE------EEEEec--CCEEEEEeCCCEEE--EEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEEC
Confidence 2222 566664 56777776665432 2222111111111222222333334 3233445556788999999
Q ss_pred cCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCC
Q 003363 281 NSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE 360 (826)
Q Consensus 281 ~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 360 (826)
.+++..... ......+..+.| |++. |+..+ .+..|..+|+ .
T Consensus 267 ~~~~~~~~~-~~~~~~v~~~~~--~~~~----l~~~~---------------~d~~i~i~d~-----------------~ 307 (445)
T 2ovr_B 267 ETETCLHTL-QGHTNRVYSLQF--DGIH----VVSGS---------------LDTSIRVWDV-----------------E 307 (445)
T ss_dssp GGTEEEEEE-CCCSSCEEEEEE--CSSE----EEEEE---------------TTSCEEEEET-----------------T
T ss_pred CCCcEeEEe-cCCCCceEEEEE--CCCE----EEEEe---------------CCCeEEEEEC-----------------C
Confidence 888755431 223334556666 7876 66655 3347889998 4
Q ss_pred CCc-ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCc
Q 003363 361 DLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFP 439 (826)
Q Consensus 361 ~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 439 (826)
+++ ...+..+...+. .++++|+.|+..+.+ ..|.+||+.+++..... .... .
T Consensus 308 ~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~~d-----------g~i~vwd~~~~~~~~~~----------~~~~--~-- 360 (445)
T 2ovr_B 308 TGNCIHTLTGHQSLTS--GMELKDNILVSGNAD-----------STVKIWDIKTGQCLQTL----------QGPN--K-- 360 (445)
T ss_dssp TCCEEEEECCCCSCEE--EEEEETTEEEEEETT-----------SCEEEEETTTCCEEEEE----------CSTT--S--
T ss_pred CCCEEEEEcCCcccEE--EEEEeCCEEEEEeCC-----------CeEEEEECCCCcEEEEE----------ccCC--C--
Confidence 444 344544444343 345577777655543 45899998775432110 0000 0
Q ss_pred ccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec------CCCCCeeeEEEeecCCEEEEEEeCCCCCC
Q 003363 440 GLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT------PAESNFSWSLLTLDGDNIIAVSSSPVDVP 513 (826)
Q Consensus 440 g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt------~~~~~~~~~~~s~dg~~l~~~~s~~~~p~ 513 (826)
....+..+.| +++.| ++...++ .|..+|+.+++..+.. ...+.+....|++++..++....+...+.
T Consensus 361 --~~~~v~~~~~--~~~~l-~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~ 433 (445)
T 2ovr_B 361 --HQSAVTCLQF--NKNFV-ITSSDDG--TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 433 (445)
T ss_dssp --CSSCEEEEEE--CSSEE-EEEETTS--EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCC
T ss_pred --CCCCEEEEEE--CCCEE-EEEeCCC--eEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCcc
Confidence 0112234455 45544 4444444 4555688888755433 22223444567777665555555555577
Q ss_pred eEEEEeec
Q 003363 514 QVKYGYFV 521 (826)
Q Consensus 514 ~l~~~~~~ 521 (826)
.+++.++.
T Consensus 434 ~l~v~df~ 441 (445)
T 2ovr_B 434 KLLVLDFD 441 (445)
T ss_dssp EEEEEECC
T ss_pred EEEEEECC
Confidence 88888865
|
| >2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39 | Back alignment and structure |
|---|
Probab=98.44 E-value=3.9e-07 Score=82.27 Aligned_cols=82 Identities=17% Similarity=0.201 Sum_probs=55.2
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.|.||++| +. ...|... |+ ++|.|+++|+||.+. +.. +.. . .+++.+.+..+++. ++.+
T Consensus 22 ~~~vv~~H-~~----~~~~~~~---l~-~~~~v~~~d~~G~G~---s~~---~~~--~--~~~~~~~~~~~~~~--~~~~ 80 (131)
T 2dst_A 22 GPPVLLVA-EE----ASRWPEA---LP-EGYAFYLLDLPGYGR---TEG---PRM--A--PEELAHFVAGFAVM--MNLG 80 (131)
T ss_dssp SSEEEEES-SS----GGGCCSC---CC-TTSEEEEECCTTSTT---CCC---CCC--C--HHHHHHHHHHHHHH--TTCC
T ss_pred CCeEEEEc-CC----HHHHHHH---Hh-CCcEEEEECCCCCCC---CCC---CCC--C--HHHHHHHHHHHHHH--cCCC
Confidence 47899999 22 1223222 44 459999999999543 321 111 1 55555555555554 3457
Q ss_pred cEEEEEecchHHHHHHHHHhCCC
Q 003363 672 KVTVVGGSHGGFLTTHLIGQAPD 694 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~p~ 694 (826)
++.++|||+||.+++.++.++|.
T Consensus 81 ~~~lvG~S~Gg~~a~~~a~~~p~ 103 (131)
T 2dst_A 81 APWVLLRGLGLALGPHLEALGLR 103 (131)
T ss_dssp SCEEEECGGGGGGHHHHHHTTCC
T ss_pred ccEEEEEChHHHHHHHHHhcCCc
Confidence 89999999999999999999885
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.1e-05 Score=83.97 Aligned_cols=226 Identities=9% Similarity=0.021 Sum_probs=109.2
Q ss_pred ecccEEEEeCCC----CCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEe
Q 003363 153 MTGASAVVPSPS----GSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 226 (826)
Q Consensus 153 ~~~~~~~~~SPd----G~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~ 226 (826)
...+...++||| |++++.... ...+| .+++ .+.....+..+ .+.-..+||||+.++-..
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~-------~~~v~~l~~g~--lv~ss~~g~d~------~V~~~~~s~dG~~~~s~~ 175 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGN-------IKAVLGLTKRR--LVSSSGTLSDQ------QVEVMTFAEDGGGKENQF 175 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEE-------EEEEEEETTTE--EEEEESSSTTC------EEEEEEECTTSCEEEEEE
T ss_pred ccceEEEEECCCccccccEEEeCCC-------eEEEEecCCCc--EEEecccCCCC------cEEEEEECCCCceeeeec
Confidence 345778888999 888876432 12334 2222 22221122222 237788999998776433
Q ss_pred ecCCCCCCCccCCCCCCCCCCccCCCCCCcceeec--CCCccC-CCccCceEEEEEccCCce-EeccCCC-CCCccceEE
Q 003363 227 EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE--DWGETY-AGKRQPSLFVININSGEV-QAVKGIP-KSLSVGQVV 301 (826)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~g~~~-~~~~~~~l~v~d~~~g~~-~~l~~~~-~~~~~~~~~ 301 (826)
-... ......|++ +-++.+ ++..+..|.+||+++|+. +.+.+.. ....+..++
T Consensus 176 ~~~~----------------------~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~va 233 (356)
T 2w18_A 176 LMPP----------------------EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKA 233 (356)
T ss_dssp ECCC----------------------SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEE
T ss_pred cCCC----------------------ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEE
Confidence 2211 111222333 112333 334578999999999985 4442111 112445668
Q ss_pred EeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecC------CCCcccc
Q 003363 302 WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT------ESISSAF 375 (826)
Q Consensus 302 wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt------~~~~~~~ 375 (826)
|||||+. ++..+.+... +.+. .-..+..|..+|. .++...... .+.....
T Consensus 234 fSpdG~~----lvs~s~~~~~--w~la-SGs~D~tIklWd~-----------------~tgk~l~v~~~~~p~Gh~~~~l 289 (356)
T 2w18_A 234 YSEMGLL----FIVLSHPCAK--ESES-LRSPVFQLIVINP-----------------KTTLSVGVMLYCLPPGQAGRFL 289 (356)
T ss_dssp EEETTEE----EEEEC---------------CCEEEEEEET-----------------TTTEEEEEEEECCCTTCCCCEE
T ss_pred ECCCCCE----EEEeccCCCc--ceee-ccCCCcEEEEEEC-----------------CCCEEEEEEEeeccCCCcceeE
Confidence 9999997 7665421110 0000 0123345667776 455432211 1111111
Q ss_pred CceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCC-CCccccC
Q 003363 376 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL-SNPWLSD 454 (826)
Q Consensus 376 ~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~-~~~ws~D 454 (826)
.. +.+|..++-.+.+ ..|.+||+.+++......+.. ..+. .++|+||
T Consensus 290 sg--~~sg~~lASgS~D-----------gTIkIWDl~tGk~l~tL~gH~-------------------~~vvs~vafSPD 337 (356)
T 2w18_A 290 EG--DVKDHCAAAILTS-----------GTIAIWDLLLGQCTALLPPVS-------------------DQHWSFVKWSGT 337 (356)
T ss_dssp EE--EEETTEEEEEETT-----------SCEEEEETTTCSEEEEECCC---------------------CCCCEEEECSS
T ss_pred cc--ccCCCEEEEEcCC-----------CcEEEEECCCCcEEEEecCCC-------------------CCeEEEEEECCC
Confidence 11 2225555544433 359999999876532111110 0122 3689999
Q ss_pred CCEEEEEEEeCCeEEEEE
Q 003363 455 GCTMLLSSIWGSSQVIIS 472 (826)
Q Consensus 455 g~~l~~~~~~~~~~~l~~ 472 (826)
|++| ++...++..+||.
T Consensus 338 G~~L-aSGS~D~TIklWd 354 (356)
T 2w18_A 338 DSHL-LAGQKDGNIFVYH 354 (356)
T ss_dssp SSEE-EEECTTSCEEEEE
T ss_pred CCEE-EEEECCCcEEEec
Confidence 9966 4555566666664
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.40 E-value=5.2e-05 Score=81.58 Aligned_cols=204 Identities=13% Similarity=0.024 Sum_probs=96.3
Q ss_pred cCceEEEEEccCCceEeccCCCCC--CccceEEEeeCCCCCccEEEEEeecCc-ceeeeeeeec---cCCCceEEEEccc
Q 003363 271 RQPSLFVININSGEVQAVKGIPKS--LSVGQVVWAPLNEGLHQYLVFVGWSSE-TRKLGIKYCY---NRPCALYAVRVSL 344 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~--~~~~~~~wSPDg~~~~~~lvf~~~~~~-~~~~g~~~~~---~~~~~l~~~d~~~ 344 (826)
....|.++|.+++++..--..... ...-++.|+||++. ++.+.|... .++.|+.... .....|+.+|+
T Consensus 162 ~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~----mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~-- 235 (462)
T 2ece_A 162 GPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEV----LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL-- 235 (462)
T ss_dssp SCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTE----EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET--
T ss_pred CCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCE----EEEccCcCccccccccchhhhhhccCCEEEEEEC--
Confidence 457899999999887654111111 12235889999995 544433211 0111111100 23458999998
Q ss_pred ccchhhhhhhhcCCCCCCcc-eecCCC-Cc-cccCc--eecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCc
Q 003363 345 YKSEASELELKESSSEDLPV-VNLTES-IS-SAFFP--RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 419 (826)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~-~~Lt~~-~~-~~~~p--~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~ 419 (826)
.+++. ..+.-+ .+ ..... .|+|||++++....-... .-..+|+++..+.+...
T Consensus 236 ---------------~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~-----~Lss~V~v~~~d~g~~~-- 293 (462)
T 2ece_A 236 ---------------RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLK-----DLSSSIWLWFYEDGKWN-- 293 (462)
T ss_dssp ---------------TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETT-----TCCEEEEEEEEETTEEE--
T ss_pred ---------------CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeecc-----CCCceEEEEEecCCcee--
Confidence 44432 233322 11 12223 459999976544430000 01246776665442211
Q ss_pred ccceeeeeeeeeccCCCCCccc---c---cCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE---EecCC----
Q 003363 420 LEKIVDVIPVVQCAEGDCFPGL---Y---SSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL---RITPA---- 486 (826)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~f~g~---~---~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~---~lt~~---- 486 (826)
...++.+-..+..+..+.+ + ......+.+|+||+.||++....+...+|.++ +.++.+ ++..+
T Consensus 294 ---~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~-d~~~~~lv~~I~tGG~~~ 369 (462)
T 2ece_A 294 ---AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS-NPFKPVLTGKVKLGGIFH 369 (462)
T ss_dssp ---EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS-STTSCEEEEEEECBTTTT
T ss_pred ---EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec-CCCCcEEEEEEEeCCeec
Confidence 1111111110000111100 0 01345677999999888765444444444442 233222 22222
Q ss_pred -------C---CCeeeEEEeecCCEEEEEE
Q 003363 487 -------E---SNFSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 487 -------~---~~~~~~~~s~dg~~l~~~~ 506 (826)
. +.-....+++||+++++..
T Consensus 370 ~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 370 RADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred cccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 0 0123357888998877665
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.1e-05 Score=83.31 Aligned_cols=87 Identities=18% Similarity=0.101 Sum_probs=50.5
Q ss_pred cccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCC---------CCCccccc
Q 003363 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEG---------DCFPGLYS 443 (826)
Q Consensus 373 ~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---------~~f~g~~~ 443 (826)
......+|||||+| |++++. .+.|.++|+...+... ++..+.+.+. ....
T Consensus 322 ~pa~I~lS~DGrfL-YVSnrg---------~d~VavfdV~d~~~~~-------lv~~I~tGG~~~~~~~~~G~~~~---- 380 (462)
T 2ece_A 322 LVTDIDISLDDKFL-YLSLWG---------IGEVRQYDISNPFKPV-------LTGKVKLGGIFHRADHPAGHKLT---- 380 (462)
T ss_dssp CCCCEEECTTSCEE-EEEETT---------TTEEEEEECSSTTSCE-------EEEEEECBTTTTCBCCTTSCCCC----
T ss_pred ceeEEEECCCCCEE-EEEeCC---------CCEEEEEEecCCCCcE-------EEEEEEeCCeeccccccccccCC----
Confidence 46778899999976 677663 3678888875322211 1122222110 0111
Q ss_pred CCCCCCccccCCCEEEEEEE-----------eCCeEEEEEE--ECCCCcEE
Q 003363 444 SSILSNPWLSDGCTMLLSSI-----------WGSSQVIISV--NVSSGELL 481 (826)
Q Consensus 444 ~~~~~~~ws~Dg~~l~~~~~-----------~~~~~~l~~v--dl~tg~~~ 481 (826)
.....+.+||||++||++.. .+....++.+ |.++| ++
T Consensus 381 ggPr~~~lSpDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~~G-L~ 430 (462)
T 2ece_A 381 GAPQMLEISRDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANPSGG-LE 430 (462)
T ss_dssp SCCCCEEECTTSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECTTSC-EE
T ss_pred CCCCEEEEcCCCCEEEEEcCCcccccccccCCCCceEEEEEEecCCCC-ce
Confidence 13457789999999988862 2334566644 66667 44
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.37 E-value=3.8e-05 Score=80.26 Aligned_cols=196 Identities=11% Similarity=0.029 Sum_probs=103.3
Q ss_pred eEEEEEccCCceEec-cCCCC---CCccceEEEeeCCCCCccEEEEEeecCcceeeeee-eeccCCCceEEEEcccccch
Q 003363 274 SLFVININSGEVQAV-KGIPK---SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK-YCYNRPCALYAVRVSLYKSE 348 (826)
Q Consensus 274 ~l~v~d~~~g~~~~l-~~~~~---~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~-~~~~~~~~l~~~d~~~~~~~ 348 (826)
.|+++|.+ |+.+.+ ..... ...+..++++|||+ |+++............ ........||+++.
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-----l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~------ 160 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-----LWITAPAGEVAPADYTRSMQEKFGSIYCFTT------ 160 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-----EEEEECBCBCTTSCCCBTTSSSCEEEEEECT------
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-----EEEEecCcccccccccccccCCCCeEEEECC------
Confidence 68999988 777655 31111 12466889999996 7666532100000000 00011236888886
Q ss_pred hhhhhhhcCCCCCCcceecCCCCccccCceec----CCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCccccee
Q 003363 349 ASELELKESSSEDLPVVNLTESISSAFFPRFS----PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 424 (826)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~S----pDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 424 (826)
+ ++...+...........|+ |||+.|++.... ...|+++|+...+.. . ..
T Consensus 161 -----------~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~----------~~~i~~~~~~~~g~~--~--~~ 214 (314)
T 1pjx_A 161 -----------D-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP----------TKKLWSYDIKGPAKI--E--NK 214 (314)
T ss_dssp -----------T-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT----------TTEEEEEEEEETTEE--E--EE
T ss_pred -----------C-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECC----------CCeEEEEECCCCCcc--c--cc
Confidence 4 4444443333334567899 999877665533 256888887521110 0 00
Q ss_pred eeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcE-EEecCCCCCeeeEEEeecCCEEE
Q 003363 425 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL-LRITPAESNFSWSLLTLDGDNII 503 (826)
Q Consensus 425 ~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~-~~lt~~~~~~~~~~~s~dg~~l~ 503 (826)
.+. ...+... + .....+++++||+ |+++... ...|+++|.++|+. ..+...........++++++.|+
T Consensus 215 ~~~--~~~~~~~-~-----~~p~~i~~d~~G~-l~v~~~~--~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~ 283 (314)
T 1pjx_A 215 KVW--GHIPGTH-E-----GGADGMDFDEDNN-LLVANWG--SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIF 283 (314)
T ss_dssp EEE--EECCCCS-S-----CEEEEEEEBTTCC-EEEEEET--TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEE
T ss_pred eEE--EECCCCC-C-----CCCCceEECCCCC-EEEEEcC--CCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEE
Confidence 000 0011000 0 0123567889996 6555432 33688889886654 33433323344456778888776
Q ss_pred EEEeCCCCCCeEEEEeec
Q 003363 504 AVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 504 ~~~s~~~~p~~l~~~~~~ 521 (826)
+..... ..|+.+++.
T Consensus 284 v~~~~~---~~l~~~~~~ 298 (314)
T 1pjx_A 284 VTEHEN---NAVWKFEWQ 298 (314)
T ss_dssp EEETTT---TEEEEEECS
T ss_pred EEeCCC---CeEEEEeCC
Confidence 665432 457777754
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2.1e-06 Score=94.87 Aligned_cols=93 Identities=13% Similarity=0.088 Sum_probs=59.2
Q ss_pred CceEEEEEccCC-----c-------eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEE
Q 003363 272 QPSLFVININSG-----E-------VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 339 (826)
Q Consensus 272 ~~~l~v~d~~~g-----~-------~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~ 339 (826)
...|.+||+.++ + .+.+ ......+..++|+|++.. ++.++. .+..|++
T Consensus 117 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~v~~~p~~~~----~las~s--------------~Dg~v~i 176 (434)
T 2oit_A 117 GSIIAFFDVRTFSNEAKQQKRPFAYHKLL--KDAGGMVIDMKWNPTVPS----MVAVCL--------------ADGSIAV 176 (434)
T ss_dssp EEEEEEEEHHHHHCTTCSSCCCSEEEECC--CSGGGSEEEEEECSSCTT----EEEEEE--------------TTSCEEE
T ss_pred CceEEEEEccccccCCcCCcceeeeeecc--CCCCCceEEEEECCCCCC----EEEEEE--------------CCCeEEE
Confidence 367899998764 1 1111 112346788999999544 544441 2347888
Q ss_pred EEcccccchhhhhhhhcCCCCCCcc-eecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCC
Q 003363 340 VRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 412 (826)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~ 412 (826)
+|+ .++.. .....+...+...+|||||++|+..+.+ ..|.+||..
T Consensus 177 wD~-----------------~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~d-----------g~v~iwd~~ 222 (434)
T 2oit_A 177 LQV-----------------TETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQN-----------GTVVQYLPT 222 (434)
T ss_dssp EEE-----------------SSSEEEEEEECGGGCEEEEEECTTSSCEEEEETT-----------SCEEEECTT
T ss_pred EEc-----------------CCCcceeeccCCCCceeEEEEcCCCCEEEEEcCC-----------CcEEEEccC
Confidence 888 44422 2223334567889999999999877644 358888876
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.31 E-value=9.4e-05 Score=75.36 Aligned_cols=174 Identities=5% Similarity=-0.033 Sum_probs=94.3
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
..|+++|.+++....+. ......+..++++|||+ |++... ....|++++.
T Consensus 87 ~~i~~~d~~~~~~~~~~-~~~~~~p~~i~~~~~g~-----l~v~~~--------------~~~~i~~~~~---------- 136 (270)
T 1rwi_B 87 NRVVTLAAGSNNQTVLP-FDGLNYPEGLAVDTQGA-----VYVADR--------------GNNRVVKLAA---------- 136 (270)
T ss_dssp TEEEEECTTCSCCEECC-CCSCSSEEEEEECTTCC-----EEEEEG--------------GGTEEEEECT----------
T ss_pred CEEEEEeCCCceEeeee-cCCcCCCcceEECCCCC-----EEEEEC--------------CCCEEEEEEC----------
Confidence 46889998877666552 12223567889999886 665541 1236888875
Q ss_pred hhhcCCCCCCcceecC-CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeee
Q 003363 353 ELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 431 (826)
Q Consensus 353 ~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 431 (826)
.+....... ..........++|||+ |++.... ...|+++|..++........
T Consensus 137 -------~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~----------~~~i~~~~~~~~~~~~~~~~--------- 189 (270)
T 1rwi_B 137 -------GSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTD----------NNRVVKLEAESNNQVVLPFT--------- 189 (270)
T ss_dssp -------TCCSCEECCCCSCCSCCCEEECTTCC-EEEEEGG----------GTEEEEECTTTCCEEECCCS---------
T ss_pred -------CCceeEeeccccCCCceeEEEeCCCC-EEEEECC----------CCEEEEEecCCCceEeeccc---------
Confidence 333222222 2223456788999997 4433322 25699998766432111000
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC-CCeeeEEEeecCCEEEEEEeCCC
Q 003363 432 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPV 510 (826)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~-~~~~~~~~s~dg~~l~~~~s~~~ 510 (826)
.+ .....+++++|| .|+++.. +...|+++|.++.....+.... .......++++|+ +++.....
T Consensus 190 -----~~-----~~p~~i~~d~~g-~l~v~~~--~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~- 254 (270)
T 1rwi_B 190 -----DI-----TAPWGIAVDEAG-TVYVTEH--NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT-VYVADRGN- 254 (270)
T ss_dssp -----SC-----CSEEEEEECTTC-CEEEEET--TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCC-EEEEEGGG-
T ss_pred -----CC-----CCceEEEECCCC-CEEEEEC--CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCC-EEEEECCC-
Confidence 00 122356788898 4766543 3345788888776555443222 2233345566664 44443322
Q ss_pred CCCeEEEEee
Q 003363 511 DVPQVKYGYF 520 (826)
Q Consensus 511 ~p~~l~~~~~ 520 (826)
..|.++++
T Consensus 255 --~~v~~~~~ 262 (270)
T 1rwi_B 255 --DRVVKLTS 262 (270)
T ss_dssp --TEEEEECC
T ss_pred --CEEEEEcC
Confidence 23555554
|
| >2hih_A Lipase 46 kDa form; A1 phospholipase, phospholipid binding, hydrolase; 2.86A {Staphylococcus hyicus} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.7e-06 Score=92.40 Aligned_cols=108 Identities=13% Similarity=0.086 Sum_probs=66.5
Q ss_pred CCCcEEEEEcCCCCCC------CCccch----HHHHHHHHCCcEEEEECCCCCCCCchhhhhcC---------CCCCCc-
Q 003363 590 SCDPLIVVLHGGPHSV------SLSSYS----KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL---------PGKVGS- 649 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~------~~~~~~----~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~---------~~~~~~- 649 (826)
+..|.||++||..... ....|. ..+..|+++||.|+++|++| +|.+..... ....+.
T Consensus 50 ~~~~pVVLvHG~~g~~~~~~~~~~~~W~~~~~~l~~~L~~~Gy~Via~Dl~G---~G~S~~~~~~l~~~i~~g~g~sg~~ 126 (431)
T 2hih_A 50 KNKDPFVFVHGFTGFVGEVAAKGENYWGGTKANLRNHLRKAGYETYEASVSA---LASNHERAVELYYYLKGGRVDYGAA 126 (431)
T ss_dssp SCSSCEEEECCTTCCCGGGSCTTCCTTTTTTCCHHHHHHHTTCCEEEECCCS---SSCHHHHHHHHHHHHHCEEEECCHH
T ss_pred CCCCeEEEECCCCCCcccccccchhhhhccHHHHHHHHHhCCCEEEEEcCCC---CCCCccchHHhhhhhhhcccccccc
Confidence 3456699999965431 123443 47888999999999999999 443321000 000000
Q ss_pred --------chHHHHHHHHHHHHHcCCCC-CCcEEEEEecchHHHHHHHHHh--------------------------CCC
Q 003363 650 --------QDVNDVLTAIDHVIDMGLAN-PSKVTVVGGSHGGFLTTHLIGQ--------------------------APD 694 (826)
Q Consensus 650 --------~~~~D~~~~i~~l~~~~~~d-~~rv~l~G~S~GG~~a~~~a~~--------------------------~p~ 694 (826)
.-.+|+.+. ++. +. .+++.|+||||||.++..++.. +|+
T Consensus 127 ~~~~~~~~~~a~dl~~l----l~~--l~~~~kv~LVGHSmGG~iA~~lA~~l~~~~~~~~~~~~~~gg~i~~l~~g~~p~ 200 (431)
T 2hih_A 127 HSEKYGHERYGKTYEGV----LKD--WKPGHPVHFIGHSMGGQTIRLLEHYLRFGDKAEIAYQQQHGGIISELFKGGQDN 200 (431)
T ss_dssp HHHHHTCCSEEEEECCS----CTT--CBTTBCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHCSCCCHHHHCCCCS
T ss_pred ccccCCHHHHHHHHHHH----HHH--hCCCCCEEEEEEChhHHHHHHHHHHhccccccchhhccccccccccccccCccc
Confidence 000011111 111 12 3789999999999999998765 688
Q ss_pred ceeEEEecCCcc
Q 003363 695 KFVAAAARNPLC 706 (826)
Q Consensus 695 ~~~a~v~~~p~~ 706 (826)
+++++|++++..
T Consensus 201 ~V~slv~i~tP~ 212 (431)
T 2hih_A 201 MVTSITTIATPH 212 (431)
T ss_dssp CEEEEEEESCCT
T ss_pred ceeEEEEECCCC
Confidence 999999888754
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00018 Score=75.64 Aligned_cols=227 Identities=9% Similarity=-0.001 Sum_probs=131.6
Q ss_pred eEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCC
Q 003363 167 KLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGS 245 (826)
Q Consensus 167 ~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~ 245 (826)
+|+|....+ +..++ .+.+...+....... .++.|++++++|+++-.
T Consensus 3 ~ll~~~~~~-----I~~i~~~~~~~~~~~~~~~~p----------~g~~~d~~~~~ly~~D~------------------ 49 (316)
T 1ijq_A 3 YLFFTNRHE-----VRKMTLDRSEYTSLIPNLRNV----------VALDTEVASNRIYWSDL------------------ 49 (316)
T ss_dssp EEEEECBSS-----EEEEETTSCCCEEEECSCSSE----------EEEEEETTTTEEEEEET------------------
T ss_pred EEEEECCCe-----EEEEECCCcceEehhcCCCce----------EEEEEEeCCCEEEEEEC------------------
Confidence 455654433 77777 444444444322233 58999999988887632
Q ss_pred CCccCCCCCCcceeecCCCccCCCccCceEEEEEccC----CceEeccCCCCC-CccceEEEeeCCCCCccEEEEEeecC
Q 003363 246 SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS----GEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSS 320 (826)
Q Consensus 246 ~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~----g~~~~l~~~~~~-~~~~~~~wSPDg~~~~~~lvf~~~~~ 320 (826)
....|+++++++ ...+.+ .... ..+..+++.+.++. |+++..
T Consensus 50 -------------------------~~~~I~~~~~~g~~~~~~~~~~--~~~~~~~p~glavd~~~~~----ly~~d~-- 96 (316)
T 1ijq_A 50 -------------------------SQRMICSTQLDRAHGVSSYDTV--ISRDIQAPDGLAVDWIHSN----IYWTDS-- 96 (316)
T ss_dssp -------------------------TTTEEEEEEC--------CEEE--ECSSCSCCCEEEEETTTTE----EEEEET--
T ss_pred -------------------------CCCcEEEEECCCCCCCcccEEE--EeCCCCCcCEEEEeecCCe----EEEEEC--
Confidence 236799999876 333333 2222 34567888887776 776642
Q ss_pred cceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCC-CCccccCceecCCCCEEEEEeccCCCCCCC
Q 003363 321 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGA 399 (826)
Q Consensus 321 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~ 399 (826)
....|.++++ ++...+.+.. ........++.|++.+|+|....
T Consensus 97 ------------~~~~I~~~~~-----------------~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~------- 140 (316)
T 1ijq_A 97 ------------VLGTVSVADT-----------------KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG------- 140 (316)
T ss_dssp ------------TTTEEEEEET-----------------TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-------
T ss_pred ------------CCCEEEEEeC-----------------CCCceEEEEECCCCCcceEEeCCCCCEEEEEccC-------
Confidence 2236888887 5444444432 33445667889988888877532
Q ss_pred CcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc
Q 003363 400 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 479 (826)
Q Consensus 400 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~ 479 (826)
....|+++++++...+.+... .+ .....++|+++++.||++- .....|+++|++++.
T Consensus 141 --~~~~I~~~~~dG~~~~~~~~~--------------~~-----~~P~gla~d~~~~~lY~~D--~~~~~I~~~d~dg~~ 197 (316)
T 1ijq_A 141 --TPAKIKKGGLNGVDIYSLVTE--------------NI-----QWPNGITLDLLSGRLYWVD--SKLHSISSIDVNGGN 197 (316)
T ss_dssp --SSCEEEEEETTSCCEEEEECS--------------SC-----SCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCS
T ss_pred --CCCeEEEEcCCCCCeEEEEEC--------------CC-----CCceEEEEeccCCEEEEEE--CCCCeEEEEecCCCc
Confidence 125799999876332111000 00 0123678999988898864 344578999998776
Q ss_pred EEEecCCCC-CeeeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 003363 480 LLRITPAES-NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 480 ~~~lt~~~~-~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 521 (826)
.+.+..... ...-..++.+++.+|++... ..+|+.++..
T Consensus 198 ~~~~~~~~~~~~~P~giav~~~~ly~~d~~---~~~V~~~~~~ 237 (316)
T 1ijq_A 198 RKTILEDEKRLAHPFSLAVFEDKVFWTDII---NEAIFSANRL 237 (316)
T ss_dssp CEEEEECTTTTSSEEEEEEETTEEEEEETT---TTEEEEEETT
T ss_pred eEEEeecCCccCCcEEEEEECCEEEEEECC---CCeEEEEeCC
Confidence 666643221 11112445567777776532 2457777643
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=0.0008 Score=70.96 Aligned_cols=115 Identities=11% Similarity=0.034 Sum_probs=61.3
Q ss_pred ccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCcccc
Q 003363 374 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 453 (826)
Q Consensus 374 ~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~ 453 (826)
....+++||+..|+..... ...|.++|..+++... .+..+.. ...+..+.++|
T Consensus 198 p~gia~d~~~g~l~v~d~~----------~~~I~~~~~~~G~~~~----------~~~~~~~-------~~~~~~~~~~p 250 (329)
T 3fvz_A 198 PHSLALVPHLDQLCVADRE----------NGRIQCFKTDTKEFVR----------EIKHASF-------GRNVFAISYIP 250 (329)
T ss_dssp EEEEEEETTTTEEEEEETT----------TTEEEEEETTTCCEEE----------EECCTTT-------TTCEEEEEEET
T ss_pred CcEEEEECCCCEEEEEECC----------CCEEEEEECCCCcEEE----------EEecccc-------CCCcceeeecC
Confidence 5667899996666555432 3579999987554321 1111000 01222455667
Q ss_pred CCCEEEEEEE-----eCCeEEEEEEECCCCcEEEecC----CCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 003363 454 DGCTMLLSSI-----WGSSQVIISVNVSSGELLRITP----AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 454 Dg~~l~~~~~-----~~~~~~l~~vdl~tg~~~~lt~----~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 521 (826)
| .++.... ......++.+|+.+|++..... .........++++| .+++...... +|.+.++.
T Consensus 251 -g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~---~I~~~~~~ 321 (329)
T 3fvz_A 251 -G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTN---TVWKFTLT 321 (329)
T ss_dssp -T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSSC---CEEEEEEE
T ss_pred -C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCCC---EEEEEeCC
Confidence 3 2322211 1233478889988888776542 11123445677777 5555554433 46666654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00015 Score=73.26 Aligned_cols=181 Identities=18% Similarity=0.137 Sum_probs=105.7
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhh
Q 003363 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (826)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (826)
...|.++|+++|++..-...+. ......++++|+. |+...| ....++++|.
T Consensus 43 ~s~v~~iD~~tg~v~~~i~l~~--~~fgeGi~~~g~~----lyv~t~--------------~~~~v~viD~--------- 93 (266)
T 2iwa_A 43 RSSVRQVALQTGKVENIHKMDD--SYFGEGLTLLNEK----LYQVVW--------------LKNIGFIYDR--------- 93 (266)
T ss_dssp TCEEEEEETTTCCEEEEEECCT--TCCEEEEEEETTE----EEEEET--------------TCSEEEEEET---------
T ss_pred CCEEEEEECCCCCEEEEEecCC--CcceEEEEEeCCE----EEEEEe--------------cCCEEEEEEC---------
Confidence 4789999999998765411222 2222345666776 766664 2337999997
Q ss_pred hhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeee
Q 003363 352 LELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (826)
Q Consensus 352 ~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 430 (826)
++.+ ..++..+ ......+++||++|+ .++. ...|+++|..+.+... .+++-
T Consensus 94 --------~t~~v~~~i~~g--~~~g~glt~Dg~~l~-vs~g----------s~~l~viD~~t~~v~~-------~I~Vg 145 (266)
T 2iwa_A 94 --------RTLSNIKNFTHQ--MKDGWGLATDGKILY-GSDG----------TSILYEIDPHTFKLIK-------KHNVK 145 (266)
T ss_dssp --------TTTEEEEEEECC--SSSCCEEEECSSSEE-EECS----------SSEEEEECTTTCCEEE-------EEECE
T ss_pred --------CCCcEEEEEECC--CCCeEEEEECCCEEE-EECC----------CCeEEEEECCCCcEEE-------EEEEC
Confidence 5543 3344322 122345889999876 4532 2679999987754321 11111
Q ss_pred eccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC--------------CCeeeEEEe
Q 003363 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE--------------SNFSWSLLT 496 (826)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~--------------~~~~~~~~s 496 (826)
..+. .+ ..+..+.|. || .||.. .+ ....|.+||+++|++.....-. .......++
T Consensus 146 ~~~~--p~-----~~~nele~~-dg-~lyvn-~~-~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~ 214 (266)
T 2iwa_A 146 YNGH--RV-----IRLNELEYI-NG-EVWAN-IW-QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWD 214 (266)
T ss_dssp ETTE--EC-----CCEEEEEEE-TT-EEEEE-ET-TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEE
T ss_pred CCCc--cc-----ccceeEEEE-CC-EEEEe-cC-CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEc
Confidence 0000 00 012245566 67 56644 33 3457999999999876443211 122445789
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 497 LDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 497 ~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
++++.+++..... +.++.+++...
T Consensus 215 ~~~~~lfVTgk~~---~~v~~i~l~~~ 238 (266)
T 2iwa_A 215 QENKRIFVTGKLW---PKLFEIKLHLV 238 (266)
T ss_dssp TTTTEEEEEETTC---SEEEEEEEEEC
T ss_pred CCCCEEEEECCCC---CeEEEEEEecc
Confidence 9999888777555 45888887543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00016 Score=78.27 Aligned_cols=177 Identities=11% Similarity=0.013 Sum_probs=107.5
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
..|++++++++..+.+. ..+......+++.+.+.. |+++-. ....|+++++
T Consensus 138 ~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~g~----lY~~d~--------------~~~~I~~~~~---------- 188 (386)
T 3v65_B 138 DRILRANLNGSNVEEVV-STGLESPGGLAVDWVHDK----LYWTDS--------------GTSRIEVANL---------- 188 (386)
T ss_dssp TEEEEEETTSCCEEEEE-CSSCSCCCCEEEETTTTE----EEEEET--------------TTTEEEECBT----------
T ss_pred CcEEEEecCCCCcEEEE-eCCCCCccEEEEEeCCCe----EEEEcC--------------CCCeEEEEeC----------
Confidence 67999999988766652 122234567888888887 877652 2236888887
Q ss_pred hhhcCCCCCCcceecC-CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeee
Q 003363 353 ELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 431 (826)
Q Consensus 353 ~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 431 (826)
++...+.+. .........++.|++.+|+|..... ...|+++++++...+.+....
T Consensus 189 -------dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~---------~~~I~r~~~dG~~~~~~~~~~-------- 244 (386)
T 3v65_B 189 -------DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN---------TPRIEASSMDGSGRRIIADTH-------- 244 (386)
T ss_dssp -------TSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSS---------SCEEEEEETTSCSCEEEECSS--------
T ss_pred -------CCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCC---------CCEEEEEeCCCCCcEEEEECC--------
Confidence 444444443 2334456678899998888775431 367999998764432211100
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCC
Q 003363 432 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVD 511 (826)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~ 511 (826)
-. ....++|+++++.||++- .....|+++|++++..+.+...... .-..++.+++.+|++...
T Consensus 245 ----~~-------~PnGlavd~~~~~lY~aD--~~~~~I~~~d~dG~~~~~~~~~~~~-~P~giav~~~~ly~td~~--- 307 (386)
T 3v65_B 245 ----LF-------WPNGLTIDYAGRRMYWVD--AKHHVIERANLDGSHRKAVISQGLP-HPFAITVFEDSLYWTDWH--- 307 (386)
T ss_dssp ----CS-------CEEEEEEEGGGTEEEEEE--TTTTEEEEECTTSCSCEEEECSSCS-SEEEEEEETTEEEEEETT---
T ss_pred ----CC-------CeeeEEEeCCCCEEEEEE--CCCCEEEEEeCCCCeeEEEEECCCC-CceEEEEECCEEEEeeCC---
Confidence 00 123678998888898873 3445799999987666655433221 112344466777666532
Q ss_pred CCeEEEEe
Q 003363 512 VPQVKYGY 519 (826)
Q Consensus 512 p~~l~~~~ 519 (826)
...|..++
T Consensus 308 ~~~V~~~~ 315 (386)
T 3v65_B 308 TKSINSAN 315 (386)
T ss_dssp TTEEEEEE
T ss_pred CCeEEEEE
Confidence 23466665
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00036 Score=74.30 Aligned_cols=177 Identities=11% Similarity=0.013 Sum_probs=107.4
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
..|++++++++..+.+. ..+-.....+++.+.+.. |+++.. ....|+++++
T Consensus 95 ~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~g~----ly~~d~--------------~~~~I~~~~~---------- 145 (349)
T 3v64_C 95 DRILRANLNGSNVEEVV-STGLESPGGLAVDWVHDK----LYWTDS--------------GTSRIEVANL---------- 145 (349)
T ss_dssp TEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTTTE----EEEEET--------------TTTEEEEEET----------
T ss_pred CceEEEecCCCCceEEE-eCCCCCccEEEEecCCCe----EEEEcC--------------CCCeEEEEcC----------
Confidence 67999999988766651 122234567888888887 877652 2237889997
Q ss_pred hhhcCCCCCCcceecC-CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeee
Q 003363 353 ELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 431 (826)
Q Consensus 353 ~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 431 (826)
++...+.+. .........++.|++..|+|..... ...|+++++++...+.+....
T Consensus 146 -------dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~---------~~~I~r~~~dG~~~~~~~~~~-------- 201 (349)
T 3v64_C 146 -------DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN---------TPRIEASSMDGSGRRIIADTH-------- 201 (349)
T ss_dssp -------TSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS---------SCEEEEEETTSCSCEESCCSS--------
T ss_pred -------CCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC---------CCEEEEEeCCCCCcEEEEECC--------
Confidence 444444443 3334456778999888888776431 267999998775433221100
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCC
Q 003363 432 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVD 511 (826)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~ 511 (826)
-. ....++|+++++.||++- .+...|+++|++++..+.+...... .-..++.+++.++++-...
T Consensus 202 ----~~-------~PnGla~d~~~~~lY~aD--~~~~~I~~~~~dG~~~~~~~~~~~~-~P~giav~~~~ly~td~~~-- 265 (349)
T 3v64_C 202 ----LF-------WPNGLTIDYAGRRMYWVD--AKHHVIERANLDGSHRKAVISQGLP-HPFAITVFEDSLYWTDWHT-- 265 (349)
T ss_dssp ----CS-------CEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEECSSCS-SEEEEEEETTEEEEEETTT--
T ss_pred ----CC-------CcceEEEeCCCCEEEEEE--CCCCEEEEEeCCCCceEEEEeCCCC-CceEEEEECCEEEEecCCC--
Confidence 00 123678999888898873 3445899999987666655433221 1123344566666654332
Q ss_pred CCeEEEEe
Q 003363 512 VPQVKYGY 519 (826)
Q Consensus 512 p~~l~~~~ 519 (826)
..|..++
T Consensus 266 -~~V~~~~ 272 (349)
T 3v64_C 266 -KSINSAN 272 (349)
T ss_dssp -TEEEEEE
T ss_pred -CeEEEEE
Confidence 3466555
|
| >2dsn_A Thermostable lipase; T1 lipase, hydrolase; 1.50A {Geobacillus zalihae} PDB: 3umj_A 2z5g_A 1ji3_A 3auk_A 2w22_A* 1ku0_A | Back alignment and structure |
|---|
Probab=98.19 E-value=6.1e-06 Score=88.32 Aligned_cols=103 Identities=15% Similarity=0.168 Sum_probs=65.1
Q ss_pred CCcEEEEEcCCCCCCCC-----ccch----HHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHH
Q 003363 591 CDPLIVVLHGGPHSVSL-----SSYS----KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDH 661 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~-----~~~~----~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~ 661 (826)
..|.||++||..+.... ..|. ..++.|+++||.|+++|++| +|.... ...++...++.
T Consensus 5 ~~~pVVLvHG~~g~~~~~~~~~~yW~~~~~~la~~L~~~G~~Via~Dl~g---~G~s~~----------~a~~l~~~i~~ 71 (387)
T 2dsn_A 5 NDAPIVLLHGFTGWGREEMFGFKYWGGVRGDIEQWLNDNGYRTYTLAVGP---LSSNWD----------RACEAYAQLVG 71 (387)
T ss_dssp CCCCEEEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEEECCCS---SBCHHH----------HHHHHHHHHHC
T ss_pred CCCcEEEECCCCCCCcccccccchhhhhhHHHHHHHHHCCCEEEEecCCC---CCCccc----------cHHHHHHHHHh
Confidence 34558999996543211 1243 34588999999999999998 443321 11222222221
Q ss_pred --------HHHc---------------CCCCCCcEEEEEecchHHHHHHHHHh-------------------CC------
Q 003363 662 --------VIDM---------------GLANPSKVTVVGGSHGGFLTTHLIGQ-------------------AP------ 693 (826)
Q Consensus 662 --------l~~~---------------~~~d~~rv~l~G~S~GG~~a~~~a~~-------------------~p------ 693 (826)
+.+. .....+++.|+||||||.++..++.+ +|
T Consensus 72 ~~vDy~~~~a~~~~~~~~~~~l~~ll~~~~~~~kv~LVGHSmGG~va~~~a~~l~~~~~~e~~~~~~~~~~~~P~~~g~~ 151 (387)
T 2dsn_A 72 GTVDYGAAHAAKHGHARFGRTYPGLLPELKRGGRIHIIAHSQGGQTARMLVSLLENGSQEEREYAKAHNVSLSPLFEGGH 151 (387)
T ss_dssp EEEECCHHHHHHHTSCSEEEEECCSCGGGGTTCCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHTCCCCGGGTCCC
T ss_pred hhhhhhhhhhhhccchhhhhhHHHHHHHhcCCCceEEEEECHHHHHHHHHHHHhccccccccccccccccccCccccccc
Confidence 1100 00235789999999999999998872 35
Q ss_pred CceeEEEecCCcc
Q 003363 694 DKFVAAAARNPLC 706 (826)
Q Consensus 694 ~~~~a~v~~~p~~ 706 (826)
++++.+|++++..
T Consensus 152 ~~V~sLV~i~tP~ 164 (387)
T 2dsn_A 152 HFVLSVTTIATPH 164 (387)
T ss_dssp CCEEEEEEESCCT
T ss_pred cceeEEEEECCCC
Confidence 7899999887643
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00022 Score=71.97 Aligned_cols=205 Identities=9% Similarity=0.002 Sum_probs=116.6
Q ss_pred EEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 003363 157 SAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (826)
Q Consensus 157 ~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~ 235 (826)
....++||| + +|++....+...+..++ ..++..+.+.+.... .+..+.++|++|+....
T Consensus 24 ~Gl~~~~dg-~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~----------fgeGi~~~g~~lyv~t~-------- 83 (266)
T 2iwa_A 24 QGLVYAEND-T-LFESTGLYGRSSVRQVALQTGKVENIHKMDDSY----------FGEGLTLLNEKLYQVVW-------- 83 (266)
T ss_dssp EEEEECSTT-E-EEEEECSTTTCEEEEEETTTCCEEEEEECCTTC----------CEEEEEEETTEEEEEET--------
T ss_pred ccEEEeCCC-e-EEEECCCCCCCEEEEEECCCCCEEEEEecCCCc----------ceEEEEEeCCEEEEEEe--------
Confidence 467889996 4 45555322556788888 677777777665443 22234455777766533
Q ss_pred ccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEE
Q 003363 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 315 (826)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf 315 (826)
....++++|.++.++..- ++.. .......++||++ ++.
T Consensus 84 -----------------------------------~~~~v~viD~~t~~v~~~--i~~g-~~~g~glt~Dg~~----l~v 121 (266)
T 2iwa_A 84 -----------------------------------LKNIGFIYDRRTLSNIKN--FTHQ-MKDGWGLATDGKI----LYG 121 (266)
T ss_dssp -----------------------------------TCSEEEEEETTTTEEEEE--EECC-SSSCCEEEECSSS----EEE
T ss_pred -----------------------------------cCCEEEEEECCCCcEEEE--EECC-CCCeEEEEECCCE----EEE
Confidence 236899999998876543 2211 1223558899998 764
Q ss_pred EeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCC--c---cccCceecCCCCEEEEE
Q 003363 316 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESI--S---SAFFPRFSPDGKFLVFL 389 (826)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~--~---~~~~p~~SpDG~~l~f~ 389 (826)
++ ....|+.+|. ++.+ ...+.-+. . ......|. || +| |.
T Consensus 122 -s~--------------gs~~l~viD~-----------------~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~l-yv 166 (266)
T 2iwa_A 122 -SD--------------GTSILYEIDP-----------------HTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EV-WA 166 (266)
T ss_dssp -EC--------------SSSEEEEECT-----------------TTCCEEEEEECEETTEECCCEEEEEEE-TT-EE-EE
T ss_pred -EC--------------CCCeEEEEEC-----------------CCCcEEEEEEECCCCcccccceeEEEE-CC-EE-EE
Confidence 42 2237999997 4443 33333221 1 12344566 77 44 55
Q ss_pred eccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCC---CCCcccccCCCCCCccccCCCEEEEEEEeCC
Q 003363 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEG---DCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 466 (826)
Q Consensus 390 s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~ 466 (826)
... ...+|.++|..+++... .+++-....+ ...+ ....+..++|+||++++|++. ..
T Consensus 167 n~~---------~~~~V~vID~~tg~V~~-------~I~~~g~~~~~~~~~~~--~~~v~nGIa~~~~~~~lfVTg--k~ 226 (266)
T 2iwa_A 167 NIW---------QTDCIARISAKDGTLLG-------WILLPNLRKKLIDEGFR--DIDVLNGIAWDQENKRIFVTG--KL 226 (266)
T ss_dssp EET---------TSSEEEEEETTTCCEEE-------EEECHHHHHHHHHTTCT--TCCCEEEEEEETTTTEEEEEE--TT
T ss_pred ecC---------CCCeEEEEECCCCcEEE-------EEECCCccccccccccc--ccCceEEEEEcCCCCEEEEEC--CC
Confidence 443 23689999998876421 1111000000 0000 001234778999999888764 44
Q ss_pred eEEEEEEECCCC
Q 003363 467 SQVIISVNVSSG 478 (826)
Q Consensus 467 ~~~l~~vdl~tg 478 (826)
...|+.+++...
T Consensus 227 ~~~v~~i~l~~~ 238 (266)
T 2iwa_A 227 WPKLFEIKLHLV 238 (266)
T ss_dssp CSEEEEEEEEEC
T ss_pred CCeEEEEEEecc
Confidence 567888887543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00049 Score=71.76 Aligned_cols=228 Identities=13% Similarity=0.113 Sum_probs=119.2
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~ 235 (826)
...++|+|+|+ |+++ +. ....++.++..+............ .++.++|||+ | |++....
T Consensus 34 pegia~~~~g~-lyv~-d~--~~~~I~~~d~~g~~~~~~~~~~~p----------~gia~~~dG~-l-~vad~~~----- 92 (306)
T 2p4o_A 34 LENLASAPDGT-IFVT-NH--EVGEIVSITPDGNQQIHATVEGKV----------SGLAFTSNGD-L-VATGWNA----- 92 (306)
T ss_dssp EEEEEECTTSC-EEEE-ET--TTTEEEEECTTCCEEEEEECSSEE----------EEEEECTTSC-E-EEEEECT-----
T ss_pred cceEEECCCCC-EEEE-eC--CCCeEEEECCCCceEEEEeCCCCc----------eeEEEcCCCc-E-EEEeccC-----
Confidence 55789999997 5444 32 223577777555555544443333 6889999998 4 4443210
Q ss_pred ccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEE
Q 003363 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 315 (826)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf 315 (826)
....|+.+|..+|+++.+...+.......++..+++. +++
T Consensus 93 -----------------------------------~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~-----~~v 132 (306)
T 2p4o_A 93 -----------------------------------DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ-----YLT 132 (306)
T ss_dssp -----------------------------------TSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE-----EEE
T ss_pred -----------------------------------CcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCc-----EEE
Confidence 1235888888888877653222211222334334332 433
Q ss_pred EeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCC--cce---------ecCCCCccccCceecCCCC
Q 003363 316 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PVV---------NLTESISSAFFPRFSPDGK 384 (826)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~~---------~Lt~~~~~~~~p~~SpDG~ 384 (826)
+.. ....||++|. .++ ... ........... .+|||+
T Consensus 133 -~d~-------------~~g~i~~~d~-----------------~~~~~~v~~~~~~~~~~~~~~~~~~png--is~dg~ 179 (306)
T 2p4o_A 133 -ADS-------------YRGAIWLIDV-----------------VQPSGSIWLEHPMLARSNSESVFPAANG--LKRFGN 179 (306)
T ss_dssp -EET-------------TTTEEEEEET-----------------TTTEEEEEEECGGGSCSSTTCCSCSEEE--EEEETT
T ss_pred -EEC-------------CCCeEEEEeC-----------------CCCcEeEEEECCccccccccCCCCcCCC--cCcCCC
Confidence 321 2337888886 222 111 00011111122 289999
Q ss_pred EEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEe
Q 003363 385 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 464 (826)
Q Consensus 385 ~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~ 464 (826)
+|++.... ..+|+++++++.+.. . ........ .....+++++||+ ||++. .
T Consensus 180 ~lyv~d~~----------~~~I~~~~~~~~g~~--~-~~~~~~~~--------------~~P~gi~vd~dG~-l~va~-~ 230 (306)
T 2p4o_A 180 FLYVSNTE----------KMLLLRIPVDSTDKP--G-EPEIFVEQ--------------TNIDDFAFDVEGN-LYGAT-H 230 (306)
T ss_dssp EEEEEETT----------TTEEEEEEBCTTSCB--C-CCEEEEES--------------CCCSSEEEBTTCC-EEEEC-B
T ss_pred EEEEEeCC----------CCEEEEEEeCCCCCC--C-ccEEEecc--------------CCCCCeEECCCCC-EEEEe-C
Confidence 87666543 367999998763221 0 00001110 1234678899996 65543 2
Q ss_pred CCeEEEEEEECCCCcEEEe---cCCCCCeeeEEEe---ecCCEEEEEEeC
Q 003363 465 GSSQVIISVNVSSGELLRI---TPAESNFSWSLLT---LDGDNIIAVSSS 508 (826)
Q Consensus 465 ~~~~~l~~vdl~tg~~~~l---t~~~~~~~~~~~s---~dg~~l~~~~s~ 508 (826)
+...|.++|.+ |+...+ ...........|. ++++.||+....
T Consensus 231 -~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 231 -IYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp -TTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred -CCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 23457778875 665443 2221223334565 677777766554
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00015 Score=80.17 Aligned_cols=264 Identities=15% Similarity=0.121 Sum_probs=140.0
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCcc
Q 003363 160 VPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 237 (826)
Q Consensus 160 ~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~ 237 (826)
.+++||++|+.....+ .+.+|+ .++..+.+ . +..+.| ..+.|+ ++.|+..+.+.... .|+
T Consensus 124 ~~~~~g~~l~sg~~dg-----~i~vwd~~~~~~~~~~--~-~h~~~v------~~~~~~--~~~l~s~~~dg~i~--vwd 185 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDN-----TLKVWSAVTGKCLRTL--V-GHTGGV------WSSQMR--DNIIISGSTDRTLK--VWN 185 (445)
T ss_dssp EEEEETTEEEEEETTS-----CEEEEETTTCCEEEEC--C-CCSSCE------EEEEEE--TTEEEEEETTSCEE--EEE
T ss_pred EEEEcCCEEEEEECCC-----cEEEEECCCCcEEEEE--c-CCCCCE------EEEEec--CCEEEEEeCCCeEE--EEE
Confidence 5777899998876543 466773 33333222 1 222333 677776 55777777665433 232
Q ss_pred CCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEe
Q 003363 238 LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 317 (826)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~ 317 (826)
............+........|.++ ..+++..+..|.+||+.+++..... ......+..+.| ||+. |+..+
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~--~~~~----l~~~~ 256 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLHEK--RVVSGSRDATLRVWDIETGQCLHVL-MGHVAAVRCVQY--DGRR----VVSGA 256 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEETT--EEEEEETTSEEEEEESSSCCEEEEE-ECCSSCEEEEEE--CSSC----EEEEE
T ss_pred CCcCcEEEEECCCCCcEEEEEecCC--EEEEEeCCCEEEEEECCCCcEEEEE-cCCcccEEEEEE--CCCE----EEEEc
Confidence 2111111111223333333444332 3455566789999999988755431 222334555666 8887 77665
Q ss_pred ecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEeccCCCC
Q 003363 318 WSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVD 396 (826)
Q Consensus 318 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~ 396 (826)
.+..|..+|+ .+++ ...+..+...+....| ||++|+..+.+
T Consensus 257 ---------------~dg~i~iwd~-----------------~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d---- 298 (445)
T 2ovr_B 257 ---------------YDFMVKVWDP-----------------ETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLD---- 298 (445)
T ss_dssp ---------------TTSCEEEEEG-----------------GGTEEEEEECCCSSCEEEEEE--CSSEEEEEETT----
T ss_pred ---------------CCCEEEEEEC-----------------CCCcEeEEecCCCCceEEEEE--CCCEEEEEeCC----
Confidence 3347888887 3333 4455555566666677 88888766654
Q ss_pred CCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECC
Q 003363 397 SGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 476 (826)
Q Consensus 397 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~ 476 (826)
..|.+||+.+++......... .. ...++++++.| ++...++ .|..+|+.
T Consensus 299 -------~~i~i~d~~~~~~~~~~~~~~-------------------~~--v~~~~~~~~~l-~~~~~dg--~i~vwd~~ 347 (445)
T 2ovr_B 299 -------TSIRVWDVETGNCIHTLTGHQ-------------------SL--TSGMELKDNIL-VSGNADS--TVKIWDIK 347 (445)
T ss_dssp -------SCEEEEETTTCCEEEEECCCC-------------------SC--EEEEEEETTEE-EEEETTS--CEEEEETT
T ss_pred -------CeEEEEECCCCCEEEEEcCCc-------------------cc--EEEEEEeCCEE-EEEeCCC--eEEEEECC
Confidence 358999988765321110000 01 11344567655 4444444 45556887
Q ss_pred CCcEEEecCCC--CCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 477 SGELLRITPAE--SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 477 tg~~~~lt~~~--~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
+++........ .......++.+++.++... .. ..|.+.++.++
T Consensus 348 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~-~d---g~v~iwd~~~~ 392 (445)
T 2ovr_B 348 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITSS-DD---GTVKLWDLKTG 392 (445)
T ss_dssp TCCEEEEECSTTSCSSCEEEEEECSSEEEEEE-TT---SEEEEEETTTC
T ss_pred CCcEEEEEccCCCCCCCEEEEEECCCEEEEEe-CC---CeEEEEECCCC
Confidence 77765443321 1122234455665544433 22 24666665443
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00033 Score=76.45 Aligned_cols=159 Identities=11% Similarity=0.165 Sum_probs=89.0
Q ss_pred EEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEE-ecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCc
Q 003363 159 VVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEF-HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 236 (826)
Q Consensus 159 ~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~-~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~ 236 (826)
++|+|+|+.|++..... ...++.+.. ++...+.. .+..... ....+++++|++..|++. ..
T Consensus 176 ia~~~~g~~l~~~d~~~--~~~I~~~d~~~~~~~~~~g~~~~~~~------~~p~~iav~p~~g~lyv~-d~-------- 238 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEG--THTVYVYMKASGWAPTRIGQLGSTFS------GKIGAVALDETEEWLYFV-DS-------- 238 (409)
T ss_dssp CEECTTSSEEEEEBSST--TCEEEEEEGGGTTCEEEEEECCTTSC------SCCCBCEECTTSSEEEEE-CT--------
T ss_pred eeEecCCCcEEEEecCC--CceEEEEEcCCCceeEEeeeccchhc------CCcEEEEEeCCCCeEEEE-EC--------
Confidence 89999999886654422 226777773 33322222 1111010 112688999976677773 21
Q ss_pred cCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC--CCCCC--ccc-eEEEeeCCCCCcc
Q 003363 237 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG--IPKSL--SVG-QVVWAPLNEGLHQ 311 (826)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~--~~~~~--~~~-~~~wSPDg~~~~~ 311 (826)
...|+++|.+++....+.+ ..... ... .++|+|++..
T Consensus 239 -----------------------------------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~--- 280 (409)
T 3hrp_A 239 -----------------------------------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN--- 280 (409)
T ss_dssp -----------------------------------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE---
T ss_pred -----------------------------------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE---
Confidence 2479999998887655411 11111 223 8999998776
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC---------------CccccC
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES---------------ISSAFF 376 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~---------------~~~~~~ 376 (826)
|+++. . ....|++++. ++. ...+... ......
T Consensus 281 -lyv~d-~-------------~~~~I~~~~~-----------------~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~g 327 (409)
T 3hrp_A 281 -FYMSD-Q-------------NLSSVYKITP-----------------DGE-CEWFCGSATQKTVQDGLREEALFAQPNG 327 (409)
T ss_dssp -EEEEE-T-------------TTTEEEEECT-----------------TCC-EEEEEECTTCCSCBCEEGGGCBCSSEEE
T ss_pred -EEEEe-C-------------CCCEEEEEec-----------------CCC-EEEEEeCCCCCCcCCCcccccEeCCCeE
Confidence 76654 1 2236778875 221 2222111 122456
Q ss_pred ceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 377 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 377 p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
.+++|||+ |++..... ...|+++++.++.
T Consensus 328 ia~d~dG~-lyvad~~~---------~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 328 MTVDEDGN-FYIVDGFK---------GYCLRKLDILDGY 356 (409)
T ss_dssp EEECTTCC-EEEEETTT---------TCEEEEEETTTTE
T ss_pred EEEeCCCC-EEEEeCCC---------CCEEEEEECCCCE
Confidence 78999998 54443202 3679999976644
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00015 Score=77.46 Aligned_cols=82 Identities=9% Similarity=-0.035 Sum_probs=50.2
Q ss_pred ceecCCCCEEEEEec-c-CCCCCCCCcccceEEEEeCCCCCCCC-cccceeeeeeeeeccCCCCCcccccCCCCCCcccc
Q 003363 377 PRFSPDGKFLVFLSA-K-SSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 453 (826)
Q Consensus 377 p~~SpDG~~l~f~s~-~-~~~~~g~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~ 453 (826)
..++|||++|+.... . .... + ....+.++|+.+.+... +..+. ....+.|++
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~-~---~~~~~~ViD~~t~~vv~~i~vg~---------------------~p~gi~~s~ 323 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCL-A---AAENTSSVTASVGQTSGPISNGH---------------------DSDAIIAAQ 323 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTT-S---CEEEEEEEESSSCCEEECCEEEE---------------------EECEEEECC
T ss_pred eEEcCCCCEEEEEeccccCccc-c---cCCCEEEEECCCCeEEEEEECCC---------------------CcceEEECC
Confidence 579999999766543 1 1000 0 01345699998865421 11111 123678999
Q ss_pred CCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003363 454 DGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (826)
Q Consensus 454 Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt 484 (826)
||++++++.. .+...|..+|+.++++..-.
T Consensus 324 Dg~~l~va~~-~~~~~VsVID~~t~kvv~~I 353 (368)
T 1mda_H 324 DGASDNYANS-AGTEVLDIYDAASDQDQSSV 353 (368)
T ss_dssp SSSCEEEEEE-TTTTEEEEEESSSCEEEEEC
T ss_pred CCCEEEEEcc-CCCCeEEEEECCCCcEEEEE
Confidence 9998877654 23456888999998876543
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00016 Score=80.63 Aligned_cols=119 Identities=11% Similarity=0.059 Sum_probs=69.3
Q ss_pred cEEEEeCC-----CCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceee-c-CCCCeEEEEee
Q 003363 156 ASAVVPSP-----SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISW-N-SDETLIAYVAE 227 (826)
Q Consensus 156 ~~~~~~SP-----dG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~w-S-PDg~~ia~~~~ 227 (826)
.-.|..|. ||++|.. .+. ....+-+|+ +..+..+++.++.+. + ..++++ + ||+++|+...+
T Consensus 87 ~hh~~~s~t~g~~DG~~lfV-nd~--~~~rVavIdl~t~~~~~ii~ip~g~-~-------phg~~~~~~p~~~~v~~~~~ 155 (595)
T 1fwx_A 87 LHHVHMSFTEGKYDGRFLFM-NDK--ANTRVARVRCDVMKCDAILEIPNAK-G-------IHGLRPQKWPRSNYVFCNGE 155 (595)
T ss_dssp BCCEEEEEETTEEEEEEEEE-EET--TTTEEEEEETTTTEEEEEEECSSCC-S-------EEEEEECCSSBCSEEEEEEC
T ss_pred CCccccCCCCCCcCCCEEEE-EcC--CCCEEEEEECCCceEeeEEeCCCCC-C-------CcceeeeecCCCcEEEEecc
Confidence 34477777 9988855 332 456788888 666777777765432 0 146776 6 99999855544
Q ss_pred cCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCC
Q 003363 228 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 307 (826)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~ 307 (826)
...+-.+ .++.. +.++ .....+-++|.++.++..- ++-......+..||||+
T Consensus 156 ~~~p~~~--------dg~~l-----------~~~~-------~~~~~vtvID~~t~~v~~q--I~Vgg~pd~~~~spdGk 207 (595)
T 1fwx_A 156 DETPLVN--------DGTNM-----------EDVA-------NYVNVFTAVDADKWEVAWQ--VLVSGNLDNCDADYEGK 207 (595)
T ss_dssp SCEESSC--------SSSST-----------TCGG-------GEEEEEEEEETTTTEEEEE--EEESSCCCCEEECSSSS
T ss_pred cccccCC--------CCccc-----------cccc-------ccCceEEEEECCCCeEEEE--EEeCCCccceEECCCCC
Confidence 3321100 00000 0011 1346788999998876533 12111456788999999
Q ss_pred CCccEEEEEe
Q 003363 308 GLHQYLVFVG 317 (826)
Q Consensus 308 ~~~~~lvf~~ 317 (826)
+ ++.++
T Consensus 208 ~----~~vt~ 213 (595)
T 1fwx_A 208 W----AFSTS 213 (595)
T ss_dssp E----EEEEE
T ss_pred E----EEEEe
Confidence 6 55544
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00048 Score=74.88 Aligned_cols=180 Identities=8% Similarity=-0.033 Sum_probs=107.0
Q ss_pred ceEEEEEccC----CceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccch
Q 003363 273 PSLFVININS----GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 348 (826)
Q Consensus 273 ~~l~v~d~~~----g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 348 (826)
..|+.+++++ +..+.+. ...-.....+++.+.++. |+++-. ....|+++++
T Consensus 134 ~~I~~~~~~g~~~~~~~~~~~-~~~~~~p~glavD~~~~~----lY~~d~--------------~~~~I~~~~~------ 188 (400)
T 3p5b_L 134 RMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIHSN----IYWTDS--------------VLGTVSVADT------ 188 (400)
T ss_dssp TEEEEEEC------CCCEEEE-CSSCSCEEEEEEETTTTE----EEEEET--------------TTTEEEEECT------
T ss_pred CeEEEEEcccCCCCCcceEEE-eCCCCCcccEEEEecCCc----eEEEEC--------------CCCeEEEEeC------
Confidence 5788888876 2333331 112234567788887776 777642 2236888887
Q ss_pred hhhhhhhcCCCCCCcceecCC-CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeee
Q 003363 349 ASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 427 (826)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 427 (826)
++...+.+.. ........++.|.+.+|+|..... ...|+++++++...+.+....
T Consensus 189 -----------~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~---------~~~I~~~~~dG~~~~~~~~~~---- 244 (400)
T 3p5b_L 189 -----------KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT---------PAKIKKGGLNGVDIYSLVTEN---- 244 (400)
T ss_dssp -----------TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSS---------SCCEEEEETTSCSCEEEECSS----
T ss_pred -----------CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCC---------CCEEEEEeCCCCccEEEEECC----
Confidence 5555444443 333456678999888888776432 246999998774432221100
Q ss_pred eeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCC-eeeEEEeecCCEEEEEE
Q 003363 428 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESN-FSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 428 ~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~-~~~~~~s~dg~~l~~~~ 506 (826)
+ .....++++++++.||++- .....|+++|++++..+.+...... ..-..++.+++.+|++.
T Consensus 245 ----------l-----~~P~glavd~~~~~lY~aD--~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd 307 (400)
T 3p5b_L 245 ----------I-----QWPNGITLDLLSGRLYWVD--SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 307 (400)
T ss_dssp ----------C-----SCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEE
T ss_pred ----------C-----CceEEEEEEeCCCEEEEEE--CCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEec
Confidence 0 0123678898888898863 3456799999988777766543221 12235566788877776
Q ss_pred eCCCCCCeEEEEeec
Q 003363 507 SSPVDVPQVKYGYFV 521 (826)
Q Consensus 507 s~~~~p~~l~~~~~~ 521 (826)
... ..|+.++..
T Consensus 308 ~~~---~~V~~~~~~ 319 (400)
T 3p5b_L 308 IIN---EAIFSANRL 319 (400)
T ss_dssp SSS---CSEEEEESS
T ss_pred CCC---CeEEEEEcC
Confidence 433 347766643
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0011 Score=69.47 Aligned_cols=160 Identities=9% Similarity=0.022 Sum_probs=101.9
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCce-eEEEecC-CCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQL-EKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~-~~~~~~~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
......|.+.++.|+++... ...++.+. +++.. ..+.... ... .++++.+.+..|++.-.
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~---~~~I~r~~~~g~~~~~~~~~~~l~~p----------~glavd~~~g~ly~~d~---- 98 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVS---EEAIKRTEFNKTESVQNVVVSGLLSP----------DGLACDWLGEKLYWTDS---- 98 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETT---TTEEEEEETTSSSCCCEEEEECCSCC----------CEEEEETTTTEEEEEET----
T ss_pred ccEEEEEEeCCCEEEEEECC---CCcEEEEEccCCCceEEEEcCCCCCc----------cEEEEEcCCCeEEEEEC----
Confidence 45678899988888776432 23566666 33321 2222211 122 57888888887877521
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
....|.++++++...+.+. ...-.....++..|++..
T Consensus 99 ---------------------------------------~~~~I~~~~~dG~~~~~l~-~~~~~~P~giavdp~~g~--- 135 (318)
T 3sov_A 99 ---------------------------------------ETNRIEVSNLDGSLRKVLF-WQELDQPRAIALDPSSGF--- 135 (318)
T ss_dssp ---------------------------------------TTTEEEEEETTSCSCEEEE-CSSCSSEEEEEEEGGGTE---
T ss_pred ---------------------------------------CCCEEEEEECCCCcEEEEE-eCCCCCccEEEEeCCCCE---
Confidence 2367999999877666552 122235667889998776
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceec-CCCCccccCceecCCCCEEEEEe
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESISSAFFPRFSPDGKFLVFLS 390 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-t~~~~~~~~p~~SpDG~~l~f~s 390 (826)
|+++.+. ....|+++++ ++...+.+ ..........+|+|++++|+|..
T Consensus 136 -ly~td~~-------------~~~~I~r~~~-----------------dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD 184 (318)
T 3sov_A 136 -MYWTDWG-------------EVPKIERAGM-----------------DGSSRFIIINSEIYWPNGLTLDYEEQKLYWAD 184 (318)
T ss_dssp -EEEEECS-------------SSCEEEEEET-----------------TSCSCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred -EEEEecC-------------CCCEEEEEEc-----------------CCCCeEEEEECCCCCccEEEEeccCCEEEEEE
Confidence 7776532 1237999997 44444444 33344456789999999998887
Q ss_pred ccCCCCCCCCcccceEEEEeCCCCC
Q 003363 391 AKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 391 ~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
.. ...|+++|+++..
T Consensus 185 ~~----------~~~I~~~d~dG~~ 199 (318)
T 3sov_A 185 AK----------LNFIHKSNLDGTN 199 (318)
T ss_dssp TT----------TTEEEEEETTSCS
T ss_pred CC----------CCEEEEEcCCCCc
Confidence 54 3679999987644
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00049 Score=73.13 Aligned_cols=110 Identities=11% Similarity=-0.020 Sum_probs=56.9
Q ss_pred ccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccce-eeeeeeeeccCCCCCcccccCCCCCCccc
Q 003363 374 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI-VDVIPVVQCAEGDCFPGLYSSSILSNPWL 452 (826)
Q Consensus 374 ~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~f~g~~~~~~~~~~ws 452 (826)
....+|||||+.|++..... ..||.++........+.... ...+.... . ......++++
T Consensus 197 ~~gia~s~dg~~ly~~~~~~----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~g---~-------~g~pdgia~d 256 (343)
T 2qe8_A 197 VNGIVLDAENEWLYLSPMHS----------TSMYRIKSADLSNLQLTDAELGSKIERYS---E-------KPICDGISID 256 (343)
T ss_dssp EEEEEECTTSCEEEEEESSC----------SEEEEEEHHHHTCTTCCHHHHHTTCEEEE---E-------CCSCSCEEEC
T ss_pred cceeEeccCCCEEEEEeCCC----------CeEEEEEHHHhcCCCCChhhhhcceEecc---c-------CCCCceEEEC
Confidence 35688999999888776542 47888875310000000000 00000000 0 0023467889
Q ss_pred cCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC--CeeeEEEeecCCEEEEEEe
Q 003363 453 SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGDNIIAVSS 507 (826)
Q Consensus 453 ~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~--~~~~~~~s~dg~~l~~~~s 507 (826)
+||+ ||++. .....|+++|..+|+...+..... ......+++++ .++++.+
T Consensus 257 ~~G~-l~va~--~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g-~l~v~~~ 309 (343)
T 2qe8_A 257 KDHN-IYVGD--LAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG-YLYFDCN 309 (343)
T ss_dssp TTCC-EEEEE--GGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS-CEEEEEC
T ss_pred CCCC-EEEEc--cCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCC-cEEEEeC
Confidence 9986 66653 234468888985677766654321 12334555554 4555544
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00095 Score=71.03 Aligned_cols=161 Identities=9% Similarity=0.074 Sum_probs=105.6
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecC-CCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
.....++|.|.++.|+++... ...++.+. +++..+.+.... ... .++++.+.+..|+++-.
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~---~~~I~r~~~~g~~~~~~~~~~~~~p----------~glavd~~~g~ly~~d~---- 135 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVT---LDRILRANLNGSNVEEVVSTGLESP----------GGLAVDWVHDKLYWTDS---- 135 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETT---TTEEEEEETTSCSCEEEECSSCSCC----------CEEEEETTTTEEEEEET----
T ss_pred CceEEEEEeccccEEEEEecc---CCceEEEecCCCCceEEEeCCCCCc----------cEEEEecCCCeEEEEcC----
Confidence 346788999999888776432 23577777 444444443321 122 57889888888877522
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
....|+++++++...+.+. ...-.....+++.|++..
T Consensus 136 ---------------------------------------~~~~I~~~~~dG~~~~~l~-~~~l~~P~~iavdp~~g~--- 172 (349)
T 3v64_C 136 ---------------------------------------GTSRIEVANLDGAHRKVLL-WQSLEKPRAIALHPMEGT--- 172 (349)
T ss_dssp ---------------------------------------TTTEEEEEETTSCSCEEEE-CTTCSCEEEEEEETTTTE---
T ss_pred ---------------------------------------CCCeEEEEcCCCCceEEEE-eCCCCCcceEEEecCcCe---
Confidence 2357999999877665552 122235678899998887
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCC-CCccccCceecCCCCEEEEEe
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLS 390 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~l~f~s 390 (826)
|+++.+.. ...|+++++ ++...+.+.. ........+|+|++++|+|..
T Consensus 173 -ly~td~~~-------------~~~I~r~~~-----------------dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD 221 (349)
T 3v64_C 173 -IYWTDWGN-------------TPRIEASSM-----------------DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD 221 (349)
T ss_dssp -EEEEECSS-------------SCEEEEEET-----------------TSCSCEESCCSSCSCEEEEEEETTTTEEEEEE
T ss_pred -EEEeccCC-------------CCEEEEEeC-----------------CCCCcEEEEECCCCCcceEEEeCCCCEEEEEE
Confidence 87775322 237999997 5544444433 334466789999999998886
Q ss_pred ccCCCCCCCCcccceEEEEeCCCCC
Q 003363 391 AKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 391 ~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
.. ...|+++|+++..
T Consensus 222 ~~----------~~~I~~~~~dG~~ 236 (349)
T 3v64_C 222 AK----------HHVIERANLDGSH 236 (349)
T ss_dssp TT----------TTEEEEEETTSCS
T ss_pred CC----------CCEEEEEeCCCCc
Confidence 54 2579999987643
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00046 Score=74.64 Aligned_cols=160 Identities=9% Similarity=0.078 Sum_probs=104.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecC-CCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
.....++|.|.++.|+++... ...++.+.. ++..+.+.... ... .++++.+.+..|+++-.
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~---~~~I~r~~~~g~~~~~~~~~~~~~p----------~glavd~~~g~lY~~d~---- 178 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVT---LDRILRANLNGSNVEEVVSTGLESP----------GGLAVDWVHDKLYWTDS---- 178 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETT---TTEEEEEETTSCCEEEEECSSCSCC----------CCEEEETTTTEEEEEET----
T ss_pred CccEEEEEecCCCeEEEEeCC---CCcEEEEecCCCCcEEEEeCCCCCc----------cEEEEEeCCCeEEEEcC----
Confidence 357788999999888776432 235777773 43333433221 122 57889988888877522
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCC-CccceEEEeeCCCCCc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLH 310 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg~~~~ 310 (826)
....|+++++++...+.+ .... .....++..|++..
T Consensus 179 ---------------------------------------~~~~I~~~~~dg~~~~~l--~~~~l~~P~giavdp~~g~-- 215 (386)
T 3v65_B 179 ---------------------------------------GTSRIEVANLDGAHRKVL--LWQSLEKPRAIALHPMEGT-- 215 (386)
T ss_dssp ---------------------------------------TTTEEEECBTTSCSCEEE--ECSSCSCEEEEEEETTTTE--
T ss_pred ---------------------------------------CCCeEEEEeCCCCceEEe--ecCCCCCCcEEEEEcCCCe--
Confidence 225788888887765555 2322 35678899998887
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecC-CCCccccCceecCCCCEEEEE
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFL 389 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~l~f~ 389 (826)
|+++.+.. ...|+++++ ++...+.+. .........+|+|++++|+|.
T Consensus 216 --ly~td~~~-------------~~~I~r~~~-----------------dG~~~~~~~~~~~~~PnGlavd~~~~~lY~a 263 (386)
T 3v65_B 216 --IYWTDWGN-------------TPRIEASSM-----------------DGSGRRIIADTHLFWPNGLTIDYAGRRMYWV 263 (386)
T ss_dssp --EEEEECSS-------------SCEEEEEET-----------------TSCSCEEEECSSCSCEEEEEEEGGGTEEEEE
T ss_pred --EEEeccCC-------------CCEEEEEeC-----------------CCCCcEEEEECCCCCeeeEEEeCCCCEEEEE
Confidence 77765322 137999997 444444443 333446678999999999888
Q ss_pred eccCCCCCCCCcccceEEEEeCCCCC
Q 003363 390 SAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 390 s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
... ...|+++|+++..
T Consensus 264 D~~----------~~~I~~~d~dG~~ 279 (386)
T 3v65_B 264 DAK----------HHVIERANLDGSH 279 (386)
T ss_dssp ETT----------TTEEEEECTTSCS
T ss_pred ECC----------CCEEEEEeCCCCe
Confidence 654 2579999987643
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.01 E-value=5.1e-05 Score=84.57 Aligned_cols=103 Identities=12% Similarity=0.129 Sum_probs=58.0
Q ss_pred ceEEEEEccC--Cce-EeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchh
Q 003363 273 PSLFVININS--GEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 349 (826)
Q Consensus 273 ~~l~v~d~~~--g~~-~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 349 (826)
+.+-|+|..+ +++ ... ++.......+.+||||++ ++... . ....+..+|+.....
T Consensus 254 ~~V~VID~~~~~~~~~~~~--Ipvg~~PhGv~~sPDGk~----v~V~~-~-------------~s~~VsVid~~~~~~-- 311 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRY--IPIANNPHGCNMAPDKKH----LCVAG-K-------------LSPTVTVLDVTRFDA-- 311 (595)
T ss_dssp TTEEEEECSGGGCCSSEEE--EEEESSCCCEEECTTSSE----EEEEC-T-------------TSSBEEEEEGGGHHH--
T ss_pred CcEEEEeCcccCCceeEEE--EecCCCceEEEEcCCCCE----EEEeC-C-------------CCCeEEEEECccccc--
Confidence 4588999987 443 222 233345667899999996 55443 2 233789999831100
Q ss_pred hhhhhhcCCCCCC--cceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 350 SELELKESSSEDL--PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 350 ~~~~~~~~~~~~~--~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
. . ..+.+.. ...++.-+ ......+|+||| + +|++..- .+++.+||+++
T Consensus 312 --~-~-~~~l~~~~~v~~~v~vG-~gP~h~aF~~dG-~-aY~t~~l---------dsqV~kwdi~~ 361 (595)
T 1fwx_A 312 --V-F-YENADPRSAVVAEPELG-LGPLHTAFDGRG-N-AYTSLFL---------DSQVVKWNIED 361 (595)
T ss_dssp --H-H-HSCCCGGGGEEECCBCC-SCEEEEEECTTS-E-EEEEETT---------TTEEEEEEHHH
T ss_pred --c-c-ccccCcccceEEEcCCC-CCcceEEECCCC-e-EEEEEec---------CCcEEEEEhhH
Confidence 0 0 0001111 11222222 235667899999 4 6777653 26788888766
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=6.3e-05 Score=82.98 Aligned_cols=184 Identities=11% Similarity=0.098 Sum_probs=104.7
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCcc
Q 003363 160 VPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 237 (826)
Q Consensus 160 ~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~ 237 (826)
.+++||++|+.....+ .+.+|+ .++...... +..+.| ..++| |++.|+..+.++... .|+
T Consensus 138 ~~~~d~~~l~~g~~dg-----~i~iwd~~~~~~~~~~~---~h~~~v------~~l~~--~~~~l~sg~~dg~i~--vwd 199 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDN-----TIKIWDKNTLECKRILT---GHTGSV------LCLQY--DERVIITGSSDSTVR--VWD 199 (435)
T ss_dssp EEECCSSEEEEEESSS-----CEEEEESSSCCEEEEEC---CCSSCE------EEEEC--CSSEEEEEETTSCEE--EEE
T ss_pred EEEECCCEEEEEeCCC-----eEEEEeCCCCeEEEEEc---CCCCcE------EEEEE--CCCEEEEEcCCCeEE--EEE
Confidence 4556999998876543 456663 333333332 222222 56666 888888887776543 233
Q ss_pred CCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceE----eccCCCCCCccceEEEeeCCCCCccEE
Q 003363 238 LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ----AVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~----~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (826)
............+........|.+ +..+++.....|.+||+.+++.. .+ ......+..+.| |++. |
T Consensus 200 ~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~--~~~~----l 269 (435)
T 1p22_A 200 VNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVL--VGHRAAVNVVDF--DDKY----I 269 (435)
T ss_dssp SSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEE--CCCSSCEEEEEE--ETTE----E
T ss_pred CCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEe--cCCCCcEEEEEe--CCCE----E
Confidence 222221112222333333334432 24455556789999999887643 23 233345556666 7776 6
Q ss_pred EEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEecc
Q 003363 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 314 vf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
+..+ .+..|.++|+ .+++ ...+..+...+....| +|+.|+..+.+
T Consensus 270 ~s~~---------------~dg~i~vwd~-----------------~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~d 315 (435)
T 1p22_A 270 VSAS---------------GDRTIKVWNT-----------------STCEFVRTLNGHKRGIACLQY--RDRLVVSGSSD 315 (435)
T ss_dssp EEEE---------------TTSEEEEEET-----------------TTCCEEEEEECCSSCEEEEEE--ETTEEEEEETT
T ss_pred EEEe---------------CCCeEEEEEC-----------------CcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCC
Confidence 6655 3347889998 4443 4455555555655666 57777766544
Q ss_pred CCCCCCCCcccceEEEEeCCCCCC
Q 003363 393 SSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
..|.+||+.++..
T Consensus 316 -----------g~i~iwd~~~~~~ 328 (435)
T 1p22_A 316 -----------NTIRLWDIECGAC 328 (435)
T ss_dssp -----------SCEEEEETTTCCE
T ss_pred -----------CeEEEEECCCCCE
Confidence 3589999887653
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0051 Score=62.93 Aligned_cols=175 Identities=6% Similarity=-0.038 Sum_probs=93.8
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
..|+++|.++..++.+. ......+..++++|||+ |+++.. ....|+++|.
T Consensus 100 ~~i~~~d~~g~~~~~~~-~~~~~~~~~i~~~~~g~-----l~v~~~--------------~~~~i~~~~~---------- 149 (286)
T 1q7f_A 100 HQIQIYNQYGQFVRKFG-ATILQHPRGVTVDNKGR-----IIVVEC--------------KVMRVIIFDQ---------- 149 (286)
T ss_dssp CEEEEECTTSCEEEEEC-TTTCSCEEEEEECTTSC-----EEEEET--------------TTTEEEEECT----------
T ss_pred CEEEEECCCCcEEEEec-CccCCCceEEEEeCCCC-----EEEEEC--------------CCCEEEEEcC----------
Confidence 56888995544444442 22223567889999996 665541 2236888885
Q ss_pred hhhcCCCCCCcceecC--CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeee
Q 003363 353 ELKESSSEDLPVVNLT--ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (826)
Q Consensus 353 ~~~~~~~~~~~~~~Lt--~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 430 (826)
++.....+. ..........++|||+ |++.... ...|+++|..+.....+
T Consensus 150 -------~g~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~----------~~~i~~~~~~g~~~~~~----------- 200 (286)
T 1q7f_A 150 -------NGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNR----------AHCVKVFNYEGQYLRQI----------- 200 (286)
T ss_dssp -------TSCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGG----------GTEEEEEETTCCEEEEE-----------
T ss_pred -------CCCEEEEeCCCCccCCcEEEEECCCCC-EEEEECC----------CCEEEEEcCCCCEEEEE-----------
Confidence 333333332 2223456788999998 4333322 25699998644211110
Q ss_pred eccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC--CeeeEEEeecCCEEEEEEeC
Q 003363 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGDNIIAVSSS 508 (826)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~--~~~~~~~s~dg~~l~~~~s~ 508 (826)
.. .+.+ ..+..+++++||+ |+++.. .....|.++|.++..+..+..... ......++++|+ +++. +.
T Consensus 201 ~~--~g~~-----~~p~~i~~d~~G~-l~v~~~-~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs-~~ 269 (286)
T 1q7f_A 201 GG--EGIT-----NYPIGVGINSNGE-ILIADN-HNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGS-VVLA-SK 269 (286)
T ss_dssp SC--TTTS-----CSEEEEEECTTCC-EEEEEC-SSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTE-EEEE-ET
T ss_pred cc--CCcc-----CCCcEEEECCCCC-EEEEeC-CCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCc-EEEE-CC
Confidence 00 0000 1223567889996 655532 222367777876555555544322 123346677764 5554 32
Q ss_pred CCCCCeEEEEee
Q 003363 509 PVDVPQVKYGYF 520 (826)
Q Consensus 509 ~~~p~~l~~~~~ 520 (826)
+ ..|.+.+.
T Consensus 270 -~--~~v~v~~~ 278 (286)
T 1q7f_A 270 -D--YRLYIYRY 278 (286)
T ss_dssp -T--TEEEEEEC
T ss_pred -C--CeEEEEEc
Confidence 2 45666554
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0019 Score=66.08 Aligned_cols=139 Identities=17% Similarity=0.190 Sum_probs=73.0
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
..++.+|.++..+..+. .+....+..+.++|||+. |+..+. ....|+.+|.
T Consensus 56 ~~V~~~d~~G~~~W~~~-~~~~~~~~~~~~~~dG~~----lv~~~~--------------~~~~v~~vd~---------- 106 (276)
T 3no2_A 56 KGAKMITRDGRELWNIA-APAGCEMQTARILPDGNA----LVAWCG--------------HPSTILEVNM---------- 106 (276)
T ss_dssp SEEEEECTTSCEEEEEE-CCTTCEEEEEEECTTSCE----EEEEES--------------TTEEEEEECT----------
T ss_pred CCEEEECCCCCEEEEEc-CCCCccccccEECCCCCE----EEEecC--------------CCCEEEEEeC----------
Confidence 35788888433333442 222335567889999995 544331 0224555654
Q ss_pred hhhcCCCCCCcceecCC------CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeee
Q 003363 353 ELKESSSEDLPVVNLTE------SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 426 (826)
Q Consensus 353 ~~~~~~~~~~~~~~Lt~------~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 426 (826)
++.....+.- .........+++||+.|+.... ...|+.+|.. |+....
T Consensus 107 -------~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~-----------~~~v~~~d~~-G~~~w~------- 160 (276)
T 3no2_A 107 -------KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA-----------TSEVREIAPN-GQLLNS------- 160 (276)
T ss_dssp -------TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT-----------TTEEEEECTT-SCEEEE-------
T ss_pred -------CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC-----------CCEEEEECCC-CCEEEE-------
Confidence 2222222210 0112334568899998764332 2568899876 443110
Q ss_pred eeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEE
Q 003363 427 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 482 (826)
Q Consensus 427 ~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~ 482 (826)
+..+ . .....+..++|+.++.. . ....|+.+|.++|++..
T Consensus 161 ---~~~~--~--------~~~~~~~~~~g~~~v~~-~--~~~~v~~~d~~tG~~~w 200 (276)
T 3no2_A 161 ---VKLS--G--------TPFSSAFLDNGDCLVAC-G--DAHCFVQLNLESNRIVR 200 (276)
T ss_dssp ---EECS--S--------CCCEEEECTTSCEEEEC-B--TTSEEEEECTTTCCEEE
T ss_pred ---EECC--C--------CccceeEcCCCCEEEEe-C--CCCeEEEEeCcCCcEEE
Confidence 0000 0 11234567888855433 2 23369999999787653
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0012 Score=69.03 Aligned_cols=179 Identities=11% Similarity=0.015 Sum_probs=107.7
Q ss_pred ceEEEEEccCCce--EeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 273 PSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 273 ~~l~v~d~~~g~~--~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
..|++++++++.. ..+ ..+-.....+++.+.+.. |+++-. ....|+++++
T Consensus 57 ~~I~r~~~~g~~~~~~~~--~~~l~~p~glavd~~~g~----ly~~d~--------------~~~~I~~~~~-------- 108 (318)
T 3sov_A 57 EAIKRTEFNKTESVQNVV--VSGLLSPDGLACDWLGEK----LYWTDS--------------ETNRIEVSNL-------- 108 (318)
T ss_dssp TEEEEEETTSSSCCCEEE--EECCSCCCEEEEETTTTE----EEEEET--------------TTTEEEEEET--------
T ss_pred CcEEEEEccCCCceEEEE--cCCCCCccEEEEEcCCCe----EEEEEC--------------CCCEEEEEEC--------
Confidence 6789999887642 222 112224567888887776 777642 2237889987
Q ss_pred hhhhhcCCCCCCcceecC-CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeee
Q 003363 351 ELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 429 (826)
++...+.+. .........++.|++.+|+|..... ...|+++++++...+.+...
T Consensus 109 ---------dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~---------~~~I~r~~~dG~~~~~~~~~------- 163 (318)
T 3sov_A 109 ---------DGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGE---------VPKIERAGMDGSSRFIIINS------- 163 (318)
T ss_dssp ---------TSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSS---------SCEEEEEETTSCSCEEEECS-------
T ss_pred ---------CCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCC---------CCEEEEEEcCCCCeEEEEEC-------
Confidence 554444443 3334456778889888887775321 35799999876443221100
Q ss_pred eeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCC
Q 003363 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSP 509 (826)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~ 509 (826)
.+ .....++|+++++.||++- .....|+++|++++..+.+...... .-..++.+++.+|++-.
T Consensus 164 -------~l-----~~Pnglavd~~~~~lY~aD--~~~~~I~~~d~dG~~~~~~~~~~~~-~P~glav~~~~lywtd~-- 226 (318)
T 3sov_A 164 -------EI-----YWPNGLTLDYEEQKLYWAD--AKLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFEDILYWTDW-- 226 (318)
T ss_dssp -------SC-----SCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEECSCCS-CEEEEEEETTEEEEEET--
T ss_pred -------CC-----CCccEEEEeccCCEEEEEE--CCCCEEEEEcCCCCceEEEecCCCC-CceEEEEeCCEEEEEec--
Confidence 00 0124678999888898873 3456899999987776666542221 11245556777777633
Q ss_pred CCCCeEEEEeecc
Q 003363 510 VDVPQVKYGYFVD 522 (826)
Q Consensus 510 ~~p~~l~~~~~~~ 522 (826)
....|+.++..+
T Consensus 227 -~~~~V~~~~~~~ 238 (318)
T 3sov_A 227 -STHSILACNKYT 238 (318)
T ss_dssp -TTTEEEEEETTT
T ss_pred -CCCeEEEEECCC
Confidence 234577776533
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0024 Score=66.84 Aligned_cols=161 Identities=11% Similarity=0.100 Sum_probs=101.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-----ceeEEEecC-CCccccccCCCcccceeecCCCCeEEEEee
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-----QLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAE 227 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~ 227 (826)
.....+.|++++++|+++... ...++.+...+ ....++... ... .++++.+.+..|+++-.
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~---~~~I~~~~~~g~~~~~~~~~~~~~~~~~p----------~glavd~~~~~ly~~d~ 96 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLS---QRMICSTQLDRAHGVSSYDTVISRDIQAP----------DGLAVDWIHSNIYWTDS 96 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETT---TTEEEEEEC--------CEEEECSSCSCC----------CEEEEETTTTEEEEEET
T ss_pred CceEEEEEEeCCCEEEEEECC---CCcEEEEECCCCCCCcccEEEEeCCCCCc----------CEEEEeecCCeEEEEEC
Confidence 356789999999998776542 33577776332 222232211 122 57888888887776522
Q ss_pred cCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCC
Q 003363 228 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 307 (826)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~ 307 (826)
....|.++++++...+.+. .........++..|++.
T Consensus 97 -------------------------------------------~~~~I~~~~~~g~~~~~~~-~~~~~~P~~iavdp~~g 132 (316)
T 1ijq_A 97 -------------------------------------------VLGTVSVADTKGVKRKTLF-RENGSKPRAIVVDPVHG 132 (316)
T ss_dssp -------------------------------------------TTTEEEEEETTSSSEEEEE-ECTTCCEEEEEEETTTT
T ss_pred -------------------------------------------CCCEEEEEeCCCCceEEEE-ECCCCCcceEEeCCCCC
Confidence 2357899999877666552 11223566888999888
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecC-CCCccccCceecCCCCEE
Q 003363 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFL 386 (826)
Q Consensus 308 ~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~l 386 (826)
. |+++.+. ....|+++++ ++...+.+. .........+|+|++++|
T Consensus 133 ~----ly~~d~~-------------~~~~I~~~~~-----------------dG~~~~~~~~~~~~~P~gla~d~~~~~l 178 (316)
T 1ijq_A 133 F----MYWTDWG-------------TPAKIKKGGL-----------------NGVDIYSLVTENIQWPNGITLDLLSGRL 178 (316)
T ss_dssp E----EEEEECS-------------SSCEEEEEET-----------------TSCCEEEEECSSCSCEEEEEEETTTTEE
T ss_pred E----EEEEccC-------------CCCeEEEEcC-----------------CCCCeEEEEECCCCCceEEEEeccCCEE
Confidence 7 7776532 1137999997 444444342 233445678899999999
Q ss_pred EEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 387 ~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
+|.... ...|+++|+++..
T Consensus 179 Y~~D~~----------~~~I~~~d~dg~~ 197 (316)
T 1ijq_A 179 YWVDSK----------LHSISSIDVNGGN 197 (316)
T ss_dssp EEEETT----------TTEEEEEETTSCS
T ss_pred EEEECC----------CCeEEEEecCCCc
Confidence 888754 2579999987633
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0012 Score=66.97 Aligned_cols=173 Identities=5% Similarity=-0.036 Sum_probs=92.2
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
..|+++|..++....+. ......+..++++|||+ |++... ...|+++|.
T Consensus 46 ~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~-----l~v~~~---------------~~~i~~~d~---------- 94 (270)
T 1rwi_B 46 GRVVKLATGSTGTTVLP-FNGLYQPQGLAVDGAGT-----VYVTDF---------------NNRVVTLAA---------- 94 (270)
T ss_dssp CEEEEECC-----EECC-CCSCCSCCCEEECTTCC-----EEEEET---------------TTEEEEECT----------
T ss_pred CcEEEecCCCcccceEe-eCCcCCcceeEECCCCC-----EEEEcC---------------CCEEEEEeC----------
Confidence 57888887776655442 12223566789999987 655541 236888886
Q ss_pred hhhcCCCCCCcceecCCC-CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeee
Q 003363 353 ELKESSSEDLPVVNLTES-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 431 (826)
Q Consensus 353 ~~~~~~~~~~~~~~Lt~~-~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 431 (826)
+++....+... ........++|||+ |++.... ...|++++..+........
T Consensus 95 -------~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~----------~~~i~~~~~~~~~~~~~~~---------- 146 (270)
T 1rwi_B 95 -------GSNNQTVLPFDGLNYPEGLAVDTQGA-VYVADRG----------NNRVVKLAAGSKTQTVLPF---------- 146 (270)
T ss_dssp -------TCSCCEECCCCSCSSEEEEEECTTCC-EEEEEGG----------GTEEEEECTTCCSCEECCC----------
T ss_pred -------CCceEeeeecCCcCCCcceEECCCCC-EEEEECC----------CCEEEEEECCCceeEeecc----------
Confidence 44444433322 23456778999997 4433322 2468888643322110000
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC-CCeeeEEEeecCCEEEEEEeCCC
Q 003363 432 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPV 510 (826)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~-~~~~~~~~s~dg~~l~~~~s~~~ 510 (826)
..+ ..+..+++++||+ ||++.. +...|+++|.+++......... .......++++| .+++.....
T Consensus 147 ----~~~-----~~p~~i~~~~~g~-l~v~~~--~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~- 212 (270)
T 1rwi_B 147 ----TGL-----NDPDGVAVDNSGN-VYVTDT--DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-TVYVTEHNT- 212 (270)
T ss_dssp ----CSC-----CSCCCEEECTTCC-EEEEEG--GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC-CEEEEETTT-
T ss_pred ----ccC-----CCceeEEEeCCCC-EEEEEC--CCCEEEEEecCCCceEeecccCCCCceEEEECCCC-CEEEEECCC-
Confidence 000 1234677889997 666532 3346888898877766543332 223334455555 444444322
Q ss_pred CCCeEEEEee
Q 003363 511 DVPQVKYGYF 520 (826)
Q Consensus 511 ~p~~l~~~~~ 520 (826)
..|++++.
T Consensus 213 --~~v~~~~~ 220 (270)
T 1rwi_B 213 --NQVVKLLA 220 (270)
T ss_dssp --SCEEEECT
T ss_pred --CcEEEEcC
Confidence 23666654
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0015 Score=70.80 Aligned_cols=161 Identities=11% Similarity=0.115 Sum_probs=102.7
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-----ceeEEEec-CCCccccccCCCcccceeecCCCCeEEEEee
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-----QLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAE 227 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~-----~~~~~~~~-~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~ 227 (826)
......+|++.+++|+++... ...++.+...+ ....+... .... .++++.+.++.|+++-.
T Consensus 112 ~~~~~l~~d~~~~~lywsD~~---~~~I~~~~~~g~~~~~~~~~~~~~~~~~p----------~glavD~~~~~lY~~d~ 178 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDLS---QRMICSTQLDRAHGVSSYDTVISRDIQAP----------DGLAVDWIHSNIYWTDS 178 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETT---TTEEEEEEC------CCCEEEECSSCSCE----------EEEEEETTTTEEEEEET
T ss_pred CcceEEeeeeccCceEEEecC---CCeEEEEEcccCCCCCcceEEEeCCCCCc----------ccEEEEecCCceEEEEC
Confidence 457788999999888776432 23466666322 22333321 1122 57788887777776521
Q ss_pred cCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCC-CccceEEEeeCC
Q 003363 228 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLN 306 (826)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg 306 (826)
....|.+++++++..+.+ .... ..+..++..|.+
T Consensus 179 -------------------------------------------~~~~I~~~~~~g~~~~~l--~~~~~~~P~~iavdp~~ 213 (400)
T 3p5b_L 179 -------------------------------------------VLGTVSVADTKGVKRKTL--FRENGSKPRAIVVDPVH 213 (400)
T ss_dssp -------------------------------------------TTTEEEEECTTTCSEEEE--EECSSCCEEEEEEETTT
T ss_pred -------------------------------------------CCCeEEEEeCCCCceEEE--EeCCCCCcceEEEeccc
Confidence 235789999988776666 3322 346778999988
Q ss_pred CCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecC-CCCccccCceecCCCCE
Q 003363 307 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKF 385 (826)
Q Consensus 307 ~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~ 385 (826)
.. |+++.+.. ...|+++++ ++...+.+. .........+++|++++
T Consensus 214 g~----ly~td~~~-------------~~~I~~~~~-----------------dG~~~~~~~~~~l~~P~glavd~~~~~ 259 (400)
T 3p5b_L 214 GF----MYWTDWGT-------------PAKIKKGGL-----------------NGVDIYSLVTENIQWPNGITLDLLSGR 259 (400)
T ss_dssp TE----EEEEECSS-------------SCCEEEEET-----------------TSCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred Ce----EEEEeCCC-------------CCEEEEEeC-----------------CCCccEEEEECCCCceEEEEEEeCCCE
Confidence 76 77765321 237999998 554444443 33345677899999999
Q ss_pred EEEEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 386 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 386 l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
|+|.... ...|+++|+++...
T Consensus 260 lY~aD~~----------~~~I~~~d~dG~~~ 280 (400)
T 3p5b_L 260 LYWVDSK----------LHSISSIDVNGGNR 280 (400)
T ss_dssp EEEEETT----------TTEEEEEETTSCCC
T ss_pred EEEEECC----------CCEEEEEeCCCCcc
Confidence 9888644 26799999876443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0008 Score=67.08 Aligned_cols=178 Identities=13% Similarity=0.179 Sum_probs=104.0
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhh
Q 003363 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (826)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (826)
...|.++|+++|++..-...+. .......+++|+. |+...|. ...++++|.
T Consensus 64 ~S~v~~vD~~Tgkv~~~~~l~~--~~FgeGit~~g~~----ly~ltw~--------------~~~v~v~D~--------- 114 (262)
T 3nol_A 64 RSSIRKVDIESGKTLQQIELGK--RYFGEGISDWKDK----IVGLTWK--------------NGLGFVWNI--------- 114 (262)
T ss_dssp EEEEEEECTTTCCEEEEEECCT--TCCEEEEEEETTE----EEEEESS--------------SSEEEEEET---------
T ss_pred CceEEEEECCCCcEEEEEecCC--ccceeEEEEeCCE----EEEEEee--------------CCEEEEEEC---------
Confidence 3689999999998765411222 2223346677887 8776643 337999998
Q ss_pred hhhhcCCCCCCcc-eecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeee
Q 003363 352 LELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (826)
Q Consensus 352 ~~~~~~~~~~~~~-~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 430 (826)
++.+. .++.... ....+++||++|+ .++. ...|+.+|..+.+... -+++.
T Consensus 115 --------~t~~~~~ti~~~~---eG~glt~dg~~L~-~SdG----------s~~i~~iDp~T~~v~~-------~I~V~ 165 (262)
T 3nol_A 115 --------RNLRQVRSFNYDG---EGWGLTHNDQYLI-MSDG----------TPVLRFLDPESLTPVR-------TITVT 165 (262)
T ss_dssp --------TTCCEEEEEECSS---CCCCEEECSSCEE-ECCS----------SSEEEEECTTTCSEEE-------EEECE
T ss_pred --------ccCcEEEEEECCC---CceEEecCCCEEE-EECC----------CCeEEEEcCCCCeEEE-------EEEec
Confidence 55443 3443321 3346678998764 4432 2679999988755421 11111
Q ss_pred eccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC-------------CCeeeEEEee
Q 003363 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-------------SNFSWSLLTL 497 (826)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~-------------~~~~~~~~s~ 497 (826)
. ....+ ..++.+.|. || .||+ ..+. ...|.+||+++|++.....-. ......++++
T Consensus 166 ~--~g~~~-----~~lNELe~~-~G-~lya-n~w~-~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp 234 (262)
T 3nol_A 166 A--HGEEL-----PELNELEWV-DG-EIFA-NVWQ-TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDK 234 (262)
T ss_dssp E--TTEEC-----CCEEEEEEE-TT-EEEE-EETT-SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEET
T ss_pred c--CCccc-----cccceeEEE-CC-EEEE-EEcc-CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcC
Confidence 0 00001 012235676 77 4664 3444 347999999999987543321 1224457888
Q ss_pred cCCEEEEEEeCCCCCCeEEEEeec
Q 003363 498 DGDNIIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 498 dg~~l~~~~s~~~~p~~l~~~~~~ 521 (826)
+++.++.+..... .+|-+.+.
T Consensus 235 ~~~~lfVTGK~Wp---~~~ev~~~ 255 (262)
T 3nol_A 235 EHHRLFVTGKLWP---KVFEITLT 255 (262)
T ss_dssp TTTEEEEEETTCS---EEEEEEEE
T ss_pred CCCEEEEECCCCC---ceEEEEEe
Confidence 8888888887663 46665553
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.002 Score=67.54 Aligned_cols=194 Identities=11% Similarity=-0.035 Sum_probs=99.6
Q ss_pred eEEEEEccCCceEeccCCCC---CCccceEEEee-CCCCCccEEEEEeecCcceeeee---eeeccCCCceEEEEccccc
Q 003363 274 SLFVININSGEVQAVKGIPK---SLSVGQVVWAP-LNEGLHQYLVFVGWSSETRKLGI---KYCYNRPCALYAVRVSLYK 346 (826)
Q Consensus 274 ~l~v~d~~~g~~~~l~~~~~---~~~~~~~~wSP-Dg~~~~~~lvf~~~~~~~~~~g~---~~~~~~~~~l~~~d~~~~~ 346 (826)
.|+++|.++++++.+..... ......+++.| ||+ |+++.....-..... .........|+++|.
T Consensus 102 ~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-----l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~---- 172 (322)
T 2fp8_A 102 HLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-----VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP---- 172 (322)
T ss_dssp EEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-----EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET----
T ss_pred CEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-----EEEECCcccccccccceehcccCCCceEEEEeC----
Confidence 37788877776655421111 12345788999 885 777642210000000 000012246999997
Q ss_pred chhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeee
Q 003363 347 SEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 426 (826)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 426 (826)
.+++.+.+...........|+|||+.|++.... ...|+++++.+.... ....+
T Consensus 173 -------------~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~----------~~~I~~~~~~~~~~~----~~~~~ 225 (322)
T 2fp8_A 173 -------------STKETTLLLKELHVPGGAEVSADSSFVLVAEFL----------SHQIVKYWLEGPKKG----TAEVL 225 (322)
T ss_dssp -------------TTTEEEEEEEEESCCCEEEECTTSSEEEEEEGG----------GTEEEEEESSSTTTT----CEEEE
T ss_pred -------------CCCEEEEeccCCccCcceEECCCCCEEEEEeCC----------CCeEEEEECCCCcCC----ccceE
Confidence 555554443332334567899999987666543 257999998753211 10001
Q ss_pred eeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEe--------CCeEEEEEEECCCCcEEEecCCCCC-ee-eEEEe
Q 003363 427 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW--------GSSQVIISVNVSSGELLRITPAESN-FS-WSLLT 496 (826)
Q Consensus 427 ~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~--------~~~~~l~~vdl~tg~~~~lt~~~~~-~~-~~~~s 496 (826)
.. . +| ...++..+||+ |+++... .....|+++|.++..+..+....+. .. ...+.
T Consensus 226 ~~---~------~g-----P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~ 290 (322)
T 2fp8_A 226 VK---I------PN-----PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQ 290 (322)
T ss_dssp EE---C------SS-----EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEE
T ss_pred Ee---C------CC-----CCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEE
Confidence 11 0 00 12457788997 6666543 2246789999865444555443321 11 11222
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEeec
Q 003363 497 LDGDNIIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 497 ~dg~~l~~~~s~~~~p~~l~~~~~~ 521 (826)
.+++.|++.... ...|.++++.
T Consensus 291 ~~~g~L~v~~~~---~~~i~~~~~~ 312 (322)
T 2fp8_A 291 EHDGLLYIGTLF---HGSVGILVYD 312 (322)
T ss_dssp EETTEEEEECSS---CSEEEEEEC-
T ss_pred EeCCEEEEeecC---CCceEEEecc
Confidence 345666655432 2346666654
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.019 Score=58.65 Aligned_cols=140 Identities=9% Similarity=-0.035 Sum_probs=77.8
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
..|+++|. +++...+........+..+++.|||+ |++... ....|+++|.
T Consensus 120 ~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-----l~v~~~--------------~~~~i~~~~~---------- 169 (299)
T 2z2n_A 120 NRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-----LWFTEN--------------QNNAIGRITE---------- 169 (299)
T ss_dssp TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-----EEEEET--------------TTTEEEEECT----------
T ss_pred ceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-----EEEEeC--------------CCCEEEEEcC----------
Confidence 56888888 66655442111223466788999985 766542 1236888875
Q ss_pred hhhcCCCCCCccee--cCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeee
Q 003363 353 ELKESSSEDLPVVN--LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (826)
Q Consensus 353 ~~~~~~~~~~~~~~--Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 430 (826)
+++... +...........+++||+ | |.+... ...|+++|. ++.....
T Consensus 170 --------~g~~~~~~~~~~~~~~~~i~~~~~g~-l-~v~~~~---------~~~i~~~~~-~g~~~~~----------- 218 (299)
T 2z2n_A 170 --------SGDITEFKIPTPASGPVGITKGNDDA-L-WFVEII---------GNKIGRITT-SGEITEF----------- 218 (299)
T ss_dssp --------TCCEEEEECSSTTCCEEEEEECTTSS-E-EEEETT---------TTEEEEECT-TCCEEEE-----------
T ss_pred --------CCcEEEeeCCCCCCcceeEEECCCCC-E-EEEccC---------CceEEEECC-CCcEEEE-----------
Confidence 223322 222233455678899988 4 444321 246899987 4332111
Q ss_pred eccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003363 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (826)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt 484 (826)
..+.. . ..+..+.+++||+ |+++. .+...|+.+|. +++++.+.
T Consensus 219 ~~~~~--~-----~~~~~i~~~~~g~-l~v~~--~~~~~i~~~d~-~g~~~~~~ 261 (299)
T 2z2n_A 219 KIPTP--N-----ARPHAITAGAGID-LWFTE--WGANKIGRLTS-NNIIEEYP 261 (299)
T ss_dssp ECSST--T-----CCEEEEEECSTTC-EEEEE--TTTTEEEEEET-TTEEEEEE
T ss_pred ECCCC--C-----CCceeEEECCCCC-EEEec--cCCceEEEECC-CCceEEEe
Confidence 00000 0 1223566788987 66653 23456888898 56766664
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00064 Score=74.80 Aligned_cols=211 Identities=10% Similarity=0.015 Sum_probs=112.6
Q ss_pred ceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccc
Q 003363 125 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHG 202 (826)
Q Consensus 125 ~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g 202 (826)
....+.++++.+. .....+.... ..+...+| ||+.|+....++ .+.+|+ .++...... ...+
T Consensus 151 ~dg~i~iwd~~~~-~~~~~~~~h~-----~~v~~l~~--~~~~l~sg~~dg-----~i~vwd~~~~~~~~~~~---~h~~ 214 (435)
T 1p22_A 151 RDNTIKIWDKNTL-ECKRILTGHT-----GSVLCLQY--DERVIITGSSDS-----TVRVWDVNTGEMLNTLI---HHCE 214 (435)
T ss_dssp SSSCEEEEESSSC-CEEEEECCCS-----SCEEEEEC--CSSEEEEEETTS-----CEEEEESSSCCEEEEEC---CCCS
T ss_pred CCCeEEEEeCCCC-eEEEEEcCCC-----CcEEEEEE--CCCEEEEEcCCC-----eEEEEECCCCcEEEEEc---CCCC
Confidence 3445666665322 2222332222 34666666 888888776543 456663 333333322 2222
Q ss_pred cccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCC---CCCccCCCCCCcceeecCCCccCCCccCceEEEEE
Q 003363 203 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG---SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVIN 279 (826)
Q Consensus 203 ~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d 279 (826)
.| ..+.|++ ..|+..+.++... .|+....... .....+........| +....+++..+..|.+||
T Consensus 215 ~v------~~l~~~~--~~l~s~s~dg~i~--vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd 282 (435)
T 1p22_A 215 AV------LHLRFNN--GMMVTCSKDRSIA--VWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWN 282 (435)
T ss_dssp CE------EEEECCT--TEEEEEETTSCEE--EEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE
T ss_pred cE------EEEEEcC--CEEEEeeCCCcEE--EEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEE
Confidence 22 6777864 4677776665433 2222111111 111223333333344 222344555678999999
Q ss_pred ccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCC
Q 003363 280 INSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSS 359 (826)
Q Consensus 280 ~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 359 (826)
+.+++..... ......+..+.| +++. |+..+ .+..|..+|+
T Consensus 283 ~~~~~~~~~~-~~~~~~v~~~~~--~~~~----l~~g~---------------~dg~i~iwd~----------------- 323 (435)
T 1p22_A 283 TSTCEFVRTL-NGHKRGIACLQY--RDRL----VVSGS---------------SDNTIRLWDI----------------- 323 (435)
T ss_dssp TTTCCEEEEE-ECCSSCEEEEEE--ETTE----EEEEE---------------TTSCEEEEET-----------------
T ss_pred CCcCcEEEEE-cCCCCcEEEEEe--CCCE----EEEEe---------------CCCeEEEEEC-----------------
Confidence 9988765431 122334455555 5664 55544 3347889998
Q ss_pred CCCc-ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 360 EDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 360 ~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
.+++ ...+..+...+....| ||++|+..+.+ ..|.+||+.++.
T Consensus 324 ~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~d-----------g~i~vwd~~~~~ 367 (435)
T 1p22_A 324 ECGACLRVLEGHEELVRCIRF--DNKRIVSGAYD-----------GKIKVWDLVAAL 367 (435)
T ss_dssp TTCCEEEEECCCSSCEEEEEC--CSSEEEEEETT-----------SCEEEEEHHHHT
T ss_pred CCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCC-----------CcEEEEECCCCC
Confidence 4444 4556556666666666 88888766644 358889886644
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00014 Score=85.12 Aligned_cols=179 Identities=9% Similarity=0.001 Sum_probs=103.2
Q ss_pred ceEEEEEccC----CceEeccCCCCC-CccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccc
Q 003363 273 PSLFVININS----GEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (826)
Q Consensus 273 ~~l~v~d~~~----g~~~~l~~~~~~-~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (826)
..|+++++++ ...+.+ .... ..+..+++.+.++. |+++- . ....|+++++
T Consensus 428 ~~I~~~~~~g~~~~~~~~~~--i~~~~~~P~glavD~~~g~----LY~tD-~-------------~~~~I~v~d~----- 482 (699)
T 1n7d_A 428 RMICSTQLDRAHGVSSYDTV--ISRDIQAPDGLAVDWIHSN----IYWTD-S-------------VLGTVSVADT----- 482 (699)
T ss_dssp TSBEEEESCCCCC-CCCCCB--CCSCC--CCCEECCCSSSB----CEECC-T-------------TTSCEEEEBS-----
T ss_pred CeEEEEecCCCCCCcceEEE--EeCCCCCcceEEEEeeCCc----EEEEe-c-------------cCCeEEEEec-----
Confidence 5688888875 333333 2222 24456778777776 76653 1 2236889987
Q ss_pred hhhhhhhhcCCCCCCcceecCC-CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeee
Q 003363 348 EASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 426 (826)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 426 (826)
++...+.+.. ........++.|++.+|+|.... ....|+++++++...+.+...
T Consensus 483 ------------dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~---------~~~~I~~~~~dG~~~~~l~~~---- 537 (699)
T 1n7d_A 483 ------------KGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG---------TPAKIKKGGLNGVDIYSLVTE---- 537 (699)
T ss_dssp ------------SSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS---------SSCCEEBCCSSSCCCCEESCS----
T ss_pred ------------CCCceEEEEeCCCCCcceEEEccCCCcEEEcccC---------CCCeEEEEeCCCCCeeEEEeC----
Confidence 5555554443 23445677899988888766532 125688888766433211100
Q ss_pred eeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCC-eeeEEEeecCCEEEEE
Q 003363 427 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESN-FSWSLLTLDGDNIIAV 505 (826)
Q Consensus 427 ~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~-~~~~~~s~dg~~l~~~ 505 (826)
.+ .....++|+++++.||++- .....|++++++++..+.+...... ..-..++.+++.+|++
T Consensus 538 ----------~l-----~~PnGlavd~~~~~LY~aD--~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywt 600 (699)
T 1n7d_A 538 ----------NI-----QWPNGITLDLLSGRLYWVD--SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWT 600 (699)
T ss_dssp ----------SC-----SSCCCEEECTTTCCEEEEE--TTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEE
T ss_pred ----------CC-----CCccEEEEeccCCEEEEEe--cCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEE
Confidence 00 0234788999988888864 3456789999987666666543211 1112455567777766
Q ss_pred EeCCCCCCeEEEEeec
Q 003363 506 SSSPVDVPQVKYGYFV 521 (826)
Q Consensus 506 ~s~~~~p~~l~~~~~~ 521 (826)
.... .+|.+++..
T Consensus 601 d~~~---~~V~~~d~~ 613 (699)
T 1n7d_A 601 DIIN---EAIFSANRL 613 (699)
T ss_dssp CSTT---TCEEEEETT
T ss_pred eCCC---CeEEEEEcc
Confidence 5332 357777643
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0045 Score=72.89 Aligned_cols=180 Identities=8% Similarity=-0.031 Sum_probs=106.9
Q ss_pred ceEEEEEccCC----ceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccch
Q 003363 273 PSLFVININSG----EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 348 (826)
Q Consensus 273 ~~l~v~d~~~g----~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 348 (826)
..|+++++++. ..+.+. ...-..+..+++.+.++. ||++-. ....|+++++
T Consensus 446 ~~I~~~~l~g~~~~~~~~~vi-~~~l~~P~GLAvD~~~~~----LY~tD~--------------~~~~I~v~~l------ 500 (791)
T 3m0c_C 446 RMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIHSN----IYWTDS--------------VLGTVSVADT------ 500 (791)
T ss_dssp TEEEEEEC--------CEEEE-CSSCSCCCEEEEETTTTE----EEEEET--------------TTTEEEEEET------
T ss_pred eeEEEEeccCCCCCcceeEEE-ecCCCCcceeeeeecCCc----EEEEec--------------CCCeEEEEeC------
Confidence 56888888763 333331 112235667889988887 877642 2237999998
Q ss_pred hhhhhhhcCCCCCCcceecCC-CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeee
Q 003363 349 ASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 427 (826)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 427 (826)
++...+.|.. ........++.|.+.+|+|+.... ...|+++++++...+.+...
T Consensus 501 -----------dG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~---------~~~I~~~~~dG~~~~~lv~~----- 555 (791)
T 3m0c_C 501 -----------KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT---------PAKIKKGGLNGVDIYSLVTE----- 555 (791)
T ss_dssp -----------TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS---------SCEEEEEETTSCCEEEEECS-----
T ss_pred -----------CCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCC---------CCeEEEEecCCCceEEEEeC-----
Confidence 5555555543 334466788999988888876331 25799999876443221110
Q ss_pred eeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCC-eeeEEEeecCCEEEEEE
Q 003363 428 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESN-FSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 428 ~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~-~~~~~~s~dg~~l~~~~ 506 (826)
.+ .....+++.+++..||++- .....|+++++++...+.+...... ..-..++.+++.||++-
T Consensus 556 ---------~l-----~~P~GLavD~~~~~LYwaD--~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD 619 (791)
T 3m0c_C 556 ---------NI-----QWPNGITLDLLSGRLYWVD--SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 619 (791)
T ss_dssp ---------SC-----SCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEE
T ss_pred ---------CC-----CCceEEEEecCCCeEEEEe--CCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEE
Confidence 00 0123566777778888863 3445799999988877777544221 12235566777777665
Q ss_pred eCCCCCCeEEEEeec
Q 003363 507 SSPVDVPQVKYGYFV 521 (826)
Q Consensus 507 s~~~~p~~l~~~~~~ 521 (826)
... ..|+.++..
T Consensus 620 ~~~---~~I~~~dk~ 631 (791)
T 3m0c_C 620 IIN---EAIFSANRL 631 (791)
T ss_dssp TTT---TEEEEEETT
T ss_pred CCC---CEEEEEeCC
Confidence 332 446666643
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0043 Score=71.32 Aligned_cols=162 Identities=10% Similarity=0.045 Sum_probs=108.3
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecC-CCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
.......|.|++.+|+++... ...++.+. +++..+.+.... ... .+++..+.++.|+++-.
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~---~~~I~r~~~~g~~~~~v~~~g~~~P----------~GlAvD~~~~~LY~tD~---- 99 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDIS---LKTISRAFMNGSALEHVVEFGLDYP----------EGMAVDWLGKNLYWADT---- 99 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETT---TTEEEEEETTSCSCEEEECSSCSCC----------CEEEEETTTTEEEEEET----
T ss_pred CceEEEEEECCCCEEEEEECC---CCeEEEEECCCCCcEEEEeCCCCCc----------ceEEEEeCCCEEEEEEC----
Confidence 346788999999888776432 23577776 444444444322 122 57888888888877521
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
....|.+++++++..+.+. ...-..+..++..|....
T Consensus 100 ---------------------------------------~~~~I~v~~~dG~~~~~l~-~~~l~~P~~iavdp~~G~--- 136 (628)
T 4a0p_A 100 ---------------------------------------GTNRIEVSKLDGQHRQVLV-WKDLDSPRALALDPAEGF--- 136 (628)
T ss_dssp ---------------------------------------TTTEEEEEETTSTTCEEEE-CSSCCCEEEEEEETTTTE---
T ss_pred ---------------------------------------CCCEEEEEecCCCcEEEEE-eCCCCCcccEEEccCCCe---
Confidence 2368999999887766652 122235678899997766
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEec
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~ 391 (826)
|+++-|.. ...|+++++ ++...+.+..........++++++++|+|...
T Consensus 137 -lY~tD~g~-------------~~~I~r~~~-----------------dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~ 185 (628)
T 4a0p_A 137 -MYWTEWGG-------------KPKIDRAAM-----------------DGSERTTLVPNVGRANGLTIDYAKRRLYWTDL 185 (628)
T ss_dssp -EEEEECSS-------------SCEEEEEET-----------------TSCSCEEEECSCSSEEEEEEETTTTEEEEEET
T ss_pred -EEEeCCCC-------------CCEEEEEeC-----------------CCCceEEEECCCCCcceEEEccccCEEEEEEC
Confidence 87765421 237999998 56666666555555677889999999988875
Q ss_pred cCCCCCCCCcccceEEEEeCCCCCC
Q 003363 392 KSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 392 ~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
.. ..|+++|++++..
T Consensus 186 ~~----------~~I~~~d~dG~~~ 200 (628)
T 4a0p_A 186 DT----------NLIESSNMLGLNR 200 (628)
T ss_dssp TT----------TEEEEEETTSCSC
T ss_pred CC----------CEEEEEcCCCCce
Confidence 43 5799999877443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0044 Score=62.03 Aligned_cols=210 Identities=14% Similarity=0.148 Sum_probs=117.7
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
...+..+|.|++++|+.+.+. ...++.++..++..+.+.+... +. .+++++.+||+ ++.+.+.
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~---~~~I~~ld~~g~v~~~i~l~g~--~D------~EGIa~~~~g~-~~vs~E~----- 89 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINK---PAAIVEMTTNGDLIRTIPLDFV--KD------LETIEYIGDNQ-FVISDER----- 89 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEET---TEEEEEEETTCCEEEEEECSSC--SS------EEEEEECSTTE-EEEEETT-----
T ss_pred cCcceeEEeCCCCEEEEEECC---CCeEEEEeCCCCEEEEEecCCC--CC------hHHeEEeCCCE-EEEEECC-----
Confidence 457889999999999887764 4579999965777776655321 11 27899998885 4333232
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc-eE---ecc----CCCCCCccceEEEeeC
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQ---AVK----GIPKSLSVGQVVWAPL 305 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~---~l~----~~~~~~~~~~~~wSPD 305 (826)
...|+++++.... +. ... ..+.......++|.|+
T Consensus 90 --------------------------------------~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~ 131 (255)
T 3qqz_A 90 --------------------------------------DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQ 131 (255)
T ss_dssp --------------------------------------TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETT
T ss_pred --------------------------------------CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCC
Confidence 2456776654332 11 111 1233445678999999
Q ss_pred CCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceec-------CCCCccccCce
Q 003363 306 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-------TESISSAFFPR 378 (826)
Q Consensus 306 g~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-------t~~~~~~~~p~ 378 (826)
+++ |+.+. +..+ ..||.++- .. .+...+.+ ...........
T Consensus 132 ~~~----L~va~-E~~p------------~~i~~~~g-~~--------------~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 132 DHT----FWFFK-EKNP------------IEVYKVNG-LL--------------SSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTE----EEEEE-ESSS------------EEEEEEES-TT--------------CSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCE----EEEEE-CcCC------------ceEEEEcc-cc--------------cCCceeeecchhhccccccCCceeEE
Confidence 987 76654 3222 25777761 00 11111111 01122356678
Q ss_pred ecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCC--CcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCC
Q 003363 379 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF--SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGC 456 (826)
Q Consensus 379 ~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~ 456 (826)
+.|.-..|+.+|... ..|..+|+.+.-.. .+..+...+ ...++ ....+++.++|+
T Consensus 180 ~dp~tg~lliLS~~s----------~~L~~~d~~g~~~~~~~L~~g~~~l--------~~~~~-----qpEGia~d~~G~ 236 (255)
T 3qqz_A 180 FNQQKNTLLVLSHES----------RALQEVTLVGEVIGEMSLTKGSRGL--------SHNIK-----QAEGVAMDASGN 236 (255)
T ss_dssp EETTTTEEEEEETTT----------TEEEEECTTCCEEEEEECSTTGGGC--------SSCCC-----SEEEEEECTTCC
T ss_pred EcCCCCeEEEEECCC----------CeEEEEcCCCCEEEEEEcCCccCCc--------ccccC-----CCCeeEECCCCC
Confidence 888888888888664 56888887653111 111111000 01111 234678999996
Q ss_pred EEEEEEEeCCeEEEEEEECCC
Q 003363 457 TMLLSSIWGSSQVIISVNVSS 477 (826)
Q Consensus 457 ~l~~~~~~~~~~~l~~vdl~t 477 (826)
||+++. . ..+|++...+
T Consensus 237 -lyIvsE-~--n~~y~f~~~~ 253 (255)
T 3qqz_A 237 -IYIVSE-P--NRFYRFTPQS 253 (255)
T ss_dssp -EEEEET-T--TEEEEEEC--
T ss_pred -EEEEcC-C--ceEEEEEecC
Confidence 776642 2 2677776543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00033 Score=81.94 Aligned_cols=98 Identities=14% Similarity=0.187 Sum_probs=65.7
Q ss_pred CceEEEEEccCCceEeccCCCC-CCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 272 QPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~-~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
...|++++++++..+.+ ... ......+++.|++.. |+++.+.. ...|+++++
T Consensus 474 ~~~I~v~d~dg~~~~~l--~~~~~~~P~giavDp~~g~----ly~td~~~-------------~~~I~~~~~-------- 526 (699)
T 1n7d_A 474 LGTVSVADTKGVKRKTL--FREQGSKPRAIVVDPVHGF----MYWTDWGT-------------PAKIKKGGL-------- 526 (699)
T ss_dssp TSCEEEEBSSSCCEEEE--CCCSSCCCCCEECCSSSSC----CEECCCSS-------------SCCEEBCCS--------
T ss_pred CCeEEEEecCCCceEEE--EeCCCCCcceEEEccCCCc----EEEcccCC-------------CCeEEEEeC--------
Confidence 36799999988777666 333 235667899998887 77665321 136888887
Q ss_pred hhhhhcCCCCCCcceec-CCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 351 ELELKESSSEDLPVVNL-TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~L-t~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
++...+.+ ..........+|+|++++|+|.... ...|+++++++..
T Consensus 527 ---------dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~----------~~~I~~~d~dG~~ 573 (699)
T 1n7d_A 527 ---------NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK----------LHSISSIDVNGGN 573 (699)
T ss_dssp ---------SSCCCCEESCSSCSSCCCEEECTTTCCEEEEETT----------TTEEEEECSSSSC
T ss_pred ---------CCCCeeEEEeCCCCCccEEEEeccCCEEEEEecC----------CCeEEEEccCCCc
Confidence 44333333 2333446678999999999887744 2679999987633
|
| >1whs_A Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1bcs_A* 1bcr_A* 1wht_A* 3sc2_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00025 Score=70.54 Aligned_cols=135 Identities=17% Similarity=0.171 Sum_probs=81.1
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cchHH----------------HHHHHHCCcEEEEECC-CCCC
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKS----------------LAFLSSVGYSLLIVNY-RGSL 633 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~~~~----------------~~~la~~G~~Vl~~d~-rG~~ 633 (826)
.+..+..|++...+ .....|+||+++|||+..... ..... ...+ .+-..++-+|. .|.
T Consensus 30 ~~~~lFywf~es~~--~~~~~Pl~lwlnGGPGcSS~~~g~~~E~GP~~v~~~~~~l~~N~~sW-~~~anvlfiDqPvGt- 105 (255)
T 1whs_A 30 AGRSLFYLLQEAPE--DAQPAPLVLWLNGGPGCSSVAYGASEELGAFRVKPRGAGLVLNEYRW-NKVANVLFLDSPAGV- 105 (255)
T ss_dssp TTEEEEEEEECCCG--GGCSCCEEEEECCTTTBCTTTTHHHHTSSSEEECGGGCCEEECTTCG-GGTSEEEEECCSTTS-
T ss_pred CCcEEEEEEEEecC--CCCCCCEEEEECCCCchHHHHHHHHhccCCeEecCCCCeeeeCcccc-cccCCEEEEecCCCC-
Confidence 45678888886542 345789999999999875332 11000 0001 12367899995 453
Q ss_pred CCchhhhhcCCCCCC-cchHHHHHHHHHHHHH-cCCCCCCcEEEEEecchHHHHHHHHHhC------CCceeEEEecCCc
Q 003363 634 GFGEEALQSLPGKVG-SQDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPL 705 (826)
Q Consensus 634 g~G~~~~~~~~~~~~-~~~~~D~~~~i~~l~~-~~~~d~~rv~l~G~S~GG~~a~~~a~~~------p~~~~a~v~~~p~ 705 (826)
|+............+ ....+|+..+++...+ .+.....++.|+|+|+||..+..+|..- .-.++++++.+|+
T Consensus 106 GfSy~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yi~GESYgG~yvp~la~~i~~~n~~~inLkGi~ign~~ 185 (255)
T 1whs_A 106 GFSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPVINLKGFMVGNGL 185 (255)
T ss_dssp TTCEESSGGGGGSCCHHHHHHHHHHHHHHHHHHCGGGTTCEEEEEEEETHHHHHHHHHHHHHHHTCSSCEEEEEEEEEEC
T ss_pred ccCCCcCccccccCCHHHHHHHHHHHHHHHHHhCHHhcCCCEEEEecCCccccHHHHHHHHHHcCCcccccceEEecCCc
Confidence 343321110000111 2235666666654444 3445567899999999999987776421 2358999999999
Q ss_pred cchhh
Q 003363 706 CNLAL 710 (826)
Q Consensus 706 ~~~~~ 710 (826)
++...
T Consensus 186 ~d~~~ 190 (255)
T 1whs_A 186 IDDYH 190 (255)
T ss_dssp CBHHH
T ss_pred cCHHH
Confidence 88643
|
| >4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00021 Score=79.10 Aligned_cols=111 Identities=17% Similarity=0.151 Sum_probs=76.7
Q ss_pred CCCcEEEEEcCCCCCCCCccch----HHHHHHHHCCcEEEEECCCCCCCCchhhh------h--cCCCCCCcchHHHHHH
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYS----KSLAFLSSVGYSLLIVNYRGSLGFGEEAL------Q--SLPGKVGSQDVNDVLT 657 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~----~~~~~la~~G~~Vl~~d~rG~~g~G~~~~------~--~~~~~~~~~~~~D~~~ 657 (826)
+..|++|++-| -+. ...+. .......+.|-.++...+|- ||.+.. + .+..-...+.+.|+..
T Consensus 41 ~~gPIfl~~gG-Eg~--~~~~~~~~g~~~~lA~~~~a~~v~lEHRy---YG~S~P~~~~st~~~nL~yLt~eQALaD~a~ 114 (472)
T 4ebb_A 41 GEGPIFFYTGN-EGD--VWAFANNSAFVAELAAERGALLVFAEHRY---YGKSLPFGAQSTQRGHTELLTVEQALADFAE 114 (472)
T ss_dssp TTCCEEEEECC-SSC--HHHHHHHCHHHHHHHHHHTCEEEEECCTT---STTCCTTGGGGGSTTSCTTCSHHHHHHHHHH
T ss_pred CCCcEEEEECC-Ccc--ccccccCccHHHHHHHHhCCeEEEEeccc---ccCCcCCCCCCccccccccCCHHHHHHHHHH
Confidence 34688888744 222 11111 12334456789999999997 565532 1 1111222445789999
Q ss_pred HHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCcc
Q 003363 658 AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (826)
Q Consensus 658 ~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 706 (826)
.++++.+.......++.++|.|+||.+++++-.++|+++.++++.++++
T Consensus 115 fi~~~k~~~~~~~~pwI~~GGSY~G~LaAW~R~kYP~lv~ga~ASSApv 163 (472)
T 4ebb_A 115 LLRALRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPV 163 (472)
T ss_dssp HHHHHHHHTTCTTCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETCCT
T ss_pred HHHHHHhhcCCCCCCEEEEccCccchhhHHHHhhCCCeEEEEEecccce
Confidence 9999887755556799999999999999999999999999988877643
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0094 Score=62.60 Aligned_cols=152 Identities=11% Similarity=0.061 Sum_probs=83.3
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhh
Q 003363 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (826)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (826)
...|+++|.++|++....+...-..+..++++|||+ |+++.. ....|+++|.
T Consensus 68 ~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-----l~v~d~--------------~~~~v~~~~~--------- 119 (329)
T 3fvz_A 68 EDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-----YWVTDV--------------ALHQVFKLDP--------- 119 (329)
T ss_dssp SCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-----EEEEET--------------TTTEEEEECT---------
T ss_pred CCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC-----EEEEEC--------------CCCEEEEEeC---------
Confidence 468999999988876552222223567889999998 655541 2236888886
Q ss_pred hhhhcCCCCCC--cceecC---------CCCccccCceecC-CCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCc
Q 003363 352 LELKESSSEDL--PVVNLT---------ESISSAFFPRFSP-DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 419 (826)
Q Consensus 352 ~~~~~~~~~~~--~~~~Lt---------~~~~~~~~p~~Sp-DG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~ 419 (826)
++. ....+. .........+++| +|+ |++.... ....|+++|.++ ....
T Consensus 120 --------~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-lyv~d~~---------~~~~I~~~~~~g-~~~~- 179 (329)
T 3fvz_A 120 --------HSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VFVSDGY---------CNSRIVQFSPSG-KFVT- 179 (329)
T ss_dssp --------TCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EEEEECS---------SCCEEEEECTTS-CEEE-
T ss_pred --------CCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EEEEeCC---------CCCeEEEEcCCC-CEEE-
Confidence 333 233331 1122355678999 555 4444421 125788998433 2211
Q ss_pred ccceeeeeeeeeccCCCC--CcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003363 420 LEKIVDVIPVVQCAEGDC--FPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 483 (826)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~--f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~l 483 (826)
.+.....+. -++ ....+..++++||+..||++. .+...|.++|+++|+....
T Consensus 180 ---------~~~~~g~~~~~~~~-~~~~p~gia~d~~~g~l~v~d--~~~~~I~~~~~~~G~~~~~ 233 (329)
T 3fvz_A 180 ---------QWGEESSGSSPRPG-QFSVPHSLALVPHLDQLCVAD--RENGRIQCFKTDTKEFVRE 233 (329)
T ss_dssp ---------EECEECCSSSCCTT-EESCEEEEEEETTTTEEEEEE--TTTTEEEEEETTTCCEEEE
T ss_pred ---------EeccCCCCCCCCCc-ccCCCcEEEEECCCCEEEEEE--CCCCEEEEEECCCCcEEEE
Confidence 010000000 000 001234678899966677764 3444677888886776544
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.015 Score=59.57 Aligned_cols=234 Identities=11% Similarity=0.064 Sum_probs=123.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
......+++|||+ |++.... ...++.+...+...... ..... . ...++.++|||+ |++...
T Consensus 15 ~~~~~i~~d~~g~-l~v~~~~---~~~v~~~d~~~~~~~~~-~~~~~-~------~~~~i~~~~~g~-l~v~~~------ 75 (299)
T 2z2n_A 15 TGPYGITVSDKGK-VWITQHK---ANMISCINLDGKITEYP-LPTPD-A------KVMCLTISSDGE-VWFTEN------ 75 (299)
T ss_dssp CCEEEEEECTTSC-EEEEETT---TTEEEEECTTCCEEEEE-CSSTT-C------CEEEEEECTTSC-EEEEET------
T ss_pred CCccceEECCCCC-EEEEecC---CCcEEEEcCCCCeEEec-CCccc-C------ceeeEEECCCCC-EEEeCC------
Confidence 3577889999997 3333221 22466555334433322 22111 1 126788999987 444321
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCC-CCCccceEEEeeCCCCCccE
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~-~~~~~~~~~wSPDg~~~~~~ 312 (826)
....|+++|.+ ++.+.+. .+ ....+..+++.|||+
T Consensus 76 -------------------------------------~~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~~~~g~----- 111 (299)
T 2z2n_A 76 -------------------------------------AANKIGRITKK-GIIKEYT-LPNPDSAPYGITEGPNGD----- 111 (299)
T ss_dssp -------------------------------------TTTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSC-----
T ss_pred -------------------------------------CCCeEEEECCC-CcEEEEe-CCCcCCCceeeEECCCCC-----
Confidence 12468888876 5554442 22 233566788899886
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceec--CCCCccccCceecCCCCEEEEEe
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL--TESISSAFFPRFSPDGKFLVFLS 390 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L--t~~~~~~~~p~~SpDG~~l~f~s 390 (826)
|++... ....|+++|. . +....+ ...........+++||+ |++..
T Consensus 112 l~v~~~--------------~~~~i~~~d~-----------------~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~ 158 (299)
T 2z2n_A 112 IWFTEM--------------NGNRIGRITD-----------------D-GKIREYELPNKGSYPSFITLGSDNA-LWFTE 158 (299)
T ss_dssp EEEEET--------------TTTEEEEECT-----------------T-CCEEEEECSSTTCCEEEEEECTTSC-EEEEE
T ss_pred EEEEec--------------CCceEEEECC-----------------C-CCEEEecCCCCCCCCceEEEcCCCC-EEEEe
Confidence 666541 1236888875 2 222222 22233456678899996 44433
Q ss_pred ccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEE
Q 003363 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470 (826)
Q Consensus 391 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l 470 (826)
.. ...|+++|. ++..... . .+.. . ..+..+.+.+||+ |+++. .....|
T Consensus 159 ~~----------~~~i~~~~~-~g~~~~~--------~---~~~~--~-----~~~~~i~~~~~g~-l~v~~--~~~~~i 206 (299)
T 2z2n_A 159 NQ----------NNAIGRITE-SGDITEF--------K---IPTP--A-----SGPVGITKGNDDA-LWFVE--IIGNKI 206 (299)
T ss_dssp TT----------TTEEEEECT-TCCEEEE--------E---CSST--T-----CCEEEEEECTTSS-EEEEE--TTTTEE
T ss_pred CC----------CCEEEEEcC-CCcEEEe--------e---CCCC--C-----CcceeEEECCCCC-EEEEc--cCCceE
Confidence 22 256899987 4332111 0 0000 0 0123566788887 66553 233468
Q ss_pred EEEECCCCcEEEecCCC--CCeeeEEEeecCCEEEEEEeCCCCCCeEEEEee
Q 003363 471 ISVNVSSGELLRITPAE--SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 520 (826)
Q Consensus 471 ~~vdl~tg~~~~lt~~~--~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 520 (826)
+++|. +++...+.... .......++++|+ +++.... ...|++++.
T Consensus 207 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~---~~~i~~~d~ 253 (299)
T 2z2n_A 207 GRITT-SGEITEFKIPTPNARPHAITAGAGID-LWFTEWG---ANKIGRLTS 253 (299)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECSTTC-EEEEETT---TTEEEEEET
T ss_pred EEECC-CCcEEEEECCCCCCCceeEEECCCCC-EEEeccC---CceEEEECC
Confidence 88898 77777653321 2233345566655 4444322 234666664
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0042 Score=73.10 Aligned_cols=161 Identities=10% Similarity=0.107 Sum_probs=102.6
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-----ceeEEEec-CCCccccccCCCcccceeecCCCCeEEEEee
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-----QLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAE 227 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~-----~~~~~~~~-~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~ 227 (826)
.....+++.+.+.+|+++... ...|+.+...+ ....++.. .... .++++.+.++.|+++-.
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~---~~~I~~~~l~g~~~~~~~~~vi~~~l~~P----------~GLAvD~~~~~LY~tD~ 490 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLS---QRMICSTQLDRAHGVSSYDTVISRDIQAP----------DGLAVDWIHSNIYWTDS 490 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETT---TTEEEEEEC--------CEEEECSSCSCC----------CEEEEETTTTEEEEEET
T ss_pred CceEEEeecccCCeeEEeecc---ceeEEEEeccCCCCCcceeEEEecCCCCc----------ceeeeeecCCcEEEEec
Confidence 346678888888888766432 23466666332 22333321 1122 58888888888877521
Q ss_pred cCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCC-CccceEEEeeCC
Q 003363 228 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLN 306 (826)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg 306 (826)
....|+++++++...+.+ .... ..+..++..|.+
T Consensus 491 -------------------------------------------~~~~I~v~~ldG~~~~~l--~~~~l~~P~gIaVDp~~ 525 (791)
T 3m0c_C 491 -------------------------------------------VLGTVSVADTKGVKRKTL--FRENGSKPRAIVVDPVH 525 (791)
T ss_dssp -------------------------------------------TTTEEEEEETTSSSEEEE--EECTTCCEEEEEEETTT
T ss_pred -------------------------------------------CCCeEEEEeCCCCeEEEE--EeCCCCCcceEEEecCC
Confidence 236899999988777666 3222 346788999987
Q ss_pred CCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCC-CCccccCceecCCCCE
Q 003363 307 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKF 385 (826)
Q Consensus 307 ~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~ 385 (826)
.. |+++-+.. ...|+++++ ++...+.|.. ........++.+++++
T Consensus 526 g~----LYwtD~g~-------------~~~I~~~~~-----------------dG~~~~~lv~~~l~~P~GLavD~~~~~ 571 (791)
T 3m0c_C 526 GF----MYWTDWGT-------------PAKIKKGGL-----------------NGVDIYSLVTENIQWPNGITLDLLSGR 571 (791)
T ss_dssp TE----EEEEECSS-------------SCEEEEEET-----------------TSCCEEEEECSSCSCEEEEEEETTTTE
T ss_pred CC----EEEecCCC-------------CCeEEEEec-----------------CCCceEEEEeCCCCCceEEEEecCCCe
Confidence 76 87765322 136899998 5555444433 3345667889999999
Q ss_pred EEEEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 386 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 386 l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
|+|.... ...|+++++++...
T Consensus 572 LYwaD~~----------~~~I~~~d~dG~~~ 592 (791)
T 3m0c_C 572 LYWVDSK----------LHSISSIDVNGGNR 592 (791)
T ss_dssp EEEEETT----------TTEEEEEETTSCSC
T ss_pred EEEEeCC----------CCcEEEEecCCCce
Confidence 9888643 25799999877543
|
| >1ivy_A Human protective protein; carboxypeptidase, serine carboxypeptidase, protective protei glycoprotein, zymogen; HET: NAG NDG; 2.20A {Homo sapiens} SCOP: c.69.1.5 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00027 Score=77.32 Aligned_cols=126 Identities=21% Similarity=0.207 Sum_probs=76.4
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHH------------H------HHCCcEEEEECC-CCCC
Q 003363 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAF------------L------SSVGYSLLIVNY-RGSL 633 (826)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~------------l------a~~G~~Vl~~d~-rG~~ 633 (826)
+..+..|++...+ .....|+||++||||+.... + ..... + =.+-..++-+|. +|.|
T Consensus 31 ~~~lfy~f~~s~~--~~~~~Pl~lwlnGGPG~Ss~--~-g~~~e~GP~~~~~~~~~l~~n~~sw~~~~~~lfiDqP~GtG 105 (452)
T 1ivy_A 31 SKHLHYWFVESQK--DPENSPVVLWLNGGPGCSSL--D-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVG 105 (452)
T ss_dssp TEEEEEEEECCSS--CGGGSCEEEEECCTTTBCTH--H-HHHTTTSSEEECTTSSCEEECTTCGGGSSEEEEECCSTTST
T ss_pred CCeEEEEEEEcCC--CCCCCCEEEEECCCCcHHHH--H-HHHHhcCCcEEeCCCceeeeCCCcccccccEEEEecCCCCC
Confidence 4678878776442 33568999999999987431 1 11110 0 013468999995 6644
Q ss_pred CCchhhhhcCCCCCCc---chHHHHHHHH-HHHHHcCCCCCCcEEEEEecchHHHHHHHHHh----CCCceeEEEecCCc
Q 003363 634 GFGEEALQSLPGKVGS---QDVNDVLTAI-DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ----APDKFVAAAARNPL 705 (826)
Q Consensus 634 g~G~~~~~~~~~~~~~---~~~~D~~~~i-~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~----~p~~~~a~v~~~p~ 705 (826)
+.... ...+.. ...+|+..++ +|+.+.+....+++.|+|+|+||..+..+|.. .+-.++++++.+|+
T Consensus 106 -fS~~~----~~~~~~~~~~~a~~~~~~l~~f~~~~p~~~~~~~~i~GeSYgG~y~p~la~~i~~~~~~~l~g~~ign~~ 180 (452)
T 1ivy_A 106 -FSYSD----DKFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGL 180 (452)
T ss_dssp -TCEES----SCCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEESCC
T ss_pred -cCCcC----CCCCcCCcHHHHHHHHHHHHHHHHhcHHhcCCCEEEEeeccceeehHHHHHHHHhcCccccceEEecCCc
Confidence 33211 111211 1244444444 44444444556889999999999966555542 34578999999998
Q ss_pred cch
Q 003363 706 CNL 708 (826)
Q Consensus 706 ~~~ 708 (826)
++.
T Consensus 181 ~d~ 183 (452)
T 1ivy_A 181 SSY 183 (452)
T ss_dssp SBH
T ss_pred cCh
Confidence 764
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0055 Score=70.36 Aligned_cols=204 Identities=11% Similarity=0.051 Sum_probs=122.6
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCce--eEEEecC-CCccccccCCCcccceeecCCCCeEEEEeecCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL--EKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~--~~~~~~~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~ 230 (826)
.......+++++.+|+++... ...++.+...+.. ..+.... ... .++++.+.++.|++.-.
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~---~~~I~r~~~~g~~~~~~v~~~~~~~P----------~GlAvD~~~~~ly~~d~--- 103 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVS---EEAIKRTEFNKTESVQNVVVSGLLSP----------DGLACDWLGEKLYWTDS--- 103 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETT---TTEEEEEEC-----CEEEECSSCSCE----------EEEEEETTTTEEEEEET---
T ss_pred CceEEEEEEeCCCEEEEEECC---CCeEEEEEccCCCceEEEEeCCCCCc----------CeEEEEecCCEEEEEeC---
Confidence 356788999999988776432 2356666633332 2222211 122 68889998888877522
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003363 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
....|.+.++++...+.+. ...-..+.+++..|.+..
T Consensus 104 ----------------------------------------~~~~I~v~~~dG~~~~~l~-~~~l~~P~~Iavdp~~g~-- 140 (619)
T 3s94_A 104 ----------------------------------------ETNRIEVSNLDGSLRKVLF-WQELDQPRAIALDPSSGF-- 140 (619)
T ss_dssp ----------------------------------------TTTEEEEEETTSCSCEEEE-CSSCSCCCCEEEETTTTE--
T ss_pred ----------------------------------------CCCEEEEEECCCCCEEEEE-eCCCCCCceEEEecCCCe--
Confidence 2367999999887766662 122235678899998776
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecC-CCCccccCceecCCCCEEEEE
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFL 389 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~l~f~ 389 (826)
|+|+-+.. ...|++.++ ++...+.+. .........++++++++|++.
T Consensus 141 --ly~tD~g~-------------~~~I~r~~~-----------------dG~~~~~l~~~~~~~P~Glald~~~~~LY~a 188 (619)
T 3s94_A 141 --MYWTDWGE-------------VPKIERAGM-----------------DGSSRFIIINSEIYWPNGLTLDYEEQKLYWA 188 (619)
T ss_dssp --EEEEECSS-------------SCEEEEEET-----------------TSCSCEEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred --EEEeccCC-------------CCEEEEEEC-----------------CCCceEEEEeCCCCCCcEEEEEccCCEEEEE
Confidence 88776432 236889987 554444443 333445677899999999888
Q ss_pred eccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEE
Q 003363 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (826)
Q Consensus 390 s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (826)
... ...|+++|+++...+.+..+. +. ....+++..| .||++ + .....
T Consensus 189 D~~----------~~~I~~~~~dG~~~~~~~~~~--------------~~-----~P~gi~~~~~--~ly~t-d-~~~~~ 235 (619)
T 3s94_A 189 DAK----------LNFIHKSNLDGTNRQAVVKGS--------------LP-----HPFALTLFED--ILYWT-D-WSTHS 235 (619)
T ss_dssp ETT----------TCCEEEESSSCCEEC----------------------------CCCEEESSS--EEEEE-C-TTTCS
T ss_pred eCC----------CCeEEEecCCCCccEEEEeCC--------------CC-----CceEEEEeCC--EEEEe-c-CCCCE
Confidence 644 257999998875443322110 00 1123444433 67665 2 34557
Q ss_pred EEEEECCCCcEE
Q 003363 470 IISVNVSSGELL 481 (826)
Q Consensus 470 l~~vdl~tg~~~ 481 (826)
|+++|..+|+..
T Consensus 236 V~~~d~~tg~~~ 247 (619)
T 3s94_A 236 ILACNKYTGEGL 247 (619)
T ss_dssp EEEEESSSCCCC
T ss_pred EEEEECCCCccc
Confidence 889998877644
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.019 Score=65.87 Aligned_cols=178 Identities=10% Similarity=-0.022 Sum_probs=110.0
Q ss_pred ceEEEEEccCCceEeccCCCCC-CccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (826)
..|++++++++.++.+ .... ..+..++..+.++. |+++-. ....|.++++
T Consensus 59 ~~I~r~~~~g~~~~~v--~~~g~~~P~GlAvD~~~~~----LY~tD~--------------~~~~I~v~~~--------- 109 (628)
T 4a0p_A 59 KTISRAFMNGSALEHV--VEFGLDYPEGMAVDWLGKN----LYWADT--------------GTNRIEVSKL--------- 109 (628)
T ss_dssp TEEEEEETTSCSCEEE--ECSSCSCCCEEEEETTTTE----EEEEET--------------TTTEEEEEET---------
T ss_pred CeEEEEECCCCCcEEE--EeCCCCCcceEEEEeCCCE----EEEEEC--------------CCCEEEEEec---------
Confidence 6799999988776655 2222 35667888888887 877642 2237899997
Q ss_pred hhhhcCCCCCCcceecC-CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeee
Q 003363 352 LELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (826)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 430 (826)
++...+.|. .........++.|...+|+|.... ...+|+++++++.....+...
T Consensus 110 --------dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g---------~~~~I~r~~~dG~~~~~l~~~-------- 164 (628)
T 4a0p_A 110 --------DGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG---------GKPKIDRAAMDGSERTTLVPN-------- 164 (628)
T ss_dssp --------TSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS---------SSCEEEEEETTSCSCEEEECS--------
T ss_pred --------CCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC---------CCCEEEEEeCCCCceEEEECC--------
Confidence 555444443 333445677889977788776532 135799999887554322110
Q ss_pred eccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCC
Q 003363 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPV 510 (826)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~ 510 (826)
+ .....++++++++.||++- .....|+++|++++..+.+..... .-..++.+++.+|++-..
T Consensus 165 -------~-----~~P~GlalD~~~~~LY~aD--~~~~~I~~~d~dG~~~~v~~~~l~--~P~glav~~~~ly~tD~~-- 226 (628)
T 4a0p_A 165 -------V-----GRANGLTIDYAKRRLYWTD--LDTNLIESSNMLGLNREVIADDLP--HPFGLTQYQDYIYWTDWS-- 226 (628)
T ss_dssp -------C-----SSEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEEECCS--CEEEEEEETTEEEEEETT--
T ss_pred -------C-----CCcceEEEccccCEEEEEE--CCCCEEEEEcCCCCceEEeeccCC--CceEEEEECCEEEEecCC--
Confidence 0 0223567888888898864 344578999998776654433221 122455567777766532
Q ss_pred CCCeEEEEeeccc
Q 003363 511 DVPQVKYGYFVDK 523 (826)
Q Consensus 511 ~p~~l~~~~~~~~ 523 (826)
...|+.++..++
T Consensus 227 -~~~I~~~dk~tg 238 (628)
T 4a0p_A 227 -RRSIERANKTSG 238 (628)
T ss_dssp -TTEEEEEETTTC
T ss_pred -CCEEEEEECCCC
Confidence 335777775433
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0034 Score=62.56 Aligned_cols=200 Identities=12% Similarity=0.025 Sum_probs=110.6
Q ss_pred EEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 003363 157 SAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (826)
Q Consensus 157 ~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~ 235 (826)
....++ || . +|.+....+...+..++ ..++..+...++... .+....++|++|+.+..
T Consensus 46 qGL~~~-~~-~-LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~----------FgeGit~~g~~ly~ltw-------- 104 (262)
T 3nol_A 46 EGFFYR-NG-Y-FYESTGLNGRSSIRKVDIESGKTLQQIELGKRY----------FGEGISDWKDKIVGLTW-------- 104 (262)
T ss_dssp EEEEEE-TT-E-EEEEEEETTEEEEEEECTTTCCEEEEEECCTTC----------CEEEEEEETTEEEEEES--------
T ss_pred ceEEEE-CC-E-EEEECCCCCCceEEEEECCCCcEEEEEecCCcc----------ceeEEEEeCCEEEEEEe--------
Confidence 345666 54 4 46665544556788888 677777777665443 23335567887866522
Q ss_pred ccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEE
Q 003363 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 315 (826)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf 315 (826)
....++++|.++.++..- ++... .....++||+. |+.
T Consensus 105 -----------------------------------~~~~v~v~D~~t~~~~~t--i~~~~--eG~glt~dg~~----L~~ 141 (262)
T 3nol_A 105 -----------------------------------KNGLGFVWNIRNLRQVRS--FNYDG--EGWGLTHNDQY----LIM 141 (262)
T ss_dssp -----------------------------------SSSEEEEEETTTCCEEEE--EECSS--CCCCEEECSSC----EEE
T ss_pred -----------------------------------eCCEEEEEECccCcEEEE--EECCC--CceEEecCCCE----EEE
Confidence 237899999998876533 12111 23456689986 644
Q ss_pred EeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCC--CCcc---ccCceecCCCCEEEEE
Q 003363 316 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTE--SISS---AFFPRFSPDGKFLVFL 389 (826)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~--~~~~---~~~p~~SpDG~~l~f~ 389 (826)
++ ....|+.+|. ++.+ ..++.- .... .....|. ||+ | |.
T Consensus 142 -Sd--------------Gs~~i~~iDp-----------------~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-l-ya 186 (262)
T 3nol_A 142 -SD--------------GTPVLRFLDP-----------------ESLTPVRTITVTAHGEELPELNELEWV-DGE-I-FA 186 (262)
T ss_dssp -CC--------------SSSEEEEECT-----------------TTCSEEEEEECEETTEECCCEEEEEEE-TTE-E-EE
T ss_pred -EC--------------CCCeEEEEcC-----------------CCCeEEEEEEeccCCccccccceeEEE-CCE-E-EE
Confidence 42 2337999997 4443 233322 1111 1224565 774 4 44
Q ss_pred eccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCC--CCcccccCCCCCCccccCCCEEEEEEEeCCe
Q 003363 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD--CFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 467 (826)
Q Consensus 390 s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 467 (826)
..- ....|.++|..+++... .+++-...... ..+ -...+..++|+|++++||++. ...
T Consensus 187 n~w---------~~~~I~vIDp~tG~V~~-------~Id~~~L~~~~~~~~~--~~~vlNGIA~dp~~~~lfVTG--K~W 246 (262)
T 3nol_A 187 NVW---------QTNKIVRIDPETGKVTG-------IIDLNGILAEAGPLPS--PIDVLNGIAWDKEHHRLFVTG--KLW 246 (262)
T ss_dssp EET---------TSSEEEEECTTTCBEEE-------EEECTTGGGGSCSCCS--SCCCEEEEEEETTTTEEEEEE--TTC
T ss_pred EEc---------cCCeEEEEECCCCcEEE-------EEECCcCccccccccC--cCCceEEEEEcCCCCEEEEEC--CCC
Confidence 432 23689999998876521 11110000000 000 011345789999999888764 445
Q ss_pred EEEEEEEC
Q 003363 468 QVIISVNV 475 (826)
Q Consensus 468 ~~l~~vdl 475 (826)
..+|.|.+
T Consensus 247 p~~~ev~~ 254 (262)
T 3nol_A 247 PKVFEITL 254 (262)
T ss_dssp SEEEEEEE
T ss_pred CceEEEEE
Confidence 57777654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0056 Score=62.64 Aligned_cols=94 Identities=9% Similarity=0.045 Sum_probs=54.0
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
..|+++|.++.....+........+..++++|||+ |+++.. ....|+++|.
T Consensus 142 ~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~-----l~v~~~--------------~~~~i~~~~~---------- 192 (286)
T 1q7f_A 142 MRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE-----IFISDN--------------RAHCVKVFNY---------- 192 (286)
T ss_dssp TEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE-----EEEEEG--------------GGTEEEEEET----------
T ss_pred CEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCC-----EEEEEC--------------CCCEEEEEcC----------
Confidence 56888887655444442111223467889999987 555431 1236888886
Q ss_pred hhhcCCCCCCcceecCCC--CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCC
Q 003363 353 ELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 412 (826)
Q Consensus 353 ~~~~~~~~~~~~~~Lt~~--~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~ 412 (826)
.+.....+... ........++|||+ |+ ++... ....|.++|..
T Consensus 193 -------~g~~~~~~~~~g~~~~p~~i~~d~~G~-l~-v~~~~--------~~~~i~~~~~~ 237 (286)
T 1q7f_A 193 -------EGQYLRQIGGEGITNYPIGVGINSNGE-IL-IADNH--------NNFNLTIFTQD 237 (286)
T ss_dssp -------TCCEEEEESCTTTSCSEEEEEECTTCC-EE-EEECS--------SSCEEEEECTT
T ss_pred -------CCCEEEEEccCCccCCCcEEEECCCCC-EE-EEeCC--------CCEEEEEECCC
Confidence 44444444322 23456778999996 33 33221 11268899854
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0095 Score=61.68 Aligned_cols=161 Identities=12% Similarity=0.202 Sum_probs=93.8
Q ss_pred ccEEEEeCCCCCeEEEEecCCC------------CCCeEEEEecCCceeEEEecCCCccccccCCCcccceeec----CC
Q 003363 155 GASAVVPSPSGSKLLVVRNPEN------------ESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWN----SD 218 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~------------~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wS----PD 218 (826)
.....+++|+|+ |++.....+ ....++.+...++...+....... .++.|+ ||
T Consensus 118 ~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~----------~~i~~~~~~d~d 186 (314)
T 1pjx_A 118 GCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFP----------NGIAVRHMNDGR 186 (314)
T ss_dssp CCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSE----------EEEEEEECTTSC
T ss_pred CCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCCCc----------ceEEEecccCCC
Confidence 467889999996 444432210 113566666445554443321222 578899 99
Q ss_pred CCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEcc-CCceE---eccCCCCC
Q 003363 219 ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGEVQ---AVKGIPKS 294 (826)
Q Consensus 219 g~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-~g~~~---~l~~~~~~ 294 (826)
|+.|++... ....|+++|++ +++.. .+...+..
T Consensus 187 g~~l~v~~~-------------------------------------------~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 223 (314)
T 1pjx_A 187 PYQLIVAET-------------------------------------------PTKKLWSYDIKGPAKIENKKVWGHIPGT 223 (314)
T ss_dssp EEEEEEEET-------------------------------------------TTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred CCEEEEEEC-------------------------------------------CCCeEEEEECCCCCccccceEEEECCCC
Confidence 987765422 12568888876 45422 11112222
Q ss_pred --CccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCC
Q 003363 295 --LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESI 371 (826)
Q Consensus 295 --~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~ 371 (826)
..+..+++++||+ |++... ....|+++|. ++++ ...+....
T Consensus 224 ~~~~p~~i~~d~~G~-----l~v~~~--------------~~~~i~~~d~-----------------~~g~~~~~~~~~~ 267 (314)
T 1pjx_A 224 HEGGADGMDFDEDNN-----LLVANW--------------GSSHIEVFGP-----------------DGGQPKMRIRCPF 267 (314)
T ss_dssp SSCEEEEEEEBTTCC-----EEEEEE--------------TTTEEEEECT-----------------TCBSCSEEEECSS
T ss_pred CCCCCCceEECCCCC-----EEEEEc--------------CCCEEEEEcC-----------------CCCcEeEEEeCCC
Confidence 3456789999996 665542 1236888886 4333 33333333
Q ss_pred ccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 372 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 372 ~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
.......|+|||++|+...... ..|+++++...+
T Consensus 268 ~~~~~i~~~~dg~~l~v~~~~~----------~~l~~~~~~~~g 301 (314)
T 1pjx_A 268 EKPSNLHFKPQTKTIFVTEHEN----------NAVWKFEWQRNG 301 (314)
T ss_dssp SCEEEEEECTTSSEEEEEETTT----------TEEEEEECSSCB
T ss_pred CCceeEEECCCCCEEEEEeCCC----------CeEEEEeCCCCC
Confidence 4567788999999876555432 469999887643
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.011 Score=58.42 Aligned_cols=178 Identities=14% Similarity=0.213 Sum_probs=100.8
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhh
Q 003363 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (826)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (826)
...|.++|+++|++..-...+.. ......+++++. |+-..| +...++++|.
T Consensus 42 ~S~v~~vD~~tgkv~~~~~l~~~--~fgeGi~~~~~~----ly~ltw--------------~~~~v~v~D~--------- 92 (243)
T 3mbr_X 42 RSSVRKVDLETGRILQRAEVPPP--YFGAGIVAWRDR----LIQLTW--------------RNHEGFVYDL--------- 92 (243)
T ss_dssp SCEEEEEETTTCCEEEEEECCTT--CCEEEEEEETTE----EEEEES--------------SSSEEEEEET---------
T ss_pred CceEEEEECCCCCEEEEEeCCCC--cceeEEEEeCCE----EEEEEe--------------eCCEEEEEEC---------
Confidence 47899999999998654212222 223345667776 766664 3347999998
Q ss_pred hhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeee
Q 003363 352 LELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (826)
Q Consensus 352 ~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 430 (826)
++.+ ..++.... ....+++||++|+ .|+. ..+|+.+|..+.+... -+++-
T Consensus 93 --------~tl~~~~ti~~~~---~Gwglt~dg~~L~-vSdg----------s~~l~~iDp~t~~~~~-------~I~V~ 143 (243)
T 3mbr_X 93 --------ATLTPRARFRYPG---EGWALTSDDSHLY-MSDG----------TAVIRKLDPDTLQQVG-------SIKVT 143 (243)
T ss_dssp --------TTTEEEEEEECSS---CCCEEEECSSCEE-EECS----------SSEEEEECTTTCCEEE-------EEECE
T ss_pred --------CcCcEEEEEeCCC---CceEEeeCCCEEE-EECC----------CCeEEEEeCCCCeEEE-------EEEEc
Confidence 4544 33443221 2345678998764 4532 3679999988754321 11111
Q ss_pred eccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC-------------CC-CeeeEEEe
Q 003363 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-------------ES-NFSWSLLT 496 (826)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~-------------~~-~~~~~~~s 496 (826)
.. ...+ ..+..+.|. ||+ || ...+. ...|.+||+++|++.....- .. .....+++
T Consensus 144 ~~--g~~~-----~~lNeLe~~-~G~-ly-anvw~-s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d 212 (243)
T 3mbr_X 144 AG--GRPL-----DNLNELEWV-NGE-LL-ANVWL-TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFD 212 (243)
T ss_dssp ET--TEEC-----CCEEEEEEE-TTE-EE-EEETT-TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEE
T ss_pred cC--Cccc-----ccceeeEEe-CCE-EE-EEECC-CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEc
Confidence 00 0000 012234454 664 65 44444 33799999999998754321 11 22445677
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEeec
Q 003363 497 LDGDNIIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 497 ~dg~~l~~~~s~~~~p~~l~~~~~~ 521 (826)
++++.++.+.-.. |.+|-+.+.
T Consensus 213 ~~~~~lfVTGK~w---p~~~~v~~~ 234 (243)
T 3mbr_X 213 AEHDRLFVTGKRW---PMLYEIRLT 234 (243)
T ss_dssp TTTTEEEEEETTC---SEEEEEEEC
T ss_pred CCCCEEEEECCCC---CcEEEEEEe
Confidence 7888877777655 346655543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.004 Score=63.72 Aligned_cols=185 Identities=14% Similarity=0.098 Sum_probs=98.8
Q ss_pred CccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccch
Q 003363 269 GKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 348 (826)
Q Consensus 269 ~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 348 (826)
+.....|+++|.++|++..-...........+.++|||+ |++.. . ..|+.+|.
T Consensus 11 ~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~-----ilvs~-~---------------~~V~~~d~------ 63 (276)
T 3no2_A 11 GSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGE-----ILFSY-S---------------KGAKMITR------ 63 (276)
T ss_dssp CTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSC-----EEEEC-B---------------SEEEEECT------
T ss_pred eCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCC-----EEEeC-C---------------CCEEEECC------
Confidence 345689999999888876542122213567889999998 44432 1 14677775
Q ss_pred hhhhhhhcCCCCCCcceecCCC-CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeee
Q 003363 349 ASELELKESSSEDLPVVNLTES-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 427 (826)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~Lt~~-~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 427 (826)
++....++..+ ......+.++|||+.|+-.+.. ...|+.+|.++......
T Consensus 64 -----------~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~----------~~~v~~vd~~Gk~l~~~-------- 114 (276)
T 3no2_A 64 -----------DGRELWNIAAPAGCEMQTARILPDGNALVAWCGH----------PSTILEVNMKGEVLSKT-------- 114 (276)
T ss_dssp -----------TSCEEEEEECCTTCEEEEEEECTTSCEEEEEEST----------TEEEEEECTTSCEEEEE--------
T ss_pred -----------CCCEEEEEcCCCCccccccEECCCCCEEEEecCC----------CCEEEEEeCCCCEEEEE--------
Confidence 33344444432 2245567899999987654431 24677777533111111
Q ss_pred eeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEe
Q 003363 428 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 507 (826)
Q Consensus 428 ~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s 507 (826)
..... ..+ ..........++||+.|+. . .....++.+|.+ |+...-.............++|+.++...
T Consensus 115 ---~~~~~--~~~-~~~~~~~v~~~~~G~~lv~-~--~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~- 183 (276)
T 3no2_A 115 ---EFETG--IER-PHAQFRQINKNKKGNYLVP-L--FATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACG- 183 (276)
T ss_dssp ---EECCS--CSS-GGGSCSCCEECTTSCEEEE-E--TTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECB-
T ss_pred ---eccCC--CCc-ccccccCceECCCCCEEEE-e--cCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeC-
Confidence 00000 000 0001234467889986543 2 344578889988 66544332222122234555666554332
Q ss_pred CCCCCCeEEEEeeccc
Q 003363 508 SPVDVPQVKYGYFVDK 523 (826)
Q Consensus 508 ~~~~p~~l~~~~~~~~ 523 (826)
. ..+|+.++..++
T Consensus 184 ~---~~~v~~~d~~tG 196 (276)
T 3no2_A 184 D---AHCFVQLNLESN 196 (276)
T ss_dssp T---TSEEEEECTTTC
T ss_pred C---CCeEEEEeCcCC
Confidence 2 235777775543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.047 Score=55.65 Aligned_cols=172 Identities=11% Similarity=0.017 Sum_probs=92.0
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
..|+++|.+ ++.+.+........+..+++.|+|+ |++... ....|+++|.
T Consensus 83 ~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~-----l~v~~~--------------~~~~i~~~~~---------- 132 (300)
T 2qc5_A 83 NKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGD-----IWFTQL--------------NGDRIGKLTA---------- 132 (300)
T ss_dssp TEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTC-----EEEEET--------------TTTEEEEECT----------
T ss_pred CeEEEECCC-CCeEEecCCCCCCCCccceECCCCC-----EEEEcc--------------CCCeEEEECC----------
Confidence 568888887 6665442111223566788888886 665541 1236888886
Q ss_pred hhhcCCCCCCcceec--CCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeee
Q 003363 353 ELKESSSEDLPVVNL--TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (826)
Q Consensus 353 ~~~~~~~~~~~~~~L--t~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 430 (826)
+ ++...+ ...........+.+||+ |++.... ...|+++|. ++.....
T Consensus 133 -------~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~----------~~~i~~~~~-~g~~~~~----------- 181 (300)
T 2qc5_A 133 -------D-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQ----------NNSIGRITN-TGKLEEY----------- 181 (300)
T ss_dssp -------T-SCEEEEECSSTTCCEEEEEECTTSS-EEEEETT----------TTEEEEECT-TCCEEEE-----------
T ss_pred -------C-CCEEEccCCCCCCCceeEEECCCCC-EEEEecC----------CCeEEEECC-CCcEEEe-----------
Confidence 4 443322 22233456678899998 4443322 246899987 3332110
Q ss_pred eccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC--CCCeeeEEEeecCCEEEEEEeC
Q 003363 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA--ESNFSWSLLTLDGDNIIAVSSS 508 (826)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~--~~~~~~~~~s~dg~~l~~~~s~ 508 (826)
..+... ..+..+.+.+||+ |+++.. ....|+++|. +++...+... ........++++|+ +++....
T Consensus 182 ~~~~~~-------~~~~~i~~d~~g~-l~v~~~--~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~ 249 (300)
T 2qc5_A 182 PLPTNA-------AAPVGITSGNDGA-LWFVEI--MGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSE-IWFTEWG 249 (300)
T ss_dssp ECSSTT-------CCEEEEEECTTSS-EEEEET--TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC-EEEEETT
T ss_pred eCCCCC-------CCcceEEECCCCC-EEEEcc--CCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCC-EEEeccC
Confidence 001000 0123556778886 666532 3346888888 6676665322 12233344566655 4444322
Q ss_pred CCCCCeEEEEee
Q 003363 509 PVDVPQVKYGYF 520 (826)
Q Consensus 509 ~~~p~~l~~~~~ 520 (826)
...|+.++.
T Consensus 250 ---~~~i~~~~~ 258 (300)
T 2qc5_A 250 ---ANQIGRITN 258 (300)
T ss_dssp ---TTEEEEECT
T ss_pred ---CCeEEEECC
Confidence 234666664
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0079 Score=63.65 Aligned_cols=68 Identities=9% Similarity=0.176 Sum_probs=37.4
Q ss_pred cccEEEEeCCCCCeEEEEecCC--CCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEE
Q 003363 154 TGASAVVPSPSGSKLLVVRNPE--NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 225 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~--~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~ 225 (826)
..+...+++|+|+ |+++.... .....++.++ .+++..+.+.++.... .......++.++|++..+++.
T Consensus 67 ~~p~gv~~d~~g~-L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~---~~~~~~~~v~vd~~~g~~yvt 137 (343)
T 2qe8_A 67 DTVLGIKSDGNGI-VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPIT---LSNSFVNDLAVDLIHNFVYIS 137 (343)
T ss_dssp SCEEEEEECSSSE-EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTS---CTTCCCCEEEEETTTTEEEEE
T ss_pred eEeeEEEEcCCCc-EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhc---ccccccceEEEecCCCEEEEE
Confidence 4578899999986 55543210 0134577666 4566555555432210 001123688999987655443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.076 Score=60.84 Aligned_cols=161 Identities=12% Similarity=0.065 Sum_probs=102.6
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecC-CCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
......+.+.+.+|++.... ...++.+.. +...+.+.... ... .++++.+.++.|++.-.
T Consensus 350 ~~~~ld~d~~~~~ly~sD~~---~~~I~r~~~~g~~~~~v~~~~~~~p----------~GlAvD~~~~~lY~tD~----- 411 (619)
T 3s94_A 350 HAIAIDYDPVEGYIYWTDDE---VRAIRRSFIDGSGSQFVVTAQIAHP----------DGIAVDWVARNLYWTDT----- 411 (619)
T ss_dssp SEEEEEEETTTTEEEEEETT---TTEEEEEETTSCSCEEEECSSCSCC----------CEEEEETTTTEEEEEET-----
T ss_pred ccEEEEEEcCCCeEEEEeCC---CCeEEEEEcCCCccEEEEECCCCCc----------CceEEecccCcEEEEeC-----
Confidence 46677888888888776432 335777763 33444443221 122 57888887887876521
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (826)
....|.+.++++...+.+. ...-..+.+++..|....
T Consensus 412 --------------------------------------~~~~I~v~~~~G~~~~~l~-~~~l~~P~~iavdp~~G~---- 448 (619)
T 3s94_A 412 --------------------------------------GTDRIEVTRLNGTMRKILI-SEDLEEPRAIVLDPMVGY---- 448 (619)
T ss_dssp --------------------------------------TTTEEEEEETTSCSCEEEE-CTTCCSEEEEEEETTTTE----
T ss_pred --------------------------------------CCCcEEEEeCCCCeEEEEE-ECCCCCeeeEEEEcCCCc----
Confidence 2367999999877666662 122235678899997665
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCC-CCccccCceecCCCCEEEEEec
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSA 391 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~l~f~s~ 391 (826)
|+|+-+.. ...|+++++ ++...+.|.. ........++++++++|++...
T Consensus 449 ly~tD~g~-------------~~~I~r~~~-----------------dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~ 498 (619)
T 3s94_A 449 MYWTDWGE-------------IPKIERAAL-----------------DGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDA 498 (619)
T ss_dssp EEEEECSS-------------SCEEEEEET-----------------TSCSCEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred EEEecCCC-------------CCEEEEEcc-----------------CCCccEEEEeCCCCCCeeeEEcccCCEEEEEEC
Confidence 77775422 236888887 4444444433 3445567789999999988865
Q ss_pred cCCCCCCCCcccceEEEEeCCCCCC
Q 003363 392 KSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 392 ~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
.. ..|..+++++...
T Consensus 499 ~~----------~~I~~~~~dG~~~ 513 (619)
T 3s94_A 499 KT----------DKIEVMNTDGTGR 513 (619)
T ss_dssp TT----------TEEEEEESSSCCC
T ss_pred CC----------CEEEEEecCCCce
Confidence 42 5799999877544
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.012 Score=58.69 Aligned_cols=167 Identities=13% Similarity=0.018 Sum_probs=94.5
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
..|.++|+++|++..-. .+.. ......+++|+. |+...|. ...++++|.
T Consensus 75 g~v~~iD~~Tgkv~~~~-l~~~--~FgeGit~~g~~----Ly~ltw~--------------~~~v~V~D~---------- 123 (268)
T 3nok_A 75 GTLRQLSLESAQPVWME-RLGN--IFAEGLASDGER----LYQLTWT--------------EGLLFTWSG---------- 123 (268)
T ss_dssp TEEEECCSSCSSCSEEE-ECTT--CCEEEEEECSSC----EEEEESS--------------SCEEEEEET----------
T ss_pred CEEEEEECCCCcEEeEE-CCCC--cceeEEEEeCCE----EEEEEcc--------------CCEEEEEEC----------
Confidence 34999999999876541 2222 222335778888 8777653 337999998
Q ss_pred hhhcCCCCCCcc-eecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeee
Q 003363 353 ELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 431 (826)
Q Consensus 353 ~~~~~~~~~~~~-~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 431 (826)
++.+. .++... ......++||++|+ .++. ...|+.+|..+.+... -+++-.
T Consensus 124 -------~Tl~~~~ti~~~---~eGwGLt~Dg~~L~-vSdG----------s~~l~~iDp~T~~v~~-------~I~V~~ 175 (268)
T 3nok_A 124 -------MPPQRERTTRYS---GEGWGLCYWNGKLV-RSDG----------GTMLTFHEPDGFALVG-------AVQVKL 175 (268)
T ss_dssp -------TTTEEEEEEECS---SCCCCEEEETTEEE-EECS----------SSEEEEECTTTCCEEE-------EEECEE
T ss_pred -------CcCcEEEEEeCC---CceeEEecCCCEEE-EECC----------CCEEEEEcCCCCeEEE-------EEEeCC
Confidence 55443 344322 12345568998765 4432 3679999988755321 111111
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC--------------CCeeeEEEee
Q 003363 432 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE--------------SNFSWSLLTL 497 (826)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~--------------~~~~~~~~s~ 497 (826)
.+ ..+ ..+..+.|. || .||+ ..+. ...|.+||+++|++.....-. ......++++
T Consensus 176 ~g--~~v-----~~lNeLe~~-dG-~lya-nvw~-s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp 244 (268)
T 3nok_A 176 RG--QPV-----ELINELECA-NG-VIYA-NIWH-SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEP 244 (268)
T ss_dssp TT--EEC-----CCEEEEEEE-TT-EEEE-EETT-CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECT
T ss_pred CC--ccc-----ccccccEEe-CC-EEEE-EECC-CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcC
Confidence 00 000 012345566 77 4664 3444 348999999999987543211 1223346677
Q ss_pred cCCEEEEEEeCC
Q 003363 498 DGDNIIAVSSSP 509 (826)
Q Consensus 498 dg~~l~~~~s~~ 509 (826)
+++.|+.+.-..
T Consensus 245 ~~~rlfVTGK~W 256 (268)
T 3nok_A 245 GSGRIFMTGKLW 256 (268)
T ss_dssp TTCCEEEEETTC
T ss_pred CCCEEEEeCCCC
Confidence 777766665444
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.044 Score=54.70 Aligned_cols=202 Identities=10% Similarity=0.162 Sum_probs=109.9
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (826)
++++|.||+++|+.+.+.. +.|+.+|+++...+.+.
T Consensus 30 SGla~~~~~~~L~aV~d~~-------------------------------------------~~I~~ld~~g~v~~~i~- 65 (255)
T 3qqz_A 30 SSLTWSAQSNTLFSTINKP-------------------------------------------AAIVEMTTNGDLIRTIP- 65 (255)
T ss_dssp EEEEEETTTTEEEEEEETT-------------------------------------------EEEEEEETTCCEEEEEE-
T ss_pred ceeEEeCCCCEEEEEECCC-------------------------------------------CeEEEEeCCCCEEEEEe-
Confidence 8999999998888776542 67999999843334442
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc---ceec
Q 003363 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VVNL 367 (826)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~L 367 (826)
..+......+++.++|+ ++.+. + +...|+.++++. .+. ....
T Consensus 66 l~g~~D~EGIa~~~~g~-----~~vs~-E-------------~~~~l~~~~v~~----------------~~~i~~~~~~ 110 (255)
T 3qqz_A 66 LDFVKDLETIEYIGDNQ-----FVISD-E-------------RDYAIYVISLTP----------------NSEVKILKKI 110 (255)
T ss_dssp CSSCSSEEEEEECSTTE-----EEEEE-T-------------TTTEEEEEEECT----------------TCCEEEEEEE
T ss_pred cCCCCChHHeEEeCCCE-----EEEEE-C-------------CCCcEEEEEcCC----------------CCeeeeeeee
Confidence 23334556778877665 44333 2 223577776631 111 1111
Q ss_pred ------CCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeC-CCCCCCCcccceeeeeeeeeccCCCCCcc
Q 003363 368 ------TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW-PTNGNFSSLEKIVDVIPVVQCAEGDCFPG 440 (826)
Q Consensus 368 ------t~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~g 440 (826)
...+......+|+|++++|+....+. ...||.++- .++. .++ +........ .
T Consensus 111 ~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~---------p~~i~~~~g~~~~~--~l~-----i~~~~~~~~-~---- 169 (255)
T 3qqz_A 111 KIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN---------PIEVYKVNGLLSSN--ELH-----ISKDKALQR-Q---- 169 (255)
T ss_dssp ECCCSSCCCSSCCEEEEEETTTTEEEEEEESS---------SEEEEEEESTTCSS--CCE-----EEECHHHHH-T----
T ss_pred ccccccccccCCcceEEEeCCCCEEEEEECcC---------CceEEEEcccccCC--cee-----eecchhhcc-c----
Confidence 12233457889999999887766553 246888871 0100 010 100000000 0
Q ss_pred cccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC---------CeeeEEEeecCCEEEEEEeCCCC
Q 003363 441 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES---------NFSWSLLTLDGDNIIAVSSSPVD 511 (826)
Q Consensus 441 ~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~---------~~~~~~~s~dg~~l~~~~s~~~~ 511 (826)
+.-..+..+++.|...++++.+. ....|..+|.++.-+..+.-..+ ......++++|+ +|.+ +.+
T Consensus 170 ~~~~d~S~l~~dp~tg~lliLS~--~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv-sE~-- 243 (255)
T 3qqz_A 170 FTLDDVSGAEFNQQKNTLLVLSH--ESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV-SEP-- 243 (255)
T ss_dssp CCSSCCCEEEEETTTTEEEEEET--TTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEE-ETT--
T ss_pred cccCCceeEEEcCCCCeEEEEEC--CCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEE-cCC--
Confidence 00113456778887777887764 33567888886543333333221 234456777775 5544 333
Q ss_pred CCeEEEEe
Q 003363 512 VPQVKYGY 519 (826)
Q Consensus 512 p~~l~~~~ 519 (826)
..+|+..
T Consensus 244 -n~~y~f~ 250 (255)
T 3qqz_A 244 -NRFYRFT 250 (255)
T ss_dssp -TEEEEEE
T ss_pred -ceEEEEE
Confidence 4566654
|
| >2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid synthase, drug complex, tetrahydrolipstatin, transferase; HET: DH9; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0012 Score=69.07 Aligned_cols=96 Identities=11% Similarity=0.054 Sum_probs=61.3
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (826)
+..+.|+++||.++. ...|..+...| ++.|+.+|+++.. + ...++++.+.+...++.. ..
T Consensus 44 ~~~~~l~~~hg~~g~--~~~~~~~~~~l---~~~v~~~~~~~~~----------~----~~~~~~~a~~~~~~i~~~-~~ 103 (316)
T 2px6_A 44 SSERPLFLVHPIEGS--TTVFHSLASRL---SIPTYGLQCTRAA----------P----LDSIHSLAAYYIDCIRQV-QP 103 (316)
T ss_dssp CSSCCEEEECCTTCC--SGGGHHHHHHC---SSCEEEECCCTTS----------C----TTCHHHHHHHHHHHHTTT-CS
T ss_pred CCCCeEEEECCCCCC--HHHHHHHHHhc---CCCEEEEECCCCC----------C----cCCHHHHHHHHHHHHHHh-CC
Confidence 345679999997654 45676666665 3899999998310 1 123555544443333331 12
Q ss_pred CCcEEEEEecchHHHHHHHHHhCC---Cc---eeEEEecCCc
Q 003363 670 PSKVTVVGGSHGGFLTTHLIGQAP---DK---FVAAAARNPL 705 (826)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~a~~~p---~~---~~a~v~~~p~ 705 (826)
..++.++|||+||.++..++.+.+ +. ++.+++.++.
T Consensus 104 ~~~~~l~G~S~Gg~va~~~a~~l~~~g~~~p~v~~l~li~~~ 145 (316)
T 2px6_A 104 EGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDGS 145 (316)
T ss_dssp SCCCEEEEETHHHHHHHHHHHHHHHHC---CCCCEEEEESCS
T ss_pred CCCEEEEEECHHHHHHHHHHHHHHHcCCcccccceEEEEcCC
Confidence 367999999999999999887653 34 7777765553
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.16 Score=53.43 Aligned_cols=109 Identities=15% Similarity=0.011 Sum_probs=65.0
Q ss_pred CceEEEEEccCCceEeccCCC--CCCccceEEEeeCCCCCccEEEEEeec--Ccceeeee-e-eeccCCCceEEEEcccc
Q 003363 272 QPSLFVININSGEVQAVKGIP--KSLSVGQVVWAPLNEGLHQYLVFVGWS--SETRKLGI-K-YCYNRPCALYAVRVSLY 345 (826)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~--~~~~~~~~~wSPDg~~~~~~lvf~~~~--~~~~~~g~-~-~~~~~~~~l~~~d~~~~ 345 (826)
...||.+|.+++..+.+.... .-....++...+||+ ++++..- .++.. +. . +.......||++|.
T Consensus 140 ~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-----fyvt~~~~ftd~~~-~~~e~~~~~~~g~vyr~d~--- 210 (355)
T 3sre_A 140 TVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-----FYATNDHYFIDPYL-KSWEMHLGLAWSFVTYYSP--- 210 (355)
T ss_dssp EEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-----EEEEESCSCSSHHH-HHHHHHTTCCCEEEEEECT---
T ss_pred eEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-----EEecCCcEeCCccc-ccchhhccCCccEEEEEEC---
Confidence 356888887776655543111 123567889999998 5554321 11000 00 0 00012357888874
Q ss_pred cchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 346 KSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
++.+.+..+......++|||||++|++.... ..+|++++++.++
T Consensus 211 ----------------~~~~~~~~~l~~pNGia~spDg~~lYvadt~----------~~~I~~~~~~~~g 254 (355)
T 3sre_A 211 ----------------NDVRVVAEGFDFANGINISPDGKYVYIAELL----------AHKIHVYEKHANW 254 (355)
T ss_dssp ----------------TCCEEEEEEESSEEEEEECTTSSEEEEEEGG----------GTEEEEEEECTTS
T ss_pred ----------------CeEEEeecCCcccCcceECCCCCEEEEEeCC----------CCeEEEEEECCCC
Confidence 2455555555556789999999998877754 2679999987533
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.1 Score=53.12 Aligned_cols=231 Identities=10% Similarity=0.009 Sum_probs=119.8
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
.....+++|+|+ |++... +...++.++..++... ...+... . ...++.++|+|+ |++...
T Consensus 63 ~~~~i~~~~~g~-l~v~~~---~~~~v~~~d~~g~~~~-~~~~~~~-~------~~~~i~~~~~g~-l~v~~~------- 122 (300)
T 2qc5_A 63 KVMCLIVSSLGD-IWFTEN---GANKIGKLSKKGGFTE-YPLPQPD-S------GPYGITEGLNGD-IWFTQL------- 122 (300)
T ss_dssp CEEEEEECTTSC-EEEEET---TTTEEEEECTTSCEEE-EECSSTT-C------CEEEEEECSTTC-EEEEET-------
T ss_pred cceeEEECCCCC-EEEEec---CCCeEEEECCCCCeEE-ecCCCCC-C------CCccceECCCCC-EEEEcc-------
Confidence 467788899997 433322 1234666664454432 2222111 1 125788888886 444321
Q ss_pred CccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003363 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (826)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lv 314 (826)
....|+++|.+ ++.+.+........+..+++.|||+ |+
T Consensus 123 ------------------------------------~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-----l~ 160 (300)
T 2qc5_A 123 ------------------------------------NGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-----LW 160 (300)
T ss_dssp ------------------------------------TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-----EE
T ss_pred ------------------------------------CCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-----EE
Confidence 12568888887 6665442111223566788899887 66
Q ss_pred EEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceec--CCCCccccCceecCCCCEEEEEecc
Q 003363 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL--TESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L--t~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
+... ....|+++|. . ++...+ ...........+++||+ |++....
T Consensus 161 v~~~--------------~~~~i~~~~~-----------------~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~ 207 (300)
T 2qc5_A 161 FTEN--------------QNNSIGRITN-----------------T-GKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIM 207 (300)
T ss_dssp EEET--------------TTTEEEEECT-----------------T-CCEEEEECSSTTCCEEEEEECTTSS-EEEEETT
T ss_pred EEec--------------CCCeEEEECC-----------------C-CcEEEeeCCCCCCCcceEEECCCCC-EEEEccC
Confidence 5541 1236888875 2 222222 12223455677889986 4433322
Q ss_pred CCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003363 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (826)
...|+++|. ++...... .+.. + ..+..+.++++|+ |+++. .+...|++
T Consensus 208 ----------~~~i~~~~~-~g~~~~~~-----------~~~~--~-----~~~~~i~~d~~g~-l~v~~--~~~~~i~~ 255 (300)
T 2qc5_A 208 ----------GNKIGRITT-TGEISEYD-----------IPTP--N-----ARPHAITAGKNSE-IWFTE--WGANQIGR 255 (300)
T ss_dssp ----------TTEEEEECT-TCCEEEEE-----------CSST--T-----CCEEEEEECSTTC-EEEEE--TTTTEEEE
T ss_pred ----------CCEEEEEcC-CCcEEEEE-----------CCCC--C-----CCceEEEECCCCC-EEEec--cCCCeEEE
Confidence 246888986 32221110 0000 0 0123566788987 66654 23456888
Q ss_pred EECCCCcEEEecCC--CCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEe
Q 003363 473 VNVSSGELLRITPA--ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 519 (826)
Q Consensus 473 vdl~tg~~~~lt~~--~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~ 519 (826)
+|. +++...+... ........++++|+ +++.. . . .|+.++
T Consensus 256 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~-~--~--~i~~~~ 297 (300)
T 2qc5_A 256 ITN-DNTIQEYQLQTENAEPHGITFGKDGS-VWFAL-K--C--KIGKLN 297 (300)
T ss_dssp ECT-TSCEEEEECCSTTCCCCCEEECTTSC-EEEEC-S--S--EEEEEE
T ss_pred ECC-CCcEEEEECCccCCccceeEeCCCCC-EEEEc-c--C--ceEEeC
Confidence 888 5676655332 12223334555654 44332 2 1 566555
|
| >4az3_A Lysosomal protective protein 32 kDa chain; hydrolase, drug discovery, carboxypeptidase, cardiovascular; HET: NAG S35; 2.04A {Homo sapiens} PDB: 4az0_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0093 Score=60.60 Aligned_cols=129 Identities=21% Similarity=0.267 Sum_probs=79.2
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCC---------------------cEEEEECCC
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG---------------------YSLLIVNYR 630 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G---------------------~~Vl~~d~r 630 (826)
.+..+..|++...+ .....|+||++-|||+.... ...|.+.| ..++-+|.+
T Consensus 32 ~~~~lFywf~es~~--~p~~~Pl~lWlnGGPGcSS~------~g~~~E~GP~~~~~~~~~l~~N~~sW~~~an~lfiD~P 103 (300)
T 4az3_A 32 GSKHLHYWFVESQK--DPENSPVVLWLNGGPGCSSL------DGLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESP 103 (300)
T ss_dssp TTEEEEEEEECCSS--CTTTSCEEEEECCTTTBCTH------HHHHHTTSSEEECTTSSCEEECTTCGGGSSEEEEECCS
T ss_pred CCCeEEEEEEEcCC--CCCCCCEEEEECCCCcHHHH------HHHHhcCCCceecCCCccccccCccHHhhhcchhhcCC
Confidence 35678888886543 34568999999999987431 12222222 467778866
Q ss_pred CCCCCchhhhhcCCCCCCcchHHHHHHHHH-HHHHcCCCCCCcEEEEEecchHHHHHHHHHh---CC-CceeEEEecCCc
Q 003363 631 GSLGFGEEALQSLPGKVGSQDVNDVLTAID-HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ---AP-DKFVAAAARNPL 705 (826)
Q Consensus 631 G~~g~G~~~~~~~~~~~~~~~~~D~~~~i~-~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~---~p-~~~~a~v~~~p~ 705 (826)
-..||........ .........|+..+++ |+...+.....++.|.|.|+||..+-.+|.. .+ -.++++++.+|+
T Consensus 104 vGtGfSy~~~~~~-~~~~~~~a~d~~~fl~~f~~~fp~~~~~~~yi~GESY~G~yvP~~a~~i~~~~~inLkG~~iGNg~ 182 (300)
T 4az3_A 104 AGVGFSYSDDKFY-ATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGL 182 (300)
T ss_dssp TTSTTCEETTCCC-CCBHHHHHHHHHHHHHHHHHHCGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEESCC
T ss_pred CcccccccCCCcc-cccchhhHHHHHHHHHHHHHhChhhcCCceEEEecCCceeeHHHHHHHHHhCCCcccccceecCCc
Confidence 4455543321110 0111112455555554 3333444556789999999999998777653 22 258999999999
Q ss_pred cchh
Q 003363 706 CNLA 709 (826)
Q Consensus 706 ~~~~ 709 (826)
++..
T Consensus 183 ~d~~ 186 (300)
T 4az3_A 183 SSYE 186 (300)
T ss_dssp SBHH
T ss_pred cCHH
Confidence 8764
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.25 Score=50.85 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=23.7
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEec
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHV 196 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~ 196 (826)
.....+++|||+ |+ +.+......+++.+. .+++...+...
T Consensus 73 ~p~gia~~~dG~-l~-vad~~~~~~~v~~~d~~~g~~~~~~~~ 113 (306)
T 2p4o_A 73 KVSGLAFTSNGD-LV-ATGWNADSIPVVSLVKSDGTVETLLTL 113 (306)
T ss_dssp EEEEEEECTTSC-EE-EEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred CceeEEEcCCCc-EE-EEeccCCcceEEEEcCCCCeEEEEEeC
Confidence 456788999998 43 433221233577766 56666655544
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.017 Score=63.07 Aligned_cols=159 Identities=15% Similarity=0.264 Sum_probs=92.7
Q ss_pred cccEEEEeCC-CCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSP-SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
.....++++| ++..|+++... ..+..+. .++....+....... .+++|++||++|+.......
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~----~~I~~id~~~~~v~~~~~~~~~P----------~~ia~d~~G~~lyvad~~~~- 201 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQ----HPTRLIDFEKEYVSTVYSGLSKV----------RTICWTHEADSMIITNDQNN- 201 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBT----EEEEEEETTTTEEEEEECCCSCE----------EEEEECTTSSEEEEEECCSC-
T ss_pred CCCCEEEECCCCCCeEEEEeCC----CcEEEEECCCCEEEEEecCCCCc----------ceEEEeCCCCEEEEEeCCCC-
Confidence 3567889999 56666555432 4566777 344444444322222 58999999997665432110
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCce--EeccCCCCCCccceEEEeeCCCCC
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNEGL 309 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~--~~l~~~~~~~~~~~~~wSPDg~~~ 309 (826)
.....+++++.+++-. +.+ ........++++|++..
T Consensus 202 --------------------------------------~~~~~v~~~~~~g~~~~~~~l---~~~~~p~giavdp~~g~- 239 (430)
T 3tc9_A 202 --------------------------------------NDRPNNYILTRESGFKVITEL---TKGQNCNGAETHPINGE- 239 (430)
T ss_dssp --------------------------------------TTSEEEEEEEGGGTSCSEEEE---EECSSCCCEEECTTTCC-
T ss_pred --------------------------------------cccceEEEEeCCCceeeeeee---ccCCCceEEEEeCCCCE-
Confidence 0123466666544322 222 11224567889996665
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCC--CCccccCceecCCCCEEE
Q 003363 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE--SISSAFFPRFSPDGKFLV 387 (826)
Q Consensus 310 ~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~--~~~~~~~p~~SpDG~~l~ 387 (826)
|+++.+ ....|++++. +++....+.. ........+|+|||++|+
T Consensus 240 ---lyv~d~--------------~~~~V~~~~~-----------------~~~~~~~~~~~~~~~~P~gia~~pdG~~ly 285 (430)
T 3tc9_A 240 ---LYFNSW--------------NAGQVFRYDF-----------------TTQETTPLFTIQDSGWEFHIQFHPSGNYAY 285 (430)
T ss_dssp ---EEEEET--------------TTTEEEEEET-----------------TTTEEEEEEECSSSSCCEEEEECTTSSEEE
T ss_pred ---EEEEEC--------------CCCEEEEEEC-----------------CCCcEEEEEEcCCCCcceeEEEcCCCCEEE
Confidence 877652 2237999997 5554423321 122355689999999887
Q ss_pred EEeccCCCCCCCCcccceEEEEeCCC
Q 003363 388 FLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 388 f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
+.... ...|++++.+.
T Consensus 286 v~d~~----------~~~I~~~~~d~ 301 (430)
T 3tc9_A 286 IVVVN----------QHYILRSDYDW 301 (430)
T ss_dssp EEETT----------TTEEEEEEEET
T ss_pred EEECC----------CCEEEEEeCCc
Confidence 66543 25788887664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 826 | ||||
| d1xfda2 | 258 | c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-li | 1e-20 | |
| d1vlqa_ | 322 | c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Therm | 4e-18 | |
| d2bgra2 | 258 | c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26 | 8e-16 | |
| d1l7aa_ | 318 | c.69.1.25 (A:) Cephalosporin C deacetylase {Bacill | 4e-15 | |
| d1qfma2 | 280 | c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-term | 1e-13 | |
| d2hu7a2 | 260 | c.69.1.33 (A:322-581) Acylamino-acid-releasing enz | 2e-12 | |
| d2gzsa1 | 265 | c.69.1.38 (A:41-305) Enterobactin and salmochelin | 2e-12 | |
| d2d81a1 | 318 | c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymer | 2e-12 | |
| d1ufoa_ | 238 | c.69.1.27 (A:) Hypothetical protein TT1662 {Thermu | 6e-11 | |
| d1thta_ | 302 | c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase | 8e-11 | |
| d1lnsa3 | 405 | c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopep | 1e-10 | |
| d1jjia_ | 311 | c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeogl | 3e-10 | |
| d1sfra_ | 288 | c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculo | 5e-10 | |
| d1lzla_ | 317 | c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [Ta | 3e-08 | |
| d1vkha_ | 263 | c.69.1.32 (A:) Putative serine hydrolase Ydr428c { | 9e-08 | |
| d1qlwa_ | 318 | c.69.1.15 (A:) A novel bacterial esterase {Alcalig | 2e-07 | |
| d3c8da2 | 246 | c.69.1.2 (A:151-396) Enterochelin esterase, cataly | 3e-07 | |
| d2b9va2 | 385 | c.69.1.21 (A:50-434) Alpha-amino acid ester hydrol | 2e-06 | |
| d1jkma_ | 358 | c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, | 2e-06 | |
| d1mpxa2 | 381 | c.69.1.21 (A:24-404) Alpha-amino acid ester hydrol | 6e-06 | |
| d1u4na_ | 308 | c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus a | 1e-05 | |
| d1r88a_ | 267 | c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tu | 3e-05 | |
| d1tqha_ | 242 | c.69.1.29 (A:) Carboxylesterase Est {Bacillus stea | 4e-05 | |
| d1tcaa_ | 317 | c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Cand | 4e-05 | |
| d1dqza_ | 280 | c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculo | 7e-05 | |
| d1wb4a1 | 273 | c.69.1.2 (A:803-1075) Feruloyl esterase domain of | 9e-05 | |
| d2h1ia1 | 202 | c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cer | 3e-04 | |
| d3b5ea1 | 209 | c.69.1.14 (A:7-215) Uncharacterized protein Mll837 | 3e-04 | |
| d2r8ba1 | 203 | c.69.1.14 (A:44-246) Uncharacterized protein Atu24 | 4e-04 | |
| d1jfra_ | 260 | c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [Ta | 6e-04 |
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.2 bits (222), Expect = 1e-20
Identities = 32/237 (13%), Positives = 82/237 (34%), Gaps = 14/237 (5%)
Query: 593 PLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649
PL++V+ G P S S++ S +SS G ++ + RGS G + L + ++G
Sbjct: 32 PLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGL 91
Query: 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709
+ D + A+ ++ + ++V V G +GG+L+T+++ + +
Sbjct: 92 LEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPI 151
Query: 710 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 769
++ + ++ + +
Sbjct: 152 TDFKLYASAFSERYLGLHGLDNRAYEMTKVAHRVSALEEQQFLIIHPT-----------A 200
Query: 770 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826
D ++ + + L + ++P++ H + +I +F + +
Sbjct: 201 DEKIHFQHTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQHLYRSIINFFVECFR 257
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Score = 84.0 bits (206), Expect = 4e-18
Identities = 34/253 (13%), Positives = 69/253 (27%), Gaps = 36/253 (14%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYR---------------------G 631
P +V G + F S+GY +++ R
Sbjct: 83 PCVVQYIGYNGG---RGFPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQ 139
Query: 632 SLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 691
GF + + D + A++ + ++ + GGS GG + +
Sbjct: 140 YPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSAL 199
Query: 692 APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP 751
+ LC+ V D + + ++ +D +
Sbjct: 200 SKKAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVN--- 256
Query: 752 ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 811
++ K P +F +G D P S ++ ++P + H
Sbjct: 257 --FAARAKIPALFSVGLMDNICPPSTVFAAYNYY---AGPKEIRIYPYNNHEGGGSFQAV 311
Query: 812 ESFLNIGLWFKKY 824
E + KK
Sbjct: 312 EQV----KFLKKL 320
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 76.0 bits (185), Expect = 8e-16
Identities = 38/234 (16%), Positives = 89/234 (38%), Gaps = 16/234 (6%)
Query: 593 PLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649
PL++ ++ GP S + + S+ + + RGS G++ + ++ ++G+
Sbjct: 33 PLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGT 92
Query: 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709
+V D + A MG + ++ + G S+GG++T+ ++G F A P+
Sbjct: 93 FEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWE 152
Query: 710 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 769
+ +S + + + + G
Sbjct: 153 YYDSVYTERYMGLPTPEDNLDH-------------YRNSTVMSRAENFKQVEYLLIHGTA 199
Query: 770 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823
D V Q ++AL + GV+ + + + ++ HGI + + ++ + K+
Sbjct: 200 DDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ 253
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Score = 75.2 bits (183), Expect = 4e-15
Identities = 43/248 (17%), Positives = 80/248 (32%), Gaps = 27/248 (10%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG---- 648
P IV HG S + + GY+ + RG + ++ +G
Sbjct: 83 PAIVKYHGYNASYD--GEIHEMVNWALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTK 140
Query: 649 ----------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 698
D + A++ + + +++ V GGS GG LT + A
Sbjct: 141 GILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAA 200
Query: 699 AAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV 758
A L N + + + S+ + TE +++ L+ F ++ +V
Sbjct: 201 VADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFD---IMNLADRV 257
Query: 759 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIG 818
K P + +G D P S L + ++ V+ H
Sbjct: 258 KVPVLMSIGLIDKVTPPSTVFAAYNHL---ETKKELKVYRYFGHEYIPAFQT-----EKL 309
Query: 819 LWFKKYCK 826
+FK+ K
Sbjct: 310 AFFKQILK 317
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 70.2 bits (170), Expect = 1e-13
Identities = 33/242 (13%), Positives = 57/242 (23%), Gaps = 11/242 (4%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
P + +GG + +YS S +L V G E Q+
Sbjct: 37 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNC 96
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
D + K + G G L L
Sbjct: 97 FDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKF 156
Query: 713 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 772
I + S K F H+ + L D R
Sbjct: 157 HKYTIGHAWTTDYGCSDSKQHFEWLIKYSP---LHNVKLPEADDIQYPSMLLLTADHDDR 213
Query: 773 VPVSNGLQYARALREKGVETK-------VIVFPNDVHGIERPQSD-FESFLNIGLWFKKY 824
V + L++ L+ ++ + V HG +P + E ++ + +
Sbjct: 214 VVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARC 273
Query: 825 CK 826
Sbjct: 274 LN 275
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Score = 66.1 bits (159), Expect = 2e-12
Identities = 50/234 (21%), Positives = 92/234 (39%), Gaps = 14/234 (5%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
P +V++HGGP + S+ A L++ G+ +++ NYRGS G+GEE + G ++
Sbjct: 40 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 99
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
DV A + GLA+ + + P F A A + + M
Sbjct: 100 EDVSAAARWARESGLASELYIMGYSYGGYMT--LCALTMKPGLFKAGVAGASVVDWEEMY 157
Query: 713 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 772
+D ++E ++ S+SPI+H+ ++K P + D R
Sbjct: 158 ELSDAAFRNFIEQLTGGSRE------------IMRSRSPINHVDRIKEPLALIHPQNDSR 205
Query: 773 VPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826
P+ L+ L +G + + P+ H I + + L + +
Sbjct: 206 TPLKPLLRLMGELLARGKTFEAHIIPDAGHAINTMEDAVKILLPAVFFLATQRE 259
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Score = 66.2 bits (160), Expect = 2e-12
Identities = 26/231 (11%), Positives = 50/231 (21%), Gaps = 46/231 (19%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
P++ +L G L ++ V Y+ +L F +
Sbjct: 44 PILYMLDGNAVMDRLDDELLKQ-LSEKTPPVIVAVGYQTNLPFDLNSRAYDYTPAAESRK 102
Query: 653 ND--------------------VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA 692
D V + + + G S+GG +
Sbjct: 103 TDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLSS 162
Query: 693 PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPI 752
+ + +P + + ++
Sbjct: 163 SYFR-SYYSASPSLGRGYDALLSRVTAVEPLQ------------------------FCTK 197
Query: 753 SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803
+ T +S L++KGV FPN HG
Sbjct: 198 HLAIMEGSATQGDNRETHAVGVLSKIHTTLTILKDKGVNAVFWDFPNLGHG 248
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Score = 66.6 bits (162), Expect = 2e-12
Identities = 20/150 (13%), Positives = 36/150 (24%), Gaps = 15/150 (10%)
Query: 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE--S 725
NP+ V+V G + GG++ L D F P C
Sbjct: 8 VNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAG-----------GPYDCARNQYY 56
Query: 726 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARAL 785
+ + ++ + S + + G+ D V + Q L
Sbjct: 57 TSCMYNGYPSITTPTANMKSWSGNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQL 116
Query: 786 REK--GVETKVIVFPNDVHGIERPQSDFES 813
+ VH +
Sbjct: 117 GNFDNSANVSYVTTTGAVHTFPTDFNGAGD 146
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Score = 61.3 bits (147), Expect = 6e-11
Identities = 33/238 (13%), Positives = 62/238 (26%), Gaps = 34/238 (14%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
L++ LHG S L + G+ LL + S + +
Sbjct: 25 ALLLALHGLQGS--KEHILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVY 82
Query: 653 NDVLT----AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708
L A + + + GGS G F+ L+ + A +
Sbjct: 83 RVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPM 142
Query: 709 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 768
L G + + + P + L G+
Sbjct: 143 KLPQGQVVEDPGVL---------------------ALYQAPPATRGEAYGGVPLLHLHGS 181
Query: 769 QDLRVPVSNGLQYARALREKGVETKV--IVFPNDVHGIERPQSDFESFLNIGLWFKKY 824
+D VP++ + ALR E ++ V H + + + +
Sbjct: 182 RDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGHTLTP-----LMARVGLAFLEHW 234
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Score = 61.9 bits (149), Expect = 8e-11
Identities = 24/233 (10%), Positives = 60/233 (25%), Gaps = 22/233 (9%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
I++ G + ++ +LS+ G+ + + +G ++ G +
Sbjct: 33 NTILIASGFARR--MDHFAGLAEYLSTNGFHVFRYDSLHHVGLSSGSIDEFTMTTGKNSL 90
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA---------RN 703
V + + ++ S + +I F+ A
Sbjct: 91 CTVYHWLQTK------GTQNIGLIAASLSARVAYEVISDLELSFLITAVGVVNLRDTLEK 144
Query: 704 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTI 763
L L + ++P+ E + + + S + ++ P I
Sbjct: 145 ALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHH---WDTLDSTLDKVANTSVPLI 201
Query: 764 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLN 816
D V + + K+ H + +F
Sbjct: 202 AFTANNDDWVKQEEVYDMLAHI--RTGHCKLYSLLGSSHDLGENLVVLRNFYQ 252
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Score = 61.9 bits (149), Expect = 1e-10
Identities = 33/277 (11%), Positives = 71/277 (25%), Gaps = 50/277 (18%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
+ ++ P+ + + + G++ + V G+ Q +
Sbjct: 108 KELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGF-----QTSGDYQQI 162
Query: 653 NDVLTAIDHVIDMGLANPS--------------KVTVVGGSHGGFLTTHLIGQAPDKFVA 698
+ ID + A S KV + G S+ G + +
Sbjct: 163 YSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLEL 222
Query: 699 AAARNPLCNLALMV---GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR---------- 745
A + + G P E +++ + D +
Sbjct: 223 ILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLA 282
Query: 746 ----------------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG 789
+H ++ + + KVK + + G QD V + +AL +G
Sbjct: 283 EMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALP-EG 341
Query: 790 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826
+ H + I +F
Sbjct: 342 HAKHAFLHRGA-HIYMNSWQSIDFSETINAYFVAKLL 377
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 60.1 bits (144), Expect = 3e-10
Identities = 40/217 (18%), Positives = 69/217 (31%), Gaps = 16/217 (7%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650
P++V HGG + +L + +++ V+YR + P V
Sbjct: 80 PVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEH------KFPAAV--Y 131
Query: 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710
D D + + +PSK+ V G S GG L + A D L +
Sbjct: 132 DCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVV 191
Query: 711 MVGTTDIPDWCYVESYGSKGKDSFTES----PSVEDLTRFHSKSPISHISKVKTPTIFLL 766
+ E + + S E+ S I + P + +
Sbjct: 192 NFVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADLENLPPALIIT 251
Query: 767 GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803
D G + + LR GVE ++ + +HG
Sbjct: 252 AEYD--PLRDEGEVFGQMLRRAGVEASIVRYRGVLHG 286
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 58.8 bits (141), Expect = 5e-10
Identities = 33/228 (14%), Positives = 58/228 (25%), Gaps = 22/228 (9%)
Query: 593 PLIVVLHGGPHSVSLSSYSKS---LAFLSSVGYSLLIVNYRGSLGFG---EEALQSLPGK 646
P + +L G S + + + G S+++ S + + A +
Sbjct: 35 PALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYSDWYQPACGKAGCQ 94
Query: 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706
+ + P+ VVG S L P +FV A A + L
Sbjct: 95 TYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLL 154
Query: 707 NLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLL 766
+ + +G T + G R + + T
Sbjct: 155 DPSQAMGPTL--IGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNVGKLIANNTRVWVYC 212
Query: 767 GAQDLRVPVSNGL--------------QYARALREKGVETKVIVFPND 800
G N L ++ A G V FP+
Sbjct: 213 GNGKPSDLGGNNLPAKFLEGFVRTSNIKFQDAYNAGGGHNGVFDFPDS 260
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Score = 53.7 bits (127), Expect = 3e-08
Identities = 34/144 (23%), Positives = 49/144 (34%), Gaps = 9/144 (6%)
Query: 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT--------DIPD 719
+PS++ V G S GG L + +A D+ V A L L D P
Sbjct: 148 IDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPELDDRLETVSMTNFVDTPL 207
Query: 720 WCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGL 779
W + S ED +P P +L +L G+
Sbjct: 208 WHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRATDLTGLPPTYLSTM-ELDPLRDEGI 266
Query: 780 QYARALREKGVETKVIVFPNDVHG 803
+YA L + GV ++ FP HG
Sbjct: 267 EYALRLLQAGVSVELHSFPGTFHG 290
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.8 bits (122), Expect = 9e-08
Identities = 21/229 (9%), Positives = 57/229 (24%), Gaps = 30/229 (13%)
Query: 592 DPLIVVLHGG------PHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLP 644
++ +HGG + + ++ + + Y + P
Sbjct: 31 REAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEY-----------RLSP 79
Query: 645 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 704
+++ D ++ I ++ + + +VG S G ++ D +
Sbjct: 80 EITNPRNLYDAVSNITRLVKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQL 137
Query: 705 LCNLALMVGTTDIPDWC----------YVESYGSKGKDSFTESPSVEDLTRFHSKSPISH 754
L + Y E E+
Sbjct: 138 QMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTRLAFPDGIQMYEEEPSRVMPYVKKA 197
Query: 755 ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803
+S+ + D + + L++ + K+ + +H
Sbjct: 198 LSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHN 246
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Score = 51.8 bits (122), Expect = 2e-07
Identities = 27/235 (11%), Positives = 55/235 (23%), Gaps = 25/235 (10%)
Query: 593 PLIVVLHGGPHSVS-----LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647
I ++HG + + GYS +++ G + K+
Sbjct: 59 YPITLIHGCCLTGMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVKL 118
Query: 648 GSQDVNDVLTAIDH-----VIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR 702
G + L + + P + + Q +
Sbjct: 119 G-KAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMP 177
Query: 703 NPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR-------FHSKSPISHI 755
P +A + D + S+ G F + P
Sbjct: 178 TPNPTVANLSKLAIKLDGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGECPKPEDVK 237
Query: 756 SKVKTPTIFLLGAQDLRVPVSNGL-----QYARALREKGVETKVIVFPNDVHGIE 805
P + + G P + AL G + +++ P G+
Sbjct: 238 PLTSIPVLVVFGDHIEEFPRWAPRLKACHAFIDALNAAGGKGQLMSLPA--LGVH 290
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Score = 50.3 bits (119), Expect = 3e-07
Identities = 27/207 (13%), Positives = 47/207 (22%), Gaps = 30/207 (14%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD- 651
PL V+L G + S+ L L+ V LP
Sbjct: 45 PLAVLLDGEFWAQSMPV-WPVLTSLTHRQQLPPAVYVLIDAIDTTHRAHELPCNADFWLA 103
Query: 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711
V L + VI + V G S GG + P++F +++
Sbjct: 104 VQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHR 163
Query: 712 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 771
G + + +S + G ++
Sbjct: 164 GGQQEGVLLEKL---------------------------KAGEVSAEGLRIVLEAGIREP 196
Query: 772 RVPVSNGLQYARALREKGVETKVIVFP 798
+ +N L
Sbjct: 197 MIMRAN-QALYAQLHPIKESIFWRQVD 222
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} Length = 385 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Score = 48.6 bits (114), Expect = 2e-06
Identities = 15/140 (10%), Positives = 36/140 (25%), Gaps = 11/140 (7%)
Query: 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSL 633
+ + + + + GY + + RG
Sbjct: 52 RNAPILLTRTPYNAKGR------ANRVPNALTMREVLPQGDDVFVEGGYIRVFQDIRGKY 105
Query: 634 GFGEE-----ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHL 688
G + + + D +D ++ + +V + G S+ GF
Sbjct: 106 GSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMA 165
Query: 689 IGQAPDKFVAAAARNPLCNL 708
+ AA +P+ +
Sbjct: 166 LLDPHPALKVAAPESPMVDG 185
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} Length = 358 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Score = 48.3 bits (113), Expect = 2e-06
Identities = 21/142 (14%), Positives = 36/142 (25%), Gaps = 17/142 (11%)
Query: 677 GGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTE 736
G S GG L A + A ++ + G + S ++
Sbjct: 188 GESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISGGYAWDHERRLTELPSLVENDGYF 247
Query: 737 SPSV---------------EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQY 781
+ + + P + + D G+ +
Sbjct: 248 IENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNELD--PLRDEGIAF 305
Query: 782 ARALREKGVETKVIVFPNDVHG 803
AR L GV+ V VHG
Sbjct: 306 ARRLARAGVDVAARVNIGLVHG 327
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Score = 47.1 bits (110), Expect = 6e-06
Identities = 22/130 (16%), Positives = 40/130 (30%), Gaps = 14/130 (10%)
Query: 593 PLIVVLH----GGPHSVSLSSYSKSL-----AFLSSVGYSLLIVNYRGSLGFGEE----- 638
P+++ G S + K L GY + + RG G +
Sbjct: 51 PIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDVRGKYGSEGDYVMTR 110
Query: 639 ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 698
L+ D ID ++ + KV ++G S+ GF +
Sbjct: 111 PLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKV 170
Query: 699 AAARNPLCNL 708
A +P+ +
Sbjct: 171 AVPESPMIDG 180
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Score = 45.7 bits (106), Expect = 1e-05
Identities = 35/186 (18%), Positives = 60/186 (32%), Gaps = 14/186 (7%)
Query: 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709
+D D L I +P+++ V G S GG L A ++ A A L +
Sbjct: 124 EDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPS 183
Query: 710 LMVGTTDIPDWCYVESYGSKGKDSFTES------PSVEDLTRFHSKSPISHISKVKTPTI 763
P + G + S+E+LT + P
Sbjct: 184 TGYDPAHPPASIEENAEGYLLTGGMSLWFLDQYLNSLEELTHPWFSPVLYPDLSGLPPAY 243
Query: 764 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER-----PQSDFESFLNIG 818
D G YA AL + GV+ ++ F + +HG + P + ++ + I
Sbjct: 244 IATAQYD--PLRDVGKLYAEALNKAGVKVEIENFEDLIHGFAQFYSLSPGAT-KALVRIA 300
Query: 819 LWFKKY 824
+
Sbjct: 301 EKLRDA 306
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 44.5 bits (104), Expect = 3e-05
Identities = 27/223 (12%), Positives = 60/223 (26%), Gaps = 20/223 (8%)
Query: 592 DPLIVVLHG---GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648
+ +L GP + + ++ L+ G S++ G+ Q +
Sbjct: 27 PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPA-GGAYSMYTNWEQDGSKQWD 85
Query: 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708
+ ++ D + P VG + GG+ L PD+F A + +
Sbjct: 86 TFLSAEL---PDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYP 142
Query: 709 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 768
+ ++ +G + +P + S +++ T
Sbjct: 143 SNTTTNG--AIAAGMQQFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRVWVWSPT 200
Query: 769 QDLRVPVSNGL-----------QYARALREKGVETKVIVFPND 800
+ + + R G FP
Sbjct: 201 NPGASDPAAMIGQAAEAMGNSRMFYNQYRSVGGHNGHFDFPAS 243
|
| >d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/lipase domain: Carboxylesterase Est species: Bacillus stearothermophilus [TaxId: 1422]
Score = 43.7 bits (101), Expect = 4e-05
Identities = 28/221 (12%), Positives = 59/221 (26%), Gaps = 19/221 (8%)
Query: 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
+ +++LHG + + FL S GY+ Y+G EE V +
Sbjct: 11 ERAVLLLHGFTGN--SADVRMLGRFLESKGYTCHAPIYKGHGVPPEE-------LVHTGP 61
Query: 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK--------FVAAAARN 703
+ ++ + K+ V G S GG + L P + +
Sbjct: 62 DDWWQDVMNGYEFLKNKGYEKIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMYIKSEET 121
Query: 704 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTI 763
+ + E + + + H+ + PT
Sbjct: 122 MYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTLKALQELIADVRDHLDLIYAPTF 181
Query: 764 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
+ D + + + + + + H I
Sbjct: 182 VVQARHDEMINPDSANIIYNEIESPVKQ--IKWYEQSGHVI 220
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Score = 43.9 bits (103), Expect = 4e-05
Identities = 27/203 (13%), Positives = 54/203 (26%), Gaps = 34/203 (16%)
Query: 595 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 654
I+++ G + S S + + +GY+ ++ + +
Sbjct: 34 ILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWISPPPF-MLND----------TQVNTEY 82
Query: 655 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD------KFVAAAARNPLCNL 708
++ AI + N K+ V+ S GG + + P + +A A
Sbjct: 83 MVNAITALYAGSGNN--KLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDY----- 135
Query: 709 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 768
GT + T S L + V T ++ A
Sbjct: 136 ---KGTVLAGPLDALAVSAPSVWQQTTGSALTTALRNAGGLTQ-----IVPTTNLY--SA 185
Query: 769 QDLRVPVSNGLQYARALREKGVE 791
D V + +
Sbjct: 186 TDEIVQPQVSNSPLDSSYLFNGK 208
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 43.4 bits (101), Expect = 7e-05
Identities = 28/229 (12%), Positives = 55/229 (24%), Gaps = 22/229 (9%)
Query: 592 DPLIVVLHGGPHSVSLSSYSKS---LAFLSSVGYSLLIVNYRGSLGFG---EEALQSLPG 645
+ +L G + + + G S+++ S + + + +
Sbjct: 29 PHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYTDWYQPSQSNGQN 88
Query: 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705
+ + +P+ VG S G L P +F AA+ +
Sbjct: 89 YTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGF 148
Query: 706 CNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFL 765
N + T + G +S S R I + T
Sbjct: 149 LNPSESWWPT--LIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVY 206
Query: 766 LGAQDLRVPVSNGL--------------QYARALREKGVETKVIVFPND 800
G + + + G V FP +
Sbjct: 207 CGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTYAADGGRNGVFNFPPN 255
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Score = 42.9 bits (99), Expect = 9e-05
Identities = 20/220 (9%), Positives = 48/220 (21%), Gaps = 29/220 (13%)
Query: 593 PLIVVLHGGPHSVS---------LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 643
+ ++HGG + + + ++ ++ + G + Q
Sbjct: 56 NIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNGGNCTAQNFYQEF 115
Query: 644 PGKVGS-QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR 702
V + A A+ G + GG T +++ D
Sbjct: 116 RQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPL 175
Query: 703 NPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPT 762
+ G + + ++ SK + +
Sbjct: 176 SG----DYWYGNSPQDKANSIAEAINRSGL---------------SKREYFVFAATGSED 216
Query: 763 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH 802
I + + +V P H
Sbjct: 217 IAYANMNPQIEAMKALPHFDYTSDFSKGNFYFLVAPGATH 256
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Score = 40.9 bits (94), Expect = 3e-04
Identities = 25/233 (10%), Positives = 60/233 (25%), Gaps = 49/233 (21%)
Query: 593 PLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ- 650
P++++LHG G + + L ++ + +SV V G F + + +
Sbjct: 15 PVLLLLHGTGGNELDLLPLAEIVDSEASVLSVRGNVLENGMPRFFRRLAEGIFDEEDLIF 74
Query: 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710
++ +D + + + +G S+G + L+ + A +P+
Sbjct: 75 RTKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRG 134
Query: 711 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQD 770
M ++ + D
Sbjct: 135 MQLANLAGKSVFIAAG-----------------------------------------TND 153
Query: 771 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823
+ + L + H + + E W+ K
Sbjct: 154 PICSSAESEELKVLLENANANVTMHWENRG-HQL--TMGEVEKAKE---WYDK 200
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Score = 40.8 bits (94), Expect = 3e-04
Identities = 33/226 (14%), Positives = 58/226 (25%), Gaps = 46/226 (20%)
Query: 593 PLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNY-RGSLGFGEEALQSLPGKVGSQ 650
+ +LHG G +L ++ +A +++ + + G F K
Sbjct: 24 ECLFLLHGSGVDETTLVPLARRIAPTATLVAARGRIPQEDGFRWFERIDPTRFEQKSILA 83
Query: 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710
+ + N T +G S+G L + L+ P AA P+ L
Sbjct: 84 ETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLDH 143
Query: 711 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQD 770
+ T + + GA D
Sbjct: 144 VPATDLAGIRTLI-----------------------------------------IAGAAD 162
Query: 771 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ-SDFESFL 815
L G E + P+ H I P + +L
Sbjct: 163 ETYG-PFVPALVTLLSRHGAEVDARIIPSG-HDIGDPDAAIVRQWL 206
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} Length = 203 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 40.1 bits (92), Expect = 4e-04
Identities = 33/235 (14%), Positives = 64/235 (27%), Gaps = 53/235 (22%)
Query: 593 PLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
PL V+LHG G + L +++ L V G ++ G D
Sbjct: 18 PLFVLLHGTGGDENQFFDFGARLLPQATI---LSPVGDVSEHGAARFFRRTGEGVYDMVD 74
Query: 652 VNDVLTAIDHVIDMGLA--NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709
+ + I V +G S+G + +++ + P+ F AA +PL
Sbjct: 75 LERATGKMADFIKANREHYQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFE 134
Query: 710 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 769
+ + + +
Sbjct: 135 PKISPAKPTRRVLITAG-----------------------------------------ER 153
Query: 770 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824
D PV +L+ +G + + P H I + ++ + Y
Sbjct: 154 DPICPVQLTKALEESLKAQGGTVETVWHPGG-HEI--RSGEIDAVRG---FLAAY 202
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Score = 40.0 bits (92), Expect = 6e-04
Identities = 26/237 (10%), Positives = 64/237 (27%), Gaps = 66/237 (27%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
+V+ G S S + L+S G+ + ++ +L +
Sbjct: 53 GAVVISPGFTAYQS--SIAWLGPRLASQGFVVFTIDTNTTLDQPD------------SRG 98
Query: 653 NDVLTAIDHVIDM----GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708
+L+A+D++ + +++ V+G S GG
Sbjct: 99 RQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGG------------------------GG 134
Query: 709 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 768
+L + + + +++TPT+ +
Sbjct: 135 SLEAAKSRTSLKAAI---------------------PLTGWNTDKTWPELRTPTLVVGAD 173
Query: 769 QDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL-WFKKY 824
D PV+ + ++ + H + + W K++
Sbjct: 174 GDTVAPVATHSKPFYESLPGSLDKAYLELRGASHFTPNTSD--TTIAKYSISWLKRF 228
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 826 | |||
| d2hu7a2 | 260 | Acylamino-acid-releasing enzyme, C-terminal donain | 100.0 | |
| d1xfda2 | 258 | Dipeptidyl aminopeptidase-like protein 6, DPP6, C- | 99.97 | |
| d2bgra2 | 258 | Dipeptidyl peptidase IV/CD26, C-terminal domain {P | 99.97 | |
| d1qfma2 | 280 | Prolyl oligopeptidase, C-terminal domain {Pig (Sus | 99.93 | |
| d1l7aa_ | 318 | Cephalosporin C deacetylase {Bacillus subtilis [Ta | 99.92 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.91 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.91 | |
| d1vlqa_ | 322 | Acetyl xylan esterase TM0077 {Thermotoga maritima | 99.9 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 99.9 | |
| d1jfra_ | 260 | Lipase {Streptomyces exfoliatus [TaxId: 1905]} | 99.87 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.86 | |
| d2fuka1 | 218 | XC6422 protein {Xanthomonas campestris [TaxId: 339 | 99.85 | |
| d1thta_ | 302 | Myristoyl-ACP-specific thioesterase {Vibrio harvey | 99.84 | |
| d1lzla_ | 317 | Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | 99.83 | |
| d1ufoa_ | 238 | Hypothetical protein TT1662 {Thermus thermophilus | 99.83 | |
| d1dina_ | 233 | Dienelactone hydrolase {Pseudomonas sp., B13 [TaxI | 99.82 | |
| d2pbla1 | 261 | Uncharacterized protein TM1040_2492 {Silicibacter | 99.81 | |
| d2h1ia1 | 202 | Carboxylesterase {Bacillus cereus [TaxId: 1396]} | 99.81 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 99.8 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 99.8 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.8 | |
| d1u4na_ | 308 | Carboxylesterase {Alicyclobacillus acidocaldarius | 99.79 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.79 | |
| d1q0ra_ | 297 | Aclacinomycin methylesterase RdmC {Streptomyces pu | 99.79 | |
| d1imja_ | 208 | Ccg1/TafII250-interacting factor B (Cib) {Human (H | 99.79 | |
| d1vkha_ | 263 | Putative serine hydrolase Ydr428c {Baker's yeast ( | 99.79 | |
| d1jjia_ | 311 | Carboxylesterase {Archaeon Archaeoglobus fulgidus | 99.79 | |
| d1mtza_ | 290 | Tricorn interacting factor F1 {Archaeon Thermoplas | 99.78 | |
| d1ju3a2 | 347 | Bacterial cocaine esterase N-terminal domain {Rhod | 99.78 | |
| d1c4xa_ | 281 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.77 | |
| d1tqha_ | 242 | Carboxylesterase Est {Bacillus stearothermophilus | 99.77 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 99.77 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.76 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 99.76 | |
| d1fj2a_ | 229 | Acyl protein thioesterase 1 {Human (Homo sapiens) | 99.76 | |
| d2i3da1 | 218 | Hypothetical protein Atu1826 {Agrobacterium tumefa | 99.76 | |
| d1a8qa_ | 274 | Bromoperoxidase A1 {Streptomyces aureofaciens [Tax | 99.76 | |
| d3b5ea1 | 209 | Uncharacterized protein Mll8374 {Mesorhizobium lot | 99.75 | |
| d1uk8a_ | 271 | Meta-cleavage product hydrolase CumD {Pseudomonas | 99.74 | |
| d2rhwa1 | 283 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.73 | |
| d1a88a_ | 275 | Chloroperoxidase L {Streptomyces lividans [TaxId: | 99.73 | |
| d1j1ia_ | 268 | Meta cleavage compound hydrolase CarC {Janthinobac | 99.73 | |
| d1zd3a2 | 322 | Mammalian epoxide hydrolase, C-terminal domain {Hu | 99.73 | |
| d1va4a_ | 271 | Arylesterase {Pseudomonas fluorescens [TaxId: 294] | 99.73 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.72 | |
| d1xkla_ | 258 | Salicylic acid-binding protein 2 (SABP2) {Common t | 99.72 | |
| d1bn7a_ | 291 | Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1 | 99.72 | |
| d1a8sa_ | 273 | Chloroperoxidase F {Pseudomonas fluorescens [TaxId | 99.72 | |
| d1brta_ | 277 | Bromoperoxidase A2 {Streptomyces aureofaciens [Tax | 99.71 | |
| d2r8ba1 | 203 | Uncharacterized protein Atu2452 {Agrobacterium tum | 99.71 | |
| d1uxoa_ | 186 | Hypothetical protein YdeN {Bacillus subtilis [TaxI | 99.71 | |
| d1b6ga_ | 310 | Haloalkane dehalogenase {Xanthobacter autotrophicu | 99.7 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 99.69 | |
| d3c70a1 | 256 | Hydroxynitrile lyase {Rubber tree (Hevea brasilien | 99.69 | |
| d1ehya_ | 293 | Bacterial epoxide hydrolase {Agrobacterium radioba | 99.69 | |
| d2gzsa1 | 265 | Enterobactin and salmochelin hydrolase IroE {Esche | 99.69 | |
| d1jjfa_ | 255 | Feruloyl esterase domain of the cellulosomal xylan | 99.69 | |
| d3c8da2 | 246 | Enterochelin esterase, catalytic domain {Shigella | 99.68 | |
| d1azwa_ | 313 | Proline iminopeptidase {Xanthomonas campestris, pv | 99.68 | |
| d1m33a_ | 256 | Biotin biosynthesis protein BioH {Escherichia coli | 99.68 | |
| d1hkha_ | 279 | Gamma-lactamase {Aureobacterium sp. [TaxId: 51671] | 99.67 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.66 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.65 | |
| d1sfra_ | 288 | Antigen 85a {Mycobacterium tuberculosis [TaxId: 17 | 99.65 | |
| d1auoa_ | 218 | Carboxylesterase {Pseudomonas fluorescens [TaxId: | 99.64 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.62 | |
| d1wm1a_ | 313 | Proline aminopeptidase {Serratia marcescens [TaxId | 99.61 | |
| d1r3da_ | 264 | Hypothetical protein VC1974 {Vibrio cholerae [TaxI | 99.57 | |
| d1mj5a_ | 298 | Haloalkane dehalogenase {Sphingomonas paucimobilis | 99.53 | |
| d1qlwa_ | 318 | A novel bacterial esterase {Alcaligenes sp. [TaxId | 99.52 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.52 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.48 | |
| d1wb4a1 | 273 | Feruloyl esterase domain of the cellulosomal xylan | 99.46 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.43 | |
| d1dqza_ | 280 | Antigen 85c {Mycobacterium tuberculosis [TaxId: 17 | 99.42 | |
| d1r88a_ | 267 | Antigen pt51/mpb51 {Mycobacterium tuberculosis [Ta | 99.42 | |
| d1pjaa_ | 268 | Palmitoyl protein thioesterase 2 {Human (Homo sapi | 99.4 | |
| d1pv1a_ | 299 | Hypothetical esterase YJL068C {Baker's yeast (Sacc | 99.39 | |
| d1qo7a_ | 394 | Bacterial epoxide hydrolase {Aspergillus niger [Ta | 99.38 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.37 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.33 | |
| d1ispa_ | 179 | Lipase A {Bacillus subtilis [TaxId: 1423]} | 99.31 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.31 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.3 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.3 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.27 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.27 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.26 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.25 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.24 | |
| d2b61a1 | 357 | Homoserine O-acetyltransferase {Haemophilus influe | 99.23 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.21 | |
| d2pl5a1 | 362 | Homoserine O-acetyltransferase {Leptospira interro | 99.21 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.19 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.18 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.16 | |
| d1jmkc_ | 230 | Surfactin synthetase, SrfA {Bacillus subtilis [Tax | 99.14 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.13 | |
| d2d81a1 | 318 | Polyhydroxybutyrate depolymerase {Penicillium funi | 99.13 | |
| d2h7xa1 | 283 | Picromycin polyketide synthase {Streptomyces venez | 99.1 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.08 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.07 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.07 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.07 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.06 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.04 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.04 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.03 | |
| d2vata1 | 376 | Acetyl-CoA:deacetylcephalosporin C acetyltransfera | 99.03 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.03 | |
| d1tcaa_ | 317 | Triacylglycerol lipase {Yeast (Candida antarctica) | 99.02 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.96 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 98.94 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.94 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.91 | |
| d2h7ca1 | 532 | Mammalian carboxylesterase (liver carboxylesterase | 98.9 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 98.9 | |
| d1cvla_ | 319 | Lipase {Chromobacterium viscosum [TaxId: 42739]} | 98.86 | |
| d1qe3a_ | 483 | Thermophilic para-nitrobenzyl esterase (PNB estera | 98.81 | |
| d1thga_ | 544 | Type-B carboxylesterase/lipase {Fungus (Geotrichum | 98.81 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.79 | |
| d1ex9a_ | 285 | Lipase {Pseudomonas aeruginosa [TaxId: 287]} | 98.79 | |
| d1xkta_ | 286 | Fatty acid synthase {Human (Homo sapiens) [TaxId: | 98.79 | |
| d1llfa_ | 534 | Type-B carboxylesterase/lipase {Candida cylindrace | 98.78 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.77 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.74 | |
| d1ukca_ | 517 | Esterase EstA {Aspergillus niger [TaxId: 5061]} | 98.71 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 98.7 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 98.7 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.67 | |
| d2ha2a1 | 542 | Acetylcholinesterase {Mouse (Mus musculus) [TaxId: | 98.64 | |
| d1ea5a_ | 532 | Acetylcholinesterase {Pacific electric ray (Torped | 98.64 | |
| d2bcea_ | 579 | Bile-salt activated lipase (cholesterol esterase) | 98.62 | |
| d1dx4a_ | 571 | Acetylcholinesterase {Fruit fly (Drosophila melano | 98.62 | |
| d1p0ia_ | 526 | Butyryl cholinesterase {Human (Homo sapiens) [TaxI | 98.6 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.59 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.58 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.57 | |
| d1mo2a_ | 255 | Erythromycin polyketide synthase {Saccharopolyspor | 98.56 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.47 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.47 | |
| d2dsta1 | 122 | Hypothetical protein TTHA1544 {Thermus thermophilu | 98.44 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.41 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.34 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.25 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.25 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.2 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 98.19 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 98.18 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.15 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.13 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.09 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.98 | |
| d1rp1a2 | 337 | Pancreatic lipase, N-terminal domain {Dog (Canis f | 97.97 | |
| d1ei9a_ | 279 | Palmitoyl protein thioesterase 1 {Cow (Bos taurus) | 97.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 97.92 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 97.86 | |
| d1bu8a2 | 338 | Pancreatic lipase, N-terminal domain {Rat (Rattus | 97.85 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.8 | |
| g1wht.1 | 409 | Serine carboxypeptidase II {Wheat (Triticum vulgar | 97.8 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.67 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.65 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 97.57 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.54 | |
| d1ac5a_ | 483 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 97.47 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.39 | |
| d1wpxa1 | 421 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 97.28 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.18 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.11 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 96.94 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 96.9 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 96.84 | |
| g1gxs.1 | 425 | Hydroxynitrile lyase {Sorghum (Sorghum bicolor) [T | 96.74 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 96.71 | |
| d1ivya_ | 452 | Human 'protective protein', HPP {Human (Homo sapie | 96.67 | |
| d1ku0a_ | 388 | Lipase L1 {Bacillus stearothermophilus [TaxId: 142 | 96.66 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.58 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 94.17 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 90.88 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 90.73 | |
| d1lgya_ | 265 | Triacylglycerol lipase {Rhizopus niveus [TaxId: 48 | 87.96 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 87.6 | |
| d1uwca_ | 261 | Feruloyl esterase A {Aspergillus niger [TaxId: 506 | 87.16 | |
| d3tgla_ | 265 | Triacylglycerol lipase {Rhizomucor miehei [TaxId: | 86.25 | |
| d1tiba_ | 269 | Triacylglycerol lipase {Thermomyces lanuginosus, f | 85.41 | |
| d1tiaa_ | 271 | Triacylglycerol lipase {Penicillium camembertii [T | 85.33 | |
| d1cexa_ | 197 | Cutinase {Fungus (Fusarium solani), subsp. pisi [T | 85.0 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 83.6 |
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=3.9e-32 Score=279.30 Aligned_cols=244 Identities=23% Similarity=0.360 Sum_probs=209.3
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCC
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~ 646 (826)
.+.+.||.+++++++.|++ ..++.|+||++|||++......|...++.|+++||+|+++|+|+.+++|.++.......
T Consensus 16 ~~~s~dG~~i~~~l~~p~~--~~~~~Pviv~~HGG~~~~~~~~~~~~~~~la~~G~~v~~~d~r~~~~~g~~~~~~~~~~ 93 (260)
T d2hu7a2 16 WVESFDGSRVPTYVLESGR--APTPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGD 93 (260)
T ss_dssp EEECTTSCEEEEEEEEETT--SCSSEEEEEEECSSSSCCCCSSCCHHHHHHHHHTCEEEEECCTTCSSSCHHHHHTTTTC
T ss_pred EEECCCCCEEEEEEEeCCC--CCCCceEEEEECCCCccCCCccccHHHHHHHhhccccccceeeeccccccccccccccc
Confidence 4567788999999999975 55788999999998887767778888999999999999999999999999998888888
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhc
Q 003363 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 726 (826)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 726 (826)
++..+++|+.++++++.++. +.++++|+|+|+||++++.++..+|+.+++++..+|+.++..+..........+....
T Consensus 94 ~~~~~~~D~~~~~~~l~~~~--~~~~~~i~g~s~gg~~~~~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (260)
T d2hu7a2 94 PCGGELEDVSAAARWARESG--LASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQL 171 (260)
T ss_dssp TTTHHHHHHHHHHHHHHHTT--CEEEEEEEEETHHHHHHHHHHHHSTTSSSEEEEESCCCCHHHHHHTCCHHHHHHHHHH
T ss_pred cchhhhhhhccccccccccc--ccceeeccccccccccccchhccCCcccccccccccchhhhhhhcccccccccccccc
Confidence 88888999999999999874 6789999999999999999999999999999999999987766543322111111110
Q ss_pred cCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCC
Q 003363 727 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 806 (826)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~ 806 (826)
.....+.+...+|...++++++|+|++||+.|..||+.++.+++++|+++|+++++++||+++|++..
T Consensus 172 ------------~~~~~~~~~~~~~~~~~~~~~~P~liihG~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~g~~H~~~~ 239 (260)
T d2hu7a2 172 ------------TGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHIIPDAGHAINT 239 (260)
T ss_dssp ------------HCSCHHHHHHTCGGGCGGGCCSCEEEEEETTCSSSCSHHHHHHHHHHHHTTCCEEEEEETTCCSSCCB
T ss_pred ------------cccccccccccchhhcccccCCCceeeecccCceecHHHHHHHHHHHHHCCCCeEEEEECcCCCCCCC
Confidence 01234567788999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCHHHHHHHHHHHHHHHcC
Q 003363 807 PQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 807 ~~~~~~~~~~i~~w~~~~l~ 826 (826)
.++..+++..+++||.+|||
T Consensus 240 ~e~~~~~~~~~~~fl~~hl~ 259 (260)
T d2hu7a2 240 MEDAVKILLPAVFFLATQRE 259 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHhc
Confidence 78888899999999999985
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=7.7e-32 Score=276.76 Aligned_cols=241 Identities=17% Similarity=0.266 Sum_probs=191.4
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-ccc--hHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCC
Q 003363 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSY--SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~--~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~ 646 (826)
+.+|.++++++|.|++++.++++|+||++||||+.... ..| ....+.|+++||+|+++||||++++|..+......+
T Consensus 9 ~~dg~~l~~~l~~P~~~~~~~k~Pviv~~HGGp~~~~~~~~~~~~~~~~~la~~G~~vv~~d~rGs~~~g~~~~~~~~~~ 88 (258)
T d1xfda2 9 EIDDYNLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRR 88 (258)
T ss_dssp EETTEEECCBEEBCSSCCSSSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTTTC
T ss_pred eeCCeEEEEEEEECCCcCCCCceeEEEEEcCCccccCcCCCcCcchHHHHHhcCCcEEEEeccccccccchhHhhhhhcc
Confidence 34789999999999998888999999999998654322 223 345668999999999999999999999998888888
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC----ceeEEEecCCccchhhhccCCCCCCchh
Q 003363 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDWCY 722 (826)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~p~~~~~~~~~~~~~~~~~~ 722 (826)
++..++.|+.++++++++++.+|++||+++|+|+||+++++++...++ .+++.+..+|+..+.... ....
T Consensus 89 ~g~~~~~d~~~~i~~l~~~~~id~~ri~v~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 162 (258)
T d1xfda2 89 LGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYA------SAFS 162 (258)
T ss_dssp TTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSSB------HHHH
T ss_pred chhHHHHHHHHhhhhhcccccccccceeccccCchHHHHHHHHhcCCcccceeeeeeeccccceeeeccc------cccc
Confidence 888899999999999999999999999999999999999998876654 577777777765432110 0000
Q ss_pred hhhccCcCCccCCCCCChhhHHHHhhcCcccccCCC-CCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCC
Q 003363 723 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDV 801 (826)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~ 801 (826)
...++. +. ...+.+...++...+.++ ++|+|++||+.|.+||++++.+++++|++.|+++++++||+++
T Consensus 163 ~~~~~~---------~~-~~~~~~~~~s~~~~~~~~~~~p~Li~hG~~D~~vp~~~s~~~~~~l~~~~~~~~~~~~p~~~ 232 (258)
T d1xfda2 163 ERYLGL---------HG-LDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDES 232 (258)
T ss_dssp HHHHCC---------CS-SCCSSTTTTCTHHHHTSCCSCEEEEEEETTCSSSCHHHHHHHHHHHHHTTCCCEEEEETTCC
T ss_pred cccccc---------cc-cchHHhhccchhhhhhhhhcccccccccCCCCCcCHHHHHHHHHHHHHCCCCEEEEEECCCC
Confidence 011111 00 011233445566666664 6899999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 802 HGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 802 H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
|++........+++.+++||+++||
T Consensus 233 H~~~~~~~~~~~~~~~~~f~~~~~~ 257 (258)
T d1xfda2 233 HYFTSSSLKQHLYRSIINFFVECFR 257 (258)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTTTC
T ss_pred CCCCCCcCHHHHHHHHHHHHHHhhC
Confidence 9998777777788999999999986
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.97 E-value=1.6e-30 Score=266.78 Aligned_cols=246 Identities=17% Similarity=0.304 Sum_probs=202.9
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc---cchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcC
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 643 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~---~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~ 643 (826)
.+...+|..+.+.+++|+++++.+++|+||++|||++..... .+......++++||+|+.+||||+++++..+....
T Consensus 7 ~~~~~~~~~~~~~l~lP~~~~~~kk~P~iv~~HGGp~~~~~~~~~~~~~~~~~~a~~g~~V~~~d~rg~~~~~~~~~~~~ 86 (258)
T d2bgra2 7 DFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAI 86 (258)
T ss_dssp EEEEETTEEEEEEEEECTTCCTTSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEEEECCTTCSSSCHHHHGGG
T ss_pred EEEEeCCcEEEEEEEECCCcCCCCCeeEEEEEcCCCCcccCCCccCcCHHHHHHhcCCcEEEeecccccCCcchHHHHhh
Confidence 445557889999999999998889999999999985543222 33345567789999999999999999999888888
Q ss_pred CCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhh
Q 003363 644 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYV 723 (826)
Q Consensus 644 ~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~ 723 (826)
..+++..++.|+.++++++.++..+|+++|+++|+|+||.+++.++..+|+++.+++..++.......... ...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~i~i~G~S~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 160 (258)
T d2bgra2 87 NRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSV------YTE 160 (258)
T ss_dssp TTCTTSHHHHHHHHHHHHHTTSSSEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSBHH------HHH
T ss_pred hhhhhhHHHHHHHHHHHHhhhhcccccccccccCcchhhcccccccccCCCcceEEEEeeccccccccccc------ccc
Confidence 88888889999999999999999999999999999999999999999999999999888877654322110 000
Q ss_pred hhccCcCCccCCCCCChhhHHHHhhcCcccccCCCC-CcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCC
Q 003363 724 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH 802 (826)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H 802 (826)
...+ ........+.+...+++..+.+++ +|+|++||++|.+||+.++++++++|+++|+++++++||+++|
T Consensus 161 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~hG~~D~~Vp~~~s~~~~~~l~~~g~~~~~~~~~g~~H 232 (258)
T d2bgra2 161 RYMG--------LPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDH 232 (258)
T ss_dssp HHHC--------CCSTTTTHHHHHHSCSGGGGGGGGGSEEEEEEETTCSSSCTHHHHHHHHHHHHHTCCCEEEEETTCCT
T ss_pred hhcc--------cccchhhHHHhhcccccccccccccCChheeeecCCCcccHHHHHHHHHHHHHCCCCEEEEEECCCCC
Confidence 0111 011234456677788888888875 7999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 803 GIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 803 ~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
++........++..+.+||+++|.
T Consensus 233 ~~~~~~~~~~~~~~i~~fl~~~l~ 256 (258)
T d2bgra2 233 GIASSTAHQHIYTHMSHFIKQCFS 256 (258)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCccHHHHHHHHHHHHHHHhc
Confidence 988777777889999999999984
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.93 E-value=1.1e-24 Score=225.44 Aligned_cols=250 Identities=20% Similarity=0.227 Sum_probs=189.9
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch-HHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCC
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 645 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~-~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~ 645 (826)
.++..||.+|+++++.|++++.++++|+||++|||++......+. .....++..|+.++..++++...++.........
T Consensus 11 ~~~s~DG~~i~~~l~~P~~~~~~~~~P~iv~~HGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (280)
T d1qfma2 11 FYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGIL 90 (280)
T ss_dssp EEECTTSCEEEEEEEEETTCCCSSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSSTTHHHHHHTTSG
T ss_pred EEECCCCCEEEEEEEEcCCCCCCCCeEEEEEECCCCcccCCCCcchhhhhhhcccceeeeccccccccccchhhhhcccc
Confidence 566778999999999999988899999999999998876655443 3455667788999999999887776666555554
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhh
Q 003363 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 725 (826)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~ 725 (826)
.......++...+..+...+...+...++++|+|.||.++..++...++.+++++...++.++...........+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (280)
T d1qfma2 91 ANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYG 170 (280)
T ss_dssp GGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGHHHHC
T ss_pred cccccccchhhhhhhhhhhhcccccccccccccccccchhhhhhhcccchhhheeeeccccchhhhccccccccceeccc
Confidence 55555567777777777777778889999999999999999999999999999999999988765544333222211111
Q ss_pred ccCcCCccCCCCCChhhHHHHhhcCcc------cccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHh-------CCCCE
Q 003363 726 YGSKGKDSFTESPSVEDLTRFHSKSPI------SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE-------KGVET 792 (826)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~sp~------~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~-------~g~~~ 792 (826)
. ....+........+|. ..+....+|+||+||++|.+||+.++++++++|++ .|+++
T Consensus 171 ~----------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~pP~LiihG~~D~~Vp~~~s~~l~~aL~~~g~~~~~~~~~~ 240 (280)
T d1qfma2 171 C----------SDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPL 240 (280)
T ss_dssp C----------TTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTTSTTCCSCE
T ss_pred C----------CCcccccccccccccccccchhhhcccCCCceEEeecccCCCCCHHHHHHHHHHHHHhhhhhhcCCCcE
Confidence 0 1122333344444444 33444456899999999999999999999999964 47889
Q ss_pred EEEEeCCCCCCCCCCCC-HHHHHHHHHHHHHHHcC
Q 003363 793 KVIVFPNDVHGIERPQS-DFESFLNIGLWFKKYCK 826 (826)
Q Consensus 793 ~~~~~p~~~H~~~~~~~-~~~~~~~i~~w~~~~l~ 826 (826)
++++||++||++..+.. ..+.+.++++||++|||
T Consensus 241 ~l~~~~~~gHgf~~~~~~~~~~~~~~~~fl~k~L~ 275 (280)
T d1qfma2 241 LIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 275 (280)
T ss_dssp EEEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeCcCCCCCCCcHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999876543 34667789999999996
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=6.5e-24 Score=223.93 Aligned_cols=241 Identities=18% Similarity=0.180 Sum_probs=171.2
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCC
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~ 646 (826)
++...+|.+++++++.|+ ..++.|+||++||+++. ...+...+..|+++||+|+++|+||.+.++..........
T Consensus 60 ~~~~~dg~~i~~~l~~P~---~~~~~P~vv~~HG~~~~--~~~~~~~~~~la~~Gy~vi~~D~rG~G~s~~~~~~~~~~~ 134 (318)
T d1l7aa_ 60 TYKSFGNARITGWYAVPD---KEGPHPAIVKYHGYNAS--YDGEIHEMVNWALHGYATFGMLVRGQQRSEDTSISPHGHA 134 (318)
T ss_dssp EEEEGGGEEEEEEEEEES---SCSCEEEEEEECCTTCC--SGGGHHHHHHHHHTTCEEEEECCTTTSSSCCCCCCSSCCS
T ss_pred EEECCCCcEEEEEEEecC---CCCCceEEEEecCCCCC--ccchHHHHHHHHHCCCEEEEEeeCCCCCCCCCcccchhhh
Confidence 455567899999999998 46789999999997765 4567778889999999999999999776654432211111
Q ss_pred CC--------------cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCcc-chhhh
Q 003363 647 VG--------------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC-NLALM 711 (826)
Q Consensus 647 ~~--------------~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~-~~~~~ 711 (826)
.. ...+.|...+++++..++.+|+++|+++|+|+||.+++..+...++ ++++++..|.. ++...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~v~~~~i~~~G~s~Gg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 213 (318)
T d1l7aa_ 135 LGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAVADYPYLSNFERA 213 (318)
T ss_dssp SSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSC-CSEEEEESCCSCCHHHH
T ss_pred hcchhhchhhhhhhhhHHHHHHHHHHHHHHHhcccccCcceEEEeeccccHHHHHHhhcCcc-cceEEEeccccccHHHH
Confidence 11 1125688889999999998999999999999999999999998765 55555555543 32222
Q ss_pred ccCCCCCCchhhhhccCcCCccCCCCC--ChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCC
Q 003363 712 VGTTDIPDWCYVESYGSKGKDSFTESP--SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG 789 (826)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g 789 (826)
........+.....+.. ..... ..+........++...++++++|+||+||++|.+||++++.++++++.
T Consensus 214 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~--- 285 (318)
T d1l7aa_ 214 IDVALEQPYLEINSFFR-----RNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPSTVFAAYNHLE--- 285 (318)
T ss_dssp HHHCCSTTTTHHHHHHH-----HSCCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHHHHCC---
T ss_pred hhcccccccchhhhhhh-----ccccccccccccccccccccccccccCCCCEEEEEECCCCCcCHHHHHHHHHHcC---
Confidence 11111111111000000 00000 011222334456677789999999999999999999999999988774
Q ss_pred CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 790 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 790 ~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
.++++++||+++|.+. .+..+++++||++|||
T Consensus 286 ~~~~l~~~~~~gH~~~-----~~~~~~~~~fl~~~Lk 317 (318)
T d1l7aa_ 286 TKKELKVYRYFGHEYI-----PAFQTEKLAFFKQILK 317 (318)
T ss_dssp SSEEEEEETTCCSSCC-----HHHHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCCc-----HHHHHHHHHHHHHhCC
Confidence 4689999999999764 4678899999999997
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=3.7e-22 Score=204.98 Aligned_cols=263 Identities=16% Similarity=0.204 Sum_probs=197.5
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cC
Q 003363 109 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ 187 (826)
Q Consensus 109 ~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~ 187 (826)
.+|||+..... ++...+||++++ .|.+.++++..+ ..+..|+|||||++|||++... +..+++.+. .+
T Consensus 4 ~~iay~~~~~~---~~~~~~l~i~d~--dG~~~~~l~~~~-----~~~~sP~wSPDGk~IAf~~~~~-~~~~~~~~~~~~ 72 (269)
T d2hqsa1 4 TRIAYVVQTNG---GQFPYELRVSDY--DGYNQFVVHRSP-----QPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLAN 72 (269)
T ss_dssp CEEEEEEECSS---SSCCEEEEEEET--TSCSCEEEEEES-----SCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTT
T ss_pred CeEEEEEEeCC---CCceEEEEEEcC--CCCCcEEEecCC-----CceeeeEECCCCCEEEEEEeec-cCcceeeeeccc
Confidence 68999765542 344568999875 566778888776 5578999999999999998765 566777777 55
Q ss_pred CceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccC
Q 003363 188 SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY 267 (826)
Q Consensus 188 ~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~ 267 (826)
+..++++...... ..+.|||||++|++.+...
T Consensus 73 ~~~~~~~~~~~~~----------~~~~~spdg~~i~~~~~~~-------------------------------------- 104 (269)
T d2hqsa1 73 GAVRQVASFPRHN----------GAPAFSPDGSKLAFALSKT-------------------------------------- 104 (269)
T ss_dssp CCEEEEECCSSCE----------EEEEECTTSSEEEEEECTT--------------------------------------
T ss_pred CceeEEeeeeccc----------ccceecCCCCeeeEeeecC--------------------------------------
Confidence 6666666554444 6789999999999987543
Q ss_pred CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccc
Q 003363 268 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (826)
Q Consensus 268 ~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (826)
....+............. .........+.|+++++. +++++... ...+|+..++
T Consensus 105 ---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~------------g~~~i~~~~~----- 158 (269)
T d2hqsa1 105 ---GSLNLYVMDLASGQIRQV--TDGRSNNTEPTWFPDSQN----LAFTSDQA------------GRPQVYKVNI----- 158 (269)
T ss_dssp ---SSCEEEEEETTTCCEEEC--CCCSSCEEEEEECTTSSE----EEEEECTT------------SSCEEEEEET-----
T ss_pred ---Cccceeecccccccceee--eecccccccccccccccc----ceeccccc------------CCceEeeeec-----
Confidence 224555566555555555 444555667889999998 88887432 2347999998
Q ss_pred hhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeee
Q 003363 348 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 427 (826)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 427 (826)
+++...+++........|.|||||++|+|.+.+. +...|++++..++....+....
T Consensus 159 ------------~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~---- 214 (269)
T d2hqsa1 159 ------------NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG--------GQQHIAKQDLATGGVQVLSSTF---- 214 (269)
T ss_dssp ------------TSSCCEECCCSSSEEEEEEECTTSSEEEEEEECS--------SCEEEEEEETTTCCEEECCCSS----
T ss_pred ------------ccccceeeecccccccccccccccceeEEEeecC--------CceeeeEeecccccceEeecCc----
Confidence 7778888888888888999999999999998774 4568999987765543222111
Q ss_pred eeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEee
Q 003363 428 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTL 497 (826)
Q Consensus 428 ~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~ 497 (826)
....+.|||||+.|+|.+...+...||+++++++..++|+...+.+..+.|||
T Consensus 215 -----------------~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 215 -----------------LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 267 (269)
T ss_dssp -----------------SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred -----------------cccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCC
Confidence 12356899999999999998899999999999999999999887666667776
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.1e-23 Score=231.03 Aligned_cols=362 Identities=15% Similarity=0.101 Sum_probs=221.8
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003363 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (826)
Q Consensus 103 ~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (826)
.+||||++|.|..+....-..+....+|++++.+. ...+|+..... ......+.|||||++|||+++++ +|
T Consensus 67 ~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~--~~~~l~~~~~~--~~~l~~~~wSPDG~~iafv~~~n-----l~ 137 (465)
T d1xfda1 67 EISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG--DPQSLDPPEVS--NAKLQYAGWGPKGQQLIFIFENN-----IY 137 (465)
T ss_dssp EECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC--CCEECCCTTCC--SCCCSBCCBCSSTTCEEEEETTE-----EE
T ss_pred EECCCCCeEEEEEcccceeEeeccccEEEEEccCC--ceeeccCccCC--ccccceeeeccCCceEEEEecce-----EE
Confidence 45999999999876444334445678899887543 34455432211 13456799999999999998765 88
Q ss_pred EEe-cCCceeEEEecCC------CccccccCCCcc---cceeecCCCCeEEEEeecCCCCCCCcc-CCCCCCCCCCccCC
Q 003363 183 ELW-SQSQLEKEFHVPQ------TVHGSVYADGWF---EGISWNSDETLIAYVAEEPSPSKPTFS-LGSTKGGSSDKDCN 251 (826)
Q Consensus 183 ~i~-~~~~~~~~~~~~~------~~~g~v~~~~~~---~~~~wSPDg~~ia~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 251 (826)
.+. .++...+++.-.. +..+++|.++-+ .++.|||||++|||...+..... .+. ..+.. ...+...
T Consensus 138 ~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~-~~~~~~~~~--~~~p~~~ 214 (465)
T d1xfda1 138 YCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVP-IMELPTYTG--SIYPTVK 214 (465)
T ss_dssp EESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSC-EEEECCCSS--SSSCCCE
T ss_pred EEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccc-eeecccccc--cccceee
Confidence 777 5667777775321 223445554432 36789999999999986654322 111 11110 0000000
Q ss_pred CCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCC-----CCccceEEEeeCCCCCccEEEEEeecCcceeee
Q 003363 252 SWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLG 326 (826)
Q Consensus 252 ~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~-----~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g 326 (826)
...| |..|+. .....|+++|++++..+.....+. +.....+.|+||++. +++..++...
T Consensus 215 ----~~~Y-p~~G~~---np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~----~~~~~nR~q~---- 278 (465)
T d1xfda1 215 ----PYHY-PKAGSE---NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKV----AVTWLNRAQN---- 278 (465)
T ss_dssp ----EEEC-CBTTSC---CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEE----EEEEEETTSC----
T ss_pred ----eeec-cccCCC---CCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeE----EEEEEccccc----
Confidence 1111 122221 123579999998887654421111 223456899999986 6665544332
Q ss_pred eeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC--C----ccccCceecCCCCEEEEEeccCCCCCCCC
Q 003363 327 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES--I----SSAFFPRFSPDGKFLVFLSAKSSVDSGAH 400 (826)
Q Consensus 327 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~--~----~~~~~p~~SpDG~~l~f~s~~~~~~~g~~ 400 (826)
...|+.+|. .+|+++.+... . .....|.|+|||+.++|+.....
T Consensus 279 -------~~~i~~~d~-----------------~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~------ 328 (465)
T d1xfda1 279 -------VSILTLCDA-----------------TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ------ 328 (465)
T ss_dssp -------EEEEEEEET-----------------TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC------
T ss_pred -------cceEEEEcC-----------------CCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeee------
Confidence 236888887 77777666432 1 12467999999999988754321
Q ss_pred cccceEEEEeC-------CCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC--CeEEEE
Q 003363 401 SATDSLHRIDW-------PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG--SSQVII 471 (826)
Q Consensus 401 ~~~~~l~~~d~-------~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~--~~~~l~ 471 (826)
.+..+++.+++ .++..+++|.+..+|..+ +.|..+++.|||.+... ...+||
T Consensus 329 ~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i-------------------~~~d~~~~~vyF~a~~~~p~~~hly 389 (465)
T d1xfda1 329 GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKI-------------------LAYDEKGNKIYFLSTEDLPRRRQLY 389 (465)
T ss_dssp SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEE-------------------EEEETTTTEEEEEESSSCTTCCEEE
T ss_pred cccCceEEEEeccccccCCCceeEEeccCCceEEEE-------------------EEEcCCCCEEEEEEeCCCCCceEEE
Confidence 23456666644 233345677766665542 35888999999988654 567999
Q ss_pred EEECCCCcE-EEecCC---CCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhhhh
Q 003363 472 SVNVSSGEL-LRITPA---ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKS 547 (826)
Q Consensus 472 ~vdl~tg~~-~~lt~~---~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (826)
+++++++.. ++|+.. .+.+....||+++++++..+++++.|+ +.+.+...++ .+. ..+.|+++++
T Consensus 390 ~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~-~~~~~~~~~~---~~~-------~Le~N~~l~~ 458 (465)
T d1xfda1 390 SANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPM-VTVHNTTDKK---KMF-------DLETNEHVKK 458 (465)
T ss_dssp EECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCC-EEEEETTTCC---EEE-------EEECCHHHHH
T ss_pred EEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCe-EEEEECCCCC---EEE-------EEcCCHHHHH
Confidence 999987654 445432 223456789999999999999999887 5555544332 111 1134777777
Q ss_pred ccccc
Q 003363 548 LLSSR 552 (826)
Q Consensus 548 ~l~~~ 552 (826)
.|+..
T Consensus 459 ~l~~~ 463 (465)
T d1xfda1 459 AINDR 463 (465)
T ss_dssp HHHTS
T ss_pred HHHhc
Confidence 66554
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=3.3e-23 Score=219.16 Aligned_cols=242 Identities=13% Similarity=0.139 Sum_probs=170.1
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCC-
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG- 645 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~- 645 (826)
++.+.+|..++++++.|++ ..++.|+||++||++.... +......|+++||+|+++|+||.+.++.........
T Consensus 59 ~~~s~dG~~l~~~l~~P~~--~~~~~P~Vv~~hG~~~~~~---~~~~~~~~a~~G~~v~~~D~rG~G~s~~~~~~~~~~~ 133 (322)
T d1vlqa_ 59 TFSGYRGQRIKGWLLVPKL--EEEKLPCVVQYIGYNGGRG---FPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPE 133 (322)
T ss_dssp EEECGGGCEEEEEEEEECC--SCSSEEEEEECCCTTCCCC---CGGGGCHHHHTTCEEEEECCTTCCCSSSCCCCCBCCS
T ss_pred EEECCCCcEEEEEEEeccC--CCCCccEEEEecCCCCCcC---cHHHHHHHHhCCCEEEEeeccccCCCCCCcccccccc
Confidence 4566678999999999985 4578999999999776532 223345789999999999999977654432111000
Q ss_pred --------------------CCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCc
Q 003363 646 --------------------KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (826)
Q Consensus 646 --------------------~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~ 705 (826)
......+.|+.++++++..++.+|++|++++|+|+||++++.+++..+ +++++++.+|.
T Consensus 134 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~a~~~~~~~~~~d~~ri~~~G~S~GG~~a~~~~~~~~-~~~a~v~~~~~ 212 (322)
T d1vlqa_ 134 GPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK-KAKALLCDVPF 212 (322)
T ss_dssp SSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCS-SCCEEEEESCC
T ss_pred ccccccccchhhhchhhhhhhhhHHHHHHHHHHHHHHHhcCCcCchhccccccccchHHHHHHHhcCC-CccEEEEeCCc
Confidence 001123578999999999999899999999999999999998888765 68888887775
Q ss_pred cch-hhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHH
Q 003363 706 CNL-ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARA 784 (826)
Q Consensus 706 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~ 784 (826)
... ...........+.....+.. ..........+.+...+|...+.++++|+|++||++|.++|++++.+++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~d~~~~a~~i~~P~Lv~~G~~D~~vp~~~~~~~~~~ 287 (322)
T d1vlqa_ 213 LCHFRRAVQLVDTHPYAEITNFLK-----THRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNICPPSTVFAAYNY 287 (322)
T ss_dssp SCCHHHHHHHCCCTTHHHHHHHHH-----HCTTCHHHHHHHHHTTCHHHHHTTCCSCEEEEEETTCSSSCHHHHHHHHHH
T ss_pred cccHHHHHhhccccchhhHHhhhh-----cCcchhhhHHHHhhhhhHHHHHhcCCCCEEEEEeCCCCCcCHHHHHHHHHH
Confidence 432 22221111111111111000 001111233445556789999999999999999999999999998877776
Q ss_pred HHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 785 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 785 l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
+ +.++++++||+++|... ........++||+++|+
T Consensus 288 ~---~~~~~l~~~p~~~H~~~----~~~~~~~~~~~l~~~l~ 322 (322)
T d1vlqa_ 288 Y---AGPKEIRIYPYNNHEGG----GSFQAVEQVKFLKKLFE 322 (322)
T ss_dssp C---CSSEEEEEETTCCTTTT----HHHHHHHHHHHHHHHHC
T ss_pred C---CCCeEEEEECCCCCCCc----cccCHHHHHHHHHHHhC
Confidence 5 45799999999999763 22334567899999985
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.90 E-value=7.4e-23 Score=219.05 Aligned_cols=228 Identities=15% Similarity=0.170 Sum_probs=162.8
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcch
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~ 651 (826)
+|.++.++++.|+ ..++.|+||++||.... ...+....+.|+++||+|+++|+||+ |.+... . ......
T Consensus 114 dg~~l~g~l~~P~---~~~~~P~Vi~~hG~~~~--~e~~~~~~~~l~~~G~~vl~~D~~G~---G~s~~~--~-~~~~~~ 182 (360)
T d2jbwa1 114 DGIPMPVYVRIPE---GPGPHPAVIMLGGLEST--KEESFQMENLVLDRGMATATFDGPGQ---GEMFEY--K-RIAGDY 182 (360)
T ss_dssp TTEEEEEEEECCS---SSCCEEEEEEECCSSCC--TTTTHHHHHHHHHTTCEEEEECCTTS---GGGTTT--C-CSCSCH
T ss_pred CCcccceEEEecC---CCCCceEEEEeCCCCcc--HHHHHHHHHHHHhcCCEEEEEccccc---cccCcc--c-cccccH
Confidence 5788999999997 46789999999996544 34456678889999999999999995 443211 1 111122
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCC
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 731 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (826)
..++.++++++.....+|.+||+|+|+|+||++++.+++..| +++++|+.+|+.++....... ......+
T Consensus 183 ~~~~~~v~d~l~~~~~vd~~rI~l~G~S~GG~~Al~~A~~~p-ri~a~V~~~~~~~~~~~~~~~----~~~~~~~----- 252 (360)
T d2jbwa1 183 EKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEP-RLAACISWGGFSDLDYWDLET----PLTKESW----- 252 (360)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCCSCSTTGGGSC----HHHHHHH-----
T ss_pred HHHHHHHHHHHHhcccccccceeehhhhcccHHHHHHhhcCC-CcceEEEEcccccHHHHhhhh----hhhhHHH-----
Confidence 346677889999988899999999999999999999999876 689999999887653221110 0000000
Q ss_pred ccCCCCCChhh--HHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCC
Q 003363 732 DSFTESPSVED--LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQS 809 (826)
Q Consensus 732 ~~~~~~~~~~~--~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~ 809 (826)
.........+. .......+....+.+|++|+|++||++|. +|++++.++++++... +++++++++++|.....
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~-vp~~~~~~l~~~~~~~--~~~l~~~~~g~H~~~~~-- 327 (360)
T d2jbwa1 253 KYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VPLSFVDTVLELVPAE--HLNLVVEKDGDHCCHNL-- 327 (360)
T ss_dssp HHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSS-SCTHHHHHHHHHSCGG--GEEEEEETTCCGGGGGG--
T ss_pred HHhccCCchHHHHHHHHhhcchhhhHhhCCCCEEEEEeCCCC-cCHHHHHHHHHhcCCC--CeEEEEECCCCcCCCcC--
Confidence 00111112121 12233445566788999999999999997 6999999999988643 57888999999975422
Q ss_pred HHHHHHHHHHHHHHHc
Q 003363 810 DFESFLNIGLWFKKYC 825 (826)
Q Consensus 810 ~~~~~~~i~~w~~~~l 825 (826)
..+....+.+||.++|
T Consensus 328 ~~~~~~~i~dWl~~~L 343 (360)
T d2jbwa1 328 GIRPRLEMADWLYDVL 343 (360)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh
Confidence 2356778999999987
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Probab=99.87 E-value=1.7e-21 Score=198.52 Aligned_cols=189 Identities=14% Similarity=0.114 Sum_probs=148.8
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHH
Q 003363 577 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL 656 (826)
Q Consensus 577 ~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~ 656 (826)
.+.+|.|.+ ..++++|+||++||+... ...+..+++.|+++||.|+++|++|..... .....|+.
T Consensus 38 ~~~ly~P~~-~~~g~~P~Vv~~HG~~g~--~~~~~~~a~~lA~~Gy~V~~~d~~~~~~~~------------~~~~~d~~ 102 (260)
T d1jfra_ 38 GGTIYYPTS-TADGTFGAVVISPGFTAY--QSSIAWLGPRLASQGFVVFTIDTNTTLDQP------------DSRGRQLL 102 (260)
T ss_dssp CEEEEEESC-CTTCCEEEEEEECCTTCC--GGGTTTHHHHHHTTTCEEEEECCSSTTCCH------------HHHHHHHH
T ss_pred CEEEEEcCC-CCCCCccEEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEeeCCCcCCc------------hhhHHHHH
Confidence 467888975 245689999999997654 446677889999999999999999854321 12367888
Q ss_pred HHHHHHHHc----CCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCc
Q 003363 657 TAIDHVIDM----GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 732 (826)
Q Consensus 657 ~~i~~l~~~----~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (826)
++++++.+. +.+|.+||+++|||+||.+++.++...+ +++++|..+|...
T Consensus 103 ~~~~~l~~~~~~~~~vD~~rI~v~G~S~GG~~al~aa~~~~-~~~A~v~~~~~~~------------------------- 156 (260)
T d1jfra_ 103 SALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRT-SLKAAIPLTGWNT------------------------- 156 (260)
T ss_dssp HHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCT-TCSEEEEESCCCS-------------------------
T ss_pred HHHHHHHhhhhhhccccccceEEEeccccchHHHHHHhhhc-cchhheeeecccc-------------------------
Confidence 899998884 5589999999999999999999998865 6888887776421
Q ss_pred cCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHH
Q 003363 733 SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFE 812 (826)
Q Consensus 733 ~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~ 812 (826)
.....++++|+|++||++|.++|+++..+.+......+.+.+++.++|++|.+....+. .
T Consensus 157 -------------------~~~~~~~~~P~l~i~G~~D~~vp~~~~~~~~~~~~~~~~~~~~~~i~ga~H~~~~~~~~-~ 216 (260)
T d1jfra_ 157 -------------------DKTWPELRTPTLVVGADGDTVAPVATHSKPFYESLPGSLDKAYLELRGASHFTPNTSDT-T 216 (260)
T ss_dssp -------------------CCCCTTCCSCEEEEEETTCSSSCTTTTHHHHHHHSCTTSCEEEEEETTCCTTGGGSCCH-H
T ss_pred -------------------cccccccccceeEEecCCCCCCCHHHHHHHHHHhcccCCCEEEEEECCCccCCCCCChH-H
Confidence 01224567999999999999999977555555555567889999999999988766654 6
Q ss_pred HHHHHHHHHHHHcC
Q 003363 813 SFLNIGLWFKKYCK 826 (826)
Q Consensus 813 ~~~~i~~w~~~~l~ 826 (826)
+.+.++.||++||+
T Consensus 217 ~~~~~~~wl~~~L~ 230 (260)
T d1jfra_ 217 IAKYSISWLKRFID 230 (260)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc
Confidence 77889999999985
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.86 E-value=1.9e-20 Score=208.80 Aligned_cols=360 Identities=11% Similarity=0.029 Sum_probs=215.8
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCe
Q 003363 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 180 (826)
Q Consensus 101 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 180 (826)
...+||||++|+|..+...+-..+....+|++++. +++..+++..+ ..+..++|||||++|||+++..
T Consensus 66 ~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~--~~~~~~l~~~~-----~~~~~~~~SPDG~~ia~~~~~~----- 133 (470)
T d2bgra1 66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN--KRQLITEERIP-----NNTQWVTWSPVGHKLAYVWNND----- 133 (470)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT--TTEECCSSCCC-----TTEEEEEECSSTTCEEEEETTE-----
T ss_pred eeEECCCCCEEEEEECCcceeeeccCceEEEEECC--CCcccccccCC-----ccccccccccCcceeeEeeccc-----
Confidence 34559999999998776555555667788998874 34556666555 5688999999999999997754
Q ss_pred EEEEe-cCCceeEEEecCC------CccccccCC---CcccceeecCCCCeEEEEeecCCCCCCCcc-CCCCCCCCCCcc
Q 003363 181 QFELW-SQSQLEKEFHVPQ------TVHGSVYAD---GWFEGISWNSDETLIAYVAEEPSPSKPTFS-LGSTKGGSSDKD 249 (826)
Q Consensus 181 ~~~i~-~~~~~~~~~~~~~------~~~g~v~~~---~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~-~~~~~~~~~~~~ 249 (826)
++..+ .++...+++.... +..+++|.. +....+.|||||++|||.+.+..... .+. ............
T Consensus 134 l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~-~~~~~~~~~~~~~~~~ 212 (470)
T d2bgra1 134 IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVP-LIEYSFYSDESLQYPK 212 (470)
T ss_dssp EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCC-EEEEEECCSTTCSSCE
T ss_pred ceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCc-eEEEEeeccCCCCCCe
Confidence 66666 5566565553211 111222221 12356889999999999987654321 111 000000000000
Q ss_pred CCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC----------CCCCCccceEEEeeCCCCCccEEEEEeec
Q 003363 250 CNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG----------IPKSLSVGQVVWAPLNEGLHQYLVFVGWS 319 (826)
Q Consensus 250 ~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~----------~~~~~~~~~~~wSPDg~~~~~~lvf~~~~ 319 (826)
.. ... .+..|+ ......++++++.+++...+.. ...+.....+.|+++++. +++...+
T Consensus 213 ~~----~~~-~~~~g~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~----~~~~~~r 280 (470)
T d2bgra1 213 TV----RVP-YPKAGA---VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERI----SLQWLRR 280 (470)
T ss_dssp EE----EEE-CCBTTS---CCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEE----EEEEEES
T ss_pred ee----eec-cccccc---cCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCce----eEEEeec
Confidence 00 000 011121 1133579999998886544310 112233457899999986 6665543
Q ss_pred CcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCC------------CCccccCceecCCCCEE-
Q 003363 320 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE------------SISSAFFPRFSPDGKFL- 386 (826)
Q Consensus 320 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~------------~~~~~~~p~~SpDG~~l- 386 (826)
..... ...++.+|. .++....+.. .......|.|+++++..
T Consensus 281 ~~~~~---------~~~~~~~d~-----------------~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 334 (470)
T d2bgra1 281 IQNYS---------VMDICDYDE-----------------SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFY 334 (470)
T ss_dssp STTEE---------EEEEEEEET-----------------TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEE
T ss_pred cCCce---------EEEEEEecC-----------------CCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcE
Confidence 32211 114555665 4444433321 11234578999988765
Q ss_pred EEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC-
Q 003363 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG- 465 (826)
Q Consensus 387 ~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~- 465 (826)
++.+.++ +..+||+++..++..+.++.+...+.. .++.|++.|||++...
T Consensus 335 ~~~s~~d--------g~~~ly~~~~~g~~~~~lt~g~~~v~~---------------------~~~~d~~~iyf~a~~~~ 385 (470)
T d2bgra1 335 KIISNEE--------GYRHICYFQIDKKDCTFITKGTWEVIG---------------------IEALTSDYLYYISNEYK 385 (470)
T ss_dssp EEEECTT--------SCEEEEEEETTCSCCEESCCSSSCEEE---------------------EEEECSSEEEEEESCGG
T ss_pred EEEeccC--------cCceeEEEeccCCceeeeccCCeeEEE---------------------EEEECCCEEEEEEecCC
Confidence 4555543 457899999988887777766544333 2455778898887543
Q ss_pred ---CeEEEEEEECCC-CcEEEecCC----CCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCC
Q 003363 466 ---SSQVIISVNVSS-GELLRITPA----ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSP 537 (826)
Q Consensus 466 ---~~~~l~~vdl~t-g~~~~lt~~----~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~ 537 (826)
...+||++++++ ++.++|+.. ...+....|||||++++..++++..|+. .+.+...+...+.
T Consensus 386 ~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~-~l~~~~~g~~v~~--------- 455 (470)
T d2bgra1 386 GMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLY-TLHSSVNDKGLRV--------- 455 (470)
T ss_dssp GCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEE-EEEETTTTEEEEE---------
T ss_pred CCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeE-EEEECCCCCEEEE---------
Confidence 356899999986 467777642 2245567899999999999999999984 4555443321122
Q ss_pred CCCCchhhhhcccc
Q 003363 538 ISRCPEKVKSLLSS 551 (826)
Q Consensus 538 ~~~~~~~~~~~l~~ 551 (826)
| +.|.++.+.|+.
T Consensus 456 l-e~n~~l~~~l~~ 468 (470)
T d2bgra1 456 L-EDNSALDKMLQN 468 (470)
T ss_dssp E-ECCHHHHHHHTT
T ss_pred E-eccHHHHHHHHh
Confidence 2 336767666543
|
| >d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: XC6422 protein species: Xanthomonas campestris [TaxId: 339]
Probab=99.85 E-value=2.2e-20 Score=182.50 Aligned_cols=196 Identities=12% Similarity=0.099 Sum_probs=144.1
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCC---CCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCc
Q 003363 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPH---SVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (826)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~---~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~ 649 (826)
...+++.+..|.. +...+.+++|++|+.+. +.....+...++.|+++||.|+.+||||.+.+...+ ....
T Consensus 17 ~G~l~~~~~~p~~-~~~~~~~~~vl~Hph~~~GG~~~~~~~~~la~~l~~~G~~vlrfd~RG~G~S~g~~------~~~~ 89 (218)
T d2fuka1 17 VGPLDVAVDLPEP-DVAVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAGSF------DHGD 89 (218)
T ss_dssp TEEEEEEEECCCT-TSCCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTSTTCCSCC------CTTT
T ss_pred CccEEEEEEcCCC-CCCCCCcEEEEECCCCCCCcCCCChHHHHHHHHHHHcCCeEEEeecCCCccCCCcc------CcCc
Confidence 3478888888864 23455677888985332 111223456778899999999999999966543322 2234
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCc
Q 003363 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 729 (826)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (826)
...+|+.++++|+.++. +.++++++|+||||.+++.++.+. ..+++|+.+|..+...+
T Consensus 90 ~~~~D~~a~~~~~~~~~--~~~~v~l~G~S~Gg~va~~~a~~~--~~~~lil~ap~~~~~~~------------------ 147 (218)
T d2fuka1 90 GEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRWDF------------------ 147 (218)
T ss_dssp HHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTBCC------------------
T ss_pred chHHHHHHHHHHHhhcc--cCceEEEEEEcccchhhhhhhccc--ccceEEEeCCcccchhh------------------
Confidence 46889999999999873 567999999999999999888764 36788888875431000
Q ss_pred CCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCC
Q 003363 730 GKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQS 809 (826)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~ 809 (826)
. ..++.+|+|+|||++|.+||++++.++++++.. +.+++++||++|.|.. .
T Consensus 148 --------------------~----~~~~~~P~Lvi~G~~D~~vp~~~~~~l~~~~~~---~~~l~~i~ga~H~f~~--~ 198 (218)
T d2fuka1 148 --------------------S----DVQPPAQWLVIQGDADEIVDPQAVYDWLETLEQ---QPTLVRMPDTSHFFHR--K 198 (218)
T ss_dssp --------------------T----TCCCCSSEEEEEETTCSSSCHHHHHHHHTTCSS---CCEEEEETTCCTTCTT--C
T ss_pred --------------------h----ccccccceeeEecCCCcCcCHHHHHHHHHHccC---CceEEEeCCCCCCCCC--C
Confidence 0 013458999999999999999999888766543 5789999999998764 3
Q ss_pred HHHHHHHHHHHHHHHcC
Q 003363 810 DFESFLNIGLWFKKYCK 826 (826)
Q Consensus 810 ~~~~~~~i~~w~~~~l~ 826 (826)
..+....+.+|++++|.
T Consensus 199 ~~~l~~~~~~~v~~~l~ 215 (218)
T d2fuka1 199 LIDLRGALQHGVRRWLP 215 (218)
T ss_dssp HHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 34677889999999974
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Probab=99.84 E-value=1.3e-20 Score=196.51 Aligned_cols=222 Identities=11% Similarity=0.126 Sum_probs=147.8
Q ss_pred eccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCC
Q 003363 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (826)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~ 647 (826)
.+..+|..+++|.+.|++. ..++.|+||++||.+.. ...|...+.+|+++||.|+++|+||++|. +... ....
T Consensus 9 ~~~~dg~~l~~w~~~p~~~-~~~~~~~Vvi~HG~~~~--~~~~~~~a~~L~~~G~~Vi~~D~rGh~G~--S~g~--~~~~ 81 (302)
T d1thta_ 9 LRVNNGQELHVWETPPKEN-VPFKNNTILIASGFARR--MDHFAGLAEYLSTNGFHVFRYDSLHHVGL--SSGS--IDEF 81 (302)
T ss_dssp EEETTTEEEEEEEECCCTT-SCCCSCEEEEECTTCGG--GGGGHHHHHHHHTTTCCEEEECCCBCC------------CC
T ss_pred EEcCCCCEEEEEEecCcCC-CCCCCCEEEEeCCCcch--HHHHHHHHHHHHHCCCEEEEecCCCCCCC--CCCc--ccCC
Confidence 3446789999999999863 34678999999996654 45788899999999999999999995332 2111 1122
Q ss_pred C-cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCC---CCCCchhh
Q 003363 648 G-SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT---DIPDWCYV 723 (826)
Q Consensus 648 ~-~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~---~~~~~~~~ 723 (826)
. ....+|+.++++++.+++ .++++|+||||||.+++.+|.. ..++++|+.+|+.++....... .......
T Consensus 82 ~~~~~~~dl~~vi~~l~~~~---~~~i~lvG~SmGG~ial~~A~~--~~v~~li~~~g~~~~~~~~~~~~~~~~~~~~~- 155 (302)
T d1thta_ 82 TMTTGKNSLCTVYHWLQTKG---TQNIGLIAASLSARVAYEVISD--LELSFLITAVGVVNLRDTLEKALGFDYLSLPI- 155 (302)
T ss_dssp CHHHHHHHHHHHHHHHHHTT---CCCEEEEEETHHHHHHHHHTTT--SCCSEEEEESCCSCHHHHHHHHHSSCGGGSCG-
T ss_pred CHHHHHHHHHHHHHhhhccC---CceeEEEEEchHHHHHHHHhcc--cccceeEeecccccHHHHHHHHHhhccchhhh-
Confidence 2 234788999999997763 5789999999999999887764 4588999999987764321100 0000000
Q ss_pred hhccCcCCccCCCCCC-hh-hHHHHhh------cCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEE
Q 003363 724 ESYGSKGKDSFTESPS-VE-DLTRFHS------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 795 (826)
Q Consensus 724 ~~~~~~~~~~~~~~~~-~~-~~~~~~~------~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 795 (826)
..... ......... .. ....... .++...+.++++|+|++||++|..||++.++++++.++. .+.+++
T Consensus 156 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~V~~~~~~~l~~~i~s--~~~kl~ 231 (302)
T d1thta_ 156 DELPN--DLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIRT--GHCKLY 231 (302)
T ss_dssp GGCCS--EEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSCEEEEEETTCTTSCHHHHHHHHTTCTT--CCEEEE
T ss_pred hhccc--cccccccchhhHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEeCCCCccCHHHHHHHHHhCCC--CCceEE
Confidence 00000 000000000 00 0000000 123456789999999999999999999999999988764 368999
Q ss_pred EeCCCCCCCCC
Q 003363 796 VFPNDVHGIER 806 (826)
Q Consensus 796 ~~p~~~H~~~~ 806 (826)
+++|++|.+..
T Consensus 232 ~~~g~~H~l~e 242 (302)
T d1thta_ 232 SLLGSSHDLGE 242 (302)
T ss_dssp EETTCCSCTTS
T ss_pred EecCCCccccc
Confidence 99999998763
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.83 E-value=2.4e-20 Score=196.45 Aligned_cols=241 Identities=20% Similarity=0.166 Sum_probs=148.5
Q ss_pred CCC-eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cchHHHHHHH-HCCcEEEEECCCCCCCCchhhhhcCCCCC
Q 003363 571 GAQ-KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (826)
Q Consensus 571 ~~g-~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~~~~~~~la-~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~ 647 (826)
.+| ..+.+.+|.|++ ..++.|+||++|||++..... .....+..++ +.||.|+.+|||+.++. .
T Consensus 58 ~~g~~~i~~~~~~P~~--~~~~~Pvvv~iHGGG~~~g~~~~~~~~~~~la~~~G~~V~~vdYrl~pe~-----------~ 124 (317)
T d1lzla_ 58 LDGDPEVKIRFVTPDN--TAGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAPET-----------T 124 (317)
T ss_dssp STTCCCEEEEEEEESS--CCSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTTTS-----------C
T ss_pred CCCCceEEEEEECCCC--CCCCCcEEEEecCcccccccccccchHHHhHHhhcCCccccccccccccc-----------c
Confidence 344 368999999985 456889999999998755433 4445555565 56999999999986543 2
Q ss_pred CcchHHHHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHhCCC----ceeEEEecCCccchh----hhccCCC
Q 003363 648 GSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLA----LMVGTTD 716 (826)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~p~~~~~----~~~~~~~ 716 (826)
....++|+.++++|+.++ ..+|++||+|+|+|+||++++.++.+.++ .....++..+..+.. .+....+
T Consensus 125 ~~~~~~d~~~~~~~~~~~~~~~g~D~~rI~l~G~SaGg~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 204 (317)
T d1lzla_ 125 FPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPELDDRLETVSMTNFVD 204 (317)
T ss_dssp TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCCCCTTCCSHHHHHCSS
T ss_pred ccccccccccchhHHHHHHHHhCCCHHHEEEEEeccccHHHHHHHhhhhhcccccccccccccccccccccccccccccc
Confidence 234578899999888764 34899999999999999999988865322 122333333322110 1111111
Q ss_pred CCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccC-CCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEE
Q 003363 717 IPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS-KVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 795 (826)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~-~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 795 (826)
.+.+.............................+|..... ...+|+|+++|+.|.. ..++++|+++|++.|++++++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~li~~g~~D~l--~~~~~~~~~~L~~~G~~v~~~ 282 (317)
T d1lzla_ 205 TPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRATDLTGLPPTYLSTMELDPL--RDEGIEYALRLLQAGVSVELH 282 (317)
T ss_dssp CSSCCHHHHHHHHHHHHCTTCCCTTCSCCCTTTCGGGCSCCTTCCCEEEEEETTCTT--HHHHHHHHHHHHHTTCCEEEE
T ss_pred cchhhhhhhHHHHhhhccccccCCCCchhccccCchhhhhccCCCCeEEEECCCCCC--HHHHHHHHHHHHHCCCCEEEE
Confidence 1101000000000000000000000000001112222111 2347999999999954 589999999999999999999
Q ss_pred EeCCCCCCCCCC---CCHHHHHHHHHHHHHHHcC
Q 003363 796 VFPNDVHGIERP---QSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 796 ~~p~~~H~~~~~---~~~~~~~~~i~~w~~~~l~ 826 (826)
+|||++|++... ....+...++++||+++||
T Consensus 283 ~~~g~~H~f~~~~~~~~~~~~~~~~~~~l~r~Lr 316 (317)
T d1lzla_ 283 SFPGTFHGSALVATAAVSERGAAEALTAIRRGLR 316 (317)
T ss_dssp EETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTC
T ss_pred EECcCccCCcccCCchHHHHHHHHHHHHHHHHhC
Confidence 999999987532 2233567789999999986
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Probab=99.83 E-value=2.9e-20 Score=186.93 Aligned_cols=208 Identities=14% Similarity=0.027 Sum_probs=137.8
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHH----HHHHHHHHHHc
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND----VLTAIDHVIDM 665 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D----~~~~i~~l~~~ 665 (826)
++.|+||++||.+.. ...+...+..|+++||.|+++|+||.+....................+ +.++...+...
T Consensus 22 ~~~~~vl~lHG~~~~--~~~~~~~~~~la~~G~~V~~~D~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (238)
T d1ufoa_ 22 APKALLLALHGLQGS--KEHILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEA 99 (238)
T ss_dssp SCCEEEEEECCTTCC--HHHHHHTSTTTGGGTEEEEECCCTTSTTSSCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCC--HHHHHHHHHHHHHCCCEEEEecCCCCCCCcccccccccchhhhhhhhhHHhHHHHHHHHhhhc
Confidence 457999999997654 445666777889999999999999965433221111111111111112 22222233334
Q ss_pred CCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHH
Q 003363 666 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR 745 (826)
Q Consensus 666 ~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (826)
+.++.++++++|+|+||++++.++.++|+...++... +......+. . ...........
T Consensus 100 ~~~~~~~v~~~G~S~Gg~~a~~~~~~~p~~~~~~~~~-~~~~~~~~~-----------~----------~~~~~~~~~~~ 157 (238)
T d1ufoa_ 100 ERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFI-GSGFPMKLP-----------Q----------GQVVEDPGVLA 157 (238)
T ss_dssp HHHHCCCEEEEEETHHHHHHHHHHHTTCCCSCEEEES-CCSSCCCCC-----------T----------TCCCCCHHHHH
T ss_pred cccCCceEEEEEecccHHHHHHHHhcCcchhheeeee-eeccccccc-----------c----------ccccccccccc
Confidence 4467889999999999999999999988655444433 322211100 0 00111223334
Q ss_pred HhhcCcccccCC-CCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCC--CEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 746 FHSKSPISHISK-VKTPTIFLLGAQDLRVPVSNGLQYARALREKGV--ETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 746 ~~~~sp~~~~~~-i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~--~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
....++.....+ .++|+|++||++|..||++++.+++++|++.+. .+++++++|+||.+. .+.++.+.+||.
T Consensus 158 ~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~g~gH~~~-----~~~~~~~~~f~~ 232 (238)
T d1ufoa_ 158 LYQAPPATRGEAYGGVPLLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGHTLT-----PLMARVGLAFLE 232 (238)
T ss_dssp HHHSCGGGCGGGGTTCCEEEEEETTCTTTTHHHHHHHHHHHGGGCTTCCEEEEEETTCCSSCC-----HHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcCCCeEEEEcCCCCccCHHHHHHHHHHHHhcCCCceEEEEEECCCCCccC-----HHHHHHHHHHHH
Confidence 445666655444 468999999999999999999999999999876 478889999999875 356788999999
Q ss_pred HHcC
Q 003363 823 KYCK 826 (826)
Q Consensus 823 ~~l~ 826 (826)
+||+
T Consensus 233 ~~l~ 236 (238)
T d1ufoa_ 233 HWLE 236 (238)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9873
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Probab=99.82 E-value=1.5e-19 Score=180.76 Aligned_cols=206 Identities=17% Similarity=0.145 Sum_probs=146.9
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhh-----
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ----- 641 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~----- 641 (826)
.++..+|..+++++..|. ++++|+||++|++.+. .......++.|+++||.|+++|+.+.++.+.....
T Consensus 7 ~~~~~dg~~~~a~~~~P~----~~~~P~vl~~h~~~G~--~~~~~~~a~~lA~~Gy~vl~pd~~~~~~~~~~~~~~~~~~ 80 (233)
T d1dina_ 7 SIQSYDGHTFGALVGSPA----KAPAPVIVIAQEIFGV--NAFMRETVSWLVDQGYAAVCPDLYARQAPGTALDPQDERQ 80 (233)
T ss_dssp CEECTTSCEECEEEECCS----SSSEEEEEEECCTTBS--CHHHHHHHHHHHHTTCEEEEECGGGGTSTTCBCCTTSHHH
T ss_pred EEEcCCCCEEEEEEECCC----CCCceEEEEeCCCCCC--CHHHHHHHHHHHhcCCcceeeeeccCCCcCcccChHHHHH
Confidence 455667889999999996 3689999999976543 23445567889999999999998764443321100
Q ss_pred ------cCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCC
Q 003363 642 ------SLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT 715 (826)
Q Consensus 642 ------~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~ 715 (826)
............|+.++++++.+.+ .+.+||+++|+|+||.+++.++.+ +. +.+++...|...
T Consensus 81 ~~~~~~~~~~~~~~~~~~d~~aa~~~l~~~~-~~~~~i~~~G~s~Gg~~a~~~a~~-~~-~~~~~~~~~~~~-------- 149 (233)
T d1dina_ 81 REQAYKLWQAFDMEAGVGDLEAAIRYARHQP-YSNGKVGLVGYCLGGALAFLVAAK-GY-VDRAVGYYGVGL-------- 149 (233)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHTST-TEEEEEEEEEETHHHHHHHHHHHH-TC-SSEEEEESCSCG--------
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHhCC-CCCCceEEEEecccccceeecccc-cc-cceecccccccc--------
Confidence 0000111223678889999998776 456899999999999999998876 33 445444332110
Q ss_pred CCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEE
Q 003363 716 DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 795 (826)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 795 (826)
.++...+.++++|+|++||++|+.+|.++...+++.++ .+.+++++
T Consensus 150 ---------------------------------~~~~~~~~~i~~Pvl~~~G~~D~~vp~e~~~~~~~~~~-~~~~~~~~ 195 (233)
T d1dina_ 150 ---------------------------------EKQLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFG-ANPLLQVH 195 (233)
T ss_dssp ---------------------------------GGGGGGGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHT-TCTTEEEE
T ss_pred ---------------------------------ccchhhhhccCCcceeeecccccCCCHHHHHHHHHHHh-cCCCEEEE
Confidence 01223445688999999999999999999888877775 57899999
Q ss_pred EeCCCCCCCCCCCC-------HHHHHHHHHHHHHH
Q 003363 796 VFPNDVHGIERPQS-------DFESFLNIGLWFKK 823 (826)
Q Consensus 796 ~~p~~~H~~~~~~~-------~~~~~~~i~~w~~~ 823 (826)
+|||++|+|..+.. ..+.++++++||.+
T Consensus 196 ~y~ga~HgF~~~~~~~y~~~aa~~a~~r~~~ffa~ 230 (233)
T d1dina_ 196 WYEEAGHSFARTSSSGYVASAAALANERTLDFLAP 230 (233)
T ss_dssp EETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHGG
T ss_pred EECCCCcCCCCCCCccCCHHHHHHHHHHHHHHHHc
Confidence 99999999864321 23568899999965
|
| >d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Uncharacterized protein TM1040 2492 species: Silicibacter sp. tm1040 [TaxId: 292414]
Probab=99.81 E-value=1e-19 Score=184.43 Aligned_cols=183 Identities=16% Similarity=0.177 Sum_probs=141.8
Q ss_pred EEEecCCCCCCCCCcEEEEEcCCCCCCCC-ccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHH
Q 003363 579 IFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT 657 (826)
Q Consensus 579 ~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~ 657 (826)
-+|.|+ +++.|+||++|||++.... ..+...++.|+++||.|+.+|||.+++. .....++|+.+
T Consensus 53 Diy~P~----~~~~P~vv~iHGG~w~~g~~~~~~~~a~~l~~~G~~Vv~~~YRl~p~~-----------~~p~~~~d~~~ 117 (261)
T d2pbla1 53 DLFLPE----GTPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEV-----------RISEITQQISQ 117 (261)
T ss_dssp EEECCS----SSCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTS-----------CHHHHHHHHHH
T ss_pred EEeccC----CCCCCeEEEECCCCCccCChhHhhhHHHHHhcCCceeecccccccccc-----------cCchhHHHHHH
Confidence 377786 3468999999999875433 4566678899999999999999986543 22345899999
Q ss_pred HHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCC------CceeEEEecCCccchhhhccCCCCCCchhhhhccCcCC
Q 003363 658 AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP------DKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 731 (826)
Q Consensus 658 ~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p------~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (826)
+++|+.++. ++||+|+|||+||+++++++.... ..+++++..+|+.++..+.... ....++
T Consensus 118 a~~~~~~~~---~~rI~l~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~---- 184 (261)
T d2pbla1 118 AVTAAAKEI---DGPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRTS------MNEKFK---- 184 (261)
T ss_dssp HHHHHHHHS---CSCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGGST------THHHHC----
T ss_pred HHHHHHhcc---cCceEEEEcchHHHHHHHHhcCcccccchhhchhhhhccccccccchhhhhh------hccccc----
Confidence 999999984 489999999999999988776432 3588999999988765432110 001111
Q ss_pred ccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCC
Q 003363 732 DSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803 (826)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~ 803 (826)
...+.+...||+.++.+..+|+||+||+.|..++..|+++++++|+ ++.+++|+.+|.
T Consensus 185 ---------~~~~~~~~~SP~~~~~~~~~P~li~~G~~D~~~~~~qs~~~~~~l~-----~~~~~~~~~~HF 242 (261)
T d2pbla1 185 ---------MDADAAIAESPVEMQNRYDAKVTVWVGGAERPAFLDQAIWLVEAWD-----ADHVIAFEKHHF 242 (261)
T ss_dssp ---------CCHHHHHHTCGGGCCCCCSCEEEEEEETTSCHHHHHHHHHHHHHHT-----CEEEEETTCCTT
T ss_pred ---------CCHHHHHHhCchhhcccCCCeEEEEEecCCCchHHHHHHHHHHHhC-----CCceEeCCCCch
Confidence 1234566789999999999999999999999999999999999996 477889999993
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Probab=99.81 E-value=6.1e-19 Score=172.33 Aligned_cols=192 Identities=11% Similarity=0.103 Sum_probs=141.1
Q ss_pred EEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCC-----CcchHHH
Q 003363 580 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV-----GSQDVND 654 (826)
Q Consensus 580 ~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~-----~~~~~~D 654 (826)
+|.|. .++++|+||++||++.. ...+......++ .++.|++++.......+..+........ .....++
T Consensus 5 i~~~~---~~~~~P~vi~lHG~g~~--~~~~~~~~~~l~-~~~~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (202)
T d2h1ia1 5 VFQKG---KDTSKPVLLLLHGTGGN--ELDLLPLAEIVD-SEASVLSVRGNVLENGMPRFFRRLAEGIFDEEDLIFRTKE 78 (202)
T ss_dssp EEECC---SCTTSCEEEEECCTTCC--TTTTHHHHHHHH-TTSCEEEECCSEEETTEEESSCEEETTEECHHHHHHHHHH
T ss_pred cCCCC---CCCCCCEEEEECCCCCC--HHHHHHHHHHhc-cCCceeeecccccCCCCccccccCCCCCCchHHHHHHHHH
Confidence 56665 45678999999996644 445666667666 5888999875432222111111000000 0112455
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccC
Q 003363 655 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSF 734 (826)
Q Consensus 655 ~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (826)
+...+..+.+...+|.+||+++|+|+||.+++.+++.+|+.+.++++.+|.....
T Consensus 79 ~~~~i~~~~~~~~~d~~~i~~~G~S~Gg~~a~~la~~~~~~~~~~~~~~~~~~~~------------------------- 133 (202)
T d2h1ia1 79 LNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRR------------------------- 133 (202)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCS-------------------------
T ss_pred HHHHHHHHHHhccccccceeeecccccchHHHHHHHhccccccceeeecCCCCcc-------------------------
Confidence 7777777788878999999999999999999999999999999999988754210
Q ss_pred CCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHH
Q 003363 735 TESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESF 814 (826)
Q Consensus 735 ~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~ 814 (826)
+........+|++++||++|++||++++++++++|++.|.+++++.||+ +|.+. .+..
T Consensus 134 ----------------~~~~~~~~~~~~~i~~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~g-gH~~~-----~~~~ 191 (202)
T d2h1ia1 134 ----------------GMQLANLAGKSVFIAAGTNDPICSSAESEELKVLLENANANVTMHWENR-GHQLT-----MGEV 191 (202)
T ss_dssp ----------------SCCCCCCTTCEEEEEEESSCSSSCHHHHHHHHHHHHTTTCEEEEEEESS-TTSCC-----HHHH
T ss_pred ----------------cccccccccchhhcccccCCCccCHHHHHHHHHHHHHCCCCEEEEEECC-CCcCC-----HHHH
Confidence 0111233457999999999999999999999999999999999999986 79874 3667
Q ss_pred HHHHHHHHHH
Q 003363 815 LNIGLWFKKY 824 (826)
Q Consensus 815 ~~i~~w~~~~ 824 (826)
+.+.+||.+.
T Consensus 192 ~~~~~wl~k~ 201 (202)
T d2h1ia1 192 EKAKEWYDKA 201 (202)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8999999985
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=99.80 E-value=3.4e-19 Score=190.22 Aligned_cols=241 Identities=17% Similarity=0.119 Sum_probs=158.3
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc---cchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcC
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 643 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~---~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~ 643 (826)
++...+|.++...+|.|++ ..++.|+|||+|||++..... .+...++.|+++|+.|+.+|||.+.+..
T Consensus 83 ~i~~~dg~~i~~~iy~P~~--~~~~~Pviv~~HGGG~~~gs~~~~~~~~~~~~la~~g~~VvsvdYRla~~~~------- 153 (358)
T d1jkma_ 83 TILGVDGNEITLHVFRPAG--VEGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAWTAE------- 153 (358)
T ss_dssp EEECTTSCEEEEEEEEETT--CCSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSEETT-------
T ss_pred EEeCCCCCEEEEEEEecCC--CCCCCCeEEEecCCeeeeccccccccchHHHHHHhhhheeeeeeeccccccc-------
Confidence 3445678899999999986 456889999999998764332 3456778899999999999999963321
Q ss_pred CCCCCcchHHHHHHHHHHHHHc-CCCCCCcEEEEEecchHHHHHHHHHh-----CCCceeEEEecCCccchhhhccCCCC
Q 003363 644 PGKVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQ-----APDKFVAAAARNPLCNLALMVGTTDI 717 (826)
Q Consensus 644 ~~~~~~~~~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~a~~-----~p~~~~a~v~~~p~~~~~~~~~~~~~ 717 (826)
+.......++|+.++++|+.++ ..+|++||+|+|+|.||++++.++.. ....+.+.++..|+.+.....
T Consensus 154 pe~~~p~~l~D~~~a~~wl~~~~~~~~~~ri~i~G~SAGG~La~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~~~----- 228 (358)
T d1jkma_ 154 GHHPFPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISGGYAW----- 228 (358)
T ss_dssp EECCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCCCCTTS-----
T ss_pred ccCCCchhhHHHHHHHHHHHHhccccCCccceeecccCchHHHHHHHHHHhhcCCCccccccccccceeccccCc-----
Confidence 1223345699999999999875 23678999999999999999877643 234578888888876532110
Q ss_pred CCchhhhhccCcCCccCCCCCChhhHHHHh---------hcCccccc-------CCCCCcEEEEEeCCCCCCCcHHHHHH
Q 003363 718 PDWCYVESYGSKGKDSFTESPSVEDLTRFH---------SKSPISHI-------SKVKTPTIFLLGAQDLRVPVSNGLQY 781 (826)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~sp~~~~-------~~i~~PvLii~G~~D~~vp~~~~~~~ 781 (826)
..+......... ...............+. ..+|.... -+--+|+||++|+.|..+ .+++.+
T Consensus 229 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~lPp~li~~g~~D~l~--~e~~~~ 305 (358)
T d1jkma_ 229 DHERRLTELPSL-VENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNELDPLR--DEGIAF 305 (358)
T ss_dssp CHHHHHHHCTHH-HHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCCCEEEEEETTCTTH--HHHHHH
T ss_pred cchhhcccccch-hcccccccchhhhhhHHhhcCCccCCccCccccccccchhhccCCCCEEEEECCCCCCH--HHHHHH
Confidence 000000000000 00000000000000000 11111110 012369999999999765 789999
Q ss_pred HHHHHhCCCCEEEEEeCCCCCCCCC------CCCHHHHHHHHHHHHHHH
Q 003363 782 ARALREKGVETKVIVFPNDVHGIER------PQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 782 ~~~l~~~g~~~~~~~~p~~~H~~~~------~~~~~~~~~~i~~w~~~~ 824 (826)
+++|+++|+++++++|+|.+|++.. ++...+..+.|..|+..+
T Consensus 306 ~~~L~~aGv~v~~~~~~g~~Hgf~~~~~~~~~~~~~~~~~~i~~Fl~~~ 354 (358)
T d1jkma_ 306 ARRLARAGVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADR 354 (358)
T ss_dssp HHHHHHTTCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCcEEEEEECCCccchhhhccccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998631 233445677888898765
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.80 E-value=7.7e-19 Score=190.50 Aligned_cols=246 Identities=12% Similarity=0.068 Sum_probs=172.4
Q ss_pred ccCCCee--EEEEEEecCCCCCCCCCcEEEEEcCCCCC------------------------------------------
Q 003363 569 TKGAQKP--FEAIFVSSSHKKDCSCDPLIVVLHGGPHS------------------------------------------ 604 (826)
Q Consensus 569 ~~~~g~~--l~~~~~~P~~~~~~~~~P~vv~~HGg~~~------------------------------------------ 604 (826)
+++||.+ |++-+|.|+. .++.|+|+..+.....
T Consensus 34 t~rDG~~d~l~~di~rP~~---~~k~Pvil~~sPY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (405)
T d1lnsa3 34 SEQRGENDLIKIQIIRPKS---TEKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQKLPQKLSAKAKEL 110 (405)
T ss_dssp TTCSSSCCEEEEEEEECCC---SSCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECCCCCCCCCCCCCCCCCC
T ss_pred CCCCCCEeEEEEEEEccCC---CCCceEEEEeCCcCCCCccccccccccccccccccccccccccccccccccccccccc
Confidence 4567774 9999999984 5689999877653210
Q ss_pred ---------CCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCC------
Q 003363 605 ---------VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN------ 669 (826)
Q Consensus 605 ---------~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d------ 669 (826)
..........++|+.+||+|+.+|.||.++++..+ ..++..+.+|..++|+|+.++...+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~GYavv~~D~RG~g~S~G~~-----~~~~~~e~~D~~~~IeWl~~~~~~~~~~~~~ 185 (405)
T d1lnsa3 111 PIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQ-----TSGDYQQIYSMTAVIDWLNGRARAYTSRKKT 185 (405)
T ss_dssp CEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCC-----CTTSHHHHHHHHHHHHHHTTSSCEESSTTCC
T ss_pred cccccccccccccccccchHHHHhCCCEEEEECCCCCCCCCCcc-----ccCChhhhhhHHHHHHHHHhccccccccccc
Confidence 00001123567899999999999999988776653 2355567899999999998753322
Q ss_pred --------CCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCC-------Cchhh--hhc-cCc--
Q 003363 670 --------PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIP-------DWCYV--ESY-GSK-- 729 (826)
Q Consensus 670 --------~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~-------~~~~~--~~~-~~~-- 729 (826)
..||+++|+||||++++.+|+..|..++|+|..+++.++.......... .+... ... ...
T Consensus 186 ~~~~q~WsnGkVGm~G~SY~G~~q~~aA~~~pp~LkAivp~~~~~d~y~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (405)
T d1lnsa3 186 HEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNL 265 (405)
T ss_dssp CEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCCHHHHHHHHCGGGG
T ss_pred ccccccccCCeeEEEecCHHHHHHHHHHhcCCccceEEEecCccccHHHHhhcCCccccccchhhhhhhhhhcccccccc
Confidence 2489999999999999999999999999999999999875332111000 00000 000 000
Q ss_pred ------------------C-CccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCC
Q 003363 730 ------------------G-KDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV 790 (826)
Q Consensus 730 ------------------~-~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~ 790 (826)
. ....... ....+.+.+.++...+++|++|+|+++|..|..+++.++.+++++|+ .+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~w~~~s~~~~~~~I~vP~L~i~Gw~D~~v~~~~~~~~y~al~-~~~ 342 (405)
T d1lnsa3 266 DGADFLKGNAEYEKRLAEMTAALDRKS--GDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALP-EGH 342 (405)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHCTTT--CCCCHHHHTTBGGGGGGGCCSEEEEEEETTCCSSCTHHHHHHHHHSC-TTC
T ss_pred ccchhhhchhhhhhccchhhhhhhhcc--ccchhhhhhcChhhhhhcCCCCEEEEEeccCCCCCHHHHHHHHHHHH-hCC
Confidence 0 0000000 11124466778889999999999999999999999999999999996 467
Q ss_pred CEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 791 ETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 791 ~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
+.++++.|+ +|.........++.+.+++||++|||
T Consensus 343 ~~~Lilgpw-~H~~~~~~~~~d~~~~~~~wFD~~Lk 377 (405)
T d1lnsa3 343 AKHAFLHRG-AHIYMNSWQSIDFSETINAYFVAKLL 377 (405)
T ss_dssp CEEEEEESC-SSCCCTTBSSCCHHHHHHHHHHHHHT
T ss_pred CcEEEEeCC-CCCCCcccccchHHHHHHHHHHHHhC
Confidence 788888875 78765443344677889999999996
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=1.2e-17 Score=170.66 Aligned_cols=242 Identities=17% Similarity=0.151 Sum_probs=179.3
Q ss_pred CeEEEEecCCCCC--CeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCC
Q 003363 166 SKLLVVRNPENES--PIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK 242 (826)
Q Consensus 166 ~~la~~~~~~~~~--~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~ 242 (826)
.+|||+.+.+++. .++|+++ ++++.++++...... ..++|||||++|||++...
T Consensus 4 ~~iay~~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~----------~sP~wSPDGk~IAf~~~~~------------- 60 (269)
T d2hqsa1 4 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPL----------MSPAWSPDGSKLAYVTFES------------- 60 (269)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCE----------EEEEECTTSSEEEEEECTT-------------
T ss_pred CeEEEEEEeCCCCceEEEEEEcCCCCCcEEEecCCCce----------eeeEECCCCCEEEEEEeec-------------
Confidence 6899998775322 2577777 677888888766554 6899999999999997654
Q ss_pred CCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcc
Q 003363 243 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 322 (826)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~ 322 (826)
....+++.+..++..+.+ +........+.|||||+. |++......
T Consensus 61 ----------------------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~----i~~~~~~~~- 105 (269)
T d2hqsa1 61 ----------------------------GRSALVIQTLANGAVRQV--ASFPRHNGAPAFSPDGSK----LAFALSKTG- 105 (269)
T ss_dssp ----------------------------SSCEEEEEETTTCCEEEE--ECCSSCEEEEEECTTSSE----EEEEECTTS-
T ss_pred ----------------------------cCcceeeeecccCceeEE--eeeecccccceecCCCCe----eeEeeecCC-
Confidence 346799999999998888 455556678899999999 999874322
Q ss_pred eeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcc
Q 003363 323 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 402 (826)
Q Consensus 323 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~ 402 (826)
...+..... .................|.++++++.+++.+.+. +
T Consensus 106 -----------~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g 149 (269)
T d2hqsa1 106 -----------SLNLYVMDL-----------------ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQA--------G 149 (269)
T ss_dssp -----------SCEEEEEET-----------------TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTT--------S
T ss_pred -----------ccceeeccc-----------------ccccceeeeeccccccccccccccccceeccccc--------C
Confidence 124444443 4445556666666778899999999999998774 3
Q ss_pred cceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEE
Q 003363 403 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 482 (826)
Q Consensus 403 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~ 482 (826)
..+|++.++.++....++.... ....+.|+|||+.+++.....+...++.++..++..+.
T Consensus 150 ~~~i~~~~~~~~~~~~~~~~~~--------------------~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~ 209 (269)
T d2hqsa1 150 RPQVYKVNINGGAPQRITWEGS--------------------QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV 209 (269)
T ss_dssp SCEEEEEETTSSCCEECCCSSS--------------------EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE
T ss_pred CceEeeeecccccceeeecccc--------------------cccccccccccceeEEEeecCCceeeeEeecccccceE
Confidence 4679999988866544332211 12256799999999999888899999999998887755
Q ss_pred ecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 483 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 483 lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
+. .......+.|||||+.|+|.... ....+|++.++.++
T Consensus 210 ~~-~~~~~~~p~~SPDG~~i~f~s~~-~~~~~l~~~~~dg~ 248 (269)
T d2hqsa1 210 LS-STFLDETPSLAPNGTMVIYSSSQ-GMGSVLNLVSTDGR 248 (269)
T ss_dssp CC-CSSSCEEEEECTTSSEEEEEEEE-TTEEEEEEEETTSC
T ss_pred ee-cCccccceEECCCCCEEEEEEcC-CCCcEEEEEECCCC
Confidence 54 44444567899999999998754 44567898887654
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=99.79 E-value=1.8e-19 Score=188.86 Aligned_cols=233 Identities=17% Similarity=0.151 Sum_probs=154.3
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-ccchHHHHHHHHCC-cEEEEECCCCCCCCchhhhhcCC
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVG-YSLLIVNYRGSLGFGEEALQSLP 644 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~~~~~~~la~~G-~~Vl~~d~rG~~g~G~~~~~~~~ 644 (826)
....++|.++.+.+|.|++ ..++.|+||++|||++.... ..+...+..++.+| +.|+.+|||...+.
T Consensus 49 ~~~~~~g~~i~~~~y~P~~--~~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~a~~~~~~v~~v~Yrl~p~~--------- 117 (308)
T d1u4na_ 49 FDMDLPGRTLKVRMYRPEG--VEPPYPALVYYHGGGWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPEH--------- 117 (308)
T ss_dssp EEEEETTEEEEEEEEECTT--CCSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTS---------
T ss_pred EEEecCCceEEEEEEeccc--cCCCCCEEEEEecCeeeeeccccccchhhhhhhccccccccccccccccc---------
Confidence 3344678889999999986 34679999999999865433 34555666666555 56888999986542
Q ss_pred CCCCcchHHHHHHHHHHHHHcC---CCCCCcEEEEEecchHHHHHHHHHhCCC----ceeEEEecCCccchhhhccCCCC
Q 003363 645 GKVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDI 717 (826)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~p~~~~~~~~~~~~~ 717 (826)
......+|+.++++|+.++. .+|++||+|+|+|+||++++.++....+ .+.+..+.++..+......
T Consensus 118 --~~p~~~~D~~~~~~~l~~~~~~~~~d~~ri~~~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 191 (308)
T d1u4na_ 118 --KFPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTGYDPAHP---- 191 (308)
T ss_dssp --CTTHHHHHHHHHHHHHHTTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHHTCCCCCCEEEESCCCCCCTTSC----
T ss_pred --ccccccchhhhhhhHHHHhHHhcCCCcceEEEeeccccchhHHHHHHhhhhccCCCcccccccccccccccccc----
Confidence 33446899999999998753 5899999999999999999988765432 3455556666544221100
Q ss_pred CCchhhhhccCcCCccCCCCCChhhH------------HHHhhcCcccccCCC-CCcEEEEEeCCCCCCCcHHHHHHHHH
Q 003363 718 PDWCYVESYGSKGKDSFTESPSVEDL------------TRFHSKSPISHISKV-KTPTIFLLGAQDLRVPVSNGLQYARA 784 (826)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~sp~~~~~~i-~~PvLii~G~~D~~vp~~~~~~~~~~ 784 (826)
.. ....... .. ........ ......++....... .+|+||++|+.|..+ .+++.++++
T Consensus 192 -~~-~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~d~~~~Pp~li~~g~~D~l~--~~~~~~~~~ 262 (308)
T d1u4na_ 192 -PA-SIEENAE----GY-LLTGGMSLWFLDQYLNSLEELTHPWFSPVLYPDLSGLPPAYIATAQYDPLR--DVGKLYAEA 262 (308)
T ss_dssp -CH-HHHHTSS----SS-SSCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCCTTCCCEEEEEEEECTTH--HHHHHHHHH
T ss_pred -cc-hhhhccc----cc-cccchhhhhhhhcccCccccccchhhhhhhchhhcCCCCeeEEecCcCCch--HHHHHHHHH
Confidence 00 0000000 00 00000000 000112222222222 268999999999765 789999999
Q ss_pred HHhCCCCEEEEEeCCCCCCCCCC----CCHHHHHHHHHHHHHHHc
Q 003363 785 LREKGVETKVIVFPNDVHGIERP----QSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 785 l~~~g~~~~~~~~p~~~H~~~~~----~~~~~~~~~i~~w~~~~l 825 (826)
|+++|+++++++|||++|++... ....+.++++.+||++.|
T Consensus 263 L~~~G~~v~~~~~~g~~Hgf~~~~~~~~~a~~~~~~~~~fl~~~L 307 (308)
T d1u4na_ 263 LNKAGVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDAL 307 (308)
T ss_dssp HHHTTCCEEEEEEEEEETTGGGGTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCEEEEEECCCCEeCcccCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999986431 223478889999999876
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.79 E-value=1.9e-18 Score=177.75 Aligned_cols=263 Identities=9% Similarity=0.019 Sum_probs=172.8
Q ss_pred CCCC--cceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCC--CC
Q 003363 104 GNGN--GTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENE--SP 179 (826)
Q Consensus 104 ~s~d--g~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~--~~ 179 (826)
+||| |++|+|+.. ..||++++ .+++.++||..+ ..+..|+|||||++|||++..++. ..
T Consensus 6 ~sPdi~G~~v~f~~~----------~dl~~~d~--~~g~~~~Lt~~~-----~~~~~p~~SPDG~~iaf~~~~~~~~~~~ 68 (281)
T d1k32a2 6 LNPDIHGDRIIFVCC----------DDLWEHDL--KSGSTRKIVSNL-----GVINNARFFPDGRKIAIRVMRGSSLNTA 68 (281)
T ss_dssp EEEEEETTEEEEEET----------TEEEEEET--TTCCEEEEECSS-----SEEEEEEECTTSSEEEEEEEESTTCCEE
T ss_pred cCCCCCCCEEEEEeC----------CcEEEEEC--CCCCEEEEecCC-----CcccCEEECCCCCEEEEEEeeCCCCCce
Confidence 4789 999999742 26898876 456788998876 568899999999999999865432 23
Q ss_pred eEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcce
Q 003363 180 IQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 258 (826)
Q Consensus 180 ~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (826)
+++.+. .+++.++++.......+.. .....+.|||||+.|+|........
T Consensus 69 ~i~~~~~~~g~~~~lt~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~~~~-------------------------- 119 (281)
T d1k32a2 69 DLYFYNGENGEIKRITYFSGKSTGRR---MFTDVAGFDPDGNLIISTDAMQPFS-------------------------- 119 (281)
T ss_dssp EEEEEETTTTEEEECCCCCEEEETTE---ECSEEEEECTTCCEEEEECTTSSST--------------------------
T ss_pred EEEEEEecCCceEEeeecCCCccCcc---ccccccccCCCCCEEEEEEccCCCc--------------------------
Confidence 577777 6677777764432210000 0114778999999999975432110
Q ss_pred eecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceE
Q 003363 259 WEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (826)
Q Consensus 259 ~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~ 338 (826)
....++.++.++++++... .. .....|.+|++. +++............ .. ......
T Consensus 120 ------------~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~-~~~~~~ 175 (281)
T d1k32a2 120 ------------SMTCLYRVENDGINFVPLN--LG---PATHILFADGRR----VIGRNTFELPHWKGY--RG-GTRGKI 175 (281)
T ss_dssp ------------TCCEEEEEEGGGTEEEECC--SC---SCSEEEEETTEE----EEEESCSCCTTSTTC--CS-TTCCEE
T ss_pred ------------cceeeeeecCCCceeEEec--CC---ccceeeecCCCe----EEEeeccccceeeee--cc-CCccee
Confidence 2356788898888887662 22 234678899988 777664433211111 00 111222
Q ss_pred EEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCC
Q 003363 339 AVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 418 (826)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 418 (826)
.... .......++........|.+++| .+++..... +..+||++|+++++.++
T Consensus 176 ~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--------~~~~l~~~d~~g~~~~~ 228 (281)
T d1k32a2 176 WIEV-----------------NSGAFKKIVDMSTHVSSPVIVGH--RIYFITDID--------GFGQIYSTDLDGKDLRK 228 (281)
T ss_dssp EEEE-----------------ETTEEEEEECCSSCCEEEEEETT--EEEEEECTT--------SSCEEEEEETTSCSCEE
T ss_pred eeec-----------------cccceeeccCCccccceeeeecc--ccceecccc--------cccceEEEeCCCCceEE
Confidence 2232 33445556666666778888876 566666553 35789999999988776
Q ss_pred cccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC
Q 003363 419 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 488 (826)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~ 488 (826)
++.... .....|||||+.|+|... ..||.+|+++|+.++|+....
T Consensus 229 lt~~~~---------------------~~~~~~SpDG~~I~f~~~----~~l~~~d~~~g~~~~i~~~~~ 273 (281)
T d1k32a2 229 HTSFTD---------------------YYPRHLNTDGRRILFSKG----GSIYIFNPDTEKIEKIEIGDL 273 (281)
T ss_dssp CCCCCS---------------------SCEEEEEESSSCEEEEET----TEEEEECTTTCCEEECCCCCC
T ss_pred eecCCC---------------------cccccCcCCCCEEEEEeC----CEEEEEECCCCCEEEeccCCc
Confidence 653321 112369999999998642 369999999999999976543
|
| >d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Aclacinomycin methylesterase RdmC domain: Aclacinomycin methylesterase RdmC species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.79 E-value=1.3e-18 Score=180.68 Aligned_cols=232 Identities=15% Similarity=0.129 Sum_probs=142.9
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch-HHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcc
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~-~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~ 650 (826)
.+..+++..+-+ ...|.||++||.+.+ ...|. ...+.|.++||.|+++|+||.|.+.... ......
T Consensus 8 g~~~i~y~~~G~------~~~p~vvl~HG~~~~--~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~-----~~~~~~ 74 (297)
T d1q0ra_ 8 GDVELWSDDFGD------PADPALLLVMGGNLS--ALGWPDEFARRLADGGLHVIRYDHRDTGRSTTRD-----FAAHPY 74 (297)
T ss_dssp TTEEEEEEEESC------TTSCEEEEECCTTCC--GGGSCHHHHHHHHTTTCEEEEECCTTSTTSCCCC-----TTTSCC
T ss_pred CCEEEEEEEecC------CCCCEEEEECCCCcC--hhHHHHHHHHHHHhCCCEEEEEeCCCCccccccc-----cccccc
Confidence 456676655532 345889999998655 44553 4577889999999999999954432111 111123
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh--------hccC---CCCC-
Q 003363 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--------MVGT---TDIP- 718 (826)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~--------~~~~---~~~~- 718 (826)
.++|+.+.+..+++. ++.+++.++|||+||.+++.+|.++|++++++|+.++...... .... ...+
T Consensus 75 ~~~~~~~d~~~ll~~--l~~~~~~lvGhS~Gg~~a~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (297)
T d1q0ra_ 75 GFGELAADAVAVLDG--WGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDANIERVMRGEPTLDGLPG 152 (297)
T ss_dssp CHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHHHHHHHHHTCCCSSCSCC
T ss_pred ccchhhhhhcccccc--ccccceeeccccccchhhhhhhcccccceeeeEEEccccccccchhhhHHHhhhhhhhhhhhh
Confidence 466766666666665 4567899999999999999999999999999998876532210 0000 0000
Q ss_pred -Cchhhhhc---cCcC---------------CccCCCCCC-hhhHHHHh-----------------------hcCccccc
Q 003363 719 -DWCYVESY---GSKG---------------KDSFTESPS-VEDLTRFH-----------------------SKSPISHI 755 (826)
Q Consensus 719 -~~~~~~~~---~~~~---------------~~~~~~~~~-~~~~~~~~-----------------------~~sp~~~~ 755 (826)
........ .... .......+. ......+. ..+....+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (297)
T d1q0ra_ 153 PQQPFLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEPYAHYSLTLPPPSRAAEL 232 (297)
T ss_dssp CCHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCCCGGGGCCCCCGGGGGGG
T ss_pred hhHHHHHHHHHhccccchhhHHHHHHHHHHhhhccccccchHHHHHHHHHHhhhhccccchhhhhhhhhhhccccchhhh
Confidence 00000000 0000 000000000 01000000 01122346
Q ss_pred CCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 756 SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 756 ~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+++++|+|+++|++|..+|+..++.+.+.+++ .+++++|++||.+..+. ..++.+.|++|++.
T Consensus 233 ~~i~~Pvlvi~G~~D~~~~~~~~~~~~~~~p~----~~~~~i~~~gH~~~~e~-p~~~~~~i~~~l~~ 295 (297)
T d1q0ra_ 233 REVTVPTLVIQAEHDPIAPAPHGKHLAGLIPT----ARLAEIPGMGHALPSSV-HGPLAEVILAHTRS 295 (297)
T ss_dssp GGCCSCEEEEEETTCSSSCTTHHHHHHHTSTT----EEEEEETTCCSSCCGGG-HHHHHHHHHHHHHH
T ss_pred hccCCceEEEEeCCCCCCCHHHHHHHHHhCCC----CEEEEECCCCCcchhhC-HHHHHHHHHHHHHh
Confidence 78899999999999999999998888777653 79999999999876443 33666677777654
|
| >d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Ccg1/TafII250-interacting factor B (Cib) domain: Ccg1/TafII250-interacting factor B (Cib) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=9.2e-20 Score=178.74 Aligned_cols=191 Identities=16% Similarity=0.218 Sum_probs=132.4
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH--HHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCc
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK--SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~--~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~ 649 (826)
+|..+++....|. .+...|.||++||.+.+ ...|.. .+..|+++||.|+++|+|| +|.+........+..
T Consensus 14 ~G~~i~y~~~~~~---~~~~~~~vvllHG~~~~--~~~w~~~~~~~~la~~gy~via~D~~G---~G~S~~~~~~~~~~~ 85 (208)
T d1imja_ 14 QGQALFFREALPG---SGQARFSVLLLHGIRFS--SETWQNLGTLHRLAQAGYRAVAIDLPG---LGHSKEAAAPAPIGE 85 (208)
T ss_dssp TTEEECEEEEECS---SSCCSCEEEECCCTTCC--HHHHHHHTHHHHHHHTTCEEEEECCTT---SGGGTTSCCSSCTTS
T ss_pred CCEEEEEEEecCC---CCCCCCeEEEECCCCCC--hhHHhhhHHHHHHHHcCCeEEEeeccc---ccCCCCCCcccccch
Confidence 5778877777775 45567889999997755 334543 4678999999999999999 565543222222222
Q ss_pred ch-HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccC
Q 003363 650 QD-VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 728 (826)
Q Consensus 650 ~~-~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 728 (826)
.. .+++.+.++. ++.+++.|+||||||.+++.++.++|++++++|+.+|...- .+
T Consensus 86 ~~~~~~l~~~~~~------l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lV~~~p~~~~----------------~~-- 141 (208)
T d1imja_ 86 LAPGSFLAAVVDA------LELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTD----------------KI-- 141 (208)
T ss_dssp CCCTHHHHHHHHH------HTCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGG----------------GS--
T ss_pred hhhhhhhhhcccc------cccccccccccCcHHHHHHHHHHHhhhhcceeeecCccccc----------------cc--
Confidence 22 2333443333 24578999999999999999999999999999999875310 00
Q ss_pred cCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCC
Q 003363 729 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 808 (826)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~ 808 (826)
....+.++++|+|+++|++|..+|... +. ++ .-...++.++++++|.... +
T Consensus 142 ----------------------~~~~~~~i~~P~Lii~G~~D~~~~~~~--~~---~~-~~~~~~~~~i~~~gH~~~~-~ 192 (208)
T d1imja_ 142 ----------------------NAANYASVKTPALIVYGDQDPMGQTSF--EH---LK-QLPNHRVLIMKGAGHPCYL-D 192 (208)
T ss_dssp ----------------------CHHHHHTCCSCEEEEEETTCHHHHHHH--HH---HT-TSSSEEEEEETTCCTTHHH-H
T ss_pred ----------------------ccccccccccccccccCCcCcCCcHHH--HH---HH-hCCCCeEEEECCCCCchhh-h
Confidence 001235678999999999998876432 22 22 2345899999999997543 3
Q ss_pred CHHHHHHHHHHHHHH
Q 003363 809 SDFESFLNIGLWFKK 823 (826)
Q Consensus 809 ~~~~~~~~i~~w~~~ 823 (826)
...++.+.+.+||++
T Consensus 193 ~p~~~~~~l~~Fl~~ 207 (208)
T d1imja_ 193 KPEEWHTGLLDFLQG 207 (208)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhc
Confidence 344788889999874
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=3.5e-19 Score=181.89 Aligned_cols=198 Identities=12% Similarity=0.147 Sum_probs=131.9
Q ss_pred CCCCCcEEEEEcCCCCCCC---CccchHHH----HHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHH
Q 003363 588 DCSCDPLIVVLHGGPHSVS---LSSYSKSL----AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAID 660 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~---~~~~~~~~----~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~ 660 (826)
..+++|+||++|||++... ...+.... ..++++||.|+.+|||++++. .....++|+.++++
T Consensus 27 ~~~~~~~vv~iHGGg~~~~~~~~~~~~~~~~~l~~~~~~~g~~v~~~dYrl~p~~-----------~~~~~~~d~~~~~~ 95 (263)
T d1vkha_ 27 SQNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEI-----------TNPRNLYDAVSNIT 95 (263)
T ss_dssp CTTCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTS-----------CTTHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCccCCCCCcchHHHHHHHHHHHHHhCCeEEEEeccccCcch-----------hhhHHHHhhhhhhh
Confidence 4567899999999876432 22333333 344688999999999986543 12345899999999
Q ss_pred HHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC-----------------ceeEEEecCCccchhhhccCCCCCCchhh
Q 003363 661 HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----------------KFVAAAARNPLCNLALMVGTTDIPDWCYV 723 (826)
Q Consensus 661 ~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~-----------------~~~a~v~~~p~~~~~~~~~~~~~~~~~~~ 723 (826)
|+.++ .+.++|+|+|||+||.+++.++...++ .+.+.+...+..++..+........+...
T Consensus 96 ~l~~~--~~~~~i~l~G~S~Gg~lal~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (263)
T d1vkha_ 96 RLVKE--KGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTR 173 (263)
T ss_dssp HHHHH--HTCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGGHHHHH
T ss_pred ccccc--ccccceeeeccCcHHHHHHHHHHhccCccccccccccccccccccccccccccccccchhhhhhccccchhhh
Confidence 99997 467899999999999999998875543 34555566666554433211111111111
Q ss_pred hhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCC
Q 003363 724 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803 (826)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~ 803 (826)
..+.. ....+.... ... .......+.++.+|+|++||++|++||++++.+++++|++.|++++++++++++|.
T Consensus 174 ~~~~~-~~~~~~~~~--~~~----~~~~~~~~~~~~~P~lii~G~~D~~vp~~~s~~l~~~L~~~g~~~~~~~~~~~~H~ 246 (263)
T d1vkha_ 174 LAFPD-GIQMYEEEP--SRV----MPYVKKALSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHN 246 (263)
T ss_dssp HHCTT-CGGGCCCCH--HHH----HHHHHHHHHHHTCEEEEEEETTCSSCCTHHHHHHHHHHHHTTCCEEEEEECCCSGG
T ss_pred ccccc-ccccccccc--ccc----CccccccccccCCCeeeeecCCCcccCHHHHHHHHHHHHHCCCCEEEEEECCCCch
Confidence 11111 000000000 000 00012234456799999999999999999999999999999999999999999997
Q ss_pred CC
Q 003363 804 IE 805 (826)
Q Consensus 804 ~~ 805 (826)
..
T Consensus 247 ~~ 248 (263)
T d1vkha_ 247 DV 248 (263)
T ss_dssp GG
T ss_pred hh
Confidence 54
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.79 E-value=1.5e-19 Score=189.34 Aligned_cols=221 Identities=19% Similarity=0.203 Sum_probs=151.8
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cchHHHHHH-HHCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~~~~~~~l-a~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
+.+.++...+|.|+ ++.|+||++|||++..... .+...+..+ ++.|+.|+.+|||+++++ ..
T Consensus 63 ~~~g~i~~~iy~P~-----~~~P~il~iHGGg~~~g~~~~~~~~~~~l~~~~g~~Vv~v~Yrlap~~-----------~~ 126 (311)
T d1jjia_ 63 GRNGDIRVRVYQQK-----PDSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEH-----------KF 126 (311)
T ss_dssp ETTEEEEEEEEESS-----SSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCTTTS-----------CT
T ss_pred CCCCcEEEEEEcCC-----CCceEEEEEcCCCCccCChhhhhhhhhhhhhcCCcEEEEecccccccc-----------cc
Confidence 33447888999986 2459999999998765433 444555555 556999999999997653 23
Q ss_pred cchHHHHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHhC----CCceeEEEecCCccchhhhccCCCCCCch
Q 003363 649 SQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA----PDKFVAAAARNPLCNLALMVGTTDIPDWC 721 (826)
Q Consensus 649 ~~~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~~----p~~~~a~v~~~p~~~~~~~~~~~~~~~~~ 721 (826)
...++|+.++++|+.++ ..+|++||+|+|+|+||++++.++... .....+.++.+|..+......
T Consensus 127 p~~~~d~~~a~~~~~~~~~~~~~d~~ri~v~G~SaGG~la~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~-------- 198 (311)
T d1jjia_ 127 PAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVNFVAPTP-------- 198 (311)
T ss_dssp THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCCSSSCCH--------
T ss_pred chhhhhhhhhhhHHHHhHHHhCcChhHEEEEeeecCCcceeechhhhhhccccccceeeeecceeeeccCcc--------
Confidence 34588999999999885 358899999999999999988776432 346788889999876432100
Q ss_pred hhhhccCcCCccCCCCCChhhH-------------HHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhC
Q 003363 722 YVESYGSKGKDSFTESPSVEDL-------------TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 788 (826)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~ 788 (826)
....++. ... ....... ......+|+....+..+|+||++|+.|..+ .++..++++|+++
T Consensus 199 ~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~g~~D~l~--d~~~~~~~~L~~~ 271 (311)
T d1jjia_ 199 SLLEFGE----GLW-ILDQKIMSWFSEQYFSREEDKFNPLASVIFADLENLPPALIITAEYDPLR--DEGEVFGQMLRRA 271 (311)
T ss_dssp HHHHTSS----SCS-SCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCTTCCCEEEEEEEECTTH--HHHHHHHHHHHHT
T ss_pred ccccccc----ccc-cccHHHhhhhhhhcccccccccccccchhhcccccCCCEEEEEcCCCCCh--HHHHHHHHHHHHC
Confidence 0000000 000 0000000 001123565554455689999999999765 6899999999999
Q ss_pred CCCEEEEEeCCCCCCCCC--C--CCHHHHHHHHHHHHH
Q 003363 789 GVETKVIVFPNDVHGIER--P--QSDFESFLNIGLWFK 822 (826)
Q Consensus 789 g~~~~~~~~p~~~H~~~~--~--~~~~~~~~~i~~w~~ 822 (826)
|+++++++|+|++|+|.. + ....+++++|.+|+.
T Consensus 272 Gv~v~~~~~~g~~H~F~~~~~~~~~a~~a~~~i~~fl~ 309 (311)
T d1jjia_ 272 GVEASIVRYRGVLHGFINYYPVLKAARDAINQIAALLV 309 (311)
T ss_dssp TCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCccccCCCcCHHHHHHHHHHHHHhC
Confidence 999999999999998742 1 223467777888873
|
| >d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Tricorn interacting factor F1 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.78 E-value=3.6e-19 Score=183.46 Aligned_cols=236 Identities=16% Similarity=0.119 Sum_probs=141.8
Q ss_pred eccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCC
Q 003363 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (826)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~ 647 (826)
+.+-+|..++...+..+ +..|+||++||+++. ...|...+..++++||.|+++|+||.| .+.. ...
T Consensus 6 ~~~~~g~~i~y~~~g~~-----~~~~~iv~lHG~~g~--~~~~~~~~~~~~~~~~~vi~~D~~G~G---~S~~----~~~ 71 (290)
T d1mtza_ 6 YAKVNGIYIYYKLCKAP-----EEKAKLMTMHGGPGM--SHDYLLSLRDMTKEGITVLFYDQFGCG---RSEE----PDQ 71 (290)
T ss_dssp EEEETTEEEEEEEECCS-----SCSEEEEEECCTTTC--CSGGGGGGGGGGGGTEEEEEECCTTST---TSCC----CCG
T ss_pred eEEECCEEEEEEEcCCC-----CCCCeEEEECCCCCc--hHHHHHHHHHHHHCCCEEEEEeCCCCc---cccc----ccc
Confidence 34457778876555432 345889999998755 335555566677889999999999954 4321 111
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhc-------cC------
Q 003363 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV-------GT------ 714 (826)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~-------~~------ 714 (826)
....+++..+.+..++++- ...+++.|+|||+||.+++.++.++|++++++++.++........ ..
T Consensus 72 ~~~~~~~~~~~l~~ll~~l-~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (290)
T d1mtza_ 72 SKFTIDYGVEEAEALRSKL-FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEMNRLIDELPAKYR 150 (290)
T ss_dssp GGCSHHHHHHHHHHHHHHH-HTTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBHHHHHHHHHHHHHTSCHHHH
T ss_pred ccccccchhhhhhhhhccc-ccccccceecccccchhhhhhhhcChhhheeeeecccccCcccchhhhhhhhhhhhHHHH
Confidence 1223444444444444331 123689999999999999999999999999999988765321100 00
Q ss_pred ---------CCCCCchhhh---hccCcCCccCCCCCChhhHHHH------------------------hhcCcccccCCC
Q 003363 715 ---------TDIPDWCYVE---SYGSKGKDSFTESPSVEDLTRF------------------------HSKSPISHISKV 758 (826)
Q Consensus 715 ---------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~------------------------~~~sp~~~~~~i 758 (826)
.......+.. ............. ..+..... ...+....+.++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 229 (290)
T d1mtza_ 151 DAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDW-PPEVLKSLEYAERRNVYRIMNGPNEFTITGTIKDWDITDKISAI 229 (290)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHTSCSSCC-CHHHHHHHHHHHHSSHHHHHTCSBTTBCCSTTTTCBCTTTGGGC
T ss_pred HHHHHhhhhccccchhHHHHHHHHhhhhhcccccc-hHHHHHHHHHHhhhhhhhhhcchhHHhHhhhhhcccHHHHhhcc
Confidence 0000000000 0000000000000 00100000 011122345678
Q ss_pred CCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 759 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 759 ~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
++|+|+++|++|..+| ..+..+.+.+++ +++++++++||.+... ...++.+.|.+||.+||
T Consensus 230 ~~P~l~i~G~~D~~~~-~~~~~~~~~~~~----~~~~~~~~~gH~~~~e-~p~~~~~~i~~FL~~h~ 290 (290)
T d1mtza_ 230 KIPTLITVGEYDEVTP-NVARVIHEKIAG----SELHVFRDCSHLTMWE-DREGYNKLLSDFILKHL 290 (290)
T ss_dssp CSCEEEEEETTCSSCH-HHHHHHHHHSTT----CEEEEETTCCSCHHHH-SHHHHHHHHHHHHHTCC
T ss_pred cceEEEEEeCCCCCCH-HHHHHHHHHCCC----CEEEEECCCCCchHHh-CHHHHHHHHHHHHHHhC
Confidence 8999999999998764 566666666653 6899999999986544 34578899999999986
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Probab=99.78 E-value=8.1e-19 Score=187.09 Aligned_cols=242 Identities=15% Similarity=0.125 Sum_probs=165.5
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--CccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~--~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
.||..|.+.+|.|+ ..++.|+||+.||.+.... ...+....+.|+++||+|+++|.||.++++..+ ...
T Consensus 13 rDGv~L~~~vy~P~---~~~~~P~il~~~pyg~~~~~~~~~~~~~~~~~a~~GY~vv~~d~RG~g~S~G~~------~~~ 83 (347)
T d1ju3a2 13 RDGVRLAVDLYRPD---ADGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASEGEF------VPH 83 (347)
T ss_dssp TTSCEEEEEEEEEC---CSSCEEEEEEEESSCTTCCHHHHTTSCCTHHHHHTTCEEEEEECTTSTTCCSCC------CTT
T ss_pred CCCCEEEEEEEEcC---CCCCEEEEEEEcCCCCccccCcCcccHHHHHHHHCCCEEEEEeeCCccccCCcc------ccc
Confidence 36789999999997 4678999999998432211 112233567899999999999999988776543 233
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC--CCCC------Cc
Q 003363 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT--TDIP------DW 720 (826)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~--~~~~------~~ 720 (826)
..+..|..++++|+.+++..| .||+++|+|+||++++.+|+..|..+++++..++..|+...... .... .|
T Consensus 84 ~~~~~d~~d~i~w~~~q~~~~-grVg~~G~SygG~~~~~~A~~~~~~l~aiv~~~~~~d~~~~~~~~~gg~~~~~~~~~~ 162 (347)
T d1ju3a2 84 VDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGPGGALSVEALLGW 162 (347)
T ss_dssp TTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCSCTTCCCCHHHHHHH
T ss_pred cchhhhHHHHHHHHHhhccCC-cceEeeeccccccchhhhhhcccccceeeeeccccchhhhhhhhhcCCccchhhHHHH
Confidence 345678899999999999877 79999999999999999999989999999999988775311000 0000 00
Q ss_pred hhhhh---cc-------------------------CcCCccCCCCC---------------ChhhHHHHhhcCcccccCC
Q 003363 721 CYVES---YG-------------------------SKGKDSFTESP---------------SVEDLTRFHSKSPISHISK 757 (826)
Q Consensus 721 ~~~~~---~~-------------------------~~~~~~~~~~~---------------~~~~~~~~~~~sp~~~~~~ 757 (826)
..... .. ..........+ .....+.+.+.++...+.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 242 (347)
T d1ju3a2 163 SALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHPDNDESWQSISLFERLGG 242 (347)
T ss_dssp HHHHHHHHHTTSSSCCTTHHHHHHHHHHHHHCHHHHHTCSSTTCCTTHHHHCTHHHHTTTTCCSCCHHHHTTCCHHHHTT
T ss_pred HHHhhccccccccccCcchhhHHhhhhhhcccchhhhccCccccccccccchhhHHHHhhhcccchhhhhcCCHHHHhhc
Confidence 00000 00 00000000000 0011134556678888999
Q ss_pred CCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCC------------CCCCHHHHHHHHHHHHHHHc
Q 003363 758 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE------------RPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 758 i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~------------~~~~~~~~~~~i~~w~~~~l 825 (826)
+++|+|+++|..|..+ ..+.+++++++. +.+.++++-|. +|... ......+.....++||++||
T Consensus 243 i~vP~L~i~G~~D~~~--~~~~~~~~~~~~-~~~~~liigpw-~H~~~~~~~~~~~~g~~~~~~~~~~~~~~l~wfD~~L 318 (347)
T d1ju3a2 243 LATPALITAGWYDGFV--GESLRTFVAVKD-NADARLVVGPW-SHSNLTGRNADRKFGIAATYPIQEATTMHKAFFDRHL 318 (347)
T ss_dssp CCCCEEEEEEEECTTH--HHHHHHHHHHTT-TSCEEEEEEEE-ESSCCSSEETTEECCGGGSCCHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEeccccCCCc--chhHHHHHHhhc-cCCceEEEcCc-cccCcccccCCCCCCccccccHHHHHHHHHHHHHHHh
Confidence 9999999999999865 556788888864 56788888776 45432 12334567788999999999
Q ss_pred C
Q 003363 826 K 826 (826)
Q Consensus 826 ~ 826 (826)
|
T Consensus 319 K 319 (347)
T d1ju3a2 319 R 319 (347)
T ss_dssp S
T ss_pred C
Confidence 7
|
| >d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Rhodococcus sp., strain rha1 [TaxId: 1831]
Probab=99.77 E-value=4.1e-18 Score=175.31 Aligned_cols=233 Identities=17% Similarity=0.165 Sum_probs=138.0
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-ccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcch
Q 003363 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~ 651 (826)
+..++....- +...|+||++||.+..... ..|...+..|+ +||.|+++|+|| +|.+.............
T Consensus 13 ~~~~h~~~~G------~~~~p~ivllHG~~~~~~~~~~~~~~~~~L~-~~~~vi~~D~~G---~G~S~~~~~~~~~~~~~ 82 (281)
T d1c4xa_ 13 TLASHALVAG------DPQSPAVVLLHGAGPGAHAASNWRPIIPDLA-ENFFVVAPDLIG---FGQSEYPETYPGHIMSW 82 (281)
T ss_dssp TSCEEEEEES------CTTSCEEEEECCCSTTCCHHHHHGGGHHHHH-TTSEEEEECCTT---STTSCCCSSCCSSHHHH
T ss_pred CEEEEEEEEe------cCCCCEEEEECCCCCCCcHHHHHHHHHHHHh-CCCEEEEEeCCC---Cccccccccccccchhh
Confidence 4566655543 3346899999996644322 24556677775 489999999999 44443211111111122
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchh--------hhccCCCCCCchhh
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA--------LMVGTTDIPDWCYV 723 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~--------~~~~~~~~~~~~~~ 723 (826)
.++....+..+++. ...+++.++|||+||.+++.+|.++|++++++|+.++..... .+......+.+...
T Consensus 83 ~~~~~~~i~~~i~~--~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (281)
T d1c4xa_ 83 VGMRVEQILGLMNH--FGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELARLLAFYADPRLTPY 160 (281)
T ss_dssp HHHHHHHHHHHHHH--HTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHHHHHTGGGSCCHHHH
T ss_pred HHHhhhhccccccc--cccccceeccccccccccccccccccccccceEEeccccCccccchhHHHHHHHhhhhcccchh
Confidence 33444444334443 234689999999999999999999999999999988753210 00000000000000
Q ss_pred hhccCcCCccCCCCCCh-hhHHH----------------H---------hhcCcccccCCCCCcEEEEEeCCCCCCCcHH
Q 003363 724 ESYGSKGKDSFTESPSV-EDLTR----------------F---------HSKSPISHISKVKTPTIFLLGAQDLRVPVSN 777 (826)
Q Consensus 724 ~~~~~~~~~~~~~~~~~-~~~~~----------------~---------~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~ 777 (826)
..............+.. ..... . ....+...+.++++|+|+++|++|..+|++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~ 240 (281)
T d1c4xa_ 161 RELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRLPHDVLVFHGRQDRIVPLDT 240 (281)
T ss_dssp HHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTTCCSCEEEEEETTCSSSCTHH
T ss_pred hhhhhhhcccccccchhhhHHHHHhhhcccchhhhhhhhhhhHHhhhhhhhccchhhhhhhccceEEEEeCCCCCcCHHH
Confidence 00000000000000000 00000 0 0112223467889999999999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 778 GLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 778 ~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
+..+.+.+++ .+++++|++||..... ...++.+.+.+||+
T Consensus 241 ~~~~~~~~~~----~~~~~i~~~gH~~~~e-~p~~~~~~i~~Fl~ 280 (281)
T d1c4xa_ 241 SLYLTKHLKH----AELVVLDRCGHWAQLE-RWDAMGPMLMEHFR 280 (281)
T ss_dssp HHHHHHHCSS----EEEEEESSCCSCHHHH-SHHHHHHHHHHHHH
T ss_pred HHHHHHHCCC----CEEEEECCCCCchHHh-CHHHHHHHHHHHhC
Confidence 9888877754 7899999999986543 34578888999986
|
| >d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/lipase domain: Carboxylesterase Est species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.77 E-value=1.1e-18 Score=173.93 Aligned_cols=220 Identities=15% Similarity=0.118 Sum_probs=135.2
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.+.||++||.+.+ ...|...++.|+++||.|+++|+||.+...... .. ........++..++..+... +.+
T Consensus 11 ~~~vvliHG~~~~--~~~~~~l~~~L~~~G~~v~~~D~~G~G~s~~~~---~~-~~~~~~~~~~~~~~~~~~~~---~~~ 81 (242)
T d1tqha_ 11 ERAVLLLHGFTGN--SADVRMLGRFLESKGYTCHAPIYKGHGVPPEEL---VH-TGPDDWWQDVMNGYEFLKNK---GYE 81 (242)
T ss_dssp SCEEEEECCTTCC--THHHHHHHHHHHHTTCEEEECCCTTSSSCHHHH---TT-CCHHHHHHHHHHHHHHHHHH---TCC
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEeCCCCccccccc---cc-cchhHHHHHHHHHHhhhhhc---ccC
Confidence 3568899997654 557888999999999999999999955432221 11 11122234455555554443 357
Q ss_pred cEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCch--hhhhccC------cCC-ccCCCCCChhh
Q 003363 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC--YVESYGS------KGK-DSFTESPSVED 742 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~--~~~~~~~------~~~-~~~~~~~~~~~ 742 (826)
+++|+|||+||.+++.++.++|.....++.............. ....+. ....... ... ...........
T Consensus 82 ~~~l~G~S~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (242)
T d1tqha_ 82 KIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMYIKSEETMYE-GVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTLK 160 (242)
T ss_dssp CEEEEEETHHHHHHHHHHTTSCCSCEEEESCCSSCCCHHHHHH-HHHHHHHHHHHHHTCCHHHHHHHHHHHTTSCCTTHH
T ss_pred ceEEEEcchHHHHhhhhcccCcccccccccccccccchhHHHH-HHHHHHHHHhhhccchhhhHHHHHhhhhhhccchhh
Confidence 8999999999999999999988765544432222111000000 000000 0000000 000 00000000011
Q ss_pred HHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 743 LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 743 ~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
............+..+++|+|+++|++|..+|++.++.+++.++. ..+++++++++||.+...+...++.+.|.+||+
T Consensus 161 ~~~~~~~~~~~~~~~~~~p~lii~g~~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~Fl~ 238 (242)
T d1tqha_ 161 ALQELIADVRDHLDLIYAPTFVVQARHDEMINPDSANIIYNEIES--PVKQIKWYEQSGHVITLDQEKDQLHEDIYAFLE 238 (242)
T ss_dssp HHHHHHHHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHCCC--SSEEEEEETTCCSSGGGSTTHHHHHHHHHHHHH
T ss_pred cccccccccccccceeccccceeecccCCccCHHHHHHHHHHcCC--CCcEEEEECCCCCcCccccCHHHHHHHHHHHHH
Confidence 111111223345678899999999999999999999999888743 458999999999987766666688999999997
Q ss_pred H
Q 003363 823 K 823 (826)
Q Consensus 823 ~ 823 (826)
+
T Consensus 239 ~ 239 (242)
T d1tqha_ 239 S 239 (242)
T ss_dssp H
T ss_pred h
Confidence 6
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=99.77 E-value=5.6e-18 Score=182.05 Aligned_cols=253 Identities=13% Similarity=0.118 Sum_probs=160.3
Q ss_pred ccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCC----CCCC-c----cchHHHHHHHHCCcEEEEECCCCCCCCchhh
Q 003363 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPH----SVSL-S----SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 639 (826)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~----~~~~-~----~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~ 639 (826)
.-.||..|.+.+|.|+ ..+++|+||+.|+... .... . .+....++|+++||+|+++|.||.++++..+
T Consensus 30 ~~rDG~~L~~~v~~P~---~~~~~P~il~~~pYg~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~d~RG~g~S~G~~ 106 (381)
T d1mpxa2 30 PMRDGVKLHTVIVLPK---GAKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDVRGKYGSEGDY 106 (381)
T ss_dssp ECTTSCEEEEEEEEET---TCCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEECTTSTTCCSCC
T ss_pred ECCCCCEEEEEEEEeC---CCCCccEEEEEccCCCCCcccccccccccccchhHHHHHHhCCCEEEEEecCccCCCCCce
Confidence 3447899999999998 4678999999986321 1111 1 1123457899999999999999988776654
Q ss_pred hhc-----CCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC
Q 003363 640 LQS-----LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 714 (826)
Q Consensus 640 ~~~-----~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~ 714 (826)
... ........++.|..++++|+.++..++.+||+++|+|+||++++.+|+..|+.++++|..+|+.+.......
T Consensus 107 ~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~vg~~G~SygG~~~~~~a~~~~~~l~a~v~~~~~~d~~~~~~~ 186 (381)
T d1mpxa2 107 VMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMIDGWMGDDW 186 (381)
T ss_dssp CTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTSCCTTEEEEEEESCCCCTTTTSSS
T ss_pred eccchhhhhcccchhHHHHHHHHHHHHHhhcCCcCccceeeecccHHHHHHHHHHhccccccceeeeecccccccccccc
Confidence 321 122344567999999999999997788899999999999999999999999999999999998875321100
Q ss_pred CC--C---C--CchhhhhccC-cCCccCCCC-----------CC--------------hh-------hHHHHhhcCccc-
Q 003363 715 TD--I---P--DWCYVESYGS-KGKDSFTES-----------PS--------------VE-------DLTRFHSKSPIS- 753 (826)
Q Consensus 715 ~~--~---~--~~~~~~~~~~-~~~~~~~~~-----------~~--------------~~-------~~~~~~~~sp~~- 753 (826)
.. . . .|........ ......... +. .. ..+.+...++..
T Consensus 187 ~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~w~~~s~~~~ 266 (381)
T d1mpxa2 187 FNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTEHAAYDAFWQEQALDKV 266 (381)
T ss_dssp EETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHHTCSSCHHHHTTCHHHH
T ss_pred ccCchhhhccHHHHHhhhhhccccchhhhhhhhhHHHHHhcccccccchhhccccchHHHHHhhCCCccchhhhcCchhh
Confidence 00 0 0 0000000000 000000000 00 00 001222334433
Q ss_pred -ccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHh---CCCCEEEEEeCCCCCCCC------------CCCC-HHHHHHH
Q 003363 754 -HISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE---KGVETKVIVFPNDVHGIE------------RPQS-DFESFLN 816 (826)
Q Consensus 754 -~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~---~g~~~~~~~~p~~~H~~~------------~~~~-~~~~~~~ 816 (826)
...++++|+|+++|..|...... +...++.++. .+.+.++++-|. +|.-. ..+. .......
T Consensus 267 ~~~~~i~vP~l~i~G~~d~~~~~~-~~~~~~~~~~~~~~~~~~~LviGPw-~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (381)
T d1mpxa2 267 MARTPLKVPTMWLQGLWDQEDMWG-AIHSYAAMEPRDKRNTLNYLVMGPW-RHSQVNYDGSALGALNFEGDTARQFRHDV 344 (381)
T ss_dssp HHTSCCCSCEEEEEETTCSSCSSH-HHHHHHHHGGGCTTSSSEEEEEESC-CTTGGGSCCSEETTEECSSCHHHHHHHHT
T ss_pred hhhccccCceEEEeccccCCcccc-HHHHHHHHHHhccccCCceEEEecC-cCCCCccCCCcCCccccccchhhhhHHHH
Confidence 34578999999999999866544 4455555543 356889999886 56421 1111 2233455
Q ss_pred HHHHHHHHcC
Q 003363 817 IGLWFKKYCK 826 (826)
Q Consensus 817 i~~w~~~~l~ 826 (826)
+++||++|||
T Consensus 345 ~l~wFD~~LK 354 (381)
T d1mpxa2 345 LRPFFDQYLV 354 (381)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhC
Confidence 7899999997
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.76 E-value=1.4e-17 Score=177.22 Aligned_cols=189 Identities=11% Similarity=0.080 Sum_probs=134.3
Q ss_pred cCCC-CcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003363 103 SGNG-NGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (826)
Q Consensus 103 ~~s~-dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (826)
..|| ||++++|.. +..++++++ .++..+++.. + ..+..++|||||++|++....++ ..
T Consensus 9 ~fSP~dG~~~a~~~----------~g~v~v~d~--~~~~~~~~~~-~-----~~v~~~~~spDg~~l~~~~~~~g---~~ 67 (360)
T d1k32a3 9 DFSPLDGDLIAFVS----------RGQAFIQDV--SGTYVLKVPE-P-----LRIRYVRRGGDTKVAFIHGTREG---DF 67 (360)
T ss_dssp EEEECGGGCEEEEE----------TTEEEEECT--TSSBEEECSC-C-----SCEEEEEECSSSEEEEEEEETTE---EE
T ss_pred cccCCCCCEEEEEE----------CCeEEEEEC--CCCcEEEccC-C-----CCEEEEEECCCCCEEEEEEcCCC---CE
Confidence 3478 999999963 236777765 4445566532 2 46899999999999999876531 23
Q ss_pred EEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCccee
Q 003363 182 FELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (826)
Q Consensus 182 ~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (826)
+.+| .+++.+++......+ ..++|||||++|++...+
T Consensus 68 v~v~d~~~~~~~~~~~~~~~v----------~~~~~spdg~~l~~~~~~------------------------------- 106 (360)
T d1k32a3 68 LGIYDYRTGKAEKFEENLGNV----------FAMGVDRNGKFAVVANDR------------------------------- 106 (360)
T ss_dssp EEEEETTTCCEEECCCCCCSE----------EEEEECTTSSEEEEEETT-------------------------------
T ss_pred EEEEECCCCcEEEeeCCCceE----------Eeeeecccccccceeccc-------------------------------
Confidence 4556 345555443333333 789999999999987432
Q ss_pred ecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEE
Q 003363 260 EEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 339 (826)
Q Consensus 260 ~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~ 339 (826)
..+++|++++++...+. .........++|||||+. |+|.......... ......+++
T Consensus 107 -------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~----la~~~~~~~~~~~-----~~~~~~~~v 163 (360)
T d1k32a3 107 -------------FEIMTVDLETGKPTVIE-RSREAMITDFTISDNSRF----IAYGFPLKHGETD-----GYVMQAIHV 163 (360)
T ss_dssp -------------SEEEEEETTTCCEEEEE-ECSSSCCCCEEECTTSCE----EEEEEEECSSTTC-----SCCEEEEEE
T ss_pred -------------cccccccccccceeeee-ecccccccchhhccceee----eeeecccccccee-----eccccceee
Confidence 57899999998877662 233446678999999999 9997744331111 112236888
Q ss_pred EEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccC
Q 003363 340 VRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (826)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~ 393 (826)
+|+ .+++...++.+......+.|||||++|++.+.+.
T Consensus 164 ~d~-----------------~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~ 200 (360)
T d1k32a3 164 YDM-----------------EGRKIFAATTENSHDYAPAFDADSKNLYYLSYRS 200 (360)
T ss_dssp EET-----------------TTTEEEECSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred ecc-----------------ccCceeeecccccccccccccCCCCEEEEEeCCC
Confidence 898 7788888888877888899999999999998764
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=99.76 E-value=1.8e-18 Score=186.00 Aligned_cols=248 Identities=15% Similarity=0.175 Sum_probs=147.3
Q ss_pred ccCCCeeEEEEEEe--cCCCCCCCCCcEEEEEcCCCCCCCCccc------hHHHHHHHHCCcEEEEECCCCCCCCchhhh
Q 003363 569 TKGAQKPFEAIFVS--SSHKKDCSCDPLIVVLHGGPHSVSLSSY------SKSLAFLSSVGYSLLIVNYRGSLGFGEEAL 640 (826)
Q Consensus 569 ~~~~g~~l~~~~~~--P~~~~~~~~~P~vv~~HGg~~~~~~~~~------~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~ 640 (826)
+..||..+..+.+. +.+....++.|+||++||.+.+. ..| ...+..|+++||.|+++|+||.|.......
T Consensus 33 ~t~DG~~l~~~ri~~~~~~~~~~~~~~~vlllHG~~~~~--~~~~~~~~~~sla~~L~~~Gy~V~~~D~rG~G~S~~~~~ 110 (377)
T d1k8qa_ 33 VTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASA--TNWISNLPNNSLAFILADAGYDVWLGNSRGNTWARRNLY 110 (377)
T ss_dssp ECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCG--GGGSSSCTTTCHHHHHHHTTCEEEECCCTTSTTSCEESS
T ss_pred EcCCCCEEEEEEecCCCCCCccCCCCCeEEEECCCccch--hHHhhcCccchHHHHHHHCCCEEEEEcCCCCCCCCCCCC
Confidence 34467666655443 33334567789999999976553 233 236789999999999999999554432111
Q ss_pred hc-CCCC-----CCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEe---cCCccchhh-
Q 003363 641 QS-LPGK-----VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA---RNPLCNLAL- 710 (826)
Q Consensus 641 ~~-~~~~-----~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~---~~p~~~~~~- 710 (826)
.. .... +......|+.++++++++.. ..++|.|+||||||.+++.++..+|+.++.+++ .+|......
T Consensus 111 ~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~~--g~~~v~lvGhS~GG~ia~~~a~~~p~~~~~l~~~~~~~~~~~~~~~ 188 (377)
T d1k8qa_ 111 YSPDSVEFWAFSFDEMAKYDLPATIDFILKKT--GQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALAPVATVKYT 188 (377)
T ss_dssp SCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHHCHHHHTTEEEEEEESCCSCCSSC
T ss_pred CCCcchhhccCCHHHHhhhhHHHHHHHHHHHc--CCCCEEEEEecchHHHHHHHHHhhhhhhhhceeEeeccccccccch
Confidence 00 0001 11123568889999998863 347899999999999999999999876554433 333211100
Q ss_pred ------hccC------------CCCCCchhhh----------------------hccCc--C-----Ccc-CCCCCC---
Q 003363 711 ------MVGT------------TDIPDWCYVE----------------------SYGSK--G-----KDS-FTESPS--- 739 (826)
Q Consensus 711 ------~~~~------------~~~~~~~~~~----------------------~~~~~--~-----~~~-~~~~~~--- 739 (826)
+... ...+...... ..+.. . ... ....+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (377)
T d1k8qa_ 189 ETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFDTMNLNMSRLDVYLSHNPAGTS 268 (377)
T ss_dssp CSGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHHHHHHCCCGGGSCGGGHHHHHTTCCCCEE
T ss_pred hhHHHHHHhcchhhhhhhhhhhhccchhHHHHhhhhhhcchhhhhHHHHhhhhhhcCCCcccccHHHhhhhhhcccccch
Confidence 0000 0000000000 00000 0 000 000000
Q ss_pred hh------------------------hHHHHh-hcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEE
Q 003363 740 VE------------------------DLTRFH-SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 794 (826)
Q Consensus 740 ~~------------------------~~~~~~-~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 794 (826)
.. ....+. ...+...+.++++|+|+++|++|.+++++.++.+.+.+++ .+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~vPvL~i~G~~D~~~~~~~~~~l~~~lp~---~~~~ 345 (377)
T d1k8qa_ 269 VQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLADPHDVDLLLSKLPN---LIYH 345 (377)
T ss_dssp HHHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEEETTCSSSCHHHHHHHHTTCTT---EEEE
T ss_pred HHHHHHHHHHHhcCcchhccchhhhhhhhhhcccCchhhhHhhCCCCEEEEEeCCCCccCHHHHHHHHHHCCC---CeEE
Confidence 00 000000 1122334678899999999999999999998888777765 2678
Q ss_pred EEeCCCCCC--CCCCCCHHHHHHHHHHHHHH
Q 003363 795 IVFPNDVHG--IERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 795 ~~~p~~~H~--~~~~~~~~~~~~~i~~w~~~ 823 (826)
++++++||. +...+...+++..|++||+.
T Consensus 346 ~~i~~~GH~d~~~~~~a~~~v~~~I~~fl~~ 376 (377)
T d1k8qa_ 346 RKIPPYNHLDFIWAMDAPQAVYNEIVSMMGT 376 (377)
T ss_dssp EEETTCCTTHHHHCTTHHHHTHHHHHHHHHT
T ss_pred EEeCCCCCcchhhccchHHHHHHHHHHHHhc
Confidence 899999996 23455567889999999975
|
| >d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Acyl protein thioesterase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=7.5e-18 Score=167.75 Aligned_cols=195 Identities=13% Similarity=0.114 Sum_probs=129.6
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCC-----C-CCchhhhhcCCCC-CCcch---HHHHHHH
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS-----L-GFGEEALQSLPGK-VGSQD---VNDVLTA 658 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~-----~-g~G~~~~~~~~~~-~~~~~---~~D~~~~ 658 (826)
.+..++||++||.+.. ...|......+...++.+++++-+.. . ..+..|....... -...+ +++..+.
T Consensus 18 ~~~~~~VI~lHG~G~~--~~~~~~~~~~l~~~~~~~v~p~Ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~i~~~~~~ 95 (229)
T d1fj2a_ 18 RKATAAVIFLHGLGDT--GHGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQEDESGIKQAAEN 95 (229)
T ss_dssp SCCSEEEEEECCSSSC--HHHHHHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTCCBCHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCC--HHHHHHHHHHhcCCCCEEEeCCCCCCccccCCCcccccccccccccccchhhhHHHHHHHHH
Confidence 4556899999996543 33455555556678899998874320 0 0111111110000 01111 2333333
Q ss_pred HHHHHH---cCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCC
Q 003363 659 IDHVID---MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFT 735 (826)
Q Consensus 659 i~~l~~---~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (826)
++.+++ +..+|.+||+|+|+|+||.+++.++.++|++++++++.++........ ..
T Consensus 96 l~~li~~~~~~~i~~~ri~l~GfS~Gg~~a~~~~~~~~~~~~gvi~~sg~lp~~~~~--------------~~------- 154 (229)
T d1fj2a_ 96 IKALIDQEVKNGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASF--------------PQ------- 154 (229)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGGS--------------CS-------
T ss_pred HHHHhhhhhhcCCCccceeeeecccchHHHHHHHHhhccccCccccccccccccccc--------------cc-------
Confidence 333322 234899999999999999999999999999999999988753211100 00
Q ss_pred CCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhC--CCCEEEEEeCCCCCCCCCCCCHHHH
Q 003363 736 ESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK--GVETKVIVFPNDVHGIERPQSDFES 813 (826)
Q Consensus 736 ~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~--g~~~~~~~~p~~~H~~~~~~~~~~~ 813 (826)
.+ ....+.++|+|++||++|.+||++.+++.++.|++. +.+++++.|++.+|.+. .+.
T Consensus 155 --------------~~-~~~~~~~~Pvli~hG~~D~~vp~~~~~~~~~~L~~~~~~~~v~~~~~~g~gH~i~-----~~~ 214 (229)
T d1fj2a_ 155 --------------GP-IGGANRDISILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSC-----QQE 214 (229)
T ss_dssp --------------SC-CCSTTTTCCEEEEEETTCSSSCHHHHHHHHHHHHHHSCGGGEEEEEETTCCSSCC-----HHH
T ss_pred --------------cc-cccccccCceeEEEcCCCCeeCHHHHHHHHHHHHhcCCCCceEEEEeCCCCCccC-----HHH
Confidence 00 011123589999999999999999999999999874 67899999999999875 356
Q ss_pred HHHHHHHHHHHcC
Q 003363 814 FLNIGLWFKKYCK 826 (826)
Q Consensus 814 ~~~i~~w~~~~l~ 826 (826)
+..+.+||+++|.
T Consensus 215 ~~~~~~wL~~~Lp 227 (229)
T d1fj2a_ 215 MMDVKQFIDKLLP 227 (229)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHhHCc
Confidence 7889999999873
|
| >d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: Hypothetical protein Atu1826 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.76 E-value=1e-16 Score=157.80 Aligned_cols=202 Identities=17% Similarity=0.239 Sum_probs=150.2
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCC---CCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCC
Q 003363 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPH---SVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~---~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~ 646 (826)
+|....|++++..| .....|++|++||.|. +.........+..|+++||.|+.+||||.+.+... ..
T Consensus 6 ~g~~G~Le~~~~~~----~~~~~~~~l~~Hp~p~~GG~~~~~~~~~~a~~l~~~G~~~lrfn~RG~g~S~G~------~~ 75 (218)
T d2i3da1 6 NGPAGRLEGRYQPS----KEKSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQGE------FD 75 (218)
T ss_dssp EETTEEEEEEEECC----SSTTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTCCSC------CC
T ss_pred eCCCccEEEEEeCC----CCCCCCEEEEECCCcCcCCcCCcHHHHHHHHHHHhcCeeEEEEecCccCCCccc------cc
Confidence 33334799987644 3455799999998542 21222334567789999999999999996654332 24
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhc
Q 003363 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 726 (826)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 726 (826)
.+..+.+|..++++|+..+.. +..++.++|+|+||.+++.++.+.+ ...++++..|.....
T Consensus 76 ~~~~e~~d~~aa~~~~~~~~~-~~~~~~~~g~S~G~~~a~~~a~~~~-~~~~~~~~~~~~~~~----------------- 136 (218)
T d2i3da1 76 HGAGELSDAASALDWVQSLHP-DSKSCWVAGYSFGAWIGMQLLMRRP-EIEGFMSIAPQPNTY----------------- 136 (218)
T ss_dssp SSHHHHHHHHHHHHHHHHHCT-TCCCEEEEEETHHHHHHHHHHHHCT-TEEEEEEESCCTTTS-----------------
T ss_pred cchhHHHHHHHHHhhhhcccc-cccceeEEeeehHHHHHHHHHHhhc-cccceeecccccccc-----------------
Confidence 456678999999999998863 3457999999999999999988765 455566665543210
Q ss_pred cCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhC-CCCEEEEEeCCCCCCCC
Q 003363 727 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK-GVETKVIVFPNDVHGIE 805 (826)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~-g~~~~~~~~p~~~H~~~ 805 (826)
....+....+|+|++||+.|.+++..+..++++.++.. +..++++++||++|.|.
T Consensus 137 ------------------------~~~~~~~~~~p~l~i~g~~D~~~~~~~~~~l~~~~~~~~~~~~~~~vi~gAdHfF~ 192 (218)
T d2i3da1 137 ------------------------DFSFLAPCPSSGLIINGDADKVAPEKDVNGLVEKLKTQKGILITHRTLPGANHFFN 192 (218)
T ss_dssp ------------------------CCTTCTTCCSCEEEEEETTCSSSCHHHHHHHHHHHTTSTTCCEEEEEETTCCTTCT
T ss_pred ------------------------chhhccccCCCceeeecccceecChHHHHHHHHHHhhccCCCccEEEeCCCCCCCc
Confidence 01122345689999999999999999999999999864 66789999999999876
Q ss_pred CCCCHHHHHHHHHHHHHHHcC
Q 003363 806 RPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 806 ~~~~~~~~~~~i~~w~~~~l~ 826 (826)
....++.+.+.+||+++|.
T Consensus 193 --g~~~~l~~~v~~~l~~~l~ 211 (218)
T d2i3da1 193 --GKVDELMGECEDYLDRRLN 211 (218)
T ss_dssp --TCHHHHHHHHHHHHHHHHT
T ss_pred --CCHHHHHHHHHHHHHHhcC
Confidence 3445788999999999873
|
| >d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A1 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.76 E-value=1.9e-17 Score=169.24 Aligned_cols=227 Identities=15% Similarity=0.183 Sum_probs=136.9
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcc
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~ 650 (826)
.||..++.... + ..|.||++||.+.+ ...|...+..|+++||.|+++|+||.+ .+... ....
T Consensus 6 ~dG~~l~y~~~------G--~g~~ivlvHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G---~S~~~-----~~~~ 67 (274)
T d1a8qa_ 6 RDGVEIFYKDW------G--QGRPVVFIHGWPLN--GDAWQDQLKAVVDAGYRGIAHDRRGHG---HSTPV-----WDGY 67 (274)
T ss_dssp TTSCEEEEEEE------C--SSSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTST---TSCCC-----SSCC
T ss_pred cCCCEEEEEEE------C--CCCeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEeCCCCc---ccccc-----cccc
Confidence 45667764433 1 23568999997655 567888888999999999999999954 33211 1122
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHH-hCCCceeEEEecCCccchhhhccCCCCCCch--------
Q 003363 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG-QAPDKFVAAAARNPLCNLALMVGTTDIPDWC-------- 721 (826)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~-~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~-------- 721 (826)
...+....+..+++. +..+++.++|||+||.+++.+++ ..|++++++++.++.................
T Consensus 68 ~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~~~~~~~a~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (274)
T d1a8qa_ 68 DFDTFADDLNDLLTD--LDLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKSDKNPDGVPDEVFDALKN 145 (274)
T ss_dssp SHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHHHHHHH
T ss_pred cchhhHHHHHHHHHH--hhhhhhcccccccccchHHHHHHHhhhccceeEEEEeccCccchhhhhccchhhHHHHHHHHh
Confidence 344444444444444 34578999999999998887655 4589999998887643321111000000000
Q ss_pred --------h----hhhccCcCCccCCCCCChhh-------------------HHHHhhcCcccccCCCCCcEEEEEeCCC
Q 003363 722 --------Y----VESYGSKGKDSFTESPSVED-------------------LTRFHSKSPISHISKVKTPTIFLLGAQD 770 (826)
Q Consensus 722 --------~----~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~sp~~~~~~i~~PvLii~G~~D 770 (826)
+ ...+.. ............ ...+...+....+.++++|+|+++|++|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~G~~D 223 (274)
T d1a8qa_ 146 GVLTERSQFWKDTAEGFFS--ANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDLKKFDIPTLVVHGDDD 223 (274)
T ss_dssp HHHHHHHHHHHHHHHHHTT--TTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHHTTCCSCEEEEEETTC
T ss_pred hhhhhhHHHhhhhhhhhhh--ccccchhhhhhHHHHHHHhhhccchhhhhhHHHHhhccchHHHHHhccceeeeeccCCC
Confidence 0 000000 000000000000 0111122333457889999999999999
Q ss_pred CCCCcHHHHH-HHHHHHhCCCCEEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHH
Q 003363 771 LRVPVSNGLQ-YARALREKGVETKVIVFPNDVHGIER-PQSDFESFLNIGLWFKK 823 (826)
Q Consensus 771 ~~vp~~~~~~-~~~~l~~~g~~~~~~~~p~~~H~~~~-~~~~~~~~~~i~~w~~~ 823 (826)
..+|++...+ +.+.++ ++++++++++||.... .+...++.+.+.+||+|
T Consensus 224 ~~~~~~~~~~~~~~~~~----~~~~~~i~~~gH~~~~~~~~p~~~~~~i~~FL~k 274 (274)
T d1a8qa_ 224 QVVPIDATGRKSAQIIP----NAELKVYEGSSHGIAMVPGDKEKFNRDLLEFLNK 274 (274)
T ss_dssp SSSCGGGTHHHHHHHST----TCEEEEETTCCTTTTTSTTHHHHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHhCC----CCEEEEECCCCCcccccccCHHHHHHHHHHHHCc
Confidence 9999876544 434433 3789999999998654 34445777889999875
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Probab=99.75 E-value=1.4e-17 Score=163.40 Aligned_cols=184 Identities=16% Similarity=0.120 Sum_probs=131.8
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC-----cchHHHHHHHHHHH
Q 003363 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG-----SQDVNDVLTAIDHV 662 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~-----~~~~~D~~~~i~~l 662 (826)
+.+++|+||++||.+.. ...|....+.|+. ++.+++++.+.....+..+......... ...++++.+.|+.+
T Consensus 19 ~~~~~p~vv~lHG~g~~--~~~~~~l~~~l~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 95 (209)
T d3b5ea1 19 GKESRECLFLLHGSGVD--ETTLVPLARRIAP-TATLVAARGRIPQEDGFRWFERIDPTRFEQKSILAETAAFAAFTNEA 95 (209)
T ss_dssp TSSCCCEEEEECCTTBC--TTTTHHHHHHHCT-TSEEEEECCSEEETTEEESSCEEETTEECHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCC--HHHHHHHHHHhcc-CcEEEeeccCcCcccCccccccCCccccchhhHHHHHHHHHHHHHHH
Confidence 45678999999997654 3456666677754 7889998865432222211100000000 11245566677777
Q ss_pred HHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhh
Q 003363 663 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED 742 (826)
Q Consensus 663 ~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (826)
.++..+|.+||+|+|+|+||++++.++.++|++|+++++.+|.....
T Consensus 96 ~~~~~id~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~g~~~~~--------------------------------- 142 (209)
T d3b5ea1 96 AKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLD--------------------------------- 142 (209)
T ss_dssp HHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCS---------------------------------
T ss_pred HHHhCcccCCEEEEeeCChHHHHHHHHHhCCCcceEEEEeCCccccc---------------------------------
Confidence 77777999999999999999999999999999999999998853210
Q ss_pred HHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 743 LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 743 ~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
+.......++|++++||++|++++ ..+.++.+.|++.|.+++++++++ +|.+. .+....+.+||.
T Consensus 143 --------~~~~~~~~~~p~~~~~G~~D~~~~-~~~~~~~~~l~~~G~~v~~~~~~g-gH~i~-----~~~~~~~~~wl~ 207 (209)
T d3b5ea1 143 --------HVPATDLAGIRTLIIAGAADETYG-PFVPALVTLLSRHGAEVDARIIPS-GHDIG-----DPDAAIVRQWLA 207 (209)
T ss_dssp --------SCCCCCCTTCEEEEEEETTCTTTG-GGHHHHHHHHHHTTCEEEEEEESC-CSCCC-----HHHHHHHHHHHH
T ss_pred --------cccccccccchheeeeccCCCccC-HHHHHHHHHHHHCCCCeEEEEECC-CCCCC-----HHHHHHHHHHhC
Confidence 000112345899999999999987 567789999999999999999987 69885 245567888884
|
| >d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta-cleavage product hydrolase CumD species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.74 E-value=1.7e-17 Score=169.43 Aligned_cols=229 Identities=16% Similarity=0.119 Sum_probs=141.6
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-ccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcc
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~ 650 (826)
+|..+++..+ + ..|.||++||.+..... ..|...+..| +.||.|+++|+||.| .+.. ......
T Consensus 11 ~G~~~~Y~~~------G--~G~pvvllHG~~~~~~~~~~~~~~~~~l-~~~~~vi~~Dl~G~G---~S~~----~~~~~~ 74 (271)
T d1uk8a_ 11 AGVLTNYHDV------G--EGQPVILIHGSGPGVSAYANWRLTIPAL-SKFYRVIAPDMVGFG---FTDR----PENYNY 74 (271)
T ss_dssp TTEEEEEEEE------C--CSSEEEEECCCSTTCCHHHHHTTTHHHH-TTTSEEEEECCTTST---TSCC----CTTCCC
T ss_pred CCEEEEEEEE------e--eCCeEEEECCCCCCccHHHHHHHHHHHH-hCCCEEEEEeCCCCC---Cccc----cccccc
Confidence 5677764433 2 23668899997654321 2344455666 469999999999944 4321 111223
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchh-------hhccCCCCCCc--h
Q 003363 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-------LMVGTTDIPDW--C 721 (826)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~-------~~~~~~~~~~~--~ 721 (826)
..++....+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.++..... ........... .
T Consensus 75 ~~~~~~~~~~~~~~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (271)
T d1uk8a_ 75 SKDSWVDHIIGIMDA--LEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGYTPSIENMRN 152 (271)
T ss_dssp CHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCSCCCCCHHHHHHHTCCSCHHHHHH
T ss_pred cccccchhhhhhhhh--hcCCCceEeeccccceeehHHHHhhhccchheeecccCCCcccchhhhhhhhhccchhHHHHH
Confidence 466777777777776 455789999999999999999999999999999887653210 00000000000 0
Q ss_pred hhhhccCcC--------------------CccCC-CCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHH
Q 003363 722 YVESYGSKG--------------------KDSFT-ESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 780 (826)
Q Consensus 722 ~~~~~~~~~--------------------~~~~~-~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~ 780 (826)
....+.... ...+. ...................+.++++|+|+++|++|..+|++.+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~ 232 (271)
T d1uk8a_ 153 LLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSSLR 232 (271)
T ss_dssp HHHHHCSCGGGCCHHHHHHHHHHHTSTTHHHHHHTTSCSSTHHHHHHHCCCHHHHTTCCSCEEEEEETTCSSSCHHHHHH
T ss_pred HHHHHhhhcccchhHHHHHHHhhhhchhHHHHHHhhcchhhhhhhhhccccHHHHHhhccceeEEecCCCCCcCHHHHHH
Confidence 000000000 00000 000000000001122234577899999999999999999999988
Q ss_pred HHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 781 YARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 781 ~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+.+.+.+ +++++++++||.+... ...++.+.|.+||++
T Consensus 233 ~~~~~~~----~~~~~~~~~gH~~~~e-~p~~~~~~i~~Fl~e 270 (271)
T d1uk8a_ 233 LGELIDR----AQLHVFGRCGHWTQIE-QTDRFNRLVVEFFNE 270 (271)
T ss_dssp HHHHCTT----EEEEEESSCCSCHHHH-THHHHHHHHHHHHHT
T ss_pred HHHhCCC----CEEEEECCCCCchHHH-CHHHHHHHHHHHHhc
Confidence 8877754 7999999999976543 445788999999986
|
| >d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Burkholderia xenovorans [TaxId: 36873]
Probab=99.73 E-value=1.9e-17 Score=170.36 Aligned_cols=216 Identities=16% Similarity=0.192 Sum_probs=130.6
Q ss_pred CcEEEEEcCCCCCCCCccchH---HHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (826)
.|+||++||.+.+ ...|.. .+..+.++||.|+++|+||.| .+... ........+..+.+..+++. +
T Consensus 30 G~~ivllHG~~~~--~~~~~~~~~~l~~~~~~g~~v~~~D~~G~G---~S~~~----~~~~~~~~~~~~~i~~li~~--l 98 (283)
T d2rhwa1 30 GETVIMLHGGGPG--AGGWSNYYRNVGPFVDAGYRVILKDSPGFN---KSDAV----VMDEQRGLVNARAVKGLMDA--L 98 (283)
T ss_dssp SSEEEEECCCSTT--CCHHHHHTTTHHHHHHTTCEEEEECCTTST---TSCCC----CCSSCHHHHHHHHHHHHHHH--H
T ss_pred CCeEEEECCCCCC--hhHHHHHHHHHHHHHHCCCEEEEEeCCCCc---ccccc----cccccccchhhhhccccccc--c
Confidence 3789999997655 333332 344567899999999999944 33211 11112222333334444443 3
Q ss_pred CCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhh-hhccC-------cCC---ccCCCC
Q 003363 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYV-ESYGS-------KGK---DSFTES 737 (826)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~---~~~~~~ 737 (826)
+.+++.++|||+||.+++.++.++|++++++|+.+|..-................ ..... ... ......
T Consensus 99 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (283)
T d2rhwa1 99 DIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSL 178 (283)
T ss_dssp TCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGGG
T ss_pred cccccccccccchHHHHHHHHHHhhhhcceEEEeCCCcCCcchhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHhhccccc
Confidence 4578999999999999999999999999999998874321110000000000000 00000 000 000000
Q ss_pred CChhhHH--------------HH---------hhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEE
Q 003363 738 PSVEDLT--------------RF---------HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 794 (826)
Q Consensus 738 ~~~~~~~--------------~~---------~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 794 (826)
...+... .+ ...+....+.++++|+|+++|++|..+|++.+.++.+.+.+ +++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~----~~~ 254 (283)
T d2rhwa1 179 ITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDD----ARL 254 (283)
T ss_dssp CCHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHSSS----EEE
T ss_pred CcHHHHHHHHHHhhhhhhhhhhhhhhhhhhhccccchHHHHhhCCCCEEEEEeCCCCCcCHHHHHHHHHhCCC----CEE
Confidence 0000000 00 01223445678899999999999999999999988887753 799
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 795 IVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 795 ~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
++++++||.+... ...++.+.+.+||++
T Consensus 255 ~~i~~~gH~~~~e-~p~~~~~~i~~FLk~ 282 (283)
T d2rhwa1 255 HVFSKCGHWAQWE-HADEFNRLVIDFLRH 282 (283)
T ss_dssp EEESSCCSCHHHH-THHHHHHHHHHHHHH
T ss_pred EEECCCCCchHHh-CHHHHHHHHHHHHhC
Confidence 9999999976543 345788889999975
|
| >d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase L species: Streptomyces lividans [TaxId: 1916]
Probab=99.73 E-value=2.3e-17 Score=168.51 Aligned_cols=232 Identities=14% Similarity=0.175 Sum_probs=141.0
Q ss_pred ccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
+..||..++...+.|+ ..|+||++||.+.. ...|...+..|+++||.|+++|+|| +|.+... ..
T Consensus 4 ~~~dG~~l~y~~~G~~------~~~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G---~G~s~~~-----~~ 67 (275)
T d1a88a_ 4 TTSDGTNIFYKDWGPR------DGLPVVFHHGWPLS--ADDWDNQMLFFLSHGYRVIAHDRRG---HGRSDQP-----ST 67 (275)
T ss_dssp ECTTSCEEEEEEESCT------TSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCC-----SS
T ss_pred EecCCCEEEEEEecCC------CCCeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEeccc---ccccccc-----cc
Confidence 4457788988887654 23678999997765 5578888899999999999999999 4443211 11
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEEecc-hHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCC--CCch----
Q 003363 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSH-GGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI--PDWC---- 721 (826)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~-GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~--~~~~---- 721 (826)
....+++.+.+..+++. ++.+++.++|||+ ||.++..++.++|++++++|+.++............. ....
T Consensus 68 ~~~~~~~~~~~~~~l~~--l~~~~~~~vg~s~~G~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (275)
T d1a88a_ 68 GHDMDTYAADVAALTEA--LDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTNPDGLPLEVFDEF 145 (275)
T ss_dssp CCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBCBTTBTTSBCHHHHHHH
T ss_pred ccccccccccccccccc--ccccccccccccccccchhhcccccCcchhhhhhhhcccccccccchhhhhhhhhhhhhhh
Confidence 23455555555555554 3456788999887 5666677788999999999988764321111000000 0000
Q ss_pred ----------h-hhhccCcCCc--cCCCCCChhhHHH-------------------HhhcCcccccCCCCCcEEEEEeCC
Q 003363 722 ----------Y-VESYGSKGKD--SFTESPSVEDLTR-------------------FHSKSPISHISKVKTPTIFLLGAQ 769 (826)
Q Consensus 722 ----------~-~~~~~~~~~~--~~~~~~~~~~~~~-------------------~~~~sp~~~~~~i~~PvLii~G~~ 769 (826)
+ .......... ...........+. +...+....+.++++|+|+++|++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~ 225 (275)
T d1a88a_ 146 RAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDDLKRIDVPVLVAHGTD 225 (275)
T ss_dssp HHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSCEEEEEETT
T ss_pred hhhhhhhhHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhHHHHhhccccceeecCC
Confidence 0 0000000000 0000001111100 111222334667899999999999
Q ss_pred CCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 770 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 770 D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
|..+|.....+...++. .++++++++++||.+... ...++.+.|.+||+
T Consensus 226 D~~~~~~~~~~~~~~~~---~~~~~~~i~~~gH~~~~e-~p~~~~~~i~~Fl~ 274 (275)
T d1a88a_ 226 DQVVPYADAAPKSAELL---ANATLKSYEGLPHGMLST-HPEVLNPDLLAFVK 274 (275)
T ss_dssp CSSSCSTTTHHHHHHHS---TTEEEEEETTCCTTHHHH-CHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHhC---CCCEEEEECCCCCchHHh-CHHHHHHHHHHHHc
Confidence 99999876554444332 248999999999986544 44578899999986
|
| >d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC {Janthinobacterium sp. J3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta cleavage compound hydrolase CarC species: Janthinobacterium sp. J3 [TaxId: 213804]
Probab=99.73 E-value=4.6e-17 Score=165.76 Aligned_cols=232 Identities=14% Similarity=0.103 Sum_probs=139.6
Q ss_pred eccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCC
Q 003363 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (826)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~-~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~ 646 (826)
+.+-+|.+++... . ++ .|.||++||.+.... ...|...+..| ++||.|+++|+||.+ .+.. .
T Consensus 6 ~~~~dg~~l~y~~---~---G~--g~~vvllHG~~~~~~~~~~~~~~~~~l-~~~~~v~~~D~~G~G---~S~~-----~ 68 (268)
T d1j1ia_ 6 FVNAGGVETRYLE---A---GK--GQPVILIHGGGAGAESEGNWRNVIPIL-ARHYRVIAMDMLGFG---KTAK-----P 68 (268)
T ss_dssp EEEETTEEEEEEE---E---CC--SSEEEEECCCSTTCCHHHHHTTTHHHH-TTTSEEEEECCTTST---TSCC-----C
T ss_pred EEEECCEEEEEEE---E---cC--CCeEEEECCCCCCccHHHHHHHHHHHH-hcCCEEEEEcccccc---cccC-----C
Confidence 3344677776432 2 22 256889999765422 12355566666 569999999999954 3321 1
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC------CCCCCc
Q 003363 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT------TDIPDW 720 (826)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~------~~~~~~ 720 (826)
......++....+..+++.-.+ .+++.++|||+||.+++.++.++|++++++|+.+|.......... ......
T Consensus 69 ~~~~~~~~~~~~~~~~i~~l~~-~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (268)
T d1j1ia_ 69 DIEYTQDRRIRHLHDFIKAMNF-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTRE 147 (268)
T ss_dssp SSCCCHHHHHHHHHHHHHHSCC-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCSCHH
T ss_pred ccccccccccccchhhHHHhhh-cccceeeeccccccccchhhccChHhhheeeecCCCccccccchhhhhhhhhhhhhh
Confidence 1222355555555555554222 257999999999999999999999999999998874321110000 000000
Q ss_pred hhhhhccCcCCccCCCCCChhhH-------------------HHHh----hcCcccccCCCCCcEEEEEeCCCCCCCcHH
Q 003363 721 CYVESYGSKGKDSFTESPSVEDL-------------------TRFH----SKSPISHISKVKTPTIFLLGAQDLRVPVSN 777 (826)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~----~~sp~~~~~~i~~PvLii~G~~D~~vp~~~ 777 (826)
.............+. ....... ..+. .......+.++++|+|+++|++|..+|++.
T Consensus 148 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~~~~ 226 (268)
T d1j1ia_ 148 GMVHLVKALTNDGFK-IDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQGKDDKVVPVET 226 (268)
T ss_dssp HHHHHHHHHSCTTCC-CCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSCEEEEEETTCSSSCHHH
T ss_pred hhHHHHHHHhhhhhh-hhhhhhHHHHHhhhhhhhhhhhhhhhhhhhccccccchhhhHhhCCCCEEEEEeCCCCCCCHHH
Confidence 000000000000000 0000000 0000 111223467899999999999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 778 GLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 778 ~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+..+.+.+++ +++++++++||.+... ...++.+.+.+||.+
T Consensus 227 ~~~~~~~~~~----~~~~~~~~~gH~~~~e-~p~~~~~~i~~FL~~ 267 (268)
T d1j1ia_ 227 AYKFLDLIDD----SWGYIIPHCGHWAMIE-HPEDFANATLSFLSL 267 (268)
T ss_dssp HHHHHHHCTT----EEEEEESSCCSCHHHH-SHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC----CEEEEECCCCCchHHh-CHHHHHHHHHHHHcC
Confidence 8888877754 8999999999986533 445888999999976
|
| >d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Mammalian epoxide hydrolase, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2.1e-17 Score=173.30 Aligned_cols=231 Identities=17% Similarity=0.200 Sum_probs=144.9
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcch
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~ 651 (826)
+|..+++... + ..|+||++||.+.. ...|...+..|+++||.|+++|+|| +|.+.. +.......
T Consensus 20 ~g~~i~y~~~------G--~gp~vlllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G---~G~S~~---~~~~~~~~ 83 (322)
T d1zd3a2 20 PRVRLHFVEL------G--SGPAVCLCHGFPES--WYSWRYQIPALAQAGYRVLAMDMKG---YGESSA---PPEIEEYC 83 (322)
T ss_dssp TTEEEEEEEE------C--CSSEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEEECTT---STTSCC---CSCGGGGS
T ss_pred CCCEEEEEEE------c--CCCeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEecccc---cccccc---cccccccc
Confidence 4666765433 1 23789999997765 5578888999999999999999999 444321 11222334
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchh-------------------hhc
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-------------------LMV 712 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~-------------------~~~ 712 (826)
.++....+..+++. ++.+++.++|||+||.+++.+|.++|++++++|+.++..... ...
T Consensus 84 ~~~~~~~i~~l~~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (322)
T d1zd3a2 84 MEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPLESIKANPVFDYQLYF 161 (322)
T ss_dssp HHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCCCCSSSCHHHHHHTCGGGHHHHHT
T ss_pred ccccchhhhhhhhc--ccccccccccccchHHHHHHHHHhCCccccceEEEcccccccccccchhhhhhccchhhhHHhh
Confidence 66666666666665 456789999999999999999999999999999876422100 000
Q ss_pred ----------------------cCCCC---CCchhhhhccC----cCCccCCCCCChhhHHHH-----------------
Q 003363 713 ----------------------GTTDI---PDWCYVESYGS----KGKDSFTESPSVEDLTRF----------------- 746 (826)
Q Consensus 713 ----------------------~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~----------------- 746 (826)
..... ........... .................+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (322)
T d1zd3a2 162 QEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWYR 241 (322)
T ss_dssp TSTTHHHHHHHHTHHHHHHHHSCCTTSCCCCTTSHHHHTSSSTTSCSSCCCCTTCCHHHHHHHHHHHHHHTTHHHHHTTS
T ss_pred hccchhhhhhhhhHHHHHHHHhhccchhhhhHHHHhhhhccccccccchhhhhhccHHHHHHHHHHHhhccccccccccc
Confidence 00000 00000000000 000000000111111110
Q ss_pred -----hhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 003363 747 -----HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 747 -----~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~ 821 (826)
....+.....++++|+|+++|++|..++++..+.+.+.+. ..++++++++||..... ...++.+.|.+||
T Consensus 242 ~~~~~~~~~~~~~~~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~~~gH~~~~e-~p~~v~~~i~~FL 316 (322)
T d1zd3a2 242 NMERNWKWACKSLGRKILIPALMVTAEKDFVLVPQMSQHMEDWIP----HLKRGHIEDCGHWTQMD-KPTEVNQILIKWL 316 (322)
T ss_dssp CHHHHHHHHHTTTTCCCCSCEEEEEETTCSSSCGGGGTTGGGTCT----TCEEEEETTCCSCHHHH-SHHHHHHHHHHHH
T ss_pred ccccccccchhhhcccCCCCEEEEEeCCCCCCCHHHHHHHHHhCC----CCEEEEECCCCCchHHh-CHHHHHHHHHHHH
Confidence 0112223456789999999999999999988766655443 47899999999976543 3347888999999
Q ss_pred HHHc
Q 003363 822 KKYC 825 (826)
Q Consensus 822 ~~~l 825 (826)
+.+-
T Consensus 317 ~~~~ 320 (322)
T d1zd3a2 317 DSDA 320 (322)
T ss_dssp HHHT
T ss_pred hhcC
Confidence 9874
|
| >d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Arylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.73 E-value=2.2e-17 Score=168.09 Aligned_cols=232 Identities=16% Similarity=0.174 Sum_probs=142.9
Q ss_pred eccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCC
Q 003363 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (826)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~ 647 (826)
|..-+|..++...+ + ..|.||++||++.+ ...|...+..|+++||.|+++|+||.+ .+.. ..
T Consensus 3 f~~~dG~~l~y~~~------G--~g~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G---~S~~-----~~ 64 (271)
T d1va4a_ 3 FVAKDGTQIYFKDW------G--SGKPVLFSHGWLLD--ADMWEYQMEYLSSRGYRTIAFDRRGFG---RSDQ-----PW 64 (271)
T ss_dssp EECTTSCEEEEEEE------S--SSSEEEEECCTTCC--GGGGHHHHHHHHTTTCEEEEECCTTST---TSCC-----CS
T ss_pred EEeECCeEEEEEEE------c--CCCeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEeccccc---cccc-----cc
Confidence 44557788864433 1 23568899997755 557888889999999999999999944 3321 12
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHH-HHHhCCCceeEEEecCCccchhhhccCCC--CCCch---
Q 003363 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH-LIGQAPDKFVAAAARNPLCNLALMVGTTD--IPDWC--- 721 (826)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~-~a~~~p~~~~a~v~~~p~~~~~~~~~~~~--~~~~~--- 721 (826)
.....+++...+..+.+. ++.+++.++|||+||.+++. ++.++|++++++++.++............ .....
T Consensus 65 ~~~~~~~~~~~~~~~~~~--~~~~~~~~vg~s~gG~~~~~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (271)
T d1va4a_ 65 TGNDYDTFADDIAQLIEH--LDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGVPLDVFAR 142 (271)
T ss_dssp SCCSHHHHHHHHHHHHHH--HTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTSBCHHHHHH
T ss_pred cccccccccccceeeeee--cCCCcceeeccccccccccccccccccceeeEEEeecccccccccchhhhhhhhhhHHHH
Confidence 223456666666666555 35678999999999876654 56678999999998876543211100000 00000
Q ss_pred h-----------hhhccCcC-CccCCCCCCh-------------------hhHHHHhhcCcccccCCCCCcEEEEEeCCC
Q 003363 722 Y-----------VESYGSKG-KDSFTESPSV-------------------EDLTRFHSKSPISHISKVKTPTIFLLGAQD 770 (826)
Q Consensus 722 ~-----------~~~~~~~~-~~~~~~~~~~-------------------~~~~~~~~~sp~~~~~~i~~PvLii~G~~D 770 (826)
+ ...+.... .......... .....+...+....+.++++|+|+++|++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvl~i~g~~D 222 (271)
T d1va4a_ 143 FKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGD 222 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSCEEEEEETTC
T ss_pred HHHHhhhhhhhhhhhhcchhhcccchhhhhhhHHHHHHhhhhhhhhhhhhhcccccchhhhhhhhhhcccceeecccCCC
Confidence 0 00000000 0000000000 000111222333456778999999999999
Q ss_pred CCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 771 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 771 ~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
..+|++...++.+.+.. .++++++|++||..... ...++.+.|.+||+|
T Consensus 223 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~gH~~~~e-~p~~~~~~i~~fL~k 271 (271)
T d1va4a_ 223 QIVPFETTGKVAAELIK---GAELKVYKDAPHGFAVT-HAQQLNEDLLAFLKR 271 (271)
T ss_dssp SSSCGGGTHHHHHHHST---TCEEEEETTCCTTHHHH-THHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHhCC---CCEEEEECCCCCchHHh-CHHHHHHHHHHHHCc
Confidence 99999888877766532 37889999999976543 345788889999874
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.72 E-value=1.4e-16 Score=163.55 Aligned_cols=251 Identities=14% Similarity=0.108 Sum_probs=161.7
Q ss_pred EeCCC--CCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCc
Q 003363 160 VPSPS--GSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 236 (826)
Q Consensus 160 ~~SPd--G~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~ 236 (826)
.+||| |++|||+++++ +|+++ .+++.++++...... ..++|||||++|||++......
T Consensus 5 ~~sPdi~G~~v~f~~~~d-----l~~~d~~~g~~~~Lt~~~~~~----------~~p~~SPDG~~iaf~~~~~~~~---- 65 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCCDD-----LWEHDLKSGSTRKIVSNLGVI----------NNARFFPDGRKIAIRVMRGSSL---- 65 (281)
T ss_dssp CEEEEEETTEEEEEETTE-----EEEEETTTCCEEEEECSSSEE----------EEEEECTTSSEEEEEEEESTTC----
T ss_pred ccCCCCCCCEEEEEeCCc-----EEEEECCCCCEEEEecCCCcc----------cCEEECCCCCEEEEEEeeCCCC----
Confidence 46888 99999998754 99998 778888888755444 7899999999999987643110
Q ss_pred cCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCC-----CCccceEEEeeCCCCCcc
Q 003363 237 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-----SLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~-----~~~~~~~~wSPDg~~~~~ 311 (826)
...+||+++..+|+.++|+.... ......+.|+|||+.
T Consensus 66 ----------------------------------~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~--- 108 (281)
T d1k32a2 66 ----------------------------------NTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNL--- 108 (281)
T ss_dssp ----------------------------------CEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCE---
T ss_pred ----------------------------------CceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCE---
Confidence 23679999999999999942111 123457889999999
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEec
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~ 391 (826)
|+|....... .....++.++. +++..+..... ...+.|++||+.+++...
T Consensus 109 -l~~~~~~~~~---------~~~~~~~~~~~-----------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 158 (281)
T d1k32a2 109 -IISTDAMQPF---------SSMTCLYRVEN-----------------DGINFVPLNLG---PATHILFADGRRVIGRNT 158 (281)
T ss_dssp -EEEECTTSSS---------TTCCEEEEEEG-----------------GGTEEEECCSC---SCSEEEEETTEEEEEESC
T ss_pred -EEEEEccCCC---------ccceeeeeecC-----------------CCceeEEecCC---ccceeeecCCCeEEEeec
Confidence 9997643321 12234666776 55555555433 345788899988888766
Q ss_pred cCCCCC-CCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEE
Q 003363 392 KSSVDS-GAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470 (826)
Q Consensus 392 ~~~~~~-g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l 470 (826)
...... ....+.............. ....... .....+.|+++ .+++.....+..+|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~----------~~~~~~~~~~~--~~~~~~~~~~~~~l 216 (281)
T d1k32a2 159 FELPHWKGYRGGTRGKIWIEVNSGAF----------KKIVDMS----------THVSSPVIVGH--RIYFITDIDGFGQI 216 (281)
T ss_dssp SCCTTSTTCCSTTCCEEEEEEETTEE----------EEEECCS----------SCCEEEEEETT--EEEEEECTTSSCEE
T ss_pred cccceeeeeccCCcceeeeeccccce----------eeccCCc----------cccceeeeecc--ccceecccccccce
Confidence 542110 0001111111111111111 1100000 01223445554 57777777788899
Q ss_pred EEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 003363 471 ISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 524 (826)
Q Consensus 471 ~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~ 524 (826)
|.+|+++++.++|+.... .....+++||+.|+|... .+||++++.+++
T Consensus 217 ~~~d~~g~~~~~lt~~~~-~~~~~~SpDG~~I~f~~~-----~~l~~~d~~~g~ 264 (281)
T d1k32a2 217 YSTDLDGKDLRKHTSFTD-YYPRHLNTDGRRILFSKG-----GSIYIFNPDTEK 264 (281)
T ss_dssp EEEETTSCSCEECCCCCS-SCEEEEEESSSCEEEEET-----TEEEEECTTTCC
T ss_pred EEEeCCCCceEEeecCCC-cccccCcCCCCEEEEEeC-----CEEEEEECCCCC
Confidence 999999999999987654 334579999999998663 369999987654
|
| >d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2) {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Salicylic acid-binding protein 2 (SABP2) species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.72 E-value=3e-17 Score=164.98 Aligned_cols=217 Identities=17% Similarity=0.134 Sum_probs=137.1
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCc
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 672 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 672 (826)
|.||++||.+.+ ...|...+..|+++||.|+++|+||.|.+.... .......+....+..+++... ...+
T Consensus 3 ~~vvllHG~~~~--~~~w~~~~~~L~~~g~~vi~~Dl~G~G~S~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~ 72 (258)
T d1xkla_ 3 KHFVLVHGACHG--GWSWYKLKPLLEAAGHKVTALDLAASGTDLRKI-------EELRTLYDYTLPLMELMESLS-ADEK 72 (258)
T ss_dssp CEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEECCCTTSTTCCCCG-------GGCCSHHHHHHHHHHHHHTSC-SSSC
T ss_pred CcEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCC-------CCCcchHHHHHHHhhhhhccc-cccc
Confidence 678999997655 557888999999999999999999954432111 112234555544444444432 2368
Q ss_pred EEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh---------ccCCCCCCchhhhh--ccCcC-----------
Q 003363 673 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM---------VGTTDIPDWCYVES--YGSKG----------- 730 (826)
Q Consensus 673 v~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~---------~~~~~~~~~~~~~~--~~~~~----------- 730 (826)
+.++|||+||.+++.++.++|++++.+|+.++....... ........+..... .....
T Consensus 73 ~~lvghS~Gg~va~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (258)
T d1xkla_ 73 VILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSMFFGPK 152 (258)
T ss_dssp EEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTSCCEEEECCHH
T ss_pred ccccccchhHHHHHHHhhhhccccceEEEecccCCCcccchHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhcccccccHH
Confidence 999999999999999999999999999988875321100 00000000000000 00000
Q ss_pred --CccCCCCCChhhHH--------------HHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEE
Q 003363 731 --KDSFTESPSVEDLT--------------RFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 794 (826)
Q Consensus 731 --~~~~~~~~~~~~~~--------------~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 794 (826)
..........+... .+...........+++|+|+++|++|..+|++..+.+.+.+.. +++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~ 228 (258)
T d1xkla_ 153 FLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNIGV----TEA 228 (258)
T ss_dssp HHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSCEEEEEETTCTTTTHHHHHHHHHHHCC----SEE
T ss_pred HHHHHhhhcccHHHHHHhhhhhhhhhhhhhhhhhhhhcccccccccceeEeeecCCCCCCHHHHHHHHHHCCC----CEE
Confidence 00000000111111 1112223344556779999999999999999999888888754 689
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 795 IVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 795 ~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
++++++||.....+ ..++.+.|.+|+++|
T Consensus 229 ~~i~~~gH~~~~e~-P~~~~~~l~e~~~k~ 257 (258)
T d1xkla_ 229 IEIKGADHMAMLCE-PQKLCASLLEIAHKY 257 (258)
T ss_dssp EEETTCCSCHHHHS-HHHHHHHHHHHHHHC
T ss_pred EEECCCCCchHHhC-HHHHHHHHHHHHHhc
Confidence 99999999865444 458889999999886
|
| >d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.72 E-value=9.6e-18 Score=173.14 Aligned_cols=227 Identities=14% Similarity=0.201 Sum_probs=143.3
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCc
Q 003363 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~ 649 (826)
+-+|..++...+-|+ ..|+||++||.+.+ ...|...+..|+ .||.|+++|+||. |.+.. + ...
T Consensus 13 ~~~g~~i~y~~~G~~------~~p~lvllHG~~~~--~~~~~~~~~~L~-~~~~vi~~d~~G~---G~S~~---~--~~~ 75 (291)
T d1bn7a_ 13 EVLGERMHYVDVGPR------DGTPVLFLHGNPTS--SYLWRNIIPHVA-PSHRCIAPDLIGM---GKSDK---P--DLD 75 (291)
T ss_dssp EETTEEEEEEEESCS------SSSCEEEECCTTCC--GGGGTTTHHHHT-TTSCEEEECCTTS---TTSCC---C--SCC
T ss_pred EECCEEEEEEEeCCC------CCCeEEEECCCCCC--HHHHHHHHHHHh-cCCEEEEEeCCCC---ccccc---c--ccc
Confidence 346788887665443 34679999997765 456777777874 5999999999994 44321 1 122
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhcc-------------CCC
Q 003363 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-------------TTD 716 (826)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~-------------~~~ 716 (826)
...+++.+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++++.++......... ...
T Consensus 76 ~~~~~~~~~l~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (291)
T d1bn7a_ 76 YFFDDHVRYLDAFIEA--LGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARETFQAFRTAD 153 (291)
T ss_dssp CCHHHHHHHHHHHHHH--TTCCSEEEEEEHHHHHHHHHHHHHCGGGEEEEEEEEECCCBCSGGGSCHHHHHHHHHHTSTT
T ss_pred cchhHHHHHHhhhhhh--hccccccccccccccchhHHHHHhCCcceeeeeeeccccCCccchhhhhhhhhHHHHHhhhh
Confidence 3466666667666666 4557899999999999999999999999999988765432110000 000
Q ss_pred CC------CchhhhhccCcCCccCCCCCChhhHHHHh-----------------hc--------------CcccccCCCC
Q 003363 717 IP------DWCYVESYGSKGKDSFTESPSVEDLTRFH-----------------SK--------------SPISHISKVK 759 (826)
Q Consensus 717 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~--------------sp~~~~~~i~ 759 (826)
.. ...+..... ...............+. .. .....+.+++
T Consensus 154 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 230 (291)
T d1bn7a_ 154 VGRELIIDQNAFIEGVL---PKCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNEIPIAGEPANIVALVEAYMNWLHQSP 230 (291)
T ss_dssp HHHHHHTTSCHHHHTHH---HHTCSSCCCHHHHHHHHGGGSSGGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHHCC
T ss_pred hHHHhhhhhhhhHHhhh---hhhccccchHHHHHHHHHHhcchhhhHHHHHHHHHhhhhhhhchhhhhhhhhhhhhhcCC
Confidence 00 000000000 00000000000000000 00 0112346788
Q ss_pred CcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 760 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 760 ~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+|+|+++|++|..+|+..+.++.+.+++ .++++++++||.+.... ..++.+.+.+||+.
T Consensus 231 ~P~lii~G~~D~~~~~~~~~~~~~~~~~----~~~~~i~~~gH~~~~e~-p~~v~~~i~~fL~~ 289 (291)
T d1bn7a_ 231 VPKLLFWGTPGVLIPPAEAARLAESLPN----CKTVDIGPGLHYLQEDN-PDLIGSEIARWLPG 289 (291)
T ss_dssp SCEEEEEEEECSSSCHHHHHHHHHHSTT----EEEEEEEEESSCGGGTC-HHHHHHHHHHHSGG
T ss_pred CCEEEEEeCCCCCcCHHHHHHHHHHCCC----CEEEEECCCCCchHHhC-HHHHHHHHHHHHHh
Confidence 9999999999999999999888887754 79999999999765443 45788888899864
|
| >d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase F species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.72 E-value=5.6e-17 Score=165.40 Aligned_cols=232 Identities=16% Similarity=0.185 Sum_probs=141.9
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCC
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~ 646 (826)
+|+..||..++.... + ..|.||++||.+.. ...|...+..|.++||.|+++|+||.+ .+.. .
T Consensus 2 ~f~~~dG~~i~y~~~------G--~g~pvvllHG~~~~--~~~~~~~~~~l~~~~~~vi~~D~~G~G---~S~~-----~ 63 (273)
T d1a8sa_ 2 TFTTRDGTQIYYKDW------G--SGQPIVFSHGWPLN--ADSWESQMIFLAAQGYRVIAHDRRGHG---RSSQ-----P 63 (273)
T ss_dssp EEECTTSCEEEEEEE------S--CSSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTST---TSCC-----C
T ss_pred EEEeeCCcEEEEEEE------C--CCCeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEechhcC---cccc-----c
Confidence 456668888865443 1 23568899997755 557888899999999999999999944 4321 1
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHH-HHHhCCCceeEEEecCCccchhhhccCCCCCCch--h-
Q 003363 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH-LIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC--Y- 722 (826)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~-~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~--~- 722 (826)
.......+..+.+..+++. ++.++..++|||+||.+++. ++.++|++++++++.++................. .
T Consensus 64 ~~~~~~~~~~~~~~~~l~~--l~~~~~~lvg~s~gG~~~~~~~a~~~p~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 141 (273)
T d1a8sa_ 64 WSGNDMDTYADDLAQLIEH--LDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEANPGGLPMEVFD 141 (273)
T ss_dssp SSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHHH
T ss_pred cccccccchHHHHHHHHHh--cCccceeeeeeccCCccchhhhhhhhhhccceeEEEecccccccccccccccchhhhhh
Confidence 1223455655555555555 34567899999998866555 5556799999998887644221110000000000 0
Q ss_pred -------------hhhcc-CcC--CccCCCCCChhhHH-------------------HHhhcCcccccCCCCCcEEEEEe
Q 003363 723 -------------VESYG-SKG--KDSFTESPSVEDLT-------------------RFHSKSPISHISKVKTPTIFLLG 767 (826)
Q Consensus 723 -------------~~~~~-~~~--~~~~~~~~~~~~~~-------------------~~~~~sp~~~~~~i~~PvLii~G 767 (826)
..... ... .............. .+...+....+.++++|+|+++|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvlii~g 221 (273)
T d1a8sa_ 142 GIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKKIDVPTLVVHG 221 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHTCCSCEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhcccchhhhhHHHHHHHHHhhcccchhhhhhhHHHhhhhhhhHHHHhhccceEEEec
Confidence 00000 000 00000000111100 11123334556788999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 768 AQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 768 ~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
++|..+|.+....+.+.+.. .++++++|++||.+... +..++.+.|.+||+
T Consensus 222 ~~D~~~~~~~~~~~~~~~~~---~~~~~~i~~~gH~~~~e-~p~~~~~~i~~Fl~ 272 (273)
T d1a8sa_ 222 DADQVVPIEASGIASAALVK---GSTLKIYSGAPHGLTDT-HKDQLNADLLAFIK 272 (273)
T ss_dssp TTCSSSCSTTTHHHHHHHST---TCEEEEETTCCSCHHHH-THHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCC---CCEEEEECCCCCchHHh-CHHHHHHHHHHHcC
Confidence 99999999887777766533 37889999999986543 34578888999986
|
| >d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A2 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.71 E-value=2.4e-16 Score=161.04 Aligned_cols=216 Identities=16% Similarity=0.183 Sum_probs=129.2
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.|+||++||.+.+ ...|...+..|+++||.|+++|+||.+ .+... ......+++.+.+..+++. ++.+
T Consensus 23 G~~ivllHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G---~S~~~-----~~~~~~~~~~~dl~~~l~~--l~~~ 90 (277)
T d1brta_ 23 GQPVVLIHGFPLS--GHSWERQSAALLDAGYRVITYDRRGFG---QSSQP-----TTGYDYDTFAADLNTVLET--LDLQ 90 (277)
T ss_dssp SSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTST---TSCCC-----SSCCSHHHHHHHHHHHHHH--HTCC
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEeCCCCC---ccccc-----ccccchhhhhhhhhhhhhc--cCcc
Confidence 4679999997755 557888888999999999999999944 43211 1122355555555555554 3457
Q ss_pred cEEEEEecchH-HHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCC--ch---------------hhhhccCc---C
Q 003363 672 KVTVVGGSHGG-FLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD--WC---------------YVESYGSK---G 730 (826)
Q Consensus 672 rv~l~G~S~GG-~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~--~~---------------~~~~~~~~---~ 730 (826)
++.|+|||+|| .++..++.++|++++++|+.+++.............. .. ....+... .
T Consensus 91 ~~~lvGhS~G~~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (277)
T d1brta_ 91 DAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNL 170 (277)
T ss_dssp SEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHTTH
T ss_pred cccccccccchhhhhHHHHHhhhcccceEEEecCCCcccccchhhhhhhhhhhHHHHHHHhhhccchhhhhhcccccccc
Confidence 89999999996 5556667788999999999887543211100000000 00 00000000 0
Q ss_pred CccCCCCCChhhHHHH------------------hhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCE
Q 003363 731 KDSFTESPSVEDLTRF------------------HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVET 792 (826)
Q Consensus 731 ~~~~~~~~~~~~~~~~------------------~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~ 792 (826)
................ ...+....+.++++|+|+++|++|..++++...+...+. ...+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~---~~~~ 247 (277)
T d1brta_ 171 DENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLPIENTARVFHKA---LPSA 247 (277)
T ss_dssp HHHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGGGCCSCEEEEEETTCSSSCGGGTHHHHHHH---CTTS
T ss_pred chhhhhhhhHHHhhhhhcccchhhhhhhhhhhhhhhhhHHHHHHhcCccceeEeecCCCCcCHHHHHHHHHHh---CCCC
Confidence 0000000000000000 011122345678999999999999999987654433322 2247
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 793 KVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 793 ~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+++++|++||.+... ...++.+.|.+||+|
T Consensus 248 ~~~~i~~~gH~~~~e-~p~~~~~~i~~fL~k 277 (277)
T d1brta_ 248 EYVEVEGAPHGLLWT-HAEEVNTALLAFLAK 277 (277)
T ss_dssp EEEEETTCCTTHHHH-THHHHHHHHHHHHHC
T ss_pred EEEEECCCCCchHHh-CHHHHHHHHHHHHCc
Confidence 899999999986543 445788999999975
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.71 E-value=2.6e-17 Score=160.62 Aligned_cols=185 Identities=20% Similarity=0.192 Sum_probs=129.5
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHH---
Q 003363 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID--- 664 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~--- 664 (826)
..+..|+||++||++.. ...|....+.++ .++.|+.++.+...+ +..... ........+..++...++.+..
T Consensus 13 ~~~~~P~vi~lHG~G~~--~~~~~~~~~~l~-~~~~v~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (203)
T d2r8ba1 13 GVAGAPLFVLLHGTGGD--ENQFFDFGARLL-PQATILSPVGDVSEH-GAARFF-RRTGEGVYDMVDLERATGKMADFIK 87 (203)
T ss_dssp CCTTSCEEEEECCTTCC--HHHHHHHHHHHS-TTSEEEEECCSEEET-TEEESS-CBCGGGCBCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCC--HHHHHHHHHHhc-cCCeEEEeccccccc-cccccc-cccCccccchhHHHHHHHHHHHHHH
Confidence 45678999999996644 345555666664 478888887654221 111100 0111222233344333333222
Q ss_pred --cCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhh
Q 003363 665 --MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED 742 (826)
Q Consensus 665 --~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (826)
...+|.++|+++|+|+||.+++.++..+|+.+.++++.+|......
T Consensus 88 ~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~~~~~~~~-------------------------------- 135 (203)
T d2r8ba1 88 ANREHYQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP-------------------------------- 135 (203)
T ss_dssp HHHHHHTCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC--------------------------------
T ss_pred HhhhcCCCceEEEEEecCHHHHHHHHHHhhhhcccceeeecccccccc--------------------------------
Confidence 1226889999999999999999999999999999999888542100
Q ss_pred HHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 743 LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 743 ~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
........+|++++||++|.+||++++++++++|++.|+++++++|++ +|++. .+..+.+.+||.
T Consensus 136 ---------~~~~~~~~~~~~i~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~~~~~g-gH~~~-----~~~~~~~~~wl~ 200 (203)
T d2r8ba1 136 ---------KISPAKPTRRVLITAGERDPICPVQLTKALEESLKAQGGTVETVWHPG-GHEIR-----SGEIDAVRGFLA 200 (203)
T ss_dssp ---------CCCCCCTTCEEEEEEETTCTTSCHHHHHHHHHHHHHHSSEEEEEEESS-CSSCC-----HHHHHHHHHHHG
T ss_pred ---------ccccccccchhhccccCCCCcccHHHHHHHHHHHHHCCCCEEEEEECC-CCcCC-----HHHHHHHHHHHH
Confidence 001122357999999999999999999999999999999999999987 79975 356788999998
Q ss_pred HH
Q 003363 823 KY 824 (826)
Q Consensus 823 ~~ 824 (826)
+|
T Consensus 201 ~~ 202 (203)
T d2r8ba1 201 AY 202 (203)
T ss_dssp GG
T ss_pred hc
Confidence 86
|
| >d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: YdeN-like domain: Hypothetical protein YdeN species: Bacillus subtilis [TaxId: 1423]
Probab=99.71 E-value=5.2e-17 Score=156.05 Aligned_cols=180 Identities=15% Similarity=0.108 Sum_probs=119.3
Q ss_pred EEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcE
Q 003363 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 673 (826)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv 673 (826)
.||++||...+....-+....+.|+++||.|+++|++|.+. ...+|....++.+.+ ....++
T Consensus 3 ~V~~vHG~~~~~~~~~~~~l~~~L~~~G~~v~~~d~p~~~~---------------~~~~~~~~~l~~~~~---~~~~~~ 64 (186)
T d1uxoa_ 3 QVYIIHGYRASSTNHWFPWLKKRLLADGVQADILNMPNPLQ---------------PRLEDWLDTLSLYQH---TLHENT 64 (186)
T ss_dssp EEEEECCTTCCTTSTTHHHHHHHHHHTTCEEEEECCSCTTS---------------CCHHHHHHHHHTTGG---GCCTTE
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHhCCCEEEEeccCCCCc---------------chHHHHHHHHHHHHh---ccCCCc
Confidence 58999996655333235667889999999999999998432 124555555544443 345789
Q ss_pred EEEEecchHHHHHHHHHhCCCce--eEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCc
Q 003363 674 TVVGGSHGGFLTTHLIGQAPDKF--VAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP 751 (826)
Q Consensus 674 ~l~G~S~GG~~a~~~a~~~p~~~--~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 751 (826)
.|+|||+||++++.++.++++.. .+++..+|..... +.+..... +...+. +
T Consensus 65 ~lvGhS~Gg~~a~~~a~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~--------~~~~~~-----------~ 117 (186)
T d1uxoa_ 65 YLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSL--------PTLQMLDE--------FTQGSF-----------D 117 (186)
T ss_dssp EEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCC--------TTCGGGGG--------GTCSCC-----------C
T ss_pred EEEEechhhHHHHHHHHhCCccceeeEEeecccccccc--------hhhhhhhh--------hhcccc-----------c
Confidence 99999999999999999988643 4444444432211 01100000 000010 1
Q ss_pred ccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCC--CCHHHHHHHHHHHHHH
Q 003363 752 ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP--QSDFESFLNIGLWFKK 823 (826)
Q Consensus 752 ~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~--~~~~~~~~~i~~w~~~ 823 (826)
.....++.+|+|++||++|++||+++++++++.+. +++++++++||.+... ....+..+.+.+||.+
T Consensus 118 ~~~~~~~~~p~lvi~g~~D~~vp~~~~~~l~~~~~-----~~~~~~~~~gH~~~~~~~~~~~~~~~~l~~~~~~ 186 (186)
T d1uxoa_ 118 HQKIIESAKHRAVIASKDDQIVPFSFSKDLAQQID-----AALYEVQHGGHFLEDEGFTSLPIVYDVLTSYFSK 186 (186)
T ss_dssp HHHHHHHEEEEEEEEETTCSSSCHHHHHHHHHHTT-----CEEEEETTCTTSCGGGTCSCCHHHHHHHHHHHHC
T ss_pred ccccccCCCCEEEEecCCCCCCCHHHHHHHHHHcC-----CEEEEeCCCCCcCccccCcccHHHHHHHHHHHcC
Confidence 11112345899999999999999999999998873 5899999999976432 2334677788888764
|
| >d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Xanthobacter autotrophicus [TaxId: 280]
Probab=99.70 E-value=1.5e-17 Score=173.83 Aligned_cols=236 Identities=12% Similarity=0.067 Sum_probs=144.4
Q ss_pred ccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
...+|..++..-.-++ ...|+||++||.+.. ...|...+..|+++||.|+++|+||.| .+.. +....
T Consensus 29 ~~~~g~~~~y~~~G~~-----~~~p~llllHG~~~~--~~~~~~~~~~l~~~~~~vi~~Dl~G~G---~S~~---~~~~~ 95 (310)
T d1b6ga_ 29 PGYPGLRAHYLDEGNS-----DAEDVFLCLHGEPTW--SYLYRKMIPVFAESGARVIAPDFFGFG---KSDK---PVDEE 95 (310)
T ss_dssp TTCTTCEEEEEEEECT-----TCSCEEEECCCTTCC--GGGGTTTHHHHHHTTCEEEEECCTTST---TSCE---ESCGG
T ss_pred cCCCCEEEEEEEecCC-----CCCCEEEEECCCCCc--hHHHHHHHHHhhccCceEEEeeecCcc---cccc---ccccc
Confidence 3457888876554432 346899999997755 567778889999999999999999944 4321 11122
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh--------hccCCCCCCc
Q 003363 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--------MVGTTDIPDW 720 (826)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~--------~~~~~~~~~~ 720 (826)
....+++.+.+..+++. ++.+++.|+||||||.+++.+|.++|++++++|++++..-... .........+
T Consensus 96 ~~~~~~~~~~l~~~l~~--l~~~~~~lvGhS~Gg~ia~~~A~~~P~~V~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (310)
T d1b6ga_ 96 DYTFEFHRNFLLALIER--LDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFVTQPADGFT 173 (310)
T ss_dssp GCCHHHHHHHHHHHHHH--HTCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCCCCCTTTCTHHHHTTTSSTTTHH
T ss_pred cccccccccchhhhhhh--ccccccccccceecccccccchhhhccccceEEEEcCccCCCcccchhHHHHhhcchhhhh
Confidence 23466777776666665 3457899999999999999999999999999999876532110 0000000000
Q ss_pred --hhhhhccCcC-----CccCCCCCChhhHHHHh------------------------------hcCcccccCCCCCcEE
Q 003363 721 --CYVESYGSKG-----KDSFTESPSVEDLTRFH------------------------------SKSPISHISKVKTPTI 763 (826)
Q Consensus 721 --~~~~~~~~~~-----~~~~~~~~~~~~~~~~~------------------------------~~sp~~~~~~i~~PvL 763 (826)
.......... ..........+....+. .........++++|+|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l 253 (310)
T d1b6ga_ 174 AWKYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQACIDISTEAISFWQNDWNGQTF 253 (310)
T ss_dssp HHHHHHHSCSSCCHHHHHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTCCSEEE
T ss_pred hhhhhhccchhhhhhhhhhccCccccHHHHHHHHhhcchhhhhhcchhhhhhhhhhhhhhhhhhhhhhHHhhcccCCCeE
Confidence 0000000000 00000000000000000 0000112356889999
Q ss_pred EEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 764 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 764 ii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+++|++|..+++.....+.+.+... .++++++++||.+. .+....+.+.|.+|++.
T Consensus 254 ~i~G~~D~~~~~~~~~~~~~~~~~~---~~~~~i~~~GH~~~-~e~pe~v~~~i~~Fl~~ 309 (310)
T d1b6ga_ 254 MAIGMKDKLLGPDVMYPMKALINGC---PEPLEIADAGHFVQ-EFGEQVAREALKHFAET 309 (310)
T ss_dssp EEEETTCSSSSHHHHHHHHHHSTTC---CCCEEETTCCSCGG-GGHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCC---ccEEEECCCcCchh-hhCHHHHHHHHHHHHhC
Confidence 9999999999998888877766543 36778999999654 44444566677777753
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=99.69 E-value=3.4e-16 Score=168.49 Aligned_cols=252 Identities=12% Similarity=0.123 Sum_probs=159.3
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCC----CC--CC----ccchHHHHHHHHCCcEEEEECCCCCCCCchhh
Q 003363 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPH----SV--SL----SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 639 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~----~~--~~----~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~ 639 (826)
-.||..|.+.+|.|+ ..+++|+||+.|+... .. .. .......++|+++||+|+.+|+||.++++..+
T Consensus 35 mrDG~~L~~~v~~P~---~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~d~RG~g~S~G~~ 111 (385)
T d2b9va2 35 MRDGVKLYTVIVIPK---NARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQDIRGKYGSQGDY 111 (385)
T ss_dssp CTTSCEEEEEEEEET---TCCSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEEECTTSTTCCSCC
T ss_pred CCCCCEEEEEEEEcC---CCCceeEEEEEccCCCCCccccCCcccccccccchHHHHHHhCCcEEEEEcCCcccCCCCce
Confidence 347889999999998 4678999999875311 00 00 01223567899999999999999988887765
Q ss_pred hhc-----CCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC
Q 003363 640 LQS-----LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 714 (826)
Q Consensus 640 ~~~-----~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~ 714 (826)
... ....++..+.+|..++|+|+.+++..+.+||+++|+|+||++++.+|+..|+.+++++..+++.+.......
T Consensus 112 ~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~vg~~G~SygG~~~~~~a~~~~~~l~a~~~~~~~~d~~~~~~~ 191 (385)
T d2b9va2 112 VMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAPESPMVDGWMGDDW 191 (385)
T ss_dssp CTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEEEEEEEEHHHHHHHHHHTSCCTTEEEEEEEEECCCTTTBSSS
T ss_pred eeccccccccccchhhHHHHHHHHHHHHHhccCccccceeeccccHHHHHHHHHHhccCCcceEEEEecccccccccccc
Confidence 432 223455668999999999999987678899999999999999999999999999999998887664321100
Q ss_pred ----CCCC---CchhhhhccCc-CCccCCCCCC-------------------------hh-------hHHHHhhcCcccc
Q 003363 715 ----TDIP---DWCYVESYGSK-GKDSFTESPS-------------------------VE-------DLTRFHSKSPISH 754 (826)
Q Consensus 715 ----~~~~---~~~~~~~~~~~-~~~~~~~~~~-------------------------~~-------~~~~~~~~sp~~~ 754 (826)
.... .|......... .......... .. ..+.+...++...
T Consensus 192 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~d~~w~~~s~~~~ 271 (385)
T d2b9va2 192 FHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAHPAYDAFWQGQALDKI 271 (385)
T ss_dssp EETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHHHCCSSSHHHHTTCHHHH
T ss_pred cCCchhccccHHHHHhhhhhcccCccccccchHHHHHHHHhccccccchhcccchhhhhhhhccCcccchhhhhcChhHH
Confidence 0000 00000000000 0000000000 00 0012223344333
Q ss_pred c--CCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhC--CCCEEEEEeCCCCCCCCC------------CC-CHHHHHHHH
Q 003363 755 I--SKVKTPTIFLLGAQDLRVPVSNGLQYARALREK--GVETKVIVFPNDVHGIER------------PQ-SDFESFLNI 817 (826)
Q Consensus 755 ~--~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~--g~~~~~~~~p~~~H~~~~------------~~-~~~~~~~~i 817 (826)
+ .++.+|+|++.|..|... ...+.+.++.++.+ +.+.++++-|. +|.... .+ ........+
T Consensus 272 ~~~~~i~vP~l~~~g~~dd~~-~~g~~~~~~~l~~~~~~~~~~LiiGPw-~H~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 349 (385)
T d2b9va2 272 LAQRKPTVPMLWEQGLWDQED-MWGAIHAWQALKDADVKAPNTLVMGPW-RHSGVNYNGSTLGPLEFEGDTAHQYRRDVF 349 (385)
T ss_dssp HHHHCCCSCEEEEEETTCSSC-SSHHHHHHHHHHHTTCSSCEEEEEESC-CTTGGGSCCSEETTEECSSCHHHHHHHHTH
T ss_pred HhhccccCceEEEEecccCCc-ccchHHHHHHHHhhccCCCcEEEEeCC-cCCCcccccccccccccCcccchhhHHHHH
Confidence 3 357789999999887654 45666777777765 45678888776 464211 11 122344567
Q ss_pred HHHHHHHcC
Q 003363 818 GLWFKKYCK 826 (826)
Q Consensus 818 ~~w~~~~l~ 826 (826)
++||++|||
T Consensus 350 l~WFD~~LK 358 (385)
T d2b9va2 350 RPFFDEYLK 358 (385)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHcC
Confidence 899999997
|
| >d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree (Hevea brasiliensis) [TaxId: 3981]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Hydroxynitrile lyase species: Rubber tree (Hevea brasiliensis) [TaxId: 3981]
Probab=99.69 E-value=5.9e-17 Score=162.97 Aligned_cols=215 Identities=15% Similarity=0.084 Sum_probs=131.7
Q ss_pred EEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEE
Q 003363 595 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVT 674 (826)
Q Consensus 595 vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~ 674 (826)
.|++||.+++ ...|...+..|+++||.|+++|+||.|.+.... ......++..+.+..++... ...+++.
T Consensus 5 ~vliHG~~~~--~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~-------~~~~~~~~~~~~l~~~~~~~-~~~~~~~ 74 (256)
T d3c70a1 5 FVLIHTICHG--AWIWHKLKPLLEALGHKVTALDLAASGVDPRQI-------EEIGSFDEYSEPLLTFLEAL-PPGEKVI 74 (256)
T ss_dssp EEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTTSTTCSCCG-------GGCCSHHHHTHHHHHHHHHS-CTTCCEE
T ss_pred EEEeCCCCCC--HHHHHHHHHHHHhCCCEEEEEcCCCCCCCCCCC-------CCCCCHHHHHHHhhhhhhhh-cccccee
Confidence 5889997765 557888899999999999999999954432111 11223555555554444432 2357899
Q ss_pred EEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhc----------cCCCCCCc---hhhhh--------ccCcC-Cc
Q 003363 675 VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV----------GTTDIPDW---CYVES--------YGSKG-KD 732 (826)
Q Consensus 675 l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~----------~~~~~~~~---~~~~~--------~~~~~-~~ 732 (826)
|+|||+||.+++.++.++|++++++|+.++........ ........ ..... ..... ..
T Consensus 75 lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (256)
T d3c70a1 75 LVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEITGLKLGFTLLRE 154 (256)
T ss_dssp EEEETTHHHHHHHHHHHHGGGEEEEEEESCCCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETTEEEEEEECCHHHHHH
T ss_pred ecccchHHHHHHHHhhcCchhhhhhheeccccCCcccchhhHhhhhhhhhhhhhhhHHHhhhccccccchhhhhhhhhhh
Confidence 99999999999999999999999999887643211000 00000000 00000 00000 00
Q ss_pred cCCCCCChhh-HH-H------------HhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeC
Q 003363 733 SFTESPSVED-LT-R------------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 798 (826)
Q Consensus 733 ~~~~~~~~~~-~~-~------------~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p 798 (826)
.+........ .. . ............+++|+++++|++|..+|++..+.+.+.+. ..++++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~p----~~~~~~i~ 230 (256)
T d3c70a1 155 NLYTLCGPEEYELAKMLTRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYK----PDKVYKVE 230 (256)
T ss_dssp HTSTTSCHHHHHHHHHHCCCBCCCHHHHTTSCCCCTTTGGGSCEEEEECTTCSSSCHHHHHHHHHHSC----CSEEEECC
T ss_pred hhhhhcchhhHHHhhhhhhhhhHHHhhhhhcchhhhhhccccceeEEeecCCCCCCHHHHHHHHHHCC----CCEEEEEC
Confidence 0000000000 00 0 01111223344467999999999999999988877777664 36899999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 799 NDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 799 ~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
++||.....+ ..++.+.+.+|+++|
T Consensus 231 ~agH~~~~e~-P~~~~~~l~~~~~~~ 255 (256)
T d3c70a1 231 GGDHKLQLTK-TKEIAEILQEVADTY 255 (256)
T ss_dssp SCCSCHHHHS-HHHHHHHHHHHHHHC
T ss_pred CCCCchHHhC-HHHHHHHHHHHHHhc
Confidence 9999866443 347788888888765
|
| >d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium radiobacter [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Agrobacterium radiobacter [TaxId: 358]
Probab=99.69 E-value=2.9e-16 Score=161.80 Aligned_cols=218 Identities=17% Similarity=0.210 Sum_probs=129.8
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.|+||++||.+.+ ...|...+..|++ +|.|+++|+||.+ .+.... .........+++...+..+++. ++.+
T Consensus 28 gp~vv~lHG~~~~--~~~~~~~~~~l~~-~~~vi~~D~~G~G---~s~~~~-~~~~~~~~~~~~a~~~~~~~~~--l~~~ 98 (293)
T d1ehya_ 28 GPTLLLLHGWPGF--WWEWSKVIGPLAE-HYDVIVPDLRGFG---DSEKPD-LNDLSKYSLDKAADDQAALLDA--LGIE 98 (293)
T ss_dssp SSEEEEECCSSCC--GGGGHHHHHHHHT-TSEEEEECCTTST---TSCCCC-TTCGGGGCHHHHHHHHHHHHHH--TTCC
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEecCCccc---CCcccc-ccccccccchhhhhHHHhhhhh--cCcc
Confidence 4789999997755 5678888888855 8999999999944 332111 1122233456666666666665 4457
Q ss_pred cEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh--ccCCC-CCCchh--------hhhccC----------cC
Q 003363 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM--VGTTD-IPDWCY--------VESYGS----------KG 730 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~--~~~~~-~~~~~~--------~~~~~~----------~~ 730 (826)
++.++|||+||.+++.++.++|+++.++|+.+|....... ..... ...+.. ....+. ..
T Consensus 99 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (293)
T d1ehya_ 99 KAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQPDFGPVYFGLGHVHESWYSQFHQLDMAVEVVGSSREVCKKYFKHF 178 (293)
T ss_dssp CEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSCTTC-----------CCHHHHHTTCHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccccccccccccchhcccccCccccceeeeeeccCccccchhhhhhhhhhhhhhhhhccchhhhhhccchhHHHHHHHHh
Confidence 8999999999999999999999999999998875421000 00000 000000 000000 00
Q ss_pred ---CccCCCCCChhhHHH-----------------Hhh---cCc--c--cccCCCCCcEEEEEeCCCCCCCcHHHHHHHH
Q 003363 731 ---KDSFTESPSVEDLTR-----------------FHS---KSP--I--SHISKVKTPTIFLLGAQDLRVPVSNGLQYAR 783 (826)
Q Consensus 731 ---~~~~~~~~~~~~~~~-----------------~~~---~sp--~--~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~ 783 (826)
..........+.... +.. ... . .....+++|+|+++|++|..+|.....++.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~G~~D~~~~~~~~~~~~~ 258 (293)
T d1ehya_ 179 FDHWSYRDELLTEEELEVHVDNCMKPDNIHGGFNYYRANIRPDAALWTDLDHTMSDLPVTMIWGLGDTCVPYAPLIEFVP 258 (293)
T ss_dssp HHHTSSSSCCSCHHHHHHHHHHHTSTTHHHHHHHHHHHHSSSSCCCCCTGGGSCBCSCEEEEEECCSSCCTTHHHHHHHH
T ss_pred hhhcccccccccHHHHHhhhhccccchhhhhhhhhhhhccccchhhhhhhhhhccCCceEEEEeCCCCCcCHHHHHHHHH
Confidence 000000001111110 100 000 0 1124567999999999999999887766655
Q ss_pred HHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 784 ALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 784 ~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
.+. .++++++++++||.+..++. .++.+.|.+||+
T Consensus 259 ~~~---~~~~~~~i~~~gH~~~~e~P-e~~~~~I~~Ffr 293 (293)
T d1ehya_ 259 KYY---SNYTMETIEDCGHFLMVEKP-EIAIDRIKTAFR 293 (293)
T ss_dssp HHB---SSEEEEEETTCCSCHHHHCH-HHHHHHHHHHCC
T ss_pred HhC---CCCEEEEECCCCCchHHHCH-HHHHHHHHHhhC
Confidence 543 35899999999997654333 356666666653
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=3.9e-17 Score=166.71 Aligned_cols=202 Identities=14% Similarity=0.093 Sum_probs=137.6
Q ss_pred ccCCC-eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCC--
Q 003363 569 TKGAQ-KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG-- 645 (826)
Q Consensus 569 ~~~~g-~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~-- 645 (826)
.+.+| .++.++++.|.++++++++|+|+++||++...... .....+..+.+|+.|++++|++...++.........
T Consensus 19 ~s~dg~~~~~~~v~~P~~~~~~~~yPvi~~lhG~~~~~~~~-~~~~~~~~~~~~~~vV~v~~~~~~~~~~~~r~~d~~~~ 97 (265)
T d2gzsa1 19 DSVDGTRHYRVWTAVPNTTAPASGYPILYMLDGNAVMDRLD-DELLKQLSEKTPPVIVAVGYQTNLPFDLNSRAYDYTPA 97 (265)
T ss_dssp ECTTSSCEEEEEEEEESSCCCTTCEEEEEESSHHHHHHHCC-HHHHHHHTTSCCCEEEEEEESSSSSCCHHHHHHHTCCG
T ss_pred EcCCCCEEEEEEEEcCCCCCCCCCceEEEEecCcchhhhHH-HHHHHHHHhcCCCeEEEecCCCCCcCcccccccccccc
Confidence 33344 57999999999998899999999999965332111 112334456789999999999987665432211000
Q ss_pred ---------------CCCc-chHH--HHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccc
Q 003363 646 ---------------KVGS-QDVN--DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (826)
Q Consensus 646 ---------------~~~~-~~~~--D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~ 707 (826)
..+. .... ....++.++.++..+|+++++|+|+|+||++++.++.+ ++.|.++++.+|...
T Consensus 98 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~G~S~GG~~a~~~~~~-~~~f~~~~a~s~~~~ 176 (265)
T d2gzsa1 98 AESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS-SSYFRSYYSASPSLG 176 (265)
T ss_dssp GGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH-CSSCSEEEEESGGGS
T ss_pred cCcccccccccchhccccchHHHHHHHHHHHHHHHHHhcCCCcCceEEEeccHHHHHHHHHHHc-CcccCEEEEECCccc
Confidence 0010 0111 12234556666667899999999999999999988776 567888888887653
Q ss_pred hhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCC--------CCCCCcHHHH
Q 003363 708 LALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ--------DLRVPVSNGL 779 (826)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~--------D~~vp~~~~~ 779 (826)
+. ....+...++.........|+++.+|+. |..+++.+.+
T Consensus 177 ~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~ 224 (265)
T d2gzsa1 177 RG--------------------------------YDALLSRVTAVEPLQFCTKHLAIMEGSATQGDNRETHAVGVLSKIH 224 (265)
T ss_dssp TT--------------------------------HHHHHHHHHTSCTTTTTTCEEEEEECCC-----------CHHHHHH
T ss_pred cc--------------------------------chhhhhccccccccccCCCcEEEEcCCcccccccccccchhHHHHH
Confidence 21 1122222334444555667888888877 6778899999
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCCCC
Q 003363 780 QYARALREKGVETKVIVFPNDVHGI 804 (826)
Q Consensus 780 ~~~~~l~~~g~~~~~~~~p~~~H~~ 804 (826)
+++++|+++|+++++.+|||++|+.
T Consensus 225 ~l~~~L~~~g~~~~~~~~pG~~Hg~ 249 (265)
T d2gzsa1 225 TTLTILKDKGVNAVFWDFPNLGHGP 249 (265)
T ss_dssp HHHHHHHHTTCCEEEEECTTCCHHH
T ss_pred HHHHHHHHCCCCEEEEEcCCCCcch
Confidence 9999999999999999999999964
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Probab=99.69 E-value=4.8e-16 Score=157.47 Aligned_cols=191 Identities=11% Similarity=-0.054 Sum_probs=126.9
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc----cch-HHHHHHHHCC----cEEEEECCCCCCCCchhhhh
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS----SYS-KSLAFLSSVG----YSLLIVNYRGSLGFGEEALQ 641 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~----~~~-~~~~~la~~G----~~Vl~~d~rG~~g~G~~~~~ 641 (826)
-+|.++++++|+|+++++++++|+||++||++...... ... .....+...+ +.+...+.......
T Consensus 31 ~~g~~~~~~v~lP~~y~~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 104 (255)
T d1jjfa_ 31 ATNSTRPARVYLPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPNTNAAGPG------ 104 (255)
T ss_dssp TTTEEEEEEEEECTTCCTTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEECCCCCCTT------
T ss_pred CCCCEEEEEEEeCCCCCCCCCCcEEEEEecCCCChHHhhhhhHHHHHHHHHHHhhccCCcceeeeccccccccc------
Confidence 35788999999999998899999999999976543221 111 1223333333 34444443332111
Q ss_pred cCCCCCCc-chHHHHHHHHHHHHHc--CCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCC
Q 003363 642 SLPGKVGS-QDVNDVLTAIDHVIDM--GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIP 718 (826)
Q Consensus 642 ~~~~~~~~-~~~~D~~~~i~~l~~~--~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~ 718 (826)
...... .....+.+.+.++.++ ..+|+++++++|+|+||++++.++.++|++|+++++.+|..+....
T Consensus 105 --~~~~~~~~~~~~~~~li~~i~~~~~~~~d~~~i~i~G~S~GG~~a~~~a~~~Pd~F~~v~~~sg~~~~~~~------- 175 (255)
T d1jjfa_ 105 --IADGYENFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAPNTYPN------- 175 (255)
T ss_dssp --CSCHHHHHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESCCTTSCCH-------
T ss_pred --ccccccchHHHHHHHHHHHHHHhhccccccceeEeeeccchhHHHHHHHHhCCCcccEEEEEccCcCCccc-------
Confidence 001111 1122333444555553 3378899999999999999999999999999999998886532110
Q ss_pred CchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeC
Q 003363 719 DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 798 (826)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p 798 (826)
.. ....+.....+...|++|.||+.|..++ ..++++++|+++|+++++..++
T Consensus 176 ----~~----------------------~~~~~~~~~~~~~~~~~i~~G~~D~~~~--~~~~~~~~L~~~g~~~~~~~~~ 227 (255)
T d1jjfa_ 176 ----ER----------------------LFPDGGKAAREKLKLLFIACGTNDSLIG--FGQRVHEYCVANNINHVYWLIQ 227 (255)
T ss_dssp ----HH----------------------HCTTTTHHHHHHCSEEEEEEETTCTTHH--HHHHHHHHHHHTTCCCEEEEET
T ss_pred ----cc----------------------ccccHHHHhhccCCcceEEeCCCCCCch--HHHHHHHHHHHCCCCEEEEEEC
Confidence 00 0001111122345799999999999875 5678999999999999999999
Q ss_pred CCCCCC
Q 003363 799 NDVHGI 804 (826)
Q Consensus 799 ~~~H~~ 804 (826)
+++|.+
T Consensus 228 ~ggH~~ 233 (255)
T d1jjfa_ 228 GGGHDF 233 (255)
T ss_dssp TCCSSH
T ss_pred CCCcCH
Confidence 999975
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Probab=99.68 E-value=1.1e-17 Score=168.81 Aligned_cols=215 Identities=12% Similarity=0.028 Sum_probs=135.2
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCc----EEEEECCCCCCCCchhhhhcCCCC
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY----SLLIVNYRGSLGFGEEALQSLPGK 646 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~----~Vl~~d~rG~~g~G~~~~~~~~~~ 646 (826)
..|.+++.++|.|.+++ .+++|+||++||++..... .....+..+.+.|+ +++.++... +........
T Consensus 24 ~lg~~~~~~v~~P~~~~-~~~~Pvvv~lhG~~~~~~~-~~~~~l~~l~~~~~~~~~i~v~~~~~~----~~~~~~~~~-- 95 (246)
T d3c8da2 24 RLKNSRRVWIFTTGDVT-AEERPLAVLLDGEFWAQSM-PVWPVLTSLTHRQQLPPAVYVLIDAID----TTHRAHELP-- 95 (246)
T ss_dssp TTTEEEEEEEEEC------CCCCEEEESSHHHHHHTS-CCHHHHHHHHHTTSSCSCEEEEECCCS----HHHHHHHSS--
T ss_pred CCCCEEEEEEEECCCCC-CCCCCEEEEeCCcchhccC-cHHHHHHHHHHhCCCCceEEeeccccc----ccccccccC--
Confidence 34778999999999875 4679999999997643222 23345566666663 444454332 111111111
Q ss_pred CCcchHHHHH-HHHHHHHHc--CCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhh
Q 003363 647 VGSQDVNDVL-TAIDHVIDM--GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYV 723 (826)
Q Consensus 647 ~~~~~~~D~~-~~i~~l~~~--~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~ 723 (826)
....-...+. +.+.++.+. ..+|+++++|+|+|+||+++++++.++|++|.++++.+|..++......
T Consensus 96 ~~~~~~~~~~~el~~~v~~~~~~~~d~~~~~i~G~S~GG~~al~~~~~~P~~F~a~~~~sg~~~~~~~~~~--------- 166 (246)
T d3c8da2 96 CNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRGGQ--------- 166 (246)
T ss_dssp SCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESCCTTTTCTTSS---------
T ss_pred ccHHHHHHHHHHhhhHHHHhcccccCccceEEEecCchhHHHhhhhccCCchhcEEEcCCcccccccCCcc---------
Confidence 1111112222 222233332 3378899999999999999999999999999999999997654321000
Q ss_pred hhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCC
Q 003363 724 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803 (826)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~ 803 (826)
.. ..+....+.....+...|+++.+|+.|..+ ..++++++++|+++|+++++.++|| ||.
T Consensus 167 -------------~~-----~~~~~~~~~~~~~~~~~~~~l~~G~~D~~~-~~~~~~l~~~L~~~g~~~~~~~~~G-gH~ 226 (246)
T d3c8da2 167 -------------QE-----GVLLEKLKAGEVSAEGLRIVLEAGIREPMI-MRANQALYAQLHPIKESIFWRQVDG-GHD 226 (246)
T ss_dssp -------------SC-----CHHHHHHHTTSSCCCSCEEEEEEESSCHHH-HHHHHHHHHHTGGGTTSEEEEEESC-CSC
T ss_pred -------------ch-----HHHHHHhhhhhhhccCCCeEEEecCCCcch-hHHHHHHHHHHHHCCCCEEEEEeCC-CCC
Confidence 00 112222345566677899999999999876 4788999999999999999999998 796
Q ss_pred CCCCCCHHHHHHHHHHHHHHHc
Q 003363 804 IERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 804 ~~~~~~~~~~~~~i~~w~~~~l 825 (826)
+. ...+.+...+.||-+.|
T Consensus 227 ~~---~W~~~l~~~l~~l~~~~ 245 (246)
T d3c8da2 227 AL---CWRGGLMQGLIDLWQPL 245 (246)
T ss_dssp HH---HHHHHHHHHHHHHHGGG
T ss_pred hH---HHHHHHHHHHHHHHHhh
Confidence 53 12234444555554443
|
| >d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas campestris, pv. citri [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline iminopeptidase species: Xanthomonas campestris, pv. citri [TaxId: 339]
Probab=99.68 E-value=5.1e-16 Score=162.40 Aligned_cols=228 Identities=14% Similarity=0.178 Sum_probs=136.5
Q ss_pred ccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
..+||..++...+-. .+.|.||++||+++... .|... ..+...||.|+++|.|| +|.+.. +....
T Consensus 17 ~~~dg~~i~y~~~G~------~~g~pvvllHG~~g~~~--~~~~~-~~~l~~~~~Vi~~D~rG---~G~S~~---~~~~~ 81 (313)
T d1azwa_ 17 KVDDRHTLYFEQCGN------PHGKPVVMLHGGPGGGC--NDKMR-RFHDPAKYRIVLFDQRG---SGRSTP---HADLV 81 (313)
T ss_dssp ECSSSCEEEEEEEEC------TTSEEEEEECSTTTTCC--CGGGG-GGSCTTTEEEEEECCTT---STTSBS---TTCCT
T ss_pred EeCCCcEEEEEEecC------CCCCEEEEECCCCCCcc--chHHH-hHHhhcCCEEEEEeccc---cCCCCc---ccccc
Confidence 345677777665532 23467889999876532 33322 23346799999999999 554432 12223
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh-----------------
Q 003363 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM----------------- 711 (826)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~----------------- 711 (826)
...+.++.+.+..++++ +..+++.|+|||+||.+++.++.++|++++++++.++.......
T Consensus 82 ~~~~~~~~~dl~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (313)
T d1azwa_ 82 DNTTWDLVADIERLRTH--LGVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIFLLRRFELEWFYQEGASRLFPDAW 159 (313)
T ss_dssp TCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCHHHHHHHHTSSHHHHCHHHH
T ss_pred chhHHHHHHHHHHHHHh--hccccceeEEecCCcHHHHHHHHHhhhceeeeeEeccccccccchhhhhhcccchhhhHHH
Confidence 33466777777777776 44578999999999999999999999999999988875432110
Q ss_pred ---ccCCCCCCch--hh---hhccC-----------------cCCccCCCCCChhhHHH----------------Hh---
Q 003363 712 ---VGTTDIPDWC--YV---ESYGS-----------------KGKDSFTESPSVEDLTR----------------FH--- 747 (826)
Q Consensus 712 ---~~~~~~~~~~--~~---~~~~~-----------------~~~~~~~~~~~~~~~~~----------------~~--- 747 (826)
........+. .. ..+.. .....+. ........ +.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (313)
T d1azwa_ 160 EHYLNAIPPVERADLMSAFHRRLTSDDEATRLAAAKAWSVWEGATSFLH--VDEDFVTGHEDAHFALAFARIENHYFVNG 237 (313)
T ss_dssp HHHHHTSCGGGTTSHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHTSSSS--CCHHHHHHHTCHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHhhhhhhhhhhhhhhhhhhcCccHHHHHHHHHhhhhccccccccc--cchhhhcccchhHHHHHHhHHHHHHHhhc
Confidence 0000000000 00 00000 0000000 00000000 00
Q ss_pred -hc--Cc---ccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 003363 748 -SK--SP---ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 748 -~~--sp---~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~ 821 (826)
.. .+ ......+++|+|+++|+.|..+|++.+..+.+.+.+ .++++++++||....+ +...++++.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~p~~~~~~l~~~~p~----a~~~~i~~aGH~~~ep----~~~~~li~a~ 309 (313)
T d1azwa_ 238 GFFEVEDQLLRDAHRIADIPGVIVHGRYDVVCPLQSAWDLHKAWPK----AQLQISPASGHSAFEP----ENVDALVRAT 309 (313)
T ss_dssp GGCSSTTHHHHTGGGGTTCCEEEEEETTCSSSCHHHHHHHHHHCTT----SEEEEETTCCSSTTSH----HHHHHHHHHH
T ss_pred cccccchhhhHhhhhcCCCCEEEEEECCCCCCCHHHHHHHHHHCCC----CEEEEECCCCCCCCCc----hHHHHHHHHH
Confidence 00 00 012345779999999999999999999998888765 6899999999976422 4455555555
Q ss_pred HH
Q 003363 822 KK 823 (826)
Q Consensus 822 ~~ 823 (826)
++
T Consensus 310 ~~ 311 (313)
T d1azwa_ 310 DG 311 (313)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Biotin biosynthesis protein BioH domain: Biotin biosynthesis protein BioH species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=3.5e-17 Score=165.69 Aligned_cols=209 Identities=17% Similarity=0.177 Sum_probs=128.4
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.|.||++||.+.. ...|...+..|+ .||.|+++|+||. |.+. ......+.|+.+.+. .. ..+
T Consensus 11 ~~~lvllHG~~~~--~~~~~~~~~~L~-~~~~vi~~D~~G~---G~S~------~~~~~~~~d~~~~~~---~~---~~~ 72 (256)
T d1m33a_ 11 NVHLVLLHGWGLN--AEVWRCIDEELS-SHFTLHLVDLPGF---GRSR------GFGALSLADMAEAVL---QQ---APD 72 (256)
T ss_dssp SSEEEEECCTTCC--GGGGGGTHHHHH-TTSEEEEECCTTS---TTCC------SCCCCCHHHHHHHHH---TT---SCS
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHh-CCCEEEEEeCCCC---CCcc------ccccccccccccccc---cc---ccc
Confidence 3668889997654 456777888886 5899999999994 4432 122334555544333 32 247
Q ss_pred cEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCch---hhhhcc-------Cc--CCccCC----
Q 003363 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC---YVESYG-------SK--GKDSFT---- 735 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~---~~~~~~-------~~--~~~~~~---- 735 (826)
++.++|||+||.+++.++.++|+.++++++.++................. +..... .. ......
T Consensus 73 ~~~l~GhS~Gg~ia~~~a~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (256)
T d1m33a_ 73 KAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGTETA 152 (256)
T ss_dssp SEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSTTH
T ss_pred ceeeeecccchHHHHHHHHhCCcccceeeeeecccccccchhhhhhHHHHHHHHHhhhhhhhHHHHHHHhhhhhccccch
Confidence 89999999999999999999999999988876532111000000000000 000000 00 000000
Q ss_pred --------------CCCChhh----HHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEe
Q 003363 736 --------------ESPSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 797 (826)
Q Consensus 736 --------------~~~~~~~----~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 797 (826)
....... ...+...+....+.++++|+|+++|++|..+|++.+..+.+.++ +.+++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~p~~~~~~l~~~~~----~~~~~~i 228 (256)
T d1m33a_ 153 RQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWP----HSESYIF 228 (256)
T ss_dssp HHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGGCCSCEEEEEETTCSSSCGGGCC-CTTTCT----TCEEEEE
T ss_pred hhHHHHHHHhhhhcchhhHHHHHhhhhhhcccchHHHHHhccCCccccccccCCCCCHHHHHHHHHHCC----CCEEEEE
Confidence 0000010 11112233445677899999999999999999988776665554 4789999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 798 PNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 798 p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+++||.+... ...++.+.+.+|+++
T Consensus 229 ~~~gH~~~~e-~p~~~~~~l~~fl~~ 253 (256)
T d1m33a_ 229 AKAAHAPFIS-HPAEFCHLLVALKQR 253 (256)
T ss_dssp TTCCSCHHHH-SHHHHHHHHHHHHTT
T ss_pred CCCCCchHHH-CHHHHHHHHHHHHHH
Confidence 9999976533 445888889999875
|
| >d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp. [TaxId: 51671]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Gamma-lactamase species: Aureobacterium sp. [TaxId: 51671]
Probab=99.67 E-value=9.7e-17 Score=164.29 Aligned_cols=214 Identities=18% Similarity=0.262 Sum_probs=127.2
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.|.||++||.+.+ ...|...+..|.++||.|+++|+||.+. +.. ......++++...+..+++. ++.+
T Consensus 23 g~~illlHG~~~~--~~~~~~~~~~l~~~~~~vi~~D~~G~G~---S~~-----~~~~~~~~~~~~di~~~i~~--l~~~ 90 (279)
T d1hkha_ 23 GQPVVLIHGYPLD--GHSWERQTRELLAQGYRVITYDRRGFGG---SSK-----VNTGYDYDTFAADLHTVLET--LDLR 90 (279)
T ss_dssp SEEEEEECCTTCC--GGGGHHHHHHHHHTTEEEEEECCTTSTT---SCC-----CSSCCSHHHHHHHHHHHHHH--HTCC
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEechhhCC---ccc-----cccccchhhhhhhhhhhhhh--cCcC
Confidence 4779999997765 5578888888889999999999999544 321 11123455555555555554 3457
Q ss_pred cEEEEEecchH-HHHHHHHHhCCCceeEEEecCCccchhhhccCCCC--CC----------------ch--hhhhccCcC
Q 003363 672 KVTVVGGSHGG-FLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI--PD----------------WC--YVESYGSKG 730 (826)
Q Consensus 672 rv~l~G~S~GG-~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~--~~----------------~~--~~~~~~~~~ 730 (826)
++.|+|||+|| .++..++..+|++++++++.++............. .. |. ....+.. .
T Consensus 91 ~~~lvGhS~Gg~~~a~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 169 (279)
T d1hkha_ 91 DVVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDNPEGVPQEVFDGIEAAAKGDRFAWFTDFYKNFYN-L 169 (279)
T ss_dssp SEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHT-H
T ss_pred ccccccccccccchhhhhccccccccceeEEeeccCCccccchhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcc-c
Confidence 89999999996 55566677789999999988764322110000000 00 00 0000000 0
Q ss_pred CccCCCCCChhhHHH----Hhhc-----------------CcccccCCCCCcEEEEEeCCCCCCCcHH-HHHHHHHHHhC
Q 003363 731 KDSFTESPSVEDLTR----FHSK-----------------SPISHISKVKTPTIFLLGAQDLRVPVSN-GLQYARALREK 788 (826)
Q Consensus 731 ~~~~~~~~~~~~~~~----~~~~-----------------sp~~~~~~i~~PvLii~G~~D~~vp~~~-~~~~~~~l~~~ 788 (826)
..........+.... .... +.+..+.++++|+|+++|++|..+|.+. .+.+.+.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~p-- 247 (279)
T d1hkha_ 170 DENLGSRISEQAVTGSWNVAIGSAPVAAYAVVPAWIEDFRSDVEAVRAAGKPTLILHGTKDNILPIDATARRFHQAVP-- 247 (279)
T ss_dssp HHHBTTTBCHHHHHHHHHHHHTSCTTHHHHTHHHHTCBCHHHHHHHHHHCCCEEEEEETTCSSSCTTTTHHHHHHHCT--
T ss_pred chhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhhhcccccchhhhcccCCceEEEEcCCCCccCHHHHHHHHHHhCC--
Confidence 000000001110000 0000 0112345568999999999999998754 444444443
Q ss_pred CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 789 GVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 789 g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
.++++++|++||.+... ...++...|.+||+|
T Consensus 248 --~~~~~~i~~~gH~~~~e-~p~~v~~~i~~fl~k 279 (279)
T d1hkha_ 248 --EADYVEVEGAPHGLLWT-HADEVNAALKTFLAK 279 (279)
T ss_dssp --TSEEEEETTCCTTHHHH-THHHHHHHHHHHHHC
T ss_pred --CCEEEEECCCCCchHHh-CHHHHHHHHHHHHCc
Confidence 36889999999976544 345788899999875
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=2.6e-15 Score=165.32 Aligned_cols=312 Identities=11% Similarity=0.036 Sum_probs=180.9
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCC----
Q 003363 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN---- 176 (826)
Q Consensus 101 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~---- 176 (826)
.+.|.+|++.+ |. . ....++++++.+.. +...++...+. .-......+||||++|+|..+..+
T Consensus 21 ~~~W~~~~~~~-~~--~-------~~g~i~~~~~~~~~-~~~l~~~~~~~--~~~~~~~~~SpD~~~vl~~~~~~~~~r~ 87 (465)
T d1xfda1 21 EAKWISDTEFI-YR--E-------QKGTVRLWNVETNT-STVLIEGKKIE--SLRAIRYEISPDREYALFSYNVEPIYQH 87 (465)
T ss_dssp CCCBSSSSCBC-CC--C-------SSSCEEEBCGGGCC-CEEEECTTTTT--TTTCSEEEECTTSSEEEEEESCCCCSSS
T ss_pred CCEEeCCCcEE-EE--e-------CCCcEEEEECCCCC-EEEEEcCcccc--ccccceeEECCCCCeEEEEEcccceeEe
Confidence 44567787654 32 1 12246676654332 22222222221 124667889999999999876432
Q ss_pred -CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCC
Q 003363 177 -ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWK 254 (826)
Q Consensus 177 -~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (826)
....++..+ ..+...++.... ...+.+ ..+.|||||++|||+.
T Consensus 88 s~~~~~~i~d~~~~~~~~l~~~~-~~~~~l------~~~~wSPDG~~iafv~---------------------------- 132 (465)
T d1xfda1 88 SYTGYYVLSKIPHGDPQSLDPPE-VSNAKL------QYAGWGPKGQQLIFIF---------------------------- 132 (465)
T ss_dssp CCCSEEEEEESSSCCCEECCCTT-CCSCCC------SBCCBCSSTTCEEEEE----------------------------
T ss_pred eccccEEEEEccCCceeeccCcc-CCcccc------ceeeeccCCceEEEEe----------------------------
Confidence 223556555 455555554322 222222 5689999999999983
Q ss_pred CcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCC---C---------------ccceEEEeeCCCCCccEEEEE
Q 003363 255 GQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS---L---------------SVGQVVWAPLNEGLHQYLVFV 316 (826)
Q Consensus 255 ~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~---~---------------~~~~~~wSPDg~~~~~~lvf~ 316 (826)
..+||+.+..+++..+++ ..+. . ....+.|||||++ |+|.
T Consensus 133 -----------------~~nl~~~~~~~~~~~~lt-~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~----iaf~ 190 (465)
T d1xfda1 133 -----------------ENNIYYCAHVGKQAIRVV-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTR----LAYA 190 (465)
T ss_dssp -----------------TTEEEEESSSSSCCEEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSE----EEEE
T ss_pred -----------------cceEEEEecCCCceEEEe-cccCcceeeccccchhhhhhhccccceEEECCCCCe----EEEE
Confidence 367999998888877774 1111 0 1135679999999 9997
Q ss_pred eecCc-cee--------------eeeeeec----cCCCceEEEEcccccchhhhhhhhcCCCCCCcceecC--CC-----
Q 003363 317 GWSSE-TRK--------------LGIKYCY----NRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT--ES----- 370 (826)
Q Consensus 317 ~~~~~-~~~--------------~g~~~~~----~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt--~~----- 370 (826)
..... ... ..+.|.. +....|+++|+ +++....+. ..
T Consensus 191 ~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~-----------------~~~~~~~~~~~~~~~~~~ 253 (465)
T d1xfda1 191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL-----------------NGPTHDLEMMPPDDPRMR 253 (465)
T ss_dssp EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES-----------------SSSCCCEECCCCCCGGGS
T ss_pred EecccccceeecccccccccceeeeeeccccCCCCCceeEEEEec-----------------CCCcEEEEEeccCcCccc
Confidence 63322 111 1111111 11235778887 444332221 11
Q ss_pred CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccC-CCCCC
Q 003363 371 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS-SILSN 449 (826)
Q Consensus 371 ~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~-~~~~~ 449 (826)
......+.|+|||+.+++..++. +....|+++|..++..+.+..... +. |-. ....+
T Consensus 254 ~~y~~~~~W~~d~~~~~~~~nR~-------q~~~~i~~~d~~tg~~~~~~~e~~----------~~-----wv~~~~~~p 311 (465)
T d1xfda1 254 EYYITMVKWATSTKVAVTWLNRA-------QNVSILTLCDATTGVCTKKHEDES----------EA-----WLHRQNEEP 311 (465)
T ss_dssp SEEEEEEEESSSSEEEEEEEETT-------SCEEEEEEEETTTCCEEEEEEEEC----------SS-----CCCCCCCCC
T ss_pred cceeeeeEEcCCCeEEEEEEccc-------cccceEEEEcCCCCcEEEEEEEcC----------Cc-----eEeccCCce
Confidence 12345678999998666666654 345679999998876543322111 00 110 12367
Q ss_pred ccccCCCEEEEEE--EeCCeEEEEEEEC-------CCCcEEEecCCCCCeee-EEEeecCCEEEEEEeCCCCCCe--EEE
Q 003363 450 PWLSDGCTMLLSS--IWGSSQVIISVNV-------SSGELLRITPAESNFSW-SLLTLDGDNIIAVSSSPVDVPQ--VKY 517 (826)
Q Consensus 450 ~ws~Dg~~l~~~~--~~~~~~~l~~vdl-------~tg~~~~lt~~~~~~~~-~~~s~dg~~l~~~~s~~~~p~~--l~~ 517 (826)
.|++||+.++|.. ..++..++|.+.+ .++..++||.+...+.. ..++.+++.|+|.+.. ..|.+ ||.
T Consensus 312 ~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~-~~p~~~hly~ 390 (465)
T d1xfda1 312 VFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTE-DLPRRRQLYS 390 (465)
T ss_dssp EECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESS-SCTTCCEEEE
T ss_pred eEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeC-CCCCceEEEE
Confidence 8999999877653 3445667776643 45667889988776544 3578888999988753 44554 566
Q ss_pred Eeecc
Q 003363 518 GYFVD 522 (826)
Q Consensus 518 ~~~~~ 522 (826)
+++.+
T Consensus 391 v~l~g 395 (465)
T d1xfda1 391 ANTVG 395 (465)
T ss_dssp ECSST
T ss_pred EECCC
Confidence 65543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.65 E-value=5.4e-15 Score=164.00 Aligned_cols=320 Identities=12% Similarity=0.036 Sum_probs=179.9
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccc-eeecCCcceecccEEEEeCCCCCeEEEEecCCC---
Q 003363 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVT-FQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN--- 176 (826)
Q Consensus 101 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~-lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~--- 176 (826)
.+.|++||+.+ |. . ...++++++.++ +... +....|......+..++|||||++|||.++...
T Consensus 21 ~~~W~~d~~~~-~~--~--------~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r 87 (470)
T d2bgra1 21 SLRWISDHEYL-YK--Q--------ENNILVFNAEYG--NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWR 87 (470)
T ss_dssp CCEECSSSEEE-EE--S--------SSCEEEEETTTC--CEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSS
T ss_pred CCEeCCCCEEE-EE--c--------CCcEEEEECCCC--CEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceee
Confidence 34467888755 32 1 123566665332 3222 222233222245789999999999999875321
Q ss_pred --CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCC
Q 003363 177 --ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSW 253 (826)
Q Consensus 177 --~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (826)
....+++.+ .+++..+++..+... ..++|||||++|||+.
T Consensus 88 ~s~~~~~~l~d~~~~~~~~l~~~~~~~----------~~~~~SPDG~~ia~~~--------------------------- 130 (470)
T d2bgra1 88 HSYTASYDIYDLNKRQLITEERIPNNT----------QWVTWSPVGHKLAYVW--------------------------- 130 (470)
T ss_dssp SCEEEEEEEEETTTTEECCSSCCCTTE----------EEEEECSSTTCEEEEE---------------------------
T ss_pred eccCceEEEEECCCCcccccccCCccc----------cccccccCcceeeEee---------------------------
Confidence 122345444 444444333333232 7899999999999973
Q ss_pred CCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCC-----------------CCccceEEEeeCCCCCccEEEEE
Q 003363 254 KGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-----------------SLSVGQVVWAPLNEGLHQYLVFV 316 (826)
Q Consensus 254 ~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~-----------------~~~~~~~~wSPDg~~~~~~lvf~ 316 (826)
+.+||+++..+|+..+++.... ......+.|||||+. |+|.
T Consensus 131 ------------------~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~----ia~~ 188 (470)
T d2bgra1 131 ------------------NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTF----LAYA 188 (470)
T ss_dssp ------------------TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSE----EEEE
T ss_pred ------------------cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCc----ccee
Confidence 2578999999888777631110 011235789999999 9997
Q ss_pred eecCc-ceeee----------------eee----eccCCCceEEEEcccccchhhhhhhhcCCCCCCcceec--------
Q 003363 317 GWSSE-TRKLG----------------IKY----CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-------- 367 (826)
Q Consensus 317 ~~~~~-~~~~g----------------~~~----~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-------- 367 (826)
..... .+... +.+ ..+....++.+++ .++....+
T Consensus 189 ~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~-----------------~~~~~~~~~~~~~~~~ 251 (470)
T d2bgra1 189 QFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNT-----------------DSLSSVTNATSIQITA 251 (470)
T ss_dssp EEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEG-----------------GGCCSSSCCCEEEECC
T ss_pred EecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEEC-----------------CCcceeeeccccccCC
Confidence 64322 11111 111 1112224566665 22222111
Q ss_pred ----CCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCccccc
Q 003363 368 ----TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 443 (826)
Q Consensus 368 ----t~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~ 443 (826)
.........+.|+++++.+++...+.. ......++.+|..++....+....... . . ...-. ..
T Consensus 252 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~-----~~~~~~~~~~d~~tg~~~~~~~~~~~~-~---~-~~~~i---~~ 318 (470)
T d2bgra1 252 PASMLIGDHYLCDVTWATQERISLQWLRRIQ-----NYSVMDICDYDESSGRWNCLVARQHIE-M---S-TTGWV---GR 318 (470)
T ss_dssp CHHHHTSCEEEEEEEEEETTEEEEEEEESST-----TEEEEEEEEEETTTTEEEECGGGCEEE-E---C-SSSCS---SS
T ss_pred ccccCCCCceEEEEEEcCCCceeEEEeeccC-----CceEEEEEEecCCCCcEEEEEEEeeee-e---e-cccee---ec
Confidence 112233467899999987776665531 012235666666665543332211100 0 0 00000 00
Q ss_pred CCCCCCccccCCCE-EEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCC-CCCCe--EEEEe
Q 003363 444 SSILSNPWLSDGCT-MLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSP-VDVPQ--VKYGY 519 (826)
Q Consensus 444 ~~~~~~~ws~Dg~~-l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~-~~p~~--l~~~~ 519 (826)
.....+.|++++.. +++.+..++..+||.++.++++.++|+.+...+.. .++.+++.++|++... ..|.+ ||.++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~-~~~~d~~~iyf~a~~~~~~p~~~~ly~v~ 397 (470)
T d2bgra1 319 FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIG-IEALTSDYLYYISNEYKGMPGGRNLYKIQ 397 (470)
T ss_dssp SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEEE-EEEECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred ccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCceeeeccCCeeEEE-EEEECCCEEEEEEecCCCCcceEEEEEEE
Confidence 01234566666654 45666677889999999999999999988775543 4788899999887654 34543 77666
Q ss_pred eccc
Q 003363 520 FVDK 523 (826)
Q Consensus 520 ~~~~ 523 (826)
+.+.
T Consensus 398 ~~g~ 401 (470)
T d2bgra1 398 LSDY 401 (470)
T ss_dssp TTCT
T ss_pred CCCC
Confidence 6543
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.65 E-value=3.6e-16 Score=161.54 Aligned_cols=241 Identities=15% Similarity=0.113 Sum_probs=152.9
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH---HHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCC--
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK-- 646 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~-- 646 (826)
.|.++...++.| .+++|+|+++||++.......|.. ..+.+.+.|++|++++..+...++..........
T Consensus 19 ~~r~~~~~v~~p-----~~~~Pvl~llhG~~~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 93 (288)
T d1sfra_ 19 MGRDIKVQFQSG-----GANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYSDWYQPACGKAGC 93 (288)
T ss_dssp TTEEEEEEEECC-----STTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTCTTCBCSSCEEETTEE
T ss_pred CCcEEEEEEeCC-----CCCceEEEEcCCCCCCCcchhhhhhccHHHHHHhCCCEEEEeccCCCCCCccccCcccccccc
Confidence 456677666654 468999999999765543334432 4567788999999999877554433221111000
Q ss_pred C-CcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhh
Q 003363 647 V-GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 725 (826)
Q Consensus 647 ~-~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~ 725 (826)
. ...+..-+.+.+.+|.++..+|++|++|+|+|+||++|+.+++++|++|+++++.+|.++.......... ......
T Consensus 94 ~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~S~GG~~A~~~a~~~pd~f~av~~~Sg~~~~~~~~~~~~~--~~~~~~ 171 (288)
T d1sfra_ 94 QTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQAMGPTLI--GLAMGD 171 (288)
T ss_dssp ECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTTSTTHHHHH--HHHHHH
T ss_pred cchhHHHHHHHHhHHHHHHhcCCCCCceEEEEEccHHHHHHHHHHhccccccEEEEecCcccccccccchhh--hhhhhh
Confidence 0 1112233566778888888899999999999999999999999999999999999998764322100000 000000
Q ss_pred ccCcCCccCCCCCChhhHHHHhhcCcccccCCC---CCcEEEEEeCCCCCCCc--------------HHHHHHHHHHHhC
Q 003363 726 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKV---KTPTIFLLGAQDLRVPV--------------SNGLQYARALREK 788 (826)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i---~~PvLii~G~~D~~vp~--------------~~~~~~~~~l~~~ 788 (826)
.+......+.+... ...+...+|...+.+. ..++++.+|..|..++. .+++++.++|.+.
T Consensus 172 ~~~~~~~~~~g~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~e~~~~~~~~~l~~~l~~~ 248 (288)
T d1sfra_ 172 AGGYKASDMWGPKE---DPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTSNIKFQDAYNAG 248 (288)
T ss_dssp TTSCCHHHHHCSTT---STHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccHhhhcCCcc---hhhhHhcCHHHHHHHhhhcCCeEEEEeCCCCCCCccccccccchhHHHHHHHHHHHHHHHHHC
Confidence 01000000001111 1233445665554432 46899999999987763 5778899999999
Q ss_pred CCCEEEEEeCCC-CCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 789 GVETKVIVFPND-VHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 789 g~~~~~~~~p~~-~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
|++..+..+++. +|.+.. ....+.+.+.|+.+.|
T Consensus 249 g~~~~~~~~~~~G~H~w~~---w~~~l~~~l~~l~~al 283 (288)
T d1sfra_ 249 GGHNGVFDFPDSGTHSWEY---WGAQLNAMKPDLQRAL 283 (288)
T ss_dssp TCCSEEEECCSCCCSSHHH---HHHHHHHTHHHHHHHH
T ss_pred CCCeEEEEECCCCccChhH---HHHHHHHHHHHHHHhc
Confidence 999999998865 597531 1233455667777665
|
| >d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.64 E-value=2.6e-15 Score=147.97 Aligned_cols=191 Identities=16% Similarity=0.171 Sum_probs=123.4
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHC--CcEEEEECCCC-----CCCC-chhhhhcCC-CCCCcchHHHH---HH
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRG-----SLGF-GEEALQSLP-GKVGSQDVNDV---LT 657 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~--G~~Vl~~d~rG-----~~g~-G~~~~~~~~-~~~~~~~~~D~---~~ 657 (826)
...++||++||.+.+ ...+....+.|.+. ++.+++++-+. .+++ +..|..... ........+++ ..
T Consensus 12 ~~~~~Vi~lHG~G~~--~~~~~~~~~~l~~~~~~~~~i~p~ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 89 (218)
T d1auoa_ 12 PADACVIWLHGLGAD--RYDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEELEVSAK 89 (218)
T ss_dssp CCSEEEEEECCTTCC--TTTTHHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEECHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCC--hhhHHHHHHHHHHhCCCcEEEccCCCccccccCCCcccCcccccccccccccchHHHHHHHHH
Confidence 456899999996544 34566667777654 45556554221 0001 111111000 00111222233 33
Q ss_pred HHHHHHH---cCCCCCCcEEEEEecchHHHHHHHHH-hCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCcc
Q 003363 658 AIDHVID---MGLANPSKVTVVGGSHGGFLTTHLIG-QAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDS 733 (826)
Q Consensus 658 ~i~~l~~---~~~~d~~rv~l~G~S~GG~~a~~~a~-~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (826)
.++.+++ +..+|++|++++|+|+||.+++.++. +.+..+.++++.++...... .
T Consensus 90 ~v~~li~~~~~~~i~~~ri~l~GfSqGg~~a~~~~l~~~~~~~~~~v~~~g~~~~~~-----------------~----- 147 (218)
T d1auoa_ 90 MVTDLIEAQKRTGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTFG-----------------D----- 147 (218)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTCC-----------------T-----
T ss_pred HHHHHHHHHHHhCCCCcceEEeeeCcchHHHHHHHHhcccccceeeeeccccCcccc-----------------c-----
Confidence 3333332 34589999999999999999998765 45678899998887432100 0
Q ss_pred CCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHH
Q 003363 734 FTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFES 813 (826)
Q Consensus 734 ~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~ 813 (826)
...... ...++|+|++||++|.+||++.++++++.|++.|.+++++.|+ .+|.+. .+.
T Consensus 148 --~~~~~~--------------~~~~~pvl~~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~-~gH~i~-----~~~ 205 (218)
T d1auoa_ 148 --ELELSA--------------SQQRIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEYP-MGHEVL-----PQE 205 (218)
T ss_dssp --TCCCCH--------------HHHTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEES-CSSSCC-----HHH
T ss_pred --ccccch--------------hccCCCEEEEecCCCCccCHHHHHHHHHHHHHCCCCEEEEEEC-CCCccC-----HHH
Confidence 000000 0125799999999999999999999999999999999999997 679875 356
Q ss_pred HHHHHHHHHHHcC
Q 003363 814 FLNIGLWFKKYCK 826 (826)
Q Consensus 814 ~~~i~~w~~~~l~ 826 (826)
+..+.+||.+.|+
T Consensus 206 ~~~i~~wl~~~lg 218 (218)
T d1auoa_ 206 IHDIGAWLAARLG 218 (218)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 7899999999875
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.62 E-value=4.2e-15 Score=157.65 Aligned_cols=169 Identities=14% Similarity=0.083 Sum_probs=131.2
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
.+||+||+++++++++ .....+..++|||||+. |++++.+.+ ..|+++|+
T Consensus 24 g~v~v~d~~~~~~~~~---~~~~~v~~~~~spDg~~----l~~~~~~~g-------------~~v~v~d~---------- 73 (360)
T d1k32a3 24 GQAFIQDVSGTYVLKV---PEPLRIRYVRRGGDTKV----AFIHGTREG-------------DFLGIYDY---------- 73 (360)
T ss_dssp TEEEEECTTSSBEEEC---SCCSCEEEEEECSSSEE----EEEEEETTE-------------EEEEEEET----------
T ss_pred CeEEEEECCCCcEEEc---cCCCCEEEEEECCCCCE----EEEEEcCCC-------------CEEEEEEC----------
Confidence 5799999999999887 34456789999999999 999884322 25889998
Q ss_pred hhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeec
Q 003363 353 ELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC 432 (826)
Q Consensus 353 ~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 432 (826)
.+++.+++..+...+...+|||||++|++.+.+ ..++.|++.++....+....
T Consensus 74 -------~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~~--------- 126 (360)
T d1k32a3 74 -------RTGKAEKFEENLGNVFAMGVDRNGKFAVVANDR-----------FEIMTVDLETGKPTVIERSR--------- 126 (360)
T ss_dssp -------TTCCEEECCCCCCSEEEEEECTTSSEEEEEETT-----------SEEEEEETTTCCEEEEEECS---------
T ss_pred -------CCCcEEEeeCCCceEEeeeecccccccceeccc-----------cccccccccccceeeeeecc---------
Confidence 888899999988889999999999999988755 45899998776543221110
Q ss_pred cCCCCCcccccCCCCCCccccCCCEEEEEEEeC-------CeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEE
Q 003363 433 AEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAV 505 (826)
Q Consensus 433 ~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~-------~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~ 505 (826)
......++|+|||++|++..... ....++.+|+.+++...++..........+++||+.|++.
T Consensus 127 ----------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 196 (360)
T d1k32a3 127 ----------EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYL 196 (360)
T ss_dssp ----------SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEE
T ss_pred ----------cccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEE
Confidence 11334788999999998876543 3557888999999999988877766667899999998877
Q ss_pred EeC
Q 003363 506 SSS 508 (826)
Q Consensus 506 ~s~ 508 (826)
...
T Consensus 197 s~~ 199 (360)
T d1k32a3 197 SYR 199 (360)
T ss_dssp ESC
T ss_pred eCC
Confidence 644
|
| >d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline aminopeptidase species: Serratia marcescens [TaxId: 615]
Probab=99.61 E-value=2.5e-15 Score=155.53 Aligned_cols=231 Identities=15% Similarity=0.158 Sum_probs=138.2
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCc
Q 003363 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~ 649 (826)
.+||.+++...+-++ ..|.||++||++.+ ...|......| ++||.|+++|+||.+ .+... .....
T Consensus 18 ~~dG~~i~y~~~G~~------~g~pvvllHG~~~~--~~~w~~~~~~l-~~~~~vi~~D~rG~G---~S~~~---~~~~~ 82 (313)
T d1wm1a_ 18 TGDGHRIYWELSGNP------NGKPAVFIHGGPGG--GISPHHRQLFD-PERYKVLLFDQRGCG---RSRPH---ASLDN 82 (313)
T ss_dssp CSSSCEEEEEEEECT------TSEEEEEECCTTTC--CCCGGGGGGSC-TTTEEEEEECCTTST---TCBST---TCCTT
T ss_pred eCCCcEEEEEEecCC------CCCeEEEECCCCCc--ccchHHHHHHh-hcCCEEEEEeCCCcc---ccccc---ccccc
Confidence 457888877666443 23678899998766 34555555444 569999999999954 33211 11222
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh------------------
Q 003363 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM------------------ 711 (826)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~------------------ 711 (826)
....+..+.+..+++. .+..++.++|||+||.++..++..+|++++..++.++.......
T Consensus 83 ~~~~~~~~d~~~~~~~--~~~~~~~~vg~s~g~~~~~~~a~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (313)
T d1wm1a_ 83 NTTWHLVADIERLREM--AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFTLRKQRLHWYYQDGASRFFPEKWE 160 (313)
T ss_dssp CSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCHHHHHHHHTSSGGGTSHHHHH
T ss_pred cchhhHHHHHHhhhhc--cCCCcceeEeeecCCchhhHHHHHHhhhheeeeecccccccccccccccccccchhhhhhhh
Confidence 3355555555555555 35678999999999999999999999999999888764421100
Q ss_pred --ccCCCCC---Cch---hhhhccC----------------cCCccCCCCCC------hhhHHH-------Hhh----cC
Q 003363 712 --VGTTDIP---DWC---YVESYGS----------------KGKDSFTESPS------VEDLTR-------FHS----KS 750 (826)
Q Consensus 712 --~~~~~~~---~~~---~~~~~~~----------------~~~~~~~~~~~------~~~~~~-------~~~----~s 750 (826)
....... .+. ....... ........... ...... ... ..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (313)
T d1wm1a_ 161 RVLSILSDDERKDVIAAYRQRLTSADPQVQLEAAKLWSVWEGETVTLLPSRESASFGEDDFALAFARIENHYFTHLGFLE 240 (313)
T ss_dssp HHHTTSCTTGGGCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTTSSSSCCGGGGGGGCHHHHHHHHHHHHHHHHTGGGCS
T ss_pred hhhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhHHhhhhhhhhhhhhhhcccc
Confidence 0000000 000 0000000 00000000000 000000 000 00
Q ss_pred -----cccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 751 -----PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 751 -----p~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
.......+++|+|+++|++|..+|++.++++.+.+++ +++++++++||.+.. .+...+++++++++.
T Consensus 241 ~~~~~~~~~~~~~~~Pvlii~G~~D~~~p~~~~~~l~~~~p~----a~~~~i~~aGH~~~e----P~~~~~lv~a~~~f~ 312 (313)
T d1wm1a_ 241 SDDQLLRNVPLIRHIPAVIVHGRYDMACQVQNAWDLAKAWPE----AELHIVEGAGHSYDE----PGILHQLMIATDRFA 312 (313)
T ss_dssp STTHHHHTGGGGTTSCEEEEEETTCSSSCHHHHHHHHHHCTT----SEEEEETTCCSSTTS----HHHHHHHHHHHHHHT
T ss_pred cchhhhhhhhhhCCCCEEEEEECCCCccCHHHHHHHHHHCCC----CEEEEECCCCCCcCC----chHHHHHHHHHHHhc
Confidence 0122345789999999999999999999998888865 689999999996532 355667777777764
|
| >d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein VC1974 domain: Hypothetical protein VC1974 species: Vibrio cholerae [TaxId: 666]
Probab=99.57 E-value=5.3e-15 Score=148.67 Aligned_cols=212 Identities=15% Similarity=0.137 Sum_probs=120.1
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCC
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (826)
+...|+||++||.+.+ ...|...+..|++.||.|+++|+||.| .+.... .. ...+...+...+......
T Consensus 13 ~~~~P~ivllHG~~~~--~~~~~~~~~~L~~~g~~vi~~Dl~G~G---~s~~~~---~~---~~~~~~~~~~~~~~~~~~ 81 (264)
T d1r3da_ 13 TARTPLVVLVHGLLGS--GADWQPVLSHLARTQCAALTLDLPGHG---TNPERH---CD---NFAEAVEMIEQTVQAHVT 81 (264)
T ss_dssp BTTBCEEEEECCTTCC--GGGGHHHHHHHTTSSCEEEEECCTTCS---SCC-------------CHHHHHHHHHHHTTCC
T ss_pred CCCCCeEEEeCCCCCC--HHHHHHHHHHHHhCCCEEEEEeccccc---cccccc---cc---ccchhhhhhhhccccccc
Confidence 4566899999997755 567888999999999999999999944 332111 11 111222222222223234
Q ss_pred CCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhc----------------c-CCCCCCchhhhhccCcCC
Q 003363 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV----------------G-TTDIPDWCYVESYGSKGK 731 (826)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~----------------~-~~~~~~~~~~~~~~~~~~ 731 (826)
..+++.++|||+||.+++.++.++|+.+..++...+........ . .............. .
T Consensus 82 ~~~~~~lvGhS~Gg~ia~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 158 (264)
T d1r3da_ 82 SEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHFGLQENEEKAARWQHDQQWAQRFSQQPIEHVLSDWY---Q 158 (264)
T ss_dssp TTSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCCCCCCSHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHT---T
T ss_pred ccCceeeeeecchHHHHHHHHHhCchhccccccccccCCCccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh---h
Confidence 56789999999999999999999998877766543221100000 0 00000000000000 0
Q ss_pred ccCCCCCChhhH---------------HHH-h------hcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCC
Q 003363 732 DSFTESPSVEDL---------------TRF-H------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG 789 (826)
Q Consensus 732 ~~~~~~~~~~~~---------------~~~-~------~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g 789 (826)
............ ... . .......+..+++|+|+++|++|..+ ..+.+. .
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~l~i~G~~D~~~-----~~~~~~-~--- 229 (264)
T d1r3da_ 159 QAVFSSLNHEQRQTLIAQRSANLGSSVAHMLLATSLAKQPYLLPALQALKLPIHYVCGEQDSKF-----QQLAES-S--- 229 (264)
T ss_dssp SGGGTTCCHHHHHHHHHHHTTSCHHHHHHHHHHTCGGGCCCCHHHHHTCSSCEEEEEETTCHHH-----HHHHHH-H---
T ss_pred hhhhcccchHHHHHHHHHHhhhhhhhhHHhhhhccccccccchhhhhccCcceEEEEeCCcHHH-----HHHHhc-C---
Confidence 000000000000 000 0 00112335678899999999999543 222222 2
Q ss_pred CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 790 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 790 ~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
.+++++++++||.+.... ..++.+.|.+||+..+
T Consensus 230 -~~~~~~i~~~gH~~~~e~-P~~~~~~i~~fl~~l~ 263 (264)
T d1r3da_ 230 -GLSYSQVAQAGHNVHHEQ-PQAFAKIVQAMIHSII 263 (264)
T ss_dssp -CSEEEEETTCCSCHHHHC-HHHHHHHHHHHHHHHC
T ss_pred -CCeEEEECCCCCchHHHC-HHHHHHHHHHHHHhcc
Confidence 368899999999866443 4578889999998754
|
| >d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
Probab=99.53 E-value=3e-14 Score=146.14 Aligned_cols=123 Identities=12% Similarity=0.060 Sum_probs=80.9
Q ss_pred eccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCC
Q 003363 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (826)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~ 647 (826)
+.+-+|..+++... ++.|+||++||.+.+ ...|...+..|+ .+|.|+++|+||.+. +.........
T Consensus 12 fi~~~g~~i~y~~~--------G~g~~vvllHG~~~~--~~~~~~~~~~L~-~~~~vi~~Dl~G~G~---S~~~~~~~~~ 77 (298)
T d1mj5a_ 12 FIEIKGRRMAYIDE--------GTGDPILFQHGNPTS--SYLWRNIMPHCA-GLGRLIACDLIGMGD---SDKLDPSGPE 77 (298)
T ss_dssp EEEETTEEEEEEEE--------SCSSEEEEECCTTCC--GGGGTTTGGGGT-TSSEEEEECCTTSTT---SCCCSSCSTT
T ss_pred EEEECCEEEEEEEE--------cCCCcEEEECCCCCC--HHHHHHHHHHHh-cCCEEEEEeCCCCCC---CCCCcccccc
Confidence 33446777765432 124789999997755 456777777775 469999999999543 3221111111
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCcc
Q 003363 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (826)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 706 (826)
.....+..+.+..++... ...+++.++|||+||.+++.++.++|++++++++.++..
T Consensus 78 -~~~~~~~~~~~~~~~~~~-~~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~l~~~~~~~ 134 (298)
T d1mj5a_ 78 -RYAYAEHRDYLDALWEAL-DLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIA 134 (298)
T ss_dssp -SSCHHHHHHHHHHHHHHT-TCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECC
T ss_pred -ccccchhhhhhccccccc-cccccCeEEEecccchhHHHHHHHHHhhhheeecccccc
Confidence 122344444443333322 345789999999999999999999999999988876543
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Probab=99.52 E-value=2e-16 Score=165.53 Aligned_cols=234 Identities=11% Similarity=0.023 Sum_probs=130.3
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-----cchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcc
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-----SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-----~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~ 650 (826)
+...++.|. ..++.| ||++||++.+.... .+...++.++++||.|+++|+||++.++....
T Consensus 46 ~~v~~~~p~---~~~~~P-vvllHG~~~~~~~w~~~~~~~~~~~~~~~~~Gy~V~~~D~~G~G~S~~~~~---------- 111 (318)
T d1qlwa_ 46 MYVRYQIPQ---RAKRYP-ITLIHGCCLTGMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDIS---------- 111 (318)
T ss_dssp EEEEEEEET---TCCSSC-EEEECCTTCCGGGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCH----------
T ss_pred EEEEEECCC---CCCCCc-EEEECCCCCCcCccccCcccchhHHHHHHhCCCEEEEecCCCCCCCCCccc----------
Confidence 344456676 345666 67799988764211 22346889999999999999999766544321
Q ss_pred hHHHHHHHHHHHH---HcCCCCCCcEEEEEecchHHHHHHHHHhCCCce-eEEEecCCccchhhhccCCCCC-C--chhh
Q 003363 651 DVNDVLTAIDHVI---DMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKF-VAAAARNPLCNLALMVGTTDIP-D--WCYV 723 (826)
Q Consensus 651 ~~~D~~~~i~~l~---~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~-~a~v~~~p~~~~~~~~~~~~~~-~--~~~~ 723 (826)
..+.....+++. +.-.....++.++|||+||.++..++....... ...++..+.............. . ....
T Consensus 112 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (318)
T d1qlwa_ 112 -AINAVKLGKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLA 190 (318)
T ss_dssp -HHHHHHTTSSCGGGSCCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhhcCccccceeeEeccccccccchhhhhhhHHHHHHHH
Confidence 111111111111 111123456778899999988777665443211 1111111111100000000000 0 0000
Q ss_pred hhccCcCCccCCCCCChhhHH---------------HHhhcCcccccCCCCCcEEEEEeCCCCCCCc-----HHHHHHHH
Q 003363 724 ESYGSKGKDSFTESPSVEDLT---------------RFHSKSPISHISKVKTPTIFLLGAQDLRVPV-----SNGLQYAR 783 (826)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~-----~~~~~~~~ 783 (826)
..................... ......+...+..+++|+|+++|++|.++|. .++..+++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Lii~G~~D~~~p~~~~~~~~~~~~~~ 270 (318)
T d1qlwa_ 191 IKLDGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGECPKPEDVKPLTSIPVLVVFGDHIEEFPRWAPRLKACHAFID 270 (318)
T ss_dssp HHHTSEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCCCCGGGCGGGTTSCEEEEECSSCTTCTTTHHHHHHHHHHHH
T ss_pred hhhccccchhhhcccchhhhhhhhhhhHHHHHHhhhcccccchhhhhhhccCCEEEEecCcCcccChhhhHHHHHHHHHH
Confidence 000000000000000000000 0011234556677889999999999999994 55667888
Q ss_pred HHHhCCCCEEEEEeC-----CCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 784 ALREKGVETKVIVFP-----NDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 784 ~l~~~g~~~~~~~~p-----~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
.++++|.+++++.+| |++|.+..+.+..++.+.|.+||++|
T Consensus 271 ~l~~~g~~~~~~~lp~~gi~G~gH~~~~e~~~~~va~~i~~wL~~~ 316 (318)
T d1qlwa_ 271 ALNAAGGKGQLMSLPALGVHGNSHMMMQDRNNLQVADLILDWIGRN 316 (318)
T ss_dssp HHHHTTCCEEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcEEEEecccccCCCcCccccCcCHHHHHHHHHHHHHhc
Confidence 999999999999977 56799877777779999999999987
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.52 E-value=2.9e-12 Score=133.26 Aligned_cols=271 Identities=14% Similarity=0.171 Sum_probs=160.6
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003363 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (826)
Q Consensus 103 ~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (826)
+.+|+|+.++|... ..+.++++... .....++... ..+...+|||||++||.....+ .+
T Consensus 24 a~~~~g~~l~~~~~----------~~v~i~~~~~~-~~~~~~~~H~-----~~v~~~~~sp~g~~latg~~dg-----~i 82 (311)
T d1nr0a1 24 GNTPAGDKIQYCNG----------TSVYTVPVGSL-TDTEIYTEHS-----HQTTVAKTSPSGYYCASGDVHG-----NV 82 (311)
T ss_dssp EECTTSSEEEEEET----------TEEEEEETTCS-SCCEEECCCS-----SCEEEEEECTTSSEEEEEETTS-----EE
T ss_pred EEcCCCCEEEEEeC----------CEEEEEECCCC-ceeEEEcCCC-----CCEEEEEEeCCCCeEeccccCc-----eE
Confidence 34899999998621 13555555322 2233444433 4689999999999998765543 46
Q ss_pred EEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceee
Q 003363 183 ELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (826)
Q Consensus 183 ~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (826)
.+|+ .+.......+. ...+.| ..+.|+|||+.|+..+...
T Consensus 83 ~iwd~~~~~~~~~~~~~-~~~~~v------~~v~~s~d~~~l~~~~~~~------------------------------- 124 (311)
T d1nr0a1 83 RIWDTTQTTHILKTTIP-VFSGPV------KDISWDSESKRIAAVGEGR------------------------------- 124 (311)
T ss_dssp EEEESSSTTCCEEEEEE-CSSSCE------EEEEECTTSCEEEEEECCS-------------------------------
T ss_pred eeeeeeccccccccccc-cccCcc------ccccccccccccccccccc-------------------------------
Confidence 6772 22222111111 122233 7899999999998876432
Q ss_pred cCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEE
Q 003363 261 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 340 (826)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~ 340 (826)
...+.+|+.++++..... ......+..++|+|||+. ++.++. .+..|+++
T Consensus 125 -----------~~~~~v~~~~~~~~~~~l-~~h~~~v~~v~~~~~~~~----~l~sgs--------------~d~~i~i~ 174 (311)
T d1nr0a1 125 -----------ERFGHVFLFDTGTSNGNL-TGQARAMNSVDFKPSRPF----RIISGS--------------DDNTVAIF 174 (311)
T ss_dssp -----------SCSEEEEETTTCCBCBCC-CCCSSCEEEEEECSSSSC----EEEEEE--------------TTSCEEEE
T ss_pred -----------cccccccccccccccccc-ccccccccccccccccee----eecccc--------------cccccccc
Confidence 234677888877654331 223345778999999997 665552 23368888
Q ss_pred EcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCc
Q 003363 341 RVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 419 (826)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~ 419 (826)
|+ .+++ ...+..+...+....|+|||+.|+..+.+ ..+.+||+.++.....
T Consensus 175 d~-----------------~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d-----------~~v~~~d~~~~~~~~~ 226 (311)
T d1nr0a1 175 EG-----------------PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD-----------GTIVLYNGVDGTKTGV 226 (311)
T ss_dssp ET-----------------TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTCCEEEE
T ss_pred cc-----------------cccccccccccccccccccccCcccccccccccc-----------cccccccccccccccc
Confidence 88 4444 34445556678889999999998876654 3488898877543211
Q ss_pred ccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC--CeeeEEEee
Q 003363 420 LEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTL 497 (826)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~--~~~~~~~s~ 497 (826)
. ... .....| +...+..++|+|||+.|+ +...++ .|..+|+.+++..+...... ......+.+
T Consensus 227 ~----------~~~-~~~~~~-h~~~V~~~~~s~~~~~l~-tgs~Dg--~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~ 291 (311)
T d1nr0a1 227 F----------EDD-SLKNVA-HSGSVFGLTWSPDGTKIA-SASADK--TIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 291 (311)
T ss_dssp C----------BCT-TSSSCS-SSSCEEEEEECTTSSEEE-EEETTS--EEEEEETTTTEEEEEEECCSSGGGCEEEEEE
T ss_pred c----------ccc-cccccc-ccccccccccCCCCCEEE-EEeCCC--eEEEEECCCCcEEEEEECCCCccceEEEEEe
Confidence 0 000 000110 122345778999999665 443344 46667888988665333222 122234555
Q ss_pred cCCEEEEE
Q 003363 498 DGDNIIAV 505 (826)
Q Consensus 498 dg~~l~~~ 505 (826)
+++.++..
T Consensus 292 ~~~~l~s~ 299 (311)
T d1nr0a1 292 TKQALVSI 299 (311)
T ss_dssp CSSCEEEE
T ss_pred cCCEEEEE
Confidence 66655443
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=7.4e-12 Score=131.52 Aligned_cols=273 Identities=11% Similarity=0.062 Sum_probs=166.2
Q ss_pred CccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEE
Q 003363 92 ISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVV 171 (826)
Q Consensus 92 ~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~ 171 (826)
+.....+..+ ||||++|+-- + +..+.+|++..........+.. .......+...+|||||++|+..
T Consensus 50 H~~~V~~v~f---s~~g~~latg-~---------dg~V~iWd~~~~~~~~~~~~~~-~~~h~~~I~~v~~s~dg~~l~s~ 115 (337)
T d1gxra_ 50 HGEVVCAVTI---SNPTRHVYTG-G---------KGCVKVWDISHPGNKSPVSQLD-CLNRDNYIRSCKLLPDGCTLIVG 115 (337)
T ss_dssp CSSCCCEEEE---CSSSSEEEEE-C---------BSEEEEEETTSTTCCSCSEEEE-CSCTTSBEEEEEECTTSSEEEEE
T ss_pred CCCcEEEEEE---CCCCCEEEEE-E---------CCEEEEEEccCCcccceeEEee-ecCCCCcEEEEEEcCCCCEEEEe
Confidence 3444445444 8999887542 1 2346677775433221111111 00011347889999999999877
Q ss_pred ecCCCCCCeEEEEec-C-CceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcc
Q 003363 172 RNPENESPIQFELWS-Q-SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKD 249 (826)
Q Consensus 172 ~~~~~~~~~~~~i~~-~-~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (826)
...+ .+.+|+ . ...+....+. ..... ...+.|+||+..|+..+.+
T Consensus 116 ~~dg-----~i~iwd~~~~~~~~~~~~~-~~~~~------v~~~~~~~~~~~l~s~~~d--------------------- 162 (337)
T d1gxra_ 116 GEAS-----TLSIWDLAAPTPRIKAELT-SSAPA------CYALAISPDSKVCFSCCSD--------------------- 162 (337)
T ss_dssp ESSS-----EEEEEECCCC--EEEEEEE-CSSSC------EEEEEECTTSSEEEEEETT---------------------
T ss_pred eccc-----ccccccccccccccccccc-ccccc------ccccccccccccccccccc---------------------
Confidence 6543 566773 2 2222111211 11111 2578899999988765432
Q ss_pred CCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeee
Q 003363 250 CNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKY 329 (826)
Q Consensus 250 ~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~ 329 (826)
..|.++|+.+++..... ......+..++|+|+++. ++..+
T Consensus 163 -----------------------~~i~~~~~~~~~~~~~~-~~~~~~v~~l~~s~~~~~----~~~~~------------ 202 (337)
T d1gxra_ 163 -----------------------GNIAVWDLHNQTLVRQF-QGHTDGASCIDISNDGTK----LWTGG------------ 202 (337)
T ss_dssp -----------------------SCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSE----EEEEE------------
T ss_pred -----------------------ccccccccccccccccc-cccccccccccccccccc----ccccc------------
Confidence 46888999888766552 223445778899999997 77765
Q ss_pred eccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEE
Q 003363 330 CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 409 (826)
Q Consensus 330 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~ 409 (826)
.+..++.+|+ .+++..........+....|+|+|+.|+..+.+ ..+.++
T Consensus 203 ---~d~~v~i~d~-----------------~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-----------~~i~i~ 251 (337)
T d1gxra_ 203 ---LDNTVRSWDL-----------------REGRQLQQHDFTSQIFSLGYCPTGEWLAVGMES-----------SNVEVL 251 (337)
T ss_dssp ---TTSEEEEEET-----------------TTTEEEEEEECSSCEEEEEECTTSSEEEEEETT-----------SCEEEE
T ss_pred ---cccccccccc-----------------ccceeecccccccceEEEEEcccccccceeccc-----------cccccc
Confidence 2346888887 445443333445567788999999998765543 358889
Q ss_pred eCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCC
Q 003363 410 DWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESN 489 (826)
Q Consensus 410 d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~ 489 (826)
|+.++....... +...+..+.|+|||+.|+ +...++ .|..+|+.+++..........
T Consensus 252 d~~~~~~~~~~~--------------------~~~~i~~v~~s~~g~~l~-s~s~Dg--~i~iwd~~~~~~~~~~~~~~~ 308 (337)
T d1gxra_ 252 HVNKPDKYQLHL--------------------HESCVLSLKFAYCGKWFV-STGKDN--LLNAWRTPYGASIFQSKESSS 308 (337)
T ss_dssp ETTSSCEEEECC--------------------CSSCEEEEEECTTSSEEE-EEETTS--EEEEEETTTCCEEEEEECSSC
T ss_pred cccccccccccc--------------------cccccceEEECCCCCEEE-EEeCCC--eEEEEECCCCCEEEEccCCCC
Confidence 987755321110 112344678999999664 444344 466668888887766655555
Q ss_pred eeeEEEeecCCEEEEE
Q 003363 490 FSWSLLTLDGDNIIAV 505 (826)
Q Consensus 490 ~~~~~~s~dg~~l~~~ 505 (826)
+....|+++++.|+..
T Consensus 309 v~~~~~s~d~~~l~t~ 324 (337)
T d1gxra_ 309 VLSCDISVDDKYIVTG 324 (337)
T ss_dssp EEEEEECTTSCEEEEE
T ss_pred EEEEEEeCCCCEEEEE
Confidence 6667889988876543
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Probab=99.46 E-value=5.4e-14 Score=143.54 Aligned_cols=193 Identities=12% Similarity=0.001 Sum_probs=116.5
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-----cchHHHHHHH----HCCcEEEEECCCCCCCCchhhhhcCCC
Q 003363 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-----SYSKSLAFLS----SVGYSLLIVNYRGSLGFGEEALQSLPG 645 (826)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-----~~~~~~~~la----~~G~~Vl~~d~rG~~g~G~~~~~~~~~ 645 (826)
+...++|+|+++++++++|+|+++||+++..... ........+. ...+.|+.+++++..+.+..+....
T Consensus 38 ~r~~~vylP~~y~~~k~yPvl~~lhG~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-- 115 (273)
T d1wb4a1 38 TKSLNVYLPYGYDPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNGGNCTAQNFYQEF-- 115 (273)
T ss_dssp EEEEEEEECTTCCTTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHHTSSCCEEEEECCSCSTTCCTTTHHHHH--
T ss_pred eEEEEEEeCCCCCCCCCceEEEEEeCCCCCcchhhhhccchhHHHHhhhhhhccCCceeeccccCCCCCccccchhcc--
Confidence 5688999999998889999999999987543211 1112222222 2468899999887655443321111
Q ss_pred CCCcchHHHHHHHH---------HHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCC
Q 003363 646 KVGSQDVNDVLTAI---------DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD 716 (826)
Q Consensus 646 ~~~~~~~~D~~~~i---------~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~ 716 (826)
..++...+ +.+.....+|+++++|+|+|+||++++.++.++||+|+++++.+|.........
T Consensus 116 ------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~G~S~GG~~a~~~a~~~pd~f~a~~~~sg~~~~~~~~~--- 186 (273)
T d1wb4a1 116 ------RQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDYWYGNSPQ--- 186 (273)
T ss_dssp ------HHTHHHHHHHHSCCSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEEEEESCCCCBSSSHH---
T ss_pred ------cccccchhhhhhhhhhhhhhhhcccCCccceEEEeeCCcchhhhhhhhcCCCcceEEEEeCcccccCCCcc---
Confidence 11111111 112222337899999999999999999999999999999999998653211100
Q ss_pred CCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHH----------
Q 003363 717 IPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALR---------- 786 (826)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~---------- 786 (826)
... ........ .........++++..|+.|..+ .......+.+.
T Consensus 187 -------~~~-------------~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 240 (273)
T d1wb4a1 187 -------DKA-------------NSIAEAIN----RSGLSKREYFVFAATGSEDIAY--ANMNPQIEAMKALPHFDYTSD 240 (273)
T ss_dssp -------HHH-------------HHHHHHHH----HHTCCTTSCEEEEEEETTCTTH--HHHHHHHHHHHTSTTCCBBSC
T ss_pred -------ccc-------------ccchhhhh----hhhhcccceEEEEecCCCCccc--ccchhHHHHHHHHHHHHHHHH
Confidence 000 00000000 0112233355677777777543 44444444443
Q ss_pred hCCCCEEEEEeCCCCCCC
Q 003363 787 EKGVETKVIVFPNDVHGI 804 (826)
Q Consensus 787 ~~g~~~~~~~~p~~~H~~ 804 (826)
..+..+.+.++++++|.+
T Consensus 241 ~~~~~~~~~~~~~ggH~w 258 (273)
T d1wb4a1 241 FSKGNFYFLVAPGATHWW 258 (273)
T ss_dssp TTTCCEEEEEETTCCSSH
T ss_pred hcCCCEEEEEECCCccCH
Confidence 335688999999999953
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.43 E-value=2.9e-11 Score=123.81 Aligned_cols=243 Identities=15% Similarity=0.100 Sum_probs=154.0
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
.....++||||++|+.....+ + .+..++ ..++..+.+...... ..+.|++||+.++.....
T Consensus 33 ~p~~va~spdG~~l~v~~~~~-~--~i~v~d~~t~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~----- 94 (301)
T d1l0qa2 33 NPMGAVISPDGTKVYVANAHS-N--DVSIIDTATNNVIATVPAGSSP----------QGVAVSPDGKQVYVTNMA----- 94 (301)
T ss_dssp SEEEEEECTTSSEEEEEEGGG-T--EEEEEETTTTEEEEEEECSSSE----------EEEEECTTSSEEEEEETT-----
T ss_pred CceEEEEeCCCCEEEEEECCC-C--EEEEEECCCCceeeeeeccccc----------cccccccccccccccccc-----
Confidence 356789999999997654332 2 343333 344444444443333 588999999988875432
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (826)
...+.+++..+++.... ...........|+|||+. +
T Consensus 95 --------------------------------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~dg~~----~ 130 (301)
T d1l0qa2 95 --------------------------------------SSTLSVIDTTSNTVAGT--VKTGKSPLGLALSPDGKK----L 130 (301)
T ss_dssp --------------------------------------TTEEEEEETTTTEEEEE--EECSSSEEEEEECTTSSE----E
T ss_pred --------------------------------------cceeeecccccceeeee--ccccccceEEEeecCCCe----e
Confidence 25688899988876554 344445667899999997 7
Q ss_pred EEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccC
Q 003363 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (826)
Q Consensus 314 vf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~ 393 (826)
++... ....++.++. .++................++||++.++......
T Consensus 131 ~~~~~--------------~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (301)
T d1l0qa2 131 YVTNN--------------GDKTVSVINT-----------------VTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDS 179 (301)
T ss_dssp EEEET--------------TTTEEEEEET-----------------TTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT
T ss_pred eeeec--------------cccceeeeec-----------------cccceeeecccCCCceEEEeeccccceeeecccc
Confidence 76652 2235677776 4444443333344456778999999887665442
Q ss_pred CCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003363 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (826)
Q Consensus 394 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~v 473 (826)
..+.+++....... ...... .......|++||+.+++.........|+.+
T Consensus 180 ----------~~~~~~~~~~~~~~----------~~~~~~----------~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~ 229 (301)
T d1l0qa2 180 ----------MSISVIDTVTNSVI----------DTVKVE----------AAPSGIAVNPEGTKAYVTNVDKYFNTVSMI 229 (301)
T ss_dssp ----------TEEEEEETTTTEEE----------EEEECS----------SEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred ----------cccccccccceeee----------eccccc----------CCcceeeccccccccccccccceeeeeeee
Confidence 34555654443221 111000 012356789999998887666666789999
Q ss_pred ECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 474 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 474 dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
|+.+++...............|++||+++++..+... .|.+.|+.++
T Consensus 230 D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~---~i~v~D~~t~ 276 (301)
T d1l0qa2 230 DTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCN---TVSVIDTATN 276 (301)
T ss_dssp ETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTT---EEEEEETTTT
T ss_pred ecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCC---eEEEEECCCC
Confidence 9999887654333334556789999998776654333 5888886544
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.42 E-value=3.6e-13 Score=137.72 Aligned_cols=210 Identities=14% Similarity=0.084 Sum_probs=124.5
Q ss_pred CCCcEEEEEcCCCCCCCCccchH---HHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCC--CCcchHHH--HHHHHHHH
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK--VGSQDVND--VLTAIDHV 662 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~--~~~~~~~D--~~~~i~~l 662 (826)
+++|+|+++||.+.......|.. ..+.+++.|++|+.||-...+ +...+....... .+....++ +.+.+.+|
T Consensus 27 ~~~p~lyllhG~~g~~d~~~W~~~~~~~~~~~~~~~ivV~P~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~i 105 (280)
T d1dqza_ 27 GGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSS-FYTDWYQPSQSNGQNYTYKWETFLTREMPAWL 105 (280)
T ss_dssp CSSSEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCTTC-TTSBCSSSCTTTTCCSCCBHHHHHHTHHHHHH
T ss_pred CCCCEEEECCCCCCCCccchhhhcchHHHHHHhCCcEEEEECCCCCC-cCccccCCcccccCCcchhHHHHHHHHHHHHH
Confidence 36799999999654433344443 456788999999999953322 222221111101 11112222 34556677
Q ss_pred HHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhh
Q 003363 663 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED 742 (826)
Q Consensus 663 ~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (826)
.++..+|+++++|+|+||||++|+.+++++|++|+++++.+|..+........ .... .....+......+.+.+.
T Consensus 106 ~~~~~~d~~r~~i~G~SmGG~~Al~lA~~~Pd~F~av~s~SG~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~g~~~--- 180 (280)
T d1dqza_ 106 QANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWWPT-LIGL-AMNDSGGYNANSMWGPSS--- 180 (280)
T ss_dssp HHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTTSTTHHH-HHHH-HHHHTTSCCHHHHHCSTT---
T ss_pred HHhcCCCCCceEEEEechHHHHHHHHHHhCcCceeEEEEecCccCcccCcchh-hhhh-hHhhccCCCHhhccCCcc---
Confidence 77767899999999999999999999999999999999999987542110000 0000 000111100000111111
Q ss_pred HHHHhhcCcccccCCC---CCcEEEEEeCCCCCCC--------------cHHHHHHHHHHHhCCCC-EEEEEeCCCCCCC
Q 003363 743 LTRFHSKSPISHISKV---KTPTIFLLGAQDLRVP--------------VSNGLQYARALREKGVE-TKVIVFPNDVHGI 804 (826)
Q Consensus 743 ~~~~~~~sp~~~~~~i---~~PvLii~G~~D~~vp--------------~~~~~~~~~~l~~~g~~-~~~~~~p~~~H~~ 804 (826)
...+...+|...++++ ..++++.+|..|...+ ......+.+.|..+|.. +.+...++++|.+
T Consensus 181 ~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~g~~~~~~~~~~~GgH~W 260 (280)
T d1dqza_ 181 DPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTYAADGGRNGVFNFPPNGTHSW 260 (280)
T ss_dssp SHHHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECCSCCCSSH
T ss_pred hhhhhhcCHHHHHHHhhhcCCeEEEEeCCCCCccccccccccchhhHHHHHHHHHHHHHHHHcCCCeEEEEEcCCCccCc
Confidence 1234456676655544 3678999999887543 24566788888888765 4444455678975
Q ss_pred C
Q 003363 805 E 805 (826)
Q Consensus 805 ~ 805 (826)
.
T Consensus 261 ~ 261 (280)
T d1dqza_ 261 P 261 (280)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.42 E-value=6.8e-13 Score=134.59 Aligned_cols=215 Identities=16% Similarity=0.155 Sum_probs=129.8
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH---HHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
.|..+...++.|. .|+|+++||.........|.. ..+.+++.+++|+.+|--... +...+.. .+
T Consensus 14 ~~r~~~~~v~~~~-------~pvlylLhG~~g~~~~~~w~~~~~~~~~~~~~~~iVV~p~g~~~~-~y~~~~~-----~~ 80 (267)
T d1r88a_ 14 MGRDIPVAFLAGG-------PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAYS-MYTNWEQ-----DG 80 (267)
T ss_dssp TTEEEEEEEECCS-------SSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCCTTS-TTSBCSS-----CT
T ss_pred CCceeeEEEECCC-------CCEEEEcCCCCCCCCcchhhhccHHHHHHhhCCeEEEEECCCCCc-CCccccc-----cc
Confidence 4566776666543 389999999544333334433 456778899999999842211 2222211 11
Q ss_pred cchHHHHH--HHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhc
Q 003363 649 SQDVNDVL--TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 726 (826)
Q Consensus 649 ~~~~~D~~--~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 726 (826)
....++.+ +.+.++.++..+|++|++|.|+||||++|+.+++++|++|+++++.+|.++.......... .......
T Consensus 81 ~~~~~tfl~~eL~~~i~~~~~~d~~r~~i~G~SmGG~~Al~la~~~Pd~F~av~~~SG~~~~~~~~~~~~~--~~~~~~~ 158 (267)
T d1r88a_ 81 SKQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTNGAI--AAGMQQF 158 (267)
T ss_dssp TCBHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSHHHHHHH--HHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhcCCCCCceEEEEEcchHHHHHHHHHhCcccccEEEEeCCccCCCCccchhhh--hhHHhhh
Confidence 22233322 3566777777799999999999999999999999999999999999998764321100000 0000000
Q ss_pred cCcCCccCCCCCChhhHHHHhhcCcccccCC---CCCcEEEEEeCCCCCCCc-----------HHHHHHHHHHHhC-CCC
Q 003363 727 GSKGKDSFTESPSVEDLTRFHSKSPISHISK---VKTPTIFLLGAQDLRVPV-----------SNGLQYARALREK-GVE 791 (826)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~---i~~PvLii~G~~D~~vp~-----------~~~~~~~~~l~~~-g~~ 791 (826)
+......+.+.+ ....+.+.+|...+++ ...++++.+|..|..+.. .....+.++|++. +.+
T Consensus 159 ~~~~~~~~~g~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 235 (267)
T d1r88a_ 159 GGVDTNGMWGAP---QLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGNSRMFYNQYRSVGGHN 235 (267)
T ss_dssp HCCCTHHHHCCG---GGSTTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHHHHHHHHHHHHTTCCS
T ss_pred cCCcHhhccCCc---chHhHHhcCHHHHHHhccccCceEEEEecCCCcccccchhhhhHHHhhhhHHHHHHHHHHcCCCc
Confidence 000000000100 1122334566554443 246789999999876543 3455677778776 467
Q ss_pred EEEEEeCCCCCCC
Q 003363 792 TKVIVFPNDVHGI 804 (826)
Q Consensus 792 ~~~~~~p~~~H~~ 804 (826)
+.+...++++|.+
T Consensus 236 ~~~~~~~~G~H~W 248 (267)
T d1r88a_ 236 GHFDFPASGDNGW 248 (267)
T ss_dssp EEEECCSSCCSSH
T ss_pred EEEEEcCCCeECh
Confidence 8888888899965
|
| >d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=7.8e-13 Score=133.11 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=75.3
Q ss_pred EEEEEcCCCCCCCCccchHHHHHHHHC--CcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 594 LIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~la~~--G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.||++||.+.+ ...|...+..|.+. ||.|+++|+|| +|.+... ....++++...+..+++. ++ +
T Consensus 4 PvvllHG~~~~--~~~~~~~~~~l~~~~~~~~v~~~d~~G---~g~S~~~------~~~~~~~~~~~l~~~l~~--l~-~ 69 (268)
T d1pjaa_ 4 PVIVVHGLFDS--SYSFRHLLEYINETHPGTVVTVLDLFD---GRESLRP------LWEQVQGFREAVVPIMAK--AP-Q 69 (268)
T ss_dssp CEEEECCTTCC--GGGGHHHHHHHHHHSTTCCEEECCSSC---SGGGGSC------HHHHHHHHHHHHHHHHHH--CT-T
T ss_pred CEEEECCCCCC--HHHHHHHHHHHHhhCCCeEEEEeCCCC---CCCCCCc------cccCHHHHHHHHHHHHhc--cC-C
Confidence 36789997755 56888889999764 89999999999 6665321 123456666666666665 33 7
Q ss_pred cEEEEEecchHHHHHHHHHhCCC-ceeEEEecCC
Q 003363 672 KVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNP 704 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~p 704 (826)
++.|+||||||.+++.+|.++|+ +++.+|+.++
T Consensus 70 ~~~lvGhS~GG~ia~~~a~~~p~~~v~~lvl~~~ 103 (268)
T d1pjaa_ 70 GVHLICYSQGGLVCRALLSVMDDHNVDSFISLSS 103 (268)
T ss_dssp CEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESC
T ss_pred eEEEEccccHHHHHHHHHHHCCccccceEEEECC
Confidence 89999999999999999999998 5999888776
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.39 E-value=5.9e-13 Score=136.06 Aligned_cols=233 Identities=11% Similarity=0.049 Sum_probs=135.3
Q ss_pred CCeeEEEEEEecCCCC-----CCCCCcEEEEEcCCCCCCCCccchH---HHHHHHHCCcEEEEECCCCCC----------
Q 003363 572 AQKPFEAIFVSSSHKK-----DCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSL---------- 633 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~-----~~~~~P~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vl~~d~rG~~---------- 633 (826)
-|.++...+|+|+++. .++++|+|+++||.+.. ...|.. ....+.+.|++|+.++.....
T Consensus 24 l~~~~~~~VyLP~~y~~~~~~~~~~yPVLYlLhG~~~~--~~~w~~~~~~~~~~~~~~~~vv~~~~~p~~~~~~~~~~~~ 101 (299)
T d1pv1a_ 24 TKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCT--PDNASEKAFWQFQADKYGFAIVFPDTSPRGDEVANDPEGS 101 (299)
T ss_dssp SSSEEEEEEEECTTTTSCCCSSCTTBCEEEEECCTTCC--HHHHHHHSCHHHHHHHHTCEEEECCSSCCSTTSCCCTTCC
T ss_pred cCCceEEEEEeCCcccccCcccCCCCCEEEEcCCCCCC--HHHHHHhhhHHHHHHHcCCceecCCCcccccccCCccccc
Confidence 3567888999999873 35679999999996543 334432 344566789999988732110
Q ss_pred ---CCchhhhhcCCC-CC-CcchHHHH--HHHHHHHHHcCCC-------CCCcEEEEEecchHHHHHHHHHh--CCCcee
Q 003363 634 ---GFGEEALQSLPG-KV-GSQDVNDV--LTAIDHVIDMGLA-------NPSKVTVVGGSHGGFLTTHLIGQ--APDKFV 697 (826)
Q Consensus 634 ---g~G~~~~~~~~~-~~-~~~~~~D~--~~~i~~l~~~~~~-------d~~rv~l~G~S~GG~~a~~~a~~--~p~~~~ 697 (826)
+.+..+...... .+ +....++. .+.+.++.++..+ +.++.+|.|+||||+.|+.++.+ +|++|.
T Consensus 102 ~~~g~~~~~y~d~~~~p~~~~~~~~~~i~~EL~p~i~~~~~~~~~r~~~~~~~~~I~G~SmGG~gAl~~al~~~~p~~f~ 181 (299)
T d1pv1a_ 102 WDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGHSMGGYGAICGYLKGYSGKRYK 181 (299)
T ss_dssp SSSSSSCCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEETHHHHHHHHHHHHTGGGTCCS
T ss_pred ccccCCCccccccccCCcccccchHHHHHHHHHHHHHHhCCcccccccccccceEEEeecccHHHHHHHHHHhcCCCceE
Confidence 001111000000 00 01112221 1233444443222 33679999999999999999876 489999
Q ss_pred EEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccC---CC-CCcEEEEEeCCCCCC
Q 003363 698 AAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS---KV-KTPTIFLLGAQDLRV 773 (826)
Q Consensus 698 a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~---~i-~~PvLii~G~~D~~v 773 (826)
++++.+|+.+....... .......++. ....+...++...+. +. ..++++.+|++|...
T Consensus 182 ~~~s~s~~~~~~~~~~~----~~~~~~~~g~-------------~~~~~~~~~~~~l~~~~~~~~~~~i~~~~G~~D~~~ 244 (299)
T d1pv1a_ 182 SCSAFAPIVNPSNVPWG----QKAFKGYLGE-------------EKAQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFL 244 (299)
T ss_dssp EEEEESCCCCSTTSHHH----HHHHHHHSCC-----------------CGGGCHHHHGGGSCCCTTCCEEEECCTTCTTT
T ss_pred EEeeccCcCCcccccch----hhhhhhhccc-------------chhhhhhcCHHHHHHHhhccCCcceeEecCCCCcch
Confidence 99999998764321000 0000001111 011223334433322 22 356888899999877
Q ss_pred CcH-HHHHHHHHHHhCCCC--EEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 774 PVS-NGLQYARALREKGVE--TKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 774 p~~-~~~~~~~~l~~~g~~--~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
+.. ....+.+++++++.+ +++...||.+|.+.. ........+.|+.++|+
T Consensus 245 ~~~~~~~~f~~~~~~~g~~~~~~~~~~~G~~Hsw~y---W~~~i~~~l~f~a~~lg 297 (299)
T d1pv1a_ 245 EEHLKPELLLEAVKATSWQDYVEIKKVHGFDHSYYF---VSTFVPEHAEFHARNLG 297 (299)
T ss_dssp TTTCCTHHHHHHHTTSTTTTSEEEECCTTCCSSHHH---HHHHHHHHHHHHHHHTT
T ss_pred hhhhcHHHHHHHHHhcCCCcceEEEecCCCCcCHHH---HHHHHHHHHHHHHHhcC
Confidence 653 356788889888765 777778888897532 12345567789998875
|
| >d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Aspergillus niger [TaxId: 5061]
Probab=99.38 E-value=1.1e-12 Score=141.32 Aligned_cols=119 Identities=16% Similarity=0.142 Sum_probs=91.9
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCC------cEEEEECCCCCCCCchhhhhcCCC
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG------YSLLIVNYRGSLGFGEEALQSLPG 645 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G------~~Vl~~d~rG~~g~G~~~~~~~~~ 645 (826)
+|..||...+... .+..|.||++||.|.+ ...|...+..|++.| |.|+++|+|| ||.+.. +.
T Consensus 90 ~G~~iHf~h~~~~----~~~~~pLlLlHG~P~s--~~~w~~vi~~La~~g~~~~~~f~VIaPDLpG---~G~S~~---P~ 157 (394)
T d1qo7a_ 90 EGLTIHFAALFSE----REDAVPIALLHGWPGS--FVEFYPILQLFREEYTPETLPFHLVVPSLPG---YTFSSG---PP 157 (394)
T ss_dssp TTEEEEEEEECCS----CTTCEEEEEECCSSCC--GGGGHHHHHHHHHHCCTTTCCEEEEEECCTT---STTSCC---CC
T ss_pred CCEEEEEEEEecc----CCCCCEEEEecccccc--HHHHHHHHHhhccccCCcccceeeecccccc---cCCCCC---CC
Confidence 6788987666543 4556789999998877 668999999999988 9999999999 555432 22
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCC
Q 003363 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 704 (826)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p 704 (826)
........++.+.+..+.+. +..++..++|||+||.++..+++.+|+.+.++++...
T Consensus 158 ~~~~y~~~~~a~~~~~l~~~--lg~~~~~~vg~~~Gg~v~~~~a~~~p~~~~~~~l~~~ 214 (394)
T d1qo7a_ 158 LDKDFGLMDNARVVDQLMKD--LGFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNLC 214 (394)
T ss_dssp SSSCCCHHHHHHHHHHHHHH--TTCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCccCHHHHHHHHHHHHhh--ccCcceEEEEecCchhHHHHHHHHhhccccceeEeee
Confidence 22334567777777777776 3456789999999999999999999998888877654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=8.2e-11 Score=122.42 Aligned_cols=38 Identities=8% Similarity=-0.088 Sum_probs=30.7
Q ss_pred CCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003363 446 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 483 (826)
Q Consensus 446 ~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~l 483 (826)
+..++|+|||++||++....+...+|.+|.++|+++++
T Consensus 278 p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~ 315 (333)
T d1ri6a_ 278 PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEK 315 (333)
T ss_dssp CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEE
T ss_pred eeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEEEE
Confidence 34678999999987765556778899999999988765
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.33 E-value=2.4e-10 Score=120.15 Aligned_cols=307 Identities=9% Similarity=-0.025 Sum_probs=171.9
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCC-----C
Q 003363 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN-----E 177 (826)
Q Consensus 103 ~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~-----~ 177 (826)
..||||+++ |..... .+.....+|+++.. .++.+..... +....++|||||++|++...... .
T Consensus 8 a~spdg~~~-~v~~~~---~~~~~~~v~v~D~~--tg~~~~~~~~------g~~~~~a~SpDg~~l~v~~~~~~~~~~g~ 75 (355)
T d2bbkh_ 8 APAPDARRV-YVNDPA---HFAAVTQQFVIDGE--AGRVIGMIDG------GFLPNPVVADDGSFIAHASTVFSRIARGE 75 (355)
T ss_dssp CCCCCTTEE-EEEECG---GGCSSEEEEEEETT--TTEEEEEEEE------CSSCEEEECTTSSCEEEEEEEEEETTEEE
T ss_pred eeCCCCCEE-EEEecc---cCCCcCeEEEEECC--CCcEEEEEEC------CCCCceEEcCCCCEEEEEeCCCccccccC
Confidence 458999999 443332 22345678887753 3333221111 23446899999999988654211 1
Q ss_pred CCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCC
Q 003363 178 SPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 255 (826)
Q Consensus 178 ~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (826)
....+.+| ..++..+.+.........+ ......+.|||||+++++....
T Consensus 76 ~d~~v~v~D~~t~~~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~~~v~~~~--------------------------- 126 (355)
T d2bbkh_ 76 RTDYVEVFDPVTLLPTADIELPDAPRFLV--GTYPWMTSLTPDGKTLLFYQFS--------------------------- 126 (355)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCCCCCB--SCCGGGEEECTTSSEEEEEECS---------------------------
T ss_pred CCCEEEEEECCCCCEEEEEecCCcceeec--CCCCceEEEecCCCeeEEecCC---------------------------
Confidence 12345566 3455555554432221111 0112468899999999875332
Q ss_pred cceeecCCCccCCCccCceEEEEEccCCceEeccCCCCC------CccceEEEeeCCCCCccEEEEEeecCcceeeeeee
Q 003363 256 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS------LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKY 329 (826)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~------~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~ 329 (826)
....+.+++..++++......+.. .....+.+++||+. +++.....
T Consensus 127 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~----~~v~~~~~--------- 178 (355)
T d2bbkh_ 127 ---------------PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSL----AKVAFGTE--------- 178 (355)
T ss_dssp ---------------SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCE----EEEECCSS---------
T ss_pred ---------------CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCE----EEEEecCC---------
Confidence 225678888888876543111211 12335678888886 65544211
Q ss_pred eccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEE
Q 003363 330 CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 409 (826)
Q Consensus 330 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~ 409 (826)
..+...+. ..... ........+.+++++..+++.+.. ..++++
T Consensus 179 -----~~~~~~~~-----------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~v~ 221 (355)
T d2bbkh_ 179 -----GTPEITHT-----------------EVFHP----EDEFLINHPAYSQKAGRLVWPTYT-----------GKIHQI 221 (355)
T ss_dssp -----SCCEEEEC-----------------CCCSC----TTSCBCSCCEEETTTTEEEEEBTT-----------SEEEEE
T ss_pred -----CeEEEEec-----------------ccccc----eecceeeeccccCCCCeEEEecCC-----------CeEEEE
Confidence 23444443 11111 111224457888899999887644 458999
Q ss_pred eCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC-------CeEEEEEEECCCCcEEE
Q 003363 410 DWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-------SSQVIISVNVSSGELLR 482 (826)
Q Consensus 410 d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~-------~~~~l~~vdl~tg~~~~ 482 (826)
++.++....+............. . ........+.+++|++.+++..... ....|+.+|+.+++...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~----~---~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~ 294 (355)
T d2bbkh_ 222 DLSSGDAKFLPAVEALTEAERAD----G---WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA 294 (355)
T ss_dssp ECTTSSCEECCCEESSCHHHHHT----T---EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE
T ss_pred ecCCCcEEEEeccCCcccceEee----e---eeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEE
Confidence 98876653222111100000000 0 0011234577899999888877643 34679999999888764
Q ss_pred ecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 003363 483 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 524 (826)
Q Consensus 483 lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~ 524 (826)
............|++||+.++++....+ ..|++.|+.+++
T Consensus 295 ~~~~~~~~~~~a~spDG~~~l~v~~~~d--~~i~v~D~~tg~ 334 (355)
T d2bbkh_ 295 KFEMGHEIDSINVSQDEKPLLYALSTGD--KTLYIHDAESGE 334 (355)
T ss_dssp EEEEEEEECEEEECCSSSCEEEEEETTT--TEEEEEETTTCC
T ss_pred EecCCCCEEEEEEcCCCCeEEEEEECCC--CEEEEEECCCCC
Confidence 3332233445679999987776665443 468888876543
|
| >d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase A species: Bacillus subtilis [TaxId: 1423]
Probab=99.31 E-value=7.6e-12 Score=118.25 Aligned_cols=168 Identities=16% Similarity=0.048 Sum_probs=115.9
Q ss_pred EEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEE
Q 003363 595 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVT 674 (826)
Q Consensus 595 vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~ 674 (826)
||++||.... ...|...+..|+++||.|+.+++++.+.... ......+++.+.++.++++ ...+++.
T Consensus 5 Vv~vHG~~~~--~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~i~~~~~~--~~~~~v~ 71 (179)
T d1ispa_ 5 VVMVHGIGGA--SFNFAGIKSYLVSQGWSRDKLYAVDFWDKTG---------TNYNNGPVLSRFVQKVLDE--TGAKKVD 71 (179)
T ss_dssp EEEECCTTCC--GGGGHHHHHHHHHTTCCGGGEEECCCSCTTC---------CHHHHHHHHHHHHHHHHHH--HCCSCEE
T ss_pred EEEECCCCCC--HHHHHHHHHHHHHcCCeEEEEecCCcccccc---------ccchhhhhHHHHHHHHHHh--cCCceEE
Confidence 6779997654 5678889999999999999998887432211 1112356677777777765 3457899
Q ss_pred EEEecchHHHHHHHHHhC--CCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcc
Q 003363 675 VVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPI 752 (826)
Q Consensus 675 l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 752 (826)
|+||||||.++..++.++ +++++.+|++++........ ..+
T Consensus 72 lvGHSmGG~va~~~~~~~~~~~~V~~~V~l~~p~~g~~~~-----------------------~l~-------------- 114 (179)
T d1ispa_ 72 IVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTGK-----------------------ALP-------------- 114 (179)
T ss_dssp EEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCSB-----------------------CCC--------------
T ss_pred EEeecCcCHHHHHHHHHcCCchhhCEEEEECCCCCCchhh-----------------------hcC--------------
Confidence 999999999999998876 57899999887653221100 000
Q ss_pred cccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 753 SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 753 ~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
........|++.++|..|..|++..+ ++. ..+.+.+++.+|.... .+. ++++.+.+||+.
T Consensus 115 ~~~~~~~~~~~~i~~~~D~~v~~~~~-----~l~----~~~~~~~~~~~H~~l~-~~~-~v~~~i~~~L~~ 174 (179)
T d1ispa_ 115 GTDPNQKILYTSIYSSADMIVMNYLS-----RLD----GARNVQIHGVGHIGLL-YSS-QVNSLIKEGLNG 174 (179)
T ss_dssp CSCTTCCCEEEEEEETTCSSSCHHHH-----CCB----TSEEEEESSCCTGGGG-GCH-HHHHHHHHHHTT
T ss_pred CcccccCceEEEEEecCCcccCchhh-----cCC----CceEEEECCCCchhhc-cCH-HHHHHHHHHHhc
Confidence 00112357999999999999998654 222 2466788999996432 232 678888888864
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.31 E-value=1.1e-10 Score=121.09 Aligned_cols=237 Identities=13% Similarity=0.056 Sum_probs=143.3
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
....+++|+|+.|||.... .+ .+| ......+++. +..+.| ..++|||||++||..+.+
T Consensus 20 ~~~~a~~~~g~~l~~~~~~-----~v-~i~~~~~~~~~~~~~---~H~~~v------~~~~~sp~g~~latg~~d----- 79 (311)
T d1nr0a1 20 AVVLGNTPAGDKIQYCNGT-----SV-YTVPVGSLTDTEIYT---EHSHQT------TVAKTSPSGYYCASGDVH----- 79 (311)
T ss_dssp CCCCEECTTSSEEEEEETT-----EE-EEEETTCSSCCEEEC---CCSSCE------EEEEECTTSSEEEEEETT-----
T ss_pred eEEEEEcCCCCEEEEEeCC-----EE-EEEECCCCceeEEEc---CCCCCE------EEEEEeCCCCeEeccccC-----
Confidence 4457899999999997543 24 344 3344444432 222223 899999999999876443
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceE---eccCCCCCCccceEEEeeCCCCCc
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ---AVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~---~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
..|.+||+.+++.. .+ ......+..++|+|||+.
T Consensus 80 ---------------------------------------g~i~iwd~~~~~~~~~~~~--~~~~~~v~~v~~s~d~~~-- 116 (311)
T d1nr0a1 80 ---------------------------------------GNVRIWDTTQTTHILKTTI--PVFSGPVKDISWDSESKR-- 116 (311)
T ss_dssp ---------------------------------------SEEEEEESSSTTCCEEEEE--ECSSSCEEEEEECTTSCE--
T ss_pred ---------------------------------------ceEeeeeeecccccccccc--ccccCccccccccccccc--
Confidence 57899999877532 23 122346778999999997
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEe
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 390 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s 390 (826)
|+..+.. ....+.+++++ ......++..+...+....|+|||++++...
T Consensus 117 --l~~~~~~-------------~~~~~~v~~~~----------------~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sg 165 (311)
T d1nr0a1 117 --IAAVGEG-------------RERFGHVFLFD----------------TGTSNGNLTGQARAMNSVDFKPSRPFRIISG 165 (311)
T ss_dssp --EEEEECC-------------SSCSEEEEETT----------------TCCBCBCCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred --ccccccc-------------ccccccccccc----------------cccccccccccccccccccccccceeeeccc
Confidence 7776521 22245566762 2233456666667788889999999754443
Q ss_pred ccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEE
Q 003363 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470 (826)
Q Consensus 391 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l 470 (826)
..+ ..|.+||+.++........ +...+..+.|+|||+.|+. ...++ .+
T Consensus 166 s~d----------~~i~i~d~~~~~~~~~~~~-------------------~~~~i~~v~~~p~~~~l~~-~~~d~--~v 213 (311)
T d1nr0a1 166 SDD----------NTVAIFEGPPFKFKSTFGE-------------------HTKFVHSVRYNPDGSLFAS-TGGDG--TI 213 (311)
T ss_dssp ETT----------SCEEEEETTTBEEEEEECC-------------------CSSCEEEEEECTTSSEEEE-EETTS--CE
T ss_pred ccc----------ccccccccccccccccccc-------------------ccccccccccCcccccccc-ccccc--cc
Confidence 332 4588899877443211100 1112346789999996654 33334 45
Q ss_pred EEEECCCCcEEEecCC--------CCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003363 471 ISVNVSSGELLRITPA--------ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (826)
Q Consensus 471 ~~vdl~tg~~~~lt~~--------~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 522 (826)
..+|+.+++....... ...+....|+++++.|+....+ . .|.+.++.+
T Consensus 214 ~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~D--g--~v~iwd~~t 269 (311)
T d1nr0a1 214 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD--K--TIKIWNVAT 269 (311)
T ss_dssp EEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT--S--EEEEEETTT
T ss_pred cccccccccccccccccccccccccccccccccCCCCCEEEEEeCC--C--eEEEEECCC
Confidence 5567777665443321 1234556788888876654322 2 466666543
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.30 E-value=1.4e-10 Score=123.27 Aligned_cols=254 Identities=10% Similarity=0.066 Sum_probs=143.2
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
+...+|||||+.||+....+ .+.+| .+++...+..+. +..+.| ..+.|||||++|+..+.+
T Consensus 10 It~~~~s~dg~~la~~~~~~-----~i~iw~~~~~~~~~~~~l~-gH~~~V------~~l~fsp~~~~l~s~s~D----- 72 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICPNNH-----EVHIYEKSGNKWVQVHELK-EHNGQV------TGVDWAPDSNRIVTCGTD----- 72 (371)
T ss_dssp CCEEEECTTSSEEEEECSSS-----EEEEEEEETTEEEEEEEEE-CCSSCE------EEEEEETTTTEEEEEETT-----
T ss_pred eEEEEECCCCCEEEEEeCCC-----EEEEEECCCCCEEEEEEec-CCCCCE------EEEEECCCCCEEEEEECC-----
Confidence 78889999999999875532 45667 334444443332 333444 899999999999876432
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC-CCCCCccceEEEeeCCCCCccE
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~-~~~~~~~~~~~wSPDg~~~~~~ 312 (826)
..|++||+.+++.+.... ......+..+.|+|||+.
T Consensus 73 ---------------------------------------~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~---- 109 (371)
T d1k8kc_ 73 ---------------------------------------RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK---- 109 (371)
T ss_dssp ---------------------------------------SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSE----
T ss_pred ---------------------------------------CeEEEEeeccccccccccccccccccccccccccccc----
Confidence 468999998876543311 223446778999999997
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc---ceecCCCCccccCceecCCCCEEEEE
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESISSAFFPRFSPDGKFLVFL 389 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~Lt~~~~~~~~p~~SpDG~~l~f~ 389 (826)
|+..+. ++...+|.++. .... ......+...+....|+|||++|+..
T Consensus 110 l~~~s~-------------d~~i~i~~~~~-----------------~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~ 159 (371)
T d1k8kc_ 110 FAVGSG-------------SRVISICYFEQ-----------------ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159 (371)
T ss_dssp EEEEET-------------TSSEEEEEEET-----------------TTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred ceeecc-------------cCcceeeeeec-----------------ccccccccccccccccccccccccccccceecc
Confidence 776652 12123444442 1111 11222334556788999999998876
Q ss_pred eccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCC-CCcc-cccCCCCCCccccCCCEEEEEEEeCCe
Q 003363 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD-CFPG-LYSSSILSNPWLSDGCTMLLSSIWGSS 467 (826)
Q Consensus 390 s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~f~g-~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 467 (826)
+.+ ..+.+||.................. .+... .+.+ .....+..++|+|||+.|+.. ..++
T Consensus 160 s~D-----------~~v~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~-~~d~- 223 (371)
T d1k8kc_ 160 SCD-----------FKCRIFSAYIKEVEERPAPTPWGSK---MPFGELMFESSSSCGWVHGVCFSANGSRVAWV-SHDS- 223 (371)
T ss_dssp ETT-----------SCEEEEECCCTTTSCCCCCBTTBSC---CCTTCEEEECCCCSSCEEEEEECSSSSEEEEE-ETTT-
T ss_pred ccC-----------cEEEEEeeccCcccccccccccccc---ccceeeeeeccCccCcEEEEEeeccccccccc-ccCC-
Confidence 654 3477777655432211100000000 00000 0000 011234567899999976544 3334
Q ss_pred EEEEEEECCCCcEEE-ecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEe
Q 003363 468 QVIISVNVSSGELLR-ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 519 (826)
Q Consensus 468 ~~l~~vdl~tg~~~~-lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~ 519 (826)
.+..+|+.+++... +......+....|++++. +++..+ +.-..++..+
T Consensus 224 -~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~-~la~g~--d~~~~~~~~~ 272 (371)
T d1k8kc_ 224 -TVCLADADKKMAVATLASETLPLLAVTFITESS-LVAAGH--DCFPVLFTYD 272 (371)
T ss_dssp -EEEEEEGGGTTEEEEEECSSCCEEEEEEEETTE-EEEEET--TSSCEEEEEE
T ss_pred -cceEEeeecccceeeeecccccceeeeecCCCC-EEEEEc--CCceEEEEee
Confidence 46666877766543 443344455567888875 444433 3444565555
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.30 E-value=1.5e-10 Score=118.39 Aligned_cols=241 Identities=11% Similarity=0.129 Sum_probs=145.9
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003363 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (826)
Q Consensus 103 ~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (826)
..||||++++..... ...+.++++.+. .....+... ......++++||+.+++....+ ..+
T Consensus 38 a~spdG~~l~v~~~~--------~~~i~v~d~~t~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~----~~~ 98 (301)
T d1l0qa2 38 VISPDGTKVYVANAH--------SNDVSIIDTATN-NVIATVPAG------SSPQGVAVSPDGKQVYVTNMAS----STL 98 (301)
T ss_dssp EECTTSSEEEEEEGG--------GTEEEEEETTTT-EEEEEEECS------SSEEEEEECTTSSEEEEEETTT----TEE
T ss_pred EEeCCCCEEEEEECC--------CCEEEEEECCCC-ceeeeeecc------cccccccccccccccccccccc----cee
Confidence 358999988544222 235666665322 112222211 2467789999999998765432 234
Q ss_pred EEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceee
Q 003363 183 ELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (826)
Q Consensus 183 ~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (826)
.++ ..++....+...... ....|+|||+.+++....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~dg~~~~~~~~~-------------------------------- 136 (301)
T d1l0qa2 99 SVIDTTSNTVAGTVKTGKSP----------LGLALSPDGKKLYVTNNG-------------------------------- 136 (301)
T ss_dssp EEEETTTTEEEEEEECSSSE----------EEEEECTTSSEEEEEETT--------------------------------
T ss_pred eecccccceeeeeccccccc----------eEEEeecCCCeeeeeecc--------------------------------
Confidence 444 344444444443333 578999999998876432
Q ss_pred cCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEE
Q 003363 261 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 340 (826)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~ 340 (826)
...+.+++..+++.... ......+..+.|+||++. ++..... ...++..
T Consensus 137 -----------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~--------------~~~~~~~ 185 (301)
T d1l0qa2 137 -----------DKTVSVINTVTKAVINT--VSVGRSPKGIAVTPDGTK----VYVANFD--------------SMSISVI 185 (301)
T ss_dssp -----------TTEEEEEETTTTEEEEE--EECCSSEEEEEECTTSSE----EEEEETT--------------TTEEEEE
T ss_pred -----------ccceeeeeccccceeee--cccCCCceEEEeeccccc----eeeeccc--------------ccccccc
Confidence 25688889888876654 344445678899999997 7665421 1234445
Q ss_pred EcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcc
Q 003363 341 RVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL 420 (826)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~ 420 (826)
+. ...+...............|++||+.++...... ....|+++|+.+++....
T Consensus 186 ~~-----------------~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~--------~~~~v~v~D~~t~~~~~~- 239 (301)
T d1l0qa2 186 DT-----------------VTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK--------YFNTVSMIDTGTNKITAR- 239 (301)
T ss_dssp ET-----------------TTTEEEEEEECSSEEEEEEECTTSSEEEEEEECS--------SCCEEEEEETTTTEEEEE-
T ss_pred cc-----------------cceeeeecccccCCcceeeccccccccccccccc--------eeeeeeeeecCCCeEEEE-
Confidence 44 3333333333334456788999999987665442 235799999887553210
Q ss_pred cceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEE
Q 003363 421 EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 482 (826)
Q Consensus 421 ~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~ 482 (826)
++ .. ..+..++|+|||++||++...+ ..|..+|++++++..
T Consensus 240 ------~~---~~----------~~~~~va~spdg~~l~va~~~~--~~i~v~D~~t~~~~~ 280 (301)
T d1l0qa2 240 ------IP---VG----------PDPAGIAVTPDGKKVYVALSFC--NTVSVIDTATNTITA 280 (301)
T ss_dssp ------EE---CC----------SSEEEEEECTTSSEEEEEETTT--TEEEEEETTTTEEEE
T ss_pred ------Ec---CC----------CCEEEEEEeCCCCEEEEEECCC--CeEEEEECCCCeEEE
Confidence 01 00 1223678999999887764333 367778999987553
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.27 E-value=2.1e-10 Score=122.00 Aligned_cols=257 Identities=11% Similarity=0.075 Sum_probs=139.9
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCC-CccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENE-NSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~-~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (826)
+||||+.+++.. ....+.++++.+..- ....|.... ..+...+|||||++|+..+.+ + .+
T Consensus 15 ~s~dg~~la~~~---------~~~~i~iw~~~~~~~~~~~~l~gH~-----~~V~~l~fsp~~~~l~s~s~D--~---~i 75 (371)
T d1k8kc_ 15 WNKDRTQIAICP---------NNHEVHIYEKSGNKWVQVHELKEHN-----GQVTGVDWAPDSNRIVTCGTD--R---NA 75 (371)
T ss_dssp ECTTSSEEEEEC---------SSSEEEEEEEETTEEEEEEEEECCS-----SCEEEEEEETTTTEEEEEETT--S---CE
T ss_pred ECCCCCEEEEEe---------CCCEEEEEECCCCCEEEEEEecCCC-----CCEEEEEECCCCCEEEEEECC--C---eE
Confidence 489999887642 233566666543211 112222222 458899999999999877553 2 34
Q ss_pred EEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceee
Q 003363 183 ELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (826)
Q Consensus 183 ~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (826)
.+| ..+...+..... +..+.| ..+.|+||++.|+..+.+
T Consensus 76 ~vWd~~~~~~~~~~~~~-~~~~~v------~~i~~~p~~~~l~~~s~d-------------------------------- 116 (371)
T d1k8kc_ 76 YVWTLKGRTWKPTLVIL-RINRAA------RCVRWAPNEKKFAVGSGS-------------------------------- 116 (371)
T ss_dssp EEEEEETTEEEEEEECC-CCSSCE------EEEEECTTSSEEEEEETT--------------------------------
T ss_pred EEEeecccccccccccc-cccccc------cccccccccccceeeccc--------------------------------
Confidence 555 233333333332 222233 789999999999886543
Q ss_pred cCCCccCCCccCceEEEEEccCCceE--ecc-CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCce
Q 003363 261 EDWGETYAGKRQPSLFVININSGEVQ--AVK-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCAL 337 (826)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~~--~l~-~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l 337 (826)
..|.+|+++.+... ... .......+..++|+|||+. |+..+. +..+
T Consensus 117 ------------~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~----l~s~s~---------------D~~v 165 (371)
T d1k8kc_ 117 ------------RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL----LAAGSC---------------DFKC 165 (371)
T ss_dssp ------------SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE----EEEEET---------------TSCE
T ss_pred ------------Ccceeeeeecccccccccccccccccccccccccccccc----eecccc---------------CcEE
Confidence 23455554443321 110 1222335678999999997 776652 2245
Q ss_pred EEEEcccccchhh-hhhhhcCCCCCC-cceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 338 YAVRVSLYKSEAS-ELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 338 ~~~d~~~~~~~~~-~~~~~~~~~~~~-~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
..++......... ...........+ .......+...+...+|||||++|+..+.+ ..|.+||+.++.
T Consensus 166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d-----------~~i~iwd~~~~~ 234 (371)
T d1k8kc_ 166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD-----------STVCLADADKKM 234 (371)
T ss_dssp EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT-----------TEEEEEEGGGTT
T ss_pred EEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccC-----------CcceEEeeeccc
Confidence 5555421100000 000000000111 122334445567788999999999877754 458899987654
Q ss_pred CCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003363 416 NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (826)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~ 481 (826)
... .+ .. ....+..+.|+|||+.| .+ ..++...+|.++..++...
T Consensus 235 ~~~---------~~-~~---------~~~~v~s~~fs~d~~~l-a~-g~d~~~~~~~~~~~~~~~~ 279 (371)
T d1k8kc_ 235 AVA---------TL-AS---------ETLPLLAVTFITESSLV-AA-GHDCFPVLFTYDSAAGKLS 279 (371)
T ss_dssp EEE---------EE-EC---------SSCCEEEEEEEETTEEE-EE-ETTSSCEEEEEETTTTEEE
T ss_pred cee---------ee-ec---------ccccceeeeecCCCCEE-EE-EcCCceEEEEeeCCCceEE
Confidence 311 10 00 01123467899999644 33 3356667888887655544
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.27 E-value=1.9e-09 Score=113.99 Aligned_cols=300 Identities=8% Similarity=-0.025 Sum_probs=161.4
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCcceecccEEEEeCCCCCeEEEEecCCC-----C
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN-----E 177 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~-~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~-----~ 177 (826)
.||||+++++.... .......+|+++. ..++.. ++. . .....++|||||++|++...... .
T Consensus 28 ~spdg~~~~~~~~~----~~~~~~~v~v~D~--~tg~~~~~~~-~------~~~~~~a~SpDG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 28 PGADGRRSYINLPA----HHSAIIQQWVLDA--GSGSILGHVN-G------GFLPNPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred cCCCCCEEEEEccc----ccCCCceEEEEEC--CCCCEEEEEe-C------CCCccEEEcCCCCEEEEEeecCCcccccc
Confidence 48999999665322 1234457888764 333332 222 1 12346899999999998765431 1
Q ss_pred CCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCC
Q 003363 178 SPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 255 (826)
Q Consensus 178 ~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (826)
....+.+| ..++....+..+......+ ...-..+.|||||+.+++.....
T Consensus 95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~~~v~~~~~-------------------------- 146 (373)
T d2madh_ 95 RTDYVEVFDPVTFLPIADIELPDAPRFDV--GPYSWMNANTPNNADLLFFQFAA-------------------------- 146 (373)
T ss_pred cceEEEEEECCCCcEEEEEecCCcceeEe--ccCCCcEEEEeCCCcEEEEEEcC--------------------------
Confidence 12344555 3445544444332210000 00114678999999888765432
Q ss_pred cceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCC
Q 003363 256 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 335 (826)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~ 335 (826)
...+.+++..++++... .. ....+.++|||+. +++... .+.
T Consensus 147 ----------------~~~~~~~~~~~~~~~~~--~~---~~~~~~~s~~g~~----~~v~~~--------------~dg 187 (373)
T d2madh_ 147 ----------------GPAVGLVVQGGSSDDQL--LS---SPTCYHIHPGAPS----TFYLLC--------------AQG 187 (373)
T ss_pred ----------------CCceEEeeccCCeEEEE--ec---cceeEEEecCCCc----EEEEEc--------------CCC
Confidence 24566677777665544 11 2446789999997 655542 223
Q ss_pred ceEEEEcccccchhhhhhhhcCCCCCCcceecCC-------CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEE
Q 003363 336 ALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-------SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR 408 (826)
Q Consensus 336 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~-------~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~ 408 (826)
.+++++. .+++...... .........+++++..+ +.+.. ..+++
T Consensus 188 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------~~v~~ 238 (373)
T d2madh_ 188 GLAKTDH-----------------AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV-WPVYS-----------GKILQ 238 (373)
T ss_pred eEEEEEc-----------------CCceeeEEEeeeccccCccceeeeEEECCCceEE-EecCC-----------ceEEE
Confidence 6777776 3333322111 11122334556666544 33322 34666
Q ss_pred EeCCCCCCCCcccc---eeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC-------CeEEEEEEECCCC
Q 003363 409 IDWPTNGNFSSLEK---IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-------SSQVIISVNVSSG 478 (826)
Q Consensus 409 ~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~-------~~~~l~~vdl~tg 478 (826)
++..++....+... ..........+ .......|++|++.+++..... ....++.+|+.++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~ 308 (373)
T d2madh_ 239 ADISAAGATNKAPIDALSGGRKADTWRP----------GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG 308 (373)
T ss_pred EEcCCCeEEEEEeeccccCcEEeeeecc----------CcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCC
Confidence 66655433211100 00001100000 1123567889998777654322 2346888999888
Q ss_pred cEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 003363 479 ELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 524 (826)
Q Consensus 479 ~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~ 524 (826)
+...............|++||+.++++....+. .|++.|+.+++
T Consensus 309 ~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~--~v~v~D~~tg~ 352 (373)
T d2madh_ 309 QTSSQISLGHDVDAISVAQDGGPDLYALSAGTE--VLHIYDAGAGD 352 (373)
T ss_pred cEEEEecCCCCeeEEEECCCCCEEEEEEeCCCC--eEEEEECCCCC
Confidence 866655444445567899999987766554443 47888876543
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.26 E-value=1.5e-10 Score=118.71 Aligned_cols=265 Identities=15% Similarity=0.154 Sum_probs=143.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
..+...+|||||++||..+.++ .+.+|+ .++..+. ......+.| ..+.|+|||+.++ .+.+...
T Consensus 13 ~~V~~l~~s~dg~~l~s~s~Dg-----~v~vWd~~~~~~~~~--~~~~h~~~v------~~v~~~~~g~~~~-~~~d~~v 78 (299)
T d1nr0a2 13 KAITALSSSADGKTLFSADAEG-----HINSWDISTGISNRV--FPDVHATMI------TGIKTTSKGDLFT-VSWDDHL 78 (299)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEC--SSCSCSSCE------EEEEECTTSCEEE-EETTTEE
T ss_pred CCcEEEEECCCCCEEEEEcCCC-----eEEEEECCCCcEEEE--EcCCCCCcE------EEEEeeccceeec-ccceeeE
Confidence 4588999999999998765533 467773 3333322 222222333 7899999997544 4433322
Q ss_pred CCCCccCCCCCCC---CCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCC
Q 003363 232 SKPTFSLGSTKGG---SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308 (826)
Q Consensus 232 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~ 308 (826)
. .|........ ..............+.++ |..+.......+.+++. ++...+ ........++|+||++.
T Consensus 79 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~~~~~~~~~i~~~~~--~~~~~~---~~~~~~~~~~~s~~~~~ 150 (299)
T d1nr0a2 79 K--VVPAGGSGVDSSKAVANKLSSQPLGLAVSAD-GDIAVAACYKHIAIYSH--GKLTEV---PISYNSSCVALSNDKQF 150 (299)
T ss_dssp E--EECSSSSSSCTTSCCEEECSSCEEEEEECTT-SSCEEEEESSEEEEEET--TEEEEE---ECSSCEEEEEECTTSCE
T ss_pred E--EeccCCccccccccccccccccccccccccc-ccccccccccccccccc--cccccc---ccccccccccccccccc
Confidence 2 2221111110 111112222234456666 44444445567888874 333333 22334567899999997
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCccee--cCCCCccccCceecCCCCEE
Q 003363 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN--LTESISSAFFPRFSPDGKFL 386 (826)
Q Consensus 309 ~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--Lt~~~~~~~~p~~SpDG~~l 386 (826)
|+..+ .+..|..+|+ .+++... ...+...+....|+|||++|
T Consensus 151 ----l~~g~---------------~dg~i~~~d~-----------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 194 (299)
T d1nr0a2 151 ----VAVGG---------------QDSKVHVYKL-----------------SGASVSEVKTIVHPAEITSVAFSNNGAFL 194 (299)
T ss_dssp ----EEEEE---------------TTSEEEEEEE-----------------ETTEEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred ----ccccc---------------cccccccccc-----------------ccccccccccccccccccccccccccccc
Confidence 76654 2346888887 4443322 23345567788999999998
Q ss_pred EEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCC
Q 003363 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 466 (826)
Q Consensus 387 ~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~ 466 (826)
+..+.+ ..|++||+.++......... .+ +...+..++|+|||+.|+. ...++
T Consensus 195 ~~~~~d-----------~~i~~~~~~~~~~~~~~~~~---------------~~-h~~~v~~l~~s~~~~~l~s-gs~dg 246 (299)
T d1nr0a2 195 VATDQS-----------RKVIPYSVANNFELAHTNSW---------------TF-HTAKVACVSWSPDNVRLAT-GSLDN 246 (299)
T ss_dssp EEEETT-----------SCEEEEEGGGTTEESCCCCC---------------CC-CSSCEEEEEECTTSSEEEE-EETTS
T ss_pred cccccc-----------cccccccccccccccccccc---------------cc-cccccccccccccccceEE-EcCCC
Confidence 766544 35889998765432111110 00 1123446789999986654 34444
Q ss_pred eEEEEEEECCCCcEEEe--cCC-CCCeeeEEEeecCCEEEEEE
Q 003363 467 SQVIISVNVSSGELLRI--TPA-ESNFSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 467 ~~~l~~vdl~tg~~~~l--t~~-~~~~~~~~~s~dg~~l~~~~ 506 (826)
. |..+|+.+++...+ ... ........++++++.|+...
T Consensus 247 ~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s 287 (299)
T d1nr0a2 247 S--VIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAG 287 (299)
T ss_dssp C--EEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEE
T ss_pred E--EEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEe
Confidence 4 55557766543322 222 12222234566777655433
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=3.9e-10 Score=118.03 Aligned_cols=229 Identities=13% Similarity=0.097 Sum_probs=144.1
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCc-cceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003363 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENS-VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (826)
Q Consensus 103 ~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~-~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (826)
.++|||+.++... ....+.++++....... ..+.... ..+....|+|+|..++...... .
T Consensus 104 ~~s~dg~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~s~~~d~-----~ 164 (337)
T d1gxra_ 104 KLLPDGCTLIVGG---------EASTLSIWDLAAPTPRIKAELTSSA-----PACYALAISPDSKVCFSCCSDG-----N 164 (337)
T ss_dssp EECTTSSEEEEEE---------SSSEEEEEECCCC--EEEEEEECSS-----SCEEEEEECTTSSEEEEEETTS-----C
T ss_pred EEcCCCCEEEEee---------ccccccccccccccccccccccccc-----cccccccccccccccccccccc-----c
Confidence 3489998875432 23456666664332221 1222222 3467889999999998765543 2
Q ss_pred EEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCccee
Q 003363 182 FELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (826)
Q Consensus 182 ~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (826)
+.+| ..++..+... ...+.+ ..+.|+|+++.+++.+.+
T Consensus 165 i~~~~~~~~~~~~~~~---~~~~~v------~~l~~s~~~~~~~~~~~d------------------------------- 204 (337)
T d1gxra_ 165 IAVWDLHNQTLVRQFQ---GHTDGA------SCIDISNDGTKLWTGGLD------------------------------- 204 (337)
T ss_dssp EEEEETTTTEEEEEEC---CCSSCE------EEEEECTTSSEEEEEETT-------------------------------
T ss_pred cccccccccccccccc---cccccc------cccccccccccccccccc-------------------------------
Confidence 4444 3333333222 222222 688999999999886432
Q ss_pred ecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEE
Q 003363 260 EEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 339 (826)
Q Consensus 260 ~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~ 339 (826)
..+.+||+.+++.... ......+..++|+|+++. |+..+ ....++.
T Consensus 205 -------------~~v~i~d~~~~~~~~~--~~~~~~i~~l~~~~~~~~----l~~~~---------------~d~~i~i 250 (337)
T d1gxra_ 205 -------------NTVRSWDLREGRQLQQ--HDFTSQIFSLGYCPTGEW----LAVGM---------------ESSNVEV 250 (337)
T ss_dssp -------------SEEEEEETTTTEEEEE--EECSSCEEEEEECTTSSE----EEEEE---------------TTSCEEE
T ss_pred -------------ccccccccccceeecc--cccccceEEEEEcccccc----cceec---------------ccccccc
Confidence 5688999988875544 233445678899999997 76654 2347888
Q ss_pred EEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCc
Q 003363 340 VRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 419 (826)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~ 419 (826)
+|+ .+++......+...+....|||||++|+..+.+ ..|++||+.+++....
T Consensus 251 ~d~-----------------~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~D-----------g~i~iwd~~~~~~~~~ 302 (337)
T d1gxra_ 251 LHV-----------------NKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD-----------NLLNAWRTPYGASIFQ 302 (337)
T ss_dssp EET-----------------TSSCEEEECCCSSCEEEEEECTTSSEEEEEETT-----------SEEEEEETTTCCEEEE
T ss_pred ccc-----------------cccccccccccccccceEEECCCCCEEEEEeCC-----------CeEEEEECCCCCEEEE
Confidence 898 556666666667778899999999988765543 4589999887654221
Q ss_pred ccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003363 420 LEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (826)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~v 473 (826)
.. ....+..+.|+|||++|+ ++..++...||.+
T Consensus 303 ~~--------------------~~~~v~~~~~s~d~~~l~-t~s~D~~I~vWdl 335 (337)
T d1gxra_ 303 SK--------------------ESSSVLSCDISVDDKYIV-TGSGDKKATVYEV 335 (337)
T ss_dssp EE--------------------CSSCEEEEEECTTSCEEE-EEETTSCEEEEEE
T ss_pred cc--------------------CCCCEEEEEEeCCCCEEE-EEeCCCeEEEEEE
Confidence 11 111344678999998664 4555566666643
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.24 E-value=1.1e-09 Score=116.21 Aligned_cols=279 Identities=6% Similarity=-0.023 Sum_probs=149.0
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCC-----CCC
Q 003363 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN-----ESP 179 (826)
Q Consensus 105 s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~-----~~~ 179 (826)
++||++........ ......+|+++ ..+++....+..++ ...++|||||+.|++...... ...
T Consensus 28 ~~~~~~~~v~~~~~----~~g~~~~~~~d--~~~~~~~~~~~~~~------~~~~a~spDg~~i~~~~~~~~~~~~g~~d 95 (368)
T d1mdah_ 28 GAISRRSHITLPAY----FAGTTENWVSC--AGCGVTLGHSLGAF------LSLAVAGHSGSDFALASTSFARSAKGKRT 95 (368)
T ss_dssp CCCTTEEEEEECTT----TCSSEEEEEEE--TTTTEEEEEEEECT------TCEEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred CCCCcceeEEeecc----CCCcceEEEEe--CCCCcEEEEEeCCC------CCcceECCCCCEEEEEcccCccccccccC
Confidence 57777654332211 12345677765 44445444443432 346899999999999864311 122
Q ss_pred eEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcc
Q 003363 180 IQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 257 (826)
Q Consensus 180 ~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (826)
..+.+| ..++....+.++..... .....-..+.|||||++|++....+
T Consensus 96 ~~v~v~D~~t~~~~~~i~~p~~~~~--~~g~~p~~~a~SpDGk~l~va~~~~---------------------------- 145 (368)
T d1mdah_ 96 DYVEVFDPVTFLPIADIELPDAPRF--SVGPRVHIIGNCASSACLLFFLFGS---------------------------- 145 (368)
T ss_dssp EEEEEECTTTCCEEEEEEETTSCSC--CBSCCTTSEEECTTSSCEEEEECSS----------------------------
T ss_pred CeEEEEECCCCcEeeeecCCcccee--cccCCccceEECCCCCEEEEEeCCC----------------------------
Confidence 345555 34455555544322110 0011124789999999998764322
Q ss_pred eeecCCCccCCCccCceEEEEEccCCceEeccCCCCCC------ccceEEEeeCCCCCccEEEEEeecCccee-------
Q 003363 258 DWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL------SVGQVVWAPLNEGLHQYLVFVGWSSETRK------- 324 (826)
Q Consensus 258 ~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~------~~~~~~wSPDg~~~~~~lvf~~~~~~~~~------- 324 (826)
..|.+||+.++++......+... ....+.+++||+. +++.........
T Consensus 146 ---------------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~----~~~~~~~~~~~~~~~~~~~ 206 (368)
T d1mdah_ 146 ---------------SAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASL----AASDLAAAPAAAGIVGAQC 206 (368)
T ss_dssp ---------------SCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSC----EEEECCSSCCCCEECCCCS
T ss_pred ---------------CeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCE----EEEEecCCceeeeeeeccc
Confidence 46778888887765442122211 2234567888886 666543222110
Q ss_pred ---------------eeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCC-----------C--CccccC
Q 003363 325 ---------------LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-----------S--ISSAFF 376 (826)
Q Consensus 325 ---------------~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~-----------~--~~~~~~ 376 (826)
.+. ........++.++. ..+....+.. . ......
T Consensus 207 ~~~~~~~~~~~~~~~~g~-~~~~~~~~v~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 268 (368)
T d1mdah_ 207 TGAQNCSSQAAQANYPGM-LVWAVASSILQGDI-----------------PAAGATMKAAIDGNESGRKADNFRSAGFQM 268 (368)
T ss_dssp CTTSCBCSCCEEETTTTE-EEECBSSCCEEEEC-----------------CSSCCEEECCCCSSCTHHHHTTEEECSSSC
T ss_pred ccccccceeecccccCcE-EEEecCCCEEEEee-----------------cCCceEEEeecccccceeeeeeecCCCcee
Confidence 000 01122335666665 2222222111 0 112345
Q ss_pred ceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCC
Q 003363 377 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGC 456 (826)
Q Consensus 377 p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~ 456 (826)
..++|||+.++......... ......+|+++|..+++...... ... ....+.|+|||+
T Consensus 269 ~a~~~~~~~~~v~~~~~~~~--~~~~~~~v~v~D~~t~~~~~~~~-~~~-------------------~~~~~a~spDG~ 326 (368)
T d1mdah_ 269 VAKLKNTDGIMILTVEHSRS--CLAAAENTSSVTASVGQTSGPIS-NGH-------------------DSDAIIAAQDGA 326 (368)
T ss_dssp EEEETTTTEEEEEEEECSSC--TTSCEEEEEEEESSSCCEEECCE-EEE-------------------EECEEEECCSSS
T ss_pred EEEcCCCCEEEEEecCCCce--eecCCceEEEEECCCCcEeEEec-CCC-------------------ceeEEEECCCCC
Confidence 78999999877665443211 11234679999998876422111 000 123578999998
Q ss_pred EEEEEEEeCCeEEEEEEECCCCcEEEecC
Q 003363 457 TMLLSSIWGSSQVIISVNVSSGELLRITP 485 (826)
Q Consensus 457 ~l~~~~~~~~~~~l~~vdl~tg~~~~lt~ 485 (826)
.++|.+. .+...|+.+|..+|+..+..+
T Consensus 327 ~~ly~s~-~~~~~v~v~D~~tgk~~~~i~ 354 (368)
T d1mdah_ 327 SDNYANS-AGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp CEEEEEE-TTTTEEEEEESSSCEEEEECC
T ss_pred EEEEEEe-CCCCeEEEEECCCCCEEEEEE
Confidence 7655554 344578889999998765443
|
| >d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=99.23 E-value=8.1e-11 Score=121.99 Aligned_cols=230 Identities=15% Similarity=0.170 Sum_probs=136.2
Q ss_pred CCCCcEEEEEcCCCCCCCC------ccc-hHH---HHHHHHCCcEEEEECCCCCCCCchhhhhcCCC--------CCCcc
Q 003363 589 CSCDPLIVVLHGGPHSVSL------SSY-SKS---LAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG--------KVGSQ 650 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~------~~~-~~~---~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~--------~~~~~ 650 (826)
..+-++||++|+-.++... ..| ... -..+--..|.||++|+.|++ +|.+....... .....
T Consensus 36 ~~~~NaVlv~h~~tg~~~~~~~~~~~gWW~~liG~g~alDt~kyfVI~~n~lG~~-~gSs~p~s~~p~tg~~~g~~FP~i 114 (357)
T d2b61a1 36 DEKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGC-KGTTGPSSINPQTGKPYGSQFPNI 114 (357)
T ss_dssp TTCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCS-SSSSCTTSBCTTTSSBCGGGCCCC
T ss_pred CCCCCEEEEcCCCCccccccccCCCCCcHHHhcCCCCccCCCceEEEEecccCCc-cccCCcCCCCCCCCCCCCcccccc
Confidence 3456899999984433211 112 111 12333456999999999854 22222111111 12345
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcE-EEEEecchHHHHHHHHHhCCCceeEEEecCCccchh-------h-h-ccCCCCCCc
Q 003363 651 DVNDVLTAIDHVIDMGLANPSKV-TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-------L-M-VGTTDIPDW 720 (826)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv-~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~-------~-~-~~~~~~~~~ 720 (826)
.+.|+.++-..|+++ +..+|+ +++|.||||+.|+..+.++|++++.+|++++..... . . .....-+.|
T Consensus 115 ti~D~v~aq~~Ll~~--LGI~~l~~viG~SmGGmqAl~wa~~~Pd~v~~~i~i~~~a~~s~~~~~~~~~~~~aI~~Dp~~ 192 (357)
T d2b61a1 115 VVQDIVKVQKALLEH--LGISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSSIYFSAEAIGFNHVMRQAVINDPNF 192 (357)
T ss_dssp CHHHHHHHHHHHHHH--TTCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSSCCHHHHHHHHHHHHHHHTSTTC
T ss_pred hhHHHHHHHHHHHHH--hCcceEEEEecccHHHHHHHHHHHhhhHHHhhhcccccccccchhHHHHHHHHHHHHHcCCCC
Confidence 688999998888877 445777 788999999999999999999999998887632110 0 0 000000111
Q ss_pred h------------------------------hhhhccCcCCc---cCCCCCChhhHH-----H----------------H
Q 003363 721 C------------------------------YVESYGSKGKD---SFTESPSVEDLT-----R----------------F 746 (826)
Q Consensus 721 ~------------------------------~~~~~~~~~~~---~~~~~~~~~~~~-----~----------------~ 746 (826)
. +...++..... .+......+.+- . +
T Consensus 193 ~~G~Y~~~~~p~~GL~~Ar~~a~~ty~s~~~~~~~f~r~~~~~~~~~~~~~~vesyL~~~g~kf~~rfDan~yl~l~~a~ 272 (357)
T d2b61a1 193 NGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWGDYFQVESYLSYQGKKFLERFDANSYLHLLRAL 272 (357)
T ss_dssp GGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBCTTCCTTSCCBHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCcccCCCchhHHHHHHHHHHhhccCHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHhhCCHHHHHHHHHHh
Confidence 0 00111110000 000000001000 0 0
Q ss_pred hhcCc-------ccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCC-CCCCCCCCCHHHHHHHHH
Q 003363 747 HSKSP-------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND-VHGIERPQSDFESFLNIG 818 (826)
Q Consensus 747 ~~~sp-------~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~-~H~~~~~~~~~~~~~~i~ 818 (826)
...++ ...+.+|++|+|+|..+.|...|+++.+++++.|++.+++++++.++.. ||.-...+ ..++...|.
T Consensus 273 ~~~D~~~~~~~l~~aL~~I~a~vLvi~~~sD~lFpp~~~~~~a~~l~~~~~~v~~~~I~S~~GHdafL~e-~~~~~~~I~ 351 (357)
T d2b61a1 273 DMYDPSLGYENVKEALSRIKARYTLVSVTTDQLFKPIDLYKSKQLLEQSGVDLHFYEFPSDYGHDAFLVD-YDQFEKRIR 351 (357)
T ss_dssp HHCCTTTTSSCHHHHHTTCCSEEEEEEETTCSSSCHHHHHHHHHHHHHTTCEEEEEEECCTTGGGHHHHC-HHHHHHHHH
T ss_pred hhcccccccccHHHHHhhcCCCEEEEEeCCccccCHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCcC-HHHHHHHHH
Confidence 11111 1236889999999999999999999999999999999999999999875 77522222 235556677
Q ss_pred HHHH
Q 003363 819 LWFK 822 (826)
Q Consensus 819 ~w~~ 822 (826)
+||.
T Consensus 352 ~fL~ 355 (357)
T d2b61a1 352 DGLA 355 (357)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 7775
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.21 E-value=1.4e-09 Score=117.80 Aligned_cols=306 Identities=8% Similarity=0.009 Sum_probs=158.8
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003363 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (826)
Q Consensus 102 ~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (826)
+..+.|.+.+.+..... ...+.++++.+. .....+... ..+...+|||||++|+..... + .
T Consensus 24 ~~~~~d~~~~~~V~~~~-------dg~v~vwD~~t~-~~~~~l~~g------~~~~~vafSPDGk~l~~~~~d--~---~ 84 (426)
T d1hzua2 24 QLNDLDLPNLFSVTLRD-------AGQIALVDGDSK-KIVKVIDTG------YAVHISRMSASGRYLLVIGRD--A---R 84 (426)
T ss_dssp CCSCCCGGGEEEEEETT-------TTEEEEEETTTC-SEEEEEECC------SSEEEEEECTTSCEEEEEETT--S---E
T ss_pred ccccCCCCeEEEEEEcC-------CCEEEEEECCCC-cEEEEEeCC------CCeeEEEECCCCCEEEEEeCC--C---C
Confidence 34567878777654332 346666665322 222233222 247789999999999765432 2 3
Q ss_pred EEEe--cCCceeEEEe--cCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcc
Q 003363 182 FELW--SQSQLEKEFH--VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 257 (826)
Q Consensus 182 ~~i~--~~~~~~~~~~--~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (826)
..+| ..++...+.. ...+.++.+ ..+.|||||++|+..+...
T Consensus 85 v~vwd~~t~~~~~~~~i~~~~~~~~~~------~s~~~spDG~~l~v~~~~~---------------------------- 130 (426)
T d1hzua2 85 IDMIDLWAKEPTKVAEIKIGIEARSVE------SSKFKGYEDRYTIAGAYWP---------------------------- 130 (426)
T ss_dssp EEEEETTSSSCEEEEEEECCSEEEEEE------ECCSTTCTTTEEEEEEEES----------------------------
T ss_pred EEEEEccCCceeEEEEEeCCCCCcceE------EeeeecCCCCEEEEeecCC----------------------------
Confidence 4455 3344333322 222333333 5778999999988765432
Q ss_pred eeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCcc-----------ceEEEeeCCCCCccEEEEEeecCcceeee
Q 003363 258 DWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSV-----------GQVVWAPLNEGLHQYLVFVGWSSETRKLG 326 (826)
Q Consensus 258 ~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~-----------~~~~wSPDg~~~~~~lvf~~~~~~~~~~g 326 (826)
..+.+||..++++..+. ......+ ..+..++|++. +++...
T Consensus 131 ---------------~~v~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~s~d~~~----~~~~~~-------- 182 (426)
T d1hzua2 131 ---------------PQFAIMDGETLEPKQIV-STRGMTVDTQTYHPEPRVAAIIASHEHPE----FIVNVK-------- 182 (426)
T ss_dssp ---------------SEEEEEETTTCCEEEEE-ECCEECSSSCCEESCCCEEEEEECSSSSE----EEEEET--------
T ss_pred ---------------CeEEEEcCCccceeEEe-eccCCCccceeecCCCceeEEEECCCCCE----EEEecC--------
Confidence 57888898888766542 0111112 23455555554 443321
Q ss_pred eeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcce--ecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccc
Q 003363 327 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV--NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 404 (826)
Q Consensus 327 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~ 404 (826)
....+..++. ...... .............|+|||++++...... .
T Consensus 183 ------~~~~i~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~----------~ 229 (426)
T d1hzua2 183 ------ETGKVLLVNY-----------------KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNS----------N 229 (426)
T ss_dssp ------TTTEEEEEEC-----------------SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTC----------S
T ss_pred ------CCCeEEEEEe-----------------ccccceeeEEeccCCccEeeeECCCCcEEEeeeecc----------c
Confidence 1224555554 222211 1112333456788999999876554332 3
Q ss_pred eEEEEeCCCCCCCCccc--------------------------ceeeeeeeeeccCC----------CCCcccccCCCCC
Q 003363 405 SLHRIDWPTNGNFSSLE--------------------------KIVDVIPVVQCAEG----------DCFPGLYSSSILS 448 (826)
Q Consensus 405 ~l~~~d~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~----------~~f~g~~~~~~~~ 448 (826)
.+.+++..++....... ..+..+..+..... ..+.| ....+..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g-~~~~v~~ 308 (426)
T d1hzua2 230 KVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG-QGGGSLF 308 (426)
T ss_dssp EEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEEC-SSSCCCC
T ss_pred ceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEec-CCCceeE
Confidence 34455544433211000 00001111111000 00111 1234567
Q ss_pred CccccCCCEEEEEEEeC----CeEEEEEEECCCCcEE-Eec---------CCCCCeeeEEEeecCCEEEEEEeC-CCCCC
Q 003363 449 NPWLSDGCTMLLSSIWG----SSQVIISVNVSSGELL-RIT---------PAESNFSWSLLTLDGDNIIAVSSS-PVDVP 513 (826)
Q Consensus 449 ~~ws~Dg~~l~~~~~~~----~~~~l~~vdl~tg~~~-~lt---------~~~~~~~~~~~s~dg~~l~~~~s~-~~~p~ 513 (826)
++|+|||++|++..... ....|..+|+++++.. .+. .....+....|||||+++++...+ .....
T Consensus 309 v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~ 388 (426)
T d1hzua2 309 IKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSS 388 (426)
T ss_dssp EECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCC
T ss_pred EEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCC
Confidence 88999999887643211 1235777788887632 221 222234456899999999876643 44555
Q ss_pred eEEEEeecc
Q 003363 514 QVKYGYFVD 522 (826)
Q Consensus 514 ~l~~~~~~~ 522 (826)
.|.+.|..+
T Consensus 389 ~i~v~D~~T 397 (426)
T d1hzua2 389 ALVVVDDKT 397 (426)
T ss_dssp EEEEEETTT
T ss_pred eEEEEECCC
Confidence 677777543
|
| >d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Leptospira interrogans [TaxId: 173]
Probab=99.21 E-value=4.6e-10 Score=116.49 Aligned_cols=241 Identities=12% Similarity=0.128 Sum_probs=140.4
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC----------ccc-hH---HHHHHHHCCcEEEEECCCCCCCCchhhh
Q 003363 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL----------SSY-SK---SLAFLSSVGYSLLIVNYRGSLGFGEEAL 640 (826)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~----------~~~-~~---~~~~la~~G~~Vl~~d~rG~~g~G~~~~ 640 (826)
.+.+..|--. ...+.++||++|+-.++... ..| .. .-..+--.-|.||++|.-|++ +|.+..
T Consensus 28 ~l~Y~t~G~l---n~~~~NaVlv~h~~tG~~~~~g~~~~~~~~~gww~~liG~g~~lDt~~yfVI~~n~lG~~-~~ss~~ 103 (362)
T d2pl5a1 28 VIAYETYGTL---SSSKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGGC-KGSSGP 103 (362)
T ss_dssp EEEEEEEECC---CTTSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCS-SSSSST
T ss_pred eEEEEeeecc---CCCCCCEEEECCCCCcchhccccCCccCCCcchHHHhcCCCCccCccccEEEeeccccCc-ccccCc
Confidence 3444444432 23446899999984433211 111 10 112333455999999999854 332221
Q ss_pred hcCC-C-------CCCcchHHHHHHHHHHHHHcCCCCCCcEE-EEEecchHHHHHHHHHhCCCceeEEEecCCccchh--
Q 003363 641 QSLP-G-------KVGSQDVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-- 709 (826)
Q Consensus 641 ~~~~-~-------~~~~~~~~D~~~~i~~l~~~~~~d~~rv~-l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~-- 709 (826)
.... . ......+.|+.++-+.|+++-.| +++. ++|.||||+.|+..|..||++++.+|.+++.....
T Consensus 104 ~s~~p~~~~~yg~~fP~~t~~D~v~~~~~ll~~LGI--~~l~~viG~SmGGmqAl~wA~~yPd~v~~~v~ia~sa~~s~~ 181 (362)
T d2pl5a1 104 LSIHPETSTPYGSRFPFVSIQDMVKAQKLLVESLGI--EKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMASTAEHSAM 181 (362)
T ss_dssp TSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHTTC--SSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSBCCHH
T ss_pred cccccccccccCcCCccchhHHHHHHHHHHHHHhCc--CeeEEEeehhHHHHHHHHHHHhCchHhhhhcccccccccCHH
Confidence 1111 1 12234688999988888887434 5665 88999999999999999999999999887632210
Q ss_pred ----------hhc-------cC--CCCCCc-----------------hhhhhccCcC-----------Cc--------cC
Q 003363 710 ----------LMV-------GT--TDIPDW-----------------CYVESYGSKG-----------KD--------SF 734 (826)
Q Consensus 710 ----------~~~-------~~--~~~~~~-----------------~~~~~~~~~~-----------~~--------~~ 734 (826)
... +. ...|.- .+...++... .+ .+
T Consensus 182 ~~~~~~~~~~aI~~Dp~~~~G~Y~~~~P~~GL~~AR~~~~~~y~s~~~~~~~f~~~~~~~~~~~~~~~ve~yl~~~g~k~ 261 (362)
T d2pl5a1 182 QIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYLIYQGESF 261 (362)
T ss_dssp HHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGGGSTTCCS
T ss_pred HHHHHHHHHHHHhcCCccccCCcccCChhHHHHHHHHHHHHHHcCchhhhhhhccccccccccchhHHHHHHHHHHHHHH
Confidence 000 00 000000 0001111000 00 00
Q ss_pred CCCCChhh----HHHHhhcCcc------cccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCC-CCCC
Q 003363 735 TESPSVED----LTRFHSKSPI------SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN-DVHG 803 (826)
Q Consensus 735 ~~~~~~~~----~~~~~~~sp~------~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~-~~H~ 803 (826)
...-.... ...+...++. ..+.+|++|+|+|..+.|...|+++.+++++.|++++++++++.++. .||.
T Consensus 262 ~~rfDan~yl~l~~a~~~~Di~~~~~l~~aL~~I~AkvLvi~~~sD~lFpp~~~~~~a~~l~~a~~~v~~~eI~S~~GHd 341 (362)
T d2pl5a1 262 VDRFDANSYIYVTKALDHYSLGKGKELTAALSNATCRFLVVSYSSDWLYPPAQSREIVKSLEAADKRVFYVELQSGEGHD 341 (362)
T ss_dssp SSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSCHHHHHHHHHHHHHTTCCEEEEEECCCBSSG
T ss_pred HhcCCHHHHHHHHhhhhcccccccccHHHHHhhCCCCEEEEEeCcccCcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcc
Confidence 00000000 0111112221 23789999999999999999999999999999999999999988865 4675
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 003363 804 IERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 804 ~~~~~~~~~~~~~i~~w~~ 822 (826)
-...+.. ++...|.+||+
T Consensus 342 aFL~e~~-~~~~~I~~FL~ 359 (362)
T d2pl5a1 342 SFLLKNP-KQIEILKGFLE 359 (362)
T ss_dssp GGGSCCH-HHHHHHHHHHH
T ss_pred hhccCHH-HHHHHHHHHHc
Confidence 3333333 56677778875
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.19 E-value=3.8e-10 Score=120.16 Aligned_cols=264 Identities=15% Similarity=0.055 Sum_probs=136.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCc---------cccccCCCcccceeecCCCCeE
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTV---------HGSVYADGWFEGISWNSDETLI 222 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~---------~g~v~~~~~~~~~~wSPDg~~i 222 (826)
..+...+|||||++||...+ + .+.+|+ .++........... ......+..+..++|||||+.|
T Consensus 63 ~~V~~l~fs~dg~~lasg~d---~---~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l 136 (388)
T d1erja_ 63 SVVCCVKFSNDGEYLATGCN---K---TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136 (388)
T ss_dssp SCCCEEEECTTSSEEEEECB---S---CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CcEEEEEECCCCCEEEEEeC---C---eEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcc
Confidence 35889999999999987532 2 356662 33332222110000 0000112234789999999999
Q ss_pred EEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEE
Q 003363 223 AYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVW 302 (826)
Q Consensus 223 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~w 302 (826)
+..+.+.... .|+............+........+.++....+.+.....+.+||..+...... ...........|
T Consensus 137 ~s~~~dg~v~--i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~ 212 (388)
T d1erja_ 137 ATGAEDRLIR--IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT--LSIEDGVTTVAV 212 (388)
T ss_dssp EEEETTSCEE--EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEE
T ss_pred eecccccccc--cccccccccccccccccccccccccccccccccccccceeeeeeeccccccccc--cccccccccccc
Confidence 9888766433 222111111111122233333445555544445555678899999988776554 222223334555
Q ss_pred ee-CCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ce-------ecCCCCcc
Q 003363 303 AP-LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VV-------NLTESISS 373 (826)
Q Consensus 303 SP-Dg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~-------~Lt~~~~~ 373 (826)
+| |++. |+..+ .+..|+.+|. .++. .. .+..+...
T Consensus 213 ~~~~~~~----l~~~~---------------~d~~i~i~~~-----------------~~~~~~~~~~~~~~~~~~h~~~ 256 (388)
T d1erja_ 213 SPGDGKY----IAAGS---------------LDRAVRVWDS-----------------ETGFLVERLDSENESGTGHKDS 256 (388)
T ss_dssp CSTTCCE----EEEEE---------------TTSCEEEEET-----------------TTCCEEEEEC------CCCSSC
T ss_pred cCCCCCe----EEEEc---------------CCCeEEEeec-----------------ccCccceeeccccccccCCCCC
Confidence 55 6665 55444 2236777776 2222 12 22334556
Q ss_pred ccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCcccc
Q 003363 374 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 453 (826)
Q Consensus 374 ~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~ 453 (826)
+....|+|||++|+..+.+ ..|.+||+.++................... .+...+..+.|+|
T Consensus 257 v~~l~~s~~~~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~s~ 318 (388)
T d1erja_ 257 VYSVVFTRDGQSVVSGSLD-----------RSVKLWNLQNANNKSDSKTPNSGTCEVTYI-------GHKDFVLSVATTQ 318 (388)
T ss_dssp EEEEEECTTSSEEEEEETT-----------SEEEEEEC---------------CEEEEEE-------CCSSCEEEEEECG
T ss_pred EEEEEECCCCCEEEEEECC-----------CcEEEEeccCCccccccccccccceeeecc-------cccceEEEEEECC
Confidence 7788999999998766543 458889987755432211111000000000 0112345678999
Q ss_pred CCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003363 454 DGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (826)
Q Consensus 454 Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt 484 (826)
||+.|+ +...++ .|+.+|+.+++.....
T Consensus 319 ~~~~l~-sg~~dg--~i~vwd~~~~~~~~~l 346 (388)
T d1erja_ 319 NDEYIL-SGSKDR--GVLFWDKKSGNPLLML 346 (388)
T ss_dssp GGCEEE-EEETTS--EEEEEETTTCCEEEEE
T ss_pred CCCEEE-EEeCCC--EEEEEECCCCcEEEEE
Confidence 998664 444344 4666788888765443
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.18 E-value=4.7e-10 Score=121.70 Aligned_cols=119 Identities=15% Similarity=0.176 Sum_probs=68.3
Q ss_pred ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCccccc
Q 003363 364 VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 443 (826)
Q Consensus 364 ~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~ 443 (826)
...|..+.......+|||||++|+....... +| .....|.+||+.+++.... +.++.....-.. ..
T Consensus 296 ~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~--s~--~~~~tv~vwd~~t~~~~~~------~~~~~~~~~~~~----~~ 361 (426)
T d1hzua2 296 VAELQGQGGGSLFIKTHPKSSHLYVDTTFNP--DA--RISQSVAVFDLKNLDAKYQ------VLPIAEWADLGE----GA 361 (426)
T ss_dssp EEEEECSSSCCCCEECCTTCSEEEECCTTCS--SH--HHHTCEEEEETTCTTSCCE------EECHHHHHCCCS----SC
T ss_pred eEEEecCCCceeEEEcCCCCceEEEeecCCC--Cc--ccCCEEEEEECCCCCcCeE------EeccchhcccCC----CC
Confidence 3445555666788999999999985432210 01 1235699999988765321 111000000000 11
Q ss_pred CCCCCCccccCCCEEEEEEEe--CCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCE
Q 003363 444 SSILSNPWLSDGCTMLLSSIW--GSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDN 501 (826)
Q Consensus 444 ~~~~~~~ws~Dg~~l~~~~~~--~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~ 501 (826)
..+..++|||||++|+++... .....|.++|.+|+++.....+.. .++|+|++
T Consensus 362 ~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~-----~~tp~Gk~ 416 (426)
T d1hzua2 362 KRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR-----LITPTGKF 416 (426)
T ss_dssp CCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT-----CCSEEEEE
T ss_pred ccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC-----ccCCCceE
Confidence 123356799999999876532 245568888999998876655443 23455543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.16 E-value=1.3e-09 Score=115.59 Aligned_cols=279 Identities=12% Similarity=-0.014 Sum_probs=156.8
Q ss_pred cEEEEeCCCCCeEEEEe-cCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVR-NPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~-~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
....+.+|||+...... ....+..++|.++ ..++....+..... ..+.|||||+.|++......
T Consensus 22 ~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~-----------~~~a~spDg~~i~~~~~~~~--- 87 (368)
T d1mdah_ 22 SCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL-----------SLAVAGHSGSDFALASTSFA--- 87 (368)
T ss_dssp CBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT-----------CEEEECTTSSCEEEEEEEET---
T ss_pred ccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCC-----------CcceECCCCCEEEEEcccCc---
Confidence 34456789999865443 2233556788888 56666666554332 47899999999999764321
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCC------CCccceEEEeeCCC
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK------SLSVGQVVWAPLNE 307 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~------~~~~~~~~wSPDg~ 307 (826)
....+.+...|.+||..++++......+. ......++|||||+
T Consensus 88 -------------------------------~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk 136 (368)
T d1mdah_ 88 -------------------------------RSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136 (368)
T ss_dssp -------------------------------TTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS
T ss_pred -------------------------------cccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCC
Confidence 11223355779999999988654310111 11345789999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceec-CCC-------CccccCcee
Q 003363 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TES-------ISSAFFPRF 379 (826)
Q Consensus 308 ~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-t~~-------~~~~~~p~~ 379 (826)
. |++... .+..++++|+ .+++.... ... .+......+
T Consensus 137 ~----l~va~~--------------~~~~v~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 181 (368)
T d1mdah_ 137 C----LLFFLF--------------GSSAAAGLSV-----------------PGASDDQLTKSASCFHIHPGAAATHYLG 181 (368)
T ss_dssp C----EEEEEC--------------SSSCEEEEEE-----------------TTTEEEEEEECSSCCCCEEEETTEEECC
T ss_pred E----EEEEeC--------------CCCeEEEEEC-----------------CCCcEeEEeeccCcceEccCCCceEEEE
Confidence 9 887652 2347888887 44443222 111 112344567
Q ss_pred cCCCCEEEEEeccCCCCC--------CCC-----------------cccceEEEEeCCCCCCCCcccceeeeeeeeeccC
Q 003363 380 SPDGKFLVFLSAKSSVDS--------GAH-----------------SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAE 434 (826)
Q Consensus 380 SpDG~~l~f~s~~~~~~~--------g~~-----------------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 434 (826)
++||+.+++......... ..+ ....+++.+++..+....+. .+....
T Consensus 182 ~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~--------~~~~~~ 253 (368)
T d1mdah_ 182 SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKA--------AIDGNE 253 (368)
T ss_dssp CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEEC--------CCCSSC
T ss_pred cCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEe--------eccccc
Confidence 888887766543321100 000 01123444444433221100 000000
Q ss_pred CCCC-cccccCCCCCCccccCCCEEEEEEEeC------CeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEe
Q 003363 435 GDCF-PGLYSSSILSNPWLSDGCTMLLSSIWG------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 507 (826)
Q Consensus 435 ~~~f-~g~~~~~~~~~~ws~Dg~~l~~~~~~~------~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s 507 (826)
.... .+....+...+.+++|++.+|+..... ....++.+|..+++...............|++||+.++++..
T Consensus 254 ~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~ 333 (368)
T d1mdah_ 254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANS 333 (368)
T ss_dssp THHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEE
T ss_pred ceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEe
Confidence 0000 000111234577899999888776543 245799999999986654433333444689999987666665
Q ss_pred CCCCCCeEEEEeecccC
Q 003363 508 SPVDVPQVKYGYFVDKA 524 (826)
Q Consensus 508 ~~~~p~~l~~~~~~~~~ 524 (826)
..+ ..|+++|..+++
T Consensus 334 ~~~--~~v~v~D~~tgk 348 (368)
T d1mdah_ 334 AGT--EVLDIYDAASDQ 348 (368)
T ss_dssp TTT--TEEEEEESSSCE
T ss_pred CCC--CeEEEEECCCCC
Confidence 443 358888876553
|
| >d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Surfactin synthetase, SrfA species: Bacillus subtilis [TaxId: 1423]
Probab=99.14 E-value=2.8e-11 Score=119.14 Aligned_cols=201 Identities=10% Similarity=-0.003 Sum_probs=112.8
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCC
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (826)
.++.++||++||..++ ...|..++..|. +|.|+.+|++|. +. .++++.+.++.+ .
T Consensus 14 ~~~~~~l~~lhg~~g~--~~~~~~la~~L~--~~~v~~~~~~g~---~~-------------~a~~~~~~i~~~-----~ 68 (230)
T d1jmkc_ 14 QDQEQIIFAFPPVLGY--GLMYQNLSSRLP--SYKLCAFDFIEE---ED-------------RLDRYADLIQKL-----Q 68 (230)
T ss_dssp TTCSEEEEEECCTTCC--GGGGHHHHHHCT--TEEEEEECCCCS---TT-------------HHHHHHHHHHHH-----C
T ss_pred CCCCCeEEEEcCCCCC--HHHHHHHHHHCC--CCEEeccCcCCH---HH-------------HHHHHHHHHHHh-----C
Confidence 4556899999997765 567888888884 799999999983 21 245555555443 2
Q ss_pred CCCcEEEEEecchHHHHHHHHHhCCC---ceeEEEecCCccchhhh--ccCCCCCCchhhhhccCcCCccCCCCCChhhH
Q 003363 669 NPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLALM--VGTTDIPDWCYVESYGSKGKDSFTESPSVEDL 743 (826)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (826)
...++.|+|||+||.+++.+|.++|+ .+..++...+....... ................. ...........
T Consensus 69 ~~~~~~lvGhS~GG~vA~~~A~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 144 (230)
T d1jmkc_ 69 PEGPLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNVNR----DNEALNSEAVK 144 (230)
T ss_dssp CSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCEECCCC--------CCHHHHHHHTT----TCSGGGSHHHH
T ss_pred CCCcEEEEeeccChHHHHHHHHhhhhhCccceeeecccccCccchhhhhhhhhhhhhhhhhhccc----cccccccHHHH
Confidence 34679999999999999999887654 34444444432211000 00000000000000000 00000011110
Q ss_pred H--------HHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCC-CHHHHH
Q 003363 744 T--------RFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ-SDFESF 814 (826)
Q Consensus 744 ~--------~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~-~~~~~~ 814 (826)
. .+..........++++|+++++|++|..++.... .+.+ .....++++++++ +|.....+ ...++.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~i~~p~l~i~g~~D~~~~~~~~-~w~~---~~~~~~~~~~i~g-~H~~ml~~~~~~~va 219 (230)
T d1jmkc_ 145 HGLKQKTHAFYSYYVNLISTGQVKADIDLLTSGADFDIPEWLA-SWEE---ATTGAYRMKRGFG-THAEMLQGETLDRNA 219 (230)
T ss_dssp HHHHHHHHHHHHHHHHCCCCSCBSSEEEEEECSSCCCCCTTEE-CSGG---GBSSCEEEEECSS-CGGGTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccccccCcceeeeecCCcccchhHH-HHHH---hccCCcEEEEEcC-CChhhcCCccHHHHH
Confidence 0 0111112234567889999999999998875432 1111 1223588889986 89754332 334566
Q ss_pred HHHHHHHHH
Q 003363 815 LNIGLWFKK 823 (826)
Q Consensus 815 ~~i~~w~~~ 823 (826)
+.|.+||++
T Consensus 220 ~~I~~~L~~ 228 (230)
T d1jmkc_ 220 GILLEFLNT 228 (230)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 677777764
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.13 E-value=2.6e-09 Score=109.00 Aligned_cols=268 Identities=12% Similarity=0.066 Sum_probs=149.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
+.+...+|||||+.||..+.++ .+.+| ..++..+.+.. ..+.| ..+.|+|++..++........
T Consensus 18 ~~I~~l~~sp~~~~l~s~s~Dg-----~i~iWd~~~~~~~~~~~~---h~~~V------~~~~~~~~~~~~~~~~~~~~~ 83 (317)
T d1vyhc1 18 SPVTRVIFHPVFSVMVSASEDA-----TIKVWDYETGDFERTLKG---HTDSV------QDISFDHSGKLLASCSADMTI 83 (317)
T ss_dssp SCEEEEEECSSSSEEEEEESSS-----CEEEEETTTCCCCEEECC---CSSCE------EEEEECTTSSEEEEEETTSCC
T ss_pred CCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCCEEEEEeC---CCCcE------EEEeeeccccccccccccccc
Confidence 4588999999999998776543 46777 34444444321 22223 789999999999887765533
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
.. +.............+........+.++....++......+.+||+.+++..... .........++|+||++.
T Consensus 84 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--- 157 (317)
T d1vyhc1 84 KL--WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTL--- 157 (317)
T ss_dssp CE--EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSE---
T ss_pred cc--ccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEE-ccCCCcceeeecccCCCE---
Confidence 21 111111111111222222334456666444455556788999999888754431 223345678899999997
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCC-------
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK------- 384 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~------- 384 (826)
|+..+ .+..|+.+++. .......+..+........|+|++.
T Consensus 158 -l~~~~---------------~d~~v~~~~~~----------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 205 (317)
T d1vyhc1 158 -IASCS---------------NDQTVRVWVVA----------------TKECKAELREHRHVVECISWAPESSYSSISEA 205 (317)
T ss_dssp -EEEEE---------------TTSCEEEEETT----------------TCCEEEEECCCSSCEEEEEECCSCGGGGGGGC
T ss_pred -EEEEe---------------CCCeEEEEeec----------------cceeeEEEecCCCCceEEEEeeccccceeecc
Confidence 66555 22356666652 1122233333333344444555443
Q ss_pred -------------EEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCcc
Q 003363 385 -------------FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 451 (826)
Q Consensus 385 -------------~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~w 451 (826)
.++..+. ...|.++|+.++........ +...+..+.|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~-----------d~~i~~~~~~~~~~~~~~~~-------------------~~~~v~~~~~ 255 (317)
T d1vyhc1 206 TGSETKKSGKPGPFLLSGSR-----------DKTIKMWDVSTGMCLMTLVG-------------------HDNWVRGVLF 255 (317)
T ss_dssp CSCC-------CCEEEEEET-----------TSEEEEEETTTTEEEEEEEC-------------------CSSCEEEEEE
T ss_pred ccceeeeeccCCceeEeccC-----------CCEEEEEECCCCcEEEEEeC-------------------CCCCEEEEEE
Confidence 3322221 24578888776543211000 1112346789
Q ss_pred ccCCCEEEEEEEeCCeEEEEEEECCCCcEE-EecCCCCCeeeEEEeecCCEEEEEE
Q 003363 452 LSDGCTMLLSSIWGSSQVIISVNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 452 s~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~-~lt~~~~~~~~~~~s~dg~~l~~~~ 506 (826)
+|||+.|+ +...++ .|..+|+.+++.. .+......+....|+++++.|+...
T Consensus 256 ~~~~~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s 308 (317)
T d1vyhc1 256 HSGGKFIL-SCADDK--TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 308 (317)
T ss_dssp CSSSSCEE-EEETTT--EEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred CCCCCEEE-EEECCC--eEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 99998664 444444 4566677777644 4444344556667888888665443
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Probab=99.13 E-value=2.1e-11 Score=124.56 Aligned_cols=126 Identities=17% Similarity=0.141 Sum_probs=83.3
Q ss_pred CCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEE-ecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCC---hh
Q 003363 666 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAA-ARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS---VE 741 (826)
Q Consensus 666 ~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 741 (826)
..+|++||+|+|+|+||+|++.++..+|++|++++ ..++..- ... . ........ ....+. ..
T Consensus 6 y~iDp~rI~V~G~SsGG~mA~~la~a~sd~f~aga~vvAg~p~-~ca---~---~~~~~~~~-------~~~~~~~~~~~ 71 (318)
T d2d81a1 6 FNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPY-DCA---R---NQYYTSCM-------YNGYPSITTPT 71 (318)
T ss_dssp CCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCT-TTT---S---SSCGGGGS-------TTCCCCCHHHH
T ss_pred cCCCccceEEEEECHHHHHHHHHHHhcccceeeeEEEeccCch-hhh---c---ccchHHHh-------hcCCCCCcChh
Confidence 34899999999999999999999999999997433 3333210 000 0 00000000 001111 11
Q ss_pred h-HHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCC--CCEEEEEeCCCCCCCC
Q 003363 742 D-LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG--VETKVIVFPNDVHGIE 805 (826)
Q Consensus 742 ~-~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g--~~~~~~~~p~~~H~~~ 805 (826)
. .+.+...++.........|+||+||++|..||+.++++++++|++.+ .+++++.+++++|.+.
T Consensus 72 ~~~~~~~~~~i~~~~~~~~~pvll~hG~~D~~Vpp~~s~~l~~~l~~~~~~~~v~yv~~~gagH~fp 138 (318)
T d2d81a1 72 ANMKSWSGNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANVSYVTTTGAVHTFP 138 (318)
T ss_dssp HHHHHHBTTTBCCGGGGGGCEEEEEEETTCCSSCHHHHHHHHHHHTTTSCGGGEEEEEETTCCSSEE
T ss_pred HHHHHHhhcCCcchhccCCCCEEEEecCCCCCcCHHHHHHHHHHHHcCcCCCceEEEEeCCCCCCCC
Confidence 1 22222333333344456899999999999999999999999998864 4689999999999874
|
| >d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Picromycin polyketide synthase species: Streptomyces venezuelae [TaxId: 54571]
Probab=99.10 E-value=2.8e-11 Score=123.48 Aligned_cols=217 Identities=12% Similarity=0.114 Sum_probs=122.4
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHH-HHHHHHcC
Q 003363 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMG 666 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~ 666 (826)
.....|.+|++||.........|..++..|.. ++.|+++|++| +|.... .........++++.+. ++.+.+.
T Consensus 56 ~~~~~~~l~c~~~~~~~g~~~~y~~la~~L~~-~~~V~al~~pG---~~~~~~--~~~~~~~~s~~~~a~~~~~~i~~~- 128 (283)
T d2h7xa1 56 RAEGRAVLVGCTGTAANGGPHEFLRLSTSFQE-ERDFLAVPLPG---YGTGTG--TGTALLPADLDTALDAQARAILRA- 128 (283)
T ss_dssp --CCCCEEEEECCCCTTCSTTTTHHHHHTTTT-TCCEEEECCTT---CCBC-----CBCCEESSHHHHHHHHHHHHHHH-
T ss_pred CCCCCceEEEeCCCCCCCCHHHHHHHHHhcCC-CceEEEEeCCC---CCCCCC--CccccccCCHHHHHHHHHHHHHHh-
Confidence 45567899999984322235577777777754 68999999999 433211 0112222345665554 3444443
Q ss_pred CCCCCcEEEEEecchHHHHHHHHHhC----CCceeEEEecCCccchhhhccCCCCCCch--hhhhccCcCCccCCCCCCh
Q 003363 667 LANPSKVTVVGGSHGGFLTTHLIGQA----PDKFVAAAARNPLCNLALMVGTTDIPDWC--YVESYGSKGKDSFTESPSV 740 (826)
Q Consensus 667 ~~d~~rv~l~G~S~GG~~a~~~a~~~----p~~~~a~v~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 740 (826)
.+..++.|+|||+||.+++.+|.+. ++.+.+++++.+........ ...+. ....... .........
T Consensus 129 -~~~~P~vL~GhS~GG~vA~e~A~~l~~~~g~~v~~LvL~d~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~ 200 (283)
T d2h7xa1 129 -AGDAPVVLLGHSGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEP----IEVWSRQLGEGLFA---GELEPMSDA 200 (283)
T ss_dssp -HTTSCEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCCCTTCCHH----HHHTHHHHHHHHHH---TCSSCCCHH
T ss_pred -cCCCceEEEEeccchHHHHHHHHhhHHHcCCCceEEEEecCCccccccc----hhhhhhhhHHHhhc---ccccccccH
Confidence 2346899999999999999988764 45688888876543211000 00000 0000000 000000000
Q ss_pred h--hHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 003363 741 E--DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIG 818 (826)
Q Consensus 741 ~--~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~ 818 (826)
. ....+...........+++|+|+++|++|..++......+.+.+ ...++++.+|| +|.....+....+.+.|.
T Consensus 201 ~l~a~~~~~~~~~~~~~~~~~~Pvl~i~g~~d~~~~~~~~~~w~~~~---~~~~~~~~v~G-~H~~ml~e~~~~vA~~i~ 276 (283)
T d2h7xa1 201 RLLAMGRYARFLAGPRPGRSSAPVLLVRASEPLGDWQEERGDWRAHW---DLPHTVADVPG-DHFTMMRDHAPAVAEAVL 276 (283)
T ss_dssp HHHHHHHHHHHHHSCCCCCCCSCEEEEEESSCSSCCCGGGCCCSCCC---SSCSEEEEESS-CTTHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccCCCeEEEEeCCCCCCCHHHHHHHHHhC---CCCcEEEEEcC-CCcccccCCHHHHHHHHH
Confidence 0 01111111111234568899999999999999887654433222 23478889987 686433355567778899
Q ss_pred HHHHH
Q 003363 819 LWFKK 823 (826)
Q Consensus 819 ~w~~~ 823 (826)
+||+.
T Consensus 277 ~~L~~ 281 (283)
T d2h7xa1 277 SWLDA 281 (283)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99875
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.08 E-value=2.1e-08 Score=103.52 Aligned_cols=263 Identities=10% Similarity=-0.007 Sum_probs=140.9
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
....+++||||++|+.....+ ..+..++ ..++............ .......++|||||++++..........
T Consensus 35 ~~~~i~~spDg~~l~v~~~~~---~~v~v~D~~t~~~~~~~~~~~~~~----~~~~~~~v~~s~dg~~l~~~~~~~~~~~ 107 (337)
T d1pbyb_ 35 TPMVPMVAPGGRIAYATVNKS---ESLVKIDLVTGETLGRIDLSTPEE----RVKSLFGAALSPDGKTLAIYESPVRLEL 107 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTT---TEEEEEETTTCCEEEEEECCBTTE----EEECTTCEEECTTSSEEEEEEEEEEECS
T ss_pred CccEEEECCCCCEEEEEECCC---CeEEEEECCCCcEEEEEecCCCcc----cccceeeEEEcCCCcEEEEeecCCccee
Confidence 356789999999887654322 2344444 4555555444432110 0012258899999999988765432110
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (826)
. ........+.++|..++++... ......+..++|+|||+. +
T Consensus 108 ~--------------------------------~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~----l 149 (337)
T d1pbyb_ 108 T--------------------------------HFEVQPTRVALYDAETLSRRKA--FEAPRQITMLAWARDGSK----L 149 (337)
T ss_dssp S--------------------------------CEEECCCEEEEEETTTTEEEEE--EECCSSCCCEEECTTSSC----E
T ss_pred e--------------------------------eccccccceeeccccCCeEEEe--ccccCCceEEEEcCCCCE----E
Confidence 0 0111346788999999887665 334445667899999998 7
Q ss_pred EEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEe---
Q 003363 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS--- 390 (826)
Q Consensus 314 vf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s--- 390 (826)
+..+. .++.+|. .+++...............++|+|..+....
T Consensus 150 ~~~~~-----------------~~~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
T d1pbyb_ 150 YGLGR-----------------DLHVMDP-----------------EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESS 195 (337)
T ss_dssp EEESS-----------------SEEEEET-----------------TTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTT
T ss_pred EEEcC-----------------Ccceeee-----------------ecCcEEEEeecCCccccceecCCcceeecccccc
Confidence 66541 3455665 3333222211112223344455554321111
Q ss_pred ----------ccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEE
Q 003363 391 ----------AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 460 (826)
Q Consensus 391 ----------~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~ 460 (826)
...............++++++.++........ + . ........+++++..++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-----~--------~~~~~~~~~~~~~~~~~~ 257 (337)
T d1pbyb_ 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR-----I-----M--------DVFYFSTAVNPAKTRAFG 257 (337)
T ss_dssp TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE-----E-----C--------SSCEEEEEECTTSSEEEE
T ss_pred ceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEec-----C-----C--------CcceEEEEecccceEEEE
Confidence 00000000111223456666655432110000 0 0 001224467888887654
Q ss_pred EEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 461 SSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 461 ~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
. ...+..+|+.+++...............|++||+.++....+ ..|.+.|..+.
T Consensus 258 ~-----~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~----~~i~v~D~~t~ 311 (337)
T d1pbyb_ 258 A-----YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGAL----GDLAAYDAETL 311 (337)
T ss_dssp E-----ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBS----SEEEEEETTTC
T ss_pred c-----cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCC----CcEEEEECCCC
Confidence 3 246788899998866554444445567899999988754322 35888886544
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.07 E-value=3.2e-09 Score=112.74 Aligned_cols=256 Identities=11% Similarity=0.033 Sum_probs=133.5
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
..+...+|||||++|+.....+ .+.+|+......+... .+..+.| ..+.|++++..++..+.+....
T Consensus 122 ~~V~~l~~s~~~~~l~s~~~dg-----~v~i~~~~~~~~~~~~-~~h~~~v------~~~~~~~~~~~~~~~~~~~~i~- 188 (388)
T d1erja_ 122 LYIRSVCFSPDGKFLATGAEDR-----LIRIWDIENRKIVMIL-QGHEQDI------YSLDYFPSGDKLVSGSGDRTVR- 188 (388)
T ss_dssp CBEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEE-CCCSSCE------EEEEECTTSSEEEEEETTSEEE-
T ss_pred CCEEEEEECCCCCcceeccccc-----cccccccccccccccc-ccccccc------cccccccccccccccccceeee-
Confidence 3478899999999998876543 4666743222222222 1222223 7889999999998876554322
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCcc-CCCccCceEEEEEccCCceEe-cc-----CCCCCCccceEEEeeCC
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGET-YAGKRQPSLFVININSGEVQA-VK-----GIPKSLSVGQVVWAPLN 306 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~-~~~~~~~~l~v~d~~~g~~~~-l~-----~~~~~~~~~~~~wSPDg 306 (826)
.|+......... ...........+.+.-+.. +++.....|.++|..+++... +. .......+..+.|+|||
T Consensus 189 -~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 266 (388)
T d1erja_ 189 -IWDLRTGQCSLT-LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG 266 (388)
T ss_dssp -EEETTTTEEEEE-EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS
T ss_pred -eeeccccccccc-cccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCC
Confidence 121110000000 0001111112222221332 234456789999998876543 21 01122356789999999
Q ss_pred CCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEE
Q 003363 307 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFL 386 (826)
Q Consensus 307 ~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l 386 (826)
+. |+..+ .+..|..+|+.......... .............+...+....|+|||++|
T Consensus 267 ~~----l~s~~---------------~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 323 (388)
T d1erja_ 267 QS----VVSGS---------------LDRSVKLWNLQNANNKSDSK----TPNSGTCEVTYIGHKDFVLSVATTQNDEYI 323 (388)
T ss_dssp SE----EEEEE---------------TTSEEEEEEC-------------------CEEEEEECCSSCEEEEEECGGGCEE
T ss_pred CE----EEEEE---------------CCCcEEEEeccCCccccccc----cccccceeeecccccceEEEEEECCCCCEE
Confidence 97 76655 22356777763111000000 000111122333445567889999999998
Q ss_pred EEEeccCCCCCCCCcccceEEEEeCCCCCCCCccccee-eeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC
Q 003363 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV-DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 465 (826)
Q Consensus 387 ~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~ 465 (826)
+..+.+ ..|++||+.+++......+.. .+..+. ......|+|||+. ++++..+
T Consensus 324 ~sg~~d-----------g~i~vwd~~~~~~~~~l~~H~~~V~~~~--------------~~~~~~~spd~~~-l~s~s~D 377 (388)
T d1erja_ 324 LSGSKD-----------RGVLFWDKKSGNPLLMLQGHRNSVISVA--------------VANGSSLGPEYNV-FATGSGD 377 (388)
T ss_dssp EEEETT-----------SEEEEEETTTCCEEEEEECCSSCEEEEE--------------ECSSCTTCTTCEE-EEEEETT
T ss_pred EEEeCC-----------CEEEEEECCCCcEEEEEeCCCCCEEEEE--------------EecCcccCCCCCE-EEEEeCC
Confidence 766644 459999998866532111111 111110 1124578999974 4566667
Q ss_pred CeEEEEEE
Q 003363 466 SSQVIISV 473 (826)
Q Consensus 466 ~~~~l~~v 473 (826)
+...||.+
T Consensus 378 g~I~iW~~ 385 (388)
T d1erja_ 378 CKARIWKY 385 (388)
T ss_dssp SEEEEEEE
T ss_pred CEEEEEee
Confidence 77777765
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=1.8e-09 Score=111.98 Aligned_cols=59 Identities=19% Similarity=0.130 Sum_probs=39.5
Q ss_pred CCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec--CCCCCeeeEEEeecCCEEEEEE
Q 003363 448 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT--PAESNFSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 448 ~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt--~~~~~~~~~~~s~dg~~l~~~~ 506 (826)
...+++||+.+++.....+...+|.++..++..+... ..........|+|||+++++..
T Consensus 234 ~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~ 294 (333)
T d1ri6a_ 234 DIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAG 294 (333)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEEC
T ss_pred eEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEE
Confidence 3568999998877766667788888887665544332 2222233457999999876543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.07 E-value=1e-08 Score=107.31 Aligned_cols=271 Identities=11% Similarity=0.035 Sum_probs=143.4
Q ss_pred ecCCCCcceEEEEEeech-hhcccceeEEEEEEeecCCCCccc-eeecCCc--ceecccEEEEeCCCCCeEEEEecCCCC
Q 003363 102 NSGNGNGTQAMFSISQPN-LLANKRKKFMLSTVISKENENSVT-FQWAPFP--VEMTGASAVVPSPSGSKLLVVRNPENE 177 (826)
Q Consensus 102 ~~~s~dg~~v~~~~~~~~-~~~~~~~~~l~~~~i~~~~~~~~~-lt~~~~~--~~~~~~~~~~~SPdG~~la~~~~~~~~ 177 (826)
..+||||++|++...... .........++++++.+ ++.+. +...... .........+|||||+++++.....
T Consensus 52 ~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t--~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~-- 127 (355)
T d2bbkh_ 52 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT--LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP-- 127 (355)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT--CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS--
T ss_pred eEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC--CCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCC--
Confidence 356999999977644322 22233445677766532 22221 1111100 0011234578999999998765432
Q ss_pred CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCc
Q 003363 178 SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ 256 (826)
Q Consensus 178 ~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (826)
...+.... ..++..+.+...... .++.......+.+++||+.+++.....
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dg~~~~v~~~~~--------------------------- 178 (355)
T d2bbkh_ 128 APAVGVVDLEGKAFKRMLDVPDCY--HIFPTAPDTFFMHCRDGSLAKVAFGTE--------------------------- 178 (355)
T ss_dssp SCEEEEEETTTTEEEEEEECCSEE--EEEEEETTEEEEEETTSCEEEEECCSS---------------------------
T ss_pred CceeeeeecCCCcEeeEEecCCcc--eEeecCCcceEEEcCCCCEEEEEecCC---------------------------
Confidence 22233333 344444444432211 111122224678899998877653322
Q ss_pred ceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCc
Q 003363 257 GDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 336 (826)
Q Consensus 257 ~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~ 336 (826)
..+.+++..+.... .........+++++.. +++.+ ....
T Consensus 179 ----------------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~----~~~~~---------------~~~~ 217 (355)
T d2bbkh_ 179 ----------------GTPEITHTEVFHPE------DEFLINHPAYSQKAGR----LVWPT---------------YTGK 217 (355)
T ss_dssp ----------------SCCEEEECCCCSCT------TSCBCSCCEEETTTTE----EEEEB---------------TTSE
T ss_pred ----------------CeEEEEecccccce------ecceeeeccccCCCCe----EEEec---------------CCCe
Confidence 22334444333211 1122345678888887 87775 2235
Q ss_pred eEEEEcccccchhhhhhhhcCCCCCCcceecCC-------------CCccccCceecCCCCEEEEEeccCCCCCCCCccc
Q 003363 337 LYAVRVSLYKSEASELELKESSSEDLPVVNLTE-------------SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSAT 403 (826)
Q Consensus 337 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~-------------~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~ 403 (826)
+|.+++ .++....+.. .........++|||+.++.......... .....
T Consensus 218 ~~v~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~ 279 (355)
T d2bbkh_ 218 IHQIDL-----------------SSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR-HKTAS 279 (355)
T ss_dssp EEEEEC-----------------TTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC-TTSCE
T ss_pred EEEEec-----------------CCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCcee-ecCCC
Confidence 777776 3333222211 0122345789999999887766542211 11233
Q ss_pred ceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003363 404 DSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 483 (826)
Q Consensus 404 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~l 483 (826)
..|+++|..+++........ ..+..+.|+|||+.+++.+. .....|+.+|+.+|++.+-
T Consensus 280 ~~v~v~d~~t~~~~~~~~~~--------------------~~~~~~a~spDG~~~l~v~~-~~d~~i~v~D~~tg~~~~~ 338 (355)
T d2bbkh_ 280 RFVVVLDAKTGERLAKFEMG--------------------HEIDSINVSQDEKPLLYALS-TGDKTLYIHDAESGEELRS 338 (355)
T ss_dssp EEEEEEETTTCCEEEEEEEE--------------------EEECEEEECCSSSCEEEEEE-TTTTEEEEEETTTCCEEEE
T ss_pred CeEEEEeCCCCcEEEEecCC--------------------CCEEEEEEcCCCCeEEEEEE-CCCCEEEEEECCCCCEEEE
Confidence 57999998886542111000 01236789999997666543 4445788899999987654
Q ss_pred cC
Q 003363 484 TP 485 (826)
Q Consensus 484 t~ 485 (826)
..
T Consensus 339 i~ 340 (355)
T d2bbkh_ 339 VN 340 (355)
T ss_dssp EC
T ss_pred Ee
Confidence 43
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.06 E-value=5.9e-09 Score=107.89 Aligned_cols=269 Identities=11% Similarity=0.034 Sum_probs=141.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
..+...+|||||++||..+.++ .+.+|+ .++....+.. ..+.| ..++|+|||+.|+..+.+...
T Consensus 56 ~~I~~l~~s~~~~~l~sgs~Dg-----~v~iWd~~~~~~~~~~~~---~~~~v------~~v~~~~~~~~l~~~~~d~~i 121 (340)
T d1tbga_ 56 AKIYAMHWGTDSRLLVSASQDG-----KLIIWDSYTTNKVHAIPL---RSSWV------MTCAYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTT-----EEEEEETTTTEEEEEEEC---SCSCE------EEEEECTTSSEEEEEETTCCE
T ss_pred CCEEEEEECCCCCEEEEEECCC-----ceeeeecccceeEEEEec---ccccE------EeeEeeccceeeeeeccccee
Confidence 4588999999999999876543 577884 3433333332 11222 789999999999988776543
Q ss_pred CCCCccCCCCCCC--CCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCC
Q 003363 232 SKPTFSLGSTKGG--SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 309 (826)
Q Consensus 232 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~ 309 (826)
............. .....+...........+ ..............++.......... ......+....+.+++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 198 (340)
T d1tbga_ 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRL- 198 (340)
T ss_dssp EEEESSSSCSCCCEEEEECCCSSCEEEEEEEET-TEEEEEETTTEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSSE-
T ss_pred ecccccccccccccceecccccccccccccccc-cccccccccccccccccccccccccc-cccceeEeeeccccccce-
Confidence 2111110000000 000000000000000000 00001111222333333332222111 122223445566666664
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEE
Q 003363 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVF 388 (826)
Q Consensus 310 ~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f 388 (826)
++... .+..|..+|+ .+++ ...+..+...+...+|+|||+.|+.
T Consensus 199 ---~~~~~---------------~d~~v~i~d~-----------------~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s 243 (340)
T d1tbga_ 199 ---FVSGA---------------CDASAKLWDV-----------------REGMCRQTFTGHESDINAICFFPNGNAFAT 243 (340)
T ss_dssp ---EEEEE---------------TTTEEEEEET-----------------TTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ---eEEee---------------cCceEEEEEC-----------------CCCcEEEEEeCCCCCeEEEEECCCCCEEEE
Confidence 33322 3346888887 4443 4556666777888999999999887
Q ss_pred EeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeE
Q 003363 389 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 468 (826)
Q Consensus 389 ~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~ 468 (826)
.+.+ ..|.++|+......... .... ....+..+.|+|||+.|+. ...++.
T Consensus 244 ~s~d-----------~~i~~~~~~~~~~~~~~----------~~~~-------~~~~i~~~~~s~~~~~l~~-g~~dg~- 293 (340)
T d1tbga_ 244 GSDD-----------ATCRLFDLRADQELMTY----------SHDN-------IICGITSVSFSKSGRLLLA-GYDDFN- 293 (340)
T ss_dssp EETT-----------SCEEEEETTTTEEEEEE----------CCTT-------CCSCEEEEEECSSSCEEEE-EETTSC-
T ss_pred EeCC-----------CeEEEEeeccccccccc----------cccc-------ccCceEEEEECCCCCEEEE-EECCCE-
Confidence 6644 34888887764431100 0000 1113446789999986654 444444
Q ss_pred EEEEEECCCCcEEEecCC-CCCeeeEEEeecCCEEEEE
Q 003363 469 VIISVNVSSGELLRITPA-ESNFSWSLLTLDGDNIIAV 505 (826)
Q Consensus 469 ~l~~vdl~tg~~~~lt~~-~~~~~~~~~s~dg~~l~~~ 505 (826)
|..+|+.+++....... ...+....|++++..|+..
T Consensus 294 -i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~ 330 (340)
T d1tbga_ 294 -CNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330 (340)
T ss_dssp -EEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred -EEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence 56668888876655443 4456666788888866543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.04 E-value=7.3e-09 Score=107.56 Aligned_cols=304 Identities=8% Similarity=-0.014 Sum_probs=154.5
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCe
Q 003363 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 180 (826)
Q Consensus 102 ~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~-~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 180 (826)
|+.|++|++++... ....|.++++.+. +.. .++... .......+|||||++++.....+ ..
T Consensus 2 ~a~~~~~~~l~~~~---------~~~~v~v~D~~t~--~~~~t~~~~~----~~~p~~l~~spDG~~l~v~~~~~---~~ 63 (346)
T d1jmxb_ 2 PALKAGHEYMIVTN---------YPNNLHVVDVASD--TVYKSCVMPD----KFGPGTAMMAPDNRTAYVLNNHY---GD 63 (346)
T ss_dssp CCCCTTCEEEEEEE---------TTTEEEEEETTTT--EEEEEEECSS----CCSSCEEEECTTSSEEEEEETTT---TE
T ss_pred ccCCCCCcEEEEEc---------CCCEEEEEECCCC--CEEEEEEcCC----CCCcceEEECCCCCEEEEEECCC---Cc
Confidence 46789999886642 2236777776322 222 121111 02467899999999987654322 23
Q ss_pred EEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCccee
Q 003363 181 QFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (826)
Q Consensus 181 ~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (826)
+..++ ..++............+.. .....++|||||++++...........
T Consensus 64 v~~~d~~t~~~~~~~~~~~~~~~~~---~~~~~v~~s~DG~~l~v~~~~~~~~~~------------------------- 115 (346)
T d1jmxb_ 64 IYGIDLDTCKNTFHANLSSVPGEVG---RSMYSFAISPDGKEVYATVNPTQRLND------------------------- 115 (346)
T ss_dssp EEEEETTTTEEEEEEESCCSTTEEE---ECSSCEEECTTSSEEEEEEEEEEECSS-------------------------
T ss_pred EEEEeCccCeeeeeecccccccccC---CceEEEEEecCCCEEEEEecCCcceee-------------------------
Confidence 44444 4444444444322210000 011578999999998776543311100
Q ss_pred ecCCCccCCCccCceEEEEEccCCceEecc-CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceE
Q 003363 260 EEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (826)
Q Consensus 260 ~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~ 338 (826)
........+.++|..+++..... ..........+.+++|++ ++..+ ..+.
T Consensus 116 -------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----------------~~~~ 166 (346)
T d1jmxb_ 116 -------HYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-----LYVAG-----------------PDIY 166 (346)
T ss_dssp -------CEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-----EEEES-----------------SSEE
T ss_pred -------eeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE-----EEEeC-----------------Ccce
Confidence 00113467888898877644321 011112233456666665 33322 1466
Q ss_pred EEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCC---------------CCCCccc
Q 003363 339 AVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVD---------------SGAHSAT 403 (826)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~---------------~g~~~~~ 403 (826)
.+++ .+++...............++|+|+.++......... .-.....
T Consensus 167 ~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (346)
T d1jmxb_ 167 KMDV-----------------KTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL 229 (346)
T ss_dssp EECT-----------------TTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred EEEc-----------------cCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCC
Confidence 6776 4444333222233456677888887654332221000 0000111
Q ss_pred ceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003363 404 DSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 483 (826)
Q Consensus 404 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~l 483 (826)
..+..+|+.++...... ..+ .........+++++..+++... ..+..+|+.+++..+.
T Consensus 230 ~~~~~~~~~~~~~~~~~----------~~~--------~~~~~~~~~~~~~~~~~~~~~~----~~v~v~d~~~~~~~~~ 287 (346)
T d1jmxb_ 230 YGYLSVDLKTGKTHTQE----------FAD--------LTELYFTGLRSPKDPNQIYGVL----NRLAKYDLKQRKLIKA 287 (346)
T ss_dssp EEEEEEETTTCCEEEEE----------EEE--------CSSCEEEEEECSSCTTEEEEEE----SEEEEEETTTTEEEEE
T ss_pred ceEEEEECCCCceEEEE----------eec--------ccceeEEEEEeCCCCEEEEecC----CeEEEEECCCCcEEEE
Confidence 23444554443321100 000 0011224567788876665432 2578889999887665
Q ss_pred cCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 484 TPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 484 t~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
...........|++||+.++....+ ..|.+.|..+.
T Consensus 288 ~~~~~~~~~va~s~DG~~l~v~~~d----~~v~v~D~~t~ 323 (346)
T d1jmxb_ 288 ANLDHTYYCVAFDKKGDKLYLGGTF----NDLAVFNPDTL 323 (346)
T ss_dssp EECSSCCCEEEECSSSSCEEEESBS----SEEEEEETTTT
T ss_pred EcCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECccC
Confidence 4443345567899999988765432 35888886543
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.04 E-value=6.7e-09 Score=105.94 Aligned_cols=158 Identities=15% Similarity=0.133 Sum_probs=103.9
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
.+....+||||+.++..... ...+|+.++..+.. ..... ..++|+||++.|+....
T Consensus 101 ~~~~~~~s~~g~~~~~~~~~------~i~~~~~~~~~~~~-~~~~~----------~~~~~s~~~~~l~~g~~------- 156 (299)
T d1nr0a2 101 QPLGLAVSADGDIAVAACYK------HIAIYSHGKLTEVP-ISYNS----------SCVALSNDKQFVAVGGQ------- 156 (299)
T ss_dssp CEEEEEECTTSSCEEEEESS------EEEEEETTEEEEEE-CSSCE----------EEEEECTTSCEEEEEET-------
T ss_pred cccccccccccccccccccc------cccccccccccccc-ccccc----------ccccccccccccccccc-------
Confidence 46778999999988765443 35666544433332 12222 57899999998887543
Q ss_pred CccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003363 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (826)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lv 314 (826)
+..|.+||+.+++...+........+..++|+||++. |+
T Consensus 157 -------------------------------------dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----l~ 195 (299)
T d1nr0a2 157 -------------------------------------DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF----LV 195 (299)
T ss_dssp -------------------------------------TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE----EE
T ss_pred -------------------------------------ccccccccccccccccccccccccccccccccccccc----cc
Confidence 2578999999887665432333456778999999997 76
Q ss_pred EEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCC
Q 003363 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 394 (826)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~ 394 (826)
..+ .+..|+.+|+..+. .......+..+...+....|+|||++|+..+.+
T Consensus 196 ~~~---------------~d~~i~~~~~~~~~-------------~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~d-- 245 (299)
T d1nr0a2 196 ATD---------------QSRKVIPYSVANNF-------------ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD-- 245 (299)
T ss_dssp EEE---------------TTSCEEEEEGGGTT-------------EESCCCCCCCCSSCEEEEEECTTSSEEEEEETT--
T ss_pred ccc---------------cccccccccccccc-------------cccccccccccccccccccccccccceEEEcCC--
Confidence 655 23468888872100 011123344445567788999999998876654
Q ss_pred CCCCCCcccceEEEEeCCCCCC
Q 003363 395 VDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 395 ~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
..|++||+.++..
T Consensus 246 ---------g~i~iwd~~~~~~ 258 (299)
T d1nr0a2 246 ---------NSVIVWNMNKPSD 258 (299)
T ss_dssp ---------SCEEEEETTCTTS
T ss_pred ---------CEEEEEECCCCCc
Confidence 3588999887554
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.03 E-value=3.4e-08 Score=102.32 Aligned_cols=210 Identities=13% Similarity=0.062 Sum_probs=115.9
Q ss_pred ccEEEEeCC--CCCeEEEEecCCCCCCeEEEEecCCceeEEE-ec---CCCccccccCCCcccceeecCCCCeEEEEeec
Q 003363 155 GASAVVPSP--SGSKLLVVRNPENESPIQFELWSQSQLEKEF-HV---PQTVHGSVYADGWFEGISWNSDETLIAYVAEE 228 (826)
Q Consensus 155 ~~~~~~~SP--dG~~la~~~~~~~~~~~~~~i~~~~~~~~~~-~~---~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~ 228 (826)
.+...+||| ||++||..+.+ +.-.+|.+..+.....+. .. -....+.| ..+.|||||++|+..+..
T Consensus 65 ~v~~v~fsP~~~g~~lasgs~D--g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v------~~v~~s~~~~~l~~~~~~ 136 (325)
T d1pgua1 65 VVTTVKFSPIKGSQYLCSGDES--GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPI------SDISWDFEGRRLCVVGEG 136 (325)
T ss_dssp CEEEEEECSSTTCCEEEEEETT--SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCE------EEEEECTTSSEEEEEECC
T ss_pred CEEEEEEeeCCCCCEEEEEeCC--CCEEEeeecCCcceeeeecccccccccccCcE------EEEEECCCCCccceeecc
Confidence 488899998 56777665443 322333332222211111 10 01122233 789999999999887653
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCC
Q 003363 229 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308 (826)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~ 308 (826)
. ...+.+++.++++..... ......+..++|+|+++.
T Consensus 137 ~------------------------------------------~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~ 173 (325)
T d1pgua1 137 R------------------------------------------DNFGVFISWDSGNSLGEV-SGHSQRINACHLKQSRPM 173 (325)
T ss_dssp S------------------------------------------SCSEEEEETTTCCEEEEC-CSCSSCEEEEEECSSSSC
T ss_pred c------------------------------------------cceEEEEeecccccceee-eecccccccccccccccc
Confidence 2 234677777777644331 233456778999999998
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc-ee---cCCCCccccCceecCCCC
Q 003363 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VN---LTESISSAFFPRFSPDGK 384 (826)
Q Consensus 309 ~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~---Lt~~~~~~~~p~~SpDG~ 384 (826)
++.++. .+..+..+|. ...+. .. ...+...+....|+||+.
T Consensus 174 ----~~~~~~--------------~d~~v~~~d~-----------------~~~~~~~~~~~~~~~~~~v~~v~~~pd~~ 218 (325)
T d1pgua1 174 ----RSMTVG--------------DDGSVVFYQG-----------------PPFKFSASDRTHHKQGSFVRDVEFSPDSG 218 (325)
T ss_dssp ----EEEEEE--------------TTTEEEEEET-----------------TTBEEEEEECSSSCTTCCEEEEEECSTTC
T ss_pred ----eEEEee--------------cccccccccc-----------------cccccceecccccCCCCccEEeeeccccc
Confidence 776552 2235777776 22221 11 223344577889999865
Q ss_pred EEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccc---cCCCEEEEE
Q 003363 385 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL---SDGCTMLLS 461 (826)
Q Consensus 385 ~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws---~Dg~~l~~~ 461 (826)
.++.....+ ..|.+||..+++........ ...+....|+ +||++|+ +
T Consensus 219 ~~l~s~~~d----------~~i~iwd~~~~~~~~~l~~~-------------------~~~v~~~~~s~~~~dg~~l~-s 268 (325)
T d1pgua1 219 EFVITVGSD----------RKISCFDGKSGEFLKYIEDD-------------------QEPVQGGIFALSWLDSQKFA-T 268 (325)
T ss_dssp CEEEEEETT----------CCEEEEETTTCCEEEECCBT-------------------TBCCCSCEEEEEESSSSEEE-E
T ss_pred eeccccccc----------cceeeeeecccccccccccc-------------------ccccccceeeeeccCCCEEE-E
Confidence 444443332 45889998775532111100 0012233444 6888664 4
Q ss_pred EEeCCeEEEEEEECCCCcEEE
Q 003363 462 SIWGSSQVIISVNVSSGELLR 482 (826)
Q Consensus 462 ~~~~~~~~l~~vdl~tg~~~~ 482 (826)
...++. |..+|+.+++..+
T Consensus 269 ~s~D~~--i~iwd~~~~~~~~ 287 (325)
T d1pgua1 269 VGADAT--IRVWDVTTSKCVQ 287 (325)
T ss_dssp EETTSE--EEEEETTTTEEEE
T ss_pred EeCCCe--EEEEECCCCCEEE
Confidence 444444 5556888887654
|
| >d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG species: Acremonium chrysogenum [TaxId: 5044]
Probab=99.03 E-value=2.8e-10 Score=118.79 Aligned_cols=114 Identities=24% Similarity=0.286 Sum_probs=77.8
Q ss_pred CCCCcEEEEEcCCCCCCCCccchH----HHHHHHHCCcEEEEECCCCCCCCchhhhhcC-C---------CCCCcchHHH
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYSK----SLAFLSSVGYSLLIVNYRGSLGFGEEALQSL-P---------GKVGSQDVND 654 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~----~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~-~---------~~~~~~~~~D 654 (826)
..+.++||++|+-.++.....|-. .-..+--..|.||++|..|++ +|.+..... + .......+.|
T Consensus 41 ~~~~NaVlv~h~ltg~~~~~~WW~~liG~g~alDt~kyfVI~~n~lG~~-~gst~p~s~~p~~~~~~~yg~~FP~~ti~D 119 (376)
T d2vata1 41 VSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGSP-FGSAGPCSPDPDAEGQRPYGAKFPRTTIRD 119 (376)
T ss_dssp TTSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTCS-SSSSSTTSBCTTTC--CBCGGGCCCCCHHH
T ss_pred CCCCCEEEEcCCCcCCccccccHHHhCCCCCccCccceEEEEeccCCCC-cCCCCCCCCCcccccCCcccccCCcchhHH
Confidence 455789999999555443333311 112344466999999999864 333221111 1 1123456889
Q ss_pred HHHHHHHHHHcCCCCCCcE-EEEEecchHHHHHHHHHhCCCceeEEEecCCc
Q 003363 655 VLTAIDHVIDMGLANPSKV-TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (826)
Q Consensus 655 ~~~~i~~l~~~~~~d~~rv-~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~ 705 (826)
+..+-..|+++ +..+++ +|+|+||||+.|+..+..+|+++..+|.++..
T Consensus 120 ~v~aq~~ll~~--LGI~~l~aViG~SmGGmqal~wa~~~Pd~v~~li~Ia~~ 169 (376)
T d2vata1 120 DVRIHRQVLDR--LGVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATS 169 (376)
T ss_dssp HHHHHHHHHHH--HTCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCC
T ss_pred HHHHHHHHHHH--hCcceEEEeecccHHHHHHHHHHHhchHHHhhhcccccc
Confidence 99888877776 344676 68999999999999999999999998887764
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.03 E-value=2.3e-08 Score=105.37 Aligned_cols=169 Identities=15% Similarity=0.067 Sum_probs=102.7
Q ss_pred cEEEEeCCCCCeEEEEecCC-CCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPE-NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~-~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
....++||||+++++..... ....+++.++ ..++....+.... . ..+.|||||++|++.......
T Consensus 23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~-~----------~~~a~SpDG~~l~va~~~~~~-- 89 (373)
T d2madh_ 23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF-L----------PNPVAAHSGSEFALASTSFSR-- 89 (373)
T ss_pred ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC-C----------ccEEEcCCCCEEEEEeecCCc--
Confidence 56678999999997654322 2334677777 5555555443222 1 478999999999997654321
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCC------CccceEEEeeCCC
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS------LSVGQVVWAPLNE 307 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~------~~~~~~~wSPDg~ 307 (826)
.........|.+||..++++......+.. .....+.|+|||+
T Consensus 90 --------------------------------~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 137 (373)
T d2madh_ 90 --------------------------------IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA 137 (373)
T ss_pred --------------------------------ccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCC
Confidence 11122456799999999987654211111 1235679999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEE
Q 003363 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 387 (826)
Q Consensus 308 ~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~ 387 (826)
. +++..+... ..+..++. .+.+.... ........++|||+.++
T Consensus 138 ~----~~v~~~~~~-------------~~~~~~~~-----------------~~~~~~~~---~~~~~~~~~s~~g~~~~ 180 (373)
T d2madh_ 138 D----LLFFQFAAG-------------PAVGLVVQ-----------------GGSSDDQL---LSSPTCYHIHPGAPSTF 180 (373)
T ss_pred c----EEEEEEcCC-------------CceEEeec-----------------cCCeEEEE---eccceeEEEecCCCcEE
Confidence 8 877653222 24455554 33322211 12234678999999875
Q ss_pred EEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 388 f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
.....+ ..+.+++..++..
T Consensus 181 v~~~~d----------g~~~~~~~~~~~~ 199 (373)
T d2madh_ 181 YLLCAQ----------GGLAKTDHAGGAA 199 (373)
T ss_pred EEEcCC----------CeEEEEEcCCcee
Confidence 554432 4588888777554
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Probab=99.02 E-value=1.1e-09 Score=111.50 Aligned_cols=105 Identities=17% Similarity=0.185 Sum_probs=77.4
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCC
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (826)
....| ||++||.........|......|+++||.|+.+|++|.+ ... .....+++.++|+++.+..
T Consensus 29 ~~~~P-VvlvHG~~~~~~~~~~~~~~~~L~~~Gy~v~~~d~~g~g---~~d--------~~~sae~la~~i~~v~~~~-- 94 (317)
T d1tcaa_ 29 SVSKP-ILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWISPPPFM---LND--------TQVNTEYMVNAITALYAGS-- 94 (317)
T ss_dssp SCSSE-EEEECCTTCCHHHHHTTTHHHHHHTTTCEEEEECCTTTT---CSC--------HHHHHHHHHHHHHHHHHHT--
T ss_pred CCCCc-EEEECCCCCCCcchhHHHHHHHHHhCCCeEEEecCCCCC---CCc--------hHhHHHHHHHHHHHHHHhc--
Confidence 34455 678999654322223455788999999999999999832 211 1223678888999988873
Q ss_pred CCCcEEEEEecchHHHHHHHHHhCCC---ceeEEEecCCccc
Q 003363 669 NPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCN 707 (826)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~p~~~ 707 (826)
..++|.|+|||+||.++.+++.++|+ +++.+|.++|...
T Consensus 95 g~~kV~lVGhS~GG~~a~~~l~~~p~~~~~V~~~v~i~~~~~ 136 (317)
T d1tcaa_ 95 GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK 136 (317)
T ss_dssp TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTT
T ss_pred cCCceEEEEeCchHHHHHHHHHHCCCcchheeEEEEeCCCCC
Confidence 35789999999999999999998874 6888888887543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.96 E-value=5.4e-08 Score=105.17 Aligned_cols=162 Identities=10% Similarity=0.039 Sum_probs=98.4
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEE--ecCCCccccccCCCcccceeecCCCCeEEEEeecCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEF--HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~--~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~ 230 (826)
.+...+|||||++|+..+.. + ...+| ..++...+. .......+.+ ..+.|||||++|+..+..
T Consensus 63 ~~~~v~fSpDG~~l~~~s~d--g---~v~~~d~~t~~~~~~~~i~~~~~~~~~~------~s~~~SpDG~~l~vs~~~-- 129 (432)
T d1qksa2 63 AVHISRLSASGRYLFVIGRD--G---KVNMIDLWMKEPTTVAEIKIGSEARSIE------TSKMEGWEDKYAIAGAYW-- 129 (432)
T ss_dssp CEEEEEECTTSCEEEEEETT--S---EEEEEETTSSSCCEEEEEECCSEEEEEE------ECCSTTCTTTEEEEEEEE--
T ss_pred CeeEEEECCCCCEEEEEcCC--C---CEEEEEeeCCCceEEEEEecCCCCCCeE------EecccCCCCCEEEEEcCC--
Confidence 47788999999999776543 2 33444 234333332 3223333333 467899999998765443
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCC----------CCCccceE
Q 003363 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP----------KSLSVGQV 300 (826)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~----------~~~~~~~~ 300 (826)
...|.+||.+++++....... .......+
T Consensus 130 -----------------------------------------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (432)
T d1qksa2 130 -----------------------------------------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI 168 (432)
T ss_dssp -----------------------------------------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred -----------------------------------------CCeEEEEeCccccceeeeccCCccccceeccCCCceeEE
Confidence 267899999999876542000 01122246
Q ss_pred EEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecC--CCCccccCce
Q 003363 301 VWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT--ESISSAFFPR 378 (826)
Q Consensus 301 ~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt--~~~~~~~~p~ 378 (826)
.+||||+. +++... ....++.+|. .+.+...+. ..........
T Consensus 169 ~~s~dg~~----~~vs~~--------------~~~~i~~~d~-----------------~~~~~~~~~~i~~g~~~~~~~ 213 (432)
T d1qksa2 169 LASHYRPE----FIVNVK--------------ETGKILLVDY-----------------TDLNNLKTTEISAERFLHDGG 213 (432)
T ss_dssp EECSSSSE----EEEEET--------------TTTEEEEEET-----------------TCSSEEEEEEEECCSSEEEEE
T ss_pred EECCCCCE----EEEEEc--------------cCCeEEEEEc-----------------cCCCcceEEEEcccCccccce
Confidence 77888886 666542 2336888887 333322221 1223356789
Q ss_pred ecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 379 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 379 ~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
|||||++++..+... ..+.++|+.++.
T Consensus 214 ~spdg~~~~va~~~~----------~~v~v~d~~~~~ 240 (432)
T d1qksa2 214 LDGSHRYFITAANAR----------NKLVVIDTKEGK 240 (432)
T ss_dssp ECTTSCEEEEEEGGG----------TEEEEEETTTTE
T ss_pred ECCCCCEEEEecccc----------ceEEEeecccce
Confidence 999999988777543 568888877644
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.94 E-value=5.4e-09 Score=106.52 Aligned_cols=285 Identities=11% Similarity=0.030 Sum_probs=155.7
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003363 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (826)
Q Consensus 105 s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (826)
+|||+.++-. + .+..+.++++.+. .....+.... ..+....|+|+|..++...... ...+
T Consensus 26 sp~~~~l~s~-s--------~Dg~i~iWd~~~~-~~~~~~~~h~-----~~V~~~~~~~~~~~~~~~~~~~-----~~~~ 85 (317)
T d1vyhc1 26 HPVFSVMVSA-S--------EDATIKVWDYETG-DFERTLKGHT-----DSVQDISFDHSGKLLASCSADM-----TIKL 85 (317)
T ss_dssp CSSSSEEEEE-E--------SSSCEEEEETTTC-CCCEEECCCS-----SCEEEEEECTTSSEEEEEETTS-----CCCE
T ss_pred cCCCCEEEEE-e--------CCCeEEEEECCCC-CEEEEEeCCC-----CcEEEEeeeccccccccccccc-----cccc
Confidence 7888866432 1 2345667766332 2223333222 4588999999999998876543 1223
Q ss_pred ecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCC
Q 003363 185 WSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWG 264 (826)
Q Consensus 185 ~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g 264 (826)
+........... ....+ ......|+||++.|+..+.+.... .|+............+........|.++..
T Consensus 86 ~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (317)
T d1vyhc1 86 WDFQGFECIRTM-HGHDH------NVSSVSIMPNGDHIVSASRDKTIK--MWEVQTGYCVKTFTGHREWVRMVRPNQDGT 156 (317)
T ss_dssp EETTSSCEEECC-CCCSS------CEEEEEECSSSSEEEEEETTSEEE--EEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred cccccccccccc-ccccc------cceeeeccCCCceEEeeccCccee--EeecccceeeeEEccCCCcceeeecccCCC
Confidence 321111111111 11111 126788999999998877655332 222111111111222333344556677644
Q ss_pred ccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcce----e-eeeeeeccCCCceEE
Q 003363 265 ETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETR----K-LGIKYCYNRPCALYA 339 (826)
Q Consensus 265 ~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~----~-~g~~~~~~~~~~l~~ 339 (826)
..+++.....|.++++.+++..... ......+..+.|+|++.. +.......... . .........+..|+.
T Consensus 157 ~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 231 (317)
T d1vyhc1 157 LIASCSNDQTVRVWVVATKECKAEL-REHRHVVECISWAPESSY----SSISEATGSETKKSGKPGPFLLSGSRDKTIKM 231 (317)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECCSCGG----GGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred EEEEEeCCCeEEEEeeccceeeEEE-ecCCCCceEEEEeecccc----ceeeccccceeeeeccCCceeEeccCCCEEEE
Confidence 4444556788999999887755431 233345667788887764 22111100000 0 000111123456888
Q ss_pred EEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCC
Q 003363 340 VRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 418 (826)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 418 (826)
+|+ .++. ...+..+...+....|+|||++|+..+.+ ..|.+||+.+++...
T Consensus 232 ~~~-----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----------g~i~iwd~~~~~~~~ 283 (317)
T d1vyhc1 232 WDV-----------------STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD-----------KTLRVWDYKNKRCMK 283 (317)
T ss_dssp EET-----------------TTTEEEEEEECCSSCEEEEEECSSSSCEEEEETT-----------TEEEEECCTTSCCCE
T ss_pred EEC-----------------CCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECC-----------CeEEEEECCCCcEEE
Confidence 887 4443 45566666778889999999998866644 459999988765432
Q ss_pred cccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003363 419 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (826)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (826)
.... +...+..++|+|||+.|+ +...++...||
T Consensus 284 ~~~~-------------------h~~~V~~~~~s~~~~~l~-s~s~Dg~i~iW 316 (317)
T d1vyhc1 284 TLNA-------------------HEHFVTSLDFHKTAPYVV-TGSVDQTVKVW 316 (317)
T ss_dssp EEEC-------------------CSSCEEEEEECSSSSCEE-EEETTSEEEEE
T ss_pred EEcC-------------------CCCCEEEEEEcCCCCEEE-EEeCCCeEEEe
Confidence 1111 111344678999998654 55555555554
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.94 E-value=3.7e-09 Score=114.62 Aligned_cols=189 Identities=11% Similarity=-0.039 Sum_probs=115.5
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhh
Q 003363 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (826)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (826)
...|.+||.+++++... .+....+..++|||||++ |+..+ ++..+.++|+
T Consensus 41 ~g~v~v~D~~t~~v~~~--~~~g~~~~~v~fSpDG~~----l~~~s---------------~dg~v~~~d~--------- 90 (432)
T d1qksa2 41 AGQIALIDGSTYEIKTV--LDTGYAVHISRLSASGRY----LFVIG---------------RDGKVNMIDL--------- 90 (432)
T ss_dssp TTEEEEEETTTCCEEEE--EECSSCEEEEEECTTSCE----EEEEE---------------TTSEEEEEET---------
T ss_pred CCEEEEEECCCCcEEEE--EeCCCCeeEEEECCCCCE----EEEEc---------------CCCCEEEEEe---------
Confidence 36899999999987765 344446789999999997 76544 3347888997
Q ss_pred hhhhcCCCCCCcc---eec---CCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceee
Q 003363 352 LELKESSSEDLPV---VNL---TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 425 (826)
Q Consensus 352 ~~~~~~~~~~~~~---~~L---t~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 425 (826)
.+++. ..+ ..+.+...+|.|||||++|+.....+ ..+.+||..+++..........
T Consensus 91 --------~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~----------~~v~i~d~~t~~~~~~~~~~~~ 152 (432)
T d1qksa2 91 --------WMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP----------PQYVIMDGETLEPKKIQSTRGM 152 (432)
T ss_dssp --------TSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEET----------TEEEEEETTTCCEEEEEECCEE
T ss_pred --------eCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCC----------CeEEEEeCccccceeeeccCCc
Confidence 44432 122 23344578899999999986554432 5689999988765432221111
Q ss_pred eeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecC--CCCCeeeEEEeecCCEEE
Q 003363 426 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP--AESNFSWSLLTLDGDNII 503 (826)
Q Consensus 426 ~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~--~~~~~~~~~~s~dg~~l~ 503 (826)
.... ..+. .......+.+++||+.++++.. ....++.+|..+++..++.. .........+++||++++
T Consensus 153 ~~~~------~~~~--~~~~~~~v~~s~dg~~~~vs~~--~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~ 222 (432)
T d1qksa2 153 TYDE------QEYH--PEPRVAAILASHYRPEFIVNVK--ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFI 222 (432)
T ss_dssp CTTT------CCEE--SCCCEEEEEECSSSSEEEEEET--TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEE
T ss_pred cccc------eecc--CCCceeEEEECCCCCEEEEEEc--cCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEE
Confidence 0000 0000 0011123467899987776543 34567888887776544322 112344568999999887
Q ss_pred EEEeCCCCCCeEEEEeec
Q 003363 504 AVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 504 ~~~s~~~~p~~l~~~~~~ 521 (826)
+...... .+.+.+..
T Consensus 223 va~~~~~---~v~v~d~~ 237 (432)
T d1qksa2 223 TAANARN---KLVVIDTK 237 (432)
T ss_dssp EEEGGGT---EEEEEETT
T ss_pred Eeccccc---eEEEeecc
Confidence 7765433 36666654
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.91 E-value=1e-06 Score=94.66 Aligned_cols=282 Identities=11% Similarity=0.086 Sum_probs=157.6
Q ss_pred EEEeCCCCCeEEEEecCCC-CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 003363 158 AVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (826)
Q Consensus 158 ~~~~SPdG~~la~~~~~~~-~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~ 235 (826)
..++||||+++||.-+.++ +...+.+++ .+++..... +.... +..+.|++|++.|+|+..+.......
T Consensus 129 ~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~-i~~~~---------~~~~~W~~D~~~~~Y~~~~~~~~~~~ 198 (430)
T d1qfma1 129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LERVK---------FSCMAWTHDGKGMFYNAYPQQDGKSD 198 (430)
T ss_dssp EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEEEC---------SCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred ceEecCCCCEEEEEeccccCchheeEEeccCcceecccc-ccccc---------ccceEEcCCCCEEEEEEeccccCccc
Confidence 4578999999999876553 445565666 455443322 11111 15789999999999987654321100
Q ss_pred ccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceE--eccCC-CCCCccceEEEeeCCCCCccE
Q 003363 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ--AVKGI-PKSLSVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~--~l~~~-~~~~~~~~~~wSPDg~~~~~~ 312 (826)
+..-.......+++..+.++... .+-+. ........+..|+||+.
T Consensus 199 ----------------------------~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~---- 246 (430)
T d1qfma1 199 ----------------------------GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY---- 246 (430)
T ss_dssp ----------------------------SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE----
T ss_pred ----------------------------ccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcce----
Confidence 00000113357888888765432 22111 11223345667899997
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
++....... .....+|.+|+...... .........+.......... ...+|..+++.++.
T Consensus 247 l~i~~~~~~----------~~~~~~~~~d~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Tn~ 306 (430)
T d1qfma1 247 VLLSIREGC----------DPVNRLWYCDLQQESNG---------ITGILKWVKLIDNFEGEYDY-VTNEGTVFTFKTNR 306 (430)
T ss_dssp EEEEEECSS----------SSCCEEEEEEGGGSSSS---------SCSSCCCEEEECSSSSCEEE-EEEETTEEEEEECT
T ss_pred eeEEeeccC----------CccEEEEEeeCCCcccc---------cccccceeEeecccccceEE-EecCCceeecccCc
Confidence 766543221 13346888887321000 00001112232222111222 23466777777776
Q ss_pred CCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003363 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (826)
. .....|..+++....... ...+++ . .+.. +..-..+-.+..|++....++...|..
T Consensus 307 ~-------a~~~~L~~~~~~~~~~~~----w~~vi~---~-~~~~--------~~~~~~~~~~~~lvl~~~~~~~~~l~v 363 (430)
T d1qfma1 307 H-------SPNYRLINIDFTDPEESK----WKVLVP---E-HEKD--------VLEWVACVRSNFLVLCYLHDVKNTLQL 363 (430)
T ss_dssp T-------CTTCEEEEEETTBCCGGG----CEEEEC---C-CSSC--------EEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred c-------cccceeEEecCCCCcccc----ceEEec---c-cCcc--------eeeeEEEEECCEEEEEEEcCCEeEEEE
Confidence 5 234689999887543211 111221 1 1110 001112334457888877889999999
Q ss_pred EECCCCcEEEecCCCC-CeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 003363 473 VNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 524 (826)
Q Consensus 473 vdl~tg~~~~lt~~~~-~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~ 524 (826)
+++.+++...+..... .+.......+.+.+.+..+++.+|+.+|.+|+.+++
T Consensus 364 ~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~ 416 (430)
T d1qfma1 364 HDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (430)
T ss_dssp EETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence 9999999988865543 222223345677899999999999999999987665
|
| >d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Mammalian carboxylesterase (liver carboxylesterase I) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=5.1e-10 Score=125.20 Aligned_cols=128 Identities=23% Similarity=0.253 Sum_probs=92.2
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCC-CCCchhhhhcCCCCCCcchHHH
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS-LGFGEEALQSLPGKVGSQDVND 654 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~-~g~G~~~~~~~~~~~~~~~~~D 654 (826)
|...++.|++.....+.|++||+|||.+..+..........++.++.+||.+|||.. -||-....... .+...+.|
T Consensus 97 L~LnI~~P~~~~~~~~lPV~v~ihGG~~~~gs~~~~~~~~~~~~~~vIvVt~nYRLg~~GFl~~~~~~~---~gN~Gl~D 173 (532)
T d2h7ca1 97 LYLNIYTPADLTKKNRLPVMVWIHGGGLMVGAASTYDGLALAAHENVVVVTIQYRLGIWGFFSTGDEHS---RGNWGHLD 173 (532)
T ss_dssp CEEEEEECSCTTSCCCEEEEEEECCSTTTSCCSTTSCCHHHHHHHTCEEEEECCCCHHHHHCCCSSTTC---CCCHHHHH
T ss_pred CEEEEEECCCCCCCCCcEEEEEEeCCcccccccccCCchhhhhcCceEEEEEeeccCCCcccccccccc---ccccccHH
Confidence 555688897666677899999999988765443322223456788999999999963 12211111112 23445899
Q ss_pred HHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHh--CCCceeEEEecCCcc
Q 003363 655 VLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLC 706 (826)
Q Consensus 655 ~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~~ 706 (826)
++.|++|+.++ ..-|+++|.|+|+|.||..+..++.. ...+|+.+|+.++..
T Consensus 174 q~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG~~ 230 (532)
T d2h7ca1 174 QVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVA 230 (532)
T ss_dssp HHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCT
T ss_pred HHHHHHHHHHHHHHhcCCcceeeeeccccccchHHHHHhhhhccCcchhhhhhcccc
Confidence 99999999986 34799999999999999998877653 235899999999754
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.90 E-value=2e-08 Score=103.67 Aligned_cols=136 Identities=12% Similarity=0.088 Sum_probs=86.4
Q ss_pred CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccc
Q 003363 268 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (826)
Q Consensus 268 ~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (826)
++.....|.+||+.+++..... ......+..++|+|||+. |+..+ .+..|+.+|+
T Consensus 201 ~~~~d~~v~i~d~~~~~~~~~~-~~h~~~i~~v~~~p~~~~----l~s~s---------------~d~~i~~~~~----- 255 (340)
T d1tbga_ 201 SGACDASAKLWDVREGMCRQTF-TGHESDINAICFFPNGNA----FATGS---------------DDATCRLFDL----- 255 (340)
T ss_dssp EEETTTEEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTSCEEEEET-----
T ss_pred EeecCceEEEEECCCCcEEEEE-eCCCCCeEEEEECCCCCE----EEEEe---------------CCCeEEEEee-----
Confidence 3445678999999988765431 233446778999999997 76655 2346788887
Q ss_pred hhhhhhhhcCCCCCCcc-eec--CCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCccccee
Q 003363 348 EASELELKESSSEDLPV-VNL--TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 424 (826)
Q Consensus 348 ~~~~~~~~~~~~~~~~~-~~L--t~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 424 (826)
..... ..+ ......+....|+|||++|+..+.+ ..|++||+.+++......+
T Consensus 256 ------------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d-----------g~i~iwd~~~~~~~~~~~~-- 310 (340)
T d1tbga_ 256 ------------RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-----------FNCNVWDALKADRAGVLAG-- 310 (340)
T ss_dssp ------------TTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETT-----------SCEEEEETTTCCEEEEECC--
T ss_pred ------------cccccccccccccccCceEEEEECCCCCEEEEEECC-----------CEEEEEECCCCcEEEEEcC--
Confidence 33322 222 2233456788999999988765543 3589999887554211111
Q ss_pred eeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003363 425 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (826)
Q Consensus 425 ~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (826)
+...+..++|+|||+.| ++...++...||
T Consensus 311 -----------------H~~~V~~l~~s~d~~~l-~s~s~Dg~v~iW 339 (340)
T d1tbga_ 311 -----------------HDNRVSCLGVTDDGMAV-ATGSWDSFLKIW 339 (340)
T ss_dssp -----------------CSSCEEEEEECTTSSCE-EEEETTSCEEEE
T ss_pred -----------------CCCCEEEEEEeCCCCEE-EEEccCCEEEEe
Confidence 11234567899999865 455555655555
|
| >d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId: 42739]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Chromobacterium viscosum [TaxId: 42739]
Probab=98.86 E-value=2.7e-09 Score=110.28 Aligned_cols=104 Identities=17% Similarity=0.286 Sum_probs=77.6
Q ss_pred CCCCcEEEEEcCCCCCCC----CccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHH
Q 003363 589 CSCDPLIVVLHGGPHSVS----LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 664 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~----~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 664 (826)
..++| ||++||..+... ...|......|+++||.|+++|++|. |.+. ......+++.+.++.+++
T Consensus 6 ~~k~P-vvlvHG~~g~~~~~~~~~~~~~~~~~L~~~G~~V~~~~~~g~---g~s~-------~~~~~~~~l~~~i~~~~~ 74 (319)
T d1cvla_ 6 ATRYP-VILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSGF---QSDD-------GPNGRGEQLLAYVKQVLA 74 (319)
T ss_dssp CCSSC-EEEECCTTBSSEETTTEESSTTHHHHHHHTTCCEEECCCBCS---SCTT-------STTSHHHHHHHHHHHHHH
T ss_pred CCCCC-EEEECCCCCCcchhhhhhhHHHHHHHHHHCCCEEEEecCCCC---CCCC-------CCcccHHHHHHHHHHHHH
Confidence 34577 567899554321 11366788899999999999999984 3321 111235677777777766
Q ss_pred cCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCc
Q 003363 665 MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (826)
Q Consensus 665 ~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~ 705 (826)
. .+.++|.|+||||||.++..++.++|++++.+|.+++.
T Consensus 75 ~--~~~~~v~lvGhS~GG~~~~~~~~~~p~~v~~vv~i~~p 113 (319)
T d1cvla_ 75 A--TGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGTP 113 (319)
T ss_dssp H--HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred H--hCCCCEEEEeccccHHHHHHHHHHCccccceEEEECCC
Confidence 5 34689999999999999999999999999999988764
|
| >d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB esterase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Thermophilic para-nitrobenzyl esterase (PNB esterase) species: Bacillus subtilis [TaxId: 1423]
Probab=98.81 E-value=1.9e-09 Score=118.89 Aligned_cols=126 Identities=20% Similarity=0.221 Sum_probs=88.8
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccc-hH-HHHHHHHCCcEEEEECCCCCC-CCc--hhhhhcCCCCCCcc
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SK-SLAFLSSVGYSLLIVNYRGSL-GFG--EEALQSLPGKVGSQ 650 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~-~~-~~~~la~~G~~Vl~~d~rG~~-g~G--~~~~~~~~~~~~~~ 650 (826)
|...+|.|+. ..++.|||||||||.+..+.... .. ....+++.+++||.+|||... ||= .+.....+ +..
T Consensus 82 L~lni~~P~~--~~~~lPV~v~ihGG~~~~g~~~~~~~~~~~~~~~~~vVvV~~nYRlg~~GFl~~~~~~~~~~---gN~ 156 (483)
T d1qe3a_ 82 LYVNVFAPDT--PSQNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFGFLHLSSFDEAYS---DNL 156 (483)
T ss_dssp CEEEEEEECS--SCCSEEEEEEECCSTTTSCCTTSGGGCCHHHHHHHTCEEEEECCCCHHHHSCCCTTTCTTSC---SCH
T ss_pred CEEEEEECCC--CCCCCceEEEEeecccccCCccccccccccccccCceEEEeecccccchhhccccccccccc---ccc
Confidence 5557888974 56789999999998866544322 11 233445668999999999631 221 11111122 344
Q ss_pred hHHHHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHhC--CCceeEEEecCCcc
Q 003363 651 DVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 706 (826)
Q Consensus 651 ~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~~ 706 (826)
.+.|++.|++|+.++ ...|+++|.|+|+|.||..+..++... ..+|+.+|+.+|..
T Consensus 157 Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 217 (483)
T d1qe3a_ 157 GLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGAS 217 (483)
T ss_dssp HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCC
T ss_pred ccHHHHHHHHHHHHHHHHcCCCcccceeeccccccchhhhhhcccccCCcceeeccccCCc
Confidence 589999999999986 336999999999999999988776532 25899999999854
|
| >d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]
Probab=98.81 E-value=2.3e-09 Score=119.73 Aligned_cols=127 Identities=18% Similarity=0.182 Sum_probs=90.1
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccc---hHHH--HHHHHCCcEEEEECCCCCC-CCc--hhhhhcCCCCC
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY---SKSL--AFLSSVGYSLLIVNYRGSL-GFG--EEALQSLPGKV 647 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~---~~~~--~~la~~G~~Vl~~d~rG~~-g~G--~~~~~~~~~~~ 647 (826)
|...++.|++...+++.|+|||+|||.+..+.... .... ...+..+++||.+|||... ||- .+.....+++
T Consensus 106 L~LnI~~P~~~~~~~~lPV~V~ihGG~f~~G~~~~~~~~~~~~~~~~~~~~vIvVt~nYRlg~~Gfl~~~~~~~~~~gN- 184 (544)
T d1thga_ 106 LYLNVFRPAGTKPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFGFLGGDAITAEGNTN- 184 (544)
T ss_dssp CEEEEEEETTCCTTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHHHTCTT-
T ss_pred CEEEEEECCCCCCCCCCCEEEEeccCCCccCCCccCCcchhhhhhhhccCCeEEEecccccccccccCCchhhcccccc-
Confidence 55578889876667889999999999876544321 2222 2335788999999999521 121 1212223344
Q ss_pred CcchHHHHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHhC--------CCceeEEEecCCc
Q 003363 648 GSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPL 705 (826)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~~~p~ 705 (826)
..+.|++.|++|+.++ ..-|+++|.|+|+|.||..+..++... ..+|+.+|+.+|.
T Consensus 185 --~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~sp~~~~~~~s~gLF~raI~qSG~ 251 (544)
T d1thga_ 185 --AGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGG 251 (544)
T ss_dssp --HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCC
T ss_pred --HHHHHhhhhhhhhhhhhcccccCCCceEeeeeccchHHHHHHHhCcCCCcccchhhhhccccccccc
Confidence 3589999999999986 337999999999999999887776531 2489999999874
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.79 E-value=1.8e-07 Score=96.29 Aligned_cols=241 Identities=14% Similarity=0.177 Sum_probs=123.8
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCC-------
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN------- 176 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~------- 176 (826)
.||||+++..+ .. ....+.++++.+. .....+...............++||||++++.......
T Consensus 41 ~spDg~~l~v~-~~-------~~~~v~v~D~~t~-~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~ 111 (337)
T d1pbyb_ 41 VAPGGRIAYAT-VN-------KSESLVKIDLVTG-ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE 111 (337)
T ss_dssp ECTTSSEEEEE-ET-------TTTEEEEEETTTC-CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred ECCCCCEEEEE-EC-------CCCeEEEEECCCC-cEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecc
Confidence 48999987543 22 2235677765332 21222222221111123556899999999987754310
Q ss_pred CCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCC-----------CC
Q 003363 177 ESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST-----------KG 243 (826)
Q Consensus 177 ~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~-----------~~ 243 (826)
.......++ ..+...+.+...... .++.|||||++++....+.. .++.... ..
T Consensus 112 ~~~~~~~~~d~~~~~~~~~~~~~~~~----------~~~~~s~dg~~l~~~~~~~~----~~d~~~~~~~~~~~~~~~~~ 177 (337)
T d1pbyb_ 112 VQPTRVALYDAETLSRRKAFEAPRQI----------TMLAWARDGSKLYGLGRDLH----VMDPEAGTLVEDKPIQSWEA 177 (337)
T ss_dssp ECCCEEEEEETTTTEEEEEEECCSSC----------CCEEECTTSSCEEEESSSEE----EEETTTTEEEEEECSTTTTT
T ss_pred ccccceeeccccCCeEEEeccccCCc----------eEEEEcCCCCEEEEEcCCcc----eeeeecCcEEEEeecCCccc
Confidence 112233344 333444444433333 68899999999887543211 0110000 00
Q ss_pred C-CCCcc-CCCCC---Ccc-------eeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 244 G-SSDKD-CNSWK---GQG-------DWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 244 ~-~~~~~-~~~~~---~~~-------~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
. ....+ ...+. ... ....+............++++|..+++.......+.........++|+++.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 254 (337)
T d1pbyb_ 178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTR--- 254 (337)
T ss_dssp TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSE---
T ss_pred cceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceE---
Confidence 0 00000 00000 000 001111122223334568889988887665421233334556678888875
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEec
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~ 391 (826)
+ +... ..|.++|+ .+++...............|||||++|+..+
T Consensus 255 -~-~~~~----------------~~i~v~d~-----------------~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~- 298 (337)
T d1pbyb_ 255 -A-FGAY----------------NVLESFDL-----------------EKNASIKRVPLPHSYYSVNVSTDGSTVWLGG- 298 (337)
T ss_dssp -E-EEEE----------------SEEEEEET-----------------TTTEEEEEEECSSCCCEEEECTTSCEEEEES-
T ss_pred -E-EEcc----------------ccEEEEEC-----------------CCCcEEEEEcCCCCEEEEEECCCCCEEEEEe-
Confidence 4 3331 26888998 5555443333445567899999999886443
Q ss_pred cCCCCCCCCcccceEEEEeCCCCCC
Q 003363 392 KSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 392 ~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
. ..+|.+||..+.+.
T Consensus 299 ~----------~~~i~v~D~~t~~~ 313 (337)
T d1pbyb_ 299 A----------LGDLAAYDAETLEK 313 (337)
T ss_dssp B----------SSEEEEEETTTCCE
T ss_pred C----------CCcEEEEECCCCcE
Confidence 2 24699999988654
|
| >d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.79 E-value=9.5e-09 Score=103.81 Aligned_cols=101 Identities=18% Similarity=0.258 Sum_probs=75.7
Q ss_pred CCCCcEEEEEcCCCCCCC---CccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHc
Q 003363 589 CSCDPLIVVLHGGPHSVS---LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM 665 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~---~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 665 (826)
..++| ||++||...... ...|......|.++||.|+++|+++ +|... ...+++.+.|+.+.+.
T Consensus 5 ~~~~P-vvlvHG~~g~~~~~~~~yw~~i~~~L~~~G~~v~~~~~~~---~~~~~----------~~a~~l~~~i~~~~~~ 70 (285)
T d1ex9a_ 5 QTKYP-IVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQ---LDTSE----------VRGEQLLQQVEEIVAL 70 (285)
T ss_dssp CCSSC-EEEECCTTCCSEETTEESSTTHHHHHHHTTCCEEEECCCS---SSCHH----------HHHHHHHHHHHHHHHH
T ss_pred CCCCC-EEEECCCCCCccccchhhHHHHHHHHHhCCCEEEEeCCCC---CCCcH----------HHHHHHHHHHHHHHHH
Confidence 45678 788999543321 1236678889999999999999998 43322 1245566666666655
Q ss_pred CCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCc
Q 003363 666 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (826)
Q Consensus 666 ~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~ 705 (826)
...+++.|+||||||.++..++.++|++++.++.++..
T Consensus 71 --~g~~~v~ligHS~GG~~~r~~~~~~p~~v~~lv~i~tP 108 (285)
T d1ex9a_ 71 --SGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAP 108 (285)
T ss_dssp --HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred --cCCCeEEEEEECccHHHHHHHHHHCCccceeEEEECCC
Confidence 34578999999999999999999999999999987754
|
| >d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Fatty acid synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=5.1e-09 Score=105.36 Aligned_cols=94 Identities=15% Similarity=0.166 Sum_probs=60.2
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHH-HHHHHHHcCC
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT-AIDHVIDMGL 667 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~-~i~~l~~~~~ 667 (826)
+.+.| ||++||++++ ...|...+..| ++.|+++|++|.+.+ . .++++.+ .++.+.+.
T Consensus 23 ~~~~P-l~l~Hg~~gs--~~~~~~l~~~L---~~~v~~~d~~g~~~~----------~----~~~~~a~~~~~~~~~~-- 80 (286)
T d1xkta_ 23 SSERP-LFLVHPIEGS--TTVFHSLASRL---SIPTYGLQCTRAAPL----------D----SIHSLAAYYIDCIRQV-- 80 (286)
T ss_dssp CCSCC-EEEECCTTCC--CGGGHHHHHTC---SSCEEEECCCTTSCC----------S----CHHHHHHHHHHHHHHH--
T ss_pred CCCCe-EEEECCCCcc--HHHHHHHHHHc---CCeEEEEeCCCCCCC----------C----CHHHHHHHHHHHHHHh--
Confidence 44456 7799998876 45676666555 789999999984321 1 1233222 22333333
Q ss_pred CCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCC
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 704 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p 704 (826)
.+.+++.|+|||+||.+++.+|.++|+++..++....
T Consensus 81 ~~~~~~~lvGhS~Gg~vA~~~A~~~p~~~~~v~~l~~ 117 (286)
T d1xkta_ 81 QPEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNS 117 (286)
T ss_dssp CCSSCCEEEEETHHHHHHHHHHHHHHHC------CCE
T ss_pred cCCCceEEeecCCccHHHHHHHHHHHHcCCCceeEEE
Confidence 3457899999999999999999999998777665543
|
| >d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida cylindracea, cholesterol esterase [TaxId: 44322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Candida cylindracea, cholesterol esterase [TaxId: 44322]
Probab=98.78 E-value=6.7e-09 Score=115.73 Aligned_cols=127 Identities=20% Similarity=0.256 Sum_probs=88.6
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCcc-c--hHHH--HHHHHCCcEEEEECCCCCC-CCc--hhhhhcCCCCC
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-Y--SKSL--AFLSSVGYSLLIVNYRGSL-GFG--EEALQSLPGKV 647 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~-~--~~~~--~~la~~G~~Vl~~d~rG~~-g~G--~~~~~~~~~~~ 647 (826)
|...++.|+.....++.|||||||||.+...... + .... ..++.++++||.+|||... |+- .......++
T Consensus 98 L~LnI~~P~~~~~~~~~PVlv~ihGG~f~~g~~~~~~~~~~~~~~~~~~~~vIvVt~nYRLg~~GFl~~~~~~~~~~g-- 175 (534)
T d1llfa_ 98 LTINVVRPPGTKAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGDDIKAEGSG-- 175 (534)
T ss_dssp CEEEEEECTTCCTTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHHHTCT--
T ss_pred CEEEEEECCCCCCCCCCeEEEEECCCccccCCCCCCCchhccchhhhccCCeEEEEeecCCCcccccCCccccccccc--
Confidence 5567888976666789999999999887554332 2 1222 2456789999999999631 111 111112233
Q ss_pred CcchHHHHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHH-h----CC---CceeEEEecCCc
Q 003363 648 GSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIG-Q----AP---DKFVAAAARNPL 705 (826)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~-~----~p---~~~~a~v~~~p~ 705 (826)
...+.|++.|++|+.++ -..|+++|.|+|+|.||..+..++. . .| .+|+++|+.+|.
T Consensus 176 -N~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~~~~~~~sp~s~gLF~raI~qSGs 243 (534)
T d1llfa_ 176 -NAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp -THHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred -ccchhHHHHHHHHHHhhhhhhccCCcceeeeeecchHHHHHHHHhccccccccchhhhhhhhhhccCc
Confidence 34588999999999986 2379999999999999998865543 1 11 369999999873
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.77 E-value=1.8e-07 Score=96.63 Aligned_cols=100 Identities=8% Similarity=0.045 Sum_probs=65.0
Q ss_pred EEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCcc
Q 003363 159 VVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 237 (826)
Q Consensus 159 ~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~ 237 (826)
|++|++|++|++....+ ++.+++ ..++..+.+.++.+. . ..++.|||||++|+....
T Consensus 2 ~a~~~~~~~l~~~~~~~----~v~v~D~~t~~~~~t~~~~~~~--~------p~~l~~spDG~~l~v~~~---------- 59 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPN----NLHVVDVASDTVYKSCVMPDKF--G------PGTAMMAPDNRTAYVLNN---------- 59 (346)
T ss_dssp CCCCTTCEEEEEEETTT----EEEEEETTTTEEEEEEECSSCC--S------SCEEEECTTSSEEEEEET----------
T ss_pred ccCCCCCcEEEEEcCCC----EEEEEECCCCCEEEEEEcCCCC--C------cceEEECCCCCEEEEEEC----------
Confidence 58999999999876544 455444 455555555543221 1 158999999998865432
Q ss_pred CCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCC-----CccceEEEeeCCCCCccE
Q 003363 238 LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-----LSVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~-----~~~~~~~wSPDg~~~~~~ 312 (826)
....|++||+.++++......... ..+..++|||||+.
T Consensus 60 ---------------------------------~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~---- 102 (346)
T d1jmxb_ 60 ---------------------------------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKE---- 102 (346)
T ss_dssp ---------------------------------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSE----
T ss_pred ---------------------------------CCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCE----
Confidence 236799999999976543101111 13557899999997
Q ss_pred EEEEe
Q 003363 313 LVFVG 317 (826)
Q Consensus 313 lvf~~ 317 (826)
++...
T Consensus 103 l~v~~ 107 (346)
T d1jmxb_ 103 VYATV 107 (346)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 76654
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.74 E-value=1.9e-07 Score=96.38 Aligned_cols=164 Identities=12% Similarity=0.057 Sum_probs=101.8
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
..+....|||||++|+.+....+.. .....|+.++...... +..+.| ..+.|+|+++.++..+..
T Consensus 116 ~~v~~v~~s~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~---~h~~~v------~~~~~~~~~~~~~~~~~~----- 180 (325)
T d1pgua1 116 GPISDISWDFEGRRLCVVGEGRDNF-GVFISWDSGNSLGEVS---GHSQRI------NACHLKQSRPMRSMTVGD----- 180 (325)
T ss_dssp SCEEEEEECTTSSEEEEEECCSSCS-EEEEETTTCCEEEECC---SCSSCE------EEEEECSSSSCEEEEEET-----
T ss_pred CcEEEEEECCCCCccceeeccccce-EEEEeecccccceeee---eccccc------ccccccccccceEEEeec-----
Confidence 3478899999999999887643222 1222234443333221 222222 789999999887665432
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEec-cC-CCCCCccceEEEeeCCCCCcc
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KG-IPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l-~~-~~~~~~~~~~~wSPDg~~~~~ 311 (826)
+..+.+||...++...- .. ......+..++|+||+..
T Consensus 181 --------------------------------------d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~--- 219 (325)
T d1pgua1 181 --------------------------------------DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGE--- 219 (325)
T ss_dssp --------------------------------------TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCC---
T ss_pred --------------------------------------ccccccccccccccceecccccCCCCccEEeeeccccce---
Confidence 25678888876654332 11 122335678999999766
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceec---CCCCEEE
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFS---PDGKFLV 387 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~S---pDG~~l~ 387 (826)
++.++. .+..|.++|+ .+++ ...+..+........|+ |||++|+
T Consensus 220 -~l~s~~--------------~d~~i~iwd~-----------------~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~ 267 (325)
T d1pgua1 220 -FVITVG--------------SDRKISCFDG-----------------KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA 267 (325)
T ss_dssp -EEEEEE--------------TTCCEEEEET-----------------TTCCEEEECCBTTBCCCSCEEEEEESSSSEEE
T ss_pred -eccccc--------------cccceeeeee-----------------ccccccccccccccccccceeeeeccCCCEEE
Confidence 655542 2336888887 4444 34555555556666776 8999988
Q ss_pred EEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 388 f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
..+.+ ..|.+||+.+++.
T Consensus 268 s~s~D-----------~~i~iwd~~~~~~ 285 (325)
T d1pgua1 268 TVGAD-----------ATIRVWDVTTSKC 285 (325)
T ss_dssp EEETT-----------SEEEEEETTTTEE
T ss_pred EEeCC-----------CeEEEEECCCCCE
Confidence 76644 3588999887553
|
| >d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Esterase EstA species: Aspergillus niger [TaxId: 5061]
Probab=98.71 E-value=7.2e-09 Score=114.96 Aligned_cols=130 Identities=17% Similarity=0.160 Sum_probs=87.8
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cchHHHHHH-HHCCcEEEEECCCCCC-CCchhhhhcCCCCCCcchH
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFL-SSVGYSLLIVNYRGSL-GFGEEALQSLPGKVGSQDV 652 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~~~~~~~l-a~~G~~Vl~~d~rG~~-g~G~~~~~~~~~~~~~~~~ 652 (826)
|...++.|+.....++.||+||+|||.+..+.. .+......+ ...+.+|+.+|||... ||=........+ .+...+
T Consensus 81 L~LnI~~P~~~~~~~~~PV~v~ihGG~~~~G~~~~~~~~~~~~~~~~~vVvVt~nYRlg~~GFl~~~~~~~~~-~~N~Gl 159 (517)
T d1ukca_ 81 LFINVFKPSTATSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQNG-DLNAGL 159 (517)
T ss_dssp CEEEEEEETTCCTTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCCCHHHHHSS-CTTHHH
T ss_pred CEEEEEeCCCCCCCCCceEEEEEcCCccccCCCccccchhhhhhhccccceEEEEecccceeecCcccccccc-ccchhH
Confidence 555688888655567889999999988765433 233222223 3567899999999621 111100001111 123458
Q ss_pred HHHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHh----CCCceeEEEecCCcc
Q 003363 653 NDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ----APDKFVAAAARNPLC 706 (826)
Q Consensus 653 ~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~----~p~~~~a~v~~~p~~ 706 (826)
.|+..|++|+.++ ...|+++|.|+|+|.||..+..++.. ...+|+.+|+.+|..
T Consensus 160 ~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~s~~~~~~gLF~raI~qSg~~ 220 (517)
T d1ukca_ 160 LDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFW 220 (517)
T ss_dssp HHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCC
T ss_pred HHHHHHHHHHHHHHHhhcCCcccccccccccchhhHHHHHhccccccccccceeeeccccc
Confidence 9999999999986 33799999999999999988765542 224899999999854
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=98.70 E-value=1.9e-05 Score=71.27 Aligned_cols=294 Identities=12% Similarity=0.150 Sum_probs=170.4
Q ss_pred HHHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEE
Q 003363 79 YASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASA 158 (826)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~ 158 (826)
|.+.++.++++.++|-..-.-.. .+.+.+.+..++. .-+++.+ .+++.+.||-.|. ...
T Consensus 1 yseivk~lE~lv~ip~Y~v~Gkl----~~d~ll~~~~seG-------~vni~~l----~g~~~vkLtkePI------~~~ 59 (313)
T d2hu7a1 1 FSRIVRDVERLIAVEKYSLQGVV----DGDKLLVVGFSEG-------SVNAYLY----DGGETVKLNREPI------NSV 59 (313)
T ss_dssp CHHHHHHHHHHHHSCEEEEEEEE----TTTEEEEEEEETT-------EEEEEEE----SSSSCEECCSSCC------SEE
T ss_pred ChhHHHHHHHHhcccceeEEEEe----cCCcEEEEEeccc-------eEEEEEE----eCCEEEEEecccc------cCc
Confidence 35678889999888765422222 2223333333332 2344443 3557788887773 233
Q ss_pred EEeCCCCCeEEEEecCCCCCCe--EEEEecC--CceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 159 VVPSPSGSKLLVVRNPENESPI--QFELWSQ--SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 159 ~~~SPdG~~la~~~~~~~~~~~--~~~i~~~--~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
+..-+.=.++.|+++..++..+ ++..... |+..++ ..+..+ .-.+-.-|++.|+|+....
T Consensus 60 ~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i-~spk~v----------RI~S~~yddk~vvF~Gase----- 123 (313)
T d2hu7a1 60 LDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRL-EAVKPM----------RILSGVDTGEAVVFTGATE----- 123 (313)
T ss_dssp CEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEEC-TTSCSB----------EEEEEEECSSCEEEEEECS-----
T ss_pred CCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEe-cCCceE----------EEEEeeecCceEEEecccC-----
Confidence 3444455689999988765544 4444422 443332 222223 4556677999999985533
Q ss_pred CccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003363 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (826)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lv 314 (826)
....||+++ +|+.+.|...| ..++.=.=.|+. |+
T Consensus 124 ------------------------------------d~~~LYvie--gGklrkL~~vP----pFsFVtDI~~d~----I~ 157 (313)
T d2hu7a1 124 ------------------------------------DRVALYALD--GGGLRELARLP----GFGFVSDIRGDL----IA 157 (313)
T ss_dssp ------------------------------------SCEEEEEEE--TTEEEEEEEES----SCEEEEEEETTE----EE
T ss_pred ------------------------------------CceEEEEEe--CCceeeeccCC----CcceEEeccCCe----EE
Confidence 225677665 88888883222 222322334554 55
Q ss_pred EEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCC
Q 003363 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 394 (826)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~ 394 (826)
=.+--. .++..+|..|+ .+|..+.+|...++...+..+|+.|-..=..+.
T Consensus 158 G~g~~~-----------g~~~sfF~adl-----------------~SG~lri~tpkeGS~~~ay~~~gnKV~sdyEt~-- 207 (313)
T d2hu7a1 158 GLGFFG-----------GGRVSLFTSNL-----------------SSGGLRVFDSGEGSFSSASISPGMKVTAGLETA-- 207 (313)
T ss_dssp EEEEEE-----------TTEEEEEEEET-----------------TTEEEEEECCSSEEEEEEEECTTSCEEEEEEES--
T ss_pred EEeeec-----------CCcceEEEEec-----------------ccCCEEEecCCCCcccceeEccCceeeeccCCC--
Confidence 444211 23336999998 889999999999999999999988752211111
Q ss_pred CCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcc--cccCCCCCCc---cccCCCEEEEEEEeCCeEE
Q 003363 395 VDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG--LYSSSILSNP---WLSDGCTMLLSSIWGSSQV 469 (826)
Q Consensus 395 ~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g--~~~~~~~~~~---ws~Dg~~l~~~~~~~~~~~ 469 (826)
+...+..+|+..+...++. ||+ +|........ ..||++ |++.+..+|+..
T Consensus 208 -------gEsywit~D~~s~~yerve-----------------~P~kd~~sy~p~~I~~~~Y~Pdd~-L~iiakrdG~s~ 262 (313)
T d2hu7a1 208 -------REARLVTVDPRDGSVEDLE-----------------LPSKDFSSYRPTAITWLGYLPDGR-LAVVARREGRSA 262 (313)
T ss_dssp -------SCEEEEEECTTTCCEEECC-----------------CSSCHHHHHCCSEEEEEEECTTSC-EEEEEEETTEEE
T ss_pred -------CceEEEEEecccCceeeee-----------------cCcccceeecceEEEeeeeCCCCc-EEEEEecCCchh
Confidence 1233345677765432221 121 1111222233 579998 545567788999
Q ss_pred EEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEE
Q 003363 470 IISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYG 518 (826)
Q Consensus 470 l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~ 518 (826)
||. .|+ ++....+.+ .....=++++++..++..+|++|...
T Consensus 263 lF~----nGk--~in~p~G~~--~gat~i~~~iyfshsSL~tP~kI~~~ 303 (313)
T d2hu7a1 263 VFI----DGE--RVEAPQGNH--GRVVLWRGKLVTSHTSLSTPPRIVSL 303 (313)
T ss_dssp EEE----TTE--EECCCSSEE--EEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred eee----cce--EecCCCCcc--cceEEECCEEEEeecccCCCceeEEc
Confidence 885 344 344444433 33445578999999999999988653
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.70 E-value=6.6e-07 Score=91.41 Aligned_cols=291 Identities=9% Similarity=-0.051 Sum_probs=133.3
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe---cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEE-eecC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV-AEEP 229 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~-~~~~ 229 (826)
..+...+|||||++||..+.++ .+.+| .......+... .+..+.| ..++|+|++..++++ +.+.
T Consensus 12 d~I~~l~fsp~~~~L~s~s~Dg-----~v~iwd~~~~~~~~~~~~~-~~h~~~V------~~v~f~~~~~~~l~sg~~d~ 79 (342)
T d1yfqa_ 12 DYISDIKIIPSKSLLLITSWDG-----SLTVYKFDIQAKNVDLLQS-LRYKHPL------LCCNFIDNTDLQIYVGTVQG 79 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTS-----EEEEEEEETTTTEEEEEEE-EECSSCE------EEEEEEESSSEEEEEEETTS
T ss_pred CCEEEEEEeCCCCEEEEEECCC-----eEEEEEccCCCcceEEEEe-cCCCCCE------EEEEEeCCCCCEEEEccccc
Confidence 3589999999999999876543 45555 23333232221 1222233 789999987655444 4444
Q ss_pred CCCCCCccCCCCCCCCCCc-cCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEe-----ccCCCCCCccceEEEe
Q 003363 230 SPSKPTFSLGSTKGGSSDK-DCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA-----VKGIPKSLSVGQVVWA 303 (826)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~-----l~~~~~~~~~~~~~wS 303 (826)
... .|............ ..........+..+-...+.......+.+||+.++.... ..............+.
T Consensus 80 ~v~--~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (342)
T d1yfqa_ 80 EIL--KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD 157 (342)
T ss_dssp CEE--EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred cee--eeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeee
Confidence 322 22211111100000 001111111122222233333456778888875433211 1111122234456788
Q ss_pred eCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCcee-cCC
Q 003363 304 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRF-SPD 382 (826)
Q Consensus 304 PDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~-SpD 382 (826)
+++.. ++..+ ....|..+|+.... ...................+ +.+
T Consensus 158 ~~~~~----~~~~~---------------~d~~i~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~ 205 (342)
T d1yfqa_ 158 TNSSR----LIVGM---------------NNSQVQWFRLPLCE-------------DDNGTIEESGLKYQIRDVALLPKE 205 (342)
T ss_dssp ECSSE----EEEEE---------------STTEEEEEESSCCT-------------TCCCEEEECSCSSCEEEEEECSGG
T ss_pred ccCCc----eeeec---------------CCCcEEEEecccCc-------------ccceeeeecccccceeeeEeecCC
Confidence 88886 66655 22367777762110 00011111112222222333 445
Q ss_pred CCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEE
Q 003363 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 462 (826)
Q Consensus 383 G~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~ 462 (826)
+..++..+.+ ..+.++++.............. ....... .... .....+..++|+|+++.| ++.
T Consensus 206 ~~~~~~~s~d-----------g~~~v~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~-~~~~~v~~l~~sp~~~~l-asg 269 (342)
T d1yfqa_ 206 QEGYACSSID-----------GRVAVEFFDDQGDDYNSSKRFA-FRCHRLN--LKDT-NLAYPVNSIEFSPRHKFL-YTA 269 (342)
T ss_dssp GCEEEEEETT-----------SEEEEEECCTTCCSTTCTTCEE-EECCCCC--TTCC-SSCCCEEEEEECTTTCCE-EEE
T ss_pred CCEEEeecCC-----------CeEEEEEecCCcceeeccccce-eeeeeec--cCCC-cccccceeEEecCCccEE-EEE
Confidence 5555544433 2355555544332211111110 0000000 0000 011123457899999855 454
Q ss_pred EeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeC
Q 003363 463 IWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 508 (826)
Q Consensus 463 ~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~ 508 (826)
..++ .|..+|+.+++...-...........++++++.+++..++
T Consensus 270 ~~Dg--~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sd 313 (342)
T d1yfqa_ 270 GSDG--IISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSD 313 (342)
T ss_dssp ETTS--CEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEEC
T ss_pred CCCC--EEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcC
Confidence 4444 4555688887755433333334556889999876665543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.67 E-value=4.8e-06 Score=87.09 Aligned_cols=58 Identities=10% Similarity=-0.007 Sum_probs=35.7
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEec--CCCccccccCCCcccceeecCCCCeEEEEe
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV--PQTVHGSVYADGWFEGISWNSDETLIAYVA 226 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~ 226 (826)
.+..++||||+.|+.+.. +.-..|.++..+....+... .... ..+.++|||+.++...
T Consensus 42 ~s~la~s~d~~~ly~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~p----------~~v~~~~~~~~~~v~~ 101 (365)
T d1jofa_ 42 ISWMTFDHERKNIYGAAM---KKWSSFAVKSPTEIVHEASHPIGGHP----------RANDADTNTRAIFLLA 101 (365)
T ss_dssp CSEEEECTTSSEEEEEEB---TEEEEEEEEETTEEEEEEEEECCSSG----------GGGCTTSCCEEEEEEE
T ss_pred CCEEEEcCCCCEEEEEeC---CcEEEEEEeCCCCeEEEeeecCCCCc----------EEEEECCCCCEEEEEE
Confidence 467889999998866533 33445666644444333322 2222 5788999999776544
|
| >d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.64 E-value=1.4e-08 Score=113.46 Aligned_cols=129 Identities=21% Similarity=0.159 Sum_probs=87.5
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCcc--chHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHH
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS--YSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~--~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~ 653 (826)
|...++.|.. ...++.||+||+|||.+..+... ........+..+.+|+.+|||... +|--.........+...+.
T Consensus 97 L~LnI~~P~~-~~~~~lPV~v~ihGG~~~~gs~~~~~~~~~~~~~~~~vvvVt~nYRlg~-~Gfl~~~~~~~~~gN~Gl~ 174 (542)
T d2ha2a1 97 LYLNVWTPYP-RPASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGT-FGFLALPGSREAPGNVGLL 174 (542)
T ss_dssp CEEEEEEESS-CCSSCEEEEEEECCSTTTCCCTTSGGGCTHHHHHHHCCEEEEECCCCHH-HHHCCCTTCSSCCSCHHHH
T ss_pred CEEEEEecCC-CCCCCCcEEEEEEECccccccCcccccCchhhhhhccceeEeeeeeccc-eeeecccccccCCCcCCcc
Confidence 4556778864 34578899999999876543221 111122335679999999999521 1111101111223444689
Q ss_pred HHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHhC--CCceeEEEecCCcc
Q 003363 654 DVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 706 (826)
Q Consensus 654 D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~~ 706 (826)
|++.|++|+.++ ..-|+++|.|+|+|.||..+..++... ..+|..+|+.++..
T Consensus 175 Dq~~AL~WV~~nI~~FGGDP~~VTi~G~SAGa~sv~~ll~sp~~~~LF~~aI~~SG~~ 232 (542)
T d2ha2a1 175 DQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (542)
T ss_dssp HHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred cHHHHHHHHHHHHHHhhcCccccccccccccccchhhhhhhhhhhHHhhhheeecccc
Confidence 999999999986 347999999999999999998776632 25899999988743
|
| >d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray (Torpedo californica) [TaxId: 7787]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Pacific electric ray (Torpedo californica) [TaxId: 7787]
Probab=98.64 E-value=1.3e-08 Score=113.50 Aligned_cols=128 Identities=22% Similarity=0.161 Sum_probs=87.5
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccc--hHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHH
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY--SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~--~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~ 653 (826)
|...++.|.. ..++.|++||||||.+..+.... ......+++.+.+||.+|||... +|--.........+...+.
T Consensus 92 L~LnI~~P~~--~~~~lPV~v~ihGG~~~~g~~~~~~~~~~~~~~~~~vvvVt~nYRlg~-~GFl~~~~~~~~~gN~Gl~ 168 (532)
T d1ea5a_ 92 LYLNIWVPSP--RPKSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGA-FGFLALHGSQEAPGNVGLL 168 (532)
T ss_dssp CEEEEEECSS--CCSSEEEEEEECCSTTTCCCTTCGGGCTHHHHHHHTCEEEECCCCCHH-HHHCCCTTCSSSCSCHHHH
T ss_pred CEEEEEeCCC--CCCCCcEEEEEEcCCcccccCCccccCcchhhcccCccEEEEeecccc-ccccccccccCCCCcccch
Confidence 4456788874 45689999999998765433221 11233456789999999999621 1111001011123344689
Q ss_pred HHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHhC--CCceeEEEecCCcc
Q 003363 654 DVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 706 (826)
Q Consensus 654 D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~~ 706 (826)
|+..|++|+.++ ..-|+++|.|+|+|.||..+..++... ..+|..+|+.++..
T Consensus 169 Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lF~~aI~~Sg~~ 226 (532)
T d1ea5a_ 169 DQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSP 226 (532)
T ss_dssp HHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCT
T ss_pred hHHHHHHHHHHHHHhhcCCccceEeeeecccccchhhhccCccchhhhhhheeecccc
Confidence 999999999986 337999999999999999988776631 25899999888654
|
| >d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol esterase) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Bile-salt activated lipase (cholesterol esterase) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.62 E-value=9.1e-09 Score=115.83 Aligned_cols=128 Identities=20% Similarity=0.193 Sum_probs=85.4
Q ss_pred EEEEEEecCCC-CCCCCCcEEEEEcCCCCCCCCcc-------chHHHHHHH-HCCcEEEEECCCCC-CCCchhhhhcCCC
Q 003363 576 FEAIFVSSSHK-KDCSCDPLIVVLHGGPHSVSLSS-------YSKSLAFLS-SVGYSLLIVNYRGS-LGFGEEALQSLPG 645 (826)
Q Consensus 576 l~~~~~~P~~~-~~~~~~P~vv~~HGg~~~~~~~~-------~~~~~~~la-~~G~~Vl~~d~rG~-~g~G~~~~~~~~~ 645 (826)
|...+|.|... +..++.|||||||||.+..+... +......|+ ..+.+||.+|||.. -||-.......+
T Consensus 81 L~LNI~~P~~~~~~~~~lPV~V~iHGG~f~~Gs~~~~~~~~~~~~dg~~la~~~~vIvVt~nYRlg~~GFl~~~~~~~~- 159 (579)
T d2bcea_ 81 LYLNIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLGFLSTGDSNLP- 159 (579)
T ss_dssp CEEEEEEEECSSSCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHHHHHCCCSSTTCC-
T ss_pred CEEEEEECCCCCCCCCCCcEEEEECCCcccCCCCCCcccCCccccchhhhhccCCEEEEeecccccccccccccccCCC-
Confidence 55567888643 23567999999999875432211 111123444 45699999999952 112111111223
Q ss_pred CCCcchHHHHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHh--CCCceeEEEecCCcc
Q 003363 646 KVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLC 706 (826)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~~ 706 (826)
+...+.|++.|++|+.++ ..-|+++|.|+|+|.||..+..++.. ...+|+.+|+.++..
T Consensus 160 --gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 223 (579)
T d2bcea_ 160 --GNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGVG 223 (579)
T ss_dssp --CCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCCT
T ss_pred --ccchhhHHHHHHHHHhhhhhhhccCcCceEeeecccccchhhhhhhhhcccCccccceeccCCc
Confidence 344589999999999986 33799999999999999998876653 246899999998743
|
| >d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.62 E-value=1.7e-08 Score=113.34 Aligned_cols=119 Identities=16% Similarity=0.108 Sum_probs=80.3
Q ss_pred CCCCCcEEEEEcCCCCCCCCcc-chHHHHHHH-HCCcEEEEECCCCCCCCchhh------hhcCCCCCCcchHHHHHHHH
Q 003363 588 DCSCDPLIVVLHGGPHSVSLSS-YSKSLAFLS-SVGYSLLIVNYRGSLGFGEEA------LQSLPGKVGSQDVNDVLTAI 659 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~-~~~~~~~la-~~G~~Vl~~d~rG~~g~G~~~------~~~~~~~~~~~~~~D~~~~i 659 (826)
..++.|||||||||.+..+... .......|+ ....+||.+|||... +|--. ........+...+.|++.|+
T Consensus 135 ~~~~lPV~V~ihGG~f~~Gs~~~~~~~~~~l~~~~~vVvVtinYRlg~-fGFl~~~~~~~~~~~~~~~gN~Gl~Dq~~AL 213 (571)
T d1dx4a_ 135 TTNGLPILIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYRVGA-FGFLHLAPEMPSEFAEEAPGNVGLWDQALAI 213 (571)
T ss_dssp CCSSEEEEEEECCSTTTCCCTTCGGGCCHHHHHHHTCEEEEECCCCTH-HHHCCCGGGSCGGGTTSSCSCHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCccCCCCcccccchhhhhhcCCeeEEeecceecc-ccccccccccccccccCCCCcccchHHHHHH
Confidence 4578899999999886543321 111223444 446999999999631 22100 00011122344589999999
Q ss_pred HHHHHc---CCCCCCcEEEEEecchHHHHHHHHHhC--CCceeEEEecCCccc
Q 003363 660 DHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCN 707 (826)
Q Consensus 660 ~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~~~ 707 (826)
+|+.++ ..-|+++|.|+|+|.||..+..++... ..+|+.+|+.++...
T Consensus 214 ~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~ll~sp~~~~lf~~aI~~Sg~~~ 266 (571)
T d1dx4a_ 214 RWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTMN 266 (571)
T ss_dssp HHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCTT
T ss_pred HHHHHhhhhhccCCCceEeccccCccceeeeeeccccccccccccceeccccc
Confidence 999996 236999999999999999998776532 258999998887543
|
| >d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Butyryl cholinesterase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=2.8e-08 Score=110.52 Aligned_cols=128 Identities=19% Similarity=0.128 Sum_probs=86.6
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCcc-chH-HHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHH
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YSK-SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~-~~~-~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~ 653 (826)
|...+|.|.. ..++.|+|||+|||.+..+... ... .....++.+.+|+.+|||... +|--.........+...+.
T Consensus 90 L~lnI~~P~~--~~~~~PV~v~ihGG~~~~gs~~~~~~~~~~~~~~~~vVvVt~nYRlg~-~Gfl~~~~~~~~~gN~Gl~ 166 (526)
T d1p0ia_ 90 LYLNVWIPAP--KPKNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGA-LGFLALPGNPEAPGNMGLF 166 (526)
T ss_dssp CEEEEEEESS--CCSSEEEEEEECCSTTTSCCTTCGGGCTHHHHHHHCCEEEEECCCCHH-HHHCCCTTCTTSCSCHHHH
T ss_pred CEEEEEeCCC--CCCCCceEEEEECCCcccccCcccccCccccccccceeEEeccccccc-ccccCCCCccccccccccc
Confidence 4556788874 4567899999999887654332 111 222335679999999999521 1110000111223444689
Q ss_pred HHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHh--CCCceeEEEecCCcc
Q 003363 654 DVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLC 706 (826)
Q Consensus 654 D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~~ 706 (826)
|++.|++|+.++ ..-|+++|.|+|+|.||..+..++.. ...+|+.+|+.++..
T Consensus 167 Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lf~~aI~~Sg~~ 224 (526)
T d1p0ia_ 167 DQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSF 224 (526)
T ss_dssp HHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCT
T ss_pred chhhhhhhHHHHHHHhhcCchheeehhhccccceeeccccCCcchhhhhhhhcccccc
Confidence 999999999886 33799999999999999998766652 224799998887643
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.59 E-value=4.3e-06 Score=85.73 Aligned_cols=256 Identities=15% Similarity=0.104 Sum_probs=143.6
Q ss_pred EEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEE-ecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 157 SAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEF-HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 157 ~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~-~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
..++|.++|+ |+|+... ...++.+.. ++...... ...... .+++++|||+.++- ....
T Consensus 43 EG~~~D~~G~-Ly~~D~~---~g~I~ri~p~g~~~~~~~~~~~~~p----------~gla~~~dG~l~va--~~~~---- 102 (319)
T d2dg1a1 43 EGLNFDRQGQ-LFLLDVF---EGNIFKINPETKEIKRPFVSHKANP----------AAIKIHKDGRLFVC--YLGD---- 102 (319)
T ss_dssp EEEEECTTSC-EEEEETT---TCEEEEECTTTCCEEEEEECSSSSE----------EEEEECTTSCEEEE--ECTT----
T ss_pred EeCEECCCCC-EEEEECC---CCEEEEEECCCCeEEEEEeCCCCCe----------eEEEECCCCCEEEE--ecCC----
Confidence 4689999997 7666432 235777773 33333332 222233 58899999974432 2110
Q ss_pred CccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEecc-CCCCCCccceEEEeeCCCCCccEE
Q 003363 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~~~~wSPDg~~~~~~l 313 (826)
......|+.++..++....+. ..........+++.|||+ |
T Consensus 103 ----------------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~-----l 143 (319)
T d2dg1a1 103 ----------------------------------FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-----F 143 (319)
T ss_dssp ----------------------------------SSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-----E
T ss_pred ----------------------------------CccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccc-----e
Confidence 002356778888777765542 122233566789999997 7
Q ss_pred EEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccC
Q 003363 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (826)
Q Consensus 314 vf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~ 393 (826)
+++...... .+....+|+++. +++..+.+.........+.|||||+.|++....
T Consensus 144 ~vtd~~~~~--------~~~~g~v~~~~~-----------------dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~- 197 (319)
T d2dg1a1 144 YFTDFRGYS--------TNPLGGVYYVSP-----------------DFRTVTPIIQNISVANGIALSTDEKVLWVTETT- 197 (319)
T ss_dssp EEEECCCBT--------TBCCEEEEEECT-----------------TSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG-
T ss_pred eeccccccc--------ccCcceeEEEec-----------------ccceeEEEeeccceeeeeeeccccceEEEeccc-
Confidence 776532211 112346888886 566666665554455678999999988776643
Q ss_pred CCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003363 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (826)
Q Consensus 394 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~v 473 (826)
..+|++++++..+......... .... . ..+. ....+++.+||+ |+++.. +...|.++
T Consensus 198 ---------~~~I~~~d~~~~g~~~~~~~~~--~~~~-~---~~~~-----~PdGl~vD~~G~-l~Va~~--~~g~V~~~ 254 (319)
T d2dg1a1 198 ---------ANRLHRIALEDDGVTIQPFGAT--IPYY-F---TGHE-----GPDSCCIDSDDN-LYVAMY--GQGRVLVF 254 (319)
T ss_dssp ---------GTEEEEEEECTTSSSEEEEEEE--EEEE-C---CSSS-----EEEEEEEBTTCC-EEEEEE--TTTEEEEE
T ss_pred ---------CCceEEEEEcCCCceeccccce--eeec-c---CCcc-----ceeeeeEcCCCC-EEEEEc--CCCEEEEE
Confidence 3679999987654321111100 0000 0 0000 122467778887 666543 33467888
Q ss_pred ECCCCcEEEecCCCC------CeeeEEEeecCCEEEEEEeCCCCCC--eEEEEee
Q 003363 474 NVSSGELLRITPAES------NFSWSLLTLDGDNIIAVSSSPVDVP--QVKYGYF 520 (826)
Q Consensus 474 dl~tg~~~~lt~~~~------~~~~~~~s~dg~~l~~~~s~~~~p~--~l~~~~~ 520 (826)
|.++..+.++..... ......+.++.+.++.+..+...+. .||.++.
T Consensus 255 ~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~ 309 (319)
T d2dg1a1 255 NKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 309 (319)
T ss_dssp CTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred CCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence 876544555543221 1233456666777777765544443 3555543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.58 E-value=3.8e-06 Score=87.89 Aligned_cols=86 Identities=8% Similarity=-0.039 Sum_probs=46.4
Q ss_pred ccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCcccc
Q 003363 374 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 453 (826)
Q Consensus 374 ~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~ 453 (826)
.....+||||++|+ .+++... ......|..++....+.. .....+......+. ....+.++|
T Consensus 257 ~~~i~~spdG~~ly-vsnr~~~----~~~~~~i~~~~~~~~g~~------~~~~~~~~~~~~G~-------~p~~i~~~p 318 (365)
T d1jofa_ 257 ADVCALTFSGKYMF-ASSRANK----FELQGYIAGFKLRDCGSI------EKQLFLSPTPTSGG-------HSNAVSPCP 318 (365)
T ss_dssp EEEEEECTTSSEEE-EEEEESS----TTSCCEEEEEEECTTSCE------EEEEEEEECSSCCT-------TCCCEEECT
T ss_pred ccceEECCCCCEEE-EEcccCC----CccceEEEEEEecCCCce------eeEeEeeEEEcCCC-------CccEEEecC
Confidence 34578999999875 5544210 011234555555443221 01111111111111 223567887
Q ss_pred -CCCEEEEEEEeCCeEEEEEEECCC
Q 003363 454 -DGCTMLLSSIWGSSQVIISVNVSS 477 (826)
Q Consensus 454 -Dg~~l~~~~~~~~~~~l~~vdl~t 477 (826)
||++||++...++...+|.++-.+
T Consensus 319 ~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 319 WSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp TCTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 899888876667888888887554
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.57 E-value=7.1e-06 Score=84.10 Aligned_cols=297 Identities=11% Similarity=0.044 Sum_probs=147.8
Q ss_pred ceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccc
Q 003363 125 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHG 202 (826)
Q Consensus 125 ~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g 202 (826)
.+..+.+|++.+ +.....|.... ..+...+|||++ .|+....++ .+.+|+ .............. .
T Consensus 31 ~Dg~i~vWd~~~-~~~~~~l~~H~-----~~V~~l~~s~~~-~l~s~s~D~-----~i~iw~~~~~~~~~~~~~~~~~-~ 97 (355)
T d1nexb2 31 DDKMIRVYDSIN-KKFLLQLSGHD-----GGVWALKYAHGG-ILVSGSTDR-----TVRVWDIKKGCCTHVFEGHNST-V 97 (355)
T ss_dssp TTTEEEEEETTT-TEEEEEEECCS-----SCEEEEEEETTT-EEEEEETTC-----CEEEEETTTTEEEEEECCCSSC-E
T ss_pred CCCeEEEEECCC-CcEEEEEECCC-----CCEEEEEEcCCC-EEEEEeccc-----cccccccccccccccccccccc-c
Confidence 345677777632 22233343333 468899999975 566554432 456663 22222222211111 0
Q ss_pred cccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCC--------ccCCCC-------------CCcceeec
Q 003363 203 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSD--------KDCNSW-------------KGQGDWEE 261 (826)
Q Consensus 203 ~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-------------~~~~~~~~ 261 (826)
......++++++.|+..+.+..... |+.......... ...... ..-..+.+
T Consensus 98 ------~~~~~~~~~~~~~~~~~~~d~~i~i--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (355)
T d1nexb2 98 ------RCLDIVEYKNIKYIVTGSRDNTLHV--WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG 169 (355)
T ss_dssp ------EEEEEEEETTEEEEEEEETTSEEEE--EECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEE
T ss_pred ------cccccccccccceeeeecCCCcEEE--EEccCCceeccccccceeccceeccccccceeeeeeecccccccccc
Confidence 1135668899988888776553321 111000000000 000000 00001222
Q ss_pred CCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEE
Q 003363 262 DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 341 (826)
Q Consensus 262 d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d 341 (826)
+....+.+.....|.+||+.+++..... ...........|+|+++. ++..+ .+..|+.+|
T Consensus 170 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~---------------~d~~i~i~d 229 (355)
T d1nexb2 170 HGNIVVSGSYDNTLIVWDVAQMKCLYIL-SGHTDRIYSTIYDHERKR----CISAS---------------MDTTIRIWD 229 (355)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEETTTTE----EEEEE---------------TTSCEEEEE
T ss_pred ccceeeeecccceeeeeecccccceeee-ecccccccccccccccee----eeccc---------------ccceEEeee
Confidence 2222233344578899999888765442 233445667899999997 76655 234688888
Q ss_pred cccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcc
Q 003363 342 VSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL 420 (826)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~ 420 (826)
+ .++. ...+..+...+....|+ +++|+..+.+ ..|.+||+.+.... +.
T Consensus 230 ~-----------------~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~d-----------g~i~iwd~~~~~~~-~~ 278 (355)
T d1nexb2 230 L-----------------ENGELMYTLQGHTALVGLLRLS--DKFLVSAAAD-----------GSIRGWDANDYSRK-FS 278 (355)
T ss_dssp T-----------------TTCCEEEEECCCSSCCCEEEEC--SSEEEEECTT-----------SEEEEEETTTCCEE-EE
T ss_pred c-----------------cccccccccccccccccccccc--cceeeeeecc-----------ccccccccccccee-cc
Confidence 7 4443 45555556666666665 5677655543 45889998764321 10
Q ss_pred cceeeeeeeeeccCCCCCcccccCCCCC-CccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe-cCCCCCeeeEEEeec
Q 003363 421 EKIVDVIPVVQCAEGDCFPGLYSSSILS-NPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI-TPAESNFSWSLLTLD 498 (826)
Q Consensus 421 ~~~~~~~~~~~~~~~~~f~g~~~~~~~~-~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~l-t~~~~~~~~~~~s~d 498 (826)
. ....... ..++++++ ++++.. ++ .|..+|+.+|+..+. ..... .....++.+
T Consensus 279 ~--------------------~~~~~~~~~~~~~~~~-~l~~g~-d~--~i~vwd~~tg~~~~~~~~~~~-~~V~~v~~~ 333 (355)
T d1nexb2 279 Y--------------------HHTNLSAITTFYVSDN-ILVSGS-EN--QFNIYNLRSGKLVHANILKDA-DQIWSVNFK 333 (355)
T ss_dssp E--------------------ECTTCCCCCEEEECSS-EEEEEE-TT--EEEEEETTTCCBCCSCTTTTC-SEEEEEEEE
T ss_pred c--------------------ccCCceEEEEEcCCCC-EEEEEe-CC--EEEEEECCCCCEEEEEecCCC-CCEEEEEEc
Confidence 0 0011222 34567776 444433 44 567779988886532 22222 122233444
Q ss_pred CCEEEEEEeCCCCCCeEEEEe
Q 003363 499 GDNIIAVSSSPVDVPQVKYGY 519 (826)
Q Consensus 499 g~~l~~~~s~~~~p~~l~~~~ 519 (826)
++.+++..+. +..-.|++.|
T Consensus 334 ~~~~~~~~s~-dg~~~l~~~d 353 (355)
T d1nexb2 334 GKTLVAAVEK-DGQSFLEILD 353 (355)
T ss_dssp TTEEEEEEES-SSCEEEEEEE
T ss_pred CCeEEEEEEC-CCcEEEEEEe
Confidence 5666555443 3323345444
|
| >d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Erythromycin polyketide synthase species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=98.56 E-value=1.3e-07 Score=93.99 Aligned_cols=208 Identities=13% Similarity=0.075 Sum_probs=111.5
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHH-HHHHHcCCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI-DHVIDMGLA 668 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i-~~l~~~~~~ 668 (826)
...|.++++||.........|..++..|.. .+.|+.++++|. +.. .....+++++.+.+ +.+.+. .
T Consensus 40 ~~~~~l~c~~~~~~gg~~~~y~~La~~L~~-~~~V~al~~pG~---~~~-------e~~~~s~~~~a~~~~~~i~~~--~ 106 (255)
T d1mo2a_ 40 PGEVTVICCAGTAAISGPHEFTRLAGALRG-IAPVRAVPQPGY---EEG-------EPLPSSMAAVAAVQADAVIRT--Q 106 (255)
T ss_dssp SCSSEEEEECCCSSSCSGGGGHHHHHHHTT-TCCEEEECCTTS---STT-------CCEESSHHHHHHHHHHHHHHT--T
T ss_pred CCCCeEEEECCCCCCCCHHHHHHHHHhcCC-CceEEEEeCCCc---CCC-------CCCCCCHHHHHHHHHHHHHHh--C
Confidence 456889999974322235578888888865 489999999983 322 11122456655543 444443 3
Q ss_pred CCCcEEEEEecchHHHHHHHHHhC---CCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhH--
Q 003363 669 NPSKVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDL-- 743 (826)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~a~~~---p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 743 (826)
...++.|+|||+||.++..+|.+. ...+..++++.+........ ...|. ....................
T Consensus 107 ~~~P~~L~GhS~Gg~vA~e~A~~l~~~g~~v~~lvlld~~~p~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~l~a 180 (255)
T d1mo2a_ 107 GDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYPPGHQDA----MNAWL--EELTATLFDRETVRMDDTRLTA 180 (255)
T ss_dssp SSSCEEEEECSTTHHHHHHHHHHHHHHTCCCSEEEEEECSCSSHHHH----HHHHH--HHHHTTCC----CCCCHHHHHH
T ss_pred CCCCEEEEEeCCcHHHHHHHHHhhHhcCCCccEEEEECCCCCCCccc----hhhHH--HHHHHHhhccccccCCHHHHHH
Confidence 346799999999999999988754 34577777665432110000 00000 00000000000000111111
Q ss_pred -HHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 744 -TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 744 -~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
..+...-.......+.+|++++.+.+|........ . .......++++.+|| +|.....+........|.+||.
T Consensus 181 ~~~~~~~~~~~~~~~~~~p~l~v~a~~~~~~~~~~~--w---~~~~~~~~~~~~v~G-~H~~ml~~~~~~~A~~i~~~L~ 254 (255)
T d1mo2a_ 181 LGAYDRLTGQWRPRETGLPTLLVSAGEPMGPWPDDS--W---KPTWPFEHDTVAVPG-DHFTMVQEHADAIARHIDAWLG 254 (255)
T ss_dssp HHHHHHHHHHCCCCCCCCCEEEEECCSSSSCCTTCC--C---CCCCCSSCEEEECCS-CCSSCSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCccccceEEEeecCCCCCcchhhH--H---HHhCCCCcEEEEECC-CCcccccccHHHHHHHHHHHhC
Confidence 11111111112356789999999988765433211 1 111234688889987 6753333555577788888874
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.47 E-value=2.2e-05 Score=79.08 Aligned_cols=237 Identities=15% Similarity=0.147 Sum_probs=139.0
Q ss_pred EEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCc
Q 003363 157 SAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 236 (826)
Q Consensus 157 ~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~ 236 (826)
..|.|.+....|+|+.-. ...++.++..+....+..++... .++.+.+||+.++- .
T Consensus 21 Egp~wd~~~~~l~wvDi~---~~~I~r~d~~~g~~~~~~~~~~~----------~~i~~~~dg~l~va-~---------- 76 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNIL---ERELHELHLASGRKTVHALPFMG----------SALAKISDSKQLIA-S---------- 76 (295)
T ss_dssp EEEEEETTTTEEEEEEGG---GTEEEEEETTTTEEEEEECSSCE----------EEEEEEETTEEEEE-E----------
T ss_pred eCCeEECCCCEEEEEECC---CCEEEEEECCCCeEEEEECCCCc----------EEEEEecCCCEEEE-E----------
Confidence 469999988899988532 23577777444444556665554 67888899875543 1
Q ss_pred cCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCC---CCccceEEEeeCCCCCccEE
Q 003363 237 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~---~~~~~~~~wSPDg~~~~~~l 313 (826)
...|+++|.++++.+.+..... .....+....|+|+ |
T Consensus 77 -----------------------------------~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~-----i 116 (295)
T d2ghsa1 77 -----------------------------------DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-----L 116 (295)
T ss_dssp -----------------------------------TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-----E
T ss_pred -----------------------------------eCccEEeecccceeeEEeeeecCCCcccceeeEECCCCC-----E
Confidence 1358999999999887731221 22456788999998 7
Q ss_pred EEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccC
Q 003363 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (826)
Q Consensus 314 vf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~ 393 (826)
+|........ .....+|+++ .++.+.+.........+.||||++.|++.....
T Consensus 117 w~~~~~~~~~--------~~~g~l~~~~-------------------~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~ 169 (295)
T d2ghsa1 117 WIGTMGRKAE--------TGAGSIYHVA-------------------KGKVTKLFADISIPNSICFSPDGTTGYFVDTKV 169 (295)
T ss_dssp EEEEEETTCC--------TTCEEEEEEE-------------------TTEEEEEEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred EEEecccccc--------ccceeEeeec-------------------CCcEEEEeeccCCcceeeecCCCceEEEeeccc
Confidence 7765332211 1222455554 244555544444456789999999998887543
Q ss_pred CCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003363 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (826)
Q Consensus 394 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~v 473 (826)
..|++++++....... ........ .+.... ....++...+|. |+++. +. ...|+++
T Consensus 170 ----------~~I~~~~~d~~~~~~~-~~~~~~~~---~~~~~g-------~pdG~~vD~~Gn-lWva~-~~-~g~V~~~ 225 (295)
T d2ghsa1 170 ----------NRLMRVPLDARTGLPT-GKAEVFID---STGIKG-------GMDGSVCDAEGH-IWNAR-WG-EGAVDRY 225 (295)
T ss_dssp ----------CEEEEEEBCTTTCCBS-SCCEEEEE---CTTSSS-------EEEEEEECTTSC-EEEEE-ET-TTEEEEE
T ss_pred ----------ceeeEeeecccccccc-cceEEEec---cCcccc-------cccceEEcCCCC-EEeee-eC-CCceEEe
Confidence 5699988765332111 11100111 110000 122456677886 65543 22 2367888
Q ss_pred ECCCCcEEEecCCCCCeeeEEEe-ecCCEEEEEEeC
Q 003363 474 NVSSGELLRITPAESNFSWSLLT-LDGDNIIAVSSS 508 (826)
Q Consensus 474 dl~tg~~~~lt~~~~~~~~~~~s-~dg~~l~~~~s~ 508 (826)
|.++..+..+...........|- +|.+.|++++..
T Consensus 226 dp~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 226 DTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp CTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred cCCCcEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence 98766666665544434444453 466777766544
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.47 E-value=3e-05 Score=78.51 Aligned_cols=227 Identities=13% Similarity=0.128 Sum_probs=122.0
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~ 235 (826)
...++++|||+ |++... ...+++.+..++....+....... .+++|+|||+ |+.....
T Consensus 30 ~e~iAv~pdG~-l~vt~~---~~~~I~~i~p~g~~~~~~~~~~~~----------~gla~~~dG~-l~v~~~~------- 87 (302)
T d2p4oa1 30 LENLASAPDGT-IFVTNH---EVGEIVSITPDGNQQIHATVEGKV----------SGLAFTSNGD-LVATGWN------- 87 (302)
T ss_dssp EEEEEECTTSC-EEEEET---TTTEEEEECTTCCEEEEEECSSEE----------EEEEECTTSC-EEEEEEC-------
T ss_pred cCCEEECCCCC-EEEEeC---CCCEEEEEeCCCCEEEEEcCCCCc----------ceEEEcCCCC-eEEEecC-------
Confidence 55789999997 444432 234688887666666666655554 7899999998 3333221
Q ss_pred ccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEcc--CCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003363 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ--SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~--~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (826)
...|++++.. .+....+...+.......+++.+||+ +
T Consensus 88 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~-----~ 126 (302)
T d2p4oa1 88 ------------------------------------ADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ-----Y 126 (302)
T ss_dssp ------------------------------------TTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE-----E
T ss_pred ------------------------------------CceEEEEEecccccceeeccccCCccccceeEEccCCC-----E
Confidence 1234444443 34444442233334456788999987 5
Q ss_pred EEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCccee---------cCCCCccccCceecCCCC
Q 003363 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN---------LTESISSAFFPRFSPDGK 384 (826)
Q Consensus 314 vf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---------Lt~~~~~~~~p~~SpDG~ 384 (826)
++.. . ....+|.++. .++.... ..........--.+.|+.
T Consensus 127 ~v~~-~-------------~~~~i~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~ 175 (302)
T d2p4oa1 127 LTAD-S-------------YRGAIWLIDV-----------------VQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN 175 (302)
T ss_dssp EEEE-T-------------TTTEEEEEET-----------------TTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT
T ss_pred Eeec-c-------------ccccceeeec-----------------cCCcceeEecCCccceeeccCcccccccccccCC
Confidence 4443 1 2235677765 2222111 000111111112455777
Q ss_pred EEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEe
Q 003363 385 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 464 (826)
Q Consensus 385 ~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~ 464 (826)
.|++.... ...|++++............. .. ......+++.+||+ ||++...
T Consensus 176 ~l~~~~~~----------~~~i~~~~~~~~~~~~~~~~~---~~--------------~~~pdgia~d~dG~-l~va~~~ 227 (302)
T d2p4oa1 176 FLYVSNTE----------KMLLLRIPVDSTDKPGEPEIF---VE--------------QTNIDDFAFDVEGN-LYGATHI 227 (302)
T ss_dssp EEEEEETT----------TTEEEEEEBCTTSCBCCCEEE---EE--------------SCCCSSEEEBTTCC-EEEECBT
T ss_pred ceeeecCC----------CCeEEeccccccccccccccc---cC--------------CCCCcceEECCCCC-EEEEEcC
Confidence 77766543 367999988765432111000 00 01234688999997 6665432
Q ss_pred CCeEEEEEEECCCCcEEEecC-C--CCCeeeEEE---eecCCEEEEEEe
Q 003363 465 GSSQVIISVNVSSGELLRITP-A--ESNFSWSLL---TLDGDNIIAVSS 507 (826)
Q Consensus 465 ~~~~~l~~vdl~tg~~~~lt~-~--~~~~~~~~~---s~dg~~l~~~~s 507 (826)
...|++++.+ |+...+.. . ........| ++|++.||++..
T Consensus 228 --~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~ 273 (302)
T d2p4oa1 228 --YNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 273 (302)
T ss_dssp --TCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred --CCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence 3458888875 45444432 2 122344567 557777776654
|
| >d2dsta1 c.69.1.39 (A:2-123) Hypothetical protein TTHA1544 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: TTHA1544-like domain: Hypothetical protein TTHA1544 species: Thermus thermophilus [TaxId: 274]
Probab=98.44 E-value=9.8e-08 Score=81.84 Aligned_cols=83 Identities=17% Similarity=0.241 Sum_probs=58.2
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
..|.||++||... .|. ..| .++|.|+++|+|| +|.+.. + ....+++.+.+..+++. ++.
T Consensus 20 ~G~pvlllHG~~~-----~w~---~~L-~~~yrvi~~DlpG---~G~S~~---p----~~s~~~~a~~i~~ll~~--L~i 78 (122)
T d2dsta1 20 KGPPVLLVAEEAS-----RWP---EAL-PEGYAFYLLDLPG---YGRTEG---P----RMAPEELAHFVAGFAVM--MNL 78 (122)
T ss_dssp CSSEEEEESSSGG-----GCC---SCC-CTTSEEEEECCTT---STTCCC---C----CCCHHHHHHHHHHHHHH--TTC
T ss_pred CCCcEEEEecccc-----ccc---ccc-cCCeEEEEEeccc---cCCCCC---c----ccccchhHHHHHHHHHH--hCC
Confidence 4477999998432 121 223 5799999999999 554421 1 23456666666666666 456
Q ss_pred CcEEEEEecchHHHHHHHHHhCCC
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPD 694 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~ 694 (826)
++..|+|||+||.+++++++..+.
T Consensus 79 ~~~~viG~S~Gg~ia~~laa~~~~ 102 (122)
T d2dsta1 79 GAPWVLLRGLGLALGPHLEALGLR 102 (122)
T ss_dssp CSCEEEECGGGGGGHHHHHHTTCC
T ss_pred CCcEEEEeCccHHHHHHHHhhccc
Confidence 789999999999999999987654
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.41 E-value=2.6e-05 Score=83.32 Aligned_cols=230 Identities=10% Similarity=0.119 Sum_probs=131.7
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (826)
.+.++||||++|||..... | .....|+++|+++|+.....
T Consensus 128 ~~~~~Spd~~~la~s~d~~----------------------------------G-----~e~~~l~v~Dl~tg~~~~~~- 167 (430)
T d1qfma1 128 RGYAFSEDGEYFAYGLSAS----------------------------------G-----SDWVTIKFMKVDGAKELPDV- 167 (430)
T ss_dssp EEEEECTTSSEEEEEEEET----------------------------------T-----CSCEEEEEEETTTTEEEEEE-
T ss_pred cceEecCCCCEEEEEeccc----------------------------------c-----CchheeEEeccCcceecccc-
Confidence 4678999999999986654 1 14578999999999865431
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCcce-eeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc--eec
Q 003363 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETR-KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNL 367 (826)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~-~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~L 367 (826)
++ ....+.++|++|++. |+|+....... ..+..-..+++..+|+..+. +... ..+
T Consensus 168 i~-~~~~~~~~W~~D~~~----~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lg-----------------t~~~~d~~v 225 (430)
T d1qfma1 168 LE-RVKFSCMAWTHDGKG----MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLG-----------------TDQSEDILC 225 (430)
T ss_dssp EE-EECSCCEEECTTSSE----EEEEECCCCSSCCSSSCCCCCCCCEEEEEETT-----------------SCGGGCEEE
T ss_pred cc-cccccceEEcCCCCE----EEEEEeccccCcccccccccCCcceEEEEECC-----------------CCccccccc
Confidence 11 223367899999999 99887543211 11111224566789999883 3222 233
Q ss_pred CCC---CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccC
Q 003363 368 TES---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS 444 (826)
Q Consensus 368 t~~---~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~ 444 (826)
... .........|+||++|+....... .....+|..|+........... ...+++.. .+.
T Consensus 226 ~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~------~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~-~~~-------- 288 (430)
T d1qfma1 226 AEFPDEPKWMGGAELSDDGRYVLLSIREGC------DPVNRLWYCDLQQESNGITGIL--KWVKLIDN-FEG-------- 288 (430)
T ss_dssp ECCTTCTTCEEEEEECTTSCEEEEEEECSS------SSCCEEEEEEGGGSSSSSCSSC--CCEEEECS-SSS--------
T ss_pred cccccCCceEEeeeccCCcceeeEEeeccC------CccEEEEEeeCCCccccccccc--ceeEeecc-ccc--------
Confidence 222 122345667999999876665431 2346788888765332111000 01111110 000
Q ss_pred CCCCCc-cccCCCEEEEEEEeC-CeEEEEEEECCCCc---EEEecCC-CCCeeeEEEeecCCEEEEEEeCCCCCCeEEEE
Q 003363 445 SILSNP-WLSDGCTMLLSSIWG-SSQVIISVNVSSGE---LLRITPA-ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYG 518 (826)
Q Consensus 445 ~~~~~~-ws~Dg~~l~~~~~~~-~~~~l~~vdl~tg~---~~~lt~~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~ 518 (826)
... ...+|..+++.+... .+..|+.++++... .+.+.+. ........++..++.+++.... +.-++|.+.
T Consensus 289 ---~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~-~~~~~l~v~ 364 (430)
T d1qfma1 289 ---EYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH-DVKNTLQLH 364 (430)
T ss_dssp ---CEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE-TTEEEEEEE
T ss_pred ---ceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEc-CCEeEEEEE
Confidence 111 223556677776654 35689999987643 3444443 3334444566667777665543 455668888
Q ss_pred eeccc
Q 003363 519 YFVDK 523 (826)
Q Consensus 519 ~~~~~ 523 (826)
++.++
T Consensus 365 ~~~~~ 369 (430)
T d1qfma1 365 DLATG 369 (430)
T ss_dssp ETTTC
T ss_pred ECCCC
Confidence 76544
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.34 E-value=2.8e-05 Score=79.20 Aligned_cols=267 Identities=11% Similarity=0.053 Sum_probs=139.4
Q ss_pred ccEEEEeCCCCCeEEEEecCCC----CCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPEN----ESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~ 230 (826)
+...|+|.|||+ |+++..... ...+++.+...+.....+..+.... ..+.-.++.|+|||..|+.. ..
T Consensus 19 g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~----~~g~P~Gl~~~~dg~~l~va-d~-- 90 (314)
T d1pjxa_ 19 GAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNG----YGGIPAGCQCDRDANQLFVA-DM-- 90 (314)
T ss_dssp TCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETT----EECCEEEEEECSSSSEEEEE-ET--
T ss_pred CCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEEECCcccc----CCCcceeEEEeCCCCEEEEE-EC--
Confidence 466799999997 555543321 1235777763333333332211100 00011478999999866553 21
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCC--C-ccceEEEeeCCC
Q 003363 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS--L-SVGQVVWAPLNE 307 (826)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~--~-~~~~~~wSPDg~ 307 (826)
...|+++|.+++....+...... . ...++++.|||+
T Consensus 91 -----------------------------------------~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~ 129 (314)
T d1pjxa_ 91 -----------------------------------------RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN 129 (314)
T ss_dssp -----------------------------------------TTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC
T ss_pred -----------------------------------------CCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC
Confidence 14588899887765544211111 1 356789999997
Q ss_pred CCccEEEEEeecCcceee-eeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCC--
Q 003363 308 GLHQYLVFVGWSSETRKL-GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK-- 384 (826)
Q Consensus 308 ~~~~~lvf~~~~~~~~~~-g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~-- 384 (826)
|+|+......... ...........||+++. + ++...+...........|+||++
T Consensus 130 -----lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-----------------d-g~~~~~~~~~~~pNGi~~~~d~d~~ 186 (314)
T d1pjxa_ 130 -----LWITAPAGEVAPADYTRSMQEKFGSIYCFTT-----------------D-GQMIQVDTAFQFPNGIAVRHMNDGR 186 (314)
T ss_dssp -----EEEEECBCBCTTSCCCBTTSSSCEEEEEECT-----------------T-SCEEEEEEEESSEEEEEEEECTTSC
T ss_pred -----EEEecCccCcccccccceeccCCceEEEEee-----------------c-CceeEeeCCcceeeeeEECCCCCcc
Confidence 8776422110000 00000122346888875 3 34444433333344578999875
Q ss_pred --EEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEE
Q 003363 385 --FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 462 (826)
Q Consensus 385 --~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~ 462 (826)
+|+ .+.. ....|+++|+...+.. ....+.. ..+.... .....+++..||+ ||++.
T Consensus 187 ~~~ly-v~d~---------~~~~i~~~d~~~~g~~----~~~~~~~--~~~~~~~------~~pdGiavD~~Gn-lyVa~ 243 (314)
T d1pjxa_ 187 PYQLI-VAET---------PTKKLWSYDIKGPAKI----ENKKVWG--HIPGTHE------GGADGMDFDEDNN-LLVAN 243 (314)
T ss_dssp EEEEE-EEET---------TTTEEEEEEEEETTEE----EEEEEEE--ECCCCSS------CEEEEEEEBTTCC-EEEEE
T ss_pred eeEEE-EEee---------cccceEEeeccCcccc----ceeeEEE--Ecccccc------ccceeeEEecCCc-EEEEE
Confidence 444 4322 2367999987654321 0001110 0000000 0122467788897 66553
Q ss_pred EeCCeEEEEEEECCCCcEE-EecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 003363 463 IWGSSQVIISVNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 463 ~~~~~~~l~~vdl~tg~~~-~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 521 (826)
. +...|+++|.++++.. .+...........|.+|++.|+++.+.. ..|+.+++.
T Consensus 244 ~--~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~---g~i~~~~~~ 298 (314)
T d1pjxa_ 244 W--GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHEN---NAVWKFEWQ 298 (314)
T ss_dssp E--TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTT---TEEEEEECS
T ss_pred c--CCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCC---CcEEEEECC
Confidence 2 3457888899888754 3443333345567888888877665433 357777653
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.25 E-value=6e-06 Score=86.99 Aligned_cols=199 Identities=8% Similarity=-0.030 Sum_probs=95.4
Q ss_pred EEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCC-
Q 003363 99 WTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENE- 177 (826)
Q Consensus 99 ~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~- 177 (826)
..+...+|||+++ |..+.. ...+.++++ ...+..+...-|.. .+....++||||+++++....+..
T Consensus 74 ~s~t~gtpDGr~l-fV~d~~-------~~rVavIDl--~t~k~~~ii~iP~g---~gphgi~~spdg~t~YV~~~~~~~v 140 (441)
T d1qnia2 74 ISMTDGRYDGKYL-FINDKA-------NTRVARIRL--DIMKTDKITHIPNV---QAIHGLRLQKVPKTNYVFCNAEFVI 140 (441)
T ss_dssp EEEETTEEEEEEE-EEEETT-------TTEEEEEET--TTTEEEEEEECTTC---CCEEEEEECCSSBCCEEEEEECSCE
T ss_pred cceecccCCCCEE-EEEcCC-------CCEEEEEEC--CCCcEeeEEecCCC---CCccceEEeccCCEEEEEeccCCcc
Confidence 3344557999988 543332 234555554 33333333222211 356778999999987655432210
Q ss_pred -------------CCeEEE-Ee-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCC
Q 003363 178 -------------SPIQFE-LW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK 242 (826)
Q Consensus 178 -------------~~~~~~-i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~ 242 (826)
....+. ++ ...+....+.+.... ..+.|+|||++++..+....... ........
T Consensus 141 ~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p----------~~v~~spdGk~a~vt~~nse~~~-~id~~t~~ 209 (441)
T d1qnia2 141 PQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNL----------DNTDADYTGKYATSTCYNSERAV-DLAGTMRN 209 (441)
T ss_dssp ESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCC----------CCEEECSSSSEEEEEESCTTCCS-SHHHHTCS
T ss_pred cccCcccccccccccceEEeecCccceeeEEEecCCCc----------cceEECCCCCEEEEEecCCCceE-EEeccCcc
Confidence 001122 22 222222233334444 78999999998877665432211 11100000
Q ss_pred CCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcc
Q 003363 243 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 322 (826)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~ 322 (826)
. ........|.....+.++.+ ...-.....+.+.+..+.++... ++..-....+..||||++ ++..+ .
T Consensus 210 ~-~d~i~v~n~p~~~~~~~dGk-~~~v~~~~v~vvd~~~~~~v~~~--IPvgksPhGv~vSPDGky----l~~~~-~--- 277 (441)
T d1qnia2 210 D-RDWVVVFNVERIAAAVKAGN-FKTIGDSKVPVVDGRGESEFTRY--IPVPKNPHGLNTSPDGKY----FIANG-K--- 277 (441)
T ss_dssp S-BCEEEEEEHHHHHHHHHTTC-CBCCTTCCCCEEECSSSCSSEEE--ECCBSSCCCEEECTTSCE----EEEEC-T---
T ss_pred e-EEEEEeCCccceEEEecCCC-EEEeCCCCcEEEEcccCCceEEE--EeCCCCccCceECCCCCE----EEEeC-C---
Confidence 0 00000111112222344422 22222233444444444444433 344445678999999997 65554 2
Q ss_pred eeeeeeeeccCCCceEEEEcc
Q 003363 323 RKLGIKYCYNRPCALYAVRVS 343 (826)
Q Consensus 323 ~~~g~~~~~~~~~~l~~~d~~ 343 (826)
....+.++|+.
T Consensus 278 ----------~~~tvsv~d~~ 288 (441)
T d1qnia2 278 ----------LSPTVSVIAID 288 (441)
T ss_dssp ----------TSSBEEEEEGG
T ss_pred ----------cCCcEEEEEee
Confidence 23378888873
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.25 E-value=1.9e-05 Score=80.72 Aligned_cols=271 Identities=7% Similarity=-0.008 Sum_probs=132.1
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCcc
Q 003363 160 VPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 237 (826)
Q Consensus 160 ~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~ 237 (826)
.+++||++||..+.++ .+.+|+ .++..+.+. +..+.| ..++|+||+ .|+..+.+..... |.
T Consensus 18 c~~~~~~~l~tgs~Dg-----~i~vWd~~~~~~~~~l~---~H~~~V------~~l~~s~~~-~l~s~s~D~~i~i--w~ 80 (355)
T d1nexb2 18 CLQFEDNYVITGADDK-----MIRVYDSINKKFLLQLS---GHDGGV------WALKYAHGG-ILVSGSTDRTVRV--WD 80 (355)
T ss_dssp EEEEETTEEEEEETTT-----EEEEEETTTTEEEEEEE---CCSSCE------EEEEEETTT-EEEEEETTCCEEE--EE
T ss_pred EEEECCCEEEEEeCCC-----eEEEEECCCCcEEEEEE---CCCCCE------EEEEEcCCC-EEEEEeccccccc--cc
Confidence 4677899988765543 577884 333333332 222333 789999976 5776666654332 22
Q ss_pred CCCCCCCC--CCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCC----------CCC----------
Q 003363 238 LGSTKGGS--SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP----------KSL---------- 295 (826)
Q Consensus 238 ~~~~~~~~--~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~----------~~~---------- 295 (826)
........ .............+.++......+.....|.+||+.++......+.. ...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
T d1nexb2 81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 160 (355)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred ccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeec
Confidence 11110000 00000000111223344323344445678999998776533221000 000
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccc
Q 003363 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSA 374 (826)
Q Consensus 296 ~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~ 374 (826)
...-..+.++++. ++... .+..|..+|+ .+++ ...........
T Consensus 161 ~~~v~~~~~~~~~----~~~~~---------------~d~~i~~~d~-----------------~~~~~~~~~~~~~~~~ 204 (355)
T d1nexb2 161 MASVRTVSGHGNI----VVSGS---------------YDNTLIVWDV-----------------AQMKCLYILSGHTDRI 204 (355)
T ss_dssp SSCEEEEEEETTE----EEEEE---------------TTSCEEEEET-----------------TTTEEEEEECCCSSCE
T ss_pred cccccccccccce----eeeec---------------ccceeeeeec-----------------ccccceeeeecccccc
Confidence 0011234555553 33332 3346788887 3443 33444455567
Q ss_pred cCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccC
Q 003363 375 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 454 (826)
Q Consensus 375 ~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~D 454 (826)
....|+|+++.++..+.+ ..|.++|+.++........ +...+..+.|+
T Consensus 205 ~~~~~~~~~~~~~~~~~d-----------~~i~i~d~~~~~~~~~~~~-------------------h~~~v~~~~~~-- 252 (355)
T d1nexb2 205 YSTIYDHERKRCISASMD-----------TTIRIWDLENGELMYTLQG-------------------HTALVGLLRLS-- 252 (355)
T ss_dssp EEEEEETTTTEEEEEETT-----------SCEEEEETTTCCEEEEECC-------------------CSSCCCEEEEC--
T ss_pred ccccccccceeeeccccc-----------ceEEeeecccccccccccc-------------------ccccccccccc--
Confidence 788999999998877654 3488899877553211110 01122334454
Q ss_pred CCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 455 GCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 455 g~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
++.| ++...++ .|..+|+.++................+++++. +++..++ ..|.+.++.++
T Consensus 253 ~~~l-~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~d----~~i~vwd~~tg 313 (355)
T d1nexb2 253 DKFL-VSAAADG--SIRGWDANDYSRKFSYHHTNLSAITTFYVSDN-ILVSGSE----NQFNIYNLRSG 313 (355)
T ss_dssp SSEE-EEECTTS--EEEEEETTTCCEEEEEECTTCCCCCEEEECSS-EEEEEET----TEEEEEETTTC
T ss_pred ccee-eeeeccc--ccccccccccceecccccCCceEEEEEcCCCC-EEEEEeC----CEEEEEECCCC
Confidence 5544 4444344 45666887766543332222223334555555 5555443 25777776544
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.20 E-value=2.8e-05 Score=77.59 Aligned_cols=200 Identities=11% Similarity=0.032 Sum_probs=107.8
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
.....++++|..++..... .+...+ ..++..+..... . ....++|+++.++....+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~----------~~~~~~~~~~~~~v~~~~~----- 140 (287)
T d1pgua2 83 PKVASANNDGFTAVLTNDD-----DLLILQSFTGDIIKSVRLN--S----------PGSAVSLSQNYVAVGLEEG----- 140 (287)
T ss_dssp EEEEEECSSSEEEEEETTS-----EEEEEETTTCCEEEEEECS--S----------CEEEEEECSSEEEEEETTT-----
T ss_pred eeeeeeccCCceEEEeecc-----cceeeeccceeeeeecccc--c----------eeeeeeccCcceeeecccc-----
Confidence 4556788888777664332 344444 334444433321 2 3556888888888765432
Q ss_pred CccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003363 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (826)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lv 314 (826)
..+.+|++.+.+.......+....+..++|+|||+. |+
T Consensus 141 --------------------------------------~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~----l~ 178 (287)
T d1pgua2 141 --------------------------------------NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY----IA 178 (287)
T ss_dssp --------------------------------------SCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSE----EE
T ss_pred --------------------------------------ceeeeeeccccceeeeeeeccCCceeEEEeccCccc----cc
Confidence 357778876544333211233446778999999997 76
Q ss_pred EEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc--eecCCCCccccCceecCCCCEEEEEecc
Q 003363 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
..+ .+..|+.+|+ .++.. ..+..+...+....|+|+++.......+
T Consensus 179 ~g~---------------~dg~i~i~d~-----------------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 226 (287)
T d1pgua2 179 AGD---------------VMGKILLYDL-----------------QSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE 226 (287)
T ss_dssp EEE---------------TTSCEEEEET-----------------TTTEEEECCSCCCSSCEEEEEECCCC------CCS
T ss_pred ccc---------------ccccccceee-----------------cccccccccccccccccceeeecccccccccccCC
Confidence 654 2336888887 33332 2334445566777888776543222221
Q ss_pred CCC-CCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003363 393 SSV-DSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (826)
Q Consensus 393 ~~~-~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (826)
... ..| .....|++||+....... .... .+...+..+.|+||++ | ++...++...+|
T Consensus 227 ~~~l~sg--s~D~~i~iw~~~~~~~~~---------~~~~---------~h~~~V~~v~~~~~~~-l-~s~g~D~~v~iW 284 (287)
T d1pgua2 227 EDLVATG--SLDTNIFIYSVKRPMKII---------KALN---------AHKDGVNNLLWETPST-L-VSSGADACIKRW 284 (287)
T ss_dssp CCEEEEE--ETTSCEEEEESSCTTCCE---------EETT---------SSTTCEEEEEEEETTE-E-EEEETTSCEEEE
T ss_pred CCeeEee--cCCCeEEEEECCCCCeEE---------EEeC---------CCCCCeEEEEECCCCE-E-EEEECCCeEEEE
Confidence 110 000 112468899986643211 0000 0112345778999874 4 555666777777
Q ss_pred EE
Q 003363 472 SV 473 (826)
Q Consensus 472 ~v 473 (826)
.|
T Consensus 285 ~i 286 (287)
T d1pgua2 285 NV 286 (287)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.19 E-value=6.2e-06 Score=87.16 Aligned_cols=143 Identities=15% Similarity=0.097 Sum_probs=90.2
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCC---CccccccCCCcccceeecCCCCeEEEEeecCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQ---TVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~---~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~ 230 (826)
+..+.||||| .||..+.+ ..+.+|+ .++......... +..+. +..++|||||+.|+..+.+..
T Consensus 187 ~~~v~~s~dg-~lasgs~D-----g~i~iwd~~~~~~~~~~~~~~~l~~h~~~------V~~l~~spdg~~l~sgs~D~t 254 (393)
T d1sq9a_ 187 ATSVDISERG-LIATGFNN-----GTVQISELSTLRPLYNFESQHSMINNSNS------IRSVKFSPQGSLLAIAHDSNS 254 (393)
T ss_dssp CCEEEECTTS-EEEEECTT-----SEEEEEETTTTEEEEEEECCC---CCCCC------EEEEEECSSTTEEEEEEEETT
T ss_pred EEEEEECCCC-EEEEEeCC-----CcEEEEeecccccccccccccccccccce------EEEcccccccceeeeecCCCC
Confidence 5678999998 55544332 2567773 333333332211 12223 388999999999998876541
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEec-cC-----------CCCCCccc
Q 003363 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KG-----------IPKSLSVG 298 (826)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l-~~-----------~~~~~~~~ 298 (826)
...|.+||+++++.... .. ......+.
T Consensus 255 -----------------------------------------~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~ 293 (393)
T d1sq9a_ 255 -----------------------------------------FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 293 (393)
T ss_dssp -----------------------------------------EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEE
T ss_pred -----------------------------------------cceeeecccccceeeeeeccccccccceeeeecccCcee
Confidence 24578888888764432 10 01223467
Q ss_pred eEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCcc----
Q 003363 299 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISS---- 373 (826)
Q Consensus 299 ~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~---- 373 (826)
.++|+|||+. |+-.+ .+..|.++|+ ++++ +..|..+...
T Consensus 294 ~l~fspd~~~----l~S~s---------------~D~~v~vWd~-----------------~~g~~~~~l~gH~~~v~~~ 337 (393)
T d1sq9a_ 294 SLSFNDSGET----LCSAG---------------WDGKLRFWDV-----------------KTKERITTLNMHCDDIEIE 337 (393)
T ss_dssp EEEECSSSSE----EEEEE---------------TTSEEEEEET-----------------TTTEEEEEEECCGGGCSSG
T ss_pred eeccCCCCCe----eEEEC---------------CCCEEEEEEC-----------------CCCCEEEEECCcCCcccCC
Confidence 8999999997 77665 3457999998 5555 4456555433
Q ss_pred ccCceecCCCCEEE
Q 003363 374 AFFPRFSPDGKFLV 387 (826)
Q Consensus 374 ~~~p~~SpDG~~l~ 387 (826)
...+.|+|||+.++
T Consensus 338 ~~~~~~~~~~~~~~ 351 (393)
T d1sq9a_ 338 EDILAVDEHGDSLA 351 (393)
T ss_dssp GGCCCBCTTSCBCS
T ss_pred ccEEEECCCCCEEE
Confidence 34578999998763
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.18 E-value=2.2e-05 Score=82.77 Aligned_cols=134 Identities=15% Similarity=0.072 Sum_probs=78.4
Q ss_pred CCCCcceeecCCCccCCCccCceEEEEEccCCceEec-cC----CCCCCccceEEEeeCCCCCccEEEEEeecCcceeee
Q 003363 252 SWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KG----IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLG 326 (826)
Q Consensus 252 ~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l-~~----~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g 326 (826)
.+.....|++| |..+++..+..|.+||+.+++.... .. ......+..++|||||+. |+..+.+...
T Consensus 185 ~~~~~v~~s~d-g~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~----l~sgs~D~t~---- 255 (393)
T d1sq9a_ 185 QFATSVDISER-GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL----LAIAHDSNSF---- 255 (393)
T ss_dssp CCCCEEEECTT-SEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE----EEEEEEETTE----
T ss_pred CcEEEEEECCC-CEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccce----eeeecCCCCc----
Confidence 34445678887 5666667788999999998875432 10 122346788999999997 7776632211
Q ss_pred eeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceE
Q 003363 327 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSL 406 (826)
Q Consensus 327 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l 406 (826)
..|.++|+..+..... .............+..+...+...+|||||++|+-.+.+ ..|
T Consensus 256 --------~~i~lwd~~~g~~~~~---l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D-----------~~v 313 (393)
T d1sq9a_ 256 --------GCITLYETEFGERIGS---LSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD-----------GKL 313 (393)
T ss_dssp --------EEEEEEETTTCCEEEE---ECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT-----------SEE
T ss_pred --------ceeeecccccceeeee---eccccccccceeeeecccCceeeeccCCCCCeeEEECCC-----------CEE
Confidence 1355666621000000 000000111112233456678889999999998766644 469
Q ss_pred EEEeCCCCCC
Q 003363 407 HRIDWPTNGN 416 (826)
Q Consensus 407 ~~~d~~~~~~ 416 (826)
.+||+.+++.
T Consensus 314 ~vWd~~~g~~ 323 (393)
T d1sq9a_ 314 RFWDVKTKER 323 (393)
T ss_dssp EEEETTTTEE
T ss_pred EEEECCCCCE
Confidence 9999988754
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.15 E-value=3e-06 Score=89.30 Aligned_cols=189 Identities=13% Similarity=0.050 Sum_probs=97.7
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCccee---eeeeeecc-CCCceEEEEcccccc
Q 003363 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK---LGIKYCYN-RPCALYAVRVSLYKS 347 (826)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~---~g~~~~~~-~~~~l~~~d~~~~~~ 347 (826)
.+.|-++|++++++..+..++.......+.++|||+. ++........-. .|.....+ ....+-.+|.
T Consensus 93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t----~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~----- 163 (441)
T d1qnia2 93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKT----NYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDA----- 163 (441)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBC----CEEEEEECSCEESSCSSSCCCGGGEEEEEEEEET-----
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCE----EEEEeccCCcccccCcccccccccccceEEeecC-----
Confidence 4789999999998876533455556778999999998 655443221100 00000001 1112334554
Q ss_pred hhhhhhhhcCCCCCCcc-eecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeee
Q 003363 348 EASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 426 (826)
Q Consensus 348 ~~~~~~~~~~~~~~~~~-~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 426 (826)
++.+. .++.- .+......|+|||++++..+.... .+..++..+.... +.
T Consensus 164 ------------~t~~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse----------~~~~id~~t~~~~-------d~ 213 (441)
T d1qnia2 164 ------------ETMDVAWQVIV-DGNLDNTDADYTGKYATSTCYNSE----------RAVDLAGTMRNDR-------DW 213 (441)
T ss_dssp ------------TTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTT----------CCSSHHHHTCSSB-------CE
T ss_pred ------------ccceeeEEEec-CCCccceEECCCCCEEEEEecCCC----------ceEEEeccCcceE-------EE
Confidence 34332 23322 235678899999999876665431 1222333332221 11
Q ss_pred eeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEE-CCCCc-EEEecCCCCCeeeEEEeecCCEEEE
Q 003363 427 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN-VSSGE-LLRITPAESNFSWSLLTLDGDNIIA 504 (826)
Q Consensus 427 ~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vd-l~tg~-~~~lt~~~~~~~~~~~s~dg~~l~~ 504 (826)
+.+.+. .....+++||+++++ .+.. +..++ ..+.+ +..|..+.. .....++|||+++++
T Consensus 214 i~v~n~-------------p~~~~~~~dGk~~~v----~~~~-v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~ 274 (441)
T d1qnia2 214 VVVFNV-------------ERIAAAVKAGNFKTI----GDSK-VPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIA 274 (441)
T ss_dssp EEEEEH-------------HHHHHHHHTTCCBCC----TTCC-CCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEE
T ss_pred EEeCCc-------------cceEEEecCCCEEEe----CCCC-cEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEE
Confidence 111111 113356789985543 2222 23333 33333 444444333 344688999997776
Q ss_pred EEeCCCCCCeEEEEeec
Q 003363 505 VSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 505 ~~s~~~~p~~l~~~~~~ 521 (826)
...-. +.+.++++.
T Consensus 275 ~~~~~---~tvsv~d~~ 288 (441)
T d1qnia2 275 NGKLS---PTVSVIAID 288 (441)
T ss_dssp ECTTS---SBEEEEEGG
T ss_pred eCCcC---CcEEEEEee
Confidence 64322 337777754
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.13 E-value=0.0001 Score=73.28 Aligned_cols=155 Identities=15% Similarity=0.119 Sum_probs=88.8
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCcc
Q 003363 158 AVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 237 (826)
Q Consensus 158 ~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~ 237 (826)
..+++|+++.+++....+ ..+.+|+-..............+.+ ..++|||||++|+....+
T Consensus 123 ~~~~~~~~~~~~v~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~v------~~~~~s~~~~~l~~g~~d--------- 183 (287)
T d1pgua2 123 GSAVSLSQNYVAVGLEEG----NTIQVFKLSDLEVSFDLKTPLRAKP------SYISISPSETYIAAGDVM--------- 183 (287)
T ss_dssp EEEEEECSSEEEEEETTT----SCEEEEETTEEEEEEECSSCCSSCE------EEEEECTTSSEEEEEETT---------
T ss_pred eeeeeccCcceeeecccc----ceeeeeeccccceeeeeeeccCCce------eEEEeccCcccccccccc---------
Confidence 346788999988765543 2355663333333333322232333 789999999998876432
Q ss_pred CCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEe
Q 003363 238 LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 317 (826)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~ 317 (826)
..|.+||+.+++.....-......+..++|+|+++. .....
T Consensus 184 -----------------------------------g~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~----~~~~~ 224 (287)
T d1pgua2 184 -----------------------------------GKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG----ANEEE 224 (287)
T ss_dssp -----------------------------------SCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC----------C
T ss_pred -----------------------------------ccccceeecccccccccccccccccceeeecccccc----ccccc
Confidence 468899998887543211233446778999998864 33222
Q ss_pred ecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEec
Q 003363 318 WSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (826)
Q Consensus 318 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~ 391 (826)
....- ...-..+..|+++|+.. .......+..+...+....|+||++ |+..+.
T Consensus 225 ~~~~~-----l~sgs~D~~i~iw~~~~---------------~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~ 277 (287)
T d1pgua2 225 IEEDL-----VATGSLDTNIFIYSVKR---------------PMKIIKALNAHKDGVNNLLWETPST-LVSSGA 277 (287)
T ss_dssp CSCCE-----EEEEETTSCEEEEESSC---------------TTCCEEETTSSTTCEEEEEEEETTE-EEEEET
T ss_pred CCCCe-----eEeecCCCeEEEEECCC---------------CCeEEEEeCCCCCCeEEEEECCCCE-EEEEEC
Confidence 11110 00112345788898731 1223455666777788999999975 554443
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.09 E-value=0.0003 Score=70.78 Aligned_cols=92 Identities=16% Similarity=0.202 Sum_probs=47.7
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003363 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (826)
Q Consensus 103 ~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (826)
.++|||+ |.++ +.. ...||.++ .. ++...+...+ ......+++|||+.+ ++.... +....+
T Consensus 34 Av~pdG~-l~vt-~~~-------~~~I~~i~--p~-g~~~~~~~~~-----~~~~gla~~~dG~l~-v~~~~~-~~~~~~ 94 (302)
T d2p4oa1 34 ASAPDGT-IFVT-NHE-------VGEIVSIT--PD-GNQQIHATVE-----GKVSGLAFTSNGDLV-ATGWNA-DSIPVV 94 (302)
T ss_dssp EECTTSC-EEEE-ETT-------TTEEEEEC--TT-CCEEEEEECS-----SEEEEEEECTTSCEE-EEEECT-TSCEEE
T ss_pred EECCCCC-EEEE-eCC-------CCEEEEEe--CC-CCEEEEEcCC-----CCcceEEEcCCCCeE-EEecCC-ceEEEE
Confidence 4589997 4333 222 23566644 33 3333333333 457788999999843 333222 322233
Q ss_pred EEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCe
Q 003363 183 ELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL 221 (826)
Q Consensus 183 ~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ 221 (826)
... ..+....+....... ...++.+.+||+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~--------~~n~i~~~~~g~~ 126 (302)
T d2p4oa1 95 SLVKSDGTVETLLTLPDAI--------FLNGITPLSDTQY 126 (302)
T ss_dssp EEECTTSCEEEEEECTTCS--------CEEEEEESSSSEE
T ss_pred EecccccceeeccccCCcc--------ccceeEEccCCCE
Confidence 333 344555555543321 1257889999953
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.98 E-value=0.00027 Score=71.81 Aligned_cols=216 Identities=8% Similarity=0.040 Sum_probs=113.4
Q ss_pred ccEEEEeCCCCCeEEEEecC-CCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNP-ENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~-~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
.....+++|||+.++ +... ......++.+. .++............ . ....+.+.|||+ |++.......
T Consensus 83 ~p~gla~~~dG~l~v-a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~------~~nd~~~d~~G~-l~vtd~~~~~- 152 (319)
T d2dg1a1 83 NPAAIKIHKDGRLFV-CYLGDFKSTGGIFAATENGDNLQDIIEDLSTA-Y------CIDDMVFDSKGG-FYFTDFRGYS- 152 (319)
T ss_dssp SEEEEEECTTSCEEE-EECTTSSSCCEEEEECTTSCSCEEEECSSSSC-C------CEEEEEECTTSC-EEEEECCCBT-
T ss_pred CeeEEEECCCCCEEE-EecCCCccceeEEEEcCCCceeeeeccCCCcc-c------CCcceeEEeccc-eeeccccccc-
Confidence 456788999997443 3322 11233466666 344444443321111 0 125688999996 5554221100
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (826)
......++.++.+++.++.+ ...-.....++|+|||+.
T Consensus 153 ------------------------------------~~~~g~v~~~~~dg~~~~~~--~~~~~~pnGia~s~dg~~---- 190 (319)
T d2dg1a1 153 ------------------------------------TNPLGGVYYVSPDFRTVTPI--IQNISVANGIALSTDEKV---- 190 (319)
T ss_dssp ------------------------------------TBCCEEEEEECTTSCCEEEE--EEEESSEEEEEECTTSSE----
T ss_pred ------------------------------------ccCcceeEEEecccceeEEE--eeccceeeeeeeccccce----
Confidence 01236799999888877766 222234567899999997
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceec-------CCCCccccCceecCCCCE
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-------TESISSAFFPRFSPDGKF 385 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-------t~~~~~~~~p~~SpDG~~ 385 (826)
|+++.. ....|++++++. ++...... ..........++.+||+
T Consensus 191 lyvad~--------------~~~~I~~~d~~~---------------~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~- 240 (319)
T d2dg1a1 191 LWVTET--------------TANRLHRIALED---------------DGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN- 240 (319)
T ss_dssp EEEEEG--------------GGTEEEEEEECT---------------TSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-
T ss_pred EEEecc--------------cCCceEEEEEcC---------------CCceeccccceeeeccCCccceeeeeEcCCCC-
Confidence 766541 223788888731 11111111 11112233456777786
Q ss_pred EEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEe-
Q 003363 386 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW- 464 (826)
Q Consensus 386 l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~- 464 (826)
+|++.. +...|.++|.+ |+. +..+..|.... + .+.....++|.+++..++.++..
T Consensus 241 -l~Va~~---------~~g~V~~~~p~-G~~----------l~~i~~P~~~~--~-~~~~~~~~~~~~~~~~~~~t~~~~ 296 (319)
T d2dg1a1 241 -LYVAMY---------GQGRVLVFNKR-GYP----------IGQILIPGRDE--G-HMLRSTHPQFIPGTNQLIICSNDI 296 (319)
T ss_dssp -EEEEEE---------TTTEEEEECTT-SCE----------EEEEECTTGGG--T-CSCBCCEEEECTTSCEEEEEEECG
T ss_pred -EEEEEc---------CCCEEEEECCC-CcE----------EEEEeCCCcCC--C-cCceeeeEEEeCCCCEEEEEcCCC
Confidence 334332 12568888743 221 12222222100 0 11123456788888777776653
Q ss_pred --CCeEEEEEEECC
Q 003363 465 --GSSQVIISVNVS 476 (826)
Q Consensus 465 --~~~~~l~~vdl~ 476 (826)
.+...||+++..
T Consensus 297 ~~~~~g~l~~~~~~ 310 (319)
T d2dg1a1 297 EMGGGSMLYTVNGF 310 (319)
T ss_dssp GGTCCEEEEEEECS
T ss_pred CcCCceeEEEEeCC
Confidence 355678998864
|
| >d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Dog (Canis familiaris) [TaxId: 9615]
Probab=97.97 E-value=3e-06 Score=85.49 Aligned_cols=113 Identities=11% Similarity=0.028 Sum_probs=71.7
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHH-HHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~-~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (826)
+...|++|++||.............. ++|....+.|+++|++..... ....+. ..-....+.+...|++|.+...
T Consensus 67 ~~~~pt~iiiHGw~~~~~~~~~~~~~~a~l~~~d~NVI~VDW~~~a~~--~Y~~a~--~n~~~Vg~~ia~~i~~l~~~~g 142 (337)
T d1rp1a2 67 QTDKKTRFIIHGFIDKGEENWLLDMCKNMFKVEEVNCICVDWKKGSQT--SYTQAA--NNVRVVGAQVAQMLSMLSANYS 142 (337)
T ss_dssp CTTSEEEEEECCCCCTTCTTHHHHHHHHHTTTCCEEEEEEECHHHHSS--CHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEeCCCcCCCCcchHHHHHHHHHhcCCceEEEEeeccccCc--chHHHH--HHHHHHHHHHHHHHHHHHHhcC
Confidence 35679999999976554332233333 355566799999999641110 000000 0001113556667777777666
Q ss_pred CCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCcc
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 706 (826)
++.++|.|+|||+||++|..+.. +...+..++...|.-
T Consensus 143 ~~~~~vhlIGhSLGAhvAG~aG~-~~~~l~rItgLDPA~ 180 (337)
T d1rp1a2 143 YSPSQVQLIGHSLGAHVAGEAGS-RTPGLGRITGLDPVE 180 (337)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHH-TSTTCCEEEEESCCC
T ss_pred CChhheEEEeecHHHhhhHHHHH-hhccccceeccCCCc
Confidence 89999999999999999986554 455677777777654
|
| >d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.95 E-value=1.5e-05 Score=78.31 Aligned_cols=109 Identities=18% Similarity=0.213 Sum_probs=65.0
Q ss_pred CCCCCcEEEEEcCCCCCC-CCccchHHHHHHHHC--CcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHH
Q 003363 588 DCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 664 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~-~~~~~~~~~~~la~~--G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 664 (826)
+..+.| ||++||-..+. ....+......+.+. |+.|+++++..... ....... ...+.+..+.+...++
T Consensus 2 p~~P~P-VVLvHGlg~s~~~~~~m~~l~~~l~~~~pG~~V~~l~~g~~~~--~~~~~~~-----~~~~~~~~e~v~~~I~ 73 (279)
T d1ei9a_ 2 PPAPLP-LVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLR--EDVENSF-----FLNVNSQVTTVCQILA 73 (279)
T ss_dssp TTSSCC-EEEECCTTCCSCCTTTTHHHHHHHHHHSTTCCEEECCCSSSHH--HHHHHHH-----HSCHHHHHHHHHHHHH
T ss_pred cCCCCc-EEEECCCCCCCCChHHHHHHHHHHHHHCCCeEEEEEEcCCCcc--cccccch-----hhhHHHHHHHHHHHHH
Confidence 344566 77899954432 233566666777655 99999999764211 1000000 1124444444433333
Q ss_pred cCCCCCCcEEEEEecchHHHHHHHHHhCCC-ceeEEEecCC
Q 003363 665 MGLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNP 704 (826)
Q Consensus 665 ~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~p 704 (826)
......++|.++|||+||.++-.++.++++ .+...|..++
T Consensus 74 ~~~~~~~~v~lVGhSqGGLiaR~~i~~~~~~~V~~lITLgs 114 (279)
T d1ei9a_ 74 KDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGG 114 (279)
T ss_dssp SCGGGTTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESC
T ss_pred hccccccceeEEEEccccHHHHHHHHHcCCCCcceEEEECC
Confidence 311224689999999999999999998875 4667766654
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.92 E-value=3.6e-05 Score=77.82 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=25.1
Q ss_pred cccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 373 ~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
.+...+|||+|++|+..+.+ ..|++||+.+++.
T Consensus 253 ~v~~l~~sp~~~~lasg~~D-----------g~v~vWD~~~~~~ 285 (342)
T d1yfqa_ 253 PVNSIEFSPRHKFLYTAGSD-----------GIISCWNLQTRKK 285 (342)
T ss_dssp CEEEEEECTTTCCEEEEETT-----------SCEEEEETTTTEE
T ss_pred cceeEEecCCccEEEEECCC-----------CEEEEEECCCCcE
Confidence 45678999999998766654 3589999987554
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=0.0014 Score=65.73 Aligned_cols=180 Identities=11% Similarity=-0.029 Sum_probs=95.6
Q ss_pred CccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccch
Q 003363 269 GKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 348 (826)
Q Consensus 269 ~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 348 (826)
+.....|.++|...++.... .... ......+++|++. |+..+ .+..|+.+|+
T Consensus 153 ~~~d~~i~~~d~~~~~~~~~--~~~~-~~~~~~~~~~~~~----l~s~~---------------~dg~i~~~d~------ 204 (342)
T d2ovrb2 153 GAYDFMVKVWDPETETCLHT--LQGH-TNRVYSLQFDGIH----VVSGS---------------LDTSIRVWDV------ 204 (342)
T ss_dssp EETTSCEEEEEGGGTEEEEE--ECCC-SSCEEEEEECSSE----EEEEE---------------TTSCEEEEET------
T ss_pred ecCCCeEEEeecccceeeEE--EcCc-ccccccccCCCCE----EEEEe---------------CCCeEEEeec------
Confidence 33457788999887765433 1221 2345678889887 76655 3347888887
Q ss_pred hhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeee
Q 003363 349 ASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 427 (826)
Q Consensus 349 ~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 427 (826)
..++ ...+..+...+. .+++++++|+..+.+ ..|++||....+.......
T Consensus 205 -----------~~~~~~~~~~~~~~~v~--~~~~~~~~l~s~s~d-----------~~i~iwd~~~~~~~~~~~~----- 255 (342)
T d2ovrb2 205 -----------ETGNCIHTLTGHQSLTS--GMELKDNILVSGNAD-----------STVKIWDIKTGQCLQTLQG----- 255 (342)
T ss_dssp -----------TTCCEEEEECCCCSCEE--EEEEETTEEEEEETT-----------SCEEEEETTTCCEEEEECS-----
T ss_pred -----------ccceeeeEeccccccee--EEecCCCEEEEEcCC-----------CEEEEEecccccccccccc-----
Confidence 3333 344444444443 455667777665543 4588898876543211000
Q ss_pred eeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEE-ecCC-----CCCeeeEEEeecCCE
Q 003363 428 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR-ITPA-----ESNFSWSLLTLDGDN 501 (826)
Q Consensus 428 ~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~-lt~~-----~~~~~~~~~s~dg~~ 501 (826)
.. .......+++.+++.+ +++..++ .|..+|+.+|+..+ +... ...+....+++++..
T Consensus 256 -----~~--------~~~~~~~~~~~~~~~~-~s~s~Dg--~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~ 319 (342)
T d2ovrb2 256 -----PN--------KHQSAVTCLQFNKNFV-ITSSDDG--TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV 319 (342)
T ss_dssp -----TT--------SCSSCEEEEEECSSEE-EEEETTS--EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEE
T ss_pred -----cc--------eeeeceeecccCCCee-EEEcCCC--EEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCE
Confidence 00 0011122344566644 4444444 46666888887643 3221 112444566776543
Q ss_pred EEEEEeCCCCCCeEEEEeec
Q 003363 502 IIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 502 l~~~~s~~~~p~~l~~~~~~ 521 (826)
++....+.+.-.+|++.|+.
T Consensus 320 la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 320 CAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp EEEECSSSSSCCEEEEEECC
T ss_pred EEEEeCCCCCeeEEEEEeCC
Confidence 33333333445567776653
|
| >d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.85 E-value=9.5e-06 Score=81.52 Aligned_cols=114 Identities=11% Similarity=-0.005 Sum_probs=73.5
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHH-HHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~-~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (826)
+...|++|++||............... +|....+.|+++|+...... ....+.. + -...-+.+...|++|.....
T Consensus 67 ~~~~pt~iiiHG~~~~~~~~~~~~~~~a~l~~~d~NVi~VDW~~~a~~--~Y~~a~~-n-~~~Vg~~ia~~i~~l~~~~g 142 (338)
T d1bu8a2 67 QLDRKTRFIVHGFIDKGEDGWLLDMCKKMFQVEKVNCICVDWRRGSRT--EYTQASY-N-TRVVGAEIAFLVQVLSTEMG 142 (338)
T ss_dssp CTTSEEEEEECCSCCTTCTTHHHHHHHHHHTTCCEEEEEEECHHHHSS--CHHHHHH-H-HHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCceEEEeCcccCCCCcccHHHHHHHHHhcCCceEEEEechhhccc--chHHHHH-h-HHHHHHHHHHHHHHHHHhcC
Confidence 456899999999655443333333333 55566699999998642110 0000000 0 00112345556667666656
Q ss_pred CCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCcc
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 706 (826)
++.++|.|+|||+||++|..+..+.+.++..++...|..
T Consensus 143 ~~~~~vhlIGhSLGAhiaG~ag~~l~~kigrItgLDPA~ 181 (338)
T d1bu8a2 143 YSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE 181 (338)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCcceeEEEeccHHHHHHHHHHHhhccccccccccccCc
Confidence 889999999999999999998887777788888777653
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.80 E-value=0.0014 Score=66.10 Aligned_cols=220 Identities=8% Similarity=0.060 Sum_probs=111.1
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~ 235 (826)
....+++|||+.|++... ...+..+..++....+.... ..|.-+ .....+.+.|||+ |++.........
T Consensus 73 P~Gl~~~~dg~~l~vad~----~~~i~~~~~~g~~~~~~~~~--~~g~~~--~~pndl~~d~~G~-lyvtd~~~~~~~-- 141 (314)
T d1pjxa_ 73 PAGCQCDRDANQLFVADM----RLGLLVVQTDGTFEEIAKKD--SEGRRM--QGCNDCAFDYEGN-LWITAPAGEVAP-- 141 (314)
T ss_dssp EEEEEECSSSSEEEEEET----TTEEEEEETTSCEEECCSBC--TTSCBC--BCCCEEEECTTSC-EEEEECBCBCTT--
T ss_pred ceeEEEeCCCCEEEEEEC----CCeEEEEeCCCcEEEEEecc--cccccc--CCCcEEEECCCCC-EEEecCccCccc--
Confidence 456889999998765432 23467776544433332211 101000 0014688999995 655422111000
Q ss_pred ccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEE
Q 003363 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 315 (826)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf 315 (826)
+. ...........||.++.++. ...+ ...-.....++|+||++... ..+|
T Consensus 142 ~~--------------------------~~~~~~~~~G~v~~~~~dg~-~~~~--~~~~~~pNGi~~~~d~d~~~-~~ly 191 (314)
T d1pjxa_ 142 AD--------------------------YTRSMQEKFGSIYCFTTDGQ-MIQV--DTAFQFPNGIAVRHMNDGRP-YQLI 191 (314)
T ss_dssp SC--------------------------CCBTTSSSCEEEEEECTTSC-EEEE--EEEESSEEEEEEEECTTSCE-EEEE
T ss_pred cc--------------------------ccceeccCCceEEEEeecCc-eeEe--eCCcceeeeeEECCCCCcce-eEEE
Confidence 00 00000113467899987654 4444 12222345689999886311 1344
Q ss_pred EeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc--e----ecCCC-CccccCceecCCCCEEEE
Q 003363 316 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--V----NLTES-ISSAFFPRFSPDGKFLVF 388 (826)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~----~Lt~~-~~~~~~p~~SpDG~~l~f 388 (826)
++.. ....||++|+. ..+.. + .+... .......++.+||+ | |
T Consensus 192 v~d~-------------~~~~i~~~d~~----------------~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-l-y 240 (314)
T d1pjxa_ 192 VAET-------------PTKKLWSYDIK----------------GPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-L-L 240 (314)
T ss_dssp EEET-------------TTTEEEEEEEE----------------ETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-E-E
T ss_pred EEee-------------cccceEEeecc----------------CccccceeeEEEEccccccccceeeEEecCCc-E-E
Confidence 4422 23378888873 12221 1 11111 12234567788887 3 4
Q ss_pred EeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeE
Q 003363 389 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 468 (826)
Q Consensus 389 ~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~ 468 (826)
++.. +..+|+++|.+++..... +..+. .....++|.+|+++||++.. ...
T Consensus 241 Va~~---------~~g~I~~~dp~~g~~~~~----------i~~p~---------~~~t~~afg~d~~~lyVt~~--~~g 290 (314)
T d1pjxa_ 241 VANW---------GSSHIEVFGPDGGQPKMR----------IRCPF---------EKPSNLHFKPQTKTIFVTEH--ENN 290 (314)
T ss_dssp EEEE---------TTTEEEEECTTCBSCSEE----------EECSS---------SCEEEEEECTTSSEEEEEET--TTT
T ss_pred EEEc---------CCCEEEEEeCCCCEEEEE----------EECCC---------CCEEEEEEeCCCCEEEEEEC--CCC
Confidence 4432 236799998776543211 01110 12236789999999988753 344
Q ss_pred EEEEEECCC
Q 003363 469 VIISVNVSS 477 (826)
Q Consensus 469 ~l~~vdl~t 477 (826)
.||++++..
T Consensus 291 ~i~~~~~~~ 299 (314)
T d1pjxa_ 291 AVWKFEWQR 299 (314)
T ss_dssp EEEEEECSS
T ss_pred cEEEEECCC
Confidence 788888643
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=0.0064 Score=59.24 Aligned_cols=182 Identities=8% Similarity=-0.033 Sum_probs=107.1
Q ss_pred ceEEEEEccCC----ceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccch
Q 003363 273 PSLFVININSG----EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 348 (826)
Q Consensus 273 ~~l~v~d~~~g----~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 348 (826)
..|+..++++. ..+.+. ......+..++.-+-++. |+++.. ....|.++++
T Consensus 52 ~~I~~~~l~~~~~~~~~~~~~-~~~~~~p~glAvD~~~~~----lY~~d~--------------~~~~I~v~~~------ 106 (266)
T d1ijqa1 52 RMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIHSN----IYWTDS--------------VLGTVSVADT------ 106 (266)
T ss_dssp TEEEEEEC--------CEEEE-CSSCSCCCEEEEETTTTE----EEEEET--------------TTTEEEEEET------
T ss_pred CEEEEEEecCCCCCcceEEEE-eCCCCCcceEEEeeccce----EEEEec--------------CCCEEEeEec------
Confidence 56777776542 222221 222334567888888887 877641 2236888988
Q ss_pred hhhhhhhcCCCCCCcceec-CCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeee
Q 003363 349 ASELELKESSSEDLPVVNL-TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 427 (826)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~L-t~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 427 (826)
++...+.+ .............|...+|+|..... ...|++.++++...+.+....
T Consensus 107 -----------~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~---------~~~I~r~~~dGs~~~~l~~~~---- 162 (266)
T d1ijqa1 107 -----------KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT---------PAKIKKGGLNGVDIYSLVTEN---- 162 (266)
T ss_dssp -----------TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS---------SCEEEEEETTSCCEEEEECSS----
T ss_pred -----------CCceEEEEEcCCCCCcceEEEEcccCeEEEeccCC---------CcceeEeccCCCceecccccc----
Confidence 55544443 33344456677888878888775322 257999998775442221100
Q ss_pred eeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCe-eeEEEeecCCEEEEEE
Q 003363 428 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNF-SWSLLTLDGDNIIAVS 506 (826)
Q Consensus 428 ~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~-~~~~~s~dg~~l~~~~ 506 (826)
-. ....+++.+.++.||++- .....|..+|++++..+.+....... .-..++.+++.|++.-
T Consensus 163 --------~~-------~p~gl~iD~~~~~lYw~d--~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td 225 (266)
T d1ijqa1 163 --------IQ-------WPNGITLDLLSGRLYWVD--SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 225 (266)
T ss_dssp --------CS-------CEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEE
T ss_pred --------cc-------eeeEEEeeccccEEEEec--CCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEE
Confidence 00 123566777888898863 44558999999887766664443321 2235777888888765
Q ss_pred eCCCCCCeEEEEeeccc
Q 003363 507 SSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 507 s~~~~p~~l~~~~~~~~ 523 (826)
.. ...|+.++..++
T Consensus 226 ~~---~~~I~~~~~~~g 239 (266)
T d1ijqa1 226 II---NEAIFSANRLTG 239 (266)
T ss_dssp TT---TTEEEEEETTTC
T ss_pred CC---CCeEEEEECCCC
Confidence 33 346888775443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.65 E-value=0.003 Score=61.54 Aligned_cols=179 Identities=8% Similarity=-0.032 Sum_probs=109.4
Q ss_pred CceEEEEEccCCceEeccCCCCC-CccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 272 QPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
...|++.+++++..+.+ .... ..+..++...-++. |+++.. ....|.++++
T Consensus 57 ~~~I~~~~l~g~~~~~v--~~~~~~~p~~iAvD~~~~~----lY~~d~--------------~~~~I~~~~~-------- 108 (263)
T d1npea_ 57 EPSIGRASLHGGEPTTI--IRQDLGSPEGIALDHLGRT----IFWTDS--------------QLDRIEVAKM-------- 108 (263)
T ss_dssp TTEEEEEESSSCCCEEE--ECTTCCCEEEEEEETTTTE----EEEEET--------------TTTEEEEEET--------
T ss_pred CCeEEEEEcccCCcEEE--EEeccccccEEEEeccCCe----EEEecc--------------CCCEEEEEec--------
Confidence 36799999988877666 2222 34566777666776 777641 2337888887
Q ss_pred hhhhhcCCCCCCcceecCC-CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeee
Q 003363 351 ELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 429 (826)
++...+.|.. ........+..|.+.+|+|..... ....|++.++++.....+....
T Consensus 109 ---------dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~--------~~~~I~r~~~dG~~~~~i~~~~------ 165 (263)
T d1npea_ 109 ---------DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR--------DNPKIETSHMDGTNRRILAQDN------ 165 (263)
T ss_dssp ---------TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS--------SSCEEEEEETTSCCCEEEECTT------
T ss_pred ---------CCceEEEEecccccCCcEEEEecccCcEEEeecCC--------CCcEEEEecCCCCCceeeeeec------
Confidence 4444444433 334456777889888888876432 2346999998875543221100
Q ss_pred eeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCC
Q 003363 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSP 509 (826)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~ 509 (826)
-. .+..+++.+.++.||++. .+...|.++|++++..+.+...... -..++.++++||++-...
T Consensus 166 ------~~-------~P~glaiD~~~~~lYw~d--~~~~~I~~~~~~g~~~~~v~~~~~~--P~~lav~~~~lYwtd~~~ 228 (263)
T d1npea_ 166 ------LG-------LPNGLTFDAFSSQLCWVD--AGTHRAECLNPAQPGRRKVLEGLQY--PFAVTSYGKNLYYTDWKT 228 (263)
T ss_dssp ------CS-------CEEEEEEETTTTEEEEEE--TTTTEEEEEETTEEEEEEEEECCCS--EEEEEEETTEEEEEETTT
T ss_pred ------cc-------ccceEEEeecCcEEEEEe--CCCCEEEEEECCCCCeEEEECCCCC--cEEEEEECCEEEEEECCC
Confidence 00 112456667778888863 4456789999987777666544321 124566778777766433
Q ss_pred CCCCeEEEEeec
Q 003363 510 VDVPQVKYGYFV 521 (826)
Q Consensus 510 ~~p~~l~~~~~~ 521 (826)
. .|+.++..
T Consensus 229 ~---~I~~~~~~ 237 (263)
T d1npea_ 229 N---SVIAMDLA 237 (263)
T ss_dssp T---EEEEEETT
T ss_pred C---EEEEEECC
Confidence 3 47777654
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=0.0017 Score=64.91 Aligned_cols=98 Identities=11% Similarity=0.023 Sum_probs=59.8
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
..|.+||+...+..............-.+++++++. ++..+ .+..|.++|+
T Consensus 237 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~s~s---------------~Dg~i~iwd~---------- 287 (342)
T d2ovrb2 237 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF----VITSS---------------DDGTVKLWDL---------- 287 (342)
T ss_dssp SCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSE----EEEEE---------------TTSEEEEEET----------
T ss_pred CEEEEEecccccccccccccceeeeceeecccCCCe----eEEEc---------------CCCEEEEEEC----------
Confidence 568999998776544311111222233456667775 66555 2347889998
Q ss_pred hhhcCCCCCCcc-eecC-----CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 353 ELKESSSEDLPV-VNLT-----ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 353 ~~~~~~~~~~~~-~~Lt-----~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
.+++. +.+. .+...+...+|||||..|+..+.+. .....|++||++.
T Consensus 288 -------~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dG-------t~~~~l~~~Df~~ 340 (342)
T d2ovrb2 288 -------KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG-------TEETKLLVLDFDV 340 (342)
T ss_dssp -------TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS-------SSCCEEEEEECCC
T ss_pred -------CCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCC-------CCeeEEEEEeCCC
Confidence 55543 3332 1233477889999998777666543 2235799999864
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.54 E-value=0.016 Score=56.22 Aligned_cols=204 Identities=9% Similarity=0.093 Sum_probs=119.7
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecC-CCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
+....+-+..++|.+.... ...++.+. +++..+.+.... ..+ .+++...-++.|++.-.
T Consensus 38 ~~~ld~D~~~~~iywsd~~---~~~I~~~~l~g~~~~~v~~~~~~~p----------~~iAvD~~~~~lY~~d~------ 98 (263)
T d1npea_ 38 IIGLAFDCVDKVVYWTDIS---EPSIGRASLHGGEPTTIIRQDLGSP----------EGIALDHLGRTIFWTDS------ 98 (263)
T ss_dssp EEEEEEETTTTEEEEEETT---TTEEEEEESSSCCCEEEECTTCCCE----------EEEEEETTTTEEEEEET------
T ss_pred EEEEEEEeCCCEEEEEECC---CCeEEEEEcccCCcEEEEEeccccc----------cEEEEeccCCeEEEecc------
Confidence 4456677788888665432 23466666 444444443221 122 46677666777777522
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCC-CccceEEEeeCCCCCccE
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg~~~~~~ 312 (826)
....|.++++++...+.+ .... ..+..++..|....
T Consensus 99 -------------------------------------~~~~I~~~~~dg~~~~~l--~~~~l~~p~~l~vdp~~g~---- 135 (263)
T d1npea_ 99 -------------------------------------QLDRIEVAKMDGTQRRVL--FDTGLVNPRGIVTDPVRGN---- 135 (263)
T ss_dssp -------------------------------------TTTEEEEEETTSCSCEEE--ECSSCSSEEEEEEETTTTE----
T ss_pred -------------------------------------CCCEEEEEecCCceEEEE--ecccccCCcEEEEecccCc----
Confidence 235799999988776655 2222 35677888888776
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecC-CCCccccCceecCCCCEEEEEec
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSA 391 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~l~f~s~ 391 (826)
|+++.+.. ....|+++++ ++...+.+. .........++.+++++|+|...
T Consensus 136 ly~t~~~~------------~~~~I~r~~~-----------------dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~ 186 (263)
T d1npea_ 136 LYWTDWNR------------DNPKIETSHM-----------------DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA 186 (263)
T ss_dssp EEEEECCS------------SSCEEEEEET-----------------TSCCCEEEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred EEEeecCC------------CCcEEEEecC-----------------CCCCceeeeeecccccceEEEeecCcEEEEEeC
Confidence 76665321 1125999998 444444443 33344456778889999988864
Q ss_pred cCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003363 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (826)
Q Consensus 392 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (826)
. ...|.+.|+++...+.+ ..-. .. +..+ +-++.+||++. .+...|+
T Consensus 187 ~----------~~~I~~~~~~g~~~~~v-------~~~~------~~-------P~~l--av~~~~lYwtd--~~~~~I~ 232 (263)
T d1npea_ 187 G----------THRAECLNPAQPGRRKV-------LEGL------QY-------PFAV--TSYGKNLYYTD--WKTNSVI 232 (263)
T ss_dssp T----------TTEEEEEETTEEEEEEE-------EECC------CS-------EEEE--EEETTEEEEEE--TTTTEEE
T ss_pred C----------CCEEEEEECCCCCeEEE-------ECCC------CC-------cEEE--EEECCEEEEEE--CCCCEEE
Confidence 3 25788998876433211 1100 00 0122 23456787763 2345699
Q ss_pred EEECCCCcEEEec
Q 003363 472 SVNVSSGELLRIT 484 (826)
Q Consensus 472 ~vdl~tg~~~~lt 484 (826)
++|..+|+...+.
T Consensus 233 ~~~~~~g~~~~~~ 245 (263)
T d1npea_ 233 AMDLAISKEMDTF 245 (263)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEECCCCccceEE
Confidence 9999888766544
|
| >d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]
Probab=97.47 E-value=0.00062 Score=73.20 Aligned_cols=132 Identities=17% Similarity=0.173 Sum_probs=74.4
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCC--------------------cEEEEECCC
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG--------------------YSLLIVNYR 630 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G--------------------~~Vl~~d~r 630 (826)
+.+..+.-|++...........|+||++-|||+++.. ...|.+.| ..+|.+|.+
T Consensus 46 ~~~~~~ffw~fe~~~~~~~~~~Pl~lWlnGGPGcSS~------~g~f~E~GP~~v~~~~~l~~Np~SWn~~an~lfIDqP 119 (483)
T d1ac5a_ 46 SSDLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSM------DGALVESGPFRVNSDGKLYLNEGSWISKGDLLFIDQP 119 (483)
T ss_dssp CCCCEEEEEEEECSCSGGGSSCCEEEEECCTTTBCTH------HHHHHSSSSEEECTTSCEEECTTCGGGTSEEEEECCS
T ss_pred CCcceEEEEEEEecCCCCCCCCCEEEEECCCCcHHHH------HHHHHccCCeEECCCCceeeCCCcccccCCEEEEeCC
Confidence 3345676677755432223446999999999987531 12222222 568888866
Q ss_pred CCCCCchhhhhc----CCCCCCcc---hHHHHHHHHHH-HHHcCCCCCCcEEEEEecchHHHHHHHHHhC----------
Q 003363 631 GSLGFGEEALQS----LPGKVGSQ---DVNDVLTAIDH-VIDMGLANPSKVTVVGGSHGGFLTTHLIGQA---------- 692 (826)
Q Consensus 631 G~~g~G~~~~~~----~~~~~~~~---~~~D~~~~i~~-l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~---------- 692 (826)
-..||....... ........ ...++..+++. +...+..-..++.|.|.||||..+-.+|..-
T Consensus 120 vGvGfSy~~~~~~~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yI~GESYgG~YvP~la~~i~~~n~~~~~~ 199 (483)
T d1ac5a_ 120 TGTGFSVEQNKDEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKID 199 (483)
T ss_dssp TTSTTCSSCCSSGGGSCTTSSCCSHHHHHHHHHHHHHHHHHHCTTGGGSEEEEEEEETHHHHHHHHHHHHHHHHHHCCST
T ss_pred CCcCeeecCCCCccccccccccCCHHHHHHHHHHHHHHHHHhCcccccCCeEEeecccccchHHHHHHHHHHhccccccC
Confidence 444454321100 00011111 13344444433 3333444457899999999998887666431
Q ss_pred --CCceeEEEecCCccch
Q 003363 693 --PDKFVAAAARNPLCNL 708 (826)
Q Consensus 693 --p~~~~a~v~~~p~~~~ 708 (826)
+-.++++++.+|+++.
T Consensus 200 ~~~inLkGi~IGNg~~d~ 217 (483)
T d1ac5a_ 200 GDTYDLKALLIGNGWIDP 217 (483)
T ss_dssp TSCCEEEEEEEEEECCCH
T ss_pred CCcccceeeeecCCccCh
Confidence 1248898888887664
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.39 E-value=0.011 Score=57.36 Aligned_cols=165 Identities=9% Similarity=0.093 Sum_probs=99.5
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCc--eeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQ--LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~--~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~ 230 (826)
..+....+.+.+++|+++... ...++... ++.. ....+-...+.. ...+++.-+-++.|++.-.
T Consensus 30 ~~~~~id~d~~~~~lYw~D~~---~~~I~~~~l~~~~~~~~~~~~~~~~~~-------~p~glAvD~~~~~lY~~d~--- 96 (266)
T d1ijqa1 30 RNVVALDTEVASNRIYWSDLS---QRMICSTQLDRAHGVSSYDTVISRDIQ-------APDGLAVDWIHSNIYWTDS--- 96 (266)
T ss_dssp SSEEEEEEETTTTEEEEEETT---TTEEEEEEC--------CEEEECSSCS-------CCCEEEEETTTTEEEEEET---
T ss_pred CceEEEEEEeCCCEEEEEECC---CCEEEEEEecCCCCCcceEEEEeCCCC-------CcceEEEeeccceEEEEec---
Confidence 346677888889999776432 23455554 2211 111111112210 0146788788888877522
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003363 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
....|.++++++...+.+. ......+..++..|....
T Consensus 97 ----------------------------------------~~~~I~v~~~~g~~~~~~~-~~~~~~P~~l~vd~~~g~-- 133 (266)
T d1ijqa1 97 ----------------------------------------VLGTVSVADTKGVKRKTLF-RENGSKPRAIVVDPVHGF-- 133 (266)
T ss_dssp ----------------------------------------TTTEEEEEETTSSSEEEEE-ECTTCCEEEEEEETTTTE--
T ss_pred ----------------------------------------CCCEEEeEecCCceEEEEE-cCCCCCcceEEEEcccCe--
Confidence 2357999999887766552 222335667888887665
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCC-CCccccCceecCCCCEEEEE
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFL 389 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~l~f~ 389 (826)
|+++.+. ....|+++++ ++...+.+.. ........++.+++++|+|.
T Consensus 134 --ly~~~~~-------------~~~~I~r~~~-----------------dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~ 181 (266)
T d1ijqa1 134 --MYWTDWG-------------TPAKIKKGGL-----------------NGVDIYSLVTENIQWPNGITLDLLSGRLYWV 181 (266)
T ss_dssp --EEEEECS-------------SSCEEEEEET-----------------TSCCEEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred --EEEeccC-------------CCcceeEecc-----------------CCCceecccccccceeeEEEeeccccEEEEe
Confidence 6665421 2236999998 5555555543 33455678899999999998
Q ss_pred eccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 390 SAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 390 s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
... ...|..+|+++...
T Consensus 182 d~~----------~~~I~~~~~dG~~~ 198 (266)
T d1ijqa1 182 DSK----------LHSISSIDVNGGNR 198 (266)
T ss_dssp ETT----------TTEEEEEETTSCSC
T ss_pred cCC----------cCEEEEEECCCCCE
Confidence 644 25799999977543
|
| >d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.28 E-value=0.003 Score=66.44 Aligned_cols=126 Identities=19% Similarity=0.253 Sum_probs=76.9
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCC--------------------cEEEEECCCCC
Q 003363 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG--------------------YSLLIVNYRGS 632 (826)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G--------------------~~Vl~~d~rG~ 632 (826)
+..+..|++...+ ...+.|+||++-|||+++.. + ..|.+.| ..++-+|.+-.
T Consensus 27 ~~~lfyw~~~s~~--~~~~~Pl~~WlnGGPG~SS~--~----g~~~e~GP~~i~~~~~~~~N~~sW~~~anllfiD~PvG 98 (421)
T d1wpxa1 27 DKHFFFWTFESRN--DPAKDPVILWLNGGPGCSSL--T----GLFFELGPSSIGPDLKPIGNPYSWNSNATVIFLDQPVN 98 (421)
T ss_dssp CCEEEEEEECCSS--CTTTSCEEEEECCTTTBCTH--H----HHHHTTSSEEECTTSCEEECTTCGGGSSEEEEECCSTT
T ss_pred CceEEEEEEEeCC--CCCCCCEEEEECCCCcHHHH--H----HHHHhcCCcEECCCCccccCCcccccccCEEEEecCCC
Confidence 3468888876543 34567999999999987532 1 2222222 57888895544
Q ss_pred CCCchhhhhcCCCCCCcchHHHHHHHHHHHHHc-CCC--CCCcEEEEEecchHHHHHHHHHh---CC---CceeEEEecC
Q 003363 633 LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM-GLA--NPSKVTVVGGSHGGFLTTHLIGQ---AP---DKFVAAAARN 703 (826)
Q Consensus 633 ~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~--d~~rv~l~G~S~GG~~a~~~a~~---~p---~~~~a~v~~~ 703 (826)
.|+........ ..-....+|+.++++...+. +.. ...++.|.|.|+||..+-.+|.+ .. -.++++++.+
T Consensus 99 tGfSy~~~~~~--~~~~~~a~d~~~fl~~f~~~fp~~~~k~~~~yi~GESYgG~yvP~la~~i~~~~~~~inlkGi~iGn 176 (421)
T d1wpxa1 99 VGFSYSGSSGV--SNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRNFNLTSVLIGN 176 (421)
T ss_dssp STTCBCSSCCC--CSHHHHHHHHHHHHHHHHHHCTHHHHTCCCEEEEEETTHHHHHHHHHHHHHHCSSCSSCCCEEEEES
T ss_pred CCceecCCccc--cchHHHHHHHHHHHHHHHHhChhhhccCCCcEEeeecccccccHHHHHHHHHccCCCcceeeeEecC
Confidence 45554321111 11112245666666554443 222 23579999999999988777642 22 2478999999
Q ss_pred Cccch
Q 003363 704 PLCNL 708 (826)
Q Consensus 704 p~~~~ 708 (826)
|+.+.
T Consensus 177 g~~dp 181 (421)
T d1wpxa1 177 GLTDP 181 (421)
T ss_dssp CCCCH
T ss_pred Ccccc
Confidence 98775
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.18 E-value=0.038 Score=53.21 Aligned_cols=79 Identities=5% Similarity=0.023 Sum_probs=42.7
Q ss_pred cccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccc
Q 003363 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 452 (826)
Q Consensus 373 ~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws 452 (826)
......++|+|+ |++.... ...|+++|.++.....+... .+ .....+++.
T Consensus 141 ~p~~i~~~~~g~-~~v~~~~----------~~~i~~~d~~~~~~~~~~~~--------------~~-----~~p~gi~~d 190 (260)
T d1rwia_ 141 DPDGVAVDNSGN-VYVTDTD----------NNRVVKLEAESNNQVVLPFT--------------DI-----TAPWGIAVD 190 (260)
T ss_dssp SCCEEEECTTCC-EEEEEGG----------GTEEEEECTTTCCEEECCCS--------------SC-----CSEEEEEEC
T ss_pred CcceeeecCCCC-Eeeeccc----------cccccccccccceeeeeecc--------------cc-----CCCccceee
Confidence 345678889998 4333322 35788998766443211100 00 012345677
Q ss_pred cCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003363 453 SDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (826)
Q Consensus 453 ~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt 484 (826)
++|+ ||++. .....|++++.+++....+.
T Consensus 191 ~~g~-l~vsd--~~~~~i~~~~~~~~~~~~~~ 219 (260)
T d1rwia_ 191 EAGT-VYVTE--HNTNQVVKLLAGSTTSTVLP 219 (260)
T ss_dssp TTCC-EEEEE--TTTTEEEEECTTCSCCEECC
T ss_pred eeee-eeeee--cCCCEEEEEeCCCCeEEEEc
Confidence 8886 65542 33446777877665544443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.11 E-value=0.005 Score=61.16 Aligned_cols=153 Identities=11% Similarity=0.068 Sum_probs=93.5
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (826)
+++.|.+++..|+|+-- ....|+.+|+++++.+...
T Consensus 21 Egp~wd~~~~~l~wvDi-------------------------------------------~~~~I~r~d~~~g~~~~~~- 56 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNI-------------------------------------------LERELHELHLASGRKTVHA- 56 (295)
T ss_dssp EEEEEETTTTEEEEEEG-------------------------------------------GGTEEEEEETTTTEEEEEE-
T ss_pred eCCeEECCCCEEEEEEC-------------------------------------------CCCEEEEEECCCCeEEEEE-
Confidence 58999999888988722 2367999999999887652
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC
Q 003363 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 370 (826)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 370 (826)
....++.+++.+||+ |++... ..|+++|. .+++.+.+...
T Consensus 57 --~~~~~~~i~~~~dg~-----l~va~~----------------~gl~~~d~-----------------~tg~~~~l~~~ 96 (295)
T d2ghsa1 57 --LPFMGSALAKISDSK-----QLIASD----------------DGLFLRDT-----------------ATGVLTLHAEL 96 (295)
T ss_dssp --CSSCEEEEEEEETTE-----EEEEET----------------TEEEEEET-----------------TTCCEEEEECS
T ss_pred --CCCCcEEEEEecCCC-----EEEEEe----------------CccEEeec-----------------ccceeeEEeee
Confidence 223466788889987 555441 15889997 77777666432
Q ss_pred C-----ccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCC
Q 003363 371 I-----SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 445 (826)
Q Consensus 371 ~-----~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~ 445 (826)
. .......+.|+|+ |+|.+...... .....+|+++ .++.+.+... . . .
T Consensus 97 ~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~----~~~g~l~~~~--~g~~~~~~~~-------~------~-------~ 149 (295)
T d2ghsa1 97 ESDLPGNRSNDGRMHPSGA-LWIGTMGRKAE----TGAGSIYHVA--KGKVTKLFAD-------I------S-------I 149 (295)
T ss_dssp STTCTTEEEEEEEECTTSC-EEEEEEETTCC----TTCEEEEEEE--TTEEEEEEEE-------E------S-------S
T ss_pred ecCCCcccceeeEECCCCC-EEEEecccccc----ccceeEeeec--CCcEEEEeec-------c------C-------C
Confidence 1 1245567889997 55555443211 1234555553 3332111100 0 0 1
Q ss_pred CCCCccccCCCEEEEEEEeCCeEEEEEEECC
Q 003363 446 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 476 (826)
Q Consensus 446 ~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~ 476 (826)
...+.|++|++.+|++... ...||+++++
T Consensus 150 ~Ng~~~s~d~~~l~~~dt~--~~~I~~~~~d 178 (295)
T d2ghsa1 150 PNSICFSPDGTTGYFVDTK--VNRLMRVPLD 178 (295)
T ss_dssp EEEEEECTTSCEEEEEETT--TCEEEEEEBC
T ss_pred cceeeecCCCceEEEeecc--cceeeEeeec
Confidence 2367899999998887543 4456666553
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.94 E-value=0.015 Score=56.15 Aligned_cols=93 Identities=11% Similarity=-0.053 Sum_probs=52.8
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
.+..|.+||+.+++..... ......+. .+++++.. |+... .+..|.++|+
T Consensus 156 ~d~~i~~~d~~~~~~~~~~-~~~~~~v~--~~~~~~~~----l~~~~---------------~dg~i~i~d~-------- 205 (293)
T d1p22a2 156 GDRTIKVWNTSTCEFVRTL-NGHKRGIA--CLQYRDRL----VVSGS---------------SDNTIRLWDI-------- 205 (293)
T ss_dssp TTSEEEEEETTTCCEEEEE-ECCSSCEE--EEEEETTE----EEEEE---------------TTSCEEEEET--------
T ss_pred CCCceeeecCCCCcEEEEE-cccccccc--cccCCCCe----EEEec---------------CCCEEEEEec--------
Confidence 4578999999888754331 11122222 34555665 65554 2346888887
Q ss_pred hhhhhcCCCCCCccee-cCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 351 ELELKESSSEDLPVVN-LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~-Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
.+..... .......+ -.+++++++|+..+.+ ..|++||+.++.
T Consensus 206 ---------~~~~~~~~~~~~~~~v--~~~~~~~~~l~sg~~d-----------g~i~iwd~~~~~ 249 (293)
T d1p22a2 206 ---------ECGACLRVLEGHEELV--RCIRFDNKRIVSGAYD-----------GKIKVWDLVAAL 249 (293)
T ss_dssp ---------TTCCEEEEECCCSSCE--EEEECCSSEEEEEETT-----------SCEEEEEHHHHT
T ss_pred ---------ccceeeeeecccceee--eeccccceEEEEEcCC-----------CEEEEEECCCCc
Confidence 4443332 22222222 3578899988766544 358888876543
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.90 E-value=0.084 Score=50.37 Aligned_cols=62 Identities=15% Similarity=0.144 Sum_probs=32.5
Q ss_pred ccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 003363 452 LSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 452 s~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 521 (826)
++++..++ +...++. |..+|+.+++.......... ....++.++..++....+ . .|.+.++.
T Consensus 185 ~~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~l~sg~~d-g---~i~iwd~~ 246 (293)
T d1p22a2 185 QYRDRLVV-SGSSDNT--IRLWDIECGACLRVLEGHEE-LVRCIRFDNKRIVSGAYD-G---KIKVWDLV 246 (293)
T ss_dssp EEETTEEE-EEETTSC--EEEEETTTCCEEEEECCCSS-CEEEEECCSSEEEEEETT-S---CEEEEEHH
T ss_pred cCCCCeEE-EecCCCE--EEEEecccceeeeeecccce-eeeeccccceEEEEEcCC-C---EEEEEECC
Confidence 44555553 4444444 55568888777665544432 223566677655544332 2 35665654
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.84 E-value=0.15 Score=45.64 Aligned_cols=167 Identities=17% Similarity=0.163 Sum_probs=99.6
Q ss_pred cCceEEEEEcc-CCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchh
Q 003363 271 RQPSLFVININ-SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 349 (826)
Q Consensus 271 ~~~~l~v~d~~-~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 349 (826)
....||..++. -|+..++. .+.. +.-++-.-|++. ++|++...+ ...||.++
T Consensus 80 E~Hai~~~Nlk~~GEE~~i~-spk~--vRI~S~~yddk~----vvF~Gased------------~~~LYvie-------- 132 (313)
T d2hu7a1 80 EQHALFKVNTSRPGEEQRLE-AVKP--MRILSGVDTGEA----VVFTGATED------------RVALYALD-------- 132 (313)
T ss_dssp CCEEEEEEETTSTTCEEECT-TSCS--BEEEEEEECSSC----EEEEEECSS------------CEEEEEEE--------
T ss_pred ceeeEEEEccCCCCeeeEec-CCce--EEEEEeeecCce----EEEecccCC------------ceEEEEEe--------
Confidence 45789999986 36666662 3332 334456679999 999984433 23577664
Q ss_pred hhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeee
Q 003363 350 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (826)
Q Consensus 350 ~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 429 (826)
+|..+.|+.-...-+--. =.|++|+=.+--. .+..+++..|+.+|+.+.++.....
T Consensus 133 -----------gGklrkL~~vPpFsFVtD--I~~d~I~G~g~~~-------g~~~sfF~adl~SG~lri~tpkeGS---- 188 (313)
T d2hu7a1 133 -----------GGGLRELARLPGFGFVSD--IRGDLIAGLGFFG-------GGRVSLFTSNLSSGGLRVFDSGEGS---- 188 (313)
T ss_dssp -----------TTEEEEEEEESSCEEEEE--EETTEEEEEEEEE-------TTEEEEEEEETTTEEEEEECCSSEE----
T ss_pred -----------CCceeeeccCCCcceEEe--ccCCeEEEEeeec-------CCcceEEEEecccCCEEEecCCCCc----
Confidence 577777764322111111 2356665333221 1234589999988776655544322
Q ss_pred eeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC--------CeeeEEEeecCCE
Q 003363 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--------NFSWSLLTLDGDN 501 (826)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~--------~~~~~~~s~dg~~ 501 (826)
......+++.+ +...-...+...+..+|+.+++..++..... .+.|..+.|+++-
T Consensus 189 ----------------~~~ay~~~gnK-V~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L 251 (313)
T d2hu7a1 189 ----------------FSSASISPGMK-VTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRL 251 (313)
T ss_dssp ----------------EEEEEECTTSC-EEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCE
T ss_pred ----------------ccceeEccCce-eeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcE
Confidence 22344677776 4333334466666688999999999865443 3466677888875
Q ss_pred EEEE
Q 003363 502 IIAV 505 (826)
Q Consensus 502 l~~~ 505 (826)
++..
T Consensus 252 ~iia 255 (313)
T d2hu7a1 252 AVVA 255 (313)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4433
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.71 E-value=0.092 Score=50.28 Aligned_cols=94 Identities=9% Similarity=0.065 Sum_probs=53.6
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
..+++++..+....... .........++++|+|+ |+++.+ ....|+.++.
T Consensus 119 ~~~~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~-----~~v~~~--------------~~~~i~~~d~---------- 168 (260)
T d1rwia_ 119 NRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGN-----VYVTDT--------------DNNRVVKLEA---------- 168 (260)
T ss_dssp TEEEEECTTCSSCEECC-CCSCCSCCEEEECTTCC-----EEEEEG--------------GGTEEEEECT----------
T ss_pred ccccccccccceeeeee-ecccCCcceeeecCCCC-----Eeeecc--------------cccccccccc----------
Confidence 45777776665544431 22223456788899886 655432 2236888886
Q ss_pred hhhcCCCCCCcceecC-CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCC
Q 003363 353 ELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (826)
Q Consensus 353 ~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~ 414 (826)
++.....+. .........++.++|+ | |.+... ...|++++..++
T Consensus 169 -------~~~~~~~~~~~~~~~p~gi~~d~~g~-l-~vsd~~---------~~~i~~~~~~~~ 213 (260)
T d1rwia_ 169 -------ESNNQVVLPFTDITAPWGIAVDEAGT-V-YVTEHN---------TNQVVKLLAGST 213 (260)
T ss_dssp -------TTCCEEECCCSSCCSEEEEEECTTCC-E-EEEETT---------TTEEEEECTTCS
T ss_pred -------ccceeeeeeccccCCCccceeeeeee-e-eeeecC---------CCEEEEEeCCCC
Confidence 444333332 2334456678889997 4 444332 356888876553
|
| >d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Human 'protective protein', HPP species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.67 E-value=0.0045 Score=65.72 Aligned_cols=128 Identities=20% Similarity=0.243 Sum_probs=78.9
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHC---------------------CcEEEEECCC
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV---------------------GYSLLIVNYR 630 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~---------------------G~~Vl~~d~r 630 (826)
.+..+..|++...+ .....|+++++-|||+++.. + -.|.+. -..+|-+|.+
T Consensus 30 ~~~~lffw~~~s~~--~~~~~Pl~~wlnGGPG~SS~--~----g~~~e~GP~~v~~~~~~~~~N~~SW~~~anllfIDqP 101 (452)
T d1ivya_ 30 GSKHLHYWFVESQK--DPENSPVVLWLNGGPGCSSL--D----GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESP 101 (452)
T ss_dssp TTEEEEEEEECCSS--CGGGSCEEEEECCTTTBCTH--H----HHHTTTSSEEECTTSSCEEECTTCGGGSSEEEEECCS
T ss_pred CCceEEEEEEEcCC--CCCCCCEEEEECCCCcHHHH--H----HHHHccCCcEEcCCCCeeccCCcchhcccCEEEEecC
Confidence 35678888886553 33568999999999987531 1 111111 1578888975
Q ss_pred CCCCCchhhhhcCCCCCCcchHHHHHHHHH-HHHHcCCCCCCcEEEEEecchHHHHHHHHHh---CC-CceeEEEecCCc
Q 003363 631 GSLGFGEEALQSLPGKVGSQDVNDVLTAID-HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ---AP-DKFVAAAARNPL 705 (826)
Q Consensus 631 G~~g~G~~~~~~~~~~~~~~~~~D~~~~i~-~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~---~p-~~~~a~v~~~p~ 705 (826)
-..|+......... ........|+.++++ ++...+.....++.|+|.||||..+-.++.. .+ -.++++++.+|+
T Consensus 102 vGtGfS~~~~~~~~-~~~~~~a~d~~~~l~~f~~~fp~~~~~~~yi~GESYgG~y~P~ia~~i~~~~~i~l~Gi~igng~ 180 (452)
T d1ivya_ 102 AGVGFSYSDDKFYA-TNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGL 180 (452)
T ss_dssp TTSTTCEESSCCCC-CBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEESCC
T ss_pred CCcccccCCCCCCC-CCcHHHHHHHHHHHHHHHHhchhhcCCceEEeeccccchhhHHHHHHHHhcCcccccceEcCCCc
Confidence 33445443211111 111112455555554 4444444556789999999999988777643 22 358999999998
Q ss_pred cch
Q 003363 706 CNL 708 (826)
Q Consensus 706 ~~~ 708 (826)
.+.
T Consensus 181 ~d~ 183 (452)
T d1ivya_ 181 SSY 183 (452)
T ss_dssp SBH
T ss_pred cCc
Confidence 764
|
| >d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase L1 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.66 E-value=0.0019 Score=66.03 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=18.8
Q ss_pred CcEEEEEecchHHHHHHHHHhC
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQA 692 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~ 692 (826)
++|.|+||||||..+-+++...
T Consensus 105 ~kVnLIgHS~GGld~Ryl~~~l 126 (388)
T d1ku0a_ 105 GRVHIIAHSQGGQTARMLVSLL 126 (388)
T ss_dssp CCEEEEEETTHHHHHHHHHHHH
T ss_pred CceeEeecccccHHHHHHHHHh
Confidence 5899999999999998887643
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.58 E-value=0.067 Score=54.13 Aligned_cols=116 Identities=9% Similarity=0.028 Sum_probs=62.3
Q ss_pred CCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCC
Q 003363 162 SPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGS 240 (826)
Q Consensus 162 SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~ 240 (826)
.+||++|.. .+. ...++.+|+ +.-+..+++.++... ...+++.+++++..+..+... ...|.
T Consensus 96 tyDGrylFV-NDk--an~RVAvIdl~~fkt~kIi~iPn~~--------~~HG~r~~~~p~T~YV~~~~e-~~vP~----- 158 (459)
T d1fwxa2 96 KYDGRFLFM-NDK--ANTRVARVRCDVMKCDAILEIPNAK--------GIHGLRPQKWPRSNYVFCNGE-DETPL----- 158 (459)
T ss_dssp EEEEEEEEE-EET--TTTEEEEEETTTTEEEEEEECSSCC--------SEEEEEECCSSBCSEEEEEEC-SCEES-----
T ss_pred ccceeEEEE-EcC--CCceEEEEECcceeeeEEEecCCCC--------CCceeecccCCCeEEEEccCc-ccccc-----
Confidence 458998854 332 566788999 666777877765432 113566666666444333221 11110
Q ss_pred CCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEee
Q 003363 241 TKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGW 318 (826)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~ 318 (826)
...++...+. .+-...+-++|.++.++..- ..-........++|||++ +++++.
T Consensus 159 pndg~~l~d~------------------~~y~~~~t~ID~~tm~V~~Q--V~V~g~ld~~~~s~dGK~----af~Tsy 212 (459)
T d1fwxa2 159 VNDGTNMEDV------------------ANYVNVFTAVDADKWEVAWQ--VLVSGNLDNCDADYEGKW----AFSTSY 212 (459)
T ss_dssp SCSSSSTTCG------------------G-EEEEEEEEETTTTEEEEE--EEESSCCCCEEECSSSSE----EEEEES
T ss_pred CCCCccccch------------------hhcceEEEEEecCCceEEEE--eeeCCChhccccCCCCCE----EEEEec
Confidence 0001100000 00124566789988876532 122224557899999997 777663
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=94.17 E-value=0.18 Score=50.89 Aligned_cols=101 Identities=14% Similarity=0.068 Sum_probs=55.8
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCc-ce-eee--eeeeccCCCceEEEEccccc
Q 003363 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE-TR-KLG--IKYCYNRPCALYAVRVSLYK 346 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~-~~-~~g--~~~~~~~~~~l~~~d~~~~~ 346 (826)
.++.|.++|+++-++.++..+|.......+..+++++.. .||...+.. +. ..| +....+..+.+..+|.
T Consensus 108 an~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~---YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~---- 180 (459)
T d1fwxa2 108 ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSN---YVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDA---- 180 (459)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCS---EEEEEECSCEESSCSSSSTTCGG-EEEEEEEEET----
T ss_pred CCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeE---EEEccCccccccCCCCccccchhhcceEEEEEec----
Confidence 458899999999988776334544455556677788872 233322211 00 000 0000011123557776
Q ss_pred chhhhhhhhcCCCCCCcce-ecCCCCccccCceecCCCCEEEEEecc
Q 003363 347 SEASELELKESSSEDLPVV-NLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~-~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
++.++. ++. -.+......+||||+++++.+..
T Consensus 181 -------------~tm~V~~QV~-V~g~ld~~~~s~dGK~af~TsyN 213 (459)
T d1fwxa2 181 -------------DKWEVAWQVL-VSGNLDNCDADYEGKWAFSTSYN 213 (459)
T ss_dssp -------------TTTEEEEEEE-ESSCCCCEEECSSSSEEEEEESC
T ss_pred -------------CCceEEEEee-eCCChhccccCCCCCEEEEEecc
Confidence 444432 222 22345678999999998887754
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.88 E-value=6.5 Score=36.82 Aligned_cols=159 Identities=8% Similarity=-0.001 Sum_probs=76.3
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
..|.+++..+...+.+. ..........+..++|+ +++... ....++.++.
T Consensus 93 ~~i~~~~~~g~~~~~~~-~~~~~~p~~~avd~~G~-----i~v~~~--------------~~~~~~~~~~---------- 142 (279)
T d1q7fa_ 93 HQIQIYNQYGQFVRKFG-ATILQHPRGVTVDNKGR-----IIVVEC--------------KVMRVIIFDQ---------- 142 (279)
T ss_dssp CEEEEECTTSCEEEEEC-TTTCSCEEEEEECTTSC-----EEEEET--------------TTTEEEEECT----------
T ss_pred cccccccccccceeecC-CCcccccceeccccCCc-----EEEEee--------------ccceeeEecc----------
Confidence 46777776555444441 22222345667777776 444431 1225666664
Q ss_pred hhhcCCCCCCcceec--CCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeee
Q 003363 353 ELKESSSEDLPVVNL--TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (826)
Q Consensus 353 ~~~~~~~~~~~~~~L--t~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 430 (826)
++.....+ ...........+.++|+ |++.... ...|+++|..+.... . +
T Consensus 143 -------~g~~~~~~g~~~~~~~~~~i~~d~~g~-i~v~d~~----------~~~V~~~d~~G~~~~----------~-~ 193 (279)
T d1q7fa_ 143 -------NGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNR----------AHCVKVFNYEGQYLR----------Q-I 193 (279)
T ss_dssp -------TSCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGG----------GTEEEEEETTCCEEE----------E-E
T ss_pred -------CCceeecccccccccccceeeecccee-EEeeecc----------ccceeeeecCCceee----------e-e
Confidence 33323322 12223345566788886 4333332 257888886542111 1 1
Q ss_pred eccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE-EecCC-CC-CeeeEEEeecCC
Q 003363 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RITPA-ES-NFSWSLLTLDGD 500 (826)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~-~lt~~-~~-~~~~~~~s~dg~ 500 (826)
.. .+.+. .+..++..++|+ ||++ +..+...|..++. +|+.. .+... .. ......+.+||.
T Consensus 194 g~--~g~~~-----~P~giavD~~G~-i~Va-d~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~ 256 (279)
T d1q7fa_ 194 GG--EGITN-----YPIGVGINSNGE-ILIA-DNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGS 256 (279)
T ss_dssp SC--TTTSC-----SEEEEEECTTCC-EEEE-ECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTE
T ss_pred cc--ccccc-----CCcccccccCCe-EEEE-ECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCc
Confidence 11 11111 123567889997 6654 3333445666675 46643 33222 11 223334566653
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=90.73 E-value=8 Score=37.60 Aligned_cols=109 Identities=14% Similarity=-0.027 Sum_probs=61.4
Q ss_pred ceEEEEEccCCceEecc--CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeee--e-eeccCCCceEEEEcccccc
Q 003363 273 PSLFVININSGEVQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGI--K-YCYNRPCALYAVRVSLYKS 347 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~--~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~--~-~~~~~~~~l~~~d~~~~~~ 347 (826)
-.||.++.++.+.+.+. ..+.-....+++...||. ++|+....-...... . +-......++.+|
T Consensus 126 ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-----fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~------ 194 (340)
T d1v04a_ 126 VEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-----FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS------ 194 (340)
T ss_dssp EEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-----EEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC------
T ss_pred eEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-----EEEecCccCcChhhhhhhHhhcCCceeEEEEc------
Confidence 46777776666655442 123334677899999987 766632111000000 0 0000112344444
Q ss_pred hhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 348 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
++..+.+..+.......++|||+++|+..... ..+|+++++...+
T Consensus 195 -------------~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~----------~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 195 -------------PNDVRVVAEGFDFANGINISPDGKYVYIAELL----------AHKIHVYEKHANW 239 (340)
T ss_dssp -------------SSCEEEEEEEESSEEEEEECTTSSEEEEEEGG----------GTEEEEEEECTTS
T ss_pred -------------CCceEEEcCCCCccceeEECCCCCEEEEEeCC----------CCeEEEEEeCCCc
Confidence 34455555555567789999999988766654 3679999887644
|
| >d1lgya_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizopus niveus [TaxId: 4844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizopus niveus [TaxId: 4844]
Probab=87.96 E-value=0.38 Score=45.80 Aligned_cols=53 Identities=23% Similarity=0.250 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHh----CC----CceeEEEecCCcc
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ----AP----DKFVAAAARNPLC 706 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~----~p----~~~~a~v~~~p~~ 706 (826)
.+++...++.+++.. ...+|.+.|||+||.+|..++.. .| ..+......+|-+
T Consensus 116 ~~~i~~~v~~~~~~~--~~~~i~vtGHSLGGAlA~L~a~~l~~~~~~~~~~~i~~~tFG~Prv 176 (265)
T d1lgya_ 116 VNDYFPVVQEQLTAH--PTYKVIVTGHSLGGAQALLAGMDLYQREPRLSPKNLSIFTVGGPRV 176 (265)
T ss_dssp HHHHHHHHHHHHHHC--TTCEEEEEEETHHHHHHHHHHHHHHHHCTTCSTTTEEEEEESCCCC
T ss_pred HHHHHHHHHHHHhhC--CCceEEEEecccchHHHHHHHHHHHHhCcccCCCcceEEEecCccc
Confidence 445666666655542 23689999999999999887753 22 2355555555643
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=87.60 E-value=11 Score=35.05 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=15.3
Q ss_pred CCccccCCCEEEEEEEeCCeEEEEEE
Q 003363 448 SNPWLSDGCTMLLSSIWGSSQVIISV 473 (826)
Q Consensus 448 ~~~ws~Dg~~l~~~~~~~~~~~l~~v 473 (826)
.++..+||+ ||++ +...+..+|++
T Consensus 248 ~vav~~dG~-l~V~-~~n~~v~~fr~ 271 (279)
T d1q7fa_ 248 DVALMDDGS-VVLA-SKDYRLYIYRY 271 (279)
T ss_dssp EEEEETTTE-EEEE-ETTTEEEEEEC
T ss_pred EEEEeCCCc-EEEE-eCCCeEEEEEe
Confidence 556788985 6554 44556666665
|
| >d1uwca_ c.69.1.17 (A:) Feruloyl esterase A {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Feruloyl esterase A species: Aspergillus niger [TaxId: 5061]
Probab=87.16 E-value=0.58 Score=44.35 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHh---CCCceeEEEecCCcc
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ---APDKFVAAAARNPLC 706 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~---~p~~~~a~v~~~p~~ 706 (826)
..++...++.++++. ...+|.+.|||+||.+|..++.. ....++.....+|-+
T Consensus 108 ~~~i~~~i~~~~~~~--~~~~i~vTGHSLGGAlA~L~a~~l~~~~~~~~~~tFG~Prv 163 (261)
T d1uwca_ 108 QDQVESLVKQQASQY--PDYALTVTGHSLGASMAALTAAQLSATYDNVRLYTFGEPRS 163 (261)
T ss_dssp HHHHHHHHHHHHHHS--TTSEEEEEEETHHHHHHHHHHHHHHTTCSSEEEEEESCCCC
T ss_pred HHHHHHHHHHHHhhC--CCcceEEeccchhHHHHHHHHHHHHhcCCCcceEEecCccc
Confidence 345666666666653 23589999999999999877653 223455555556643
|
| >d3tgla_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizomucor miehei [TaxId: 4839]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizomucor miehei [TaxId: 4839]
Probab=86.25 E-value=0.68 Score=43.97 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHH
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG 690 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~ 690 (826)
..++...++.++++. ...+|.+.|||+||.+|..++.
T Consensus 115 ~~~i~~~i~~~~~~~--~~~~i~vtGHSLGGAlA~L~a~ 151 (265)
T d3tgla_ 115 QNELVATVLDQFKQY--PSYKVAVTGHSLGGATVLLCAL 151 (265)
T ss_dssp HHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCceEEEecccchHHHHHHHHH
Confidence 345556665555542 2468999999999999988765
|
| >d1tiba_ c.69.1.17 (A:) Triacylglycerol lipase {Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]
Probab=85.41 E-value=0.42 Score=45.61 Aligned_cols=52 Identities=15% Similarity=0.136 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhC---CCceeEEEecCCc
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPL 705 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~---p~~~~a~v~~~p~ 705 (826)
.+++...++.++++. ..-+|.+.|||+||.+|..++... ...++.....+|-
T Consensus 121 ~~~v~~~v~~~~~~~--~~~~i~vtGHSLGGalA~l~a~~l~~~~~~i~~~tFG~Pr 175 (269)
T d1tiba_ 121 ADTLRQKVEDAVREH--PDYRVVFTGHSLGGALATVAGADLRGNGYDIDVFSYGAPR 175 (269)
T ss_dssp HHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHHTTSSSCEEEEEESCCC
T ss_pred HHHHHHHHHHHHHhC--CCcceeeeccchHHHHHHHHHHHHHhccCcceEEEecCCC
Confidence 345666666666552 235899999999999998887632 1234444444443
|
| >d1tiaa_ c.69.1.17 (A:) Triacylglycerol lipase {Penicillium camembertii [TaxId: 5075]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Penicillium camembertii [TaxId: 5075]
Probab=85.33 E-value=0.35 Score=46.20 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHh
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 691 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~ 691 (826)
..++...++.+.++. ...+|.+.|||+||.+|..++..
T Consensus 120 ~~~i~~~i~~~~~~~--~~~~i~iTGHSLGGAlA~L~a~~ 157 (271)
T d1tiaa_ 120 RDDIIKELKEVVAQN--PNYELVVVGHSLGAAVATLAATD 157 (271)
T ss_pred HHHHHHHHHHHHHhC--CCceEEEeccchHHHHHHHHHHH
Confidence 345666666665542 23589999999999999887764
|
| >d1cexa_ c.69.1.30 (A:) Cutinase {Fungus (Fusarium solani), subsp. pisi [TaxId: 169388]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Cutinase-like domain: Cutinase species: Fungus (Fusarium solani), subsp. pisi [TaxId: 169388]
Probab=85.00 E-value=3.1 Score=37.01 Aligned_cols=80 Identities=19% Similarity=0.181 Sum_probs=48.1
Q ss_pred HCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCC----C
Q 003363 619 SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP----D 694 (826)
Q Consensus 619 ~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p----~ 694 (826)
..+..+-.++|.-...++... .+..-...-+.++...+....++ ....||+|+|+|.|+.++-.++...+ +
T Consensus 49 ~~~v~~~~v~~~y~a~~~~~~---~~~~s~~~G~~~~~~~i~~~a~~--CP~tkiVL~GYSQGA~V~~~~~~~l~~~~~~ 123 (197)
T d1cexa_ 49 KDGVWIQGVGGAYRATLGDNA---LPRGTSSAAIREMLGLFQQANTK--CPDATLIAGGYSQGAALAAASIEDLDSAIRD 123 (197)
T ss_dssp TTTEEEEECCTTCCCCGGGGG---STTSSCHHHHHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHHHHSCHHHHT
T ss_pred CCcceEeeecccccccccccc---ccccchhHHHHHHHHHHHHHHhh--CCCCeEEEeeeccccHhhhcccccCChhhhh
Confidence 345566677755432222111 11111112355666666666655 34579999999999999988877543 4
Q ss_pred ceeEEEecC
Q 003363 695 KFVAAAARN 703 (826)
Q Consensus 695 ~~~a~v~~~ 703 (826)
+++++++..
T Consensus 124 ~V~avvlfG 132 (197)
T d1cexa_ 124 KIAGTVLFG 132 (197)
T ss_dssp TEEEEEEES
T ss_pred hEEEEEEEe
Confidence 677777654
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=83.60 E-value=8.5 Score=39.09 Aligned_cols=17 Identities=6% Similarity=-0.423 Sum_probs=12.8
Q ss_pred CCCccccCCCEEEEEEEe
Q 003363 447 LSNPWLSDGCTMLLSSIW 464 (826)
Q Consensus 447 ~~~~ws~Dg~~l~~~~~~ 464 (826)
..+.|.|||+ ||++...
T Consensus 147 g~l~fgpDG~-LYvs~Gd 163 (450)
T d1crua_ 147 GRLVIGPDQK-IYYTIGD 163 (450)
T ss_dssp EEEEECTTSC-EEEEECC
T ss_pred cceeEcCCCC-EEEEecC
Confidence 4788999996 7777653
|