Citrus Sinensis ID: 003365

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820------
MERGVSTDDDGSIHLNVLELRTLSETAGSSTTVFEPQSSNGKGDSSSASSVSPMTPVVRAPEKKLTLFALRLAILEKTATGLGTLGFIWATVVLLGGFAITLDKTDFWFITIILLIEGARIFSRSHELEWQHQVTWSLAGAGINSFRAIKSGSHHLIEAVKSMFRPMVIGNHSQRTREKTERSVGSRNCQRKPTRTWESADVPLLPYAQWVFLTRNISKLLYWLQLASATACIVLSLMKLIKHNYGDVAKGDTDKRNREAALNIFYSLALAEAMLFLTEKAYWEWNVIYCKLLEEVNKECDLGPSGIISIRRFFYDAYSKCVNGSIFDGLKMDMVIFGMELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAVPLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMTREESSNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRDKATNVHIFKNLGLEMVLESVIETTAEIENFNIFSGTVGVSRHSVSIHSLAETALMLLMGG
ccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccccHHHHHHccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccEEEccccHHHHHHHHcccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHcccccHHHHHcccccHHHHHHHccccHHHcccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccHHHHHHHcHHHHHHHHHHHHHcccccEEEccccccccccccHHHHHHHHHHHHccc
cccccEcccccEEEEEEEHEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccHHHccccccccHEEEEEHHHHHHHHHcccccccccccccccccccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccEEEcccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHccccccHHHHHcHcccccHccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHHcHHHHHcEEEEEcccccccccccHHHHHHHHHHHHccc
mergvstdddgsihLNVLELRTlsetagssttvfepqssngkgdsssassvspmtpvvrapekKLTLFALRLAILEKTATGLGTLGFIWATVVLLGGFaitldktdFWFITIILLIEGARIFSRSHELEWQHQVTWSLAGAGINSFRAIKSGSHHLIEAVKSmfrpmvignhsqrtrektersvgsrncqrkptrtwesadvpllpyaQWVFLTRNISKLLYWLQLASATACIVLSLMKLIKhnygdvakgdtdkRNREAALNIFYSLALAEAMLFLTEKAYWEWNVIYCKLLEEVNkecdlgpsgiiSIRRFFYDAYskcvngsifdglKMDMVIFGMelldsnspdeqLIGARILRQFAmskrfsddtlQKIGINLSVIERFVEMlnwkdpqeEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQtnrssgaatdeigekkiildhanygfwtfnHLGLLILKKLARnhdncgkigntrgllpkiIDFTHAEEsllrnehdtssqILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDIllhgekhpllQKLGIDILtslaleedateriggtgGMLKELFNILFkegmpenqnCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAVPLVRVNAARILRNLCassgadcfnqlrgvtaaAPTILKAITSEDYKLQEVMIGLAAQVFRFMTREESSNIFERAGIMEIDLANTLVQILRKyqhppikvpRIRRYAIELAIWMMRDKATNVHIFKNLGLEMVLESVIETTAEIENFNIFSGTVGVSRHSVSIHSLAETALMLLMGG
mergvstdddgsihLNVLELRTLsetagssttvfepqssngkgdsssassvspmtpvvrapEKKLTLFALRLAILEKTATGLGTLGFIWATVVLLGGFAITLDKTDFWFITIILLIEGARIFSRSHELEWQHQVTWSLAGAGINSFRAIKSGSHHLIEAVKSMFRPMVIGnhsqrtrektersvgsrncqrkptrtwesadvplLPYAQWVFLTRNISKLLYWLQLASATACIVLSLMKLIKHNYgdvakgdtdkRNREAALNIFYSLALAEAMLFLTEKAYWEWNVIYCKLLEEVNKECDLGPSGIISIRRFFYDAYSKCVNGSIFDGLKMDMVIFGMELLDSNSPDEQLIGARILRQFAMskrfsddtlqkIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSklagkkqnslRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKigntrgllpKIIDFTHAEEsllrnehdtssqilTVRRSLQLVKMLAsttgitgehlrREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAVPLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMTREESSNIFERAGIMEIDLANTLVQILRkyqhppikvprIRRYAIELAIWMMRDKATNVHIFKNLGLEMVLESVIETTAEIENFNIFSGTVGVSRHSVSIHSLAETALMLLMGG
MERGVSTDDDGSIHLNVLELRTLSETAGSSTTVFEPQssngkgdsssassvsPMTPVVRAPEKKLTLFALRLAILEKTATGLGTLGFIWATVVLLGGFAITLDKTDFWFITIILLIEGARIFSRSHELEWQHQVTWSLAGAGINSFRAIKSGSHHLIEAVKSMFRPMVIGNHSQRTREKTERSVGSRNCQRKPTRTWESADVPLLPYAQWVFLTRNISKLLYWLQLASATACIVLSLMKLIKHNYGDVAKGDTDKRNREAALNIFYSLALAEAMLFLTEKAYWEWNVIYCKLLEEVNKECDLGPSGIISIRRFFYDAYSKCVNGSIFDGLKMDMVIFGMELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAVPLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMTREESSNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRDKATNVHIFKNLGLEMVLESVIETTAEIENFNIFSGTVGVSRHSVSIHSLAETALMLLMGG
**************************************************************KKLTLFALRLAILEKTATGLGTLGFIWATVVLLGGFAITLDKTDFWFITIILLIEGARIFSRSHELEWQHQVTWSLAGAGINSFRAIKSGSHHLIEAVKSMFRPMVI***************************WESADVPLLPYAQWVFLTRNISKLLYWLQLASATACIVLSLMKLIKHNYGDVAKGDTDKRNREAALNIFYSLALAEAMLFLTEKAYWEWNVIYCKLLEEVNKECDLGPSGIISIRRFFYDAYSKCVNGSIFDGLKMDMVIFGMELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWK******************************************************IGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNE**TSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAVPLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMTREESSNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRDKATNVHIFKNLGLEMVLESVIETTAEIENFNIFSGTVGVSRHSVSIHSLAETALMLL***
***************************************************************KLTLFALRLAILEKTATGLGTLGFIWATVVLLGGFAITLDKTDFWFITIILLIEGARIFSRSHELEWQHQVTWSLAGAGINSFRAIKSGSHHLIEAVKSMFRPMVI**********TERSVGSRNCQRKPTRTWESADVPLLPYAQWVFLTRNISKLLYWLQLASATACIVLSLMKLIKHNYG*********RNREAALNIFYSLALAEAMLFLTEKAYWEWNVIYCKLLEEVNKECDLGPSGIISIRRFFYDAYSKCVNGSIFDGLKMDMVIFGME**********LIGARILRQFAM**************NLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQ******************LDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEED******GTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAVPLVRVNAARILRNLCASSGADCFNQLRGVTAAA***************EVMIGLAAQVFRFMTREESSNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRDKATNVHIFKNLGLEMVLESVIETTAEIENFNIFSGTVGVSRHSVSIHSLAETALMLLM**
*********DGSIHLNVLELRTLSET******************************VVRAPEKKLTLFALRLAILEKTATGLGTLGFIWATVVLLGGFAITLDKTDFWFITIILLIEGARIFSRSHELEWQHQVTWSLAGAGINSFRAIKSGSHHLIEAVKSMFRPMVIGNH************************WESADVPLLPYAQWVFLTRNISKLLYWLQLASATACIVLSLMKLIKHNYGDVAKGDTDKRNREAALNIFYSLALAEAMLFLTEKAYWEWNVIYCKLLEEVNKECDLGPSGIISIRRFFYDAYSKCVNGSIFDGLKMDMVIFGMELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAVPLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMTREESSNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRDKATNVHIFKNLGLEMVLESVIETTAEIENFNIFSGTVGVSRHSVSIHSLAETALMLLMGG
*********DGSIHLNVLELRTLS**********************************RAPEKKLTLFALRLAILEKTATGLGTLGFIWATVVLLGGFAITLDKTDFWFITIILLIEGARIFSRSHELEWQHQVTWSLAGAGINSFRAIKSGSHHLIEAVKSMFRPMVIGNH************GSRNCQRKPTRTWESADVPLLPYAQWVFLTRNISKLLYWLQLASATACIVLSLMKLIKHNYGDVAKGDTDKRNREAALNIFYSLALAEAMLFLTEKAYWEWNVIYCKLLEEVNKECDLGPSGIISIRRFFYDAYSKCVNGSIFDGLKMDMVIFGMELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNR*****************HANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAVPLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMTREESSNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRDKATNVHIFKNLGLEMVLESVIETTAEIENFNIFSGTVGVSRHSVSIHSLAETALMLLM**
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MERGVSTDDDGSIHLNVLELRTLSETAGSSTTVFEPQSSNGKGDSSSASSVSPMTPVVRAPEKKLTLFALRLAILEKTATGLGTLGFIWATVVLLGGFAITLDKTDFWFITIILLIEGARIFSRSHELEWQHQVTWSLAGAGINSFRAIKSGSHHLIEAVKSMFRPMVIGNHSQRTREKTERSVGSRNCQRKPTRTWESADVPLLPYAQWVFLTRNISKLLYWLQLASATACIVLSLMKLIKHNYGDVAKGDTDKRNREAALNIFYSLALAEAMLFLTEKAYWEWNVIYCKLLEEVNKECDLGPSGIISIRRFFYDAYSKCVNGSIFDGLKMDMVIFGMELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAVPLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMTREESSNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRDKATNVHIFKNLGLEMVLESVIETTAEIENFNIFSGTVGVSRHSVSIHSLAETALMLLMGG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query826
225432500829 PREDICTED: uncharacterized protein LOC10 0.987 0.984 0.753 0.0
147801939829 hypothetical protein VITISV_033556 [Viti 0.987 0.984 0.753 0.0
255551507839 conserved hypothetical protein [Ricinus 0.987 0.972 0.760 0.0
224107257826 predicted protein [Populus trichocarpa] 0.990 0.990 0.742 0.0
224102583827 predicted protein [Populus trichocarpa] 0.993 0.992 0.734 0.0
356546448822 PREDICTED: uncharacterized protein LOC10 0.981 0.986 0.730 0.0
356557872830 PREDICTED: uncharacterized protein LOC10 0.980 0.975 0.716 0.0
357447641837 hypothetical protein MTR_2g021310 [Medic 0.991 0.978 0.708 0.0
449433351826 PREDICTED: uncharacterized protein LOC10 0.969 0.969 0.722 0.0
449517623826 PREDICTED: uncharacterized LOC101204674 0.969 0.969 0.720 0.0
>gi|225432500|ref|XP_002279739.1| PREDICTED: uncharacterized protein LOC100256318 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1277 bits (3305), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/821 (75%), Positives = 712/821 (86%), Gaps = 5/821 (0%)

Query: 8   DDDGSIHLNVLELRTLSETAGSSTTVFEPQSSNGKGDSSSASSVSPMTPVVRAPEKKLTL 67
           +D GS+HL V EL  LS    S  T+F PQS   KGDS++++SVS + P V APEK+LT+
Sbjct: 6   EDGGSVHLQVSELTKLSGACSSGDTMFTPQSRIEKGDSNNSNSVSEIRPAVSAPEKQLTI 65

Query: 68  FALRLAILEKTATGLGTLGFIWATVVLLGGFAITLDKTDFWFITIILLIEGARIFSRSHE 127
           FALRLA+LEK AT LGTLGFIWATVVLLGGFAITL KTDFWFITIILLIEG RIFSRSHE
Sbjct: 66  FALRLAVLEKVATSLGTLGFIWATVVLLGGFAITLAKTDFWFITIILLIEGTRIFSRSHE 125

Query: 128 LEWQHQVTWSLAGAGINSFRAIKSGSHHLIEAVKSMFRPMVIGNHSQRTRE-----KTER 182
           LEWQHQ TWS+  AGINSFRA++S SH L E VKS+ RP+ +   SQ +RE       E 
Sbjct: 126 LEWQHQATWSVTDAGINSFRALRSSSHFLFETVKSICRPIAVRKQSQHSREVSGRNNPEA 185

Query: 183 SVGSRNCQRKPTRTWESADVPLLPYAQWVFLTRNISKLLYWLQLASATACIVLSLMKLIK 242
           S G+   ++ P+RTW+++DVPLLPYA WVFL+RNISKLLYWLQL SATAC+VLSL+KLIK
Sbjct: 186 SPGNWGTRKMPSRTWKTSDVPLLPYAPWVFLSRNISKLLYWLQLLSATACVVLSLLKLIK 245

Query: 243 HNYGDVAKGDTDKRNREAALNIFYSLALAEAMLFLTEKAYWEWNVIYCKLLEEVNKECDL 302
           H+YG+VAKGD+DKRNR++AL IFY+LALAEA++FL EKAYWEW + +C+LLE+VNKECDL
Sbjct: 246 HDYGEVAKGDSDKRNRKSALTIFYALALAEALMFLVEKAYWEWKLSFCRLLEKVNKECDL 305

Query: 303 GPSGIISIRRFFYDAYSKCVNGSIFDGLKMDMVIFGMELLDSNSPDEQLIGARILRQFAM 362
           G +G++SIRRFFYDAYSKCVNGSIFDGLKMDMV F M+LL SNSPDEQLIGARILRQFAM
Sbjct: 306 GDTGMVSIRRFFYDAYSKCVNGSIFDGLKMDMVSFAMDLLASNSPDEQLIGARILRQFAM 365

Query: 363 SKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGI 422
           S+R+SDDTLQKIGINL VIER VEMLNWKDPQEEEIR+SAAEILSKLAGKKQNSLRVAGI
Sbjct: 366 SERYSDDTLQKIGINLPVIERLVEMLNWKDPQEEEIRQSAAEILSKLAGKKQNSLRVAGI 425

Query: 423 PGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCG 482
           PGAMESISSLLQT+R+  +A DEI EKKII D  NYG+WTFNHLGLLILKKLAR+HDNCG
Sbjct: 426 PGAMESISSLLQTHRNPSSAPDEICEKKIIFDQGNYGYWTFNHLGLLILKKLARDHDNCG 485

Query: 483 KIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRRE 542
           KIGNTRGLLPKI+DFTHAE+ LL++E+ T SQILTV+RSLQLVKMLASTTG TG+ LR E
Sbjct: 486 KIGNTRGLLPKIVDFTHAEDRLLKDENVTQSQILTVKRSLQLVKMLASTTGSTGKLLRSE 545

Query: 543 ISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILF 602
           ISEVVFTISNIR+IL +GEKHP LQKLGI+ILTSLALEE+ATERIGGTGG+LK LFNI F
Sbjct: 546 ISEVVFTISNIREILRNGEKHPKLQKLGIEILTSLALEENATERIGGTGGVLKGLFNIFF 605

Query: 603 KEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAVPLVRVNAARILR 662
           K+GM  +QN V+IAAG+ALAML +DSKSNCHRILKLKV++KLV  L VPL+ VNAARILR
Sbjct: 606 KQGMAGDQNHVKIAAGQALAMLTMDSKSNCHRILKLKVLEKLVGALEVPLLSVNAARILR 665

Query: 663 NLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMTREESSNIFE 722
           NLCA SG++CFNQL GV AAAPT+LKAI SE+ KLQEVM+GLAA  F+FMT EESS  FE
Sbjct: 666 NLCAFSGSECFNQLTGVRAAAPTVLKAIMSEENKLQEVMLGLAAHGFKFMTSEESSVFFE 725

Query: 723 RAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRDKATNVHIFKNLGLEMV 782
           + GI E+ LA+ LV+ILRKY++PPIKVPRIRR+ IELAIWMMRDK TNVHIFK+LG+E  
Sbjct: 726 KTGIKEVHLAHELVEILRKYKYPPIKVPRIRRFTIELAIWMMRDKETNVHIFKDLGMEKE 785

Query: 783 LESVIETTAEIENFNIFSGTVGVSRHSVSIHSLAETALMLL 823
           LE V+ETT+EIE+FNIFSGTVG++RH  S+HSL ETAL LL
Sbjct: 786 LEGVLETTSEIESFNIFSGTVGLNRHGTSMHSLVETALKLL 826

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147801939|emb|CAN70618.1| hypothetical protein VITISV_033556 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255551507|ref|XP_002516799.1| conserved hypothetical protein [Ricinus communis] gi|223543887|gb|EEF45413.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224107257|ref|XP_002314424.1| predicted protein [Populus trichocarpa] gi|222863464|gb|EEF00595.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224102583|ref|XP_002312735.1| predicted protein [Populus trichocarpa] gi|222852555|gb|EEE90102.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356546448|ref|XP_003541638.1| PREDICTED: uncharacterized protein LOC100815064 [Glycine max] Back     alignment and taxonomy information
>gi|356557872|ref|XP_003547234.1| PREDICTED: uncharacterized protein LOC100782145 [Glycine max] Back     alignment and taxonomy information
>gi|357447641|ref|XP_003594096.1| hypothetical protein MTR_2g021310 [Medicago truncatula] gi|355483144|gb|AES64347.1| hypothetical protein MTR_2g021310 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449433351|ref|XP_004134461.1| PREDICTED: uncharacterized protein LOC101204674 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449517623|ref|XP_004165845.1| PREDICTED: uncharacterized LOC101204674 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query826
TAIR|locus:2179649835 AT5G18980 "AT5G18980" [Arabido 0.980 0.970 0.662 1.5e-287
TAIR|locus:2082470840 AT3G06210 "AT3G06210" [Arabido 0.981 0.965 0.641 7.2e-274
TAIR|locus:2129580798 AT4G14280 [Arabidopsis thalian 0.910 0.942 0.577 5.2e-223
TAIR|locus:2179649 AT5G18980 "AT5G18980" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2762 (977.3 bits), Expect = 1.5e-287, P = 1.5e-287
 Identities = 560/845 (66%), Positives = 671/845 (79%)

Query:     3 RGVSTDDDGSIHLNVLELRTLSETAGSSTTVFEPQXXXXXXXXXXXXXXXPMTPV----- 57
             R    D+D SI L V EL+ L E  GS+ TVF+ +                ++       
Sbjct:     4 RKFEEDEDRSIRLQVSELQKLEEAIGSTDTVFDLRSSIEKGDSGETADAASISSATAFRR 63

Query:    58 ---VRAPEKKLTLFALRLAILEKTATGLGTLGFIWATVVLLGGFAITLDKTDFWFITIIL 114
                V APEKKLTLFAL+LAILEKTATG+GTLGFIWATVVLLGGFAITLD +DFWFITIIL
Sbjct:    64 KSTVPAPEKKLTLFALQLAILEKTATGIGTLGFIWATVVLLGGFAITLDGSDFWFITIIL 123

Query:   115 LIEGARIFSRSHELEWQHQVTWSLAGAGINSFRAIKSGSHHLIEAVK----SMFRPMVIG 170
             LIEGARIFSRSHELEWQHQ TW++AG GI+SFRA++S S  L + +K    S+F+P    
Sbjct:   124 LIEGARIFSRSHELEWQHQATWTVAGVGISSFRALRSSSASLFKNLKRISDSIFKP---- 179

Query:   171 NHSQRTREKTERSVGSRNCQRKPT--RTWESADVPLLPYAQWVFLTRNISKLLYWLQLAS 228
                 R+RE T     +R+C    T   TW+++DVPLLPYA+W F++  +S+LLYWLQL S
Sbjct:   180 ----RSREAT-----ARDCVVPETTLETWKNSDVPLLPYARWFFISSTVSRLLYWLQLLS 230

Query:   229 ATACIVLSLMKLIKHNYGDVAKGDTDKRNREAALNIFYSLALAEAMLFLTEKAYWEWNVI 288
             ATAC+ LS  KLI+HNYGDV KGDTDKRNR++ALNIFYSLA AEA+LFL EK YWEW V 
Sbjct:   231 ATACVALSSYKLIRHNYGDVHKGDTDKRNRQSALNIFYSLAFAEALLFLVEKVYWEWQVS 290

Query:   289 YCKLLEEVNKECDLGPSGIISIRRFFYDAYSKCVNGSIFDGLKMDMVIFGMELLDSNSPD 348
              C LLE V +EC+ G SG++SI+RFFYD+YSKCVNGSIFDGLKMD+V FGMELL+SNS D
Sbjct:   291 VCNLLENVTRECEFGVSGLVSIKRFFYDSYSKCVNGSIFDGLKMDIVSFGMELLNSNSSD 350

Query:   349 EQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSK 408
             EQLIG RILRQF++++R+S+DTL+KIGIN  VIER VEMLNWKD QEEEIRRSAAEILSK
Sbjct:   351 EQLIGVRILRQFSVTERYSEDTLEKIGINFPVIERLVEMLNWKDLQEEEIRRSAAEILSK 410

Query:   409 LAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDH-ANYGFWTFNHLG 467
             LAGKKQNSLRVAGI GAMESISSLL+  RSSG A DEIGEKK+  DH  +Y FW FN+LG
Sbjct:   411 LAGKKQNSLRVAGISGAMESISSLLENTRSSGEAPDEIGEKKVFHDHNLHYDFWRFNNLG 470

Query:   468 LLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEH-DTS-SQILTVRRSLQLV 525
             LLILKKLA++HDNCGK+GNTRGLLPKIIDFTHA+E+LLR+E+ D + S++LT++RSLQLV
Sbjct:   471 LLILKKLAKDHDNCGKLGNTRGLLPKIIDFTHADENLLRDENADIARSRVLTLKRSLQLV 530

Query:   526 KMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATE 585
             KMLASTTG TG+ LRREISE+VFT+SN+RD+L HG ++P LQKLGI ILT+LALE +A E
Sbjct:   531 KMLASTTGNTGKCLRREISEIVFTVSNVRDVLKHGARYPKLQKLGIGILTNLALEAEARE 590

Query:   586 RIGGTGGMLKELFNILFKE---GMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVD 642
             RIGGTGG+LKELFNI FK    G   N+ CVRIAAGEA+AML L+SKSNC  +L+L V+ 
Sbjct:   591 RIGGTGGVLKELFNIFFKRETRGDEGNEGCVRIAAGEAIAMLVLESKSNCLHVLRLGVMG 650

Query:   643 KLVETLAVPLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMI 702
             +LVE L VP +RVNAAR+LRN+C  SG +CF+ L+ V AAAPT+LK+ITSED KLQEVM+
Sbjct:   651 RLVEALEVPSIRVNAARVLRNMCLYSGDECFHDLKFVKAAAPTVLKSITSEDNKLQEVMV 710

Query:   703 GLAAQVFRFMTREESSNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIW 762
             GLAAQVFRFM+ +ESS +F  +GI   +LAN+LV IL+K   P IKVPRIRR+ IELAIW
Sbjct:   711 GLAAQVFRFMSSKESSYVFMYSGIKRQELANSLVSILKKNDKPAIKVPRIRRFVIELAIW 770

Query:   763 MMRDKAT--NVHIFKNLGLEMVLESVIETTAEIENFNIFSGTVGVSRHSVSIHSLAETAL 820
             MM D     NV +F+ +GLE  LE V+ETTAE+ENF++FSGTVG+SRHS ++HSLAE AL
Sbjct:   771 MMEDDELEDNVALFREMGLEKELEKVLETTAELENFDVFSGTVGLSRHSRTVHSLAELAL 830

Query:   821 MLLMG 825
              +L G
Sbjct:   831 EILRG 835
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2082470 AT3G06210 "AT3G06210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129580 AT4G14280 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00019883001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (829 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 826
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.04
PF05804708 KAP: Kinesin-associated protein (KAP) 98.81
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.78
KOG4224550 consensus Armadillo repeat protein VAC8 required f 98.38
PF05804708 KAP: Kinesin-associated protein (KAP) 98.37
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 97.58
KOG0166 514 consensus Karyopherin (importin) alpha [Intracellu 97.34
KOG4224550 consensus Armadillo repeat protein VAC8 required f 97.26
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 97.03
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 96.92
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 96.56
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 96.5
KOG4199461 consensus Uncharacterized conserved protein [Funct 96.45
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 96.31
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 95.25
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 95.04
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 94.74
KOG1048717 consensus Neural adherens junction protein Plakoph 94.65
KOG1222 791 consensus Kinesin associated protein KAP [Intracel 93.23
PRK09687280 putative lyase; Provisional 93.1
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 93.06
PF05536 543 Neurochondrin: Neurochondrin 92.78
COG5064 526 SRP1 Karyopherin (importin) alpha [Intracellular t 92.71
KOG1048717 consensus Neural adherens junction protein Plakoph 92.0
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 91.96
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 89.84
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 89.74
PF06025379 DUF913: Domain of Unknown Function (DUF913); Inter 88.03
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 86.84
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 85.73
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 85.17
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 85.13
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 84.68
KOG0213 1172 consensus Splicing factor 3b, subunit 1 [RNA proce 84.31
PRK09687280 putative lyase; Provisional 84.26
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 83.88
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 83.76
KOG4199461 consensus Uncharacterized conserved protein [Funct 81.52
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 81.34
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 81.09
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information 
Probab=99.04  E-value=6.2e-08  Score=125.27  Aligned_cols=283  Identities=21%  Similarity=0.253  Sum_probs=218.9

Q ss_pred             cchhHHHHHhhcCC--CcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH
Q 003365          332 MDMVIFGMELLDSN--SPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKL  409 (826)
Q Consensus       332 ~~LVtFA~dll~S~--S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~L  409 (826)
                      +.-|.|.++-|.+.  |+++|-.++.-|..|.+..+.   .-+-|....+.+..|+.+|...   +.++|..|+.++..|
T Consensus        12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~e---nR~~Ia~~aGaIP~LV~lL~sg---~~~vk~nAaaaL~nL   85 (2102)
T PLN03200         12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREE---ARKAIGSHSQAMPLLVSLLRSG---TLGAKVNAAAVLGVL   85 (2102)
T ss_pred             HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChH---HHHHHHHccCcHHHHHHHHcCC---CHHHHHHHHHHHHHH
Confidence            56789999999977  778999999999999987652   2222555688999999999743   478999999999999


Q ss_pred             hccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhcc--c-ccccccc
Q 003365          410 AGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNH--D-NCGKIGN  486 (826)
Q Consensus       410 A~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~--~-NC~~I~~  486 (826)
                      +.++.|.-.|.. +|++..+-.+|+.++.                       +.......+|..|+.+.  | |...|..
T Consensus        86 S~~e~nk~~Iv~-~GaIppLV~LL~sGs~-----------------------eaKe~AA~AL~sLS~~~~~D~~~~~I~v  141 (2102)
T PLN03200         86 CKEEDLRVKVLL-GGCIPPLLSLLKSGSA-----------------------EAQKAAAEAIYAVSSGGLSDHVGSKIFS  141 (2102)
T ss_pred             hcCHHHHHHHHH-cCChHHHHHHHHCCCH-----------------------HHHHHHHHHHHHHHcCcchhhhhhhhhh
Confidence            998777766775 8999999999986531                       33456788999999864  4 4457877


Q ss_pred             ccCchhhhhcccccchhhhcccCCChhHHH-HHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChH
Q 003365          487 TRGLLPKIIDFTHAEESLLRNEHDTSSQIL-TVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPL  565 (826)
Q Consensus       487 t~gLIsKII~ft~~~~~ll~~~~~~~~~~~-iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~e  565 (826)
                      +.|.||.++......+          .+.. +.+.+.-+|..|+...++.+    +.|.+. ..+..|.++|.++  +++
T Consensus       142 ~~GaVp~Lv~lL~~gs----------k~d~~L~~~Av~AL~nLs~~~en~~----~~IIea-GaVp~LV~LLsS~--d~~  204 (2102)
T PLN03200        142 TEGVVPSLWDQLQPGN----------KQDKVVEGLLTGALRNLCGSTDGFW----SATLEA-GGVDILVKLLSSG--NSD  204 (2102)
T ss_pred             hcCChHHHHHHHhCCc----------hhhHHHHHHHHHHHHHHhcCccchH----HHHHHc-CCHHHHHHHHcCC--CHH
Confidence            8899999998664321          1223 33557889999998876655    455555 6888899999764  489


Q ss_pred             HHHHHHHHHHhccCC-ccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHH
Q 003365          566 LQKLGIDILTSLALE-EDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKL  644 (826)
Q Consensus       566 Lq~lAi~ILt~LA~D-~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~L  644 (826)
                      +|..|+.+|.+++.. ++.++.+...+ .|..|++ |+.++   +...+|..|..||..|+.++..+...|.+.+.+..|
T Consensus       205 lQ~eAa~aLa~Lass~ee~~~aVIeaG-aVP~LV~-LL~sg---~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~L  279 (2102)
T PLN03200        205 AQANAASLLARLMMAFESSISKVLDAG-AVKQLLK-LLGQG---NEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPAL  279 (2102)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHCC-CHHHHHH-HHccC---CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHH
Confidence            999999999999876 55677766554 4688998 66543   223578899999999999999999999988889999


Q ss_pred             HHhhccch-----------hHHHHHHHHHHHhh
Q 003365          645 VETLAVPL-----------VRVNAARILRNLCA  666 (826)
Q Consensus       645 v~mL~d~~-----------~r~~AA~IL~nLC~  666 (826)
                      +..+..+.           .+..|+.-|.|+|.
T Consensus       280 I~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg  312 (2102)
T PLN03200        280 INATVAPSKEFMQGEFAQALQENAMGALANICG  312 (2102)
T ss_pred             HHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence            98886422           37799999999997

>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query826
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 5e-12
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 4e-10
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 8e-09
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 1e-10
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 1e-09
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 1e-06
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 6e-10
2jdq_A 450 Importin alpha-1 subunit; transport, PB2 subunit, 9e-05
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 1e-09
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 7e-09
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 1e-05
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 1e-08
3nmz_A458 APC variant protein; protein-protein complex, arma 4e-08
3nmz_A458 APC variant protein; protein-protein complex, arma 3e-05
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 2e-06
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 4e-06
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 5e-05
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 1e-04
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 3e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 69.5 bits (169), Expect = 3e-12
 Identities = 76/546 (13%), Positives = 151/546 (27%), Gaps = 169/546 (30%)

Query: 107 FWFITIILLIEGARIFSRSHELEWQHQVTWSLAGAGINSFRAIKSGSHHLIEAVKSMFRP 166
           FW     LL +   +  +  E   +    + L        R     +   IE    ++  
Sbjct: 68  FW----TLLSKQEEMVQKFVEEVLRINYKF-LMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 167 MVIGNHSQRTREKTERSVGSRNC--QRKPTR------------TWESADVPLLPYAQWVF 212
             +      +R +    +  R    + +P +            TW + DV  L Y     
Sbjct: 123 NQVFAKYNVSRLQPYLKL--RQALLELRPAKNVLIDGVLGSGKTWVALDV-CLSYKVQCK 179

Query: 213 LTRNISKLLYWLQLA---SATACI--VLSLMKLIKHNYGDVAKGDTDKRNR-----EAAL 262
           +   I    +WL L    S    +  +  L+  I  N+   +   ++ + R         
Sbjct: 180 MDFKI----FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 263 NIFYSLALAEAMLFLTEKAYWEWNVI-----YCKLL-----EEVNKECDLGPSGIISIRR 312
            +  S      +L L                 CK+L     ++V        +  IS+  
Sbjct: 236 RLLKSKPYENCLLVLLN--VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 313 F---FYDAYS-----KCVNGSIFDGLKMDMVIFGMELLDSNSPDEQLIGARILRQFAMSK 364
                          K ++    D L  +++        S      +I   I    A   
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQD-LPREVLT-TNPRRLS------IIAESIRDGLATWD 345

Query: 365 RFSDDTLQKIGINLSVIERFVEMLN----------------------------WKDPQEE 396
            +      K+    ++IE  + +L                             W D  + 
Sbjct: 346 NWKHVNCDKLT---TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402

Query: 397 EIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHA 456
           ++     ++      +KQ       IP     I   L+         +E    + I+DH 
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPS----IYLELKVKLE-----NEYALHRSIVDHY 453

Query: 457 NY---------------GFWTFNHLG------------------LL----ILKKLARNHD 479
           N                 ++ ++H+G                   L    + +K+  +  
Sbjct: 454 NIPKTFDSDDLIPPYLDQYF-YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512

Query: 480 NCGKIGNTRGLL--------------PK-------IIDFTH-AEESLLRNEHDTSSQILT 517
                G+    L              PK       I+DF    EE+L+ +++   + +  
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY---TDL-- 567

Query: 518 VRRSLQ 523
           +R +L 
Sbjct: 568 LRIALM 573
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query826
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.46
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.44
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.4
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.4
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 99.37
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.31
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.31
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 99.29
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.26
3nmz_A458 APC variant protein; protein-protein complex, arma 99.25
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.23
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.22
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.2
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.19
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 99.18
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.17
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 99.16
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.14
3nmz_A458 APC variant protein; protein-protein complex, arma 99.12
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.11
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.11
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 99.09
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 99.08
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.07
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.07
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.04
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.02
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 98.96
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.96
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.77
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.7
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.6
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 98.46
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.18
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 98.09
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 98.09
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 98.06
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.73
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 97.22
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 96.98
3grl_A651 General vesicular transport factor P115; vesicle t 96.94
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 96.77
1qgr_A 876 Protein (importin beta subunit); transport recepto 96.56
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 96.29
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 96.08
1qgr_A 876 Protein (importin beta subunit); transport recepto 95.6
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 95.55
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 95.52
1b3u_A 588 Protein (protein phosphatase PP2A); scaffold prote 95.39
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 95.18
3grl_A 651 General vesicular transport factor P115; vesicle t 95.06
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 94.87
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 94.06
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 93.96
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 93.9
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 93.74
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 93.32
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 93.13
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 93.0
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 91.88
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 91.29
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 91.23
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 90.54
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 89.82
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 89.79
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 89.44
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 89.26
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 83.59
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 83.47
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 81.38
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
Probab=99.46  E-value=2.8e-12  Score=146.27  Aligned_cols=385  Identities=14%  Similarity=0.163  Sum_probs=256.7

Q ss_pred             HHHhhcCCCcchhhhhhHHHHHHhhCcCC--chHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCC
Q 003365          338 GMELLDSNSPDEQLIGARILRQFAMSKRF--SDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQN  415 (826)
Q Consensus       338 A~dll~S~S~~~qL~GvriL~~~l~~~~~--~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~n  415 (826)
                      -|.-++|+.++.|+.+++-+..+|.+++.  .++.+     ..+.|.+||+.|...  .+.+++..||+++.++|.+...
T Consensus        62 ~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii-----~~G~ip~LV~lL~~~--~~~~lq~~Aa~aL~nias~~~e  134 (510)
T 3ul1_B           62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNII-----RAGLIPKFVSFLGKT--DCSPIQFESAWALTNIASGTSE  134 (510)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHH-----HTTHHHHHHHHTTCT--TCHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHH-----HCCCHHHHHHHHCCC--CCHHHHHHHHHHHHHHhcCCHH
Confidence            35678999999999999999999976542  22222     237899999999754  3478999999999999864211


Q ss_pred             c-eEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCchhhh
Q 003365          416 S-LRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKI  494 (826)
Q Consensus       416 s-Lrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKI  494 (826)
                      . -.|+. -|++..+..||..++.                       ++..+....|.+||.|..+|+.+.-..|.++.+
T Consensus       135 ~~~~vv~-~GaIp~Lv~lL~s~~~-----------------------~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~L  190 (510)
T 3ul1_B          135 QTKAVVD-GGAIPAFISLLASPHA-----------------------HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPL  190 (510)
T ss_dssp             HHHHHHH-TTHHHHHHHHTTCSCH-----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHH-CCCHHHHHHHHcCCCH-----------------------HHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHH
Confidence            1 12222 5899999999875421                       456778899999999988888877777999999


Q ss_pred             hcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHH
Q 003365          495 IDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDIL  574 (826)
Q Consensus       495 I~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~IL  574 (826)
                      +.+.....       .......+++.+...+..+........     ++.....++..|...|.+.  +++.+..|...|
T Consensus       191 l~lL~~~~-------~~~~~~~~~~~a~~~L~nl~~~~~~~~-----~~~~~~~~lp~L~~LL~~~--~~~v~~~A~~aL  256 (510)
T 3ul1_B          191 LALLAVPD-------LSTLACGYLRNLTWTLSNLCRNKNPAP-----PLDAVEQILPTLVRLLHHN--DPEVLADSCWAI  256 (510)
T ss_dssp             HHHTCSSC-------GGGSCHHHHHHHHHHHHHHHCCCSSCC-----CHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHH
T ss_pred             HHHHHhcc-------chhhhHHHHHHHHHHHHHHhhcccchh-----HHHHHHhHHHHHHHHHhcC--CHHHHHHHHHHH
Confidence            98764321       111223445666777777775432221     1112224566777777654  488999999999


Q ss_pred             HhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc--ch
Q 003365          575 TSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV--PL  652 (826)
Q Consensus       575 t~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d--~~  652 (826)
                      .+|+-+.+.+..+-...+++..|+..+ ..    .+..++..|..+|..|+..+..++..++..+.+..|+.+|.+  +.
T Consensus       257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL-~~----~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~  331 (510)
T 3ul1_B          257 SYLTDGPNERIEMVVKKGVVPQLVKLL-GA----TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTN  331 (510)
T ss_dssp             HHHTSSCHHHHHHHHTTTCHHHHHHHH-TC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHH
T ss_pred             HHHhhchhhhHHHHHhcccchhhhhhh-cC----CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHH
Confidence            999976654433222345668888844 43    223577889999999999999999999888888888888876  57


Q ss_pred             hHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchhhhHHHHHHHhHHHHhhcCCchhhHHHHHhcCCChHHHH
Q 003365          653 VRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMTREESSNIFERAGIMEIDLA  732 (826)
Q Consensus       653 ~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~i~~edfa~~l~~~~i~~~~fv  732 (826)
                      .+..||..|.|||.+..+. ...+. =...+|.+++...+.+-+..+....--..++.--+++......+ .|     .+
T Consensus       332 v~~~A~~aL~nl~a~~~~~-~~~v~-~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~-~g-----~i  403 (510)
T 3ul1_B          332 IQKEATWTMSNITAGRQDQ-IQQVV-NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH-CG-----II  403 (510)
T ss_dssp             HHHHHHHHHHHHTTSCHHH-HHHHH-HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH-TT-----CH
T ss_pred             HHHHHHHHHHHHHcCcHHH-HHHHH-hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH-CC-----CH
Confidence            7889999999999854431 11111 13456666665555554443333333333333223433333333 33     34


Q ss_pred             HHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcC------CccHHHHHhhcHHHHHHHH
Q 003365          733 NTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRDK------ATNVHIFKNLGLEMVLESV  786 (826)
Q Consensus       733 ~kLv~iL~~n~~Pt~~~prIRR~~vE~~I~mm~~~------~~y~~~f~e~~m~eaL~~v  786 (826)
                      +.|.+.|+..      =|.|++.+++.+..+++..      ..|...|.++|-.+.|+..
T Consensus       404 ~~L~~LL~~~------d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L  457 (510)
T 3ul1_B          404 EPLMNLLSAK------DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL  457 (510)
T ss_dssp             HHHHHGGGCS------CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHG
T ss_pred             HHHHHHhcCC------CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHH
Confidence            5677777632      2679999999877777532      3477788999877777654
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 826
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 1e-04
d1q1sc_ 434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 9e-04
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 1e-04
 Identities = 26/303 (8%), Positives = 88/303 (29%), Gaps = 28/303 (9%)

Query: 391 KDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKK 450
           ++  + E+  +A   L  L+        +    G ++S+ + +Q   ++    D+  E  
Sbjct: 152 REVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVEN- 210

Query: 451 IILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHD 510
            +    N  +     +     +      +   +  +T     K     +        E +
Sbjct: 211 CMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEE 270

Query: 511 TSSQILTVRRSLQLVKMLAS-------------------TTGITGEHLRREISEVVFTIS 551
           T+ +          ++   +                       +   +   +S+++    
Sbjct: 271 TNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKE 330

Query: 552 NIRDILLHGEKH--PLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPEN 609
                +    +     + + G  +L++++        +G       E+  +L       +
Sbjct: 331 KGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQV--FPEVTRLLTSHTGNTS 388

Query: 610 QNC-VRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLA---VPLVRVNAARILRNLC 665
            +  +  +A   +  L         +     +++ ++        P     A  +L ++ 
Sbjct: 389 NSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448

Query: 666 ASS 668
           +S 
Sbjct: 449 SSK 451
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query826
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.41
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.17
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.05
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.02
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.98
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.95
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.65
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.59
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.19
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.12
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 93.93
d1b3ua_ 588 Constant regulatory domain of protein phosphatase 93.86
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 93.09
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 92.62
d1b3ua_588 Constant regulatory domain of protein phosphatase 92.46
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 92.01
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 91.07
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 88.37
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 87.83
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 86.67
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 83.7
d1qbkb_ 888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 82.54
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 82.13
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 81.35
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=5.3e-12  Score=133.89  Aligned_cols=386  Identities=13%  Similarity=0.150  Sum_probs=250.5

Q ss_pred             HHhhcCCCcchhhhhhHHHHHHhhCcCCc-hHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCce
Q 003365          339 MELLDSNSPDEQLIGARILRQFAMSKRFS-DDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSL  417 (826)
Q Consensus       339 ~dll~S~S~~~qL~GvriL~~~l~~~~~~-~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsL  417 (826)
                      +..++|+.++.|+.++..|..++..++.. -+.+   .. .+.+..|+++|++.  .+.++|..||+++.++|.+..+.-
T Consensus        19 v~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i---~~-~g~i~~Lv~lL~~~--~~~~v~~~a~~~L~~la~~~~~~~   92 (434)
T d1q1sc_          19 VKGINSNNLESQLQATQAARKLLSREKQPPIDNI---IR-AGLIPKFVSFLGKT--DCSPIQFESAWALTNIASGTSEQT   92 (434)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHH---HH-TTCHHHHHHHTTCG--GGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHH---HH-CCCHHHHHHHHccC--CCHHHHHHHHHHHHHHhcCChhhh
Confidence            56789999999999999999998755432 1222   22 26799999999643  457899999999999997533222


Q ss_pred             EEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCchhhhhcc
Q 003365          418 RVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDF  497 (826)
Q Consensus       418 rv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~f  497 (826)
                      +..-=-|+++.+..+|.+++                       .++....+.+|.+|+.|..+|++.....|.+.+++.+
T Consensus        93 ~~i~~~~~i~~l~~~L~~~~-----------------------~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~  149 (434)
T d1q1sc_          93 KAVVDGGAIPAFISLLASPH-----------------------AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL  149 (434)
T ss_dssp             HHHHHTTHHHHHHHHTTCSC-----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH
T ss_pred             hHhhhccchhhhhhccccCC-----------------------HHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHH
Confidence            21112588888888887642                       1456678899999999888888776666888888876


Q ss_pred             cccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhc
Q 003365          498 THAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSL  577 (826)
Q Consensus       498 t~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~L  577 (826)
                      ......       .......+......+..+.........     +-....++..|...|.+  .+++++..|+.+|.+|
T Consensus       150 l~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~l~~l~~ll~~--~~~~~~~~a~~~l~~l  215 (434)
T d1q1sc_         150 LAVPDL-------STLACGYLRNLTWTLSNLCRNKNPAPP-----LDAVEQILPTLVRLLHH--NDPEVLADSCWAISYL  215 (434)
T ss_dssp             TCSSCG-------GGSCHHHHHHHHHHHHHHTCCCTTCCC-----HHHHHHHHHHHHHHTTC--SCHHHHHHHHHHHHHH
T ss_pred             HHhccc-------ccchHHHHHHHHHHHHHHhhcccccch-----hhhhhhHHHHHHHHHhc--cccchhhhHHhhhccc
Confidence            533211       011223345555566666554333221     11112344455555554  4589999999999999


Q ss_pred             cCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc--chhHH
Q 003365          578 ALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV--PLVRV  655 (826)
Q Consensus       578 A~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d--~~~r~  655 (826)
                      +.+.+....+....+++..|+..+ ..    ....++..|..+|..|+..+...+..+++.++++.|+.+|++  +..+.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~Lv~ll-~~----~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~  290 (434)
T d1q1sc_         216 TDGPNERIEMVVKKGVVPQLVKLL-GA----TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQK  290 (434)
T ss_dssp             TSSCHHHHHHHHTTTCHHHHHHHH-TC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHH
T ss_pred             chhhhhhHHHHhhcccchhccccc-cc----chhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhH
Confidence            876554333333345667787744 32    224577788999999998888888888888888999998876  56788


Q ss_pred             HHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchhhhHHHHHHHhHHHHhhcCCchhhHHHHHhcCCChHHHHHHH
Q 003365          656 NAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMTREESSNIFERAGIMEIDLANTL  735 (826)
Q Consensus       656 ~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~i~~edfa~~l~~~~i~~~~fv~kL  735 (826)
                      .|+.+|.|||.+..+ +...+.. ...+|.++....+.+-+..+..+..-..++...+++.....++ .|     +++.|
T Consensus       291 ~a~~~L~~l~~~~~~-~~~~i~~-~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~-~~-----~i~~L  362 (434)
T d1q1sc_         291 EATWTMSNITAGRQD-QIQQVVN-HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH-CG-----IIEPL  362 (434)
T ss_dssp             HHHHHHHHHTTSCHH-HHHHHHH-TTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-TT-----CHHHH
T ss_pred             HHHHHHhhhccccch-hHHHHhh-hhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHH-CC-----cHHHH
Confidence            999999999985432 1111110 2356666665555555555544444444444434444433333 33     45667


Q ss_pred             HHHHhhcCCCCCCCChHHHHHHHHHHHHHhcC------CccHHHHHhhcHHHHHHHH
Q 003365          736 VQILRKYQHPPIKVPRIRRYAIELAIWMMRDK------ATNVHIFKNLGLEMVLESV  786 (826)
Q Consensus       736 v~iL~~n~~Pt~~~prIRR~~vE~~I~mm~~~------~~y~~~f~e~~m~eaL~~v  786 (826)
                      ++.|+..      -|.++..+++.+..+++..      ..|...|.+.|..+.|+..
T Consensus       363 ~~ll~~~------d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L  413 (434)
T d1q1sc_         363 MNLLSAK------DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL  413 (434)
T ss_dssp             HHHTTSS------CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHhcCC------CHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHH
Confidence            7777632      3678999999888888642      2366777777766666554
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure